Modified sequence Experiment N duplicates Sequence Length Missed cleavages Proteins Leading proteins Gene names Protein names Phospho (STY) All Phospho (STY) Probabilities Max Score Min PEP Intensity Reporter intensity corrected 1 Reporter intensity corrected 2 Reporter intensity corrected 3 Reporter intensity corrected 4 Reporter intensity corrected 5 Reporter intensity corrected 6 Reporter intensity corrected 7 Reporter intensity corrected 8 Reporter intensity corrected 9 Reporter intensity corrected 10 Phosphoproteome Fullproteome TMT Channel Normal 1 TMT Channel Normal 2 TMT Channel Normal 3 TMT Channel Normal 4 TMT Channel Normal 5 TMT Channel Normal 6 TMT Channel Normal 7 TMT Channel Normal 8 TMT Channel Normal 9 TMT Channel Normal 10 TMT Channel Ratio 1 TMT Channel Ratio 2 TMT Channel Ratio 3 TMT Channel Ratio 4 TMT Channel Ratio 5 TMT Channel Ratio 6 TMT Channel Ratio 7 TMT Channel Ratio 8 TMT Channel Ratio 9 TMT Channel Ratio 10 Curve signal Log EC50 Curve slope Curve top Curve bottom R2 Curve RMSE Log EC50 error Curve slope error Curve top error Curve bottom error EC50 pEC50 Curve effect size Regulation (ac)AAAAAAAAAAGAAGGRGS(ph)GPGR ddPTM_K562_Paclitaxel_30min_R1 3 AAAAAAAAAAGAAGGRGSGPGR 22 1 Q86U42-2;Q86U42 Q86U42-2 PABPN1 Polyadenylate-binding protein 2 1 AAAAAAAAAAGAAGGRGS(1)GPGR;AAAAAAAAAAGAAGGRGS(1)GPGR;AAAAAAAAAAGAAGGRGS(1)GPGR 148.44 1.01E-54 99091000 345.949 323.99 488.77 428.902 102.58 154.99 413.27 236.397 209.81 277.3 TRUE FALSE 350.7933533 359.3643239 365.3739685 401.3941454 116.5531327 182.4753003 491.6858251 216.3135993 229.963188 220.7861078 1.588837979 1.627658223 1.654877529 1.818022653 0.527900663 0.826479991 2.226978092 0.979742799 1.041565478 1 7.786505588 -6.713285921 24.99976341 1.142055971 1.667909454 0.307889402 0.417256972 169.6411213 88071.41463 0.129398276 0.167052092 1.94E-07 6.713285921 0.525853483 (ac)AAAAAAAGDS(ph)DSWDADAFSVEDPVR ddPTM_K562_Paclitaxel_30min_R1 2 AAAAAAAGDSDSWDADAFSVEDPVR 25 0 O75822-2;O75822-3;O75822 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 AAAAAAAGDS(0.5)DS(0.5)WDADAFS(0.001)VEDPVR;AAAAAAAGDS(0.956)DS(0.044)WDADAFSVEDPVR 215.75 0 3681400 115.77 0 232.61 149.66 0 0 63.364 0 112.98 0 TRUE FALSE 117.3911372 0 173.8847286 140.0614775 0 0 75.38698822 0 123.8322338 0 0 (ac)AAAAAAAGDS(ph)DSWDADAFSVEDPVRK ddPTM_K562_Paclitaxel_30min_R1 6 AAAAAAAGDSDSWDADAFSVEDPVRK 26 1 O75822-2;O75822-3;O75822 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 AAAAAAAGDS(0.993)DS(0.007)WDADAFSVEDPVRK;AAAAAAAGDS(0.841)DS(0.159)WDADAFSVEDPVRK;AAAAAAAGDS(0.76)DS(0.24)WDADAFSVEDPVRK;AAAAAAAGDS(0.804)DS(0.196)WDADAFSVEDPVRK;AAAAAAAGDS(0.943)DS(0.057)WDADAFSVEDPVRK;AAAAAAAGDS(0.757)DS(0.243)WDADAFSVEDPVRK 105.22 1.43E-26 320999700 9531.76 8759.13 13305.8 10022.34 8771.44 8307.7 7626.22 10029.38 10329.69 11703.69 TRUE FALSE 9665.234048 9715.481435 9946.586226 9379.551971 9966.25863 9780.953949 9073.255433 9177.321568 11321.90288 9318.471554 1.037212379 1.042604614 1.067405332 1.006554768 1.069516452 1.049630714 0.973684942 0.984852668 1.214995701 1 13.18587762 -8.722875199 24.99997604 1.107499877 1.030126093 0.233232283 0.056947557 193.19193 125240.6462 0.036376744 0.013748651 1.89E-09 8.722875199 -0.077373784 (ac)AAAAAAAGDSDS(ph)WDADAFSVEDPVRK ddPTM_K562_Paclitaxel_30min_R1 1 AAAAAAAGDSDSWDADAFSVEDPVRK 26 1 O75822-2;O75822-3;O75822 O75822-2 EIF3J Eukaryotic translation initiation factor 3 subunit J 1 AAAAAAAGDS(0.24)DS(0.76)WDADAFSVEDPVRK 42.705 7.85E-05 0 596.93 383.26 752.92 600.69 436.14 471.18 354.38 601.6 476.12 465.47 TRUE FALSE 605.2888617 425.1056229 562.836034 562.164432 495.5496519 554.7371573 421.621755 550.4903249 521.8534534 370.6069585 1.633236635 1.147052459 1.518687173 1.516875005 1.337129918 1.496834165 1.13765202 1.485375038 1.408104844 1 8.533746159 -13.14538652 0.333243788 3.45E-10 1.421039089 0.39476736 0.15273917 94.48600746 2.574316409 66.29545868 0.123927505 7.16E-14 13.14538652 1.421039088 (ac)AAAIT(ph)DMADLEELSRLSPLPPGS(ph)PGSAAR ddPTM_K562_Paclitaxel_30min_R1 2 AAAITDMADLEELSRLSPLPPGSPGSAAR 29 1 Q6ZN18-2;Q6ZN18 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 2 AAAIT(0.734)DMADLEELS(0.182)RLS(0.129)PLPPGS(0.73)PGS(0.225)AAR;AAAIT(0.706)DMADLEELS(0.234)RLS(0.134)PLPPGS(0.721)PGS(0.205)AAR 43.835 8.61E-07 91428000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)AAAMVPGRSES(ph)WER ddPTM_K562_Paclitaxel_30min_R1 1 AAAMVPGRSESWER 14 1 H0Y8X4;O43598;O43598-2 H0Y8X4 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 1 AAAMVPGRS(0.177)ES(0.823)WER 135.86 2.34E-06 42001000 0 0 0 57.381 0 0 0 0 0 0 TRUE FALSE 0 0 0 53.70083949 0 0 0 0 0 0 0 (ac)AAAPQAPGRGS(ph)LRK ddPTM_K562_Paclitaxel_30min_R1 1 AAAPQAPGRGSLRK 14 2 Q5VUC9;Q5VUC3;P78345 Q5VUC9 RPP38 Ribonuclease P protein subunit p38 1 AAAPQAPGRGS(1)LRK 59.294 0.0062658 15962000 2612 2330.5 5001.7 3723.4 3058.1 2755.6 1756.7 2495.7 1940.9 2463.7 TRUE FALSE 2648.576059 2584.951871 3738.958975 3484.597789 3474.664994 3244.266969 2090.024654 2283.674707 2127.332117 1961.596588 1.350214451 1.317779551 1.906079465 1.776408978 1.77134535 1.653891014 1.065471192 1.164191823 1.084490119 1 10.93781266 -7.760570648 24.9942474 1.092220853 1.640853227 0.701418793 0.175848189 14.6009345 420103.922 0.077840825 0.056725782 1.74E-08 7.760570648 0.548632374 (ac)AADVFMCS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 AADVFMCSPR 10 0 Q9HAP2;Q9HAP2-3 Q9HAP2 MLXIP MLX-interacting protein 1 AADVFMCS(1)PR 75.088 0.012686 0 0 0 0 0 0 0 0 119.47 0 0 TRUE FALSE 0 0 0 0 0 0 0 109.3202778 0 0 0 (ac)AAGGAAPETPAIS(ph)PSKR ddPTM_K562_Paclitaxel_30min_R1 2 AAGGAAPETPAISPSKR 17 1 H0YNW5;H0YMM5 H0YNW5 DUT 1 AAGGAAPET(0.235)PAIS(0.66)PS(0.105)KR;AAGGAAPETPAIS(0.82)PS(0.18)KR 97.291 9.11E-06 12231000 1929.21 1738 2637.4 1956.91 1878.62 1567.37 1526.69 1806.44 2047.65 2173.81 TRUE FALSE 1956.224892 1927.760718 1971.555751 1831.402551 2134.519849 1845.321063 1816.371458 1652.971647 2244.335932 1730.786329 1.130252105 1.1138063 1.139109848 1.058133243 1.233265952 1.06617497 1.049448697 0.95504085 1.296714617 1 10.75721191 (ac)AAGGAAPETPAISPS(ph)KR ddPTM_K562_Paclitaxel_30min_R1 1 AAGGAAPETPAISPSKR 17 1 H0YNW5;H0YMM5 H0YNW5 DUT 1 AAGGAAPET(0.043)PAIS(0.202)PS(0.755)KR 107.51 1.98E-08 10777000 1488.9 1438.3 2099.5 1495.4 1444.3 1140.1 1332.6 1677.9 1626.9 1489.6 TRUE FALSE 1509.749194 1595.338458 1569.455259 1399.491737 1641.038112 1342.280727 1585.453893 1535.351922 1783.171014 1186.018702 1.272955638 1.345120827 1.323297226 1.179991289 1.383652812 1.131753424 1.336786587 1.294542758 1.503493166 1 10.21191104 -11.5407597 3.006234399 0.987385966 1.303233121 0.471514406 0.097693645 21095984.47 22478904.03 2142341.872 0.024207406 2.88E-12 11.5407597 0.315847155 (ac)AALGHLAGEAAAAPGPGT(ph)PCASR ddPTM_K562_Paclitaxel_30min_R1 4 AALGHLAGEAAAAPGPGTPCASR 23 0 A0A3B3IRR6;A0A3B3IT54;A0A3B3ITA3;Q9H7E9;Q9H7E9-2 A0A3B3IRR6 C8orf33 UPF0488 protein C8orf33 1 AALGHLAGEAAAAPGPGT(0.994)PCAS(0.006)R;AALGHLAGEAAAAPGPGT(0.998)PCAS(0.002)R;AALGHLAGEAAAAPGPGT(0.993)PCAS(0.007)R;AALGHLAGEAAAAPGPGT(0.997)PCAS(0.003)R 151.2 2.16E-65 173440000 152.9 0 0 0 0 138.7 108.65 0 64.007 118.24 TRUE FALSE 155.0410717 0 0 0 0 163.2964976 129.2657703 0 70.15515834 94.1426231 1.646874355 0 0 0 0 1.734564984 1.373084434 0 0.745200803 1 6.556776146 -7.223280075 24.99153114 0.933228004 0.274479043 0.203726275 0.62699017 948.0943637 620932.3553 0.215865176 0.215860952 5.98E-08 7.223280075 -0.658748961 (ac)AALHTT(ph)PDSPAAQLER ddPTM_K562_Paclitaxel_30min_R1 2 AALHTTPDSPAAQLER 16 0 A6NFI3 A6NFI3 ZNF316 Zinc finger protein 316 1 AALHT(0.059)T(0.904)PDS(0.037)PAAQLER;AALHT(0.051)T(0.842)PDS(0.107)PAAQLER 151.38 4.41E-153 354920000 0 0 0 137.9 0 0 0 0 0 0 TRUE FALSE 0 0 0 129.0557112 0 0 0 0 0 0 0 (ac)AALHTTPDS(ph)PAAQLER ddPTM_K562_Paclitaxel_30min_R1 2 AALHTTPDSPAAQLER 16 0 A6NFI3 A6NFI3 ZNF316 Zinc finger protein 316 1 AALHT(0.396)T(0.076)PDS(0.529)PAAQLER;AALHTTPDS(0.999)PAAQLER 101.04 3.06E-09 507320000 64.398 0 339.44 193.04 0 0 196.4 225.421 124.369 313.302 TRUE FALSE 65.29977068 0 253.7441739 180.6592784 0 0 233.6658747 206.270079 136.3151981 249.4508804 0.261774064 0 1.017210977 0.724227864 0 0 0.936720986 0.826896576 0.546461082 1 7.962611951 -7.780359655 24.99282112 0.813094472 0.352321641 0.349651212 0.32901126 336.2190433 444125.8049 0.149570476 0.101026444 1.66E-08 7.780359655 -0.460772831 (ac)AASAAAASAAAAS(ph)AASGSPGPGEGSAGGEKR ddPTM_K562_Paclitaxel_30min_R1 1 AASAAAASAAAASAASGSPGPGEGSAGGEKR 31 1 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 AASAAAAS(0.047)AAAAS(0.415)AAS(0.415)GS(0.121)PGPGEGS(0.001)AGGEKR 55.852 3.65E-12 11634000 1265.5 969.3 1728.9 1452.4 1196.6 1142.7 1218.1 1536.1 1380.6 1558.8 TRUE FALSE 1283.220904 1075.131452 1292.417812 1359.249565 1359.597179 1345.341801 1449.228116 1405.598717 1513.212799 1241.115704 1.033925282 0.866262064 1.041335476 1.0951836 1.095463681 1.083977744 1.167681717 1.132528347 1.219235881 1 10.2774219 -6.079443994 2.887623713 1.120010563 0.949562694 0.481615812 0.066616046 0.200052524 3.243536512 0.018083732 0.037461752 8.33E-07 6.079443994 -0.170447869 (ac)AASAAAASAAAASAAS(ph)GSPGPGEGSAGGEKR ddPTM_K562_Paclitaxel_30min_R1 1 AASAAAASAAAASAASGSPGPGEGSAGGEKR 31 1 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 AASAAAAS(0.017)AAAAS(0.058)AAS(0.511)GS(0.379)PGPGEGS(0.035)AGGEKR 51.766 1.87E-12 9622800 577.87 642.54 944.38 782.98 641.32 332.32 621.12 803.63 686.57 715.11 TRUE FALSE 585.9619629 712.6946901 705.9595891 732.7631673 728.6786416 391.252286 738.9742775 735.3566154 752.5181162 569.3701895 1.029140573 1.251724631 1.239895594 1.286971431 1.27979767 0.687166791 1.297880169 1.291526372 1.321667573 1 9.15322315 -11.52628102 3.917389167 0.997379188 1.18800809 0.084579186 0.184852601 0.004378077 0.000529428 0.185197763 0.044324399 2.98E-12 11.52628102 0.190628902 (ac)AASAAAASAAAASAASGS(ph)PGPGEGSAGGEKR ddPTM_K562_Paclitaxel_30min_R1 5 AASAAAASAAAASAASGSPGPGEGSAGGEKR 31 1 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 AASAAAASAAAAS(0.006)AAS(0.047)GS(0.921)PGPGEGS(0.026)AGGEKR;AASAAAASAAAAS(0.013)AAS(0.135)GS(0.809)PGPGEGS(0.043)AGGEKR;AASAAAAS(0.004)AAAAS(0.027)AAS(0.045)GS(0.924)PGPGEGS(0.001)AGGEKR;AASAAAAS(0.002)AAAAS(0.004)AAS(0.357)GS(0.636)PGPGEGS(0.002)AGGEKR;AASAAAAS(0.001)AAAAS(0.011)AAS(0.054)GS(0.922)PGPGEGS(0.012)AGGEKR 86.009 1.34E-30 1622921800 8567.96 7040.43 11800.2 9196.23 8092.96 7118.07 7016.68 8943.75 8213.13 10732.4 TRUE FALSE 8687.937874 7809.127957 8821.093567 8606.424969 9195.358167 8380.359772 8348.0584 8183.922612 9002.037834 8545.130989 1.016712077 0.913868724 1.032294716 1.007172971 1.076093296 0.980717532 0.976937441 0.957729334 1.053469847 1 13.06088689 -4.909228833 21.80470398 0.998716993 2.732412379 0.012252622 0.044568068 9908.986513 2180748.526 0.010821282 71559.75253 1.23E-05 4.909228833 1.733695386 (ac)ACS(ph)PDAVVS(ph)PSSAFLR ddPTM_K562_Paclitaxel_30min_R1 2 ACSPDAVVSPSSAFLR 16 0 I3L3F2;H3BV13;H3BQ89;Q93100-4;Q93100-2 I3L3F2 PHKB 2 ACS(1)PDAVVS(0.927)PS(0.041)S(0.033)AFLR;ACS(1)PDAVVS(0.873)PS(0.104)S(0.023)AFLR 84.035 2.10E-06 10725100 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)ACS(ph)PDAVVSPSSAFLR ddPTM_K562_Paclitaxel_30min_R1 3 ACSPDAVVSPSSAFLR 16 0 I3L3F2;H3BV13;H3BQ89;Q93100-4;Q93100-2 I3L3F2 PHKB 1 ACS(1)PDAVVSPSSAFLR;ACS(1)PDAVVSPSSAFLR;ACS(1)PDAVVSPSSAFLR 94.82 2.79E-07 38118000 280.04 157.63 331.814 240.27 247.95 202.452 207.35 216.89 182.35 151.83 TRUE FALSE 283.961424 174.8405765 248.0434519 224.8601576 281.7249878 238.3540196 246.6935801 198.4638407 199.8655323 120.8869627 2.348983031 1.446314579 2.051862719 1.860086089 2.330482805 1.971709888 2.040696322 1.641730724 1.653325784 1 6.917514852 -9.091322136 1.052711186 1.008573612 1.993388207 0.603095476 0.246990227 0.426062442 1.03295173 0.228645703 0.074451063 8.10E-10 9.091322136 0.984814595 (ac)ADAWEEIRR ddPTM_K562_Paclitaxel_30min_R1 1 ADAWEEIRR 9 1 O94874-3;O94874 O94874-3 UFL1 E3 UFM1-protein ligase 1 0 57.177 0.011392 3769700 249.3 265.04 359.87 298.45 309.37 262.57 374.78 282.14 280.91 375.79 FALSE TRUE 252.7909692 293.9779635 269.0163677 279.3087528 351.5114317 309.1331028 445.8925485 258.1704459 307.8926606 299.2037917 0.844878896 0.982534218 0.899107482 0.933506729 1.174822784 1.03318578 1.490263696 0.862858203 1.029039969 1 8.224984648 -6.705687656 7.943253479 1.107697878 0.917639835 0.247181067 0.156269377 0.367098558 45.71227039 0.046456702 0.059812189 1.97E-07 6.705687656 -0.190058044 (ac)ADEAALALQPGGS(ph)PSAAGADR ddPTM_K562_Paclitaxel_30min_R1 1 ADEAALALQPGGSPSAAGADR 21 0 Q96EB6;Q96EB6-2 Q96EB6 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 ADEAALALQPGGS(0.898)PS(0.102)AAGADR 115.38 1.39E-20 24165000 0 0 136.9 0 0 0 0 0 0 0 TRUE FALSE 0 0 102.3379018 0 0 0 0 0 0 0 0 (ac)ADEAALALQPGGS(ph)PSAAGADREAAS(ph)SPAGEPLR ddPTM_K562_Paclitaxel_30min_R1 1 ADEAALALQPGGSPSAAGADREAASSPAGEPLR 33 1 Q96EB6;Q96EB6-2 Q96EB6 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 2 ADEAALALQPGGS(0.498)PS(0.498)AAGADREAAS(0.635)S(0.369)PAGEPLR 41.551 4.94E-05 33875000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)ADEAALALQPGGS(ph)PSAAGADREAASSPAGEPLR ddPTM_K562_Paclitaxel_30min_R1 1 ADEAALALQPGGSPSAAGADREAASSPAGEPLR 33 1 Q96EB6;Q96EB6-2 Q96EB6 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 ADEAALALQPGGS(0.499)PS(0.499)AAGADREAAS(0.001)SPAGEPLR 60.101 1.29E-16 114810000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)ADEAALALQPGGSPS(ph)AAGADREAASSPAGEPLR ddPTM_K562_Paclitaxel_30min_R1 1 ADEAALALQPGGSPSAAGADREAASSPAGEPLR 33 1 Q96EB6;Q96EB6-2 Q96EB6 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 ADEAALALQPGGS(0.171)PS(0.827)AAGADREAAS(0.001)S(0.001)PAGEPLR 75.301 7.48E-14 123550000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)ADEELEALRR ddPTM_K562_Paclitaxel_30min_R1 2 ADEELEALRR 10 1 O14737;Q3HM38;X6R2P6;K7ESJ4;O14737-2 O14737 PDCD5 Programmed cell death protein 5 0 ; 84.498 1.34E-13 53587000 352.68 386.16 499.05 446.54 359.88 324.71 484.44 432.73 436.08 361.29 FALSE TRUE 357.6186081 428.3222547 373.0586553 417.900923 408.9017488 382.2927593 576.3599611 395.9668855 477.9674325 287.6588997 1.243203699 1.488993579 1.296878545 1.452765492 1.421481307 1.328979426 2.003622908 1.376515331 1.661577073 1 8.168215295 (ac)ADFDTYDDRAYSSFGGGR ddPTM_K562_Paclitaxel_30min_R1 2 ADFDTYDDRAYSSFGGGR 18 1 Q15056-2;Q15056 Q15056-2 EIF4H Eukaryotic translation initiation factor 4H 0 ; 66.326 0.010023 57892000 401.75 339.443 543.47 490.663 508.57 456.86 300.64 397.43 466.26 327.05 FALSE TRUE 407.3757395 376.5045347 406.2642769 459.1940713 577.8458442 537.8777064 357.6848706 363.6658408 511.0463563 260.3970305 1.564440803 1.445886437 1.560172465 1.763438202 2.219095368 2.065606145 1.373613477 1.396582135 1.962565992 1 8.024569186 -11.66858929 2.60561679 0.903896765 1.702311689 0.365778368 0.278746472 15877010.55 13220945.42 10128693.2 0.083267959 2.14E-12 11.66858929 0.798414924 (ac)ADGDS(ph)GS(ph)ERGGGGGPCGFQPASR ddPTM_K562_Paclitaxel_30min_R1 2 ADGDSGSERGGGGGPCGFQPASR 23 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 2 ADGDS(1)GS(1)ERGGGGGPCGFQPASR;ADGDS(1)GS(1)ERGGGGGPCGFQPASR 84.62 2.88E-06 203950000 0 0 174.07 64.899 0 121.1 0 66.111 154.52 0 TRUE FALSE 0 0 130.1238756 60.73666862 0 142.5753847 0 60.4944579 169.3623364 0 0 (ac)ADGDS(ph)GSERGGGGGPCGFQPASR ddPTM_K562_Paclitaxel_30min_R1 1 ADGDSGSERGGGGGPCGFQPASR 23 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 ADGDS(0.547)GS(0.453)ERGGGGGPCGFQPASR 64.136 8.31E-08 130570000 0 50.436 134.23 212.94 0 127.87 52.647 0 130.83 177.52 TRUE FALSE 0 55.94277304 100.3419764 199.2829815 0 150.5459491 62.63649341 0 143.3968061 141.3413266 0 0.395799123 0.709926663 1.409941355 0 1.065123363 0.443157673 0 1.014542665 1 7.143039544 -5.445600795 2.902390281 0.670873186 7.22E-09 0.201883141 0.434222305 0.515343974 7.405614647 0.110900878 0.64704578 3.58E-06 5.445600795 -0.670873179 (ac)ADHS(ph)FSDGVPSDSVEAAK ddPTM_K562_Paclitaxel_30min_R1 2 ADHSFSDGVPSDSVEAAK 18 0 E9PNJ7;C9J6D1;Q99733;Q99733-2;E9PS34;E9PKT8;C9JZI7;E9PNW0;E9PJJ2;E9PKI2;E9PP22;C9J1B1 E9PNJ7 NAP1L4 Nucleosome assembly protein 1-like 4 1 ADHS(0.982)FS(0.018)DGVPSDSVEAAK;ADHS(0.622)FS(0.377)DGVPS(0.001)DSVEAAK 140.39 1.04E-32 257974000 3712.24 3412.28 5055.3 3587.7 2631.19 2886.71 3156.35 4392 4109.2 5025.3 TRUE FALSE 3764.222813 3784.84427 3779.026992 3357.60098 2989.602624 3398.627487 3755.250935 4018.872186 4503.90702 4001.141102 0.94078732 0.945941214 0.944487309 0.839160853 0.747187502 0.849414555 0.93854499 1.004431507 1.125655633 1 11.96619579 -8.236676841 2.410579563 1.060661967 0.877505433 0.568343839 0.064845447 0.245761737 2.750230489 0.04717182 0.020873253 5.80E-09 8.236676841 -0.183156534 (ac)ADHSFS(ph)DGVPSDSVEAAK ddPTM_K562_Paclitaxel_30min_R1 1 ADHSFSDGVPSDSVEAAK 18 0 E9PNJ7;C9J6D1;Q99733;Q99733-2;E9PS34;E9PKT8;C9JZI7;E9PNW0;E9PJJ2;E9PKI2;E9PP22;C9J1B1 E9PNJ7 NAP1L4 Nucleosome assembly protein 1-like 4 1 ADHS(0.033)FS(0.668)DGVPS(0.047)DS(0.251)VEAAK 70.197 1.33E-53 0 577.47 502.6 673.86 673.89 375.38 433.28 488.65 657.32 855.32 823.75 TRUE FALSE 585.5563616 557.4755677 503.7357088 630.6697116 426.5131112 510.1161244 581.3687866 601.4765631 937.4773077 655.8692978 0.892794286 0.849979667 0.768042826 0.961578341 0.650301993 0.777771007 0.886409516 0.917067722 1.42936605 1 9.357264532 -8.599443752 6.543762575 1.211414755 0.827230905 0.599409671 0.124988052 0.13394533 9.081462115 0.082173843 0.030305372 2.52E-09 8.599443752 -0.38418385 (ac)ADPAAGPPPS(ph)EGEESTVR ddPTM_K562_Paclitaxel_30min_R1 2 ADPAAGPPPSEGEESTVR 18 0 P05771-2;P05771 P05771-2 PRKCB Protein kinase C beta type 1 ADPAAGPPPS(1)EGEESTVR;ADPAAGPPPS(1)EGEESTVR 172.56 3.75E-25 21828000 315.1 413.18 534.01 243.44 537.51 412.534 471.97 520.38 842.96 713.742 TRUE FALSE 319.5123722 458.2923897 399.1925709 227.826848 610.7279621 485.6911126 561.5238437 476.1704709 923.9300744 568.2809886 0.562243641 0.806453847 0.702456318 0.400905278 1.074693636 0.854667185 0.9881095 0.837913779 1.625833158 1 9.150460642 -7.639494511 0.774451135 1.20076981 0.649193269 0.444943554 0.234394247 0.635249032 0.771080641 0.181991749 0.123443311 2.29E-08 7.639494511 -0.551576541 (ac)ADSS(ph)PALSLR ddPTM_K562_Paclitaxel_30min_R1 1 ADSSPALSLR 10 0 Q8IV50 Q8IV50 LYSMD2 LysM and putative peptidoglycan-binding domain-containing protein 2 1 ADS(0.024)S(0.975)PALS(0.001)LR 84.507 0.02721 0 1110.3 936.35 1456.1 1151 768.75 985.4 1063.4 1325 1069.1 1193.1 TRUE FALSE 1125.847626 1038.58386 1088.489546 1077.180012 873.466765 1160.146854 1265.174599 1212.43298 1171.791832 949.9455651 1.185170674 1.093308814 1.145844126 1.133938671 0.919491387 1.221277194 1.33183905 1.276318375 1.233535768 1 9.891701035 -7.489671266 24.99278883 1.239608204 1.097356044 0.218855379 0.105050531 782.1398024 588659.4281 0.035856396 0.031600421 3.24E-08 7.489671266 -0.14225216 (ac)AEAGPQAPPPPGT(ph)PSRHEK ddPTM_K562_Paclitaxel_30min_R1 1 AEAGPQAPPPPGTPSRHEK 19 1 H3BMP3;H3BTM3;H3BVE4;Q16254 H3BMP3 E2F4 Transcription factor E2F4 1 AEAGPQAPPPPGT(0.746)PS(0.254)RHEK 50.493 0.012815 0 320.12 303.89 417.53 199.42 146.94 266.4 237.89 299.84 350.11 476.85 TRUE FALSE 324.6026677 337.0697379 312.1193876 186.6300938 166.9557157 313.6422996 283.0283856 274.3667205 383.7396298 379.6677083 0.854965172 0.887801966 0.822085684 0.491561673 0.43974168 0.826096855 0.745463413 0.722649608 1.010724962 1 8.568593489 -8.760312158 23.0190219 1.005362793 0.719461588 0.388374025 0.141254332 11.97139344 244607.0437 0.121980361 0.040093022 1.74E-09 8.760312158 -0.285901206 (ac)AEAPAS(ph)PAPLSPLEVELDPEFEPQSRPR ddPTM_K562_Paclitaxel_30min_R1 2 AEAPASPAPLSPLEVELDPEFEPQSRPR 28 1 O43524 O43524 FOXO3 Forkhead box protein O3 1 AEAPAS(0.948)PAPLS(0.052)PLEVELDPEFEPQSRPR;AEAPAS(0.926)PAPLS(0.074)PLEVELDPEFEPQSRPR 73.153 3.10E-05 24759000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)AEDVSSAAPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 AEDVSSAAPSPR 12 0 E5RFJ5;P54274-2;P54274 E5RFJ5 TERF1 Telomeric repeat-binding factor 1 1 AEDVS(0.008)S(0.001)AAPS(0.991)PR 82.578 0.0012569 15963000 128.14 0 232.33 146.31 39.405 119.04 156.92 191.15 156.12 279.17 TRUE FALSE 129.9343553 0 173.6754181 136.9263315 44.77262813 140.1500726 186.6947508 174.9106144 171.1160236 222.2750008 0.584565763 0 0.781353807 0.616022184 0.201428987 0.630525575 0.839926893 0.786910871 0.769839267 1 7.796201888 -7.558608982 4.268343297 0.827260989 0.438444954 0.451020119 0.213471513 0.209660711 8.600290912 0.083584102 0.065402337 2.76E-08 7.558608982 -0.388816035 (ac)AEPPS(ph)PVHCVAAAAPTATVSEKEPFGK ddPTM_K562_Paclitaxel_30min_R1 2 AEPPSPVHCVAAAAPTATVSEKEPFGK 27 1 Q6PCB5 Q6PCB5 RSBN1L Round spermatid basic protein 1-like protein 1 AEPPS(1)PVHCVAAAAPTATVSEKEPFGK;AEPPS(1)PVHCVAAAAPTATVSEKEPFGK 87.05 3.74E-11 217507000 6510.6 4800 11056.8 6468.1 5082.2 4483.5 4326.1 6473.9 6090.3 8947 TRUE FALSE 6601.768487 5324.080233 8265.374091 6053.265016 5774.481682 5278.585774 5146.954891 5923.901786 6675.300527 7123.596489 0.926746552 0.747386554 1.160281061 0.849748442 0.810613247 0.741000109 0.722521959 0.831588622 0.937068872 1 12.79839008 -4.921566971 19.5350606 0.858544483 3.249535661 0.015801139 0.128451154 1525.020973 399898.3837 0.031835326 8417.185709 1.20E-05 4.921566971 2.390991178 (ac)AES(ph)SESFTMASS(ph)PAQR ddPTM_K562_Paclitaxel_30min_R1 1 AESSESFTMASSPAQR 16 0 P49736;F8WDM3 P49736 MCM2 DNA replication licensing factor MCM2 2 AES(0.688)S(0.312)ESFTMAS(0.124)S(0.876)PAQR 140.75 1.11E-62 14105000 186 135.85 260.84 215.08 0 0 0 156.25 254.79 113.73 TRUE FALSE 188.6045739 150.6825624 194.987716 201.2857315 0 0 0 142.9755872 279.2637179 90.55176357 2.082837113 1.664048898 2.153328751 2.222880301 0 0 0 1.578937633 3.08402296 1 6.500670834 -10.52210192 9.687374717 0.999999502 1.352275368 0.010966412 1.027951078 0 0 1.096668613 0.265981208 3.01E-11 10.52210192 0.352275866 (ac)AESS(ph)ESFTMASS(ph)PAQR ddPTM_K562_Paclitaxel_30min_R1 1 AESSESFTMASSPAQR 16 0 P49736;F8WDM3 P49736 MCM2 DNA replication licensing factor MCM2 2 AES(0.404)S(0.596)ESFTMAS(0.289)S(0.711)PAQR 150.01 9.29E-10 12024000 148.15 171.66 283.42 151.13 227.24 151.7 130.47 222.9 179.82 353.2 TRUE FALSE 150.2245571 190.4024193 211.8671157 141.4371982 258.1939352 178.601865 155.2260014 203.9632537 197.0925145 281.2176461 0.53419321 0.677064267 0.753391967 0.502945673 0.918128499 0.635101913 0.551978169 0.725286114 0.700854008 1 8.135543315 -9.514145805 1.419771096 0.999917522 0.663455373 0.435950518 0.11489599 2.557715896 6.075843907 0.107338977 0.03136959 3.06E-10 9.514145805 -0.336462149 (ac)AESS(ph)ESFTMASS(ph)PAQRR ddPTM_K562_Paclitaxel_30min_R1 1 AESSESFTMASSPAQRR 17 1 P49736;F8WDM3 P49736 MCM2 DNA replication licensing factor MCM2 2 AES(0.368)S(0.435)ES(0.082)FT(0.116)MAS(0.39)S(0.608)PAQRR 42.149 0.0060448 28101000 0 0 216.87 118.36 100.34 0 129.26 0 176.23 0 TRUE FALSE 0 0 162.1184863 110.7689194 114.0080068 0 153.7864102 0 193.1576789 0 0 (ac)AESSES(ph)FTMASS(ph)PAQRR ddPTM_K562_Paclitaxel_30min_R1 1 AESSESFTMASSPAQRR 17 1 P49736;F8WDM3 P49736 MCM2 DNA replication licensing factor MCM2 2 AES(0.289)S(0.289)ES(0.401)FT(0.056)MAS(0.335)S(0.63)PAQRR 46.162 0.0080647 8648700 229.77 155 324.65 193.56 147.43 194.33 192.24 441.2 249.83 234.72 TRUE FALSE 232.9874889 171.9234242 242.6880923 181.1459279 167.512462 228.791697 228.7165364 403.7173061 273.8272878 186.8839352 1.246696184 0.919947582 1.298603286 0.969296413 0.896344899 1.22424486 1.223842682 2.160256877 1.465226465 1 7.545998748 -8.020553979 23.49748308 1.626055112 1.091569851 0.305482397 0.294996583 341.2502128 390117.8639 0.129073649 0.075809853 9.54E-09 8.020553979 -0.534485261 (ac)AESSESFTMAS(ph)SPAQR ddPTM_K562_Paclitaxel_30min_R1 2 AESSESFTMASSPAQR 16 0 P49736;F8WDM3 P49736 MCM2 DNA replication licensing factor MCM2 1 AESSESFTMAS(0.993)S(0.007)PAQR;AES(0.014)SESFT(0.002)MAS(0.865)S(0.119)PAQR 226.88 5.35E-40 124692000 0 70.438 68.288 139.17 0 134.42 163.04 187.12 148.5 0 TRUE FALSE 0 78.12865905 51.04784982 130.2442591 0 158.2574996 193.9759889 171.222988 162.7640885 0 0 (ac)AESSESFTMAS(ph)SPAQRR ddPTM_K562_Paclitaxel_30min_R1 2 AESSESFTMASSPAQRR 17 1 P49736;F8WDM3 P49736 MCM2 DNA replication licensing factor MCM2 1 AESSES(0.001)FT(0.061)MAS(0.469)S(0.469)PAQRR;AESSES(0.001)FT(0.173)MAS(0.413)S(0.413)PAQRR 74.772 0.00057329 64463000 379.363 292.016 483.31 599.41 323.97 411.28 391.55 338.144 507.76 579.47 TRUE FALSE 384.6752524 323.8992944 361.292413 560.9665255 368.1001989 484.2147333 465.8445685 309.4165566 556.5326167 461.3736959 0.833760693 0.702032425 0.783079782 1.215861525 0.797835252 1.049506588 1.00969035 0.670641953 1.206251292 1 8.849791944 -6.038340974 24.84339016 0.975999125 0.761561282 0.283776594 0.158557979 612.0492121 396582.3286 0.040733638 0.070574158 9.16E-07 6.038340974 -0.214437843 (ac)AESSESFTMASS(ph)PAQR ddPTM_K562_Paclitaxel_30min_R1 4 AESSESFTMASSPAQR 16 0 P49736;F8WDM3 P49736 MCM2 DNA replication licensing factor MCM2 1 AESSESFTMAS(0.046)S(0.954)PAQR;AESSESFTMAS(0.3)S(0.7)PAQR;AESS(0.002)ES(0.007)FT(0.123)MAS(0.172)S(0.696)PAQR;AESSESFTMAS(0.227)S(0.773)PAQR 171.11 1.06E-39 170342000 270.286 201.63 481.6 409.658 113.398 145.18 133.07 298.197 667.53 291.85 TRUE FALSE 274.0708379 223.6446453 360.0141236 383.3843694 128.8447274 170.9256346 158.3193378 272.8633036 731.6492391 232.3708098 1.179454675 0.962447243 1.549308728 1.649881798 0.554478971 0.735572746 0.68132197 1.174258091 3.148628004 1 7.86028504 -8.55724839 24.86932441 2.103359613 1.044452174 0.326058619 0.585124592 187.844514 135917.9369 0.381256832 0.14410292 2.77E-09 8.55724839 -1.058907439 (ac)AESSESFTMASS(ph)PAQRR ddPTM_K562_Paclitaxel_30min_R1 2 AESSESFTMASSPAQRR 17 1 P49736;F8WDM3 P49736 MCM2 DNA replication licensing factor MCM2 1 AES(0.001)S(0.001)ES(0.006)FT(0.015)MAS(0.237)S(0.74)PAQRR;AESSESFT(0.011)MAS(0.037)S(0.952)PAQRR 108.14 2.14E-23 552080000 140.77 141.35 370.59 107.98 55.554 215.524 63.88 335.07 284.296 249.266 TRUE FALSE 142.7412143 156.783071 277.0299711 101.0546461 63.12139534 253.7441553 76.00089652 306.6037121 311.6039011 198.4654524 0.719224493 0.789976639 1.395859923 0.509180036 0.31804727 1.278530607 0.382942702 1.544871958 1.570066212 1 7.632744084 -8.277907871 24.92778452 1.418101882 0.787418433 0.367505458 0.359353428 848.7626485 1284735.121 0.192941428 0.093106164 5.27E-09 8.277907871 -0.630683449 (ac)AETLSGLGDSGAAGAAALS(ph)SASSETGTRR ddPTM_K562_Paclitaxel_30min_R1 1 AETLSGLGDSGAAGAAALSSASSETGTRR 29 1 Q15424-2;Q15424;Q15424-3;Q15424-4;K7ES42 Q15424-2 SAFB Scaffold attachment factor B1 1 AETLSGLGDSGAAGAAALS(0.512)S(0.05)AS(0.038)S(0.102)ET(0.05)GT(0.248)RR 85.191 1.73E-35 57799000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)AETLSGLGDSGAAGAAALSSASSETGT(ph)RR ddPTM_K562_Paclitaxel_30min_R1 3 AETLSGLGDSGAAGAAALSSASSETGTRR 29 1 Q15424-2;Q15424;Q15424-3;Q15424-4;K7ES42 Q15424-2 SAFB Scaffold attachment factor B1 1 AETLSGLGDSGAAGAAALS(0.196)S(0.054)AS(0.054)S(0.26)ET(0.14)GT(0.296)RR;AETLSGLGDSGAAGAAALS(0.1)S(0.033)AS(0.012)S(0.22)ET(0.127)GT(0.508)RR;AETLSGLGDSGAAGAAALS(0.211)S(0.027)AS(0.027)S(0.212)ET(0.125)GT(0.397)RR 73.269 1.82E-13 145147000 0 0 145.511 146.028 0 0 142.49 153.47 0 0 TRUE FALSE 0 0 108.7749484 136.6624177 0 0 169.5267337 140.4317656 0 0 0 (ac)AFS(ph)PWQILS(ph)PVQWAK ddPTM_K562_Paclitaxel_30min_R1 2 AFSPWQILSPVQWAK 15 0 O75410-9;O75410;O75410-2;E5RJG6;O75410-10;O75410-6 O75410-9 TACC1 Transforming acidic coiled-coil-containing protein 1 2 AFS(1)PWQILS(1)PVQWAK;AFS(1)PWQILS(1)PVQWAK 94.544 1.90E-09 506600 205.735 238.075 117.56 354.39 195.45 142.38 52.654 124.08 368.24 381.14 TRUE FALSE 208.6159247 264.0688336 87.88052404 331.6610116 222.073599 167.6290939 62.64482163 113.5386295 403.6110973 303.4634588 0.687449901 0.870183299 0.289591783 1.092919104 0.731796836 0.552386421 0.206432833 0.374142673 1.330015478 1 8.245378996 -8.765562548 24.9999728 1.165007885 0.605267286 0.421196574 0.264601398 111.2181712 674303.8018 0.23575559 0.069474807 1.72E-09 8.765562548 -0.559740598 (ac)AGAGS(ph)AAVSGAGTPVAGPTGR ddPTM_K562_Paclitaxel_30min_R1 1 AGAGSAAVSGAGTPVAGPTGR 21 0 O95295 O95295 SNAPIN SNARE-associated protein Snapin 1 AGAGS(0.863)AAVS(0.136)GAGT(0.001)PVAGPTGR 78.401 1.90E-16 8050400 117.84 0 62.626 71.063 56.166 0 139.66 137.18 130.05 121.85 TRUE FALSE 119.4901236 0 46.81529175 66.50533725 63.8167601 0 166.1597559 125.5257027 142.5418836 97.01690312 1.231642319 0 0.482547785 0.685502579 0.657790117 0 1.712688723 1.293853944 1.469247925 1 6.600164223 -7.76856271 24.99978046 1.393435527 0.499922207 0.564105102 0.369770561 116.4942985 408839.4927 0.145468616 0.100397829 1.70E-08 7.76856271 -0.89351332 (ac)AGLS(ph)DLELRR ddPTM_K562_Paclitaxel_30min_R1 2 AGLSDLELRR 10 1 Q8NC56;D6RBV0 Q8NC56 LEMD2 LEM domain-containing protein 2 1 AGLS(1)DLELRR;AGLS(1)DLELRR 62.466 0.0041265 55109000 276.107 222.247 453 415.66 358.14 278.229 271.84 443.14 454.73 317.6 TRUE FALSE 279.9733499 246.5126791 338.6345474 389.001428 406.9247314 327.5690066 323.4202209 405.492491 498.4088483 252.8729457 1.107170042 0.974847975 1.33914898 1.538327586 1.609206277 1.29538969 1.278983088 1.603542403 1.970985259 1 7.982268884 -5.91541489 3.883235314 1.484530562 1.042969586 0.324818785 0.24350104 0.245088122 7.097709 0.065384448 0.147838065 1.22E-06 5.91541489 -0.441560977 (ac)AHS(ph)PVAVQVPGMQNNIADPEELFTK ddPTM_K562_Paclitaxel_30min_R1 2 AHSPVAVQVPGMQNNIADPEELFTK 25 0 Q8NBY1;B4E0Y9;Q9P289-3;Q9P289 Q8NBY1 STK26 Serine/threonine-protein kinase 26 1 AHS(1)PVAVQVPGMQNNIADPEELFTK;AHS(1)PVAVQVPGMQNNIADPEELFTK 75.623 1.78E-10 45260000 3623.9 4333.3 5937.5 4468.6 3181.4 3881 3978.7 5573 2681.4 6103.5 TRUE FALSE 3674.645781 4806.424348 4438.504691 4182.003997 3614.760542 4569.240858 4733.637555 5099.538864 2938.960451 4859.60335 0.756161669 0.989056926 0.913347113 0.860564885 0.743838598 0.940249755 0.974078997 1.049373477 0.604773731 1 12.24662285 (ac)AHS(ph)PVAVQVPGMQNNIADPEELFTKLER ddPTM_K562_Paclitaxel_30min_R1 4 AHSPVAVQVPGMQNNIADPEELFTKLER 28 1 Q8NBY1;B4E0Y9;Q9P289-3;Q9P289 Q8NBY1 STK26 Serine/threonine-protein kinase 26 1 AHS(1)PVAVQVPGMQNNIADPEELFTKLER;AHS(1)PVAVQVPGMQNNIADPEELFTKLER;AHS(1)PVAVQVPGMQNNIADPEELFTKLER;AHS(1)PVAVQVPGMQNNIADPEELFTKLER 61.417 1.04E-13 262119000 2450.3 2880.61 3745.91 2544.32 2292.51 2156.94 2598.27 3832.79 3171.65 3733.89 TRUE FALSE 2484.61176 3195.124741 2800.208692 2381.138703 2604.788675 2539.443024 3091.278169 3507.170566 3476.301154 2972.921168 0.83574761 1.074742504 0.941904791 0.800942429 0.876171458 0.854191174 1.039811685 1.179705201 1.169321673 1 11.53766549 -7.950910914 4.295384639 1.128741923 0.90278994 0.585514103 0.083826596 0.149282016 5.863928081 0.039104086 0.025026987 1.12E-08 7.950910914 -0.225951982 (ac)AHS(ph)PVQSGLPGMQNLK ddPTM_K562_Paclitaxel_30min_R1 4 AHSPVQSGLPGMQNLK 16 0 B4DR80;Q9Y6E0-2 B4DR80 STK24 1 AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(1)PVQSGLPGMQNLK;AHS(0.995)PVQS(0.005)GLPGMQNLK 176.89 2.88E-132 225566000 9155.3 9193.1 14439.3 10581.3 8692.4 7937.8 9042.7 11966.2 6329.95 13538.2 TRUE FALSE 9283.502447 10196.83375 10793.92013 9902.662778 9876.452044 9345.457378 10758.50512 10949.59662 6937.96998 10779.10741 0.861249647 0.945981273 1.001374207 0.918690426 0.916258802 0.866997333 0.998088683 1.015816635 0.643649768 1 13.3959501 -8.715616116 24.99993738 0.821816988 0.94069202 0.202254077 0.094320972 161.0099602 87842.69844 0.059523706 0.022497658 1.92E-09 8.715616116 0.118875032 (ac)AHS(ph)PVQSGLPGMQNLKADPEELFTK ddPTM_K562_Paclitaxel_30min_R1 1 AHSPVQSGLPGMQNLKADPEELFTK 25 1 B4DR80;Q9Y6E0-2 B4DR80 STK24 1 AHS(0.971)PVQS(0.029)GLPGMQNLKADPEELFTK 50.426 0.00010819 12089000 1500.6 1227.8 2816.9 1757.1 1275.3 1137.3 1019.3 2149.8 1319.4 2626.4 TRUE FALSE 1521.61303 1361.855356 2105.738756 1644.40747 1449.017451 1338.984187 1212.706854 1967.161071 1446.134265 2091.138238 0.727648226 0.651250755 1.006982091 0.786369567 0.692932406 0.640313568 0.579926679 0.94071307 0.691553642 1 11.03007272 -10.17379595 0.934576474 1.004834053 0.745746284 0.260743399 0.127347682 17.67166033 12.33635367 0.46676296 0.041588759 6.70E-11 10.17379595 -0.259087768 (ac)ALSVPGYS(ph)PGFR ddPTM_K562_Paclitaxel_30min_R1 1 ALSVPGYSPGFR 12 0 F8WC22;F8WD19;C9J4K5;C9JSP0;F8W8A5;Q9NYP3-2;Q9NYP3-3;Q9NYP3 F8WC22 DONSON Protein downstream neighbor of Son 1 ALS(0.008)VPGY(0.004)S(0.987)PGFR 67.118 0.022412 4795600 120.52 170.76 234.93 178.79 141.02 42.975 0 154.51 56.662 0 TRUE FALSE 122.2076518 189.4041543 175.6190159 167.3232096 160.2293115 50.59601285 0 141.3834111 62.10463827 0 0 (ac)AMSSGGS(ph)GGGVPEQEDSVLFR ddPTM_K562_Paclitaxel_30min_R1 2 AMSSGGSGGGVPEQEDSVLFR 21 0 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 1 AMS(0.041)S(0.041)GGS(0.919)GGGVPEQEDSVLFR;AMS(0.239)S(0.239)GGS(0.522)GGGVPEQEDSVLFR 122.57 1.23E-22 9166300 67.503 0 0 68.04 0 0 140.7 0 0 53.582 TRUE FALSE 68.44825026 0 0 63.67621894 0 0 167.3970905 0 0 42.66195899 1.604432893 0 0 1.492576066 0 0 3.923802246 0 0 1 5.414878309 (ac)ANNS(ph)PALTGNSQPQHQAAAAAAQQQQQCGGGGATKPAVSGK ddPTM_K562_Paclitaxel_30min_R1 2 ANNSPALTGNSQPQHQAAAAAAQQQQQCGGGGATKPAVSGK 41 1 Q5VTL8;Q5VTL8-2 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 1 ANNS(0.333)PALT(0.333)GNS(0.333)QPQHQAAAAAAQQQQQCGGGGATKPAVSGK;ANNS(0.333)PALT(0.333)GNS(0.333)QPQHQAAAAAAQQQQQCGGGGATKPAVSGK 74.063 4.00E-28 28622000 4659.4 4075.1 8769.4 5661.1 3802 4061.2 3442.1 6151 5026.4 6808.7 TRUE FALSE 4724.645975 4520.033199 6555.456511 5298.022384 4319.896768 4781.396798 4095.220506 5628.434157 5509.208179 5421.083203 0.871531721 0.83378783 1.209252149 0.977299589 0.796869667 0.882000261 0.755424765 1.038248989 1.016255972 1 12.40436543 (ac)AQES(ph)PKNSAAEIPVTSNGEVDDSREHSFNR ddPTM_K562_Paclitaxel_30min_R1 3 AQESPKNSAAEIPVTSNGEVDDSREHSFNR 30 2 P53367-3;P53367-2;P53367 P53367-3 ARFIP1 Arfaptin-1 1 AQES(0.711)PKNS(0.241)AAEIPVT(0.024)S(0.024)NGEVDDSREHSFNR;AQES(0.947)PKNS(0.053)AAEIPVTSNGEVDDSREHSFNR;AQES(0.889)PKNS(0.103)AAEIPVT(0.006)S(0.001)NGEVDDSREHSFNR 59.359 6.33E-07 66778000 1406.09 1147.16 1936.01 1597.57 1040.37 1187.77 773.16 1402.15 1364.48 1966.42 TRUE FALSE 1425.779598 1272.410808 1447.240331 1495.109011 1182.086008 1398.404332 919.8630738 1283.028606 1495.544401 1565.662525 0.910655761 0.812698004 0.924362887 0.954936959 0.755006899 0.893170981 0.587523211 0.819479668 0.955215046 1 10.61255756 -6.760260274 24.9999787 0.816568067 0.896072973 0.060838479 0.112439948 78.42158551 1662703.052 0.033973426 0.041415545 1.74E-07 6.760260274 0.079504906 (ac)AQS(ph)SPQLDIQVLHDLR ddPTM_K562_Paclitaxel_30min_R1 2 AQSSPQLDIQVLHDLR 16 0 F6SS63;Q8N5C8-2;Q8N5C8;A0A0A0MQY2 F6SS63 TAB3 TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 1 AQS(0.5)S(0.5)PQLDIQVLHDLR;AQS(0.5)S(0.5)PQLDIQVLHDLR 69.602 0.018323 9555300 381.32 386.46 506.93 494.39 377.63 257.32 460.38 300.756 378.873 349.53 TRUE FALSE 386.6596565 428.6550097 378.9492519 462.6820382 429.0695993 302.952089 547.7347017 275.2049005 415.2654445 278.2955941 1.389384757 1.540286727 1.361678948 1.662556102 1.541776472 1.088598222 1.968175973 0.988894206 1.492173981 1 8.120474258 -9.315866114 0.715054802 1.000097636 1.486706982 0.219570329 0.260194275 1.690145796 1.701061512 0.25259891 0.091474984 4.83E-10 9.315866114 0.486609346 (ac)AQSS(ph)PQLDIQVLHDLR ddPTM_K562_Paclitaxel_30min_R1 2 AQSSPQLDIQVLHDLR 16 0 F6SS63;Q8N5C8-2;Q8N5C8;A0A0A0MQY2 F6SS63 TAB3 TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 1 AQS(0.113)S(0.887)PQLDIQVLHDLR;AQS(0.176)S(0.824)PQLDIQVLHDLR 132.65 8.83E-10 13078300 0 52.758 0 0 0 0 0 0 68.213 0 TRUE FALSE 0 58.51829686 0 0 0 0 0 0 74.76516343 0 0 (ac)AS(ph)AVSPANLPAVLLQPR ddPTM_K562_Paclitaxel_30min_R1 1 ASAVSPANLPAVLLQPR 17 0 P51610-2;P51610;A6NEM2;P51610-4;P51610-3 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 AS(0.947)AVS(0.053)PANLPAVLLQPR 60.691 0.0079306 41830000 118.02 0 250.59 224.1 56.878 213.97 161.19 185.32 206.47 140.41 TRUE FALSE 119.6726441 0 187.3254552 209.727229 64.62574655 251.9145752 191.774961 169.5759093 226.302366 111.7943649 1.070471166 0 1.675625201 1.876008949 0.578076959 2.253374536 1.715426007 1.516855607 2.024273461 1 6.80470366 -5.777568291 24.9500511 1.602095336 0.535235613 0.393365978 0.518365852 188.3522592 291365.4677 0.129740829 0.271412893 1.67E-06 5.777568291 -1.066859723 (ac)AS(ph)CASIDIEDATQHLR ddPTM_K562_Paclitaxel_30min_R1 1 ASCASIDIEDATQHLR 16 0 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 AS(0.933)CAS(0.067)IDIEDATQHLR 148.28 3.59E-94 18097000 0 0 0 0 0 0 0 0 0 56.609 TRUE FALSE 0 0 0 0 0 0 0 0 0 45.07205473 0 0 0 0 0 0 0 0 0 1 5.494161315 (ac)AS(ph)EDNRVPSPPPTGDDGGGGGR ddPTM_K562_Paclitaxel_30min_R1 1 ASEDNRVPSPPPTGDDGGGGGR 22 1 A0A494C0R9;E9PEM5;A0A494C1L5;P50851-2;P50851 A0A494C0R9 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 AS(0.924)EDNRVPS(0.076)PPPTGDDGGGGGR 88.282 0.00026732 27055000 0 0 0 143.43 120.07 61.556 123 206.23 164.89 155.81 TRUE FALSE 0 0 0 134.2310418 136.4255668 72.47209231 146.3386079 188.7094743 180.7284212 124.0558365 0 0 0 1.082021174 1.09971099 0.5841893 1.179618888 1.521165627 1.456831266 1 6.954845801 -6.269461142 5.969110159 1.134592783 5.83E-14 0.823088492 0.240556067 0.068636174 10.7393807 0.075978838 0.121126352 5.38E-07 6.269461142 -1.134592783 (ac)AS(ph)GVAVSDGVIK ddPTM_K562_Paclitaxel_30min_R1 5 ASGVAVSDGVIK 12 0 E9PS23;E9PP50;P23528 E9PS23 CFL1 Cofilin-1 1 AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK;AS(1)GVAVSDGVIK 94.692 9.16E-05 769896200 28985.9 21569.9 25509 20767.1 19964.9 21700.9 25410.3 31803 36144.1 42972.9 TRUE FALSE 29391.79203 23924.97463 19068.93746 19435.19116 22684.45739 25549.24992 30231.77177 29101.13664 39615.9023 34214.99939 0.85903237 0.699253984 0.557326839 0.568031317 0.662997451 0.746726593 0.883582414 0.850537401 1.157851907 1 15.0623413 -8.078935862 1.183549736 1.052233835 0.660037483 0.699743185 0.098863129 0.285658519 0.73511561 0.082205413 0.035886157 8.34E-09 8.078935862 -0.392196352 (ac)AS(ph)GVQVADEVCR ddPTM_K562_Paclitaxel_30min_R1 2 ASGVQVADEVCR 12 0 F6RFD5;P60981 F6RFD5 DSTN Destrin 1 AS(1)GVQVADEVCR;AS(1)GVQVADEVCR 107.21 9.05E-05 94341000 399.46 272.07 495.7 379.96 339.075 323.4 199.83 372.94 215.38 315.395 TRUE FALSE 405.0536724 301.7755227 370.5544043 355.5910662 385.2627556 380.7504492 237.7466993 341.2564192 236.0682113 251.1173259 1.613005678 1.201731189 1.475622612 1.416035572 1.534194243 1.516225326 0.94675546 1.358952107 0.940071381 1 7.972217761 -7.753726634 24.99132616 1.091357402 1.449910374 0.625415466 0.150084472 120.7440244 391243.6795 0.055605802 0.042243181 1.76E-08 7.753726634 0.358552972 (ac)AS(ph)PGIEVELLGK ddPTM_K562_Paclitaxel_30min_R1 2 ASPGIEVELLGK 12 0 Q8TCY9 Q8TCY9 URGCP Up-regulator of cell proliferation 1 AS(1)PGIEVELLGK;AS(1)PGIEVELLGK 95.523 0.00028843 6142800 7751.3 7047.6 10920.2 8555.1 7210.5 6522.6 6270 8574.9 7164.3 10519.9 TRUE FALSE 7859.842115 7817.080801 8163.260451 8006.414177 8192.692175 7679.291528 7459.699768 7846.408722 7852.463026 8375.938606 0.938383444 0.933278188 0.974608439 0.955882625 0.978122281 0.916827581 0.890610607 0.936779636 0.937502457 1 13.03203515 -7.27479511 24.92173982 0.929534444 0.955810789 0.08069633 0.029018092 1439.071551 2685292.316 0.010078505 0.008940182 5.31E-08 7.27479511 0.026276345 (ac)AS(ph)PQGGQIAIAMR ddPTM_K562_Paclitaxel_30min_R1 1 ASPQGGQIAIAMR 13 0 Q9BSM1 Q9BSM1 PCGF1 Polycomb group RING finger protein 1 1 AS(1)PQGGQIAIAMR 75.378 0.013761 0 281.86 135.46 325.38 155.63 142.63 165.62 0 219.19 185.61 294.89 TRUE FALSE 285.8069096 150.2499809 243.2337948 145.6485884 162.0586207 194.9903816 0 200.5684414 203.4386698 234.7912561 1.217280892 0.639930053 1.035957636 0.620332251 0.690224259 0.830484 0 0.854241528 0.866466125 1 7.875234872 -2.000006021 0.848052745 0.679025393 172.1420506 0.193542313 0.281419634 1111.392022 3.096159679 0.096853191 367599.5515 0.009999861 2.000006021 171.4630252 (ac)AS(ph)PSLERPEK ddPTM_K562_Paclitaxel_30min_R1 1 ASPSLERPEK 10 1 Q13601-2;Q13601 Q13601-2 KRR1 KRR1 small subunit processome component homolog 1 AS(0.947)PS(0.053)LERPEK 42.864 0.028684 211160000 3784.7 4592.1 6187.3 4268.9 3472.6 3650.5 3746.5 4302 3428.9 4928.9 TRUE FALSE 3837.697477 5093.481007 4625.239591 3995.111861 3945.626912 4297.864919 4457.378817 3936.518248 3758.261166 3924.387474 0.977909929 1.297904715 1.178588919 1.018021764 1.005412166 1.095168341 1.135815168 1.003091125 0.95766822 1 11.93825178 -7.293785054 0.438192888 0.984890166 1.159710477 0.201659373 0.091971309 2.022692403 0.817060367 0.095323528 0.141178939 5.08E-08 7.293785054 0.174820311 (ac)AS(ph)PSSFTYYCPPSSSPVWSEPLYSLRPEHAR ddPTM_K562_Paclitaxel_30min_R1 1 ASPSSFTYYCPPSSSPVWSEPLYSLRPEHAR 31 1 P49356 P49356 FNTB Protein farnesyltransferase subunit beta 1 AS(0.44)PS(0.44)S(0.094)FT(0.022)Y(0.002)Y(0.002)CPPSSSPVWSEPLYSLRPEHAR 68.231 1.72E-19 54676000 0 0 132.3 0 0 0 0 0 0 0 TRUE FALSE 0 0 98.89922873 0 0 0 0 0 0 0 0 (ac)AS(ph)YFDEHDCEPSDPEQETR ddPTM_K562_Paclitaxel_30min_R1 1 ASYFDEHDCEPSDPEQETR 19 0 F8WBU5;C9J391;C9J1C6;Q9P0P0 F8WBU5 RNF181 E3 ubiquitin-protein ligase RNF181 1 AS(0.544)Y(0.43)FDEHDCEPS(0.026)DPEQET(0.001)R 59.116 5.73E-07 11904000 0 69.25 0 141.32 0 0 0 0 0 0 TRUE FALSE 0 76.81094919 0 132.2563677 0 0 0 0 0 0 0 (ac)ASAVS(ph)PANLPAVLLQPR ddPTM_K562_Paclitaxel_30min_R1 1 ASAVSPANLPAVLLQPR 17 0 P51610-2;P51610;A6NEM2;P51610-4;P51610-3 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 AS(0.264)AVS(0.736)PANLPAVLLQPR 82.102 0.00078079 46878000 0 0 0 0 0 0 0 71.963 0 0 TRUE FALSE 0 0 0 0 0 0 0 65.84929397 0 0 0 (ac)ASCAS(ph)IDIEDATQHLR ddPTM_K562_Paclitaxel_30min_R1 1 ASCASIDIEDATQHLR 16 0 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 AS(0.112)CAS(0.888)IDIEDATQHLR 96.707 1.93E-09 14797000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)ASEDNRVPS(ph)PPPTGDDGGGGGR ddPTM_K562_Paclitaxel_30min_R1 1 ASEDNRVPSPPPTGDDGGGGGR 22 1 A0A494C0R9;E9PEM5;A0A494C1L5;P50851-2;P50851 A0A494C0R9 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 AS(0.008)EDNRVPS(0.977)PPPT(0.016)GDDGGGGGR 88.108 5.24E-05 26585000 0 0 0 0 60.244 0 0 0 0 0 TRUE FALSE 0 0 0 0 68.45025274 0 0 0 0 0 0 (ac)ASLEVS(ph)RSPR ddPTM_K562_Paclitaxel_30min_R1 2 ASLEVSRSPR 10 1 Q5QPJ9;Q5QPK2;O60762 Q5QPJ9 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 1 ASLEVS(0.692)RS(0.308)PR;AS(0.019)LEVS(0.763)RS(0.219)PR 95.618 0.00022762 709285000 0 298.38 0 0 51.604 0 0 0 0 0 TRUE FALSE 0 330.9581375 0 0 58.63333846 0 0 0 0 0 0 (ac)ASLEVSRS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 ASLEVSRSPR 10 1 Q5QPJ9;Q5QPK2;O60762 Q5QPJ9 DPM1 Dolichol-phosphate mannosyltransferase subunit 1 1 ASLEVS(0.078)RS(0.922)PR 124.39 6.05E-30 660750000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)ASPSSFT(ph)YYCPPS(ph)SSPVWSEPLYSLRPEHAR ddPTM_K562_Paclitaxel_30min_R1 1 ASPSSFTYYCPPSSSPVWSEPLYSLRPEHAR 31 1 P49356 P49356 FNTB Protein farnesyltransferase subunit beta 2 AS(0.103)PS(0.103)S(0.103)FT(0.281)Y(0.254)Y(0.254)CPPS(0.566)S(0.16)S(0.16)PVWS(0.016)EPLY(0.001)S(0.001)LRPEHAR 56.172 1.30E-07 9767000 0 0 0 131.18 0 0 0 123.12 0 68.027 TRUE FALSE 0 0 0 122.7667019 0 0 0 112.6601875 0 54.16306006 0 0 0 2.266613109 0 0 0 2.08001888 0 1 5.759237344 -6.091373585 21.3169296 0.745635077 4.00E-27 0.160775235 0.798912488 31.68699373 7387.182608 0.217788999 0.377223088 8.10E-07 6.091373585 -0.745635077 (ac)AT(ph)ALSEEELDNEDYYSLLNVR ddPTM_K562_Paclitaxel_30min_R1 1 ATALSEEELDNEDYYSLLNVR 21 0 B1AK20;Q9NVH1-3;Q9NVH1-2;Q9NVH1 B1AK20 DNAJC11 DnaJ homolog subfamily C member 11 1 AT(0.5)ALS(0.5)EEELDNEDYYSLLNVR 123.02 5.99E-26 2900900 0 61.127 0 0 0 0 0 0 0 0 TRUE FALSE 0 67.80105258 0 0 0 0 0 0 0 0 0 (ac)AT(ph)DTSQGELVHPK ddPTM_K562_Paclitaxel_30min_R1 1 ATDTSQGELVHPK 13 0 B0QZK9;B0QZK8;Q5SSJ5-5;Q5SSJ5 B0QZK9 HP1BP3 Heterochromatin protein 1-binding protein 3 1 AT(0.333)DT(0.333)S(0.333)QGELVHPK 51.927 0.0074186 9778800 1839.9 1986.8 2851.6 2034.2 1853.9 1893.3 1772.7 2205.3 2222.8 2773.2 TRUE FALSE 1865.664277 2203.725543 2131.678312 1903.735517 2106.432567 2229.050172 2109.060571 2017.946 2436.309872 2208.020318 0.844948872 0.998054921 0.965425134 0.862191123 0.953991478 1.009524303 0.955181686 0.913916409 1.103391057 1 11.10853773 -8.073190854 0.660409784 1.024062525 0.926961291 0.261274825 0.061424 1.162933603 0.994267842 0.056649782 0.032001451 8.45E-09 8.073190854 -0.097101235 (ac)ATSATS(ph)PHAPGFPAEGR ddPTM_K562_Paclitaxel_30min_R1 2 ATSATSPHAPGFPAEGR 17 0 Q5VVL2;Q9NUP7-2;Q9NUP7 Q5VVL2 TRMT13 tRNA:m(4)X modification enzyme TRM13 homolog 1 AT(0.001)S(0.003)AT(0.223)S(0.774)PHAPGFPAEGR;AT(0.152)S(0.152)AT(0.169)S(0.527)PHAPGFPAEGR 77.191 3.82E-08 91620000 656.41 768.42 1184.68 905.89 959.29 588.5 782.29 982.52 869.13 1209.03 TRUE FALSE 665.6017652 852.3186942 885.5928821 847.79027 1089.961539 692.8622121 930.7254437 899.0487933 952.6138199 962.6290223 0.691441614 0.885407228 0.919973179 0.880703002 1.132275792 0.71976036 0.966857867 0.933951473 0.989595989 1 9.91083611 -4.839932404 1.326563088 0.941029618 0.27993143 0.374016317 0.097906574 3.8767662 2.832120596 0.027249907 4.533181413 1.45E-05 4.839932404 -0.661098188 (ac)ATTATMATSGS(ph)AR ddPTM_K562_Paclitaxel_30min_R1 2 ATTATMATSGSAR 13 0 I3L3H2;P38919 I3L3H2 EIF4A3 "Eukaryotic initiation factor 4A-III;Eukaryotic initiation factor 4A-III, N-terminally processed" 1 ATTATMAT(0.004)S(0.009)GS(0.986)AR;ATTATMATS(0.002)GS(0.998)AR 181.76 2.43E-55 60913000 255.88 243.214 431.76 161.47 244.867 208 257.87 322.41 273.426 236.262 TRUE FALSE 259.4631095 269.768927 322.7568481 151.1140369 278.222031 244.8858795 306.7994863 295.0192581 299.689789 188.1116747 1.379303596 1.434089231 1.715772551 0.803320884 1.479025858 1.301811171 1.630943357 1.568319768 1.593148269 1 7.555445579 -7.737831812 24.98050386 1.495462949 1.353280829 0.01741712 0.271700827 736.3623512 779186.3123 0.101426664 0.078520695 1.83E-08 7.737831812 -0.14218212 (ac)ATVVVEATEPEPSGSIANPAAST(ph)SPSLSHR ddPTM_K562_Paclitaxel_30min_R1 2 ATVVVEATEPEPSGSIANPAASTSPSLSHR 30 0 P46821;D6RCL2;D6RGJ3;D6RA32 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 ATVVVEATEPEPSGS(0.001)IANPAAS(0.151)T(0.394)S(0.394)PS(0.058)LS(0.002)HR;ATVVVEATEPEPS(0.001)GS(0.002)IANPAAS(0.144)T(0.399)S(0.399)PS(0.053)LS(0.002)HR 94.886 5.07E-25 30367000 127.39 0 235.712 122.17 204.374 120.23 55.112 186.3 0 133.73 TRUE FALSE 129.173853 0 176.2035904 114.334563 232.2131989 141.5511024 65.5692143 170.4726522 0 106.4757526 1.213176239 0 1.654870579 1.073808451 2.180902161 1.329421008 0.615813579 1.601046698 0 1 6.734381117 -8.756696209 24.99997946 0.500000017 1.195397711 0.180361517 0.603725313 192.4842214 1014574.894 0.440438035 0.154270208 1.75E-09 8.756696209 0.695397694 (ac)DDDIAALVVDNGSGMCK ddPTM_K562_Paclitaxel_30min_R1 1 DDDIAALVVDNGSGMCK 17 0 P60709;A0A2R8Y793;A0A2R8YGF8;C9JUM1;E7EVS6;G5E9R0;C9JZR7;C9JTX5 P60709 ACTB "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed" 0 114.24 3.04E-07 8937100 2174.6 2058.9 3129.2 2329.9 1853.9 1827.6 2052.5 2704.3 2392.6 2933.1 FALSE TRUE 2205.051109 2283.697665 2339.194759 2180.470642 2106.432567 2151.699199 2441.95116 2474.552835 2622.41992 2335.33261 0.944212871 0.977889683 1.00165379 0.933687404 0.901983965 0.921367342 1.045654546 1.059614731 1.122932087 1 11.18941233 -7.848591076 5.331801124 1.065002566 0.948241278 0.666866075 0.038160904 0.130810923 6.094762429 0.017213286 0.011551959 1.42E-08 7.848591076 -0.116761288 (ac)ETT(ph)VMT(ph)DAAIFAVMS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 ETTVMTDAAIFAVMSR 16 0 H0YK01 H0YK01 EIF2B2 3 ET(0.513)T(0.584)VMT(0.903)DAAIFAVMS(0.999)R 40.693 0.029062 6442200 251.76 217.24 412.53 203.67 227.95 206.64 143.28 226.17 206.75 183.92 TRUE FALSE 255.2854167 240.9589979 308.3816994 190.6075178 259.0006492 243.2847026 170.466632 206.9554468 226.6092613 146.437003 1.743312219 1.645478894 2.1059001 1.301634927 1.768683078 1.661360842 1.164095334 1.413272892 1.547486336 1 7.194136343 -8.724387183 0.147314118 0.651630332 2.127987997 0.494430299 0.218616046 4.624662923 0.626820893 2.926936156 2.458536785 1.89E-09 8.724387183 1.476357665 (ac)GLRT(ph)T(ph)K ddPTM_K562_Paclitaxel_30min_R1 2 GLRTTK 6 1 Q8WWZ3 Q8WWZ3 EDARADD Ectodysplasin-A receptor-associated adapter protein 2 GLRT(1)T(1)K;GLRT(1)T(1)K 44.945 0.022393 10373600 439.27 559.79 474.8 358.37 427.75 213.76 246.12 414.17 121.71 61.194 TRUE FALSE 445.4211353 620.9097653 354.9308677 335.3857522 486.0167919 251.6673347 292.8199852 378.9836733 133.4007893 48.72262921 9.141976582 12.74376558 7.284723208 6.883572534 9.975175801 5.165306937 6.009938091 7.778391262 2.737963683 1 5.606520082 -7.662288935 0.209441068 8.80E-15 13.29692774 0.676462048 1.847332518 2.347485598 0.329883589 6.121116185 10.91611808 2.18E-08 7.662288935 13.29692774 (ac)GSTSRELSRER ddPTM_K562_Paclitaxel_30min_R1 1 GSTSRELSRER 11 2 H7BZZ8 H7BZZ8 SMTN 0 46.39 0.0231 0 0 186.63 166.8 155.58 225.16 63.536 0 214.94 145.81 113.54 FALSE TRUE 0 207.0068945 124.689277 145.6017952 255.830604 74.80321751 0 196.6795054 159.815702 90.40048568 0 2.289886973 1.379298752 1.610630674 2.829969353 0.827464775 0 2.175646557 1.767863312 1 6.498258618 (ac)HSFVKHLCS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 HSFVKHLCSR 10 1 H3BQ65;Q3V5L5-2 H3BQ65 MGAT5B 1 HSFVKHLCS(1)R 65.278 0.019769 208910000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)IRAFSFPVS(ph)PER ddPTM_K562_Paclitaxel_30min_R1 1 IRAFSFPVSPER 12 1 Q96B18;G5E9H6 Q96B18 DACT3 Dapper homolog 3 1 IRAFS(0.002)FPVS(0.998)PER 56.951 0.01714 0 0 135.47 196.41 167.35 59.881 128.12 0 0 144.49 193.7 TRUE FALSE 0 150.2610727 146.8238663 156.61692 68.03780599 150.8402831 0 0 158.3689101 154.2238337 0 0.974305133 0.952018004 1.015516968 0.44116272 0.97806078 0 0 1.026877016 1 7.268881926 -5.244034307 23.97873875 0.673455623 4.00E-05 0.219446434 0.396292901 3622.16336 4990071.032 0.103927259 2.875016272 5.70E-06 5.244034307 -0.673415617 (ac)KGELMDGDQTS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 KGELMDGDQTSR 12 1 A0A087WTM5 A0A087WTM5 RNF34 1 KGELMDGDQT(0.01)S(0.99)R 54.65 0.024387 0 302.89 357.74 371.27 305.23 352.8 326.31 57.251 416.68 0 438.69 TRUE FALSE 307.1313945 396.799263 277.5382967 285.653914 400.857333 384.1764969 68.11407838 381.2804332 0 349.2847372 0.879315246 1.136033788 0.794590393 0.817825354 1.147652016 1.099894888 0.195010177 1.091603476 0 1 8.448259792 -7.733999397 24.99984792 0.579286594 0.978274453 0.273121297 0.325630961 281.2429157 256232.8508 0.115355117 0.089332356 1.85E-08 7.733999397 0.398987859 (ac)MAAGGSGVGGK ddPTM_K562_Paclitaxel_30min_R1 1 MAAGGSGVGGK 11 0 Q9NZM5 Q9NZM5 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein 0 47.574 0.026764 0 0 238.75 141.79 0 206.81 151.98 151 66.764 190.14 65.769 FALSE TRUE 0 264.8175324 105.9933609 0 234.9810233 178.9315191 179.6514617 61.09198147 208.4037966 52.3652417 0 5.057124226 2.024116712 0 4.48734725 3.416990227 3.430738709 1.16665138 3.979811604 1 5.710537611 -5.215013856 23.87945632 2.72544317 3.87E-05 0.215405343 1.562595522 41185.57592 21183337.42 0.380771656 255.0381768 6.10E-06 5.215013856 -2.725404434 (ac)MDAGFFRGTS(ph)AEQDNR ddPTM_K562_Paclitaxel_30min_R1 2 MDAGFFRGTSAEQDNR 16 1 A9Z1X7;Q8IYB3-2;Q8IYB3;E9PCT1;M0R1E7 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 MDAGFFRGT(0.184)S(0.816)AEQDNR;MDAGFFRGT(0.427)S(0.573)AEQDNR 69.331 0.00060941 20776100 139.4 0 162.16 0 0 119.82 114.34 0 63.893 194.85 TRUE FALSE 141.3520301 0 121.2207024 0 0 141.0683946 136.0354181 0 70.03020813 155.139463 0.911128783 0 0.781366005 0 0 0.909300521 0.876858895 0 0.451401641 1 7.277421903 -7.263414145 24.97892749 0.599346358 0.325491699 0.125041559 0.39791188 453.8956857 5741318.61 0.138137837 0.127954974 5.45E-08 7.263414145 -0.273854659 (ac)MDEPS(ph)PLAQPLELNQHSR ddPTM_K562_Paclitaxel_30min_R1 3 MDEPSPLAQPLELNQHSR 18 0 A0A0C4DGT1;Q13085;A0A087X2F8;A0A087X126 A0A0C4DGT1 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 MDEPS(1)PLAQPLELNQHSR;MDEPS(1)PLAQPLELNQHSR;MDEPS(1)PLAQPLELNQHSR 170.47 6.36E-25 150738600 0 0 0 186.47 72.067 117.34 0 0 255.82 0 TRUE FALSE 0 0 0 174.5106488 81.8837455 138.1486015 0 0 280.392654 0 0 (ac)MDGFAGSLDDS(ph)ISAASTSDVQDR ddPTM_K562_Paclitaxel_30min_R1 1 MDGFAGSLDDSISAASTSDVQDR 23 0 B5MBZ0;Q9HC35;Q9HC35-2 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 MDGFAGS(0.017)LDDS(0.939)IS(0.042)AAS(0.001)TSDVQDR 140.56 3.03E-31 8459400 0 0 0 0 65.402 69.309 0 0 0 0 TRUE FALSE 0 0 0 0 74.31085966 81.599978 0 0 0 0 0 (ac)MDGFAGSLDDSISAAS(ph)TSDVQDR ddPTM_K562_Paclitaxel_30min_R1 1 MDGFAGSLDDSISAASTSDVQDR 23 0 B5MBZ0;Q9HC35;Q9HC35-2 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 MDGFAGSLDDS(0.003)IS(0.009)AAS(0.932)T(0.049)S(0.008)DVQDR 174.63 6.11E-110 10927000 256.18 342.11 272.19 215.37 134.43 150.83 235.17 137.18 311.26 210.61 TRUE FALSE 259.7673104 379.4627267 203.4722681 201.5571322 152.7416419 177.5775827 279.7922798 125.5257027 341.1579137 167.6875664 1.549114916 2.262915104 1.213401044 1.201980186 0.910870407 1.058978829 1.668533248 0.748568934 2.034485449 1 7.38963191 -5.781094086 24.99838546 1.217835044 1.906014893 0.32585795 0.388869993 218.540188 277956.5206 0.095020029 0.198236581 1.66E-06 5.781094086 0.688179849 (ac)MDHTEGS(ph)PAEEPPAHAPSPGK ddPTM_K562_Paclitaxel_30min_R1 1 MDHTEGSPAEEPPAHAPSPGK 21 0 D6R946;Q06330 D6R946 RBPJ Recombining binding protein suppressor of hairless 1 MDHT(0.079)EGS(0.921)PAEEPPAHAPSPGK 59.306 0.017155 0 295.81 224.55 275.25 160.92 243.16 334.96 171.11 202.76 242.64 222.06 TRUE FALSE 299.9522527 249.0671284 205.7597333 150.5993115 276.2825087 394.3604529 203.5772292 185.5342724 265.9466561 176.8040501 1.696523651 1.408718455 1.163772737 0.851786548 1.562648076 2.230494452 1.15142854 1.049377954 1.504188711 1 7.466007513 -9.405256095 0.8078061 1.006614296 1.41411465 0.095079642 0.368620095 3.825640948 4.418784312 0.404014241 0.137496525 3.93E-10 9.405256095 0.407500354 (ac)MDLAAAAEPGAGS(ph)QHLEVR ddPTM_K562_Paclitaxel_30min_R1 3 MDLAAAAEPGAGSQHLEVR 19 0 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 1 MDLAAAAEPGAGS(1)QHLEVR;MDLAAAAEPGAGS(1)QHLEVR;MDLAAAAEPGAGS(1)QHLEVR 166.57 1.03E-165 60590000 0 0 0 71.027 0 0 0 0 0 0 TRUE FALSE 0 0 0 66.47164613 0 0 0 0 0 0 0 (ac)MDLAAAAEPGAGS(ph)QHLEVRDEVAEK ddPTM_K562_Paclitaxel_30min_R1 1 MDLAAAAEPGAGSQHLEVRDEVAEK 25 1 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 1 MDLAAAAEPGAGS(1)QHLEVRDEVAEK 45.511 0.00016174 40787000 2972.9 2617.5 3497.5 2591.9 2321.6 1911.7 2528.6 3231.8 3010.6 3381.9 TRUE FALSE 3014.529772 2903.287502 2614.512868 2425.667135 2637.841225 2250.713153 3008.38865 2957.238418 3299.781582 2692.666924 1.119533109 1.078220064 0.970975224 0.90084188 0.979638886 0.835867642 1.117252425 1.098256302 1.225469646 1 11.39482007 -7.921228882 24.99999919 1.118676584 0.980750014 0.326958915 0.090631137 37.88138936 12020.44721 0.039460448 0.026604228 1.20E-08 7.921228882 -0.13792657 (ac)MDLFGDLPEPERS(ph)PRPAAGK ddPTM_K562_Paclitaxel_30min_R1 1 MDLFGDLPEPERSPRPAAGK 20 2 F8SNU6;E9PC05;F8SNU7;Q9H0C8 F8SNU6 ILKAP2;ILKAP;ILKAP3 Integrin-linked kinase-associated serine/threonine phosphatase 2C 1 MDLFGDLPEPERS(1)PRPAAGK 43.37 0.021731 31445000 3830.1 3328.8 4722.9 3678.8 3065.4 3182.6 2638.1 3524.7 3207.9 4419.8 TRUE FALSE 3883.733217 3692.249641 3530.545483 3442.858234 3482.959378 3746.989424 3138.665703 3225.254735 3516.033128 3519.042334 1.103633559 1.049220012 1.003268829 0.9783509 0.989746371 1.064775319 0.891909049 0.9165149 0.999144879 1 11.78096715 -2.000005141 0.454059064 0.962546739 4.377707063 0.459173464 0.044488201 79.9363295 0.956323426 0.028665976 253.6876242 0.009999882 2.000005141 3.415160325 (ac)MDNLS(ph)SEEIQQR ddPTM_K562_Paclitaxel_30min_R1 2 MDNLSSEEIQQR 12 0 H3BM38;O00161;H3BNG6;H3BU94;H3BNE1;H3BR18;H3BPJ0;O00161-2 H3BM38 SNAP23 Synaptosomal-associated protein;Synaptosomal-associated protein 23 1 MDNLS(0.936)S(0.064)EEIQQR;MDNLS(0.909)S(0.091)EEIQQR 134.08 8.83E-05 22984000 391.75 198.641 517.11 513.45 545.78 552.52 236.505 507.88 542.14 548.29 TRUE FALSE 397.2357087 220.3292961 386.559185 480.5196151 620.1244761 650.5016642 281.3805891 464.7324239 594.2149693 436.548197 0.909946969 0.504707837 0.885490279 1.100725231 1.420517781 1.490102739 0.6445579 1.064561547 1.36116693 1 8.769997133 -6.142347033 3.177332923 1.162676217 0.705809874 0.354274517 0.246381998 0.283059573 5.387594123 0.072704578 0.139367738 7.21E-07 6.142347033 -0.456866343 (ac)MDNYADLS(ph)DTELTTLLR ddPTM_K562_Paclitaxel_30min_R1 2 MDNYADLSDTELTTLLR 17 0 P50402;Q5HY57;F8WEQ1 P50402 EMD Emerin 1 MDNYADLS(0.921)DT(0.077)ELT(0.001)T(0.001)LLR;MDNYADLS(0.993)DT(0.007)ELTTLLR 135.57 2.98E-08 52154200 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)MDNYADLS(ph)DTELTTLLRR ddPTM_K562_Paclitaxel_30min_R1 3 MDNYADLSDTELTTLLRR 18 1 P50402;Q5HY57;F8WEQ1 P50402 EMD Emerin 1 MDNY(0.005)ADLS(0.924)DT(0.069)ELT(0.001)TLLRR;MDNYADLS(0.898)DT(0.102)ELTTLLRR;MDNY(0.02)ADLS(0.897)DT(0.083)ELTTLLRR 81.651 0.0018199 131310000 60.449 74.702 0 0 0 65.173 118.74 0 0 57.035 TRUE FALSE 61.2954725 82.85821699 0 0 0 76.73051648 141.2702951 0 0 45.41123569 1.349786492 1.824619298 0 0 0 1.689681316 3.110910615 0 0 1 5.50497739 -7.271172055 24.90993811 1.219542859 0.630435356 0.063217313 0.997845618 2139.493181 5475831.055 0.385427534 0.344154133 5.36E-08 7.271172055 -0.589107503 (ac)MDRNPS(ph)PPPPGR ddPTM_K562_Paclitaxel_30min_R1 2 MDRNPSPPPPGR 12 1 E9PL53;E9PMD2;J3KND1;E9PRZ1;Q96ER3 E9PL53 SAAL1 Protein SAAL1 1 MDRNPS(1)PPPPGR;MDRNPS(1)PPPPGR 91.202 0.0023372 140926000 313.24 260.716 674.22 479.49 210.172 262.873 281.2 364.42 512.09 426.9 TRUE FALSE 317.6263264 289.1818546 504.0048224 448.7376575 238.8009846 309.4898356 334.556232 333.4602464 561.2785326 339.8975457 0.934476669 0.850791241 1.48281395 1.320214468 0.702567546 0.910538601 0.984285519 0.98106106 1.651316815 1 8.408956134 -8.702057551 24.99998144 1.325680491 1.025048149 0.181879345 0.258466954 114.0751631 48025.60765 0.179598593 0.067881791 1.99E-09 8.702057551 -0.300632342 (ac)MDS(ph)AGQDINLNSPNKGLLSDSMTDVPVDTGVAAR ddPTM_K562_Paclitaxel_30min_R1 1 MDSAGQDINLNSPNKGLLSDSMTDVPVDTGVAAR 34 1 O43399-5;O43399-7;A0A087WYR3;O43399-4;O43399;O43399-3;A0A087WZ51;O43399-2 O43399-5 TPD52L2 Tumor protein D54 1 MDS(0.902)AGQDINLNS(0.097)PNKGLLS(0.001)DSMTDVPVDTGVAAR 60.031 2.02E-14 22904000 239.77 130.36 199.72 184.86 136.91 53.266 156.62 177.09 174.3 249.5 TRUE FALSE 243.1275198 144.5931456 149.2982159 173.003907 155.5594599 62.71197721 186.3378274 162.0450991 191.0422938 198.651763 1.223888054 0.727872451 0.751557467 0.870890368 0.783076161 0.315687997 0.938012452 0.815724445 0.961694429 1 7.634097787 -11.09975448 15.92323472 0.999999995 0.804942142 0.053385143 0.217001726 0 0 0.209440618 0.050796811 7.95E-12 11.09975448 -0.195057854 (ac)MDTQAGS(ph)VDEENGR ddPTM_K562_Paclitaxel_30min_R1 1 MDTQAGSVDEENGR 14 0 Q9UBL3-2;Q9UBL3-3 Q9UBL3-2 1 MDTQAGS(1)VDEENGR 168.1 1.64E-14 8982600 0 0 109.77 0 126.35 0 0 195.23 0 0 TRUE FALSE 0 0 82.05720588 0 143.5610091 0 0 178.6439929 0 0 0 (ac)MDVAES(ph)PERDPHSPEDEEQPQGLSDDDILR ddPTM_K562_Paclitaxel_30min_R1 1 MDVAESPERDPHSPEDEEQPQGLSDDDILR 30 1 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 MDVAES(0.99)PERDPHS(0.01)PEDEEQPQGLSDDDILR 104.96 9.98E-24 56586000 0 58.083 0 0 0 0 0 0 0 0 TRUE FALSE 0 64.42469836 0 0 0 0 0 0 0 0 0 (ac)MDVHDLFR ddPTM_K562_Paclitaxel_30min_R1 1 MDVHDLFR 8 0 A0A087X1P7;A0A087WTD6;A0A087X069;Q9Y2R4 A0A087X1P7 DDX52 Probable ATP-dependent RNA helicase DDX52 0 79.469 0.022689 0 248.94 286.44 289.9 259.13 316.92 337.88 375.68 295.86 311.16 251.89 FALSE TRUE 252.425928 317.7144879 216.7111596 242.5105616 360.0898695 397.7982739 446.9633188 270.7248463 341.0483083 200.5546797 1.258638933 1.58417888 1.080558977 1.209199217 1.795469794 1.98349036 2.228635699 1.349880475 1.700525307 1 7.64785182 -6.763178832 24.9615542 1.736800612 1.290176096 0.234644964 0.337346535 59.98633474 860822.1649 0.102799865 0.122681706 1.73E-07 6.763178832 -0.446624516 (ac)MEALGPGGDRAS(ph)PASSTSSLDLWHLSMR ddPTM_K562_Paclitaxel_30min_R1 1 MEALGPGGDRASPASSTSSLDLWHLSMR 28 1 C9JXU1;A6NN40;Q2M3G4-2;Q2M3G4 C9JXU1 SHROOM1 Protein Shroom1 1 MEALGPGGDRAS(0.998)PAS(0.001)STSSLDLWHLSMR 84.646 2.53E-17 13933000 49.771 61.602 126.73 158.74 0 64.547 0 130.16 160.31 123.68 TRUE FALSE 50.46794756 68.32791468 94.73544412 148.5591269 0 75.99350417 0 119.1020956 175.7084918 98.47394811 0.512500499 0.693867932 0.962035604 1.508613494 0 0.771711764 0 1.209478221 1.784314483 1 6.621670196 -8.506381836 24.36610381 1.427070419 0.660424768 0.337234173 0.450345673 553.8235154 818011.4087 0.256556479 0.117855509 3.12E-09 8.506381836 -0.766645651 (ac)MEDLDQS(ph)PLVSSSDS(ph)PPRPQPAFK ddPTM_K562_Paclitaxel_30min_R1 1 MEDLDQSPLVSSSDSPPRPQPAFK 24 1 Q9NQC3-5;Q9NQC3;Q9NQC3-2;Q9NQC3-4 Q9NQC3-5 RTN4 Reticulon-4 2 MEDLDQS(0.988)PLVS(0.018)S(0.018)S(0.017)DS(0.959)PPRPQPAFK 53.033 0.0053581 9408100 1898.9 1788.7 2653.6 2031.9 1472.4 1611.5 1628.9 1949 1787.1 2422.5 TRUE FALSE 1925.490459 1983.996315 1983.665861 1901.583028 1672.965808 1897.276898 1937.975272 1783.420285 1958.75894 1928.79317 0.99828768 1.028620562 1.028449235 0.98589266 0.867364025 0.983660108 1.004760542 0.924630133 1.01553602 1 10.91348273 -6.518384048 24.99980178 0.96155273 1.017419583 0.234426169 0.041947556 259.4842628 1443274.279 0.012291052 0.016292107 3.03E-07 6.518384048 0.055866853 (ac)MEDLDQSPLVSS(ph)SDSPPRPQPAFK ddPTM_K562_Paclitaxel_30min_R1 2 MEDLDQSPLVSSSDSPPRPQPAFK 24 1 Q9NQC3-5;Q9NQC3;Q9NQC3-2;Q9NQC3-4 Q9NQC3-5 RTN4 Reticulon-4 1 MEDLDQS(0.003)PLVS(0.079)S(0.819)S(0.068)DS(0.032)PPRPQPAFK;MEDLDQS(0.111)PLVS(0.138)S(0.607)S(0.033)DS(0.111)PPRPQPAFK 88.709 1.17E-18 875740000 6672.5 6748.7 9454.8 7470.1 6938 6300.5 6706.2 8182.9 7976.7 8460 TRUE FALSE 6765.935586 7485.545889 7067.818805 6991.001221 7883.073061 7417.805212 7978.666441 7487.711569 8742.897676 6735.847356 1.004466881 1.11129981 1.049284289 1.037879995 1.170316464 1.101243069 1.184508202 1.111621326 1.297965529 1 12.71764373 -6.760146629 24.99915673 1.149716823 1.054955492 0.270812132 0.07475031 45.00388084 870267.1113 0.021182702 0.025871226 1.74E-07 6.760146629 -0.094761332 (ac)MEDS(ph)MDMDMSPLRPQNYLFGCELK ddPTM_K562_Paclitaxel_30min_R1 5 MEDSMDMDMSPLRPQNYLFGCELK 24 1 P06748-2;P06748;P06748-3 P06748-2 NPM1 Nucleophosmin 1 MEDS(0.99)MDMDMS(0.009)PLRPQNY(0.001)LFGCELK;MEDS(0.861)MDMDMS(0.137)PLRPQNY(0.002)LFGCELK;MEDS(0.89)MDMDMS(0.098)PLRPQNY(0.012)LFGCELK;MEDS(0.642)MDMDMS(0.321)PLRPQNY(0.037)LFGCELK;MEDS(0.998)MDMDMS(0.002)PLRPQNYLFGCELK 71.174 0.00012266 237943000 17085.88 15009.83 19645.65 15553.69 13032.03 11893.62 16540.6 21113.26 15454.7 26274.6 TRUE FALSE 17325.13503 16648.654 14685.86268 14556.14594 14807.21312 14002.78651 19679.0925 19319.55678 16939.19299 20919.8221 0.828168373 0.795831529 0.702007054 0.695806392 0.707807794 0.669354952 0.940691198 0.923504831 0.809719744 1 14.35258296 -7.768029109 24.99905063 0.912104378 0.73174459 0.677215842 0.062611067 100.768075 382273.028 0.026875952 0.018595762 1.71E-08 7.768029109 -0.180359789 (ac)MEDSMDMDMS(ph)PLRPQNYLFGCELK ddPTM_K562_Paclitaxel_30min_R1 1 MEDSMDMDMSPLRPQNYLFGCELK 24 1 P06748-2;P06748;P06748-3 P06748-2 NPM1 Nucleophosmin 1 MEDS(0.497)MDMDMS(0.491)PLRPQNY(0.012)LFGCELK 50.215 0.010182 21322000 1284 1023.8 1601.1 1454.7 997.87 986.28 1607.9 1938.3 1400.5 2935.3 TRUE FALSE 1301.979961 1135.581946 1196.882503 1361.402053 1133.796788 1161.18291 1912.990631 1773.629317 1535.024283 2337.084249 0.557095861 0.485896881 0.512126383 0.582521599 0.485133041 0.496851113 0.8185373 0.75890688 0.656811702 1 11.19049403 -8.790959782 0.418413791 1.009158414 0.486533155 0.750950234 0.082068282 0.575223903 0.281147538 0.114817506 0.069497845 1.62E-09 8.790959782 -0.522625259 (ac)MEEAS(ph)EGGGNDRVR ddPTM_K562_Paclitaxel_30min_R1 2 MEEASEGGGNDRVR 14 1 B8ZZT4;Q9BV40 B8ZZT4 VAMP8 Vesicle-associated membrane protein 8 1 MEEAS(1)EGGGNDRVR;MEEAS(1)EGGGNDRVR 80.318 0.00010023 19365300 0 70.653 422.85 0 163.47 122.96 66.445 192.63 109.25 262.89 TRUE FALSE 0 78.36713347 316.0962878 0 185.7373816 144.7652296 79.05259188 176.2648791 119.7439506 209.3128737 0 0.37440188 1.510161712 0 0.887367214 0.691621241 0.377676683 0.842111983 0.572081155 1 7.709517236 -8.75673523 0.081789626 1.443607686 3.25E-21 0.11086767 0.416663922 47.6701374 3.365843734 29.91308437 26.57625935 1.75E-09 8.75673523 -1.443607686 (ac)MEEGGRDKAPVQPQQS(ph)PAAAPGGTDEKPSGK ddPTM_K562_Paclitaxel_30min_R1 1 MEEGGRDKAPVQPQQSPAAAPGGTDEKPSGK 31 3 Q13200;C9JPC0;F8WBS8 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 1 MEEGGRDKAPVQPQQS(0.997)PAAAPGGT(0.002)DEKPSGK 41.986 0.0016853 13652000 1008.7 836.28 2686.6 996.81 601.3 671.2 526.52 1127.9 1066.8 1872.2 TRUE FALSE 1022.824912 927.5878785 2008.334603 932.8790682 683.2072401 790.2278959 626.4244214 1032.077855 1169.270907 1490.644612 0.686162821 0.622272989 1.347292699 0.625822587 0.458330064 0.530124947 0.420237269 0.692370164 0.784406221 1 10.54172063 -6.476375366 24.99751152 0.608330811 0.880214518 0.163365823 0.240378327 659.7004741 354616.1008 0.067704275 0.100417815 3.34E-07 6.476375366 0.271883707 (ac)MEEIDRFQDPAAASIS(ph)DGDCDAR ddPTM_K562_Paclitaxel_30min_R1 2 MEEIDRFQDPAAASISDGDCDAR 23 1 Q8IW50-3;A0A0A0MRW1;Q8IW50-2;A0A0A0MRW0;Q8IW50-4 Q8IW50-3 FAM219A 1 MEEIDRFQDPAAAS(0.256)IS(0.744)DGDCDAR;MEEIDRFQDPAAAS(0.271)IS(0.729)DGDCDAR 43.823 0.023933 92764000 0 0 149.62 0 0 0 0 66.092 139.23 0 TRUE FALSE 0 0 111.8465805 0 0 0 0 60.47707207 152.6036636 0 0 (ac)MEEQPQMQDADEPADS(ph)GGEGR ddPTM_K562_Paclitaxel_30min_R1 2 MEEQPQMQDADEPADSGGEGR 21 0 D6RBJ6;B3KVZ3;Q9H3R5 D6RBJ6 CENPH Centromere protein H 1 MEEQPQMQDADEPADS(1)GGEGR;MEEQPQMQDADEPADS(1)GGEGR 119.87 2.49E-07 8185300 0 66.744 382.16 0 0 114.88 0 0 165.28 0 TRUE FALSE 0 74.03133563 285.6789815 0 0 135.252355 0 0 181.1558825 0 0 (ac)MEITIRNS(ph)PYR ddPTM_K562_Paclitaxel_30min_R1 2 MEITIRNSPYR 11 1 P21127;A0A0D9SEN2;A0A0D9SER5;A0A0D9SEI3;P21127-8;P21127-2;P21127-6;P21127-3;P21127-9;Q9UQ88-9;A0A087X1I0;A0A087WYI9 P21127 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 MEIT(0.025)IRNS(0.975)PYR;MEIT(0.003)IRNS(0.995)PY(0.002)R 76.165 0.00034467 43207000 1015.71 1059.56 1024.76 1096.52 977.96 953.05 683.17 1081.23 1001.95 1106.65 TRUE FALSE 1029.933074 1175.246344 766.0466639 1026.194115 1111.174709 1122.060036 812.7979411 989.3727627 1098.191774 881.1141225 1.168898611 1.33381853 0.869406862 1.164655166 1.261101917 1.273455966 0.922466137 1.122865628 1.246367237 1 9.78318508 -12.33933005 2.215886108 0.163214761 1.14814348 0.092088298 0.142321015 4170834.695 1301217.873 17022878.05 0.036820681 4.58E-13 12.33933005 0.984928719 (ac)MENQVLT(ph)PHVYWAQR ddPTM_K562_Paclitaxel_30min_R1 1 MENQVLTPHVYWAQR 15 0 H3BS72;Q9P035;Q9P035-2 H3BS72 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 1 MENQVLT(1)PHVYWAQR 48.405 0.013106 7944800 0 0 0 209.21 119.57 147.09 195.91 193.99 139.54 0 TRUE FALSE 0 0 0 195.792207 135.8574583 173.1743463 233.0828998 177.5093387 152.9434405 0 0 (ac)MEPETALWGPDLQGPEQS(ph)PNDAHR ddPTM_K562_Paclitaxel_30min_R1 2 MEPETALWGPDLQGPEQSPNDAHR 24 0 Q9UEG4 Q9UEG4 ZNF629 Zinc finger protein 629 1 MEPETALWGPDLQGPEQS(1)PNDAHR;MEPETALWGPDLQGPEQS(1)PNDAHR 88.986 4.34E-05 7958600 0 0 0 74.198 0 71.016 0 0 0 0 TRUE FALSE 0 0 0 69.43927238 0 83.60969049 0 0 0 0 0 (ac)MES(ph)LRGYT(ph)HS(ph)DIGYR ddPTM_K562_Paclitaxel_30min_R1 1 MESLRGYTHSDIGYR 15 1 Q8N693 Q8N693 ESX1 Homeobox protein ESX1;Homeobox protein ESX1-N;Homeobox protein ESX1-C 3 MES(0.783)LRGY(0.257)T(0.965)HS(0.789)DIGY(0.206)R 48.044 0.030947 0 392.77 441.55 445.29 399.34 392.71 317.2 353.09 392.79 315.9 333.89 TRUE FALSE 398.2699918 489.7599222 332.8710322 373.7281198 446.2037506 373.4509663 420.0869842 359.4200378 346.2436065 265.8430347 1.498139653 1.842289841 1.252133736 1.4058225 1.678448153 1.404779955 1.580206849 1.352000959 1.302436255 1 8.054430857 -9.041431439 0.983727643 1.00104492 1.528009561 0.521892106 0.154459228 0.493009255 1.067332571 0.147330597 0.049491221 9.09E-10 9.041431439 0.52696464 (ac)MESRDPAQPMS(ph)PGEATQSGARPADR ddPTM_K562_Paclitaxel_30min_R1 7 MESRDPAQPMSPGEATQSGARPADR 25 2 Q9BQG0;Q9BQG0-2 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 MESRDPAQPMS(0.583)PGEAT(0.077)QS(0.34)GARPADR;MES(0.058)RDPAQPMS(0.892)PGEAT(0.044)QS(0.006)GARPADR;MES(0.155)RDPAQPMS(0.554)PGEAT(0.224)QS(0.067)GARPADR;MES(0.084)RDPAQPMS(0.719)PGEAT(0.158)QS(0.04)GARPADR;MES(0.082)RDPAQPMS(0.896)PGEAT(0.019)QS(0.003)GARPADR;MES(0.004)RDPAQPMS(0.887)PGEAT(0.099)QS(0.01)GARPADR;MES(0.002)RDPAQPMS(0.556)PGEAT(0.429)QS(0.013)GARPADR 66.644 6.55E-05 1096264000 158.61 141.21 296.71 151.62 192.56 307.22 105.77 263.22 181.07 233.671 TRUE FALSE 160.8310294 156.6277853 221.8018908 141.8957718 218.7899321 361.7011534 125.8393053 240.857818 198.4625825 186.0487219 0.864456513 0.841864345 1.192171 0.762680713 1.175981914 1.944120603 0.676378231 1.294595392 1.066723708 1 7.53953667 -5.757752135 24.85000634 1.149703994 0.853160292 0.109355093 0.325263246 187.289865 1262174.297 0.083939412 0.204806111 1.75E-06 5.757752135 -0.296543702 (ac)METDESPS(ph)PLPCGPAGEAVMESR ddPTM_K562_Paclitaxel_30min_R1 1 METDESPSPLPCGPAGEAVMESR 23 0 Q8WYQ5-3;Q8WYQ5;C9JSD5;Q8WYQ5-2 Q8WYQ5-3 DGCR8 Microprocessor complex subunit DGCR8 1 MET(0.161)DES(0.161)PS(0.679)PLPCGPAGEAVMESR 93.909 1.66E-06 6269000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)METMAS(ph)PGKDNYR ddPTM_K562_Paclitaxel_30min_R1 1 METMASPGKDNYR 13 1 S4R3E5;O60684 S4R3E5 KPNA6 Importin subunit alpha-7 1 MET(0.003)MAS(0.997)PGKDNYR 66.215 0.013428 16966000 2216.6 1828.3 2575.3 1942.6 1411.4 1579.7 1335.9 1927.9 1854.7 2407.9 TRUE FALSE 2247.639239 2027.919977 1925.133664 1818.010331 1603.656575 1859.837615 1589.380051 1764.112861 2032.852222 1917.168658 1.172374287 1.057768167 1.004154567 0.948278767 0.836471308 0.970095983 0.829024637 0.920165711 1.060340838 1 10.90476154 -5.548648159 1.301690133 0.92723001 1.207903633 0.552003748 0.066452968 0.60731051 1.318511488 0.020323618 0.198988492 2.83E-06 5.548648159 0.280673623 (ac)MEVAEPS(ph)S(ph)PTEEEEEEEEHSAEPRPR ddPTM_K562_Paclitaxel_30min_R1 3 MEVAEPSSPTEEEEEEEEHSAEPRPR 26 1 M0R2K3;M0R3H9;M0QXG9;M0R3F4;M0R2A4;M0R193;M0R0I0;J3KQS6;Q9NWV8-3;Q9NWV8 M0R2K3 BABAM1 BRISC and BRCA1-A complex member 1 2 MEVAEPS(0.937)S(0.792)PT(0.271)EEEEEEEEHSAEPRPR;MEVAEPS(0.979)S(0.932)PT(0.089)EEEEEEEEHSAEPRPR;MEVAEPS(0.934)S(0.789)PT(0.276)EEEEEEEEHS(0.001)AEPRPR 54.626 0.00027206 105758000 124.52 68.531 221.39 0 62.043 0 253.64 266.54 105.57 403.45 TRUE FALSE 126.2636642 76.01344634 165.4973564 0 70.494307 0 301.7668659 243.8957633 115.7104702 321.2266685 0.393067191 0.236634918 0.515204286 0 0.21945347 0 0.939420339 0.759263745 0.360214395 1 8.327447862 -7.763836655 24.99999983 0.744663288 0.230198732 0.597830548 0.215646897 47.06062199 490760.4531 0.087164921 0.061911459 1.72E-08 7.763836655 -0.514464556 (ac)MEVAEPS(ph)SPTEEEEEEEEHSAEPRPR ddPTM_K562_Paclitaxel_30min_R1 6 MEVAEPSSPTEEEEEEEEHSAEPRPR 26 1 M0R2K3;M0R3H9;M0QXG9;M0R3F4;M0R2A4;M0R193;M0R0I0;J3KQS6;Q9NWV8-3;Q9NWV8 M0R2K3 BABAM1 BRISC and BRCA1-A complex member 1 1 MEVAEPS(0.333)S(0.333)PT(0.333)EEEEEEEEHSAEPRPR;MEVAEPS(0.445)S(0.445)PT(0.109)EEEEEEEEHSAEPRPR;MEVAEPS(0.442)S(0.442)PT(0.115)EEEEEEEEHSAEPRPR;MEVAEPS(0.333)S(0.333)PT(0.333)EEEEEEEEHSAEPRPR;MEVAEPS(0.41)S(0.41)PT(0.18)EEEEEEEEHSAEPRPR;MEVAEPS(0.333)S(0.333)PT(0.333)EEEEEEEEHSAEPRPR 127.5 2.37E-14 1552330000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)MEVKPPPGRPQPDS(ph)GR ddPTM_K562_Paclitaxel_30min_R1 2 MEVKPPPGRPQPDSGR 16 2 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 1 MEVKPPPGRPQPDS(1)GR;MEVKPPPGRPQPDS(1)GR 82.259 1.80E-08 42327000 5020.3 5699.2 7479 5875.7 4901.4 4398.8 4641.3 5728.1 3979.1 7229.2 TRUE FALSE 5090.599689 6321.457929 5590.833951 5498.858901 5569.053661 5178.865418 5521.962446 5241.462151 4361.310334 5755.885072 0.884416493 1.098259929 0.971324806 0.9553455 0.967540802 0.899751359 0.959359399 0.910626617 0.757713241 1 12.49082207 -7.294475475 0.920869891 0.888607218 0.991941793 0.17044229 0.076091418 0.88257289 1.595704221 0.045713001 0.040719776 5.08E-08 7.294475475 0.103334574 (ac)MFPAAPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 MFPAAPSPR 9 0 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 1 MFPAAPS(1)PR;MFPAAPS(1)PR 89.403 0.0089196 1811100 0 0 158.51 0 109.91 0 0 0 0 0 TRUE FALSE 0 0 118.4921901 0 124.8816028 0 0 0 0 0 0 (ac)MHGHGGY(ph)DSDFS(ph)DDER ddPTM_K562_Paclitaxel_30min_R1 2 MHGHGGYDSDFSDDER 16 0 Q70Z53-2;Q70Z53-4;Q70Z53-5;Q70Z53-3;Q70Z53 Q70Z53-2 FRA10AC1 Protein FRA10AC1 2 MHGHGGY(0.903)DS(0.144)DFS(0.953)DDER;MHGHGGY(0.583)DS(0.421)DFS(0.996)DDER 59.513 2.22E-07 41200000 200.62 66.712 242.232 183.76 222.345 170.368 0 187.61 167.885 180.954 TRUE FALSE 203.429299 73.99584177 181.0775357 171.9744561 252.6321533 200.5803727 0 171.6713595 184.0111044 144.0754755 1.411963405 0.513590821 1.256824141 1.193641427 1.753470898 1.392189559 0 1.191537692 1.277185474 1 7.170680971 (ac)MHGHGGYDS(ph)DFS(ph)DDER ddPTM_K562_Paclitaxel_30min_R1 4 MHGHGGYDSDFSDDER 16 0 Q70Z53-2;Q70Z53-4;Q70Z53-5;Q70Z53-3;Q70Z53 Q70Z53-2 FRA10AC1 Protein FRA10AC1 2 MHGHGGY(0.055)DS(0.957)DFS(0.989)DDER;MHGHGGY(0.009)DS(0.991)DFS(1)DDER;MHGHGGY(0.208)DS(0.802)DFS(0.99)DDER;MHGHGGY(0.422)DS(0.767)DFS(0.811)DDER 77.13 7.38E-08 51762800 474.477 560.8 780.264 797.5 511.3 613.13 465.25 644.75 713.13 693.03 TRUE FALSE 481.1211419 622.0300405 583.276703 746.3519195 580.9477164 721.8599967 553.5287587 589.9744631 781.6293228 551.7901056 0.871927816 1.127294662 1.057062635 1.352601128 1.052841851 1.308214826 1.003150932 1.069200874 1.416533778 1 9.107975777 -4.862999903 1.440736426 1.164864146 0.410184524 0.262341059 0.143154175 4.472523438 3.931631023 0.038451646 6.41832631 1.37E-05 4.862999903 -0.754679622 (ac)MHPAGLAAAAAGT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 MHPAGLAAAAAGTPR 15 0 Q5BJH7-4;Q5BJH7-5;Q5BJH7-3;Q5BJH7 Q5BJH7-4 YIF1B Protein YIF1B 1 MHPAGLAAAAAGT(1)PR 69.331 0.0058274 0 167.22 0 163.5 0 0 146.5 131.63 112.4 0 144.53 TRUE FALSE 169.5615959 0 122.2224029 0 0 172.479718 156.6061053 102.8509184 0 115.0747067 1.473491446 0 1.06211353 0 0 1.498849947 1.360908143 0.893775195 0 1 6.846426955 -7.258042648 24.98265538 0.969705186 0.481607164 0.12536441 0.582812488 625.475358 4600322.878 0.198093916 0.190478297 5.52E-08 7.258042648 -0.488098022 (ac)MHRAPSPT(ph)AEQPPGGGDSAR ddPTM_K562_Paclitaxel_30min_R1 1 MHRAPSPTAEQPPGGGDSAR 20 1 Q15742-2;Q15742-3;Q15742 Q15742-2 NAB2 NGFI-A-binding protein 2 1 MHRAPS(0.068)PT(0.932)AEQPPGGGDSAR 52.866 0.0068335 8356400 332.1 296.66 363.98 420.72 293.31 385.76 222.01 419.72 366.79 439.19 TRUE FALSE 336.7504246 329.050342 272.0887474 393.7369023 333.2637878 454.1691197 264.1352385 384.0621662 402.0218184 349.6828369 0.963016737 0.940996547 0.778101521 1.125982921 0.953045882 1.298803006 0.755356599 1.098315747 1.14967558 1 8.449903177 -6.272374599 24.98464404 1.052044184 0.898734091 0.213202627 0.141079124 1124.183782 2568517.826 0.03858193 0.057851991 5.34E-07 6.272374599 -0.153310093 (ac)MHRAPSPT(ph)AEQPPGGGDSARR ddPTM_K562_Paclitaxel_30min_R1 1 MHRAPSPTAEQPPGGGDSARR 21 2 Q15742-2;Q15742-3;Q15742 Q15742-2 NAB2 NGFI-A-binding protein 2 1 MHRAPS(0.296)PT(0.701)AEQPPGGGDS(0.003)ARR 61.437 0.00041765 11675000 67.284 111.28 109.12 104.11 175.24 41.091 0 60.303 128.53 0 TRUE FALSE 68.22618359 123.4299267 81.57130642 97.43285058 199.1106548 48.3779119 0 55.17988375 140.8758808 0 0 (ac)MKVY(ph)IYS(ph)SGSVEAQK ddPTM_K562_Paclitaxel_30min_R1 1 MKVYIYSSGSVEAQK 15 1 Q9UHY7-2 Q9UHY7-2 2 MKVY(1)IY(0.003)S(0.496)S(0.496)GS(0.006)VEAQK 62.813 0.0072609 19991000 0 0 0 0 65.952 169.61 59.864 67.286 0 0 TRUE FALSE 0 0 0 0 74.93577898 199.6879521 71.22288149 61.56963431 0 0 0 (ac)MLQQDS(ph)NDDTEDVSLFDAEEETTNRPR ddPTM_K562_Paclitaxel_30min_R1 2 MLQQDSNDDTEDVSLFDAEEETTNRPR 27 1 E5RIS5;I3L376;E5RGC5;A0A0A6YYB9;J3KS67;C9JYS5;Q96ET8-2;Q96ET8-3;Q9NYZ1;Q96ET8 E5RIS5 TVP23C;TVP23B;TVP23C-CDRT4 Golgi apparatus membrane protein TVP23 homolog;Golgi apparatus membrane protein TVP23 homolog C;Golgi apparatus membrane protein TVP23 homolog B 1 MLQQDS(0.914)NDDT(0.086)EDVSLFDAEEETTNRPR;MLQQDS(0.729)NDDT(0.271)EDVSLFDAEEETTNRPR 98.76 3.34E-08 21856000 221.329 136.94 427.74 154.5 292.71 155.98 121.42 140.58 112.85 416.07 TRUE FALSE 224.4282889 151.8915723 319.7517468 144.5910615 332.5820576 183.6408629 144.4588111 128.6368515 123.6897467 331.2747056 0.677468835 0.458506399 0.965216303 0.436468765 1.003946429 0.554346166 0.436069548 0.388308704 0.373375162 1 8.371884241 -7.505563406 24.18882247 0.497998847 0.702165213 0.082416004 0.239634158 941.496344 1315236.48 0.080678515 0.069509564 3.12E-08 7.505563406 0.204166366 (ac)MLT(ph)DSGGGGTSFEEDLDSVAPR ddPTM_K562_Paclitaxel_30min_R1 1 MLTDSGGGGTSFEEDLDSVAPR 22 0 Q8IWZ3-6;Q8IWZ3;Q8IWZ3-4;D6RHC4;E9PDP5;Q8IWZ3-5;Q8IWZ3-3;Q8IWZ3-2 Q8IWZ3-6 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 1 MLT(0.547)DS(0.4)GGGGT(0.026)S(0.026)FEEDLDSVAPR 90.334 2.88E-11 10609000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)MLTDSGGGGTS(ph)FEEDLDSVAPR ddPTM_K562_Paclitaxel_30min_R1 1 MLTDSGGGGTSFEEDLDSVAPR 22 0 Q8IWZ3-6;Q8IWZ3;Q8IWZ3-4;D6RHC4;E9PDP5;Q8IWZ3-5;Q8IWZ3-3;Q8IWZ3-2 Q8IWZ3-6 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 1 MLTDS(0.002)GGGGT(0.029)S(0.969)FEEDLDSVAPR 130.77 8.24E-55 8528100 132.42 0 0 0 0 0 0 0 0 0 TRUE FALSE 134.2742886 0 0 0 0 0 0 0 0 0 0 (ac)MMCS(ph)RVPSEQS(ph)SGTSLLPK ddPTM_K562_Paclitaxel_30min_R1 1 MMCSRVPSEQSSGTSLLPK 19 1 E9PIZ7;E9PIY5;E9PMK1;E9PL86;E9PSA0;Q96BU1-2;Q96BU1 E9PIZ7 S100PBP S100P-binding protein 2 MMCS(0.921)RVPS(0.08)EQS(0.451)S(0.396)GT(0.08)S(0.072)LLPK 49.662 0.020272 22935000 0 295.26 0 0 0 0 0 0 0 0 TRUE FALSE 0 327.4974853 0 0 0 0 0 0 0 0 0 (ac)MNLLPNIES(ph)PVTR ddPTM_K562_Paclitaxel_30min_R1 5 MNLLPNIESPVTR 13 0 E9PM69;P17980 E9PM69 PSMC3 26S protease regulatory subunit 6A 1 MNLLPNIES(0.5)PVT(0.5)R;MNLLPNIES(0.971)PVT(0.029)R;MNLLPNIES(0.878)PVT(0.122)R;MNLLPNIES(0.886)PVT(0.114)R;MNLLPNIES(0.733)PVT(0.267)R 119.17 7.97E-05 62092200 236.347 263.93 629.77 491.77 317.423 177.41 543.3 606.15 551.95 493.55 TRUE FALSE 239.6565872 292.74677 470.7767746 460.2300733 360.6613866 208.8711725 646.3883388 554.653774 604.9672637 392.9642391 0.609868694 0.744970511 1.198014292 1.17117546 0.917796967 0.531527177 1.64490372 1.411461194 1.539496991 1 8.618254219 -7.770957349 24.99999998 1.43325393 0.888728006 0.513516704 0.254277119 172.2548138 452441.8031 0.109036785 0.074589309 1.69E-08 7.770957349 -0.544525924 (ac)MNNTAAS(ph)PMSTATSSSGR ddPTM_K562_Paclitaxel_30min_R1 1 MNNTAASPMSTATSSSGR 18 0 O75486 O75486 SUPT3H Transcription initiation protein SPT3 homolog 1 MNNTAAS(0.99)PMS(0.008)T(0.001)ATSSSGR 119.8 1.71E-10 9803000 246.24 0 166.42 199.35 236.74 0 120.02 224.74 0 136.72 TRUE FALSE 249.6881197 0 124.4052127 186.5645833 268.987996 0 142.7931685 205.6469342 0 108.856389 2.29373877 0 1.142837953 1.713859747 2.47103545 0 1.311757351 1.889158149 0 1 6.766282274 -8.765154653 24.99999072 0.500000198 1.303555084 0.144410819 0.823356903 205.8808681 1385267.522 0.687361958 0.204215659 1.72E-09 8.765154653 0.803554886 (ac)MNS(ph)STSTMSEEPDALSVVNQLR ddPTM_K562_Paclitaxel_30min_R1 1 MNSSTSTMSEEPDALSVVNQLR 22 0 E9PR92;E5RHK3;E5RJ86;Q9NVT9 E9PR92 ARMC1 Armadillo repeat-containing protein 1 1 MNS(0.249)S(0.249)T(0.249)S(0.249)T(0.005)MSEEPDALSVVNQLR 107.35 4.11E-09 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)MNT(ph)SPGTVGSDPVILATAGYDHTVR ddPTM_K562_Paclitaxel_30min_R1 1 MNTSPGTVGSDPVILATAGYDHTVR 25 0 H3BQ74;I3L2E7;H3BR38;H3BM50;H3BPU5;H3BR25;H3BPT1;H3BN58;H3BSZ4;A0A0A0MR05;Q9BVC4-5;Q9BVC4 H3BQ74 MLST8 Target of rapamycin complex subunit LST8 1 MNT(0.442)S(0.442)PGT(0.11)VGS(0.006)DPVILAT(0.001)AGYDHTVR 68.916 0.00037163 7601000 0 0 0 67.037 0 0 119.91 0 0 0 TRUE FALSE 0 0 0 62.73754687 0 0 142.6622965 0 0 0 0 (ac)MNTAPS(ph)RPSPTR ddPTM_K562_Paclitaxel_30min_R1 1 MNTAPSRPSPTR 12 1 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 MNTAPS(0.902)RPS(0.077)PT(0.021)R 118.61 0.00070377 196370000 0 0 0 57.585 0 0 0 0 0 0 TRUE FALSE 0 0 0 53.89175584 0 0 0 0 0 0 0 (ac)MNTAPSRPS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 6 MNTAPSRPSPTR 12 1 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 MNT(0.001)APS(0.175)RPS(0.655)PT(0.169)R;MNTAPS(0.084)RPS(0.776)PT(0.14)R;MNTAPS(0.001)RPS(0.872)PT(0.127)R;MNTAPS(0.141)RPS(0.668)PT(0.191)R;MNTAPS(0.07)RPS(0.799)PT(0.131)R;MNTAPS(0.024)RPS(0.78)PT(0.196)R 101.43 0.00037586 277391600 1109.86 1007.103 1636.45 1145.465 1334.482 994.54 1053.1 888.39 883.59 1377.26 TRUE FALSE 1125.401464 1117.061911 1223.307958 1072.000002 1516.261041 1170.907705 1252.920227 812.9157243 968.4627675 1096.573656 1.026288985 1.018683884 1.115572995 0.977590512 1.382726124 1.067787557 1.142577355 0.741323412 0.883171652 1 10.098787 -8.249431286 24.7442646 0.859185647 1.106001674 0.432637849 0.120095631 553.3841037 1140324.406 0.056877169 0.03250286 5.63E-09 8.249431286 0.246816028 (ac)MPEANYLLS(ph)VSWGYIK ddPTM_K562_Paclitaxel_30min_R1 2 MPEANYLLSVSWGYIK 16 0 Q07343-4;Q08499-8 Q07343-4 1 MPEANY(0.007)LLS(0.991)VS(0.002)WGYIK;MPEANY(0.022)LLS(0.968)VS(0.01)WGYIK 56.746 0.015365 86294000 1919.85 1779.25 1463.73 1714.78 1587.13 1960.58 2123.76 2061.74 1775.42 2040.81 TRUE FALSE 1946.733823 1973.514532 1094.193258 1604.801686 1803.323976 2308.261335 2526.732373 1886.582318 1945.957024 1624.891802 1.198069817 1.21455135 0.673394534 0.987636029 1.109811727 1.4205631 1.555015768 1.161051041 1.197591755 1 10.66612794 -7.048593292 5.043376716 1.294135977 1.011175934 0.257462447 0.197198124 0.272292256 15.6971217 0.068643578 0.070577068 8.94E-08 7.048593292 -0.282960044 (ac)MPMPTEGTPPPLSGT(ph)PIPVPAYFR ddPTM_K562_Paclitaxel_30min_R1 1 MPMPTEGTPPPLSGTPIPVPAYFR 24 0 Q99640-3;I3L136;A6NHV6 Q99640-3 PKMYT1 Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase 1 MPMPT(0.001)EGT(0.006)PPPLS(0.167)GT(0.821)PIPVPAY(0.005)FR 48.579 0.024138 13876000 1068.6 1315.1 1179 1269.7 1119.9 1066.2 1033.9 1164.1 1203.3 1203.5 TRUE FALSE 1083.563697 1458.687065 881.3468683 1188.267125 1272.44934 1255.2756 1230.077128 1065.202439 1318.882341 958.2260394 1.130801765 1.522278675 0.919769274 1.24006975 1.327921897 1.309999466 1.283702464 1.111640046 1.37637915 1 9.904222208 -11.10839059 5.446835792 0.999996569 1.246560854 0.184042088 0.155992098 6.19E-06 1.01E-06 0.143857689 0.034890129 7.79E-12 11.10839059 0.246564285 (ac)MQT(ph)PVNIPVPVLR ddPTM_K562_Paclitaxel_30min_R1 2 MQTPVNIPVPVLR 13 0 Q9H840 Q9H840 GEMIN7 Gem-associated protein 7 1 MQT(1)PVNIPVPVLR;MQT(1)PVNIPVPVLR 87.641 0.0022549 3863800 405.17 323.55 397.22 183.235 326.19 147.94 338.38 410.52 209.063 409.53 TRUE FALSE 410.8436301 358.8762832 296.9368982 171.4831272 370.6226004 174.1750818 402.5858385 375.6437636 229.1444353 326.0675612 1.259995409 1.100619399 0.910660653 0.525912871 1.136643581 0.534168689 1.234670008 1.152042731 0.7027514 1 8.349027112 -5.581486385 3.064201881 0.899241406 1.241229829 0.199007307 0.235618726 0.41546506 7.486901971 0.061492964 0.238434969 2.62E-06 5.581486385 0.341988422 (ac)MRGT(ph)SCVGGGAES(ph)PGGAGLSEGPR ddPTM_K562_Paclitaxel_30min_R1 1 MRGTSCVGGGAESPGGAGLSEGPR 24 1 C9JVW0 C9JVW0 INAFM1 Putative transmembrane protein INAFM1 2 MRGT(0.575)S(0.456)CVGGGAES(0.968)PGGAGLSEGPR 50.202 0.011795 134850000 0 0 117.16 61.51 172.33 59.067 186.5 143.97 165.66 116.74 TRUE FALSE 0 0 87.58150898 57.56502391 195.8042636 69.54170311 221.8874014 131.7388499 181.5723832 92.94832392 0 0 0.942260229 0.619322883 2.106592731 0.748175978 2.387212507 1.417334324 1.95347668 1 6.538356945 -6.2380168 1.141162636 1.635111869 1.40E-18 0.57054084 0.520398291 0.384054419 0.939130632 0.176281812 0.499511542 5.78E-07 6.2380168 -1.635111869 (ac)MRKET(ph)PPPLVPPAAR ddPTM_K562_Paclitaxel_30min_R1 1 MRKETPPPLVPPAAR 15 2 Q9BQA1;Q9BQA1-2 Q9BQA1 WDR77 Methylosome protein 50 1 MRKET(1)PPPLVPPAAR 63.181 0.018283 0 865.13 663.36 1277.6 963.86 665.4 758.25 799.96 740.11 3209.8 737.65 TRUE FALSE 877.2444892 735.7878881 955.0540788 902.0423337 756.0387453 892.7149911 951.7482339 677.2330359 3518.115632 587.3165251 1.493648572 1.252796161 1.626131801 1.535870855 1.287276474 1.519989568 1.620503073 1.153097192 5.990152637 1 9.197994421 (ac)MS(ph)DPDTPPQMT(ph)FGDK ddPTM_K562_Paclitaxel_30min_R1 1 MSDPDTPPQMTFGDK 15 0 A0A5F9ZHX5 A0A5F9ZHX5 2 MS(1)DPDT(0.001)PPQMT(0.999)FGDK 68.044 0.021641 3918300 1794.6 1580.4 2183.9 2290 1732.1 1416.4 1574.4 2134.1 1073.9 2087.3 TRUE FALSE 1819.729937 1752.953417 1632.547435 2143.12965 1968.041345 1667.578653 1873.134181 1952.794884 1177.052893 1661.907114 1.094964888 1.05478423 0.982333742 1.289560428 1.184206583 1.003412669 1.127099201 1.175032508 0.70825432 1 10.69862404 -8.749815624 24.99969217 0.854127119 1.112519337 0.482829601 0.107543022 160.148446 344442.7777 0.073477321 0.027259164 1.78E-09 8.749815624 0.258392218 (ac)MS(ph)GDEMIFDPTMSK ddPTM_K562_Paclitaxel_30min_R1 1 MSGDEMIFDPTMSK 14 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 MS(1)GDEMIFDPTMSK 97.734 3.94E-06 3802900 1948.6 2168.1 3090.3 2205.3 2294 1681.7 1749.6 2442.5 2737.2 2486.4 TRUE FALSE 1975.886412 2404.82049 2310.115545 2063.861929 2606.481638 1979.925883 2081.577466 2234.994379 3000.12029 1979.670315 0.998088619 1.214758069 1.166919323 1.042528098 1.316624095 1.000129096 1.05147683 1.128973023 1.515464604 1 10.95104448 -8.567711947 24.99904124 1.279228148 1.117605875 0.124539551 0.149448831 228.2734739 127281.6468 0.093642852 0.035393716 2.71E-09 8.567711947 -0.161622273 (ac)MS(ph)PTPPLFSLPEAR ddPTM_K562_Paclitaxel_30min_R1 5 MSPTPPLFSLPEAR 14 0 J3KRD7;J3QQZ3;J3KT14;A0A087WWS1;Q96FV9-2;Q96FV9 J3KRD7 THOC1 THO complex subunit 1 1 MS(0.995)PT(0.005)PPLFSLPEAR;MS(0.994)PT(0.006)PPLFSLPEAR;MS(0.969)PT(0.031)PPLFSLPEAR;MS(0.951)PT(0.049)PPLFSLPEAR;MS(0.999)PT(0.001)PPLFSLPEAR 137.17 8.83E-41 57930600 101.12 278.58 397.43 129.57 262.11 127.42 0 134.98 497.668 353.17 TRUE FALSE 102.535992 308.9963065 297.0938811 121.2599601 297.8138196 150.0161479 0 123.5126065 545.471235 281.1937601 0.364645332 1.098873269 1.056545071 0.431232756 1.059105364 0.533497428 0 0.439243767 1.939841178 1 8.13542077 -8.749674175 24.99999746 1.469920721 0.637622705 0.420218266 0.397670714 191.6073706 407154.046 0.281433488 0.104475618 1.78E-09 8.749674175 -0.832298016 (ac)MS(ph)SKVY(ph)STGS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 MSSKVYSTGSR 11 1 Q7Z7H3 Q7Z7H3 CATIP Ciliogenesis-associated TTC17-interacting protein 3 MS(0.949)S(0.104)KVY(0.924)S(0.128)T(0.11)GS(0.785)R 43.03 0.029357 14511000 206.14 0 201.44 216.08 43.333 198.37 120.91 280.9 202.33 209.37 TRUE FALSE 209.026596 0 150.5839806 202.2215959 49.23568823 233.5481342 143.8520413 257.0357917 221.7647005 166.7002791 1.253906695 0 0.903321707 1.213084927 0.295354564 1.401006258 0.862938215 1.541903787 1.330319912 1 7.381112709 -7.28198275 24.98565972 1.238334174 0.728522756 0.277832304 0.398066218 1077.419515 1310395.691 0.136671899 0.120667666 5.22E-08 7.28198275 -0.509811418 (ac)MSDS(ph)KK ddPTM_K562_Paclitaxel_30min_R1 2 MSDSKK 6 1 K7EJW3 K7EJW3 BRCA1 1 MSDS(1)KK;MSDS(1)KK 61.006 0.017711 18495500 0 0 0 0 0 0 58.565 0 0 0 TRUE FALSE 0 0 0 0 0 0 69.67740302 0 0 0 0 (ac)MSDS(ph)VILRS(ph)IKK ddPTM_K562_Paclitaxel_30min_R1 1 MSDSVILRSIKK 12 2 O95342 O95342 ABCB11 Bile salt export pump 2 MS(0.428)DS(0.572)VILRS(1)IKK 42.947 0.028919 37322000 120.87 0 113.42 0 115.6 118.65 0 152.68 0 116.1 TRUE FALSE 122.5625529 0 84.78571824 0 131.3466771 139.6909116 0 139.708881 0 92.43875627 1.325878429 0 0.917209639 0 1.42090485 1.511172556 0 1.511366949 0 1 6.530425944 -6.765473267 24.98666374 0.917643518 0.546176755 0.06699603 0.631759219 288.5942558 1787607.397 0.184290757 0.21665606 1.72E-07 6.765473267 -0.371466762 (ac)MSPT(ph)PPLFSLPEAR ddPTM_K562_Paclitaxel_30min_R1 1 MSPTPPLFSLPEAR 14 0 J3KRD7;J3QQZ3;J3KT14;A0A087WWS1;Q96FV9-2;Q96FV9 J3KRD7 THOC1 THO complex subunit 1 1 MS(0.335)PT(0.665)PPLFSLPEAR 91.313 0.0066542 3569000 0 0 0 0 0 0 0 123.26 0 81.602 TRUE FALSE 0 0 0 0 0 0 0 112.7882936 0 64.97146761 0 0 0 0 0 0 0 1.735966537 0 1 6.021734389 -8.199241495 22.82769633 0.900987189 4.03E-16 0.534836522 0.389714258 60.8805836 22344.03042 0.164743517 0.095114681 6.32E-09 8.199241495 -0.900987189 (ac)MSQTMT(ph)QAGVSFR ddPTM_K562_Paclitaxel_30min_R1 1 MSQTMTQAGVSFR 13 0 A8MUP8 A8MUP8 RARA 1 MSQT(0.037)MT(0.963)QAGVSFR 108.68 0.026736 3563900 158.91 123.52 126.08 144.71 0 0 112.42 0 0 0 TRUE FALSE 161.1352303 137.0063313 94.24954466 135.4289483 0 0 133.7511081 0 0 0 0 (ac)MSSLSEYAFRMSR ddPTM_K562_Paclitaxel_30min_R1 1 MSSLSEYAFRMSR 13 1 Q9Y291 Q9Y291 MRPS33 "28S ribosomal protein S33, mitochondrial" 0 59.155 0.0022728 10333000 65.669 0 89.757 182.83 51.782 173.91 51.536 53.628 115.25 56.2 FALSE TRUE 66.58856861 0 67.09673525 171.1041021 58.83558508 204.7504967 61.31468696 49.07196666 126.3202775 44.74640915 1.488132118 0 1.499488708 3.823862191 1.314867186 4.575797267 1.370270556 1.09666826 2.823026023 1 5.483700007 -6.001775258 24.93397144 2.334401113 0.745485194 0.217776625 1.177708965 92.26781464 1296009.514 0.299760804 0.609475669 9.96E-07 6.001775258 -1.58891592 (ac)MSSS(ph)WPGTS(ph)PRLS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 MSSSWPGTSPRLSR 14 1 Q18PE1-2 Q18PE1-2 3 MS(0.116)S(0.375)S(0.487)WPGT(0.069)S(0.979)PRLS(0.973)R;MS(0.03)S(0.408)S(0.537)WPGT(0.058)S(0.988)PRLS(0.978)R 64.407 0.012521 530220000 0 0 0 0 0 0 0 66.003 0 0 TRUE FALSE 0 0 0 0 0 0 0 60.39563317 0 0 0 (ac)MVDYSVWDHIEVS(ph)DDEDETHPNIDTASLFR ddPTM_K562_Paclitaxel_30min_R1 3 MVDYSVWDHIEVSDDEDETHPNIDTASLFR 30 0 K7EJ06;K7EQA9;K7EKQ2;Q16543 K7EJ06 CDC37 "Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed" 1 MVDY(0.128)S(0.14)VWDHIEVS(0.593)DDEDET(0.14)HPNIDTASLFR;MVDY(0.297)S(0.331)VWDHIEVS(0.37)DDEDET(0.002)HPNIDTASLFR;MVDY(0.02)S(0.022)VWDHIEVS(0.957)DDEDET(0.001)HPNIDTASLFR 51.978 0.00020606 155528000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)NSMDRHIQQT(ph)NDR ddPTM_K562_Paclitaxel_30min_R1 1 NSMDRHIQQTNDR 13 1 A0A087WYE6;Q9ULJ6 A0A087WYE6 ZMIZ1 Zinc finger MIZ domain-containing protein 1 1 NSMDRHIQQT(1)NDR 51.726 0.028525 3339100 0 0 121.43 0 0 0 58.363 138.82 55.779 62.606 TRUE FALSE 0 0 90.77349467 0 0 0 69.43707457 127.0263745 61.13682218 49.84686283 0 0 1.821047294 0 0 0 1.393007917 2.548332378 1.226492876 1 5.639430805 -7.875329646 5.274165296 1.718574933 0.334883962 0.461928423 0.650853347 0.182247738 7.67655815 0.282530641 0.188772546 1.33E-08 7.875329646 -1.383690971 (ac)PEGAQGLSLS(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 PEGAQGLSLSK 11 0 Q9H7P9-3;Q9H7P9;E7ESZ3;Q9H7P9-2;M0R391;C9J7S4;C9JVL3 Q9H7P9-3 PLEKHG2 Pleckstrin homology domain-containing family G member 2 1 PEGAQGLSLS(1)K 80.438 0.022954 352300 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)S(ph)AADEVDGLGVARPHYGSVLDNER ddPTM_K562_Paclitaxel_30min_R1 1 SAADEVDGLGVARPHYGSVLDNER 24 1 H0YLE8;A0A0J9YXZ5;P46940 H0YLE8 IQGAP1 Ras GTPase-activating-like protein IQGAP1 1 S(1)AADEVDGLGVARPHYGSVLDNER 72.383 0.0013095 16535000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)S(ph)ASSLLEQRPK ddPTM_K562_Paclitaxel_30min_R1 2 SASSLLEQRPK 11 1 Q9Y5A9;S4R3J8;S4R3V3 Q9Y5A9 YTHDF2 YTH domain-containing family protein 2 1 S(0.766)AS(0.225)S(0.009)LLEQRPK;S(0.763)AS(0.221)S(0.017)LLEQRPK 78.264 0.00088337 187887000 2365.9 2174.6 3206.3 2422.8 2113.2 2122.9 2477.7 2519.3 2922 3390.1 TRUE FALSE 2399.029899 2412.030182 2396.82991 2267.412452 2401.053617 2499.366508 2947.830641 2305.26974 3202.671156 2699.195759 0.888794335 0.893610689 0.887979281 0.840032608 0.889544083 0.925967114 1.092114431 0.854058003 1.18652793 1 11.3983139 -7.573916706 5.746518524 1.020823481 0.881437739 0.452089849 0.079300406 0.185908793 13.61558492 0.028501936 0.022086546 2.67E-08 7.573916706 -0.139385742 (ac)S(ph)DAAVDTSSEITTK ddPTM_K562_Paclitaxel_30min_R1 4 SDAAVDTSSEITTK 14 0 B8ZZQ6;P06454-2;P06454 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 1 S(1)DAAVDTSSEITTK;S(1)DAAVDTSSEITTK;S(1)DAAVDTSSEITTK;S(1)DAAVDTSSEITTK 120.86 1.73E-18 260972000 16044.5 13941.5 22017.6 17232.2 13962.6 12657.6 12926.5 16700.1 16746.1 17980.6 TRUE FALSE 16269.1725 15463.68012 16458.98457 16127.00382 15864.54251 14902.24764 15379.23589 15281.32227 18354.63773 14316.14385 1.136421418 1.080156799 1.149680022 1.126490764 1.108157523 1.04094006 1.074258268 1.067418882 1.282093692 1 13.80535532 -7.001720412 23.39362481 1.093605974 1.121420773 0.038205838 0.071327077 132.9901178 1808455.396 0.022031806 0.024564752 9.96E-08 7.001720412 0.027814799 (ac)S(ph)DDDSRASTSSSSSSSSNQQTEKETNTPK ddPTM_K562_Paclitaxel_30min_R1 2 SDDDSRASTSSSSSSSSNQQTEKETNTPK 29 2 C9J2P0;P51965-3;P51965 C9J2P0 UBE2E1 Ubiquitin-conjugating enzyme E2 E1 1 S(0.463)DDDS(0.385)RAS(0.1)T(0.032)S(0.011)S(0.004)S(0.001)S(0.001)S(0.001)S(0.001)SSNQQTEKETNTPK;S(0.352)DDDS(0.301)RAS(0.08)T(0.08)S(0.022)S(0.022)S(0.034)S(0.034)S(0.034)S(0.034)S(0.007)S(0.001)NQQTEKETNTPK 72.654 2.16E-08 84983000 4426.8 3407.8 7551.9 4655 2879.4 2620 2659.8 4730 4986 5210.9 TRUE FALSE 4488.788858 3779.875128 5645.329444 4356.449135 3271.623029 3084.620213 3164.483165 4328.156976 5464.927578 4148.91572 1.081918545 0.911051316 1.360675855 1.050021121 0.788548925 0.743476229 0.762725343 1.043201952 1.317194165 1 12.01851864 -5.206834059 20.47989905 0.989979219 1.081923854 0.014235064 0.202542725 31386.86763 11768259.92 0.054899335 37.84121887 6.21E-06 5.206834059 0.091944635 (ac)S(ph)DFDEFER ddPTM_K562_Paclitaxel_30min_R1 1 SDFDEFER 8 0 P26368;P26368-2 P26368 U2AF2 Splicing factor U2AF 65 kDa subunit 1 S(1)DFDEFER 110.31 2.41E-05 1992600000 0 0 64.489 0 0 0 0 0 117 105.68 TRUE FALSE 0 0 48.20795436 0 0 0 0 0 128.2383728 84.14235799 0 0 0.572933247 0 0 0 0 0 1.524064405 1 6.394760343 -8.75595428 25 1.2620324 0.076390992 0.84221995 0.206088769 42.92756709 195662.2418 0.14801328 0.052363385 1.75E-09 8.75595428 -1.185641408 (ac)S(ph)DGDYDYLIK ddPTM_K562_Paclitaxel_30min_R1 1 SDGDYDYLIK 10 0 H3BU81;H3BUD9;H3BS49;H3BVH7;H3BN55;P51159-2;P51159 H3BU81 RAB27A Ras-related protein Rab-27A 1 S(0.994)DGDY(0.005)DYLIK 59.8 0.03016 0 900.33 605.14 957.86 657.59 558.24 598.7 528.37 593.57 524.32 776.26 TRUE FALSE 912.9373978 671.2112317 716.0363963 615.4151207 634.2817391 704.8710388 628.6254492 543.1425236 574.6832787 618.0577859 1.477106864 1.08600077 1.158526618 0.995724242 1.026249897 1.140461386 1.01709818 0.878789226 0.929821275 1 9.27159792 -2 0.707875184 0.993137557 61.77583811 0.776045426 0.074844327 149.857932 0.768928801 0.031148888 14435.32192 0.01 2 60.78270055 (ac)S(ph)DNDDIEVES(ph)DEEQPR ddPTM_K562_Paclitaxel_30min_R1 2 SDNDDIEVESDEEQPR 16 0 G3V5L1;P61244-6;P61244-5;P61244-3;P61244-4;P61244 G3V5L1 MAX Protein max 2 S(1)DNDDIEVES(1)DEEQPR;S(1)DNDDIEVES(1)DEEQPR 187.78 5.17E-94 103794000 1630.89 1647.59 3049.59 1978.8 1563.53 1587.42 1215.04 1636.79 2614.96 2229.77 TRUE FALSE 1653.727492 1827.479448 2279.683288 1851.888625 1776.509257 1868.926649 1445.587497 1497.734473 2866.138592 1775.34165 0.931498166 1.029367755 1.284081454 1.043116757 1.00065768 1.052713797 0.814258764 0.843631688 1.614415226 1 10.79388097 -8.743340603 24.99991612 1.307208103 1.007405828 0.307618588 0.184132693 256.2796541 354003.0084 0.123615613 0.046517984 1.81E-09 8.743340603 -0.299802275 (ac)S(ph)DNDDIEVESDADKR ddPTM_K562_Paclitaxel_30min_R1 2 SDNDDIEVESDADKR 15 1 A0A494C130;Q6V3B1;G3V563;G3V2R5;P61244-2 A0A494C130 MAX Protein max 1 S(1)DNDDIEVESDADKR;S(1)DNDDIEVESDADKR 84.759 0.0020521 177049000 3736.65 3282.02 5960.9 4489.7 4374.71 3839.96 3098.01 4402.83 3612.94 5060.6 TRUE FALSE 3788.974629 3640.362043 4455.997072 4201.750737 4970.619566 4520.92299 3685.841225 4028.78211 3959.97903 4029.246942 0.940367935 0.903484471 1.105913124 1.042812912 1.23363488 1.122026784 0.914771737 0.999884635 0.98280872 1 11.97629451 -11.25373349 14.30592467 0.999994776 1.031166004 0.005533599 0.098175123 0 0 0.103873527 0.025193031 5.58E-12 11.25373349 0.031171228 (ac)S(ph)DNGELEDKPPAPPVR ddPTM_K562_Paclitaxel_30min_R1 2 SDNGELEDKPPAPPVR 16 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 S(1)DNGELEDKPPAPPVR;S(1)DNGELEDKPPAPPVR 85.813 1.87E-07 94674000 4953.9 4575.3 7697.8 5618.1 4880 4313.3 4139.5 5731.5 5469.4 5519.5 TRUE FALSE 5023.269884 5074.846727 5754.395185 5257.780212 5544.738619 5078.203193 4924.948515 5244.5733 5994.760308 4394.62287 1.143049138 1.15478549 1.309417294 1.196412153 1.261709772 1.155549257 1.120676031 1.19340691 1.364112572 1 12.10152365 -7.292558316 24.52976557 1.175957331 1.214263167 0.0517709 0.095065009 2313.42241 1823567.244 0.033353279 0.029418576 5.10E-08 7.292558316 0.038305836 (ac)S(ph)DQALEALSASLGTR ddPTM_K562_Paclitaxel_30min_R1 2 SDQALEALSASLGTR 15 0 D6RAA8;D6RC54;E7EQ12 D6RAA8 CAST 1 S(1)DQALEALSASLGTR;S(1)DQALEALSASLGTR 87.667 1.26E-05 5368600 299.73 174.26 313.67 343.68 139.02 132.94 167.78 124.881 69.32 265.63 TRUE FALSE 303.9271447 193.2862961 234.4801291 321.6379031 157.9568776 156.5150424 199.6153791 114.2715796 75.97849573 211.4944602 1.437045417 0.913907135 1.108682132 1.52078642 0.746860591 0.740043225 0.943832661 0.540305309 0.359245796 1 7.724476064 -6.858035166 8.314229117 0.707495565 1.210772056 0.548022477 0.231978575 0.2084552 15.93514731 0.073422871 0.083410744 1.39E-07 6.858035166 0.503276492 (ac)S(ph)DQDHSMDEMTAVVK ddPTM_K562_Paclitaxel_30min_R1 3 SDQDHSMDEMTAVVK 15 0 P08047;H3BUU5;P08047-3 P08047 SP1 Transcription factor Sp1 1 S(0.993)DQDHS(0.007)MDEMTAVVK;S(0.962)DQDHS(0.038)MDEMTAVVK;S(0.997)DQDHS(0.003)MDEMTAVVK 106.01 2.75E-89 97205000 9603.1 9265.8 13233.3 10167.1 8619.4 8314.7 8428 9949.7 8238.3 11325.8 TRUE FALSE 9737.573028 10277.47138 9892.389748 9515.027712 9793.508208 9789.195301 10027.169 9104.410881 9029.625525 9017.595743 1.07984138 1.139713031 1.097009672 1.055162372 1.086044272 1.085565996 1.111955924 1.009627304 1.001334034 1 13.13852712 -8.272354865 21.95077085 1.004110416 1.093437432 0.797366454 0.020781285 65.97682939 132674.1786 0.011887287 0.005826565 5.34E-09 8.272354865 0.089327016 (ac)S(ph)DQEAKPSTEDLGDKK ddPTM_K562_Paclitaxel_30min_R1 1 SDQEAKPSTEDLGDKK 16 2 B8ZZN6;P63165;B8ZZJ0;B9A032 B8ZZN6 SUMO1 Small ubiquitin-related modifier 1 1 S(0.995)DQEAKPS(0.004)TEDLGDKK 56.225 0.011471 0 933.04 520.31 2016.7 962.27 508.55 377.08 422.06 1408.2 549.61 1288.8 TRUE FALSE 946.1054387 577.1192054 1507.559143 900.5543092 577.8231198 443.9498435 502.1436817 1288.56462 602.4024962 1026.141853 0.922002583 0.562416594 1.469152768 0.877611908 0.563102575 0.432639837 0.489351136 1.25573732 0.587055771 1 10.00301447 -4.923821757 19.30321152 0.80244758 4.458263605 0.011314107 0.330261372 1931.115654 505755.3848 0.082175154 10183.43357 1.19E-05 4.923821757 3.655816025 (ac)S(ph)DQQLDCALDLMR ddPTM_K562_Paclitaxel_30min_R1 2 SDQQLDCALDLMR 13 0 B1AK87;B1AK85;P47756-2;P47756;A0A6I8PIN8 B1AK87 CAPZB F-actin-capping protein subunit beta 1 S(1)DQQLDCALDLMR;S(1)DQQLDCALDLMR 137.98 0.00014227 18382600 0 0 68.181 62.486 0 0 63.393 173.644 0 126.28 TRUE FALSE 0 0 50.9678633 58.47842764 0 0 75.42149082 158.8918583 0 100.5440667 0 0 0.506920647 0.581619876 0 0 0.750133681 1.580320586 0 1 6.651684137 -7.869938924 5.741134429 0.901199329 0.199932504 0.375428997 0.410849529 0.21820819 10.21951213 0.171054287 0.114658788 1.35E-08 7.869938924 -0.701266825 (ac)S(ph)DS(ph)GEQNYGERESRS(ph)ASR ddPTM_K562_Paclitaxel_30min_R1 2 SDSGEQNYGERESRSASR 18 2 P62995 P62995 TRA2B Transformer-2 protein homolog beta 3 S(0.999)DS(0.999)GEQNY(0.002)GERES(0.001)RS(0.643)AS(0.357)R;S(0.983)DS(0.987)GEQNY(0.032)GERES(0.011)RS(0.679)AS(0.309)R 111.93 0.00056567 34664000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)S(ph)DSGEQNYGER ddPTM_K562_Paclitaxel_30min_R1 2 SDSGEQNYGER 11 0 P62995;P62995-2 P62995 TRA2B Transformer-2 protein homolog beta 1 S(0.998)DS(0.002)GEQNYGER;S(0.989)DS(0.011)GEQNYGER 120.99 2.26E-14 9677600 64.711 107.52 0 0 0 0 0 0 0 0 TRUE FALSE 65.61715365 119.2593972 0 0 0 0 0 0 0 0 0 (ac)S(ph)DSGEQNYGERES(ph)R ddPTM_K562_Paclitaxel_30min_R1 4 SDSGEQNYGERESR 14 1 P62995 P62995 TRA2B Transformer-2 protein homolog beta 2 S(0.941)DS(0.059)GEQNYGERES(1)R;S(0.899)DS(0.101)GEQNYGERES(1)R;S(0.938)DS(0.062)GEQNYGERES(1)R;S(0.763)DS(0.237)GEQNYGERES(1)R 130.21 5.00E-212 0 0 136.58 168.23 144.88 129.13 0 135.11 221.4 150.73 200.86 TRUE FALSE 0 151.4922663 125.7582559 135.5880453 146.7196922 0 160.7464172 202.5906881 165.20829 159.9246217 0 0.947272938 0.786359564 0.847824705 0.917430291 0 1.005138642 1.266788602 1.033038491 1 7.321248261 -7.978772379 24.99895299 1.117141169 0.625028629 0.346963199 0.330078344 272.8506811 321325.2217 0.137238844 0.0925177 1.05E-08 7.978772379 -0.49211254 (ac)S(ph)DVEENNFEGRES(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 SDVEENNFEGRESR 14 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 2 S(1)DVEENNFEGRES(1)R;S(1)DVEENNFEGRES(1)R 116.61 2.20E-06 119064000 186.51 216.812 221.155 428.63 54.876 232.361 0 232.36 132.09 268.12 TRUE FALSE 189.1217154 240.4842674 165.321685 401.1395903 62.35104026 273.5669608 0 212.6195677 144.7778347 213.4769968 0.885911448 1.126511385 0.774423884 1.879076417 0.292073812 1.28148215 0 0.995983506 0.678189392 1 7.737936811 -6.796848177 24.99996791 0.701032977 1.135625375 0.206931437 0.437966224 288.747258 203865.0692 0.128371084 0.145564482 1.60E-07 6.796848177 0.434592398 (ac)S(ph)DYENDDECWSVLEGFR ddPTM_K562_Paclitaxel_30min_R1 1 SDYENDDECWSVLEGFR 17 0 Q9H257;Q9H257-2;Q9H257-3 Q9H257 CARD9 Caspase recruitment domain-containing protein 9 1 S(0.919)DY(0.081)ENDDECWSVLEGFR 155.02 5.19E-14 9906400 156.89 248.72 141.7 222.39 132.05 64.354 69.398 149.68 63.175 210.52 TRUE FALSE 159.086944 275.8760907 105.9260825 208.1269008 150.0374456 75.76627833 82.56590822 136.9637497 69.24324102 167.6159084 0.949116021 1.645882502 0.631957214 1.241689424 0.895126525 0.452023194 0.492589928 0.817128583 0.413106618 1 7.389015272 -7.020665325 4.708339777 0.616950915 1.117807625 0.382922951 0.288272412 0.19568824 11.22721102 0.090704563 0.095881634 9.54E-08 7.020665325 0.50085671 (ac)S(ph)EGESQTVLSSGSDPK ddPTM_K562_Paclitaxel_30min_R1 1 SEGESQTVLSSGSDPK 16 0 F8W6G1;Q9UHY1;C9JDW7;C9JHZ6 F8W6G1 NRBP1 Nuclear receptor-binding protein 1 S(0.986)EGES(0.014)QTVLSSGSDPK 71.268 0.00027233 24626000 5186.5 4747.8 7693.7 6444.3 5083.9 4661 4548.8 6059.6 4726.1 7007.2 TRUE FALSE 5259.127002 5266.18086 5751.330281 6030.991442 5776.413251 5487.562906 5411.911054 5544.799157 5180.063022 5579.128794 0.942643053 0.943907383 1.030865301 1.080991614 1.035361158 0.98358778 0.970027984 0.993846775 0.928471669 1 12.44582414 -10.30646056 12.55664603 1.000004267 0.993167534 0 0.04550495 0 0 0.048608463 0.011789284 4.94E-11 10.30646056 -0.006836734 (ac)S(ph)EKSVEAAAELSAK ddPTM_K562_Paclitaxel_30min_R1 1 SEKSVEAAAELSAK 14 1 F5H7R9;F5GXR3;P20962 F5H7R9 PTMS Parathymosin 1 S(0.807)EKS(0.193)VEAAAELSAK 57.164 0.0017699 8206200 679.2 645.26 1151.1 650.46 487.1 496.71 397.71 738.63 724.76 776.52 TRUE FALSE 688.7108955 715.7116689 860.4905684 608.742407 553.4512667 584.7945443 473.1733963 675.8787711 794.3764363 618.2647978 1.113941628 1.157613488 1.391783216 0.9845982 0.895168654 0.94586421 0.765324822 1.093186566 1.284848238 1 9.272081055 -6.301557001 22.09344478 0.983604599 1.214762747 0.340551496 0.143067901 150.0244043 82620.29794 0.042787288 0.0634665 4.99E-07 6.301557001 0.231158149 (ac)S(ph)ESGHSQPGLYGIER ddPTM_K562_Paclitaxel_30min_R1 1 SESGHSQPGLYGIER 15 0 M0QZH1;M0QX70;M0QYR7;M0R2N0;M0QZC7;Q9H0W8-2;Q9H0W8 M0QZH1 SMG9 Protein SMG9 1 S(0.847)ES(0.124)GHS(0.029)QPGLYGIER 75.566 0.0014173 44788000 279.27 224.35 457.99 292.04 371.98 210.19 150.73 401.94 417.05 475 TRUE FALSE 283.1806416 248.8452917 342.3647602 273.3098615 422.6499737 247.4642453 179.3302306 367.7926882 457.1095159 378.1947393 0.748769383 0.657981896 0.905260504 0.722669654 1.117545883 0.654330216 0.474174313 0.972495516 1.208661751 1 8.562985485 -8.513699644 23.72573239 1.099746984 0.762380467 0.429637396 0.166062633 218.8134588 565595.116 0.10388834 0.043879854 3.06E-09 8.513699644 -0.337366517 (ac)S(ph)ESSSKSSQPLASKQEK ddPTM_K562_Paclitaxel_30min_R1 1 SESSSKSSQPLASKQEK 17 2 P17096;P17096-2;P17096-3;A0A669KAX1 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 S(0.542)ES(0.127)S(0.105)S(0.105)KS(0.06)S(0.06)QPLASKQEK 53.008 0.030936 74000000 2215.5 1358.1 4455.7 2183.3 1358.4 1135.5 1168.1 1652.9 1657.9 3036.2 TRUE FALSE 2246.523835 1506.381951 3330.803428 2043.27291 1543.437078 1336.864982 1389.740877 1512.475828 1817.148703 2417.420773 0.929306085 0.623136016 1.377833542 0.84522849 0.638464389 0.553012945 0.574885801 0.625656834 0.751689041 1 11.23925289 -6.605672519 5.004262851 0.661398737 0.966647468 0.269041666 0.208334852 0.251445102 11.01057049 0.061505823 0.080394247 2.48E-07 6.605672519 0.305248731 (ac)S(ph)ETAPAAPAAAPPAEK ddPTM_K562_Paclitaxel_30min_R1 3 SETAPAAPAAAPPAEK 16 0 P16403 P16403 HIST1H1C Histone H1.2 1 S(0.5)ET(0.5)APAAPAAAPPAEK;S(0.973)ET(0.027)APAAPAAAPPAEK;S(0.5)ET(0.5)APAAPAAAPPAEK 68.809 3.32E-08 164331000 12688.1 11693.73 18186.1 13407.77 11867.21 10042.43 10690.43 14913.8 8397.25 15800.77 TRUE FALSE 12865.77255 12970.49099 13594.79413 12547.85564 13483.72492 11823.31396 12718.88328 13646.7796 9203.843382 12580.5644 1.022670537 1.030994364 1.080618778 0.997400056 1.071790143 0.939807912 1.010994649 1.084750983 0.731592247 1 13.61890903 -8.743340054 24.99999972 0.865795971 1.028289613 0.448423019 0.072774405 174.1624707 240566.8316 0.045525427 0.01713248 1.81E-09 8.743340054 0.162493642 (ac)S(ph)ETAPAAPAAAPPAEKAPVK ddPTM_K562_Paclitaxel_30min_R1 4 SETAPAAPAAAPPAEKAPVK 20 1 P16403 P16403 HIST1H1C Histone H1.2 1 S(0.5)ET(0.5)APAAPAAAPPAEKAPVK;S(0.5)ET(0.5)APAAPAAAPPAEKAPVK;S(0.5)ET(0.5)APAAPAAAPPAEKAPVK;S(0.5)ET(0.5)APAAPAAAPPAEKAPVK 81.185 1.48E-13 247172000 9263.6 7699.3 16925.9 9738.8 7801.3 7035 6730.4 9957.9 11114.3 12177.6 TRUE FALSE 9393.318981 8539.935611 12652.74721 9114.196957 8863.969137 8282.558474 8007.458265 9111.91424 12181.87818 9695.798436 0.968803038 0.880787247 1.304972179 0.940015102 0.914207241 0.854242023 0.825868887 0.939779669 1.256407944 1 13.24314399 -8.734179144 24.99311367 1.128204065 0.953537244 0.204327279 0.1378341 307.3050884 281749.1116 0.096809946 0.036570748 1.84E-09 8.734179144 -0.174666821 (ac)S(ph)ETAPAAPAAAPPAEKAPVKK ddPTM_K562_Paclitaxel_30min_R1 1 SETAPAAPAAAPPAEKAPVKK 21 2 P16403 P16403 HIST1H1C Histone H1.2 1 S(0.5)ET(0.5)APAAPAAAPPAEKAPVKK 42.118 0.00042007 12900000 5906.5 4426.9 13039 6724.3 5029.4 3457.6 3540.5 6714.8 8062.9 8284.4 TRUE FALSE 5989.209223 4910.243913 9747.143186 6293.033495 5714.489428 4070.756813 4212.291392 6144.335828 8837.377571 6596.034733 0.908001468 0.744423599 1.477727693 0.954063123 0.866352234 0.617152119 0.638609644 0.931519629 1.339801552 1 12.68738328 -6.520583014 24.38264085 0.872181867 1.047222662 0.05413519 0.255843927 180.8979516 1921312.171 0.079331058 0.104260567 3.02E-07 6.520583014 0.175040794 (ac)S(ph)ETAPAAPAAPAPAEKTPVK ddPTM_K562_Paclitaxel_30min_R1 6 SETAPAAPAAPAPAEKTPVK 20 1 P10412 P10412 HIST1H1E Histone H1.4 1 S(0.5)ET(0.5)APAAPAAPAPAEKTPVK;S(0.35)ET(0.35)APAAPAAPAPAEKT(0.301)PVK;S(0.5)ET(0.5)APAAPAAPAPAEKTPVK;S(0.489)ET(0.489)APAAPAAPAPAEKT(0.022)PVK;S(0.5)ET(0.5)APAAPAAPAPAEKTPVK;S(0.5)ET(0.5)APAAPAAPAPAEKTPVK 82.483 3.29E-12 595257000 15311.4 12150.7 27151.7 15810.6 12031.6 10246.1 9315.06 14907.8 15429.04 18562.6 TRUE FALSE 15525.80684 13477.35452 20296.91753 14796.57888 13670.50762 12063.10197 11082.54401 13641.28934 16911.06823 14779.53193 1.050493812 0.91189319 1.373312607 1.001153416 0.924962149 0.816203248 0.749857577 0.922985207 1.144222179 1 13.85131296 -6.518214 17.86487624 0.913173363 1.107787608 0.244856276 0.144704404 6.809589586 26078.20694 0.043749301 0.0586712 3.03E-07 6.518214 0.194614245 (ac)S(ph)ETAPAETATPAPVEK ddPTM_K562_Paclitaxel_30min_R1 2 SETAPAETATPAPVEK 16 0 P16401 P16401 HIST1H1B Histone H1.5 1 S(0.751)ET(0.249)APAETATPAPVEK;S(0.999)ET(0.001)APAETATPAPVEK 147.51 3.05E-09 26507000 10334.3 9802 14660.2 11415.1 10388.7 8812.1 8945 11688.7 9442.6 12336.7 TRUE FALSE 10479.01208 10872.21551 10959.05119 10682.98658 11803.81682 10374.80221 10642.26705 10695.67198 10349.60392 9822.473768 1.066840424 1.106871422 1.115711933 1.087606527 1.201715281 1.056231093 1.08346098 1.088897993 1.053665723 1 13.26187069 -9.019592634 0.778180556 1.000067448 1.109169537 0.438515911 0.03702938 0.672798931 0.928630651 0.035985399 0.013504106 9.56E-10 9.019592634 0.109102089 (ac)S(ph)ETAPAETATPAPVEKSPAK ddPTM_K562_Paclitaxel_30min_R1 4 SETAPAETATPAPVEKSPAK 20 1 P16401 P16401 HIST1H1B Histone H1.5 1 S(0.804)ET(0.068)APAET(0.048)AT(0.048)PAPVEKS(0.033)PAK;S(0.855)ET(0.145)APAETATPAPVEKSPAK;S(0.963)ET(0.026)APAET(0.001)ATPAPVEKS(0.01)PAK;S(0.562)ET(0.16)APAET(0.029)AT(0.245)PAPVEKS(0.005)PAK 98.507 1.25E-06 651115000 12836 10443.6 27463.4 14467.5 10638.8 9304.4 8874.1 14241.4 9161 18523.4 TRUE FALSE 13015.7436 11583.86757 20529.92501 13539.6193 12087.98468 10954.4047 10557.91415 13031.50418 10040.95498 14748.32091 0.882523758 0.785436365 1.392017785 0.918044799 0.819617687 0.742756058 0.715872282 0.883592394 0.680820213 1 13.84826309 -6.640091318 4.289104096 0.793831684 1.018297442 0.236209456 0.1694701 0.302025551 9.816949237 0.051477621 0.067229019 2.29E-07 6.640091318 0.224465758 (ac)S(ph)ETAPLAPTIPAPAEK ddPTM_K562_Paclitaxel_30min_R1 1 SETAPLAPTIPAPAEK 16 0 P16402 P16402 HIST1H1D Histone H1.3 1 S(0.98)ET(0.02)APLAPTIPAPAEK 94.122 1.89E-07 7827200 3354.5 2711.3 4643.8 3631 2816.2 2687 2584.9 3987.5 2758.3 4117.3 TRUE FALSE 3401.47335 3007.328903 3471.415256 3398.123912 3199.814119 3163.501723 3075.371281 3648.736986 3023.247039 3278.192 1.037606507 0.917374243 1.058942019 1.036584773 0.976091125 0.965014167 0.938130311 1.113033338 0.92223001 1 11.67868464 (ac)S(ph)FEGGDGAGPAMLATGTAR ddPTM_K562_Paclitaxel_30min_R1 2 SFEGGDGAGPAMLATGTAR 19 0 Q96B36-3 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 1 S(1)FEGGDGAGPAMLATGTAR;S(1)FEGGDGAGPAMLATGTAR 186.75 1.00E-216 7426700 408.284 257.1 701.26 436.59 294.97 218.26 305.24 331.61 390.58 484.36 TRUE FALSE 414.0012357 285.1710475 524.2182399 408.5890715 335.1499079 256.9653465 363.1576965 303.4376607 428.0969542 385.6471661 1.073523345 0.739461022 1.359320866 1.059489366 0.869058397 0.666322403 0.94168382 0.78682715 1.11007416 1 8.591137699 -4.939500893 20.52289206 0.943894035 3.335606488 0.036912494 0.191264106 1455.497864 547468.5124 0.04753945 16928.95115 1.15E-05 4.939500893 2.391712454 (ac)S(ph)FLFGSR ddPTM_K562_Paclitaxel_30min_R1 2 SFLFGSR 7 0 Q7L9L4 Q7L9L4 MOB1B MOB kinase activator 1B 1 S(1)FLFGSR;S(1)FLFGSR 79.116 3.11E-05 14031900 134.37 0 53.941 127.32 0 0 0 0 134.93 114.8 TRUE FALSE 136.2515946 0 40.32292742 119.1542651 0 0 0 0 147.8906294 91.40369698 1.49065737 0 0.44115204 1.303604438 0 0 0 0 1.617993957 1 6.514180614 -11.1661311 16.00444889 1.000000245 0.479558232 0.036901184 0.644109078 0 0 0.613473977 0.148789295 6.82E-12 11.1661311 -0.520442013 (ac)S(ph)GDEMIFDPTMSK ddPTM_K562_Paclitaxel_30min_R1 17 SGDEMIFDPTMSK 13 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK;S(1)GDEMIFDPTMSK 108.43 6.48E-07 2151828900 100320.2 102813 141154.1 110815.5 86938.7 82541.9 83483.7 106083.7 98959.8 112960.2 TRUE FALSE 101724.9923 114038.471 105518.0017 103708.2898 98781.22282 97179.54702 99324.29626 97071.22753 108465.331 89938.84923 1.131046185 1.267955639 1.173219388 1.153097807 1.098315396 1.080506898 1.104353648 1.07930253 1.205989757 1 16.4566568 -6.483614025 2.121941928 1.098181373 1.200301309 0.370947582 0.0565219 0.329249632 2.949057734 0.017081516 0.027181668 3.28E-07 6.483614025 0.102119935 (ac)S(ph)GDEMIFDPTMSKK ddPTM_K562_Paclitaxel_30min_R1 5 SGDEMIFDPTMSKK 14 1 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK;S(1)GDEMIFDPTMSKK 103.34 8.23E-05 1090097000 19912.9 16797.3 37989.7 22347 17687.6 14947.1 13425.2 22656.7 22706.6 25390.5 TRUE FALSE 20191.74204 18631.28602 28398.73038 20913.76344 20096.95057 17597.75832 15972.56162 20731.87192 24887.67039 20215.90216 0.998804895 0.921615363 1.404771855 1.034520412 0.99411594 0.870490873 0.790098878 1.025522965 1.231093729 1 14.30320297 -6.518317301 24.22834992 0.974941601 1.111373628 0.106710119 0.157799617 286.9699948 1524263.025 0.048749348 0.064688858 3.03E-07 6.518317301 0.136432027 (ac)S(ph)GDHLHNDSQIEADFR ddPTM_K562_Paclitaxel_30min_R1 1 SGDHLHNDSQIEADFR 16 0 P11387 P11387 TOP1 DNA topoisomerase 1 1 S(1)GDHLHNDSQIEADFR 64.65 6.23E-09 0 0 0 210.38 0 59.554 0 66.181 133.6 165.81 0 TRUE FALSE 0 0 157.2669671 0 67.66626306 0 78.73849926 122.2498461 181.7367914 0 0 (ac)S(ph)GEDEQQEQTIAEDLVVTK ddPTM_K562_Paclitaxel_30min_R1 19 SGEDEQQEQTIAEDLVVTK 19 0 Q9UQ80;F8VR77 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 1 S(1)GEDEQQEQTIAEDLVVTK;S(0.999)GEDEQQEQT(0.001)IAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(0.999)GEDEQQEQT(0.001)IAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(0.986)GEDEQQEQT(0.014)IAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(0.959)GEDEQQEQT(0.041)IAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK;S(1)GEDEQQEQTIAEDLVVTK 167.14 8.95E-275 1376448100 55194.79 52079.394 80016.5 60289.557 51439.05 49525.56 48137.73 61916.27 57058.94 68946.76 TRUE FALSE 55967.68735 57765.59836 59815.34494 56422.85466 58445.91948 58308.22269 57271.61297 56656.09639 62539.70613 54895.37247 1.019533794 1.052285389 1.089624539 1.027825336 1.064678439 1.06217009 1.043286718 1.032074178 1.139252788 1 15.74439692 -5.285034805 4.654886141 1.058132174 1.017860205 0.089261267 0.035830884 0.400745892 22.21184312 0.008376881 0.049425166 5.19E-06 5.285034805 -0.040271969 (ac)S(ph)GHSPTRGAMQVAMNGK ddPTM_K562_Paclitaxel_30min_R1 2 SGHSPTRGAMQVAMNGK 17 1 E3W974;E7EPX3;B9ZVU2;Q9ULA0 E3W974 DNPEP Aspartyl aminopeptidase 1 S(0.468)GHS(0.468)PT(0.065)RGAMQVAMNGK;S(0.464)GHS(0.464)PT(0.072)RGAMQVAMNGK 72.531 9.95E-09 48099000 3277.1 3074.2 5432 3564.2 3155.8 2948.2 2847.1 3759.6 6770.3 3682.3 TRUE FALSE 3322.989511 3409.851552 4060.624418 3335.608165 3585.673388 3471.021875 3387.322362 3440.198513 7420.617566 2931.845239 1.133412319 1.163039408 1.385006399 1.137716316 1.223009094 1.183903512 1.155355104 1.173390214 2.531039997 1 11.51759324 -8.633899894 21.37672526 1.794718353 1.196930868 0.298702036 0.349437597 3.356846877 633.1005434 0.210366186 0.079510377 2.32E-09 8.633899894 -0.597787485 (ac)S(ph)GLRPGTQVDPEIELFVK ddPTM_K562_Paclitaxel_30min_R1 1 SGLRPGTQVDPEIELFVK 18 1 O15247;A6PVS0 O15247 CLIC2 Chloride intracellular channel protein 2 1 S(0.926)GLRPGT(0.074)QVDPEIELFVK 71.607 0.013185 0 364.42 187.6 353.27 212.07 204.86 380.88 285.66 356.87 298.96 216.69 TRUE FALSE 369.5230043 208.0828024 264.0826193 198.4687794 232.7654003 448.4237202 339.8624938 326.551666 327.6764438 172.5284591 2.141808988 1.206078137 1.530661207 1.150353863 1.349142058 2.599128994 1.969892362 1.892740872 1.899260247 1 7.430690548 (ac)S(ph)GPDVETPSAIQICR ddPTM_K562_Paclitaxel_30min_R1 1 SGPDVETPSAIQICR 15 0 O00154-2;O00154-3;O00154-4 O00154-2 1 S(1)GPDVETPSAIQICR 77.288 0.0020803 4025600 0 0 0 69.602 148.78 120.75 0 69.054 0 223.79 TRUE FALSE 0 0 0 65.13803925 169.0463549 142.1633171 0 63.18743168 0 178.1814752 0 0 0 0.365571332 0.948731369 0.797856887 0 0.354624024 0 1 7.477203543 -6.328786107 4.370930581 0.48569429 3.67E-11 0.328988444 0.327067633 0.288573402 10.85986057 0.098763814 0.152801142 4.69E-07 6.328786107 -0.48569429 (ac)S(ph)GSSSVAAMKK ddPTM_K562_Paclitaxel_30min_R1 2 SGSSSVAAMKK 11 1 P63218 P63218 GNG5 Guanine nucleotide-binding protein G(I)/G(S)/G(O) subunit gamma-5 1 S(0.892)GS(0.104)S(0.003)S(0.001)VAAMKK;S(0.809)GS(0.091)S(0.058)S(0.042)VAAMKK 72.879 0.0090734 41793000 5665.9 3947 9357.3 5698.7 4710.5 4082.9 3934.5 5869.5 6585.4 7850.2 TRUE FALSE 5745.240081 4377.946808 6994.933885 5333.210888 5352.149849 4806.944988 4681.050836 5370.849339 7217.957094 6250.324931 0.919190625 0.700435074 1.119131239 0.853269382 0.856299458 0.769071215 0.748929198 0.859291221 1.154813098 1 12.60971548 -8.747261846 24.44282935 1.07740648 0.850799538 0.384934641 0.113330409 157.6510027 271802.7631 0.077357716 0.028905985 1.79E-09 8.747261846 -0.226606943 (ac)S(ph)KGPAVGIDLGTTYSCVGVFQHGK ddPTM_K562_Paclitaxel_30min_R1 1 SKGPAVGIDLGTTYSCVGVFQHGK 24 1 P11142-2;P11142;E9PKE3;E9PNE6;E9PQQ4;E9PQK7;E9PK54;E9PLF4;E9PN25;E9PPY6;E9PI65 P11142-2 HSPA8 Heat shock cognate 71 kDa protein 1 S(0.888)KGPAVGIDLGT(0.069)T(0.037)Y(0.005)S(0.001)CVGVFQHGK 62.099 3.49E-07 11216000 1043.3 989.57 1841.5 1018.2 712.5 616.57 710.13 1045.3 965.94 1557.3 TRUE FALSE 1057.909419 1097.614599 1376.59055 952.8972093 809.5545627 725.9100324 844.8734604 956.4952404 1058.722853 1239.921405 0.853206836 0.885229172 1.110224038 0.768514202 0.652907966 0.585448424 0.681392753 0.771416024 0.853862873 1 10.27603296 -6.461280874 10.9702264 0.731581398 0.942724705 0.313368957 0.125708889 0.910687753 160.1426516 0.035682773 0.052887476 3.46E-07 6.461280874 0.211143307 (ac)S(ph)KSESPKEPEQLR ddPTM_K562_Paclitaxel_30min_R1 1 SKSESPKEPEQLR 13 2 F8W6I7;P09651-3;P09651-2;P09651;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 S(0.569)KS(0.167)ES(0.264)PKEPEQLR 93.561 0.00012379 32490000 3104.7 2517.9 5777.1 3413.7 2374.2 1799.5 1874.4 2795.4 3246.9 3545.9 TRUE FALSE 3148.175379 2792.812837 4318.599655 3194.760561 2697.606236 2118.616059 2230.057615 2557.913322 3558.779253 2823.243634 1.115091642 0.989221335 1.529658866 1.131592231 0.955498917 0.75041914 0.789892019 0.906019336 1.260528567 1 11.46313792 -6.719447846 4.141809536 0.919738516 1.20816243 0.309146012 0.181727407 0.254726312 9.286355822 0.058109339 0.073613105 1.91E-07 6.719447846 0.288423914 (ac)S(ph)LPES(ph)PHSPATLDYALEDPHQGQR ddPTM_K562_Paclitaxel_30min_R1 4 SLPESPHSPATLDYALEDPHQGQR 24 0 Q8N831 Q8N831 TSPYL6 Testis-specific Y-encoded-like protein 6 2 S(0.511)LPES(0.511)PHS(0.668)PAT(0.308)LDY(0.003)ALEDPHQGQR;S(0.903)LPES(0.903)PHS(0.095)PAT(0.095)LDY(0.002)ALEDPHQGQR;S(0.505)LPES(0.505)PHS(0.49)PAT(0.49)LDY(0.009)ALEDPHQGQR;S(0.636)LPES(0.636)PHS(0.669)PAT(0.058)LDY(0.002)ALEDPHQGQR 98.543 6.91E-14 44463000 870.15 623.34 1367.47 1107.2 651.66 663.84 853.71 589.46 738.11 717.31 TRUE FALSE 882.3347846 691.3983692 1022.235286 1036.189148 740.4271247 781.5627032 1015.697016 539.3816937 809.0087635 571.1218283 1.544915184 1.210596995 1.789872555 1.814304928 1.2964434 1.368469326 1.778424437 0.944424932 1.416525728 1 9.157654715 -8.266111437 24.99948188 1.135356499 1.534183372 0.415780433 0.229376542 432.3333111 2313329.535 0.121416073 0.061332097 5.42E-09 8.266111437 0.398826873 (ac)S(ph)LSHLYR ddPTM_K562_Paclitaxel_30min_R1 2 SLSHLYR 7 0 Q9UBB9;F6UKU9;F6SQZ1;F6XM96;F6UQ07 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 1 S(0.999)LS(0.001)HLYR;S(1)LSHLYR 84.359 0.0056509 0 0 975.98 0 100.3 0 0 0 0 0 0 TRUE FALSE 0 1082.540797 0 93.86720693 0 0 0 0 0 0 0 (ac)S(ph)NGYEDHMAEDCR ddPTM_K562_Paclitaxel_30min_R1 1 SNGYEDHMAEDCR 13 0 Q15717;M0QZR9 Q15717 ELAVL1 ELAV-like protein 1 1 S(0.667)NGY(0.333)EDHMAEDCR 56.225 2.81E-05 0 271.53 355.6 256.53 388.56 393.92 343.96 323.95 349.63 266.39 412.61 TRUE FALSE 275.3322577 394.4256106 191.7658288 363.6395007 447.5785731 404.9564766 385.4178214 319.9267492 291.9779498 328.5198555 0.83809929 1.200614221 0.583726754 1.106902656 1.362409503 1.232669715 1.173194907 0.973842962 0.888768045 1 8.359836758 -6.47989624 24.99730217 1.124621781 0.896546967 0.232523984 0.189261206 721.5533306 419632.8351 0.054895126 0.081416221 3.31E-07 6.47989624 -0.228074814 (ac)S(ph)NGYEDHMAEDCRGDIGR ddPTM_K562_Paclitaxel_30min_R1 1 SNGYEDHMAEDCRGDIGR 18 1 Q15717;M0QZR9 Q15717 ELAVL1 ELAV-like protein 1 1 S(0.992)NGY(0.008)EDHMAEDCRGDIGR 71.692 0.011391 29454000 121.07 170.34 288 197.02 168.65 201.93 61.335 54.224 153.66 147.05 TRUE FALSE 122.7653535 188.9382973 215.2908381 184.384019 191.6229853 237.7394503 72.97299606 49.61733274 168.4197296 117.0811293 1.048549448 1.613738255 1.838817574 1.574839773 1.636668406 2.030553102 0.623268639 0.423785909 1.438487403 1 6.871364756 -7.770170863 24.99973307 0.823367535 1.631525637 0.538826729 0.339836395 141.8831896 406231.6315 0.14004675 0.096048871 1.70E-08 7.770170863 0.808158102 (ac)S(ph)QERPTFYR ddPTM_K562_Paclitaxel_30min_R1 1 SQERPTFYR 9 1 Q16539-5;Q16539-3;Q16539-4;Q16539-2;Q16539;B5TY33 Q16539-5 MAPK14 Mitogen-activated protein kinase 14 1 S(0.94)QERPT(0.06)FYR 64.654 0.016736 46404000 54.923 151.84 165.89 44.064 0 0 0 113.94 55.059 92.083 TRUE FALSE 55.69209145 168.4184047 124.0090178 41.23793226 0 0 0 104.2600858 60.34766296 73.31643405 0.759612659 2.297143974 1.69142184 0.562465057 0 0 0 1.422056148 0.823112359 1 6.196064713 -6.273801135 7.09665003 0.491652129 1.656260852 0.412502816 0.563807069 0.139006481 42.33917006 0.165472752 0.258695658 5.32E-07 6.273801135 1.164608722 (ac)S(ph)QGDSNPAAIPHAAEDIQGDDR ddPTM_K562_Paclitaxel_30min_R1 2 SQGDSNPAAIPHAAEDIQGDDR 22 0 P68402-3;P68402-2;P68402-4;P68402 P68402-3 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta 1 S(0.5)QGDS(0.5)NPAAIPHAAEDIQGDDR;S(0.5)QGDS(0.5)NPAAIPHAAEDIQGDDR 70.281 1.08E-05 27180000 0 0 69.673 0 0 0 118.78 0 0 0 TRUE FALSE 0 0 52.08318945 0 0 0 141.3178849 0 0 0 0 (ac)S(ph)RPSSVSPRQPAPGGGGGGGPSPCGPGGGGR ddPTM_K562_Paclitaxel_30min_R1 1 SRPSSVSPRQPAPGGGGGGGPSPCGPGGGGR 31 2 D6RF50;D6RA70;Q9H6S0 D6RF50 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 S(0.25)RPS(0.25)S(0.25)VS(0.25)PRQPAPGGGGGGGPSPCGPGGGGR 51.306 5.87E-05 5140000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)S(ph)SDRQRSDDESPSTSSGSSDADQRDPAAPEPEEQEER ddPTM_K562_Paclitaxel_30min_R1 1 SSDRQRSDDESPSTSSGSSDADQRDPAAPEPEEQEER 37 3 R4GMM6;R4GN77;R4GNG6;R4GND1;A0A1B0GX65;Q969T4 R4GMM6 UBE2E3 Ubiquitin-conjugating enzyme E2 E3 1 S(0.337)S(0.337)DRQRS(0.301)DDES(0.018)PS(0.006)TSSGSSDADQRDPAAPEPEEQEER 49.069 6.25E-21 20359000 0 0 0 0 0 0 0 61.888 0 0 TRUE FALSE 0 0 0 0 0 0 0 56.63022811 0 0 0 (ac)S(ph)VAGGEIRGDTGGEDTAAPGR ddPTM_K562_Paclitaxel_30min_R1 2 SVAGGEIRGDTGGEDTAAPGR 21 1 Q9H773 Q9H773 DCTPP1 dCTP pyrophosphatase 1 1 S(0.993)VAGGEIRGDT(0.006)GGEDTAAPGR;S(0.591)VAGGEIRGDT(0.408)GGEDT(0.001)AAPGR 53.001 1.20E-07 25714000 210.475 237.92 337.83 163.27 284.42 149.46 217.02 196.59 168.25 105.38 TRUE FALSE 213.4222994 263.8969102 252.5406383 152.798593 323.1628193 175.9646325 258.1984121 179.8884524 184.4111643 83.90349816 2.5436639 3.145243238 3.009894031 1.821123032 3.851601261 2.097226413 3.077325949 2.143992281 2.197896015 1 6.390659057 -9.188531691 0.803360739 0.99627612 2.819472132 0.491248323 0.549180569 0.702044278 0.958956158 0.503399903 0.180569266 6.48E-10 9.188531691 1.823196012 (ac)S(ph)VELEEALPVTTAEGMAK ddPTM_K562_Paclitaxel_30min_R1 1 SVELEEALPVTTAEGMAK 18 0 Q92522 Q92522 H1FX Histone H1x 1 S(0.998)VELEEALPVT(0.001)TAEGMAK 50.222 0.01184 4485300 1483.4 1916.3 2562.2 2252.5 1782.3 1794.6 1546.8 2092.8 1628.9 2260.2 TRUE FALSE 1504.172177 2125.528115 1915.340921 2108.034732 2025.079435 2112.847113 1840.297225 1915.003577 1785.363123 1799.569999 0.835850885 1.181131112 1.064332547 1.171410244 1.125312955 1.174084428 1.022631643 1.064145089 0.992105405 1 10.81343651 -10.7652604 5.593182269 0.99999999 1.07929591 0.035187122 0.100244623 69765045.03 0.699418942 8.884755435 0.023421192 1.72E-11 10.7652604 0.07929592 (ac)S(ph)VPAFIDISEEDQAAELR ddPTM_K562_Paclitaxel_30min_R1 2 SVPAFIDISEEDQAAELR 18 0 E9PRI2;E7ESM3;Q7L2H7 E9PRI2 EIF3M Eukaryotic translation initiation factor 3 subunit M 1 S(1)VPAFIDISEEDQAAELR;S(1)VPAFIDISEEDQAAELR 145 1.77E-10 5902400 0 0 0 0 0 72.004 0 0 0 0 TRUE FALSE 0 0 0 0 0 84.77289841 0 0 0 0 0 (ac)S(ph)VTEEDLCHHMK ddPTM_K562_Paclitaxel_30min_R1 2 SVTEEDLCHHMK 12 0 Q8NI77 Q8NI77 KIF18A Kinesin-like protein KIF18A 1 S(0.59)VT(0.41)EEDLCHHMK;S(0.845)VT(0.155)EEDLCHHMK 50.791 0.026309 11473100 3895.5 3593.4 5106.7 4100.5 3595 3513.7 3489.2 4159.6 3215 5180.5 TRUE FALSE 3950.049019 3985.739564 3817.450426 3837.512283 4084.699864 4136.80536 4151.257485 3806.216017 3523.815115 4124.711256 0.957654675 0.966307534 0.925507312 0.930371133 0.990299589 1.002932109 1.0064359 0.922783628 0.854318011 1 12.01007741 -11.17785528 4.534215721 1.000008728 0.953366673 0.10106872 0.043444065 4.11E-06 7.46E-07 0.045151314 0.010948753 6.64E-12 11.17785528 -0.046642055 (ac)S(ph)YDYHQNWGR ddPTM_K562_Paclitaxel_30min_R1 1 SYDYHQNWGR 10 0 Q9H2U1-3;Q9H2U1-2;Q9H2U1 Q9H2U1-3 DHX36 ATP-dependent RNA helicase DHX36 1 S(0.649)Y(0.351)DYHQNWGR 84.916 0.00068899 4358900 262.65 345.36 230.19 178.4 354.14 273.71 161.04 145.88 288.92 301.1 TRUE FALSE 266.3279103 383.0675727 172.0756875 166.9582225 402.3798636 322.2486254 191.5964993 133.4865834 316.6720569 239.7356547 1.11092324 1.597874848 0.717772614 0.696426331 1.678431454 1.344183141 0.799199016 0.556807387 1.320921818 1 7.90530068 -7.76997414 24.98242355 0.882299301 1.187606376 0.12327986 0.34938827 395.719402 1158312.77 0.150909324 0.103558866 1.70E-08 7.76997414 0.305307074 (ac)S(ph)YGRPPPDVEGMTSLK ddPTM_K562_Paclitaxel_30min_R1 1 SYGRPPPDVEGMTSLK 16 1 J3QL05;J3KP15;Q01130-2;Q01130 J3QL05 SRSF2 Serine/arginine-rich splicing factor 2 1 S(0.561)Y(0.439)GRPPPDVEGMTSLK 65.295 0.025277 12846000 943.41 917.2 1300.1 1027.1 713.25 707.55 925.96 1235.3 510.11 1169.5 TRUE FALSE 956.6206507 1017.342998 971.8736756 961.2264031 810.4067254 833.024058 1101.656076 1130.353554 559.1083447 931.155258 1.02734817 1.09256001 1.043728924 1.032294448 0.870323953 0.894613493 1.183106755 1.213925975 0.600445887 1 9.862877928 -6.538746204 24.68633114 0.976432399 1.054957934 0.063309868 0.161646039 753.2538688 1171893.282 0.048490525 0.062621709 2.89E-07 6.538746204 0.078525535 (ac)S(ph)YTPGVGGDPAQLAQR ddPTM_K562_Paclitaxel_30min_R1 1 SYTPGVGGDPAQLAQR 16 0 O15400-2;O15400 O15400-2 STX7 Syntaxin-7 1 S(0.357)Y(0.286)T(0.357)PGVGGDPAQLAQR 67.456 0.0084975 0 0 0 0 0 0 0 65.485 0 71.875 0 TRUE FALSE 0 0 0 0 0 0 77.9104369 0 78.7789149 0 0 (ac)SCINLPT(ph)VLPGSPSK ddPTM_K562_Paclitaxel_30min_R1 1 SCINLPTVLPGSPSK 15 0 K7ERV3;P04183;K7ENW5;K7ES52;K7ERJ1 K7ERV3 TK1 "Thymidine kinase;Thymidine kinase, cytosolic" 1 S(0.157)CINLPT(0.526)VLPGS(0.165)PS(0.153)K 54.259 0.0094843 6483900 2295.8 2152.1 3407.9 2450.4 1803.9 1853.3 1995.9 2308.7 1377.2 2949 TRUE FALSE 2327.948283 2387.073556 2547.533497 2293.242312 2049.62172 2181.956733 2374.611606 2112.561525 1509.486213 2347.992181 0.991463388 1.016644593 1.084983807 0.976682261 0.872925275 0.929286201 1.011337101 0.899731073 0.642883833 1 11.19721189 -7.118610261 0.692364888 0.860362737 1.034283813 0.26366054 0.099341367 1.039433122 1.106465772 0.072719027 0.086681415 7.61E-08 7.118610261 0.173921076 (ac)SCINLPTVLPGS(ph)PSK ddPTM_K562_Paclitaxel_30min_R1 2 SCINLPTVLPGSPSK 15 0 K7ERV3;P04183;K7ENW5;K7ES52;K7ERJ1 K7ERV3 TK1 "Thymidine kinase;Thymidine kinase, cytosolic" 1 SCINLPTVLPGS(0.832)PS(0.168)K;SCINLPT(0.003)VLPGS(0.758)PS(0.239)K 103.39 3.59E-06 94472000 11694.4 10450 17768.4 13435.1 11115.1 9711.2 10665.7 13788 8560.4 16180.7 TRUE FALSE 11858.15768 11590.96634 13282.54766 12573.43282 12629.1648 11433.34497 12689.4609 12616.62334 9382.664669 12883.06446 0.92044542 0.899705685 1.031008399 0.975965995 0.980291983 0.887470912 0.984972243 0.979318498 0.728294475 1 13.65318818 (ac)SCINLPTVLPGS(ph)PSKTR ddPTM_K562_Paclitaxel_30min_R1 3 SCINLPTVLPGSPSKTR 17 1 K7ERV3;P04183;K7ENW5;K7ES52;K7ERJ1 K7ERV3 TK1 "Thymidine kinase;Thymidine kinase, cytosolic" 1 SCINLPTVLPGS(0.477)PS(0.477)KT(0.046)R;SCINLPTVLPGS(0.895)PS(0.079)KT(0.026)R;SCINLPT(0.317)VLPGS(0.631)PS(0.039)KT(0.012)R 145.94 1.11E-13 1147336000 5402.2 4632.3 7379.7 5591.8 5009.2 4492.3 3782.99 5574.3 6854.4 6569.9 TRUE FALSE 5477.847467 5138.070179 5516.603464 5233.166976 5691.537846 5288.94633 4500.792604 5100.728421 7512.795746 5230.950774 1.0471992 0.982244032 1.054608178 1.000423671 1.088050355 1.011087001 0.860415783 0.975105414 1.436219929 1 12.35285748 -8.712887285 24.99999958 1.218113721 1.001807473 0.366654646 0.113404429 96.9467772 49918.88683 0.072016773 0.027219641 1.94E-09 8.712887285 -0.216306248 (ac)SDAAVDTS(ph)SEITTK ddPTM_K562_Paclitaxel_30min_R1 1 SDAAVDTSSEITTK 14 0 B8ZZQ6;P06454-2;P06454 B8ZZQ6 PTMA "Prothymosin alpha;Prothymosin alpha, N-terminally processed;Thymosin alpha-1" 1 SDAAVDT(0.033)S(0.783)S(0.181)EIT(0.002)T(0.001)K 92.265 0.00024103 13097000 4020.3 3607.7 5443.1 4167 3494.3 2847.3 3122.4 4569.7 4886.4 4946.1 TRUE FALSE 4076.596604 4001.600886 4068.922086 3899.747271 3970.282819 3352.228677 3714.8591 4181.475462 5355.760553 3938.082105 1.035173086 1.01612937 1.03322429 0.990265608 1.00817675 0.851233821 0.943316823 1.061805049 1.3599921 1 11.94327747 -8.531519973 24.86072245 1.190296987 0.983453954 0.403654693 0.095383322 168.7560975 485495.6844 0.061534439 0.023337649 2.94E-09 8.531519973 -0.206843034 (ac)SDDDS(ph)RASTSSSSSSSSNQQTEKETNTPK ddPTM_K562_Paclitaxel_30min_R1 2 SDDDSRASTSSSSSSSSNQQTEKETNTPK 29 2 C9J2P0;P51965-3;P51965 C9J2P0 UBE2E1 Ubiquitin-conjugating enzyme E2 E1 1 S(0.038)DDDS(0.178)RAS(0.178)T(0.178)S(0.178)S(0.035)S(0.035)S(0.035)S(0.035)S(0.035)S(0.035)S(0.035)NQQT(0.002)EKETNTPK;S(0.075)DDDS(0.397)RAS(0.069)T(0.069)S(0.069)S(0.059)S(0.059)S(0.059)S(0.059)S(0.059)S(0.013)S(0.013)NQQT(0.001)EKETNTPK 54.259 0.0004299 38234000 1474.41 1189.1 3186.23 1560.73 1444.45 1088.04 884.09 1777.18 1897.3 2384.91 TRUE FALSE 1495.056289 1318.929959 2381.82683 1460.631763 1641.208545 1280.988617 1051.841462 1626.197466 2079.544142 1898.864033 0.787342465 0.694588942 1.254343012 0.769213455 0.864310723 0.674607868 0.553931953 0.856405429 1.095151683 1 10.89092089 -8.665083314 5.453659735 1.044755751 0.803137386 0.237255147 0.174476802 0.310148237 13.80923587 0.132653368 0.04705931 2.16E-09 8.665083314 -0.241618365 (ac)SDEFSLADALPEHS(ph)PAK ddPTM_K562_Paclitaxel_30min_R1 4 SDEFSLADALPEHSPAK 17 0 Q8NDC0 Q8NDC0 MAPK1IP1L MAPK-interacting and spindle-stabilizing protein-like 1 S(0.017)DEFS(0.085)LADALPEHS(0.898)PAK;S(0.286)DEFS(0.007)LADALPEHS(0.707)PAK;S(0.312)DEFS(0.012)LADALPEHS(0.676)PAK;S(0.021)DEFS(0.015)LADALPEHS(0.964)PAK 101.54 1.81E-140 176501500 6867.3 6448.9 9176.1 6768.8 5902.88 5864.6 7182.6 9688.7 5785.03 10833.2 TRUE FALSE 6963.463387 7153.012711 6859.480066 6334.679464 6706.952193 6904.604467 8545.460854 8865.58446 6340.70798 8625.387894 0.807321766 0.829297511 0.795266271 0.734422561 0.777582675 0.80049785 0.990733514 1.027847625 0.735121488 1 13.07437362 -7.717741536 8.994293037 0.940650328 0.789255601 0.461319782 0.078168462 0.273096369 52.53994384 0.029529411 0.02273706 1.92E-08 7.717741536 -0.151394727 (ac)SDS(ph)DLGEDEGLLSLAGK ddPTM_K562_Paclitaxel_30min_R1 1 SDSDLGEDEGLLSLAGK 17 0 A0A0A6YYL0;H0YKN5;Q9GZN2-2;Q9GZN2 A0A0A6YYL0 TGIF2-C20orf24;TGIF2 Homeobox protein TGIF2 1 S(0.41)DS(0.59)DLGEDEGLLSLAGK 63.727 2.73E-05 0 304.18 341.53 647.18 307.13 262.85 231.28 238.28 300.34 182.64 389.82 TRUE FALSE 308.4394585 378.8194004 483.7914048 287.4320565 298.6546201 272.2942607 283.4923861 274.8242423 200.1833881 310.37447 0.993765558 1.220523712 1.558734534 0.926081505 0.962239646 0.877308822 0.913388224 0.885460207 0.644973757 1 8.277866083 -6.428304825 9.177181519 0.882396083 1.253804577 0.54799055 0.154695721 0.291651183 26.34983819 0.044094624 0.065419274 3.73E-07 6.428304825 0.371408494 (ac)SDSGEQNYGERES(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SDSGEQNYGERESR 14 1 P62995 P62995 TRA2B Transformer-2 protein homolog beta 1 SDSGEQNYGERES(1)R 108.23 1.11E-12 4827100 0 0 0 0 0 118.67 0 0 0 0 TRUE FALSE 0 0 0 0 0 139.7144583 0 0 0 0 0 (ac)SDVEENNFEGRES(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SDVEENNFEGRESR 14 1 Q13595 Q13595 TRA2A Transformer-2 protein homolog alpha 1 SDVEENNFEGRES(1)R 81.789 6.71E-05 7237500 143.03 142.09 350.49 239.05 0 283.77 54.789 104.57 203.58 245.94 TRUE FALSE 145.0328613 157.6038667 262.0044647 223.7184029 0 334.0926252 65.18492673 95.68612579 223.1347686 195.817293 0.740654 0.804851626 1.338004732 1.142485424 0 1.706144642 0.332886466 0.488650028 1.139504919 1 7.613364368 (ac)SDY(ph)ENDDECWSVLEGFR ddPTM_K562_Paclitaxel_30min_R1 2 SDYENDDECWSVLEGFR 17 0 Q9H257;Q9H257-2;Q9H257-3 Q9H257 CARD9 Caspase recruitment domain-containing protein 9 1 S(0.416)DY(0.584)ENDDECWSVLEGFR;S(0.113)DY(0.887)ENDDECWSVLEGFR 158.34 6.14E-11 15655200 0 0 122.91 66.044 0 150.494 52.512 134.99 0 57.124 TRUE FALSE 0 0 91.87985037 61.80823344 0 177.1819979 62.47587787 123.5217569 0 45.48209744 0 0 2.020132218 1.358957412 0 3.895642633 1.373636692 2.715832467 0 1 5.507226882 -5.752756264 25 1.622738345 0.000105018 0.23472476 1.109273003 249.4007505 718046.9144 0.274373473 0.702165665 1.77E-06 5.752756264 -1.622633327 (ac)SEETVPEAASPPPPQGQPY(ph)FDRFSEDDPEYMR ddPTM_K562_Paclitaxel_30min_R1 1 SEETVPEAASPPPPQGQPYFDRFSEDDPEYMR 32 1 P35612;A0A1C7CYY0;P35612-5;P35612-6;P35612-4;P35612-3;C9J299;C9J080;C9JTM0;P35612-7;P35612-2;P35612-8 P35612 ADD2 Beta-adducin 1 S(0.229)EET(0.083)VPEAAS(0.265)PPPPQGQPY(0.422)FDRFS(0.001)EDDPEYMR 54.419 2.41E-06 34304000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)SELEQLRQEAEQLR ddPTM_K562_Paclitaxel_30min_R1 1 SELEQLRQEAEQLR 14 1 C9JD14;C9JZN1;C9JIS1;C9JXA5;Q9HAV0;P62879 C9JD14 GNB4;GNB2 Guanine nucleotide-binding protein subunit beta-4;Guanine nucleotide-binding protein G(I)/G(S)/G(T) subunit beta-2 0 54.486 0.014234 10797000 0 0 0 0 0 0 0 0 0 0 FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 (ac)SESS(ph)SKSSQPLASK ddPTM_K562_Paclitaxel_30min_R1 1 SESSSKSSQPLASK 14 1 P17096;P17096-2;P17096-3;A0A669KAX1;A0A1W2PRV2 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 S(0.064)ES(0.064)S(0.218)S(0.218)KS(0.218)S(0.218)QPLASK 50.452 8.73E-05 111480000 6339.8 4640.3 10171 6516.1 4557 4556.9 4460.6 5793.5 3307 8728.1 TRUE FALSE 6428.57676 5146.943646 7603.205257 6098.186511 5177.740551 5365.002233 5306.975564 5301.306013 3624.652126 6949.308429 0.925067124 0.74064113 1.094095238 0.877524228 0.74507278 0.772019588 0.763669597 0.762853753 0.521584581 1 12.7626537 -6.700144312 4.789363491 0.749411983 0.914043743 0.228816215 0.133637935 0.29114188 13.25871402 0.039103207 0.050082078 1.99E-07 6.700144312 0.16463176 (ac)SESSSKS(ph)SQPLASKQEK ddPTM_K562_Paclitaxel_30min_R1 2 SESSSKSSQPLASKQEK 17 2 P17096;P17096-2;P17096-3;A0A669KAX1 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 S(0.162)ES(0.162)S(0.162)S(0.162)KS(0.2)S(0.154)QPLASKQEK;S(0.007)ES(0.007)S(0.006)S(0.006)KS(0.559)S(0.414)QPLASKQEK 72.797 3.89E-08 102778000 6754.2 3978.7 13816.3 5738.7 3411.17 4113 2975.13 5964.3 5370.4 8203.2 TRUE FALSE 6848.779638 4413.107921 10328.20419 5370.645467 3875.829106 4842.382801 3539.645386 5457.595487 5886.250916 6531.383337 1.048595571 0.675677371 1.581319554 0.822282997 0.593416265 0.741402326 0.541944211 0.835595647 0.901225761 1 12.67317287 -6.501880677 24.97248377 0.744336054 1.083004795 0.275855115 0.240306433 958.2469065 1139619.716 0.066688149 0.097717659 3.15E-07 6.501880677 0.338668741 (ac)SET(ph)APAAPAAPAPAEKTPVK ddPTM_K562_Paclitaxel_30min_R1 1 SETAPAAPAAPAPAEKTPVK 20 1 P10412 P10412 HIST1H1E Histone H1.4 1 S(0.345)ET(0.477)APAAPAAPAPAEKT(0.178)PVK 102.72 3.07E-14 289320000 2251.8 1563.5 4131.3 2081.6 1412.4 1098.9 1321.7 2161.7 1061.6 3041.3 TRUE FALSE 2283.332147 1734.208217 3088.30222 1948.095493 1604.792792 1293.774486 1572.485675 1978.050092 1163.571423 2421.481391 0.94294846 0.716176562 1.275377226 0.804505664 0.66273183 0.534290493 0.649389948 0.816876025 0.48052049 1 11.2416742 -6.516287229 15.89423668 0.677231039 0.966630803 0.324071711 0.18504201 2.892670446 6972.609791 0.051800498 0.070315728 3.05E-07 6.516287229 0.289399764 (ac)SETAPAAPAAPAPAEKT(ph)PVK ddPTM_K562_Paclitaxel_30min_R1 1 SETAPAAPAAPAPAEKTPVK 20 1 P10412 P10412 HIST1H1E Histone H1.4 1 S(0.183)ET(0.183)APAAPAAPAPAEKT(0.634)PVK 69.122 0.0004218 14071000 1343.8 1201.8 2803.8 1638 930 797.81 1024.3 1406.8 602.66 2158.7 TRUE FALSE 1362.617346 1333.016588 2095.946013 1532.946011 1056.681745 939.2904017 1218.655578 1287.283559 660.5481858 1718.755755 0.792792892 0.775570691 1.219455415 0.891892875 0.614794593 0.546494404 0.709033598 0.748962472 0.384317658 1 10.74714883 -6.709193266 5.902796788 0.650770677 0.934586872 0.304961415 0.18590432 0.226201346 17.03137216 0.054686437 0.070008069 1.95E-07 6.709193266 0.283816195 (ac)SETAPAAPAAPAPAEKT(ph)PVKK ddPTM_K562_Paclitaxel_30min_R1 4 SETAPAAPAAPAPAEKTPVKK 21 2 P10412 P10412 HIST1H1E Histone H1.4 1 SETAPAAPAAPAPAEKT(1)PVKK;SETAPAAPAAPAPAEKT(1)PVKK;SETAPAAPAAPAPAEKT(1)PVKK;SETAPAAPAAPAPAEKT(0.999)PVKK 67.413 5.60E-05 196120000 11334.3 6643.8 25486.7 11080.3 7205.1 5857.3 6004.1 10597 8983.2 16369.2 TRUE FALSE 11493.01517 7369.192552 19052.26737 10369.65915 8186.556603 6896.009914 7143.346631 9696.718706 9846.076498 13033.14805 0.881829557 0.565419231 1.461831577 0.795637332 0.628133477 0.529113142 0.548090653 0.744004339 0.755464179 1 13.66989798 -6.517154548 24.88294905 0.675427063 0.962510749 0.197923539 0.238710662 358.0864098 1556596.472 0.069615701 0.092886604 3.04E-07 6.517154548 0.287083686 (ac)SETAPAETAT(ph)PAPVEKS(ph)PAK ddPTM_K562_Paclitaxel_30min_R1 1 SETAPAETATPAPVEKSPAK 20 1 P16401 P16401 HIST1H1B Histone H1.5 2 S(0.01)ET(0.003)APAET(0.449)AT(0.539)PAPVEKS(1)PAK 54.658 0.00091769 5435400 2412.9 1825.4 4155.2 2409.2 1775.5 1577.6 1517.9 2159 1467.2 3356.7 TRUE FALSE 2446.688044 2024.703345 3106.168369 2254.684695 2017.353159 1857.365209 1805.913601 1975.579474 1608.131116 2672.602697 0.915470169 0.757577378 1.16222601 0.843628833 0.754827181 0.694964954 0.675713454 0.739196842 0.601709755 1 11.38402967 -6.6516303 3.677389331 0.724608033 0.93590233 0.300764737 0.134227806 0.260421917 6.722964839 0.039541729 0.051841076 2.23E-07 6.6516303 0.211294297 (ac)SETAPAETATPAPVEKS(ph)PAK ddPTM_K562_Paclitaxel_30min_R1 2 SETAPAETATPAPVEKSPAK 20 1 P16401 P16401 HIST1H1B Histone H1.5 1 S(0.022)ET(0.003)APAET(0.254)AT(0.064)PAPVEKS(0.658)PAK;S(0.161)ET(0.028)APAET(0.232)AT(0.03)PAPVEKS(0.549)PAK 70.555 2.12E-13 184913000 7267.76 6205.09 15353.3 8339.68 6421.99 5465.39 5651.37 8291.26 5638.01 11055.7 TRUE FALSE 7369.531063 6882.58271 11477.16953 7804.810252 7296.773763 6434.600179 6723.687955 7586.865711 6179.566052 8802.542271 0.837204848 0.781885789 1.303847136 0.886654106 0.828939361 0.730993386 0.763834782 0.861894834 0.702020605 1 13.10370453 -6.520310903 22.10599722 0.80615275 0.978433137 0.185024914 0.14965192 35.71121107 307437.0264 0.044227082 0.058372684 3.02E-07 6.520310903 0.172280387 (ac)SETAPAETATPAPVEKS(ph)PAKK ddPTM_K562_Paclitaxel_30min_R1 2 SETAPAETATPAPVEKSPAKK 21 2 P16401 P16401 HIST1H1B Histone H1.5 1 S(0.002)ETAPAETAT(0.001)PAPVEKS(0.997)PAKK;SETAPAETATPAPVEKS(1)PAKK 78.837 0.0003243 408110000 5205 3852.5 13102 5674.7 3745.9 2650.3 2550.1 5411.9 5320.5 8423.6 TRUE FALSE 5277.886059 4273.128978 9794.238057 5310.750141 4256.154999 3120.293493 3033.968163 4952.125315 5831.557798 6706.865696 0.786937789 0.63712756 1.46033013 0.791837854 0.634596724 0.465238702 0.452367514 0.738366554 0.869490767 1 12.711423 -6.518133877 24.63481559 0.661935766 0.961873468 0.179363774 0.251214176 260.7090429 1353575.752 0.075346784 0.100023765 3.03E-07 6.518133877 0.299937701 (ac)SETAPLAPTIPAPAEKT(ph)PVKK ddPTM_K562_Paclitaxel_30min_R1 2 SETAPLAPTIPAPAEKTPVKK 21 2 P16402 P16402 HIST1H1D Histone H1.3 1 SETAPLAPTIPAPAEKT(1)PVKK;SETAPLAPTIPAPAEKT(1)PVKK 57.936 0.00024257 19178500 5942.7 3718.9 13232.9 5473 4219.7 3043.3 3754.5 5567.9 4610.3 8800.6 TRUE FALSE 6025.916135 4124.942079 9892.090733 5121.986276 4794.49458 3582.986525 4466.896775 5094.872141 5053.139914 7007.032889 0.85998114 0.588685988 1.411737448 0.730977913 0.684240342 0.511341474 0.637487628 0.727108353 0.72115259 1 12.77458795 -6.495135104 24.94797351 0.687961127 0.942717915 0.190511463 0.220436308 1077.984012 969358.0656 0.06123353 0.090569307 3.20E-07 6.495135104 0.254756788 (ac)SGDHLHNDS(ph)QIEADFR ddPTM_K562_Paclitaxel_30min_R1 1 SGDHLHNDSQIEADFR 16 0 P11387 P11387 TOP1 DNA topoisomerase 1 1 S(0.013)GDHLHNDS(0.987)QIEADFR 71.535 4.61E-08 190250000 208.65 133.86 292.04 211.88 238.35 199.73 161.87 53.593 282.16 206.35 TRUE FALSE 211.5717437 148.4752875 218.3108901 198.2909651 270.8173053 235.1493112 192.5839875 49.03994013 309.2627287 164.2957567 1.287749288 0.903707378 1.328767671 1.206914707 1.648352402 1.431256143 1.172178706 0.298485738 1.882353719 1 7.36015141 -8.005572688 24.89716369 1.001318331 1.296309191 0.063912191 0.39693806 550.19518 2458111.054 0.16482028 0.107265107 9.87E-09 8.005572688 0.294990861 (ac)SIFT(ph)PTNQIR ddPTM_K562_Paclitaxel_30min_R1 4 SIFTPTNQIR 10 0 Q9Y3A5;A0A087X020;F8WE72 Q9Y3A5 SBDS Ribosome maturation protein SBDS 1 SIFT(0.993)PT(0.007)NQIR;SIFT(0.989)PT(0.01)NQIR;S(0.002)IFT(0.984)PT(0.014)NQIR;S(0.155)IFT(0.829)PT(0.016)NQIR 104.43 0.0012463 11622500 168.01 266.78 452.79 157.61 383.84 190.459 245.965 224.28 419.19 447.829 TRUE FALSE 170.3626584 295.9079426 338.4775645 147.5016 436.1255065 224.2342295 292.6355747 205.2260141 459.4550725 356.561204 0.477793592 0.829893828 0.949283211 0.413678208 1.223143465 0.628880055 0.820716251 0.57557023 1.28857281 1 8.478005927 -3.473198275 0.101432084 1.149018932 1.56E-16 0.14992279 0.26236707 206.2815855 2.060492252 3.610901532 32.90953801 0.000336358 3.473198275 -1.149018932 (ac)SKSES(ph)PKEPEQLR ddPTM_K562_Paclitaxel_30min_R1 1 SKSESPKEPEQLR 13 2 F8W6I7;P09651-3;P09651-2;P09651;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 S(0.051)KS(0.121)ES(0.828)PKEPEQLR 50.534 0.022954 277950000 3837 2361.4 7728.9 4326.1 3407.3 2727.9 2542.9 3817.9 4642.6 4830.9 TRUE FALSE 3890.729838 2619.225638 5777.643605 4048.643309 3871.431946 3211.654763 3025.402 3493.545564 5088.542474 3846.359928 1.011535558 0.680962179 1.502106852 1.052590861 1.006518375 0.834985499 0.786562375 0.90827318 1.322950158 1 11.90927806 -6.94364689 4.556307809 0.950232354 1.064335781 0.029840745 0.229139714 0.774971103 33.46695218 0.075589038 0.085232588 1.14E-07 6.94364689 0.114103427 (ac)SLLDGLASS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 SLLDGLASSPR 11 0 E9PI10;E9PK87;F8W6N5;Q3YBR2 E9PI10 TBRG1 Transforming growth factor beta regulator 1 1 SLLDGLAS(0.311)S(0.689)PR;SLLDGLAS(0.197)S(0.803)PR;SLLDGLAS(0.049)S(0.951)PR;SLLDGLAS(0.066)S(0.934)PR 158.58 0.0003261 12947100 436.41 287.98 489.673 468.159 523.27 248.08 467.257 440.17 266.202 452.06 TRUE FALSE 442.5210864 319.4226303 366.048995 438.1333771 594.548233 292.0735048 555.9165765 402.774811 291.7718915 359.9299239 1.229464563 0.887457833 1.017000729 1.217274108 1.651844411 0.811473249 1.544513361 1.119036747 0.810635271 1 8.49157224 -8.621660661 6.14813335 0.912171463 1.189500459 0.171277341 0.249923128 0.380190115 19.71889556 0.174287085 0.063652826 2.39E-09 8.621660661 0.277328996 (ac)SLPES(ph)PHSPATLDYALEDPHQGQR ddPTM_K562_Paclitaxel_30min_R1 1 SLPESPHSPATLDYALEDPHQGQR 24 0 Q8N831 Q8N831 TSPYL6 Testis-specific Y-encoded-like protein 6 1 S(0.062)LPES(0.454)PHS(0.382)PAT(0.102)LDYALEDPHQGQR 100.94 2.37E-08 69629000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)SLPESPHS(ph)PATLDYALEDPHQGQR ddPTM_K562_Paclitaxel_30min_R1 1 SLPESPHSPATLDYALEDPHQGQR 24 0 Q8N831 Q8N831 TSPYL6 Testis-specific Y-encoded-like protein 6 1 S(0.063)LPES(0.41)PHS(0.525)PAT(0.002)LDYALEDPHQGQR 119.62 9.75E-26 89621000 147.5 0 0 0 0 0 0 70.828 0 0 TRUE FALSE 149.5654551 0 0 0 0 0 0 64.81071931 0 0 0 (ac)SNGYEDHMAEDCRGDIGR ddPTM_K562_Paclitaxel_30min_R1 2 SNGYEDHMAEDCRGDIGR 18 1 Q15717;M0QZR9 Q15717 ELAVL1 ELAV-like protein 1 0 ; 79.022 0.0003098 38514000 136.49 280.874 232.55 169.55 64.188 0 0 124.93 269.27 288.03 FALSE TRUE 138.4012811 311.5407732 173.8398764 158.6758219 72.93149231 0 0 114.3164167 295.1345866 229.3293279 0.603504499 1.3584864 0.758035956 0.691912471 0.318020783 0 0 0.498481454 1.286946547 1 7.841277056 -8.754878414 24.96782334 1.143473345 0.527059281 0.298919969 0.37668393 196.5738162 748085.5727 0.310267301 0.111117267 1.76E-09 8.754878414 -0.616414064 (ac)SPT(ph)IS(ph)HK ddPTM_K562_Paclitaxel_30min_R1 1 SPTISHK 7 0 A0A2R8YEX5;A0A2R8Y359;H7C532;A0A2R8Y5I5;A0A2R8Y6H1;A0A2R8YF57;O00400 A0A2R8YEX5 SLC33A1 Acetyl-coenzyme A transporter 1 2 S(0.001)PT(1)IS(0.999)HK 72.879 0.030786 17202000 255.52 362.09 438.89 363.81 273.98 364.88 319.19 290.16 307.64 496.02 TRUE FALSE 259.0980683 401.6242107 328.0867914 340.476855 311.3007145 429.5863448 379.7546362 265.5090969 337.1901966 394.9308517 0.656059326 1.01694818 0.830744901 0.862117643 0.788241063 1.087750787 0.961572474 0.67229262 0.853795532 1 8.625456264 (ac)SQGDS(ph)NPAAIPHAAEDIQGDDRWMSQHNR ddPTM_K562_Paclitaxel_30min_R1 1 SQGDSNPAAIPHAAEDIQGDDRWMSQHNR 29 1 P68402-3;P68402-2;P68402-4;P68402 P68402-3 PAFAH1B2 Platelet-activating factor acetylhydrolase IB subunit beta 1 S(0.217)QGDS(0.783)NPAAIPHAAEDIQGDDRWMSQHNR 55.846 4.17E-07 53071000 0 0 0 0 0 0 0 64.167 0 0 TRUE FALSE 0 0 0 0 0 0 0 58.71561283 0 0 0 (ac)SRLS(ph)WGYR ddPTM_K562_Paclitaxel_30min_R1 1 SRLSWGYR 8 1 Q8N1Q1 Q8N1Q1 CA13 Carbonic anhydrase 13 1 S(0.465)RLS(0.535)WGYR 60.91 1.97E-05 5643400 273.53 212.51 291.27 340.33 289.38 318.23 369.83 372.31 137.72 329.02 TRUE FALSE 277.3602639 235.7125605 217.7352861 318.5027571 328.7984552 374.6636223 440.0033119 340.6799416 150.9486213 261.9655434 1.058766204 0.899784595 0.831160019 1.215819275 1.255121002 1.430201917 1.679622847 1.300476151 0.576215556 1 8.033233255 -6.338024571 5.885959672 1.253947957 0.927736573 0.162426198 0.276830493 0.361650098 21.59746771 0.082262224 0.123455549 4.59E-07 6.338024571 -0.326211384 (ac)SSDASQGVIT(ph)TPPPPSMPHKER ddPTM_K562_Paclitaxel_30min_R1 2 SSDASQGVITTPPPPSMPHKER 22 1 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 S(0.12)S(0.12)DAS(0.12)QGVIT(0.601)T(0.038)PPPPSMPHKER;S(0.066)S(0.066)DAS(0.066)QGVIT(0.401)T(0.401)PPPPSMPHKER 78.674 2.08E-18 142649000 2566.6 2285.19 4076.7 2682.6 2170.9 2399.5 1876.73 2825.8 3143 3087.7 TRUE FALSE 2602.540319 2534.694772 3047.486665 2510.550043 2466.613334 2825.017634 2232.82972 2585.730652 3444.899193 2458.425045 1.058620975 1.031023816 1.239609347 1.021202598 1.003330705 1.149116846 0.908235834 1.0517834 1.40126265 1 11.26351865 (ac)SSDRQRS(ph)DDESPSTSSGSSDADQRDPAAPEPEEQEER ddPTM_K562_Paclitaxel_30min_R1 1 SSDRQRSDDESPSTSSGSSDADQRDPAAPEPEEQEER 37 3 R4GMM6;R4GN77;R4GNG6;R4GND1;A0A1B0GX65;Q969T4 R4GMM6 UBE2E3 Ubiquitin-conjugating enzyme E2 E3 1 S(0.295)S(0.295)DRQRS(0.33)DDES(0.047)PS(0.019)T(0.008)S(0.004)S(0.002)GS(0.001)S(0.001)DADQRDPAAPEPEEQEER 44.776 8.11E-21 23419000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)SSENCFVAENS(ph)SLHPESGQENDATSPHFSTR ddPTM_K562_Paclitaxel_30min_R1 2 SSENCFVAENSSLHPESGQENDATSPHFSTR 31 0 B4E009;Q07108 B4E009 CD69 Early activation antigen CD69 1 S(0.092)S(0.092)ENCFVAENS(0.407)S(0.407)LHPES(0.001)GQENDATSPHFSTR;S(0.076)S(0.076)ENCFVAENS(0.415)S(0.415)LHPES(0.017)GQENDATSPHFSTR 65.171 1.40E-12 27785000 87.593 0 219.696 73.271 0 61.955 0 129.03 66.891 145.97 TRUE FALSE 88.81957225 0 164.2310276 68.57172601 0 72.94184936 0 118.0680961 73.31617943 116.2212339 0.76422844 0 1.413089692 0.590010308 0 0.627612072 0 1.015890919 0.630832912 1 6.860729866 -8.316546647 24.99997721 0.86752156 0.492903256 0.157087582 0.420996892 643.331559 291850.422 0.228571425 0.109802233 4.82E-09 8.316546647 -0.374618304 (ac)SSEPPPPPQPPTHQASVGLLDTPRS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SSEPPPPPQPPTHQASVGLLDTPRSR 26 1 H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9;Q9Y2V2 H3BTK3 CARHSP1 Calcium-regulated heat stable protein 1 1 SSEPPPPPQPPT(0.017)HQAS(0.178)VGLLDT(0.064)PRS(0.74)R 53.002 0.0012512 284510000 0 0 171.28 63.607 60.052 0 0 0 124.64 174.1 TRUE FALSE 0 0 128.0382456 59.52753171 68.23209909 0 0 0 136.6122289 138.6183244 0 0 0.923674746 0.429434795 0.492230009 0 0 0 0.98552792 1 7.114974175 -8.773738668 24.94208383 0.992764863 0.246045285 0.519947722 0.292611795 217.6168679 441297.1706 0.298846046 0.079439515 1.68E-09 8.773738668 -0.746719578 (ac)SSILPFT(ph)PPVVKR ddPTM_K562_Paclitaxel_30min_R1 1 SSILPFTPPVVKR 13 1 K7ESI8;K7EL92;K7ERC7;K7EJX0;B7Z5N5;Q15796-2;Q15796 K7ESI8 SMAD2 Mothers against decapentaplegic homolog;Mothers against decapentaplegic homolog 2 1 S(0.22)S(0.22)ILPFT(0.561)PPVVKR 69.229 0.0083839 100700000 2039.5 1635.8 2235.5 1946.6 1475 1706.9 1590.3 2062.7 1702.7 2363 TRUE FALSE 2068.059292 1814.402176 1671.120377 1821.753789 1675.919972 2009.594749 1892.051123 1887.46076 1866.251943 1881.419303 1.099201698 0.964379484 0.888223255 0.968286966 0.890774305 1.068126996 1.005650957 1.003211117 0.991938341 1 10.8776057 -7.26989115 24.98641057 1.013477764 0.958527045 0.165463866 0.057663441 1198.184714 3542248.959 0.02059768 0.018476854 5.37E-08 7.26989115 -0.054950719 (ac)SSS(ph)PLSK ddPTM_K562_Paclitaxel_30min_R1 1 SSSPLSK 7 0 Q5JRR9;P22314 Q5JRR9 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 S(0.01)S(0.155)S(0.834)PLS(0.001)K 67.897 0.014237 23083000 9962.5 8746.2 13177 10621 8484.6 7388.6 7491.3 10122 9663.1 10368 TRUE FALSE 10102.00574 9701.139694 9850.303379 9939.816598 9640.346165 8698.864469 8912.735068 9262.07292 10591.28393 8254.995909 1.223744487 1.17518407 1.193253575 1.204097096 1.167819618 1.053769689 1.079677709 1.121996064 1.283015043 1 13.01105178 -7.031881159 8.983724576 1.113188853 1.195637159 0.28174864 0.069043431 0.558404665 150.6450591 0.022659214 0.023073433 9.29E-08 7.031881159 0.082448306 (ac)SSSSSSPRET(ph)YEEDREYESQAKR ddPTM_K562_Paclitaxel_30min_R1 1 SSSSSSPRETYEEDREYESQAKR 23 3 B7WPG3;V9GYK2;Q8WVV9-2;Q8WVV9-5;Q8WVV9 B7WPG3 HNRNPLL Heterogeneous nuclear ribonucleoprotein L-like 1 S(0.089)S(0.089)S(0.089)S(0.089)S(0.079)S(0.079)PRET(0.259)Y(0.229)EEDREYESQAKR 42.348 0.0094701 31466000 1237.6 1138.5 1778.9 1343.6 1094.4 1356.2 925.4 1334.9 1770.5 1376.7 TRUE FALSE 1254.930218 1262.80528 1329.794694 1257.42751 1243.475808 1596.703028 1100.989819 1221.491913 1940.564436 1096.127784 1.14487584 1.152060278 1.213174881 1.147154125 1.134425955 1.456675992 1.004435646 1.114369994 1.770381577 1 10.09820028 -7.346627289 0.783740268 1.277536862 1.157090295 0.038703249 0.216480605 2.637739479 3.483953232 0.151879639 0.134318147 4.50E-08 7.346627289 -0.120446567 (ac)SVCTLSVPVSSLS(ph)PGRR ddPTM_K562_Paclitaxel_30min_R1 1 SVCTLSVPVSSLSPGRR 17 1 P86452 P86452 ZBED6 Zinc finger BED domain-containing protein 6 1 SVCTLSVPVS(0.176)S(0.176)LS(0.648)PGRR 92.8 1.61E-07 12201000 158.31 168.22 0 212.45 113.59 0 131.6 255.83 164.06 176.8 TRUE FALSE 160.5268284 186.5868285 0 198.8244079 129.0628811 0 156.570413 234.0956447 179.818696 140.768063 1.140363979 1.325491199 0 1.412425544 0.916847745 0 1.112258063 1.662988321 1.27741117 1 7.137176246 -7.995842607 24.98725811 1.359644596 0.798017014 0.191067371 0.47841774 179.5050716 1078877.264 0.201629956 0.135304753 1.01E-08 7.995842607 -0.561627582 (ac)TAAPAS(ph)PQQIRDR ddPTM_K562_Paclitaxel_30min_R1 1 TAAPASPQQIRDR 13 1 O95402;B8ZZF3;M0R2Y4;O95402-2 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 TAAPAS(1)PQQIRDR 89.44 0.00081424 22676000 0 0 151.88 122.48 49.267 0 63.207 146.05 116.03 51.444 TRUE FALSE 0 0 113.5360156 114.624681 55.9779995 0 75.20019829 133.6421409 127.1751999 40.95968456 0 0 2.771896727 2.798475677 1.366660903 0 1.83595648 3.262772707 3.104887191 1 5.3561327 -8.004600808 24.75926021 2.620171077 1.232670385 0.207485672 1.125619257 274.4574822 1476994.002 0.519464571 0.339939697 9.89E-09 8.004600808 -1.387500693 (ac)TDAQMADFGAAAQY(ph)LR ddPTM_K562_Paclitaxel_30min_R1 1 TDAQMADFGAAAQYLR 16 0 P13533 P13533 MYH6 Myosin-6 1 TDAQMADFGAAAQY(1)LR 46.3 0.023528 2207400 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)TECFLPPTS(ph)SPSEHR ddPTM_K562_Paclitaxel_30min_R1 1 TECFLPPTSSPSEHR 15 0 J3QLT3;E7ENF8;A0A1W2PRI7;Q15311 J3QLT3 RALBP1 RalA-binding protein 1 1 TECFLPPT(0.005)S(0.832)S(0.133)PS(0.03)EHR 120.92 3.02E-06 71847000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 (ac)TECFLPPTSS(ph)PSEHR ddPTM_K562_Paclitaxel_30min_R1 3 TECFLPPTSSPSEHR 15 0 J3QLT3;E7ENF8;A0A1W2PRI7;Q15311 J3QLT3 RALBP1 RalA-binding protein 1 1 T(0.001)ECFLPPT(0.045)S(0.239)S(0.702)PS(0.014)EHR;TECFLPPT(0.004)S(0.197)S(0.701)PS(0.098)EHR;TECFLPPT(0.238)S(0.139)S(0.597)PS(0.026)EHR 112.62 7.73E-05 115830000 103.81 57.461 56.651 339.44 351.78 168.76 250.1 123.05 362.47 384.2 TRUE FALSE 105.2636603 63.7347863 42.3487544 317.6698377 399.6983917 198.6872165 297.5551694 112.5961344 397.2868631 305.8998291 0.344111537 0.208351821 0.138439941 1.038476676 1.306631628 0.649517252 0.97272094 0.368081717 1.298748235 1 8.256915491 -6.260249627 24.97680722 0.92497838 0.228106139 0.601381582 0.26721768 73.20991328 1536899.119 0.073452389 0.118678611 5.49E-07 6.260249627 -0.696872242 (ac)TECFLPPTSS(ph)PSEHRR ddPTM_K562_Paclitaxel_30min_R1 2 TECFLPPTSSPSEHRR 16 1 J3QLT3;E7ENF8;A0A1W2PRI7;Q15311 J3QLT3 RALBP1 RalA-binding protein 1 1 TECFLPPT(0.056)S(0.056)S(0.598)PS(0.291)EHRR;TECFLPPT(0.168)S(0.111)S(0.433)PS(0.288)EHRR 85.734 2.11E-07 114706000 62.377 0 128.48 0 0 0 123.56 0 0 62.877 TRUE FALSE 63.25047045 0 96.04363498 0 0 0 147.004865 0 0 50.06263289 1.263426768 0 1.918469514 0 0 0 2.936418972 0 0 1 5.645662262 (ac)TECFLPPTSSPS(ph)EHRR ddPTM_K562_Paclitaxel_30min_R1 2 TECFLPPTSSPSEHRR 16 1 J3QLT3;E7ENF8;A0A1W2PRI7;Q15311 J3QLT3 RALBP1 RalA-binding protein 1 1 TECFLPPT(0.045)S(0.077)S(0.312)PS(0.566)EHRR;TECFLPPT(0.044)S(0.044)S(0.198)PS(0.713)EHRR 73.722 0.00087291 115822000 71.219 136.75 113.74 47.559 139.48 116.57 0 126.27 142.74 0 TRUE FALSE 72.21628573 151.6808275 85.02493028 44.50877861 158.4795374 137.2420528 0 115.5425753 156.4508148 0 0 (ac)TEVMMNTQPMEEIGLS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 TEVMMNTQPMEEIGLSPR 18 0 B5MBX5 B5MBX5 LBH 1 TEVMMNTQPMEEIGLS(1)PR;TEVMMNTQPMEEIGLS(1)PR;TEVMMNTQPMEEIGLS(1)PR;TEVMMNTQPMEEIGLS(1)PR 236.16 0 13146800 177.77 0 192.47 205.27 0 107.76 111.41 191.38 114.99 137.78 TRUE FALSE 180.2593285 0 143.8785681 192.104901 0 126.869723 132.5494659 175.1210744 126.0353033 109.7003604 1.643197232 0 1.311559666 1.751178395 0 1.156511451 1.208286513 1.596358242 1.148905098 1 6.777424455 -7.510172715 24.65729788 1.272986287 0.916852823 0.056387471 0.570909817 1432.877618 2780650.765 0.204668682 0.171862899 3.09E-08 7.510172715 -0.356133464 (ac)TRS(ph)CSAVGCS(ph)TRDTVLSRER ddPTM_K562_Paclitaxel_30min_R1 1 TRSCSAVGCSTRDTVLSRER 20 3 D6R957;F2Z371;D6RCT5;D6REM3;Q9H5L6 D6R957 THAP9 DNA transposase THAP9 2 T(0.205)RS(0.79)CS(0.006)AVGCS(0.345)T(0.293)RDT(0.134)VLS(0.227)RER 58.848 0.0024564 23448000 381.96 397.29 393.5 405.53 502.74 509.52 381.14 317.66 399.39 367.47 TRUE FALSE 387.3086184 440.6674657 294.1560583 379.5211209 571.2216995 599.876218 453.4593253 290.6728002 437.753194 292.5794123 1.323772631 1.506146527 1.00538878 1.297155934 1.952364642 2.050302218 1.54986751 0.993483437 1.496185909 1 8.192684446 -8.241371466 23.56917116 1.183626017 1.533321312 0.217694403 0.314617667 676.4441024 794465.3293 0.16552959 0.095367238 5.74E-09 8.241371466 0.349695296 (ac)VAGMLGLS(ph)CK ddPTM_K562_Paclitaxel_30min_R1 1 VAGMLGLSCK 10 0 H7BY72 H7BY72 MECP2 1 VAGMLGLS(1)CK 50.108 0.026651 0 172.87 64.848 0 61.437 135.79 0 48.841 0 59.849 117.34 TRUE FALSE 175.2907133 71.92832394 0 57.4967058 154.2868969 0 58.10832478 0 65.59776386 93.42604359 1.87625106 0.769895857 0 0.615424817 1.651433487 0 0.621971375 0 0.702135736 1 6.545752869 -7.292276203 24.99991864 0.412143381 0.895796898 0.160228087 0.569439416 1428.616302 1158197.727 0.204844891 0.180675235 5.10E-08 7.292276203 0.483653516 (ac)VDYSVWDHIEVS(ph)DDEDETHPNIDTASLFR ddPTM_K562_Paclitaxel_30min_R1 4 VDYSVWDHIEVSDDEDETHPNIDTASLFR 29 0 K7EJ06;K7EQA9;K7EKQ2;Q16543 K7EJ06 CDC37 "Hsp90 co-chaperone Cdc37;Hsp90 co-chaperone Cdc37, N-terminally processed" 1 VDY(0.069)S(0.082)VWDHIEVS(0.848)DDEDET(0.001)HPNIDTASLFR;VDY(0.089)S(0.104)VWDHIEVS(0.807)DDEDETHPNIDTASLFR;VDY(0.053)S(0.061)VWDHIEVS(0.886)DDEDETHPNIDTASLFR;VDY(0.001)S(0.001)VWDHIEVS(0.999)DDEDETHPNIDTASLFR 124.1 4.20E-32 624941800 0 0 0 0 116.823 0 0 0 0 0 TRUE FALSE 0 0 0 0 132.7362704 0 0 0 0 0 0 (ac)VSVINTVDTSHEDMIHDAQMDYYGTR ddPTM_K562_Paclitaxel_30min_R1 3 VSVINTVDTSHEDMIHDAQMDYYGTR 26 0 P55735 P55735 SEC13 Protein SEC13 homolog 0 ;; 93.966 1.11E-25 36966000 137.64 222.018 392.88 454.111 0 172.67 140.203 360.73 129.9 185.63 FALSE TRUE 139.5673847 246.2586761 293.6925849 424.986353 0 203.2906001 166.8057873 330.0837349 142.3774754 147.7985041 0.944308506 1.666178407 1.987114732 2.875444211 0 1.375457765 1.128602677 2.233336101 0.963321491 1 7.207487858 -11.01990801 0.18730973 0.582276899 1.670192867 0.039296893 0.751371585 84.41234458 3.438310288 20.95787017 2.837177216 9.55E-12 11.01990801 1.087915968 (ac)VT(ph)VMPLEMEK ddPTM_K562_Paclitaxel_30min_R1 1 VTVMPLEMEK 10 0 Q7Z3G6 Q7Z3G6 PRICKLE2 Prickle-like protein 2 1 VT(1)VMPLEMEK 43.651 0.019187 0 2085.1 1973.7 2638.2 2273.8 2191 2339.8 1497.4 1609.6 1024.4 1437.3 TRUE FALSE 2114.297833 2189.195241 1972.153781 2127.968645 2489.451294 2754.730678 1781.523833 1472.854433 1122.798197 1144.377471 1.847552828 1.913000995 1.723342019 1.859498897 2.175376007 2.407187093 1.556762413 1.287035502 0.98114322 1 10.16034729 -8.187815001 2.45330631 1.049374401 1.973047701 0.802444087 0.199311583 0.14210182 1.648134746 0.134245734 0.06275966 6.49E-09 8.187815001 0.9236733 (ac)VTSGLGSGGVRR ddPTM_K562_Paclitaxel_30min_R1 2 VTSGLGSGGVRR 12 1 A0A0D9SFG0;Q6UX15-3 A0A0D9SFG0 LAYN 0 ; 70.256 0.022829 10013700 300.427 68.794 177 391.8 191.831 297.88 258.16 165.53 174.91 259.32 FALSE TRUE 304.6339049 76.30516157 132.3141609 366.6717016 217.9616299 350.7048356 307.1445123 151.4671933 191.710887 206.4704417 1.475435914 0.369569421 0.640838271 1.775904089 1.055655367 1.698571634 1.48759556 0.733602312 0.928514927 1 7.68979145 -4.951326773 22.31548404 1.097291966 6.088303931 0.06882797 0.43408223 2718.427619 1264563.824 0.11128979 9423.635421 1.12E-05 4.951326773 4.991011964 AAAAAAAATMALAAPSSPT(ph)PES(ph)PTMLTK ddPTM_K562_Paclitaxel_30min_R1 1 AAAAAAAATMALAAPSSPTPESPTMLTK 28 0 Q9NQS7;Q9NQS7-2;E9PM67 Q9NQS7 INCENP Inner centromere protein 2 AAAAAAAATMALAAPS(0.314)S(0.314)PT(0.396)PES(0.406)PT(0.5)MLT(0.07)K 107.17 4.36E-09 9630000 3365.6 3035.5 5209.5 3732.8 2573.2 3115.5 2755.9 3781.6 3338.1 4314.2 TRUE FALSE 3412.728784 3366.926155 3894.297295 3493.394915 2923.713405 3667.990181 3278.817638 3460.329476 3658.73942 3434.963672 0.993526893 0.980192653 1.133722993 1.017010731 0.851162831 1.067839585 0.954542159 1.007384592 1.065146467 1 11.74607913 -11.57268625 15.52829833 0.999999999 1.006571831 0.000797904 0.071544986 3.77E-09 1.34E-10 0.069629387 0.016887603 2.67E-12 11.57268625 0.006571833 AAAAAATAPPS(ph)PGPAQPGPR ddPTM_K562_Paclitaxel_30min_R1 4 AAAAAATAPPSPGPAQPGPR 20 0 Q6SPF0 Q6SPF0 SAMD1 Atherin 1 AAAAAATAPPS(1)PGPAQPGPR;AAAAAATAPPS(1)PGPAQPGPR;AAAAAAT(0.008)APPS(0.992)PGPAQPGPR;AAAAAAT(0.033)APPS(0.967)PGPAQPGPR 261.66 1.31E-101 952520000 24289.4 22212.39 27826.1 24358.1 21644.63 21412 21453.11 24666.8 22364.7 25997 TRUE FALSE 24629.52654 24637.61386 20801.05691 22795.88049 24592.99505 25209.11756 25523.72563 22571.20137 24512.92936 20698.79713 1.189901345 1.190292059 1.004940373 1.101314262 1.188136436 1.217902538 1.233101879 1.090459568 1.184268304 1 14.33725931 -11.14530301 4.016742294 0.999944055 1.153738159 0.330524372 0.066383875 26598608.98 1.557145419 13951.84555 0.017250143 7.16E-12 11.14530301 0.153794104 AAAAAWEEPSS(ph)GNGTAR ddPTM_K562_Paclitaxel_30min_R1 2 AAAAAWEEPSSGNGTAR 17 0 Q9P258 Q9P258 RCC2 Protein RCC2 1 AAAAAWEEPS(0.2)S(0.798)GNGT(0.002)AR;AAAAAWEEPS(0.039)S(0.959)GNGT(0.002)AR 147.75 3.97E-08 29208000 4744.3 4634.6 5525.7 4819 3998.9 3941.6 4561.4 6147.2 5352.1 6412.8 TRUE FALSE 4810.734837 5140.621301 4130.668694 4509.930909 4543.617882 4640.587417 5426.901838 5624.95699 5866.193119 5105.86784 0.942197289 1.006806573 0.809004233 0.88328391 0.889881608 0.908873391 1.062875501 1.101665215 1.148912056 1 12.31794048 -7.799103523 4.095742113 1.091679798 0.90390985 0.678334336 0.057924166 0.125482437 4.509756282 0.025684887 0.017527895 1.59E-08 7.799103523 -0.187769948 AAAAGLGHPAS(ph)PGGS(ph)EDGPPGS(ph)EEEDAAR ddPTM_K562_Paclitaxel_30min_R1 2 AAAAGLGHPASPGGSEDGPPGSEEEDAAR 29 0 Q99856 Q99856 ARID3A AT-rich interactive domain-containing protein 3A 3 AAAAGLGHPAS(1)PGGS(1)EDGPPGS(1)EEEDAAR;AAAAGLGHPAS(1)PGGS(1)EDGPPGS(1)EEEDAAR 77.123 0.00015437 105379000 4543.6 3756.5 7040.7 5481.6 4757.6 4259.6 4088.1 5213.2 4949.2 5986.8 TRUE FALSE 4607.224418 4166.647374 5263.188207 5130.034711 5405.665667 5014.980252 4863.795634 4770.30612 5424.592774 4766.686874 0.96654648 0.874118121 1.104160677 1.076226496 1.134050927 1.052089299 1.020372381 1.000759279 1.138021632 1 12.21877114 -5.763463125 24.99995176 1.066447879 0.920332283 0.560223473 0.051518745 34.72972711 429051.5123 0.013386601 0.030294323 1.72E-06 5.763463125 -0.146115597 AAAAGLGHPAS(ph)PGGSEDGPPGS(ph)EEEDAAR ddPTM_K562_Paclitaxel_30min_R1 4 AAAAGLGHPASPGGSEDGPPGSEEEDAAR 29 0 Q99856 Q99856 ARID3A AT-rich interactive domain-containing protein 3A 2 AAAAGLGHPAS(0.997)PGGS(0.175)EDGPPGS(0.828)EEEDAAR;AAAAGLGHPAS(0.998)PGGS(0.002)EDGPPGS(1)EEEDAAR;AAAAGLGHPAS(0.999)PGGS(0.001)EDGPPGS(1)EEEDAAR;AAAAGLGHPAS(0.995)PGGS(0.005)EDGPPGS(1)EEEDAAR 122.99 2.94E-14 138828000 5713.49 5584.67 8674.16 7273.3 6660.95 5706.55 5566.06 7088.71 4948.38 7933.53 TRUE FALSE 5793.496488 6194.423157 6484.261027 6806.823092 7568.284161 6718.526519 6622.190828 6486.479839 5423.694009 6316.672231 0.917175417 0.980646602 1.026531184 1.077596374 1.198144194 1.063618037 1.048367018 1.026882447 0.858631541 1 12.624949 -8.614300211 7.200134585 0.930508187 1.048512728 0.269396382 0.074716767 0.310180676 20.67847675 0.055494535 0.020595401 2.43E-09 8.614300211 0.118004541 AAAAGLGHPAS(ph)PGGSEDGPPGS(ph)EEEDAAREGTPGS(ph)PGRGR ddPTM_K562_Paclitaxel_30min_R1 1 AAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGR 40 2 Q99856 Q99856 ARID3A AT-rich interactive domain-containing protein 3A 3 AAAAGLGHPAS(0.826)PGGS(0.256)EDGPPGS(0.847)EEEDAAREGT(0.306)PGS(0.765)PGRGR 46.43 0.0026178 16636000 1760 1568.1 1750.2 1697.9 1157.6 1297 1074.1 1279.9 3132.2 1640.2 TRUE FALSE 1784.64543 1739.310461 1308.340364 1589.004294 1315.284718 1527.004739 1277.904868 1171.164506 3433.061805 1305.92634 1.366574343 1.331859545 1.001848515 1.216764105 1.007166085 1.169288568 0.978542839 0.896807477 2.628832654 1 10.35085781 -8.717653077 24.99999987 1.814434626 1.120400596 0.332989303 0.39249697 120.1732078 68613.52616 0.241414919 0.091245071 1.92E-09 8.717653077 -0.69403403 AAAAGLGHPAS(ph)PGGSEDGPPGS(ph)EEEDAAREGTPGSPGRGR ddPTM_K562_Paclitaxel_30min_R1 1 AAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGR 40 2 Q99856 Q99856 ARID3A AT-rich interactive domain-containing protein 3A 2 AAAAGLGHPAS(0.561)PGGS(0.561)EDGPPGS(0.858)EEEDAAREGT(0.014)PGS(0.006)PGRGR 46.872 0.0018546 17630000 817.21 843.45 1180.6 1067.8 924.19 642.3 662.51 1099 1802 922.24 TRUE FALSE 828.6534613 935.5407234 882.5429285 999.3160873 1050.080325 756.2028867 788.217814 1005.63309 1975.090152 734.2869818 1.128514439 1.274080498 1.201904637 1.360933956 1.430068013 1.029846512 1.073446532 1.369536864 2.689806847 1 9.520200212 -8.545422567 24.98047792 1.906493437 1.222721321 0.280313942 0.396085259 251.44109 278612.6585 0.242527004 0.091679546 2.85E-09 8.545422567 -0.683772115 AAAAGLGHPAS(ph)PGGSEDGPPGSEEEDAAR ddPTM_K562_Paclitaxel_30min_R1 1 AAAAGLGHPASPGGSEDGPPGSEEEDAAR 29 0 Q99856 Q99856 ARID3A AT-rich interactive domain-containing protein 3A 1 AAAAGLGHPAS(0.998)PGGS(0.002)EDGPPGSEEEDAAR 169.41 3.81E-36 37841000 1902.4 1754.8 2690.2 2212.9 1725 1756.2 1596.6 1880.2 1336.5 2520.9 TRUE FALSE 1929.039469 1946.394998 2011.025738 2070.974499 1959.974204 2067.637412 1899.546515 1720.465274 1464.876797 2007.139196 0.961089033 0.969735932 1.001936359 1.031804123 0.976501385 1.030141515 0.946395008 0.857172874 0.729833187 1 10.97092496 -8.155098051 3.275411721 0.843855836 0.994745724 0.445641273 0.065176194 0.201489724 4.054332003 0.033190031 0.017401677 7.00E-09 8.155098051 0.150889888 AAAAGLGHPAS(ph)PGGSEDGPPGSEEEDAAREGTPGS(ph)PGRGR ddPTM_K562_Paclitaxel_30min_R1 1 AAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGR 40 2 Q99856 Q99856 ARID3A AT-rich interactive domain-containing protein 3A 2 AAAAGLGHPAS(0.876)PGGS(0.18)EDGPPGS(0.259)EEEDAAREGT(0.209)PGS(0.476)PGRGR 43.376 0.0046814 24045000 1874.2 1648.9 2414.7 1922 1517 2016 1413.2 1358.8 3661 1757.3 TRUE FALSE 1900.444582 1828.932478 1805.07912 1798.731523 1723.641083 2373.509294 1681.347323 1243.361459 4012.655408 1399.161295 1.358274124 1.30716343 1.290115104 1.285578388 1.231910208 1.69638004 1.201682271 0.888647694 2.867900521 1 10.45034657 AAAAGLGHPASPGGSEDGPPGS(ph)EEEDAAR ddPTM_K562_Paclitaxel_30min_R1 4 AAAAGLGHPASPGGSEDGPPGSEEEDAAR 29 0 Q99856 Q99856 ARID3A AT-rich interactive domain-containing protein 3A 1 AAAAGLGHPASPGGSEDGPPGS(1)EEEDAAR;AAAAGLGHPASPGGSEDGPPGS(1)EEEDAAR;AAAAGLGHPASPGGSEDGPPGS(1)EEEDAAR;AAAAGLGHPASPGGSEDGPPGS(1)EEEDAAR 171.99 2.00E-37 103060000 8335.9 8077.2 10012.5 9331 7878.5 7338.4 7095.5 9364.3 5763.1 9390.6 TRUE FALSE 8452.628318 8959.096011 7484.720542 8732.551424 8951.685084 8639.762204 8441.834084 8568.744265 6316.671505 7476.790565 1.130515593 1.198254242 1.001060612 1.167954532 1.197263051 1.155544231 1.129071894 1.146045779 0.844837293 1 12.86820341 -8.749470716 24.99942441 0.922418661 1.140875976 0.65998646 0.062673492 109.5332298 228789.5382 0.041955053 0.015587404 1.78E-09 8.749470716 0.218457315 AAAAGLGHPASPGGSEDGPPGS(ph)EEEDAAREGTPGSPGR ddPTM_K562_Paclitaxel_30min_R1 1 AAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGR 38 1 Q99856 Q99856 ARID3A AT-rich interactive domain-containing protein 3A 1 AAAAGLGHPAS(0.002)PGGS(0.043)EDGPPGS(0.582)EEEDAAREGT(0.272)PGS(0.102)PGR 48.291 0.001704 31837000 1091.9 1066.8 1488 1173.6 969.15 962.24 861.94 949.07 903.86 1119 TRUE FALSE 1107.189969 1183.276832 1112.335997 1098.330549 1101.164638 1132.879753 1025.488615 868.4405796 990.6797916 890.9471858 1.242711113 1.328111083 1.24848702 1.232767291 1.235948276 1.271545353 1.151009433 0.974738563 1.111939975 1 9.799196103 -7.991872393 3.415607309 1.033427025 1.259743099 0.8568647 0.042275024 0.082591405 2.030734183 0.019977365 0.011905513 1.02E-08 7.991872393 0.226316074 AAAAGLGHPASPGGSEDGPPGS(ph)EEEDAAREGTPGSPGRGR ddPTM_K562_Paclitaxel_30min_R1 1 AAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGR 40 2 Q99856 Q99856 ARID3A AT-rich interactive domain-containing protein 3A 1 AAAAGLGHPASPGGS(0.001)EDGPPGS(0.403)EEEDAAREGT(0.403)PGS(0.192)PGRGR 81.489 5.80E-11 20903000 791.55 838.87 944.77 1052.4 569.43 765.35 652.64 870.43 1594.5 815.54 TRUE FALSE 802.6341421 930.4606635 706.2511287 984.9037744 646.9960065 901.0740765 776.475033 796.4815384 1747.658849 649.3325003 1.236091127 1.432949472 1.087657138 1.516794206 0.996401699 1.387692863 1.195804973 1.226615852 2.691469853 1 9.342813611 AAAAGLGHPASPGGSEDGPPGSEEEDAAREGT(ph)PGSPGRGR ddPTM_K562_Paclitaxel_30min_R1 1 AAAAGLGHPASPGGSEDGPPGSEEEDAAREGTPGSPGRGR 40 2 Q99856 Q99856 ARID3A AT-rich interactive domain-containing protein 3A 1 AAAAGLGHPASPGGS(0.004)EDGPPGS(0.179)EEEDAAREGT(0.409)PGS(0.409)PGRGR 67.353 5.51E-06 17150000 1180.6 859.65 1072.3 926.63 788.42 1007.4 812.92 885.9 1844.3 1195 TRUE FALSE 1197.132042 953.5094941 801.584603 867.2000992 895.8161521 1186.048245 967.1673263 810.6372654 2021.453256 951.4583441 1.258207519 1.002155796 0.842479976 0.911443054 0.941519046 1.246558247 1.016510426 0.851994489 2.124584085 1 9.893996685 -8.728871962 24.99996429 1.562295255 1.005775633 0.374749499 0.285922038 157.1230182 120613.8976 0.178468058 0.067443873 1.87E-09 8.728871962 -0.556519622 AAAAPGAS(ph)PSPGGDAAWSEAGPGPRPLAR ddPTM_K562_Paclitaxel_30min_R1 1 AAAAPGASPSPGGDAAWSEAGPGPRPLAR 29 1 F8WAX8;P52701-2;P52701;F8W7G9;P52701-3 F8WAX8 MSH6 DNA mismatch repair protein Msh6 1 AAAAPGAS(0.5)PS(0.5)PGGDAAWSEAGPGPRPLAR 120.31 7.66E-13 640010000 1858.3 1522.2 2072.8 1878.1 1482 1793.2 1467 1771.8 1833.2 1695 TRUE FALSE 1884.321933 1688.398944 1549.496004 1757.647072 1683.87349 2111.198842 1745.355592 1621.274531 2009.287051 1349.55807 1.396251096 1.251075431 1.148150672 1.302387138 1.247722146 1.564363098 1.293279356 1.201337362 1.488848162 1 10.39827134 -11.16869199 5.021512032 0.999978961 1.31436937 0.3830509 0.122100597 2.90E-05 4.80E-06 0.119162669 0.02889926 6.78E-12 11.16869199 0.314390409 AAAAPGASPS(ph)PGGDAAWSEAGPGPRPLAR ddPTM_K562_Paclitaxel_30min_R1 3 AAAAPGASPSPGGDAAWSEAGPGPRPLAR 29 1 F8WAX8;P52701-2;P52701;F8W7G9;P52701-3 F8WAX8 MSH6 DNA mismatch repair protein Msh6 1 AAAAPGAS(0.236)PS(0.763)PGGDAAWS(0.001)EAGPGPRPLAR;AAAAPGAS(0.2)PS(0.8)PGGDAAWSEAGPGPRPLAR;AAAAPGAS(0.217)PS(0.777)PGGDAAWS(0.006)EAGPGPRPLAR 89.186 1.38E-06 723583000 4397.3 4175.1 5897.8 5006.4 4294.3 3589 3694.73 4671.1 4335.3 4890.9 TRUE FALSE 4458.875767 4630.951537 4408.827447 4685.311912 4879.256363 4225.458758 4395.78573 4274.260899 4751.724936 3894.131895 1.145024331 1.189212811 1.13217209 1.203172373 1.252976657 1.085083626 1.128823021 1.097615852 1.220227014 1 11.92708603 -7.285466347 24.95502168 1.113855463 1.182901794 0.299921341 0.059129491 1113.594768 1156603.697 0.020211695 0.017835099 5.18E-08 7.285466347 0.069046331 AAAPPQPS(ph)PPPTK ddPTM_K562_Paclitaxel_30min_R1 1 AAAPPQPSPPPTK 13 0 J3KR72;P49848-4;P49848-2;P49848;P49848-3 J3KR72 TAF6 Transcription initiation factor TFIID subunit 6 1 AAAPPQPS(0.984)PPPT(0.016)K 101.75 0.0077359 14778000 3574.4 3122.4 5952.1 3586 3397.7 2974.2 2597.9 3986.8 2935.2 4711 TRUE FALSE 3624.452628 3463.314191 4449.41874 3356.01001 3860.524264 3501.63261 3090.837963 3648.096455 3217.139075 3750.895614 0.966289921 0.923329932 1.186228357 0.894722316 1.029227326 0.933545737 0.824026654 0.972593436 0.857698909 1 11.8730194 -7.420384903 5.431276119 0.907130299 0.999649186 0.183216335 0.087162376 0.371912601 16.06308701 0.030259756 0.026412019 3.80E-08 7.420384903 0.092518887 AAARLS(ph)LTDPLVAER ddPTM_K562_Paclitaxel_30min_R1 4 AAARLSLTDPLVAER 15 1 P13224;P13224-2 P13224 GP1BB Platelet glycoprotein Ib beta chain 1 AAARLS(0.983)LT(0.017)DPLVAER;AAARLS(0.923)LT(0.077)DPLVAER;AAARLS(0.988)LT(0.012)DPLVAER;AAARLS(0.952)LT(0.048)DPLVAER 119.04 0.0024431 808179000 17068.6 16158.2 19252.6 18901.3 15867.7 16488.2 16633.7 18659.6 17191.4 20526.5 TRUE FALSE 17307.61306 17922.40692 14392.04302 17689.05522 18029.14938 19412.15076 19789.85774 17074.35051 18842.71078 16343.18803 1.059010826 1.09662857 0.880614173 1.082350346 1.103159882 1.187782379 1.210893352 1.044738057 1.152939729 1 13.99640181 -6.512603178 20.93453245 1.123975815 1.014029502 0.260019695 0.078225538 73.52895937 149800.9928 0.022607488 0.031189881 3.07E-07 6.512603178 -0.109946313 AAASMGDTLSEQQLGDSDIPVIVY(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 AAASMGDTLSEQQLGDSDIPVIVYR 25 0 Q96P48-3;Q96P48;F8WBT0;A0A0A0MSJ2;E7EU13;Q96P48-5;Q96P48-7;Q96P48-2;Q96P48-4;Q96P48-1 Q96P48-3 ARAP1 "Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1" 1 AAASMGDTLSEQQLGDSDIPVIVY(1)R;AAASMGDTLSEQQLGDSDIPVIVY(1)R 171.29 5.21E-62 7567100 966.45 1126.52 1131.9 1037.93 943.79 830.01 950.91 1077.2 1037.76 1636.65 TRUE FALSE 979.9832818 1249.517263 846.1378458 971.3618154 1072.350176 977.2006196 1131.340208 985.6851363 1137.441485 1303.099832 0.752040065 0.958880688 0.649326955 0.745423944 0.822922504 0.749904647 0.868191508 0.756415673 0.872873633 1 10.3477319 -9.046242403 3.847416228 0.999860662 0.790489698 0.411281442 0.078631219 0.234718704 9.651355146 0.073604119 0.019375952 8.99E-10 9.046242403 -0.209370964 AAASPPT(ph)PIR ddPTM_K562_Paclitaxel_30min_R1 1 AAASPPTPIR 10 0 Q6PGN9-4;Q5T2Z1;Q6PGN9-2 Q6PGN9-4 PSRC1 1 AAAS(0.144)PPT(0.856)PIR 105.46 0.015875 47061000 3143.5 3279.7 4450.2 3727 3353.7 2816.2 3061.1 3944.5 3191.2 3861.6 TRUE FALSE 3187.518699 3637.788737 3326.691971 3487.966901 3810.530719 3315.613529 3641.927745 3609.390104 3497.729019 3074.6038 1.036725024 1.183173174 1.081990457 1.134444347 1.239356667 1.078387247 1.184519366 1.173936656 1.137619429 1 11.5861848 -5.245941225 23.45623054 1.141653647 1.03672484 0.164545294 0.064688295 1940.0439 2936115.083 0.014976992 0.322425234 5.68E-06 5.245941225 -0.104928808 AAAYDIS(ph)EDEED ddPTM_K562_Paclitaxel_30min_R1 1 AAAYDISEDEED 12 0 P49585 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 AAAYDIS(1)EDEED 90.685 0.017722 30965000 4505.7 3961.3 5609.2 4330.8 3968.9 3970.3 3851.5 5087.9 3613.6 5064.8 TRUE FALSE 4568.793701 4393.80813 4193.088086 4053.041872 4509.531374 4674.376959 4582.302019 4655.651137 3960.702426 4032.59098 1.132967297 1.089574458 1.039799996 1.005071403 1.118271453 1.159149783 1.136317083 1.154506163 0.98217311 1 11.97749137 -8.775955173 24.99936075 0.991086438 1.101838569 0.482378474 0.046912944 267.5351891 460740.1287 0.050441868 0.01325983 1.68E-09 8.775955173 0.110752131 AADAEAEVASLNRR ddPTM_K562_Paclitaxel_30min_R1 2 AADAEAEVASLNRR 14 1 A0A494C0P6;J3KN67;A0A2R2Y2Q3;P06753 A0A494C0P6 TPM3 Tropomyosin alpha-3 chain 0 ; 109.6 0.0052014 30006000 1853.33 1611.29 2334.1 2403.2 2106.23 1990.98 1769.92 2631.4 2424 2588.8 FALSE TRUE 1879.282338 1787.216091 1744.827587 2249.069508 2393.134185 2344.052348 2105.75308 2407.846145 2656.836031 2061.201139 0.911741364 0.867075055 0.846510102 1.091145093 1.161038649 1.137226399 1.021614553 1.168176215 1.288974657 1 11.00926958 -6.328984754 4.580896557 1.131851064 0.873919461 0.687993113 0.076992752 0.120465257 4.964901274 0.022220338 0.034171651 4.69E-07 6.328984754 -0.257931603 AADALVAGAISNGGLY(ph)VK ddPTM_K562_Paclitaxel_30min_R1 1 AADALVAGAISNGGLYVK 18 0 Q3MIX3 Q3MIX3 ADCK5 Uncharacterized aarF domain-containing protein kinase 5 1 AADALVAGAISNGGLY(1)VK 53.981 0.024323 6837900 722.63 659.74 928.6 703.71 760.82 537.79 609.71 738.98 633.1 811.31 TRUE FALSE 732.7490495 731.7726443 694.1634452 658.5771903 864.4565648 633.1595056 725.3992896 676.1990364 693.9120838 645.9645767 1.134348656 1.13283711 1.074615343 1.01952524 1.338241439 0.980176821 1.122970695 1.046805136 1.074226217 1 9.335311243 -8.692215937 0.68681234 1.004474559 1.12137943 0.145714376 0.089581073 1.360937216 1.436939632 0.084999693 0.036964972 2.03E-09 8.692215937 0.116904871 AADEEAFEDNSEEYIRR ddPTM_K562_Paclitaxel_30min_R1 1 AADEEAFEDNSEEYIRR 17 1 P55060-4;P55060-3;P55060 P55060-4 CSE1L Exportin-2 0 88.311 0.011638 52719000 920.28 1080.6 955.53 1028 846.21 839.33 887.31 1017.4 1134.1 871.12 FALSE TRUE 933.1667593 1198.583562 714.2946337 962.0686812 961.4781285 988.1733907 1055.67244 930.9655196 1243.035372 693.5852658 1.345424716 1.728098363 1.029858431 1.387095039 1.386243589 1.424732386 1.522051422 1.342251004 1.792188262 1 9.437929441 -7.298237302 3.55710385 1.445831617 1.37553555 0.000302667 0.240892053 1.448221908 38.56748926 0.084715637 0.076760334 5.03E-08 7.298237302 -0.070296068 AADIS(ph)LDNLVEGK ddPTM_K562_Paclitaxel_30min_R1 3 AADISLDNLVEGK 13 0 A6NNK5;Q12888;Q12888-3;Q12888-2;H7BZY0 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 AADIS(1)LDNLVEGK;AADIS(1)LDNLVEGK;AADIS(1)LDNLVEGK 150.76 4.11E-05 23737300 5850.5 5337.41 9142.8 5965.1 4289.73 3816.58 4216.71 6175.5 6285.2 7832.8 TRUE FALSE 5932.42505 5920.166474 6834.587063 5582.525185 4874.063852 4493.396876 5016.80871 5650.852729 6888.921543 6236.47106 0.951247106 0.949281479 1.095906162 0.89514168 0.781541966 0.720503123 0.804430689 0.906097803 1.104618538 1 12.60651419 -6.499697593 23.12265179 0.866331439 0.994136195 0.161659705 0.110781221 489.6086141 488371.7776 0.033318276 0.048963317 3.16E-07 6.499697593 0.127804756 AADIS(ph)LDNLVEGKR ddPTM_K562_Paclitaxel_30min_R1 1 AADISLDNLVEGKR 14 1 A6NNK5;Q12888;Q12888-3;Q12888-2;H7BZY0 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 AADIS(1)LDNLVEGKR 94.639 0.0065245 9147700 2002 1275.2 2242.4 1739.7 1660.1 1217 1194 1811.6 2253.2 2119.2 TRUE FALSE 2030.034177 1414.430648 1676.278386 1628.123429 1886.233726 1432.817862 1420.555267 1657.693272 2469.629928 1687.305877 1.203121618 0.838277557 0.993464439 0.964924885 1.117896732 0.849174938 0.841907378 0.982449771 1.463652774 1 10.72050582 -8.62454486 11.39694812 1.231297753 0.964820152 0.312826997 0.152652896 0.437647796 46.00456115 0.096917358 0.036565606 2.37E-09 8.62454486 -0.266477601 AADPPAENS(ph)SAPEAEQGGAE ddPTM_K562_Paclitaxel_30min_R1 1 AADPPAENSSAPEAEQGGAE 20 0 P67809;H0Y449 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 AADPPAENS(0.9)S(0.1)APEAEQGGAE 167.29 9.75E-13 143570000 4420 4673.8 5584.7 5031.5 4531.7 4134.4 3965.1 4924.7 5083.2 5028.3 TRUE FALSE 4481.893637 5184.10129 4174.773414 4708.80211 5148.994262 4867.57779 4717.457026 4506.315996 5571.464072 4003.5297 1.119485547 1.294882686 1.042773184 1.176162652 1.286113667 1.215821576 1.178324474 1.125585754 1.391638002 1 11.96705679 AADPPAENSS(ph)APEAEQGGAE ddPTM_K562_Paclitaxel_30min_R1 2 AADPPAENSSAPEAEQGGAE 20 0 P67809;H0Y449 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 AADPPAENS(0.036)S(0.964)APEAEQGGAE;AADPPAENS(0.385)S(0.615)APEAEQGGAE 163.9 1.81E-12 146650000 8995.2 8015.7 11706.3 10408.9 8966.6 8163.1 8613.4 10328.6 9439.2 10591.3 TRUE FALSE 9121.160553 8890.881233 8750.899783 9741.319743 10188.00273 9610.711169 10247.74769 9451.120961 10345.87734 8432.787246 1.081630579 1.054322963 1.037723297 1.155172004 1.208141796 1.139683818 1.215226637 1.120758853 1.226863317 1 13.04179384 -6.272533667 20.24904996 1.161723023 1.057535356 0.318905227 0.062132968 54.22828186 98977.23786 0.016014566 0.02414682 5.34E-07 6.272533667 -0.104187667 AADRLPNLS(ph)SPSAEGPPGPPSGPAPR ddPTM_K562_Paclitaxel_30min_R1 1 AADRLPNLSSPSAEGPPGPPSGPAPR 26 1 O60784-3;O60784-4;O60784;O60784-2 O60784-3 TOM1 Target of Myb protein 1 1 AADRLPNLS(0.59)S(0.407)PS(0.003)AEGPPGPPSGPAPR 114.24 2.09E-08 71647000 248.7 290.15 382.18 206.12 401.17 339.87 130.19 361.84 368.17 749.33 TRUE FALSE 252.1825673 321.8295582 285.6939323 192.9003858 455.8161459 400.1411725 154.8928729 331.0994335 403.5343735 596.6161347 0.422688145 0.539424832 0.478857201 0.323324118 0.764002378 0.670684464 0.259618981 0.554962252 0.676371875 1 9.220659184 -9.09005133 2.244214523 0.99842152 0.501709246 0.542363761 0.140659649 0.329659902 3.626176441 0.138779547 0.038125872 8.13E-10 9.09005133 -0.496712274 AADRLPNLSS(ph)PSAEGPPGPPSGPAPR ddPTM_K562_Paclitaxel_30min_R1 1 AADRLPNLSSPSAEGPPGPPSGPAPR 26 1 O60784-3;O60784-4;O60784;O60784-2 O60784-3 TOM1 Target of Myb protein 1 1 AADRLPNLS(0.259)S(0.714)PS(0.027)AEGPPGPPSGPAPR 70.424 0.00063828 73163000 350.19 304.95 626.03 282.95 109.31 298.22 263.83 529.43 382.62 421.65 TRUE FALSE 355.0937404 338.2454723 467.9809839 264.8028534 124.1998726 351.1051298 313.8903652 484.4516169 419.3723606 335.7174986 1.057715913 1.007530062 1.393972569 0.788766908 0.369953527 1.045835059 0.934983629 1.443033559 1.249182311 1 8.391103926 -8.237561116 23.03597279 1.259580907 0.938551116 0.20041604 0.26168176 436.7069188 421303.1346 0.132272353 0.076288194 5.79E-09 8.237561116 -0.321029791 AADS(ph)DDGAVSAPAASDGGVSK ddPTM_K562_Paclitaxel_30min_R1 1 AADSDDGAVSAPAASDGGVSK 21 0 Q96GM8 Q96GM8 TOE1 Target of EGR1 protein 1 1 AADS(1)DDGAVSAPAASDGGVSK 180.04 2.03E-22 83920000 3314 3028.5 5203.7 3234.8 2554.2 2219.6 1880.1 3839.4 3333.4 3867.2 TRUE FALSE 3360.406225 3359.161872 3889.961576 3027.334406 2902.125283 2613.214895 2236.83916 3513.219005 3653.587964 3079.062517 1.091373171 1.090969038 1.263359076 0.983200045 0.942535355 0.848704721 0.726467601 1.141002817 1.18659103 1 11.58827544 -6.398630626 7.442854603 0.962696101 1.142239671 0.264454334 0.131321501 0.382531146 21.52895087 0.040648094 0.060392708 3.99E-07 6.398630626 0.179543571 AAEAGGAEEQYGFLT(ph)TPTK ddPTM_K562_Paclitaxel_30min_R1 3 AAEAGGAEEQYGFLTTPTK 19 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 AAEAGGAEEQYGFLT(0.464)T(0.464)PT(0.072)K;AAEAGGAEEQYGFLT(0.895)T(0.105)PTK;AAEAGGAEEQYGFLT(0.497)T(0.497)PT(0.007)K 171.29 2.66E-13 103097000 8017.4 6328.2 12444.4 8120.5 7043.2 5689.6 5900.7 8613.7 6438.6 10968.8 TRUE FALSE 8129.668336 7019.134277 9302.65731 7599.687476 8002.603082 6698.570674 7020.327021 7881.91242 7057.056298 8733.352539 0.930876007 0.803715898 1.065187426 0.870191309 0.916326582 0.767010222 0.803852471 0.902507071 0.808058104 1 13.09231986 -7.093299418 24.99999988 0.846331795 0.916590861 0.106880657 0.085737706 115.3703103 30906.98403 0.027267137 0.027267145 8.07E-08 7.093299418 0.070259066 AAEAGGAEEQYGFLTT(ph)PTK ddPTM_K562_Paclitaxel_30min_R1 1 AAEAGGAEEQYGFLTTPTK 19 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 AAEAGGAEEQYGFLT(0.07)T(0.926)PT(0.004)K 169.06 3.58E-12 18764000 1553 1308.3 2810.8 1498.3 1382.3 1149.9 1236.4 1928.3 951.87 2422.7 TRUE FALSE 1574.746791 1451.144618 2101.178776 1402.205744 1570.592663 1353.81862 1471.000446 1764.478879 1043.301367 1928.95241 0.816374102 0.752296744 1.089284922 0.726926044 0.814220535 0.701841379 0.762590325 0.914734272 0.540864233 1 10.91360184 AAEEAFVNDIDES(ph)SPGTEWER ddPTM_K562_Paclitaxel_30min_R1 1 AAEEAFVNDIDESSPGTEWER 21 0 P09496-5;P09496-2 P09496-5 CLTA Clathrin light chain A 1 AAEEAFVNDIDES(0.564)S(0.324)PGT(0.112)EWER 137.58 7.02E-12 3777500 1437.5 1273.9 2042.9 1489.3 1363.3 1593.7 1275.2 1505.1 1976.4 1642.8 TRUE FALSE 1457.629435 1412.98871 1527.144629 1393.782964 1549.004541 1876.320318 1517.162543 1377.23236 2166.242051 1307.996458 1.11439861 1.080269523 1.167544927 1.065586191 1.184257443 1.434499541 1.159913342 1.05293279 1.656152841 1 10.35314292 -7.001544429 23.09078911 1.26344991 1.111315909 0.143135641 0.177240795 44.26229101 661817.8269 0.05320091 0.059350732 9.96E-08 7.001544429 -0.152134001 AAEEAFVNDIDESS(ph)PGTEWER ddPTM_K562_Paclitaxel_30min_R1 1 AAEEAFVNDIDESSPGTEWER 21 0 P09496-5;P09496-2 P09496-5 CLTA Clathrin light chain A 1 AAEEAFVNDIDES(0.08)S(0.87)PGT(0.05)EWER 151.6 6.76E-18 4352800 1421.3 1513.4 2065.8 1869.7 1606.7 1637.6 1476.1 1914.7 1856.3 1858.7 TRUE FALSE 1441.202585 1678.63813 1544.263241 1749.78581 1825.559742 1928.005367 1756.182269 1752.034284 2034.605909 1479.89592 0.973854016 1.134294721 1.043494492 1.182370859 1.233573062 1.302797948 1.186693095 1.183890205 1.374830407 1 10.53128 -6.377614545 3.233857196 1.225365565 1.057515007 0.353253233 0.097901838 0.265933836 5.226855003 0.027184531 0.042827843 4.19E-07 6.377614545 -0.167850558 AAESLTAIPEPAS(ph)PQLLETPIHASQIQK ddPTM_K562_Paclitaxel_30min_R1 2 AAESLTAIPEPASPQLLETPIHASQIQK 28 0 Q14676;Q14676-3;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 AAESLTAIPEPAS(1)PQLLETPIHASQIQK;AAESLTAIPEPAS(1)PQLLETPIHASQIQK 120.8 9.39E-13 100742000 2538.6 2675.6 5484.7 4026.3 3031.3 2929.3 2422.6 3218.3 3324.8 4442.9 TRUE FALSE 2574.148232 2967.731056 4100.019651 3768.071139 3444.21438 3448.770226 2882.275703 2944.885327 3644.161896 3537.434541 0.727687877 0.838950098 1.159037603 1.065198831 0.973647523 0.974935419 0.814792661 0.832491822 1.030170835 1 11.78848774 -10.50951108 16.18350196 0.999986647 0.938523293 0.022960978 0.125120108 0 0 0.130222431 0.031583579 3.09E-11 10.50951108 -0.061463354 AAFTTPDHAPLS(ph)PQSSVASSGSEQTEEQGSSR ddPTM_K562_Paclitaxel_30min_R1 2 AAFTTPDHAPLSPQSSVASSGSEQTEEQGSSR 32 0 M0QZ22;Q5PRF9;A0A087WZT0;M0R0X3 M0QZ22 SAMD4B Protein Smaug homolog 2 1 AAFTTPDHAPLS(0.476)PQS(0.421)S(0.091)VAS(0.012)S(0.001)GSEQTEEQGSSR;AAFTT(0.001)PDHAPLS(0.881)PQS(0.086)S(0.026)VAS(0.003)S(0.001)GSEQTEEQGSSR 99.29 5.94E-12 165722000 2620.1 3460.2 3971.6 3034.3 2847 3235.6 2574.3 3236.8 2894.4 3649.4 TRUE FALSE 2656.789484 3837.996338 2968.92046 2839.693579 3234.8096 3809.38823 3062.759986 2961.813637 3172.420053 2905.650277 0.914352806 1.320873461 1.021774879 0.977300538 1.113282499 1.311027779 1.054070413 1.019329016 1.091810697 1 11.50464536 -7.973512713 24.99995701 1.040681548 1.115590197 0.068146273 0.123890812 626.6631067 591473.3169 0.051970154 0.035037389 1.06E-08 7.973512713 0.074908648 AAFTTPDHAPLSPQS(ph)SVASSGSEQTEEQGSSR ddPTM_K562_Paclitaxel_30min_R1 1 AAFTTPDHAPLSPQSSVASSGSEQTEEQGSSR 32 0 M0QZ22;Q5PRF9;A0A087WZT0;M0R0X3 M0QZ22 SAMD4B Protein Smaug homolog 2 1 AAFTTPDHAPLS(0.134)PQS(0.43)S(0.43)VAS(0.003)S(0.001)GSEQTEEQGSSR 88.045 4.13E-08 111620000 1424.2 1492.3 1854 1815.3 1546.3 1445.4 1255.2 1666 1560.4 1819.9 TRUE FALSE 1444.143194 1655.234361 1385.93477 1698.874783 1756.932239 1701.721396 1493.367647 1524.462901 1710.283392 1449.003381 0.996645842 1.142326086 0.95647449 1.172443629 1.212510793 1.174408161 1.03061709 1.052076842 1.180317047 1 10.50084525 -3.896868269 0.90505717 1.111201035 3.98E-13 0.109297301 0.084097614 52.42301705 4.685925131 0.02870351 99.21067026 0.000126804 3.896868269 -1.111201035 AAGALGSASSGS(ph)MPNLAAR ddPTM_K562_Paclitaxel_30min_R1 1 AAGALGSASSGSMPNLAAR 19 0 Q9P2Q2 Q9P2Q2 FRMD4A FERM domain-containing protein 4A 1 AAGALGSASS(0.003)GS(0.997)MPNLAAR 217.67 1.87E-29 23299000 1302.7 878.13 1458.7 788.84 810.14 675.17 804.5 980.11 979.79 1183.8 TRUE FALSE 1320.941819 974.007203 1090.433144 738.2473331 920.4947838 794.9019196 957.1496752 896.8435378 1073.903207 942.5409102 1.401468949 1.033384538 1.156908026 0.783252297 0.9766099 0.843360655 1.015499343 0.951516829 1.139370393 1 9.880411428 -4.590336087 1.130460683 0.963539413 2.661036441 0.581242525 0.106706655 4.421928602 1.588913322 0.031620262 12.87645119 2.57E-05 4.590336087 1.697497028 AAGARPLT(ph)SPESLSR ddPTM_K562_Paclitaxel_30min_R1 1 AAGARPLTSPESLSR 15 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 AAGARPLT(0.76)S(0.234)PES(0.005)LS(0.001)R 132.15 0.00010923 127980000 2202.6 2174.1 2471.9 2334.9 1736.3 1821.1 1923.5 2491.6 1621.8 2580.5 TRUE FALSE 2233.443196 2411.47559 1847.838273 2185.149965 1972.813456 2144.046515 2288.474084 2279.923028 1777.581136 2054.592684 1.087049133 1.173700077 0.899369636 1.063544119 0.960196866 1.043538475 1.113833463 1.10967154 0.86517447 1 11.0046367 -5.734776664 24.99876409 1.016313159 1.130374636 0.267376929 0.080551894 312.272799 292780.1797 0.0202259 0.053480813 1.84E-06 5.734776664 0.114061478 AAGGAPS(ph)PPPPVR ddPTM_K562_Paclitaxel_30min_R1 4 AAGGAPSPPPPVR 13 0 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 AAGGAPS(1)PPPPVR;AAGGAPS(1)PPPPVR;AAGGAPS(1)PPPPVR;AAGGAPS(1)PPPPVR 156.36 5.12E-05 221532000 4545.16 4406.78 5862.7 5067.79 4260.41 4783.4 4270.08 5927.4 4764.2 6859.3 TRUE FALSE 4608.806263 4887.927143 4382.588876 4742.764632 4840.749971 5631.668828 5080.305389 5423.830372 5221.822697 5461.370895 0.843891827 0.895000035 0.802470471 0.868420168 0.886361696 1.031182268 0.930225302 0.993126172 0.956137717 1 12.41504742 -7.084642791 4.684183995 0.978140335 0.854231163 0.776642661 0.033263418 0.104218759 4.002654669 0.010686379 0.010846525 8.23E-08 7.084642791 -0.123909173 AAGISLIVPGKS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 2 AAGISLIVPGKSPTR 15 1 F2Z357;J3KPC5;P47736;P47736-3;P47736-4 F2Z357 RAP1GAP Rap1 GTPase-activating protein 1 1 AAGISLIVPGKS(0.846)PT(0.154)R;AAGISLIVPGKS(0.5)PT(0.5)R 158.45 3.12E-06 131240000 4936 4219.6 8255.8 5634.3 4392 3730 3196 5755.1 4540.7 6412.9 TRUE FALSE 5005.119229 4680.310198 6171.521184 5272.941216 4990.264757 4391.463128 3802.424316 5266.168333 4976.854523 5105.94746 0.980252787 0.916638926 1.208692653 1.032705733 0.977343538 0.860068217 0.744704944 1.031379264 0.974717144 1 12.31796298 -6.972902281 3.914760362 0.913067162 1.037387791 0.209103735 0.101933281 0.347085343 11.76265932 0.035311477 0.039012293 1.06E-07 6.972902281 0.124320629 AAGMS(ph)SPGAQSHPEELPR ddPTM_K562_Paclitaxel_30min_R1 3 AAGMSSPGAQSHPEELPR 18 0 M0R300;M0R0P8;Q13459-2;Q13459;M0QZY4;M0R2J3 M0R300 MYO9B Unconventional myosin-IXb 1 AAGMS(0.788)S(0.212)PGAQSHPEELPR;AAGMS(0.929)S(0.071)PGAQSHPEELPR;AAGMS(0.5)S(0.5)PGAQSHPEELPR 142.27 1.25E-10 66975000 3289.87 2829.22 4632.08 3561.43 2646.36 2579.17 2909.62 3550.71 3230.29 4042.66 TRUE FALSE 3335.93833 3138.123807 3462.654115 3333.01582 3006.839035 3036.549586 3461.705206 3249.055023 3540.573788 3218.763673 1.036403622 0.974946944 1.075771466 1.035495662 0.934159616 0.943390039 1.07547666 1.009410865 1.099979417 1 11.65229094 -10.7251892 4.673075841 0.999999988 1.017757474 0.01073659 0.053424173 39430737.27 29.22943217 8.327274277 0.013286929 1.88E-11 10.7251892 0.017757486 AAGMSS(ph)PGAQSHPEELPR ddPTM_K562_Paclitaxel_30min_R1 1 AAGMSSPGAQSHPEELPR 18 0 M0R300;M0R0P8;Q13459-2;Q13459;M0QZY4;M0R2J3 M0R300 MYO9B Unconventional myosin-IXb 1 AAGMS(0.14)S(0.86)PGAQSHPEELPR 131.31 8.08E-09 72419000 796.45 886.05 1190.6 1023.1 813.71 797.29 780.52 1137.3 707.88 1416 TRUE FALSE 807.6027573 982.7919354 890.0183048 957.4829452 924.5510782 938.678187 928.6195954 1040.679266 775.8750369 1127.418423 0.716329218 0.871718889 0.789430337 0.849270267 0.82006029 0.832590783 0.823668992 0.923063918 0.688187297 1 10.13880733 -11.66581022 2.680965407 1.022971125 0.819198924 0.418829186 0.06578984 39542101.7 34539453.94 6218526.423 0.014855448 2.16E-12 11.66581022 -0.203772201 AAGPAS(ph)PPEEDPER ddPTM_K562_Paclitaxel_30min_R1 1 AAGPASPPEEDPER 14 0 Q96KM6 Q96KM6 ZNF512B Zinc finger protein 512B 1 AAGPAS(1)PPEEDPER 88.224 0.017504 12525000 704.07 762.42 1038.4 864.57 885.33 670.78 553.89 831.75 718.81 958.23 TRUE FALSE 713.9291522 845.6635939 776.2430772 809.1203499 1005.926935 789.7334148 658.987736 761.0876459 787.8549122 762.9422 0.935757849 1.108424195 1.017433663 1.060526407 1.318483805 1.035115655 0.863745295 0.997569208 1.032653473 1 9.575429953 -7.524927535 24.99979722 0.969880992 1.093093073 0.22594186 0.099726774 99.93169684 1219350.844 0.038987168 0.030400153 2.99E-08 7.524927535 0.123212081 AAGPAS(ph)PPEEDPERTK ddPTM_K562_Paclitaxel_30min_R1 1 AAGPASPPEEDPERTK 16 1 Q96KM6 Q96KM6 ZNF512B Zinc finger protein 512B 1 AAGPAS(1)PPEEDPERTK 80.459 0.015377 7512300 1721.2 1473.4 2561.3 1880.8 1902.1 1348.8 1337.4 1857.1 1474.8 1786 TRUE FALSE 1745.30211 1634.270795 1914.668137 1760.173906 2161.198223 1587.990742 1591.164668 1699.327763 1616.46113 1422.01222 1.227346774 1.149266351 1.346449848 1.23780505 1.519816914 1.116720883 1.11895288 1.195016287 1.136742081 1 10.47371815 AAGS(ph)PSPLPAPDPAPK ddPTM_K562_Paclitaxel_30min_R1 1 AAGSPSPLPAPDPAPK 16 0 J3KRF7;J3KRY8;Q9BZE9-3;Q9BZE9;Q9BZE9-2 J3KRF7 ASPSCR1 Tether containing UBX domain for GLUT4 1 AAGS(0.59)PS(0.41)PLPAPDPAPK 167.61 9.00E-08 18801000 3627.6 2585.5 5988.4 3284.8 2898.3 2461.9 2259.7 3526.3 3018.1 4240.4 TRUE FALSE 3678.397592 2867.793634 4476.554356 3074.12763 3293.097529 2898.483398 2688.466279 3226.718805 3308.00199 3376.204152 1.089506862 0.849413573 1.325913409 0.910527768 0.975384598 0.858503594 0.796298493 0.955723842 0.979799159 1 11.72118643 AAHTEDINACT(ph)LTTSPR ddPTM_K562_Paclitaxel_30min_R1 1 AAHTEDINACTLTTSPR 17 0 H7C155;P04049;P04049-2 H7C155 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 AAHTEDINACT(0.42)LT(0.064)T(0.258)S(0.258)PR 114.55 0.0005337 7785900 655.26 390.86 858.63 670.76 548.1 515.72 546.72 804.95 540.29 778.18 TRUE FALSE 664.4356617 433.5354166 641.8582371 627.7404558 622.7604994 607.1757009 650.4572659 736.5644732 592.1872686 619.5864888 1.072385653 0.699717351 1.035946149 1.013160337 1.005122789 0.979969241 1.049824807 1.188800089 0.955778215 1 9.275161874 AAHTEDINACTLTT(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 2 AAHTEDINACTLTTSPR 17 0 H7C155;P04049;P04049-2 H7C155 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 AAHTEDINACT(0.004)LT(0.136)T(0.43)S(0.43)PR;AAHTEDINACT(0.02)LT(0.132)T(0.424)S(0.424)PR 189.98 5.96E-11 98234000 4402.7 3595 5137.8 4593.1 3871.8 3595.5 3266.7 4376.4 2857.1 5491.5 TRUE FALSE 4464.351383 3987.514258 3840.698846 4298.519124 4399.20471 4233.111442 3886.539272 4004.597503 3131.537221 4372.329286 1.02104647 0.911988553 0.878410247 0.983118801 1.006146706 0.968159341 0.888894458 0.91589568 0.71621715 1 12.09418634 -8.00150101 2.294029048 0.861443175 0.9581127 0.201419863 0.076786381 0.471077191 4.923337112 0.041765526 0.02262184 9.97E-09 8.00150101 0.096669525 AAHTEDINACTLTTS(ph)PRLPVF ddPTM_K562_Paclitaxel_30min_R1 2 AAHTEDINACTLTTSPRLPVF 21 1 H7C155;P04049;P04049-2 H7C155 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 AAHTEDINACTLT(0.015)T(0.237)S(0.748)PRLPVF;AAHTEDINACTLT(0.027)T(0.243)S(0.73)PRLPVF 154.67 9.30E-18 84891000 3336.9 2810 3452 3298.2 2665.6 2776.4 2593.1 2836.2 3684.4 3179.2 TRUE FALSE 3383.626895 3116.805303 2580.499906 3086.668214 3028.699849 3268.755557 3085.127188 2595.247107 4038.303082 2531.277295 1.336727075 1.231317212 1.01944576 1.219411331 1.196510495 1.291346295 1.218802537 1.025271752 1.595361792 1 11.30564984 -6.489058041 24.81921404 1.224237426 1.186053749 0.003446965 0.16894213 4370.957222 3207613.66 0.045780995 0.067854238 3.24E-07 6.489058041 -0.038183677 AAHVPENS(ph)DTEQDVLTVKPVR ddPTM_K562_Paclitaxel_30min_R1 4 AAHVPENSDTEQDVLTVKPVR 21 1 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BS99 H3BSS6 ZNF106 Zinc finger protein 106 1 AAHVPENS(0.992)DT(0.008)EQDVLTVKPVR;AAHVPENS(0.843)DT(0.156)EQDVLT(0.001)VKPVR;AAHVPENS(0.955)DT(0.045)EQDVLTVKPVR;AAHVPENS(0.927)DT(0.071)EQDVLT(0.002)VKPVR 118.24 1.11E-05 90265000 12879.8 12139.2 20896.3 14868.5 12576.1 10753.9 10043.9 14763 11722.5 17520.4 TRUE FALSE 13060.15694 13464.59891 15620.77062 13914.90096 14289.17774 12660.95317 11949.67759 13508.791 12848.4985 13949.73286 0.936229895 0.965222706 1.119789947 0.997503042 1.024333432 0.90761259 0.856624117 0.968390659 0.921056957 1 13.76794987 -7.259863934 24.84908465 0.924129232 1.011764045 0.314557856 0.056971127 151.4969713 2389526.862 0.01983207 0.018847067 5.50E-08 7.259863934 0.087634812 AAHVPENS(ph)DTEQDVLTVKPVRK ddPTM_K562_Paclitaxel_30min_R1 1 AAHVPENSDTEQDVLTVKPVRK 22 2 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BS99 H3BSS6 ZNF106 Zinc finger protein 106 1 AAHVPENS(0.819)DT(0.181)EQDVLTVKPVRK 73.981 0.0012172 47254000 3607.1 2391.3 7985.9 3781.1 2617.4 2388.5 2131.7 3906.7 3401.5 4916.7 TRUE FALSE 3657.610529 2652.390221 5969.760777 3538.59717 2973.934193 2812.066939 2536.178947 3574.80145 3728.229273 3914.673841 0.934333402 0.677550756 1.524970156 0.903931544 0.759688882 0.718340034 0.647864688 0.913179896 0.952372899 1 11.9346764 AAIPPPVYEEQDRPRS(ph)PTGPSNSFLANMGGTVAHK ddPTM_K562_Paclitaxel_30min_R1 2 AAIPPPVYEEQDRPRSPTGPSNSFLANMGGTVAHK 35 2 H0Y6J6;Q5W012;Q96I25 H0Y6J6 RBM17 Splicing factor 45 1 AAIPPPVY(0.015)EEQDRPRS(0.667)PT(0.16)GPS(0.062)NS(0.097)FLANMGGTVAHK;AAIPPPVY(0.06)EEQDRPRS(0.828)PT(0.058)GPS(0.046)NS(0.007)FLANMGGTVAHK 82.988 6.55E-09 431130000 3223.1 3233.8 4745.4 3251.2 2605.55 2346.96 2840.7 4132 3583.4 4994 TRUE FALSE 3268.233344 3586.87722 3547.36508 3042.682584 2960.470022 2763.160403 3379.707996 3780.960809 3927.601581 3976.220059 0.821944786 0.90208217 0.892145059 0.765219867 0.744543808 0.694921398 0.849980118 0.950893249 0.987772689 1 11.95718189 -8.258650025 3.073539766 0.985634747 0.805677902 0.637031114 0.059670463 0.198692098 3.818333464 0.041556381 0.019334546 5.51E-09 8.258650025 -0.179956846 AAIS(ph)ET(ph)EDMPMFEPK ddPTM_K562_Paclitaxel_30min_R1 1 AAISETEDMPMFEPK 15 0 Q3T8J9-3;A0A087WUE6;Q3T8J9-2;Q3T8J9;A4PB68 Q3T8J9-3 GON4L GON-4-like protein 2 AAIS(1)ET(1)EDMPMFEPK 45.158 0.031123 108200000 2059.5 2062.5 2213.3 2526.2 1803.1 2138.5 2150.9 2596.1 1616.7 2896.4 TRUE FALSE 2088.339354 2287.690725 1654.525041 2364.180839 2048.712747 2517.732949 2559.022047 2375.545101 1771.991259 2306.11209 0.90556715 0.992011938 0.717452134 1.025180367 0.888383854 1.091765209 1.109669412 1.030108255 0.768389042 1 11.17124692 AAISQLRS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 AAISQLRSPR 10 1 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 AAISQLRS(1)PR 77.124 0.029527 11023000 2339.9 2498.9 3001.5 2727.8 2471.8 2501.9 2492.5 3147.8 1534.2 3430.7 TRUE FALSE 2372.665819 2771.738353 2243.734203 2552.851117 2808.501008 2945.576837 2965.438863 2880.374742 1681.566765 2731.521457 0.868624266 1.014723258 0.821422873 0.934589443 1.028181932 1.07836489 1.085636306 1.054494642 0.615615433 1 11.41548904 -5.239419494 21.94651973 0.965680506 0.868623718 0.036185257 0.136670056 3919.049019 3905661.175 0.034236507 1.276743583 5.76E-06 5.239419494 -0.097056788 AAKLENQES(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 AAKLENQESR 10 1 H0Y835;H0Y4P9;A0A2R8YGB3;Q9UNA1-2;Q9UNA1 H0Y835 ARHGAP26 Rho GTPase-activating protein 26 1 AAKLENQES(1)R 70.056 0.027414 0 1831.9 1674.9 1546.1 1750.6 1548.3 1722.6 1657.6 1588.2 1312.8 1792.8 TRUE FALSE 1857.552252 1857.771246 1155.767933 1638.324351 1759.204673 2028.078923 1972.120947 1453.272497 1438.900306 1427.426376 1.30132964 1.301483059 0.809686547 1.147747008 1.23243111 1.420794065 1.38159206 1.018106798 1.008038194 1 10.47920062 -8.375930549 9.111165585 1.007436441 1.219021221 0.283585594 0.159252744 0.540510139 39.69198128 0.096860817 0.046352974 4.21E-09 8.375930549 0.21158478 AAKLS(ph)EGSQPAEEEEDQETPSR ddPTM_K562_Paclitaxel_30min_R1 2 AAKLSEGSQPAEEEEDQETPSR 22 1 S4R3H4;E7EQT4;Q9UKV3-5;Q9UKV3 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 AAKLS(0.998)EGS(0.002)QPAEEEEDQETPSR;AAKLS(0.738)EGS(0.259)QPAEEEEDQET(0.003)PSR 97.08 0.00028927 89797000 2388.18 1898.32 4214.8 2426.44 1897.14 1558.29 1367.18 2412.8 2260.4 2597.7 TRUE FALSE 2421.621888 2105.584997 3150.721612 2270.818999 2155.562587 1834.630852 1626.595268 2207.81758 2477.52152 2068.287314 1.170834377 1.018033125 1.52334813 1.097922413 1.042196881 0.887029012 0.786445508 1.067461742 1.197861391 1 11.01422089 -6.635254442 3.554407023 0.983240145 1.226694911 0.315003541 0.155775769 0.289926226 7.079939144 0.049830182 0.065939825 2.32E-07 6.635254442 0.243454765 AAKLSEGS(ph)QPAEEEEDQETPSR ddPTM_K562_Paclitaxel_30min_R1 2 AAKLSEGSQPAEEEEDQETPSR 22 1 S4R3H4;E7EQT4;Q9UKV3-5;Q9UKV3 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 AAKLS(0.162)EGS(0.838)QPAEEEEDQETPSR;AAKLS(0.367)EGS(0.632)QPAEEEEDQET(0.001)PSR 112.82 2.25E-05 77114000 3381.2 2851.6 5837.5 3787.3 2866.3 2670.3 1961.85 3202 3635.1 4508 TRUE FALSE 3428.547232 3162.947331 4363.750928 3544.399529 3256.738587 3143.840212 2334.100796 2929.970114 3984.267597 3589.267126 0.955222086 0.881223721 1.215777699 0.98749951 0.907354753 0.875900317 0.650300107 0.816314309 1.110050453 1 11.80947358 -6.818454042 3.279773831 0.866805825 1.017323099 0.138328269 0.137342649 0.424587021 9.274026998 0.045930893 0.055045856 1.52E-07 6.818454042 0.150517274 AAKPGPAEAPS(ph)PT(ph)ASPSGDASPPATAPYDPR ddPTM_K562_Paclitaxel_30min_R1 1 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 AAKPGPAEAPS(0.451)PT(0.447)AS(0.327)PS(0.412)GDAS(0.288)PPAT(0.049)APY(0.025)DPR 50.865 0.021239 37658000 2060.9 2011.2 3484.2 2039.9 1830.2 1761.1 1292.3 2265.4 2213.6 2890 TRUE FALSE 2089.758958 2230.789617 2604.570618 1909.069944 2079.504226 2073.406358 1537.507179 2072.94013 2426.226171 2301.016414 0.908189505 0.969480098 1.13192179 0.829663766 0.903732895 0.90108282 0.668186098 0.900880201 1.054414978 1 11.16805556 -4.890957125 11.96145491 0.920329835 0.663983987 0 0.120139111 5522811.95 11670827.78 0.031382786 36433848.03 1.29E-05 4.890957125 -0.256345849 AAKPGPAEAPS(ph)PTASPSGDAS(ph)PPATAPYDPR ddPTM_K562_Paclitaxel_30min_R1 1 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 AAKPGPAEAPS(0.886)PT(0.136)AS(0.267)PS(0.181)GDAS(0.452)PPAT(0.063)APY(0.015)DPR 58.452 0.0012811 60761000 1788.9 1301.8 2516.2 1907.1 1539.9 1292.5 1243.8 1806.7 1790.2 2114.9 TRUE FALSE 1813.950119 1443.934926 1880.95419 1784.787142 1749.660451 1521.706727 1479.804557 1653.209558 1962.156709 1683.882219 1.077242873 0.857503518 1.117034297 1.059923979 1.03906344 0.903689528 0.878805263 0.981784557 1.165257692 1 10.71757552 -8.722168727 24.93249192 1.082629064 0.986705352 0.144253064 0.090659507 254.6414797 161669.3408 0.062507802 0.023624903 1.90E-09 8.722168727 -0.095923712 AAKPGPAEAPS(ph)PTASPSGDASPPATAPYDPR ddPTM_K562_Paclitaxel_30min_R1 2 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 AAKPGPAEAPS(0.764)PT(0.218)AS(0.008)PS(0.004)GDAS(0.004)PPAT(0.001)APYDPR;AAKPGPAEAPS(0.665)PT(0.275)AS(0.038)PS(0.006)GDAS(0.01)PPAT(0.005)APY(0.001)DPR 63.925 0.00034922 99055000 4130.1 3669.1 6379.5 4355.9 3731.8 3212.3 3109.8 5171.1 4234.4 5253.8 TRUE FALSE 4187.934142 4069.704746 4768.916324 4076.53207 4240.13434 3781.956302 3699.868316 4731.782778 4641.13304 4183.072676 1.001162176 0.972898408 1.140051033 0.974530539 1.013641088 0.904109633 0.884485784 1.131173935 1.109503324 1 12.03034735 -8.285852985 24.99730138 1.090253976 0.987610245 0.26556349 0.072308194 1107.825647 1134305.381 0.041485465 0.019943467 5.18E-09 8.285852985 -0.102643731 AAKPGPAEAPSPTASPS(ph)GDAS(ph)PPATAPYDPR ddPTM_K562_Paclitaxel_30min_R1 1 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 AAKPGPAEAPS(0.196)PT(0.182)AS(0.186)PS(0.503)GDAS(0.504)PPAT(0.202)APY(0.226)DPR 49.453 0.0083779 44462000 1092.3 955.03 1968.2 1311.4 918.19 1002 881.4 1301 1141.1 1354.3 TRUE FALSE 1107.59557 1059.303405 1471.303568 1227.292674 1043.263023 1179.690631 1048.641049 1190.471929 1250.707754 1078.292917 1.02717504 0.982389283 1.364474852 1.138181152 0.967513564 1.094035408 0.972501101 1.104033896 1.159896105 1 10.07453342 -6.65795262 21.60617082 1.053149236 1.134550242 0.107944581 0.109489669 10.60601143 2183.0828 0.033721423 0.043534112 2.20E-07 6.65795262 0.081401007 AAKPGPAEAPSPTASPSGDAS(ph)PPATAPYDPR ddPTM_K562_Paclitaxel_30min_R1 2 AAKPGPAEAPSPTASPSGDASPPATAPYDPR 31 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 AAKPGPAEAPSPT(0.002)AS(0.013)PS(0.105)GDAS(0.872)PPAT(0.006)APY(0.002)DPR;AAKPGPAEAPSPTASPS(0.054)GDAS(0.9)PPAT(0.041)APY(0.005)DPR 104.65 1.41E-12 124429000 3613.3 3546 6910.7 4741.9 3429.3 3550.8 3157.4 4818.7 3858.5 5211.6 TRUE FALSE 3663.897348 3933.164272 5166.008315 4437.775758 3896.428719 4180.484524 3756.500167 4409.321358 4229.126165 4149.473059 0.882978946 0.947870782 1.24497936 1.069479352 0.939017717 1.007473591 0.905295712 1.062621999 1.019195957 1 12.01871243 -6.744592365 24.96470138 0.988810299 1.044912531 0.052175341 0.096212698 768.5480601 1138865.74 0.030348954 0.03907176 1.80E-07 6.744592365 0.056102231 AALAPAKES(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 AALAPAKESPR 11 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;H0YAB7;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 AALAPAKES(1)PR 131.32 0.0025257 118790000 3928.7 3105.3 5684 4063.9 3252.6 2676 2471.7 4138.3 2721.6 4694.7 TRUE FALSE 3983.713921 3444.347155 4249.003901 3803.259643 3695.659187 3150.551027 2940.692172 3786.725585 2983.02184 3737.917563 1.065757565 0.921461508 1.136730233 1.017480878 0.988694674 0.84286263 0.786719376 1.013057544 0.798043774 1 11.86801904 -7.082269677 3.907268379 0.883193578 1.032234736 0.399543112 0.085708024 0.237477689 6.761191872 0.028046647 0.028711581 8.27E-08 7.082269677 0.149041158 AALPSLTNPPSLS(ph)PIRR ddPTM_K562_Paclitaxel_30min_R1 1 AALPSLTNPPSLSPIRR 17 1 P42858 P42858 HTT Huntingtin 1 AALPSLTNPPS(0.226)LS(0.774)PIRR 88.574 0.004487 7689300 499.14 577.42 574.11 457.55 520.21 546.14 375.16 581.72 543.01 526.5 TRUE FALSE 506.1295 640.4646683 429.16883 428.2047909 591.0714092 642.9902608 446.3446515 532.299255 595.1685367 419.199011 1.207372839 1.527829626 1.023783021 1.021483304 1.410001917 1.533854432 1.064755975 1.269800837 1.419775622 1 8.711491503 -11.33756163 5.122419427 0.999974633 1.27316123 0.164556269 0.186102532 0.000240685 3.11E-05 0.184825573 0.044808746 4.60E-12 11.33756163 0.273186598 AAMYDIIS(ph)SPSKDSTK ddPTM_K562_Paclitaxel_30min_R1 1 AAMYDIISSPSKDSTK 16 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 AAMYDIIS(0.5)S(0.5)PSKDSTK 97.095 0.0034631 28095000 1501.1 1233.4 3626.2 1872.7 1419.5 1170.9 1148.1 1750 1629.3 2816.6 TRUE FALSE 1522.120031 1368.066783 2710.720962 1752.593404 1612.859932 1378.542675 1365.945982 1601.326577 1785.801545 2242.575374 0.678737513 0.610042721 1.208753558 0.781509252 0.719199877 0.614714088 0.609097022 0.71405697 0.79631729 1 11.13094076 AAMYDIISS(ph)PSKDSTK ddPTM_K562_Paclitaxel_30min_R1 1 AAMYDIISSPSKDSTK 16 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 AAMYDIIS(0.147)S(0.791)PS(0.022)KDS(0.032)T(0.009)K 83.894 0.01222 23667000 1695.9 1071.2 3557.7 1861.2 1514.3 1183.2 957.64 1946.7 1571.3 2807.2 TRUE FALSE 1719.647832 1188.157239 2659.514634 1741.830962 1720.573297 1393.023907 1139.347191 1781.315684 1722.230386 2235.091099 0.769386014 0.531592309 1.189890933 0.779310948 0.769800076 0.623251512 0.509754252 0.79697677 0.770541472 1 11.12611792 -4.86720489 19.75127635 0.761274101 4.178052767 0 0.194300598 36012.69561 5681867.198 0.047435276 339267.4593 1.36E-05 4.86720489 3.416778666 AANQVEETLHTHLPQT(ph)PETNFR ddPTM_K562_Paclitaxel_30min_R1 2 AANQVEETLHTHLPQTPETNFR 22 0 Q5VZL5-2;Q5VZL5-4;Q5VZL5 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 AANQVEETLHT(0.001)HLPQT(0.983)PET(0.016)NFR;AANQVEETLHTHLPQT(0.99)PET(0.01)NFR 144.29 8.62E-17 49253000 2506.5 2670.7 2667 2545.3 2458.6 2537.7 2364.1 2896.4 2275.2 3155.5 TRUE FALSE 2541.598733 2962.296058 1993.682865 2382.05585 2793.502944 2987.725464 2812.675634 2650.332741 2493.743126 2512.407368 1.011618882 1.179066777 0.793534874 0.948116886 1.111882961 1.189188307 1.119514164 1.054897695 0.992571172 1 11.29485469 -6.7654116 24.99416743 1.088388161 0.983543846 0.164988755 0.103039989 183.2970641 1153350.29 0.033311122 0.039173752 1.72E-07 6.7654116 -0.104844314 AAPEAS(ph)SPPAS(ph)PLQHLLPGK ddPTM_K562_Paclitaxel_30min_R1 1 AAPEASSPPASPLQHLLPGK 20 0 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 2 AAPEAS(0.5)S(0.5)PPAS(1)PLQHLLPGK 88.836 0.0027553 49992000 2676.8 2218.5 4603.3 2920.3 2627.5 2405.5 2248 3124.9 3004.4 3905.4 TRUE FALSE 2714.283459 2460.723332 3441.139982 2733.005029 2985.409984 2832.08165 2674.546265 2859.42024 3292.986044 3109.477336 0.872906654 0.791362363 1.106661863 0.878927464 0.960100255 0.910790253 0.860127274 0.919582274 1.059015934 1 11.60245639 -2.000000102 0.067634678 1.092351508 0.567268621 0.135419608 0.085095798 638.536023 3.205458633 4.502847815 32.14067955 0.009999998 2.000000102 -0.525082887 AAPEAS(ph)SPPASPLQHLLPGK ddPTM_K562_Paclitaxel_30min_R1 4 AAPEASSPPASPLQHLLPGK 20 0 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 AAPEAS(0.862)S(0.138)PPASPLQHLLPGK;AAPEAS(0.774)S(0.226)PPASPLQHLLPGK;AAPEAS(0.975)S(0.025)PPASPLQHLLPGK;AAPEAS(0.557)S(0.439)PPAS(0.003)PLQHLLPGK 169.7 2.77E-13 257478000 9198.5 7383.76 15126.5 10377.7 7729.9 7755.62 6860.15 10294.9 10001.34 11198.8 TRUE FALSE 9327.30738 8189.943887 11307.62799 9712.120771 8782.843248 9130.970313 8161.82765 9420.283986 10962.01339 8916.478413 1.046075249 0.918517772 1.26817197 1.089232803 0.985012562 1.024055674 0.915364483 1.056502753 1.229410636 1 13.12225831 -12.436315 2.179051765 0.513147796 1.054526159 0.02382467 0.110060819 3032784.517 959895.1833 7245815.954 0.028880545 3.66E-13 12.436315 0.541378363 AAPEASS(ph)PPAS(ph)PLQHLLPGK ddPTM_K562_Paclitaxel_30min_R1 1 AAPEASSPPASPLQHLLPGK 20 0 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 2 AAPEAS(0.399)S(0.603)PPAS(0.999)PLQHLLPGK 105.72 0.00083192 56493000 4081 3094.7 6695.2 4129.7 3454.3 3024.4 2715.9 4728.5 4033.4 4936.7 TRUE FALSE 4138.146591 3432.589812 5004.913955 3864.839526 3924.834142 3560.734875 3231.227847 4326.784411 4420.826092 3930.59783 1.052803357 0.873299676 1.273321304 0.983270152 0.998533636 0.905901603 0.822070328 1.100795502 1.124721043 1 11.94053304 -3.232463247 13.96965974 1.01003728 1.01278431 0 0.125840924 0 0 0.029311535 0 0.000585513 3.232463247 0.002747029 AAPPCPPCQS(ph)PVPQRR ddPTM_K562_Paclitaxel_30min_R1 2 AAPPCPPCQSPVPQRR 16 1 A7MCY6 A7MCY6 TBKBP1 TANK-binding kinase 1-binding protein 1 1 AAPPCPPCQS(1)PVPQRR;AAPPCPPCQS(1)PVPQRR 133.52 2.34E-07 40972000 1080.44 1013.97 1698.61 1283.9 1128.67 963.28 990.83 1403.15 1128.36 915.95 TRUE FALSE 1095.569493 1124.678674 1269.774897 1201.556401 1282.413963 1134.104183 1178.83482 1283.943649 1236.74402 729.2788872 1.502264103 1.542179121 1.741137608 1.647595209 1.758468516 1.555103545 1.616438979 1.760566049 1.695845089 1 9.510326818 -11.40258119 6.008536139 0.999832925 1.649420109 0.828366534 0.088291887 0.00020581 2.05E-05 0.089036335 0.021589046 3.96E-12 11.40258119 0.649587183 AAPPPPPPPPPLES(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 5 AAPPPPPPPPPLESSPR 17 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 AAPPPPPPPPPLES(0.5)S(0.5)PR;AAPPPPPPPPPLES(0.5)S(0.5)PR;AAPPPPPPPPPLES(0.5)S(0.5)PR;AAPPPPPPPPPLES(0.789)S(0.211)PR;AAPPPPPPPPPLES(0.5)S(0.5)PR 184.92 1.51E-10 767860600 1687.3 1823.39 2108.52 1950.91 1974.37 1552.92 1436.23 1988.63 1873.22 2110.69 TRUE FALSE 1710.927406 2022.473887 1576.198048 1825.787365 2243.31262 1828.308558 1708.747145 1819.683469 2053.151151 1680.530219 1.018087855 1.203473679 0.937917111 1.086435307 1.334883833 1.087935544 1.01679049 1.082803182 1.221728194 1 10.71470077 -4.878402219 8.653059843 1.108390073 9.29E-05 0.055430038 0.111328979 24427.89442 63139.98985 0.028044229 477486.6872 1.32E-05 4.878402219 -1.108297204 AAPQS(ph)PSVPK ddPTM_K562_Paclitaxel_30min_R1 2 AAPQSPSVPK 10 0 E9PF10;O75694-2;O75694 E9PF10 NUP155 Nuclear pore complex protein Nup155 1 AAPQS(0.962)PS(0.038)VPK;AAPQS(0.876)PS(0.124)VPK 131.17 0.00085881 191292000 7793.3 6667.9 13138.5 7829 6157.9 5729.7 5707.1 7952.6 5160.1 9929.4 TRUE FALSE 7902.430244 7395.923871 9821.52318 7326.882981 6996.710234 6745.781846 6789.992432 7276.976991 5655.750661 7905.78283 0.999575933 0.9355081 1.242321398 0.926775139 0.885011691 0.853271838 0.858864021 0.920462546 0.715394134 1 12.94869261 -6.507811031 23.12113196 0.870154394 1.053068439 0.419904929 0.098220836 240.458605 368978.8763 0.027197626 0.038767611 3.11E-07 6.507811031 0.182914045 AAPRPAPVAQPPAAAPPS(ph)AVGSSAAAPR ddPTM_K562_Paclitaxel_30min_R1 1 AAPRPAPVAQPPAAAPPSAVGSSAAAPR 28 1 Q9Y6H1;Q5T1J5 Q9Y6H1 CHCHD2;CHCHD2P9 "Coiled-coil-helix-coiled-coil-helix domain-containing protein 2;Putative coiled-coil-helix-coiled-coil-helix domain-containing protein CHCHD2P9, mitochondrial" 1 AAPRPAPVAQPPAAAPPS(0.699)AVGS(0.126)S(0.175)AAAPR 124.25 1.24E-14 5700700 899.38 787.28 1153.6 882.91 1004.3 752.76 713.67 907.69 733.34 878.22 TRUE FALSE 911.9740948 873.2378928 862.3594125 826.2841044 1141.102663 886.2514167 849.0851569 830.5760689 803.7805837 699.2382819 1.304239368 1.248841654 1.233284039 1.181691743 1.631922468 1.267452655 1.214300159 1.1878298 1.149508836 1 9.449640362 -8.753822855 1.012563724 1.010931836 1.307438491 0.407233425 0.117052455 0.535062459 1.149910068 0.115862428 0.04008962 1.76E-09 8.753822855 0.296506655 AAPRPAPVAQPPAAAPPSAVGS(ph)SAAAPR ddPTM_K562_Paclitaxel_30min_R1 1 AAPRPAPVAQPPAAAPPSAVGSSAAAPR 28 1 Q9Y6H1;Q5T1J5 Q9Y6H1 CHCHD2;CHCHD2P9 "Coiled-coil-helix-coiled-coil-helix domain-containing protein 2;Putative coiled-coil-helix-coiled-coil-helix domain-containing protein CHCHD2P9, mitochondrial" 1 AAPRPAPVAQPPAAAPPS(0.021)AVGS(0.727)S(0.252)AAAPR 125.82 9.20E-15 7577900 1339 1163.6 1446.7 1093.6 1218.8 1024 1293.2 1237.8 1082.2 1338.5 TRUE FALSE 1357.750131 1290.645783 1081.462692 1023.461391 1384.821194 1205.592022 1538.577949 1132.641164 1186.150145 1065.712965 1.274029852 1.211063227 1.014778583 0.960353701 1.299431685 1.13125397 1.443707639 1.062801337 1.113010899 1 10.05760321 -8.835720518 2.1999626 1.016681414 1.178115124 0.142565353 0.135385729 0.615104065 5.968222956 0.133075566 0.037601565 1.46E-09 8.835720518 0.16143371 AAQDFFS(ph)TCRSPEACCELTLQPLRR ddPTM_K562_Paclitaxel_30min_R1 1 AAQDFFSTCRSPEACCELTLQPLRR 25 2 A0A494BZY8;A0A1B0GVZ4;A0A494C0Q8;P06132;A0A494C1D8;A0A494C1T3;A0A494C007;H0Y5R6;A0A494C0S8;Q5T446;A0A1B0GVN9 A0A494BZY8 UROD Uroporphyrinogen decarboxylase 1 AAQDFFS(0.48)T(0.13)CRS(0.34)PEACCELT(0.05)LQPLRR 55.209 0.0076555 17979000 496.98 334.45 388.66 360.43 268.99 249.54 355.03 494.16 321.02 783.45 TRUE FALSE 503.9392533 370.966382 290.5379761 337.313633 305.630992 293.7924153 422.3950891 452.1780236 351.8554054 623.78246 0.807876601 0.594704734 0.465768108 0.540755239 0.489964069 0.470985374 0.677151277 0.724896983 0.564067488 1 9.284899176 -10.03915613 0.587901586 1.028789995 0.566978553 0.561616408 0.107795815 3.575664833 1.41283674 0.36365274 0.04814211 9.14E-11 10.03915613 -0.461811442 AAQEEYVKR ddPTM_K562_Paclitaxel_30min_R1 1 AAQEEYVKR 9 1 H3BQN4;J3KPS3;P04075;P04075-2;H3BR68 H3BQN4 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A 0 89.886 0.025459 10011000 1485.7 1335.3 2524.4 1919 1231.9 1295.5 1260.6 1781.1 1279.1 1962 FALSE TRUE 1506.504384 1481.09257 1887.083999 1795.923929 1399.705636 1525.238735 1499.792269 1629.784438 1401.96327 1562.143323 0.964382948 0.948115674 1.208009515 1.14965375 0.896016144 0.976375671 0.960086214 1.043300198 0.897461359 1 10.60931111 -6.765345829 24.99959197 0.964974049 1.069043629 0.280342886 0.082592868 148.4982736 950326.5275 0.027118213 0.031891369 1.72E-07 6.765345829 0.10406958 AAQPPAQPCQLCGRS(ph)PLGEAPPGTPPCR ddPTM_K562_Paclitaxel_30min_R1 3 AAQPPAQPCQLCGRSPLGEAPPGTPPCR 28 1 M0QXZ5;Q96B54 M0QXZ5 ZNF428 Zinc finger protein 428 1 AAQPPAQPCQLCGRS(0.974)PLGEAPPGT(0.026)PPCR;AAQPPAQPCQLCGRS(0.999)PLGEAPPGT(0.001)PPCR;AAQPPAQPCQLCGRS(1)PLGEAPPGTPPCR 77.894 5.15E-05 110765000 2851.74 2899.35 3863.93 2754.29 2675.1 2321.83 2590.58 3377.69 2899.46 3702.2 TRUE FALSE 2891.673158 3215.910838 2888.433083 2577.642167 3039.49391 2733.57395 3082.129031 3090.734152 3177.966088 2947.689608 0.98099649 1.090993716 0.979897298 0.87446187 1.031144494 0.927361532 1.045608406 1.048527682 1.078121007 1 11.5253689 -7.868800461 12.08328357 1.047380442 0.983243779 0.222819843 0.056629326 0.724077938 76.92458963 0.024477849 0.016502193 1.35E-08 7.868800461 -0.064136663 AAQQAASSSGQGQQAQT(ph)PTGK ddPTM_K562_Paclitaxel_30min_R1 1 AAQQAASSSGQGQQAQTPTGK 21 0 H0Y9X2;U3KQK7;U3KPX3;A0A590UJ43;P48729;P48729-2 H0Y9X2 CSNK1A1 Casein kinase I isoform alpha 1 AAQQAASSSGQGQQAQT(1)PTGK 238.72 9.61E-65 3312000 1158.1 1098.3 2027.1 1457 976.05 1100.4 1015.2 1684.3 906.06 1514.4 TRUE FALSE 1174.316973 1218.216108 1515.333534 1363.554541 1109.004535 1295.54049 1207.8289 1541.208202 993.0911114 1205.764449 0.973919055 1.010326776 1.25674093 1.130863116 0.919752225 1.074455704 1.001712152 1.278200069 0.823619499 1 10.23573238 AAQSPFSIPNSSS(ph)GPYGSQDSVHSSPEDGGGGR ddPTM_K562_Paclitaxel_30min_R1 1 AAQSPFSIPNSSSGPYGSQDSVHSSPEDGGGGR 33 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 AAQSPFSIPNS(0.005)S(0.044)S(0.629)GPY(0.312)GS(0.009)QDS(0.001)VHSSPEDGGGGR 125.34 6.13E-21 24619000 1027.5 1060.8 1303.8 1133.6 981.84 1018.3 1243.7 1206.5 969.94 1420.8 TRUE FALSE 1041.88817 1176.621731 974.6395648 1060.89597 1115.583231 1198.881207 1479.685582 1104.000294 1063.107071 1131.24018 0.921014112 1.040116637 0.861567315 0.937816733 0.986159483 1.059793692 1.308020709 0.975920334 0.939771314 1 10.14368955 -7.123262022 3.343198704 1.070563198 0.943324298 0.220438904 0.102068231 0.391546289 8.147383884 0.037180226 0.037566675 7.53E-08 7.123262022 -0.1272389 AAQSPFSIPNSSSGPYGS(ph)QDSVHSSPEDGGGGR ddPTM_K562_Paclitaxel_30min_R1 2 AAQSPFSIPNSSSGPYGSQDSVHSSPEDGGGGR 33 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 AAQS(0.003)PFS(0.001)IPNS(0.031)S(0.023)S(0.018)GPY(0.058)GS(0.762)QDS(0.066)VHS(0.029)S(0.01)PEDGGGGR;AAQSPFSIPNSSSGPY(0.042)GS(0.956)QDS(0.002)VHSSPEDGGGGR 140.4 1.13E-30 41012000 1580.94 1457.77 1975.13 1806.55 1421.66 1476.06 1531.69 1826.95 1237.04 1711.1 TRUE FALSE 1603.078038 1616.934258 1476.484003 1690.685969 1615.314161 1737.818516 1822.320182 1671.739194 1355.863219 1362.376881 1.176677365 1.186847987 1.083755915 1.240982574 1.185658817 1.275578396 1.337603572 1.227075428 0.995218899 1 10.41191014 -8.762971798 24.99891495 0.997609319 1.215098926 0.653155014 0.06315222 27.08402374 441759.9305 0.056938973 0.017705661 1.73E-09 8.762971798 0.217489607 AAS(ph)ALLLR ddPTM_K562_Paclitaxel_30min_R1 4 AASALLLR 8 0 F5H672;F5H5N2;B4DNC9;B3KQ30;Q9H1K1 F5H672 ISCU "Iron-sulfur cluster assembly enzyme ISCU, mitochondrial" 1 AAS(1)ALLLR;AAS(1)ALLLR;AAS(1)ALLLR;AAS(1)ALLLR 113.71 0.0065691 158818000 15235.4 14913.8 20568 16313.8 14884.1 13778.9 13175.9 14502.6 14098.5 17683 TRUE FALSE 15448.74261 16542.13912 15375.35402 15267.50589 16911.56641 16222.39445 15675.95824 13270.51361 15452.72392 14079.19489 1.097274576 1.174935019 1.09206202 1.084401914 1.201174253 1.152224582 1.113412973 0.942561965 1.097557356 1 13.78127722 -8.102328461 6.722748097 1.015682926 1.134361788 0.545114728 0.049409361 0.186690882 10.54946607 0.022749952 0.013078012 7.90E-09 8.102328461 0.118678862 AAS(ph)LNYLNQPSAAPLQVSR ddPTM_K562_Paclitaxel_30min_R1 2 AASLNYLNQPSAAPLQVSR 19 0 Q9NSK0-5;Q9NSK0;Q9NSK0-3 Q9NSK0-5 KLC4 Kinesin light chain 4 1 AAS(0.998)LNY(0.002)LNQPSAAPLQVSR;AAS(0.939)LNYLNQPS(0.061)AAPLQVSR 199.61 6.22E-19 61424000 2186.44 1894.7 2545.7 2369.9 1867.79 1635.82 1936.87 2266.58 1866.98 2058.6 TRUE FALSE 2217.056906 2101.569753 1903.00655 2217.905221 2122.21462 1925.909709 2304.380971 2074.019881 2046.311771 1639.05619 1.352642404 1.28218286 1.161038018 1.353159968 1.294778442 1.1750114 1.405919446 1.265374484 1.248469566 1 10.6786496 -9.351399402 2.222939336 1.000055383 1.284451235 0.584827862 0.071940213 1.57969855 9.083492158 0.067890704 0.018563686 4.45E-10 9.351399402 0.284395852 AAS(ph)LRGGVGAPGSPSTPPTR ddPTM_K562_Paclitaxel_30min_R1 2 AASLRGGVGAPGSPSTPPTR 20 1 Q9ULR3 Q9ULR3 PPM1H Protein phosphatase 1H 1 AAS(1)LRGGVGAPGSPSTPPTR;AAS(0.999)LRGGVGAPGS(0.001)PSTPPTR 86.508 0.0014073 61273000 2022.03 2105.62 2980.5 2263.42 1902.98 2085.56 1923.94 2644.47 2986.8 2701.35 TRUE FALSE 2050.344658 2335.518712 2228.035913 2118.254372 2162.198094 2455.404783 2288.997571 2419.805767 3273.695485 2150.813387 0.953288031 1.085876965 1.035903871 0.984861999 1.00529321 1.14161684 1.064247408 1.12506542 1.522073233 1 11.07066664 -8.534531553 24.98890314 1.281880944 1.044861793 0.321830618 0.127357934 228.5477318 490098.9433 0.078984727 0.029904956 2.92E-09 8.534531553 -0.237019152 AAS(ph)PESASSTPESLQAR ddPTM_K562_Paclitaxel_30min_R1 2 AASPESASSTPESLQAR 17 0 Q96BT3 Q96BT3 CENPT Centromere protein T 1 AAS(1)PESASSTPESLQAR;AAS(0.999)PES(0.001)ASSTPESLQAR 213 4.74E-23 155103000 2286.34 2118.34 3357.6 2737.8 1843.11 2264.2 2248.71 2832.5 2038.47 3082.5 TRUE FALSE 2318.355814 2349.627525 2509.932354 2562.209762 2094.172786 2665.724079 2675.390983 2591.861445 2234.274152 2454.284808 0.94461564 0.957357319 1.02267363 1.043974095 0.853272114 1.086151074 1.09008986 1.056055694 0.91035651 1 11.26108696 AAS(ph)PFR ddPTM_K562_Paclitaxel_30min_R1 2 AASPFR 6 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 AAS(1)PFR;AAS(1)PFR 107.01 0.012575 55346000 2732 2054.46 2926.7 2598.01 2374.9 2241.23 2238.77 2354.8 2442.99 2820.7 TRUE FALSE 2770.256429 2278.772891 2187.818388 2431.385267 2698.401587 2638.680672 2663.56492 2154.745042 2677.650105 2245.839792 1.233505809 1.014664046 0.974164941 1.082617414 1.201511166 1.17491937 1.185999522 0.959438447 1.192271201 1 11.1330393 AAS(ph)PPASASDLIEQQQK ddPTM_K562_Paclitaxel_30min_R1 1 AASPPASASDLIEQQQK 17 0 Q5VSL9-3;Q5VSL9-2;Q5VSL9 Q5VSL9-3 STRIP1 Striatin-interacting protein 1 1 AAS(0.999)PPASASDLIEQQQK 119 0.00025414 42883000 985.33 915.53 2100.8 1404.8 861.37 969.74 687.1 1309.8 1227.5 1464 TRUE FALSE 999.12766 1015.490662 1570.427058 1314.702416 978.7031771 1141.709773 817.4736381 1198.524314 1345.40686 1165.635996 0.857152373 0.871190204 1.347270557 1.127884193 0.839630193 0.979473675 0.70131125 1.028214913 1.154225559 1 10.18690162 -6.75162068 24.99629417 0.940878324 1.059210898 0.074633517 0.170190225 548.246776 1395711.867 0.053846644 0.068640185 1.77E-07 6.75162068 0.118332574 AAS(ph)PPASASDLIEQQQKR ddPTM_K562_Paclitaxel_30min_R1 2 AASPPASASDLIEQQQKR 18 1 Q5VSL9-3;Q5VSL9-2;Q5VSL9 Q5VSL9-3 STRIP1 Striatin-interacting protein 1 1 AAS(0.873)PPAS(0.05)AS(0.077)DLIEQQQKR;AAS(0.989)PPAS(0.01)AS(0.002)DLIEQQQKR 95.9 0.00086073 178944000 5401.7 4478.2 9959.8 5771.3 4398.9 3752 3961.6 5050.3 6050.1 5741.9 TRUE FALSE 5477.340466 4967.14502 7445.325309 5401.154649 4998.104654 4417.364519 4713.292919 4621.245492 6631.239138 4571.697628 1.198097711 1.086499026 1.62856906 1.181433045 1.093271047 0.966241619 1.030972147 1.010837957 1.450498191 1 12.15851427 -6.517948895 23.2805024 1.088100759 1.302999844 0.216653738 0.180852321 132.1316778 623975.7713 0.053255474 0.070906953 3.03E-07 6.517948895 0.214899085 AAS(ph)PQDLAGGYTSSLACHR ddPTM_K562_Paclitaxel_30min_R1 2 AASPQDLAGGYTSSLACHR 19 0 P51948;P51948-2;H0YJ92 P51948 MNAT1 CDK-activating kinase assembly factor MAT1 1 AAS(1)PQDLAGGYTSSLACHR;AAS(1)PQDLAGGYTSSLACHR 177.24 2.11E-14 104101000 1715.79 1554.99 1922.1 1796.96 1556.76 1572.13 1871.87 1845.96 1789.19 2293.33 TRUE FALSE 1739.816354 1724.769067 1436.842083 1681.711028 1768.817068 1850.925182 2227.047561 1689.134176 1961.049694 1825.948087 0.952829035 0.944588227 0.786901935 0.921007032 0.968711586 1.013678973 1.219666417 0.925072398 1.07398984 1 10.83443003 -7.048656531 2.267839177 1.053167348 0.896345971 0.416390674 0.081462276 0.302336706 3.09428896 0.029790108 0.0315441 8.94E-08 7.048656531 -0.156821378 AAS(ph)PS(ph)PQSVR ddPTM_K562_Paclitaxel_30min_R1 2 AASPSPQSVR 10 0 A9Z1X7;Q8IYB3-2;Q8IYB3;E9PCT1 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 2 AAS(1)PS(1)PQSVR;AAS(1)PS(1)PQSVR 126.66 0.0089477 273940000 12005.2 11552.6 15455.8 13865.5 11807.5 10813.9 10807.7 13870.5 11824.4 14049.4 TRUE FALSE 12173.30984 12813.95194 11553.79214 12976.22889 13415.8814 12731.59333 12858.40466 12692.11445 12960.18645 11186.12457 1.088250874 1.145522013 1.032868181 1.160028999 1.19933238 1.138159445 1.149495929 1.134630172 1.158594862 1 13.44942268 -6.317098529 24.99771887 1.143430979 1.094543928 0.106217805 0.055486173 536.6736574 241030.6521 0.014700909 0.021804994 4.82E-07 6.317098529 -0.048887051 AAS(ph)PSPQSVR ddPTM_K562_Paclitaxel_30min_R1 4 AASPSPQSVR 10 0 A9Z1X7;Q8IYB3-2;Q8IYB3;E9PCT1 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 AAS(0.915)PS(0.085)PQSVR;AAS(0.932)PS(0.068)PQSVR;AAS(0.99)PS(0.01)PQSVR;AAS(0.98)PS(0.02)PQSVR 167.84 0.00012461 332578000 9312.2 8884.2 10695.6 9801.1 8813 8047.8 7986.5 10509.4 8329.9 10321 TRUE FALSE 9442.599531 9854.207 7995.363498 9172.501314 10013.47981 9474.964333 9501.896683 9616.560872 9130.024114 8217.574535 1.149073792 1.199162473 0.972959048 1.11620543 1.218544446 1.153012278 1.156289687 1.170243219 1.111036362 1 13.00449692 -9.047099674 12.15243623 1.000000002 1.140750587 0.313983557 0.062889749 9.728403822 2511.162757 0.063437524 0.016382252 8.97E-10 9.047099674 0.140750585 AAS(ph)PSPQSVRR ddPTM_K562_Paclitaxel_30min_R1 2 AASPSPQSVRR 11 1 A9Z1X7;Q8IYB3-2;Q8IYB3;E9PCT1 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 AAS(0.996)PS(0.004)PQSVRR;AAS(1)PSPQSVRR 81.565 0.020057 11016800 1358.06 1100.14 1473.96 1393.4 998.81 1087.86 1144.73 1257.73 1583.12 1411.95 TRUE FALSE 1377.07703 1220.257006 1101.840568 1304.033561 1134.864832 1280.776697 1361.936542 1150.877986 1735.18575 1124.193815 1.224946279 1.085450738 0.980116198 1.159972189 1.009492151 1.139284596 1.211478415 1.023736273 1.543493414 1 10.13467507 -7.940674148 1.432467561 1.219321353 1.090091001 0.082068798 0.152745327 0.99019936 3.97417675 0.097685165 0.048859388 1.15E-08 7.940674148 -0.129230352 AAS(ph)SAAQGAFQGN ddPTM_K562_Paclitaxel_30min_R1 1 AASSAAQGAFQGN 13 0 O15127 O15127 SCAMP2 Secretory carrier-associated membrane protein 2 1 AAS(0.857)S(0.143)AAQGAFQGN 147.52 0.00013378 29684000 1534.9 1592.3 2173.1 1854.7 1687.1 1986 1860.9 2298.3 1805.7 2812.8 TRUE FALSE 1556.393336 1766.152699 1624.474028 1735.747843 1916.911583 2338.189215 2213.99606 2103.045069 1979.145553 2239.549816 0.694958123 0.788619519 0.725357399 0.775043194 0.855936121 1.044044298 0.98858978 0.939048131 0.883724728 1 11.12899304 -6.932600159 2.866677752 0.968043482 0.745581258 0.838417405 0.046463547 0.105648417 1.763144414 0.016117139 0.018268685 1.17E-07 6.932600159 -0.222462225 AAS(ph)VPCSVAPEK ddPTM_K562_Paclitaxel_30min_R1 1 AASVPCSVAPEK 12 0 Q9C073;D6RFX7 Q9C073 FAM117A Protein FAM117A 1 AAS(0.956)VPCS(0.044)VAPEK 98.942 0.0034566 0 2090.1 1705.3 3187.7 2027.7 1531.9 1547.2 1492.8 2367.6 1896.6 2255.9 TRUE FALSE 2119.367849 1891.490421 2382.92571 1897.652398 1740.570715 1821.574196 1776.051007 2166.457602 2078.776904 1796.146342 1.179952768 1.053082579 1.326687951 1.056513244 0.969058408 1.014156895 0.988811973 1.206169871 1.157353861 1 10.81068918 -6.425685123 24.99270719 1.056396059 1.176288972 0.288277005 0.093593808 69.08885853 17758.47774 0.027693859 0.041076629 3.75E-07 6.425685123 0.119892913 AASAPAKES(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 AASAPAKESPR 11 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 AASAPAKES(1)PR;AASAPAKES(1)PR;AASAPAKES(1)PR 104.81 0.017793 767898000 20420.2 18778.3 35053.6 24182.6 19704.7 18858.6 18301.7 27555.4 17865.8 30832.8 TRUE FALSE 20706.1458 20828.5783 26203.88514 22631.63627 22388.81374 22202.90792 21774.35203 25214.39677 19581.88992 24549.05844 0.843459877 0.848447135 1.067408969 0.921894269 0.912002951 0.904430122 0.886973001 1.027102397 0.797663583 1 14.58338007 AASDPLLSS(ph)VSPAVSK ddPTM_K562_Paclitaxel_30min_R1 1 AASDPLLSSVSPAVSK 16 0 P19532 P19532 TFE3 Transcription factor E3 1 AASDPLLS(0.064)S(0.898)VS(0.038)PAVSK 117.13 0.00053966 29977000 4230.6 3911.6 7304.6 5023.9 4100.5 3683 3211.7 4958.4 3573.8 5934.4 TRUE FALSE 4289.841453 4338.681716 5460.463388 4701.68954 4659.057522 4336.128338 3821.103309 4537.152971 3917.079458 4724.966023 0.907909482 0.91824612 1.155661937 0.995073725 0.986051011 0.917705718 0.808704928 0.96025092 0.829017487 1 12.20608824 -7.291045537 3.65505006 0.892650854 0.998842236 0.229147672 0.081709622 0.334416146 9.632573095 0.030011361 0.027331955 5.12E-08 7.291045537 0.106191381 AASDPLLSSVS(ph)PAVSK ddPTM_K562_Paclitaxel_30min_R1 1 AASDPLLSSVSPAVSK 16 0 P19532 P19532 TFE3 Transcription factor E3 1 AASDPLLS(0.172)S(0.258)VS(0.57)PAVSK 205.78 5.45E-17 34516000 4114.9 3321.4 6444.9 4777.9 3354.9 3594.2 3796.5 4723.7 3492.9 6170.7 TRUE FALSE 4172.521296 3684.041684 4817.805285 4471.466879 3811.894179 4231.580905 4516.866056 4322.392201 3828.408652 4913.107953 0.849263101 0.749839352 0.980602367 0.910109634 0.775862085 0.861283926 0.919350053 0.879767398 0.779223394 1 12.26242022 -11.63787518 2.737872084 1.014399973 0.858609374 0.284311557 0.06837129 34827109.21 32222886.03 3552784.277 0.017278102 2.30E-12 11.63787518 -0.155790598 AASGEDSTEEALAAAAAPWEGGPVPGVDRS(ph)PFAK ddPTM_K562_Paclitaxel_30min_R1 2 AASGEDSTEEALAAAAAPWEGGPVPGVDRSPFAK 34 1 F8W7U3;E7ESD2;Q641Q2-2;Q641Q2;A0A087WYF6 F8W7U3 FAM21A WASH complex subunit FAM21A 1 AASGEDSTEEALAAAAAPWEGGPVPGVDRS(1)PFAK;AASGEDSTEEALAAAAAPWEGGPVPGVDRS(1)PFAK 107.7 1.05E-14 40074000 3335.8 2698.76 4697.4 3335.8 2386.57 2695 2927.3 4033.9 3577.2 4329.3 TRUE FALSE 3382.511492 2993.419743 3511.483273 3121.856718 2711.661239 3172.92041 3482.739893 3691.195016 3920.806043 3446.986284 0.981295315 0.868416494 1.018711125 0.905677151 0.786675959 0.920491162 1.010372426 1.070847028 1.137459137 1 11.75111984 -7.932854521 2.792891996 1.075926212 0.90980648 0.535633025 0.065983577 0.2114429 3.329618052 0.033649531 0.020247568 1.17E-08 7.932854521 -0.166119732 AASIENVLQDS(ph)SPEHCGR ddPTM_K562_Paclitaxel_30min_R1 1 AASIENVLQDSSPEHCGR 18 0 K7EPJ5;O60291-4;O60291;O60291-3;O60291-2 K7EPJ5 MGRN1 E3 ubiquitin-protein ligase MGRN1 1 AASIENVLQDS(0.5)S(0.5)PEHCGR 163.68 1.02E-09 20570000 2242.7 2121 2497.9 2530.4 1912.5 2094.8 1926.6 2543.4 1450 2517 TRUE FALSE 2274.104719 2352.577953 1867.274251 2368.11147 2173.014879 2466.283368 2292.162292 2327.322295 1589.278979 2004.034018 1.134763531 1.173921167 0.931757762 1.181672291 1.084320355 1.230659432 1.143774143 1.161318757 0.793039921 1 10.96869128 -8.750442161 24.99997666 0.896519947 1.129088938 0.526107343 0.088734568 140.7555142 319984.4143 0.059486465 0.022006347 1.78E-09 8.750442161 0.232568991 AASIENVLQDSS(ph)PEHCGR ddPTM_K562_Paclitaxel_30min_R1 1 AASIENVLQDSSPEHCGR 18 0 K7EPJ5;O60291-4;O60291;O60291-3;O60291-2 K7EPJ5 MGRN1 E3 ubiquitin-protein ligase MGRN1 1 AASIENVLQDS(0.218)S(0.782)PEHCGR 189.15 7.60E-13 22354000 1436.7 1572.5 1831.8 1795.8 1447.2 1102.2 1530.8 2016.5 1214.2 2294.2 TRUE FALSE 1456.818233 1744.190868 1369.339435 1680.625426 1644.333141 1297.659694 1821.261309 1845.185738 1330.829335 1826.640781 0.797539532 0.954862547 0.749649 0.920063454 0.900195133 0.71040771 0.997054992 1.010152493 0.72856653 1 10.83497723 -15 0.173317194 1.503551035 0.84030293 0.120224782 0.106136816 295.304218 2.804326515 51.39272716 0.358926941 1.00E-15 15 -0.663248106 AASLNYLNQPS(ph)AAPLQVSR ddPTM_K562_Paclitaxel_30min_R1 2 AASLNYLNQPSAAPLQVSR 19 0 Q9NSK0-5;Q9NSK0;Q9NSK0-3 Q9NSK0-5 KLC4 Kinesin light chain 4 1 AAS(0.003)LNY(0.116)LNQPS(0.881)AAPLQVSR;AASLNYLNQPS(1)AAPLQVSR 170.95 2.12E-13 102865000 2110.69 2060.16 2592.02 1986.17 1700.84 1876.55 1830.95 2168 2014.45 2284.92 TRUE FALSE 2140.246172 2285.095236 1937.632493 1858.785946 1932.523203 2209.329794 2178.363204 1983.814868 2207.946923 1819.25205 1.176442908 1.256063027 1.065070941 1.021730852 1.062262485 1.214416548 1.197394943 1.090456305 1.213656416 1 10.82912972 -11.93187091 2.469704676 0.904184433 1.141172894 0.24601885 0.07555135 19977498.12 9694704.33 11031240.13 0.020367564 1.17E-12 11.93187091 0.236988461 AASPPAS(ph)ASDLIEQQQK ddPTM_K562_Paclitaxel_30min_R1 1 AASPPASASDLIEQQQK 17 0 Q5VSL9-3;Q5VSL9-2;Q5VSL9 Q5VSL9-3 STRIP1 Striatin-interacting protein 1 1 AAS(0.234)PPAS(0.722)AS(0.043)DLIEQQQK 96.82 0.0031769 48991000 599.27 961.38 1151.1 803.6 906.17 613.64 561.93 827.19 640.4 1067 TRUE FALSE 607.6616289 1066.34672 860.4905684 752.0606928 1029.605696 722.4604381 668.553284 756.9150463 701.9132814 849.5448143 0.715279075 1.255197727 1.012884257 0.885251349 1.211949833 0.850408861 0.786954699 0.890965413 0.826222784 1 9.730546243 AASPYSQRPAS(ph)PTAIR ddPTM_K562_Paclitaxel_30min_R1 2 AASPYSQRPASPTAIR 16 1 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 AASPYSQRPAS(0.988)PT(0.012)AIR;AASPYSQRPAS(0.59)PT(0.41)AIR 212.55 3.02E-22 42752000 3236.4 3383.8 4008.5 3787.6 3129 3250.1 3464.2 4071.1 3003.8 4224.6 TRUE FALSE 3281.719585 3753.254727 2996.504599 3544.680289 3555.222774 3826.459601 4121.513866 3725.234644 3292.328411 3363.624201 0.975649891 1.115836521 0.89085594 1.05382768 1.056961944 1.137600211 1.225319364 1.107506196 0.978803878 1 11.71580082 -6.786278594 2.586361939 1.103346286 1.004316112 0.166047081 0.083875968 0.448033092 6.137637841 0.028039148 0.034845427 1.64E-07 6.786278594 -0.099030173 AASQLAVPST(ph)PLSPHSAASGTAAGSQPSS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 AASQLAVPSTPLSPHSAASGTAAGSQPSSPR 31 0 O95155;O95155-4 O95155 UBE4B Ubiquitin conjugation factor E4 B 2 AASQLAVPS(0.252)T(0.671)PLS(0.077)PHS(0.001)AAS(0.044)GT(0.03)AAGS(0.198)QPS(0.233)S(0.495)PR 93.105 1.37E-09 12841000 961.15 1245.5 1242.3 895.11 1118.7 892.14 1029.6 1266.3 991.02 1355.4 TRUE FALSE 974.6090654 1381.487902 928.6660004 837.701651 1271.08588 1050.348503 1224.961225 1158.719911 1086.211899 1079.168736 0.903110916 1.280140775 0.860538273 0.776247146 1.177837939 0.973294044 1.135097028 1.073715233 1.006526471 1 10.07570474 AASQLAVPSTPLS(ph)PHSAASGTAAGSQPS(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 1 AASQLAVPSTPLSPHSAASGTAAGSQPSSPR 31 0 O95155;O95155-4 O95155 UBE4B Ubiquitin conjugation factor E4 B 2 AASQLAVPS(0.104)T(0.104)PLS(0.247)PHS(0.094)AAS(0.214)GT(0.193)AAGS(0.125)QPS(0.463)S(0.457)PR 64.16 0.0010288 0 2127.5 1971.6 2441.4 1987 1966.8 1726.1 1945.6 2035.5 2113.6 2898.3 TRUE FALSE 2157.291564 2186.865956 1825.038375 1859.562713 2234.711458 2032.199599 2314.767443 1862.57157 2316.620724 2307.624869 0.934853664 0.947669608 0.790873075 0.805834058 0.968403265 0.880645562 1.003095206 0.807137934 1.003898318 1 11.172193 -6.778683242 24.9908091 0.934020973 0.869730967 0.186839821 0.073996286 478.2375763 693086.8988 0.022999308 0.026139104 1.66E-07 6.778683242 -0.064290006 AASQLAVPSTPLS(ph)PHSAASGTAAGSQPSSPR ddPTM_K562_Paclitaxel_30min_R1 1 AASQLAVPSTPLSPHSAASGTAAGSQPSSPR 31 0 O95155;O95155-4 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 AASQLAVPS(0.224)T(0.156)PLS(0.62)PHSAASGTAAGSQPSSPR 100.14 6.92E-12 17186000 3922.6 3590 4578.8 4248.5 3674 3197.1 3452.4 4525.4 3736.9 4479.2 TRUE FALSE 3977.528502 3981.968341 3422.82531 3976.020226 4174.461001 3764.060795 4107.474877 4140.939023 4095.845942 3566.336581 1.115298125 1.116543055 0.959759471 1.114875205 1.170517955 1.055441827 1.15173506 1.161118399 1.148474309 1 11.80022715 -6.49162215 24.81030692 1.123434168 1.06383164 0.106917907 0.064173355 1157.119671 918478.5349 0.017701716 0.026218305 3.22E-07 6.49162215 -0.059602528 AASSLNLS(ph)NGETESVK ddPTM_K562_Paclitaxel_30min_R1 2 AASSLNLSNGETESVK 16 0 C9J840;A0A0D9SG62;G5E948;A0A0D9SEY1;O95819-2;O95819-6;O95819-3;E7EX83;H7C0P6;E7ENQ1;G3XAA2;H7C360;E7EN19;O95819-4;O95819;O95819-5 C9J840 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 AASSLNLS(1)NGETESVK;AASSLNLS(0.992)NGET(0.008)ESVK 291.68 5.64E-154 70094000 5396.1 4960.1 9559.5 6473.2 4310.3 4495 4367.2 5637.1 4876.7 7023.3 TRUE FALSE 5471.662048 5501.660492 7146.085995 6058.037925 4897.435834 5292.125137 5195.853402 5158.193169 5345.128825 5591.947605 0.978489506 0.983854085 1.277924348 1.083350266 0.875801452 0.946383176 0.92916704 0.922432314 0.95586175 1 12.44913513 -6.745926218 24.48789996 0.934345997 1.088045301 0.418426161 0.082127263 185.1928769 292329.6571 0.02538759 0.032648034 1.80E-07 6.745926218 0.153699304 AASSS(ph)S(ph)PGSPVASSPSR ddPTM_K562_Paclitaxel_30min_R1 2 AASSSSPGSPVASSPSR 17 0 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 2 AAS(0.202)S(0.248)S(0.78)S(0.386)PGS(0.382)PVAS(0.002)SPSR;AAS(0.007)S(0.023)S(0.971)S(0.749)PGS(0.25)PVAS(0.001)SPSR 173.19 1.32E-08 23904000 4489.8 4543.5 6123.7 4436.3 4585 4173.6 4417.2 5109.5 4776.6 6026.6 TRUE FALSE 4552.671052 5039.574695 4577.696198 4151.775574 5209.554625 4913.72936 5255.340641 4675.416083 5235.413772 4798.375612 0.948794221 1.05026682 0.954009558 0.865246056 1.085691293 1.024040166 1.095233276 0.974374759 1.09108044 1 12.22833038 -6.789222753 24.99975424 1.045245398 0.961373174 0.384907763 0.055776304 244.5668098 220062.3421 0.017243519 0.019556483 1.62E-07 6.789222753 -0.083872224 AASSSSPGSPVASS(ph)PSR ddPTM_K562_Paclitaxel_30min_R1 2 AASSSSPGSPVASSPSR 17 0 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 AASSSSPGSPVAS(0.023)S(0.976)PSR;AASSSSPGSPVAS(0.014)S(0.986)PSR 252.37 5.40E-65 15778500 5161.6 4792.2 6147.8 5798.4 4822.6 4048.5 4801.5 6017.6 4093.5 6886.9 TRUE FALSE 5233.878325 5315.428602 4595.711855 5426.516577 5479.519767 4766.444631 5712.559559 5506.367319 4486.698965 5483.346 0.954504481 0.969376837 0.838121807 0.989635995 0.999302208 0.869258411 1.041801768 1.004198407 0.818241082 1 12.4208408 AASVAAATTS(ph)PTPR ddPTM_K562_Paclitaxel_30min_R1 1 AASVAAATTSPTPR 14 0 Q9Y2D9 Q9Y2D9 ZNF652 Zinc finger protein 652 1 AASVAAAT(0.025)T(0.109)S(0.862)PT(0.004)PR 92.239 0.012992 39976000 3670.8 3820.2 4705.9 4275.3 3621.4 3876.8 3917 3992.6 4049.1 4811.4 TRUE FALSE 3722.202525 4237.302355 3517.837343 4001.101394 4114.695991 4564.296047 4660.230302 3653.403709 4438.034147 3830.834039 0.971642856 1.106104392 0.918295417 1.044446549 1.074099256 1.191462747 1.216505402 0.953683629 1.158503371 1 11.90344281 -6.751598301 3.142434445 1.109351125 1.006945533 0.20610297 0.087625312 0.390930925 7.985387761 0.027778773 0.034779788 1.77E-07 6.751598301 -0.102405592 AAT(ph)PLPSLR ddPTM_K562_Paclitaxel_30min_R1 2 AATPLPSLR 9 0 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 AAT(1)PLPSLR;AAT(1)PLPSLR 126.39 0.0033969 49204000 4592.8 4365.5 7109.7 5954.7 4646.2 4483.7 4315.1 5062.4 3183.3 5361.1 TRUE FALSE 4657.11337 4842.140053 5314.768303 5572.792194 5279.091101 5278.821241 5133.867699 4632.317521 3489.070188 4268.504877 1.091040892 1.134387846 1.245112389 1.305560695 1.236754145 1.236690924 1.202732068 1.085231868 0.817398665 1 12.05951511 -8.530341236 3.604064822 0.910685702 1.210515453 0.73725434 0.07065548 0.118205379 3.276513115 0.054368204 0.019797975 2.95E-09 8.530341236 0.299829751 AAT(ph)SPAPGPS(ph)DAT(ph)ARSRVS(ph)ASHGPR ddPTM_K562_Paclitaxel_30min_R1 1 AATSPAPGPSDATARSRVSASHGPR 25 2 Q8IXZ2;Q8IXZ2-2 Q8IXZ2 ZC3H3 Zinc finger CCCH domain-containing protein 3 4 AAT(0.507)S(0.507)PAPGPS(0.99)DAT(0.99)ARS(0.06)RVS(0.51)AS(0.436)HGPR 52.853 0.026124 30739000 1163.8 1119.3 1517.4 1560.3 1192.7 1218.4 664.24 969.22 1117.5 947.05 TRUE FALSE 1180.096791 1241.508959 1134.313603 1460.229342 1355.165933 1434.466133 790.2760724 886.8787113 1224.840868 754.0406902 1.565030649 1.646474753 1.504313518 1.936539182 1.79720531 1.902372314 1.048054943 1.17616824 1.624369724 1 9.558498567 -7.761372183 25 1.226828888 1.724560921 0.608607239 0.201470154 1.323077327 492464.5501 0.082439995 0.059701204 1.73E-08 7.761372183 0.497732033 AAT(ph)SPAPGPSDATAR ddPTM_K562_Paclitaxel_30min_R1 1 AATSPAPGPSDATAR 15 0 Q8IXZ2;Q8IXZ2-2 Q8IXZ2 ZC3H3 Zinc finger CCCH domain-containing protein 3 1 AAT(0.588)S(0.411)PAPGPSDATAR 108.66 0.0019569 0 1442.2 1437.1 1816.4 1728.9 1415.6 1318.3 1002.5 1538.8 1349 1469 TRUE FALSE 1462.39525 1594.007438 1357.827355 1618.016092 1608.428686 1552.081995 1192.719142 1408.069335 1478.577477 1169.616994 1.250319769 1.362845655 1.160916234 1.383372592 1.375175545 1.327000209 1.019751891 1.203872159 1.264155262 1 10.19182046 -7.737263697 24.99821151 1.138934155 1.311872785 0.476405749 0.095878884 217.9940481 225410.7342 0.036509338 0.028265932 1.83E-08 7.737263697 0.17293863 AATAARPPAPPPAPQPPS(ph)PTPS(ph)PPRPTLAR ddPTM_K562_Paclitaxel_30min_R1 1 AATAARPPAPPPAPQPPSPTPSPPRPTLAR 30 2 Q96B36-3;Q96B36;H9KV91 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 2 AATAARPPAPPPAPQPPS(0.98)PT(0.081)PS(0.926)PPRPT(0.013)LAR 119.2 1.51E-12 43292000 1669.4 1686.1 2194.1 1936.9 1566 1389.6 1620.7 2300.7 1184.5 2209.8 TRUE FALSE 1692.776751 1870.1941 1640.172319 1812.675903 1779.315713 1636.026049 1928.219364 2105.241174 1298.276517 1759.441547 0.962110252 1.06294756 0.932211884 1.030256394 1.011295724 0.929855301 1.095926925 1.196539424 0.737891247 1 10.78090187 AATESVPCS(ph)PSPLAGEIR ddPTM_K562_Paclitaxel_30min_R1 4 AATESVPCSPSPLAGEIR 18 0 J3QKZ5;J3QS16;Q8N9M1-2;Q8N9M1;J9JIE4 J3QKZ5 C19orf47 Uncharacterized protein C19orf47 1 AATESVPCS(0.789)PS(0.21)PLAGEIR;AATES(0.002)VPCS(0.996)PS(0.003)PLAGEIR;AATES(0.001)VPCS(0.952)PS(0.047)PLAGEIR;AATES(0.081)VPCS(0.893)PS(0.025)PLAGEIR 198.67 3.85E-15 77956000 6972.9 7078.8 8450.6 7802.5 6457.9 5848.1 6826.6 8880.9 7149.5 8707.8 TRUE FALSE 7070.542113 7851.687323 6317.141514 7302.082573 7337.575313 6885.178424 8121.911713 8126.412112 7836.24142 6933.14558 1.019817344 1.13248557 0.911150854 1.053213507 1.058332791 0.993081473 1.171461297 1.172110411 1.130257735 1 12.75929434 -7.760841627 24.99999931 1.132799899 1.029973967 0.280791696 0.069367417 18.47950578 772923.464 0.026741873 0.01943913 1.73E-08 7.760841627 -0.102825932 AATESVPCS(ph)PSPLAGEIRR ddPTM_K562_Paclitaxel_30min_R1 1 AATESVPCSPSPLAGEIRR 19 1 J3QKZ5;J3QS16;Q8N9M1-2;Q8N9M1;J9JIE4 J3QKZ5 C19orf47 Uncharacterized protein C19orf47 1 AATESVPCS(0.992)PS(0.008)PLAGEIRR 104.49 0.00042561 58199000 2881.4 2166.6 2600.7 2216.6 2290.3 2007.6 2021.8 2654.6 2696.6 3209.9 TRUE FALSE 2921.74849 2403.156715 1944.12112 2074.437197 2602.277635 2363.619672 2405.425995 2429.075161 2955.620479 2555.720618 1.143219047 0.940304937 0.760693914 0.811683868 1.018216787 0.924834919 0.941192859 0.950446282 1.156472448 1 11.31951442 -8.636332515 6.780894944 1.076494207 0.927447939 0.227615581 0.104257568 0.312389122 17.06259019 0.075301081 0.027758649 2.31E-09 8.636332515 -0.149046268 AAVGQES(ph)PGGLEAGNAK ddPTM_K562_Paclitaxel_30min_R1 1 AAVGQESPGGLEAGNAK 17 0 Q29RF7 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A 1 AAVGQES(1)PGGLEAGNAK 107.63 0.0010857 120270000 3201 3104.6 5720.7 3925.1 3176.3 2680 2371 3736.3 2744 4482.3 TRUE FALSE 3245.823876 3443.570727 4276.438532 3673.361654 3608.965835 3155.260371 2820.884873 3418.877994 3007.573461 3568.8048 0.909498854 0.96490868 1.198283115 1.029297443 1.011253357 0.88412243 0.790428457 0.957989631 0.842739693 1 11.80122528 -7.219935667 4.506709229 0.885400283 1.031450006 0.344229834 0.087456173 0.234342854 11.03826462 0.030788908 0.029996385 6.03E-08 7.219935667 0.146049723 AAVPSGASTGIYEALELRDNDKTR ddPTM_K562_Paclitaxel_30min_R1 2 AAVPSGASTGIYEALELRDNDKTR 24 2 P06733;K7EM90;A0A2R8Y6G6;K7ERS8;A0A2R8Y879;A0A2R8YEM5;A0A2R8Y798;A0A2R8YEG5 P06733 ENO1 Alpha-enolase;Enolase 0 ; 76.329 0.00021473 26617000 2160.59 1987.39 3799 2482.92 1947.3 1613.86 1975.62 2582.52 3443.1 3325.2 FALSE TRUE 2190.844926 2204.379961 2839.895465 2323.676624 2212.555228 1900.055411 2350.483582 2363.118806 3773.825139 2647.522415 0.827507602 0.832619943 1.072661538 0.877679679 0.835707836 0.717673022 0.887804979 0.89257745 1.425417635 1 11.37042718 -8.665987202 8.467846932 1.210626805 0.867179079 0.544060814 0.126339888 0.17216889 13.27125488 0.083959252 0.031407291 2.16E-09 8.665987202 -0.343447726 AAVQELSS(ph)SILAGEDPEER ddPTM_K562_Paclitaxel_30min_R1 1 AAVQELSSSILAGEDPEER 19 0 P49768;P49768-2;P49768-7;E7ES96 P49768 PSEN1 Presenilin-1;Presenilin-1 NTF subunit;Presenilin-1 CTF subunit;Presenilin-1 CTF12;Presenilin 1 AAVQELS(0.006)S(0.977)S(0.018)ILAGEDPEER 190.37 1.70E-16 11305000 1040.1 1004.4 1197.9 898.3 880.63 905.34 1040.9 1783.8 1774.9 1761.8 TRUE FALSE 1054.664609 1114.063789 895.4753296 840.6870586 1000.586715 1065.889337 1238.405341 1632.255056 1945.387075 1402.744193 0.751858118 0.794203102 0.638373935 0.599316014 0.713306617 0.759860096 0.882844746 1.163615622 1.386843792 1 10.45403623 -8.100434369 2.142382926 1.22006386 0.70283565 0.810170169 0.102522554 0.130230549 1.155578514 0.063064314 0.030618918 7.94E-09 8.100434369 -0.51722821 AAVVT(ph)SPPPTTAPHK ddPTM_K562_Paclitaxel_30min_R1 2 AAVVTSPPPTTAPHK 15 0 E7EV99;E7ENY0;P35611-5;P35611-2;P35611-6;P35611-4;P35611;P35611-3;A0A0A0MSR2;D6RJE2;D6RAH3;D6RF25 E7EV99 ADD1 Alpha-adducin 1 AAVVT(0.603)S(0.397)PPPTTAPHK;AAVVT(0.921)S(0.079)PPPTTAPHK 120.6 0.00060133 477830000 12294.2 10704.9 19000.8 12824.7 10713.6 9036.1 8916.5 13143.5 7819.3 14941.5 TRUE FALSE 12466.35673 11873.69718 14203.81304 12002.18114 12172.9737 10638.52546 10608.35933 12026.87764 8570.378703 11896.4141 1.047908776 0.99809044 1.193957517 1.008890666 1.023247308 0.89426321 0.891727477 1.010966627 0.720416979 1 13.53823915 -7.069575656 2.055944611 0.901812647 1.069144194 0.421187946 0.089145056 0.316717255 2.661900486 0.03208664 0.033558448 8.52E-08 7.069575656 0.167331547 AAVVT(ph)SPPPTTAPHKER ddPTM_K562_Paclitaxel_30min_R1 1 AAVVTSPPPTTAPHKER 17 1 E7EV99;E7ENY0;P35611-5;P35611-2;P35611-6;P35611-4;P35611;P35611-3;A0A0A0MSR2;D6RJE2;D6RAH3;D6RF25 E7EV99 ADD1 Alpha-adducin 1 AAVVT(0.575)S(0.425)PPPTTAPHKER 104.16 0.0085226 215240000 2548.4 2078.9 4000.9 2693.3 1926.2 1569.5 1861.6 2646.6 3219.7 3052.9 TRUE FALSE 2584.085462 2305.881332 2990.823312 2520.563793 2188.581051 1847.828788 2214.828882 2421.75481 3528.966571 2430.717304 1.063095843 0.948642332 1.23042828 1.036962953 0.900384856 0.760198969 0.911183245 0.996312819 1.451821059 1 11.2471664 -11.13980046 4.240768527 0.999995493 1.020035427 0 0.182259294 8.06E-06 1.63E-06 0.183028355 0.044380913 7.25E-12 11.13980046 0.020039934 AAVVTS(ph)PPPTTAPHKER ddPTM_K562_Paclitaxel_30min_R1 1 AAVVTSPPPTTAPHKER 17 1 E7EV99;E7ENY0;P35611-5;P35611-2;P35611-6;P35611-4;P35611;P35611-3;A0A0A0MSR2;D6RJE2;D6RAH3;D6RF25 E7EV99 ADD1 Alpha-adducin 1 AAVVT(0.259)S(0.741)PPPTTAPHKER 90.755 0.0042034 180540000 2970.4 2248.2 4169.2 2868.4 2232.9 2151.3 1716.4 2303 2643.2 2907.3 TRUE FALSE 3011.994764 2493.666079 3116.633896 2684.433662 2537.058783 2532.802849 2042.07794 2107.345775 2897.09117 2314.790664 1.301195314 1.077274985 1.34639989 1.159687441 1.096020829 1.094182247 0.882186874 0.910382873 1.251556443 1 11.17666602 -6.941485482 1.6741037 1.010028153 1.226605888 0.391176088 0.115805125 0.378543159 2.170803984 0.043910341 0.05085547 1.14E-07 6.941485482 0.216577735 AAWEVDSGRR ddPTM_K562_Paclitaxel_30min_R1 1 AAWEVDSGRR 10 1 B7Z9I1;Q5T4U5;P11310;P11310-2 B7Z9I1 ACADM "Medium-chain specific acyl-CoA dehydrogenase, mitochondrial" 0 140.17 0.0014323 5125400 850.02 816.7 1261.5 992.23 696.87 867.43 817.39 1070.5 765.99 1116.4 FALSE TRUE 861.9229025 905.8700679 943.018723 928.5928089 791.7954921 1021.256531 972.4854854 979.5543431 839.566762 888.8770672 0.969676161 1.01911738 1.060910173 1.044680804 0.890781775 1.148928878 1.094060721 1.102013292 0.944525169 1 9.795840096 -7.280707394 24.99835374 1.066541123 1.004455938 0.154158376 0.068753543 1609.829486 2088587.561 0.024355236 0.021506778 5.24E-08 7.280707394 -0.062085185 AAYLNMSEDPSHPS(ph)MALNT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 AAYLNMSEDPSHPSMALNTR 20 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8YDJ9;A0A2R8Y425;A0A2R8YD40;A0A2R8Y4X2;A0A2R8YDW2;A0A2R8Y7I0;A0A2R8Y7M9 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 2 AAY(0.001)LNMS(0.001)EDPS(0.286)HPS(0.795)MALNT(0.916)R 40.285 0.030112 1886900000 1118.8 1258.6 1146.2 1119.3 1159.4 953.23 1048.4 1449 1101.5 1287 TRUE FALSE 1134.466652 1396.018204 856.827634 1047.513108 1317.329909 1122.271956 1247.328427 1325.898406 1207.303997 1024.708694 1.107111376 1.362356163 0.836167039 1.022254534 1.28556527 1.09521073 1.217251727 1.293927156 1.178192402 1 10.00099812 -6.750463303 24.99763598 1.190841582 1.084442194 0.092520973 0.144665283 523.8771501 1193106.381 0.043578456 0.055712299 1.78E-07 6.750463303 -0.106399389 ACAS(ph)PSAQVEGS(ph)PVAGSDGSQPAVK ddPTM_K562_Paclitaxel_30min_R1 1 ACASPSAQVEGSPVAGSDGSQPAVK 25 0 F8WDB4;Q9UFC0 F8WDB4 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 2 ACAS(0.772)PS(0.228)AQVEGS(1)PVAGSDGSQPAVK 100.88 3.49E-05 11190000 1754 1664 2860.1 2125.6 1530.4 1396 1404.1 2088.3 1420.4 2116.3 TRUE FALSE 1778.561412 1845.681147 2138.032382 1989.27353 1738.86639 1643.560999 1670.520645 1910.88588 1556.835767 1684.996898 1.055528003 1.095361748 1.268864283 1.180579936 1.031970084 0.975408917 0.991408736 1.13405899 0.923939841 1 10.71853022 -6.823020174 5.883887609 1.012169157 1.154516454 0.478418676 0.071985914 0.186153793 12.52934554 0.023292915 0.026789087 1.50E-07 6.823020174 0.142347297 ACFHCET(ph)CKMTLNMKNY(ph)KGY(ph)EK ddPTM_K562_Paclitaxel_30min_R1 1 ACFHCETCKMTLNMKNYKGYEK 22 3 Q14847;Q14847-2;F6S2S5;K7ESD6 Q14847 LASP1 LIM and SH3 domain protein 1 3 ACFHCET(0.554)CKMT(0.554)LNMKNY(0.896)KGY(0.995)EK 42.806 0.0227 58813000 0 0 0 0 0 133.82 0 0 0 0 TRUE FALSE 0 0 0 0 0 157.5510981 0 0 0 0 0 ACPGPPPPS(ph)PEPLAR ddPTM_K562_Paclitaxel_30min_R1 4 ACPGPPPPSPEPLAR 15 0 A0A087WSV0;Q9HB09-3;Q9HB09 A0A087WSV0 BCL2L12 Bcl-2-like protein 12 1 ACPGPPPPS(1)PEPLAR;ACPGPPPPS(1)PEPLAR;ACPGPPPPS(1)PEPLAR;ACPGPPPPS(1)PEPLAR 212.03 1.31E-18 291544000 5761.6 5195.6 6995.5 5728.3 4984.41 5101.6 4812.39 5882.3 5864.3 6006.4 TRUE FALSE 5842.280176 5762.873178 5229.399506 5360.912477 5663.371029 6006.29713 5725.51588 5382.561899 6427.592217 4782.292383 1.221648471 1.205044091 1.093492218 1.120992204 1.18423772 1.255945193 1.197232503 1.1255192 1.344039992 1 12.22348662 -5.540082217 24.96689528 1.171561342 1.21749747 0.043070272 0.088267575 775.8358114 1125944.736 0.021712233 0.05747878 2.88E-06 5.540082217 0.045936128 ACQSIYPLHDVFVR ddPTM_K562_Paclitaxel_30min_R1 2 ACQSIYPLHDVFVR 14 0 D6R9B6;H0Y9Y4;D6RAT0;P61247;D6RG13;D6RB09 D6R9B6 RPS3A 40S ribosomal protein S3a 0 ; 127.3 0.00062695 15509000 2862.7 3163.3 2583.3 2953.5 2018.57 2224.22 4688.9 5670.4 3867.6 6564.7 FALSE TRUE 2902.786632 3508.679792 1931.113965 2764.075729 2293.533409 2618.654187 5578.594297 5188.664126 4239.100261 5226.810537 0.555364808 0.671285054 0.369463165 0.528826463 0.438801711 0.50100423 1.067303714 0.992701781 0.811030021 1 12.35171515 -7.754367253 24.99992488 0.96715071 0.509209599 0.848510225 0.094590458 60.14864066 212625.8233 0.037469638 0.028393184 1.76E-08 7.754367253 -0.457941112 ACREGS(ph)NPGLLR ddPTM_K562_Paclitaxel_30min_R1 1 ACREGSNPGLLR 12 1 A0A2R8YFU1 A0A2R8YFU1 1 ACREGS(1)NPGLLR 84.615 0.017668 0 498.9 553.92 727.47 873.76 541.16 504.45 436.69 518.72 707.16 810.3 TRUE FALSE 505.8861392 614.3988588 543.8112013 817.7209444 614.8751539 593.9071247 519.5496478 474.6514983 775.0858777 645.1604152 0.784124579 0.952319523 0.842908505 1.267469183 0.953057781 0.920557292 0.805303046 0.73571082 1.20138474 1 9.333514112 -5.947098779 0.008125783 1.858111229 2.65E-05 0.025389246 0.16313548 62263.88064 100.0691101 10916.59517 11978.2404 1.13E-06 5.947098779 -1.858084683 ACRPPGS(ph)PGRAPPPTPAPSGCDPR ddPTM_K562_Paclitaxel_30min_R1 2 ACRPPGSPGRAPPPTPAPSGCDPR 24 2 O95685 O95685 PPP1R3D Protein phosphatase 1 regulatory subunit 3D 1 ACRPPGS(0.999)PGRAPPPTPAPS(0.001)GCDPR;ACRPPGS(1)PGRAPPPTPAPSGCDPR 87.208 0.0014159 101251000 3626 3247.1 3858.3 3651.5 3288.6 3362 3456.9 4078.7 3490.9 3571.8 TRUE FALSE 3676.775187 3601.629359 2884.224446 3417.309134 3736.562996 3958.203495 4112.828729 3732.188977 3826.216543 2843.865199 1.29287956 1.266455724 1.014191688 1.201642446 1.313902993 1.391839352 1.446210858 1.312364938 1.345428237 1 11.47363737 -6.762040183 4.916306522 1.330041365 1.184748557 0.117243213 0.132049265 0.294925279 19.15727984 0.039858886 0.048626956 1.73E-07 6.762040183 -0.145292808 ACSMPQELPQS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 ACSMPQELPQSPR 13 0 Q8N5J2;Q8N5J2-3 Q8N5J2 FAM63A Protein FAM63A 1 ACSMPQELPQS(1)PR;ACS(0.006)MPQELPQS(0.994)PR 172.09 6.36E-05 25019000 2904.7 2742 3214.5 2703 2170.7 2339.8 2351.6 2250.2 2971.8 3282.1 TRUE FALSE 2945.374762 3041.380833 2402.959719 2529.641678 2466.38609 2754.730678 2797.803824 2059.031465 3257.254668 2613.206218 1.127111493 1.163850297 0.91954462 0.968022217 0.943816096 1.054157402 1.070640275 0.787933019 1.246459099 1 11.35160526 -5.74838366 24.98294719 0.992724542 1.145480983 0.214076361 0.111915602 315.7390073 604176.0662 0.026650634 0.069569523 1.78E-06 5.74838366 0.152756441 ADAASSLTVDVT(ph)PPTAK ddPTM_K562_Paclitaxel_30min_R1 1 ADAASSLTVDVTPPTAK 17 0 Q9H8Y8-2;Q9H8Y8;Q9H8Y8-3 Q9H8Y8-2 GORASP2 Golgi reassembly-stacking protein 2 1 ADAASSLTVDVT(0.982)PPT(0.017)AK 212.95 1.15E-22 13036000 1505.8 1195.7 2681.2 1488.9 1259.8 1016.4 1083.6 1622.6 1441.1 1966.9 TRUE FALSE 1526.885846 1326.25057 2004.297899 1393.408618 1431.406089 1196.644269 1289.207443 1484.750002 1579.524094 1566.0447 0.974995059 0.846879128 1.279847184 0.889762992 0.914026329 0.764118846 0.823225188 0.948089158 1.008607285 1 10.61290968 -4.896351827 18.77416986 0.93719447 4.31269186 0.004559639 0.134335937 2661.750748 489153.4127 0.03371895 5591.155661 1.27E-05 4.896351827 3.37549739 ADADPSPT(ph)SPPTAR ddPTM_K562_Paclitaxel_30min_R1 1 ADADPSPTSPPTAR 14 0 Q9NWZ5;Q9NWZ5-3;Q9NWZ5-2 Q9NWZ5 UCKL1 Uridine-cytidine kinase-like 1 1 ADADPS(0.021)PT(0.486)S(0.486)PPT(0.007)AR 167.03 0.00014364 24239000 2447.8 2924.5 4304.5 3313.7 2462.7 2806.6 2700.2 3488.7 2046.5 3650.8 TRUE FALSE 2482.076752 3243.8068 3217.775738 3101.174114 2798.161434 3304.311103 3212.548854 3192.313159 2243.075469 2906.764956 0.853896613 1.115950842 1.106995504 1.066881623 0.962637666 1.136765839 1.105197325 1.098235739 0.771674182 1 11.5051987 -8.745048952 24.99961871 0.885837031 1.061137092 0.331207408 0.096382056 221.8022937 338308.6947 0.062894613 0.023617139 1.80E-09 8.745048952 0.175300062 ADADPSPTS(ph)PPTAR ddPTM_K562_Paclitaxel_30min_R1 1 ADADPSPTSPPTAR 14 0 Q9NWZ5;Q9NWZ5-3;Q9NWZ5-2 Q9NWZ5 UCKL1 Uridine-cytidine kinase-like 1 1 ADADPS(0.228)PT(0.166)S(0.606)PPTAR 127.03 0.00032565 21526000 3670.3 3302.8 4884 3981.5 3615.4 3219.4 3001.7 4281.7 2509 4383.7 TRUE FALSE 3721.695524 3663.410873 3650.973795 3726.144411 4107.878689 3790.315387 3571.256905 3917.942859 2750.000661 3490.299534 1.066296886 1.049597846 1.046034519 1.067571529 1.176941592 1.085957051 1.023194964 1.122523388 0.787898183 1 11.76913514 -8.749249425 24.99999407 0.89394906 1.078788374 0.583735435 0.062760837 128.4692427 263477.0549 0.041406387 0.01539501 1.78E-09 8.749249425 0.184839314 ADAPDAGAQS(ph)DSELPSYHQNDVSLDR ddPTM_K562_Paclitaxel_30min_R1 4 ADAPDAGAQSDSELPSYHQNDVSLDR 26 0 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 ADAPDAGAQS(0.999)DS(0.001)ELPSYHQNDVSLDR;ADAPDAGAQS(0.942)DS(0.058)ELPSYHQNDVSLDR;ADAPDAGAQS(0.766)DS(0.234)ELPSYHQNDVSLDR;ADAPDAGAQS(0.992)DS(0.008)ELPSYHQNDVSLDR 176.53 1.64E-28 1211000000 6103.32 5879.21 7820.34 6640.8 5903.42 6119.33 5410.16 7109.13 5143.18 7610.9 TRUE FALSE 6188.78531 6521.12203 5845.998446 6214.888811 6707.56575 7204.507256 6436.709617 6505.165033 5637.205419 6059.794402 1.021286351 1.076129254 0.964718942 1.025594005 1.106896588 1.188902919 1.06219934 1.073495997 0.930263478 1 12.56505313 -5.221986361 19.60683558 1.053325278 1.021284948 0.006603404 0.069903298 6032.827166 2997101.485 0.01832461 2.568518962 6.00E-06 5.221986361 -0.03204033 ADEGISFR ddPTM_K562_Paclitaxel_30min_R1 2 ADEGISFR 8 0 A0A0A0MSI0;Q06830 A0A0A0MSI0 PRDX1 Peroxiredoxin-1 0 ; 148.04 9.13E-05 90954000 5099.3 5147.8 6283.4 5110.8 4483.9 4685.6 5378.9 6776.3 3601.9 6994.5 FALSE TRUE 5170.705933 5709.854213 4697.077958 4783.016163 5094.683093 5516.525371 6399.518195 6200.611019 3947.878589 5569.017061 0.928477302 1.025289409 0.843430341 0.858861826 0.914826268 0.990574335 1.149128854 1.113412107 0.70890043 1 12.443207 -7.303871029 5.004612055 1.01043989 0.913130661 0.089308267 0.119022129 0.458688464 28.14490654 0.043258768 0.038743203 4.97E-08 7.303871029 -0.097309229 ADFREPNAEVPRPIPHIGPDYIPTEEERR ddPTM_K562_Paclitaxel_30min_R1 1 ADFREPNAEVPRPIPHIGPDYIPTEEERR 29 3 Q9NX40;D6RG39;Q9NX40-4;Q9NX40-2;Q9NX40-3;D6RIT9;D6RF07;D6R918;D6RA54;D6RDI5;D6RBC5;D6RC55 Q9NX40 OCIAD1 OCIA domain-containing protein 1 0 46.656 0.0093381 20573000 626.71 601.09 758.83 580.6 475.79 608.01 692.93 885.83 539.98 840.29 FALSE TRUE 635.4858736 666.719039 567.2539814 543.3629147 540.6006532 715.8320366 824.4098502 810.5732123 591.8474917 669.0384368 0.949849573 0.996533237 0.847864562 0.812155005 0.808026301 1.069941572 1.232230923 1.211549543 0.88462405 1 9.385945287 -7.362921886 5.787601937 1.105805528 0.883912186 0.446236062 0.108144284 0.210515555 9.954044394 0.040146123 0.035272112 4.34E-08 7.362921886 -0.221893341 ADGGTGDS(ph)SPSPGSSLPSPLSDPR ddPTM_K562_Paclitaxel_30min_R1 2 ADGGTGDSSPSPGSSLPSPLSDPR 24 0 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 1 ADGGT(0.019)GDS(0.507)S(0.454)PS(0.014)PGS(0.003)S(0.003)LPSPLSDPR;ADGGT(0.026)GDS(0.326)S(0.277)PS(0.047)PGS(0.213)S(0.073)LPS(0.02)PLS(0.018)DPR 57.41 0.025697 0 464.47 517.74 792.66 710.53 366.87 324.89 327.56 641.66 503.81 625.06 TRUE FALSE 470.974013 574.2686041 592.5431795 664.959786 416.8439052 382.5046798 389.7128 587.1469779 552.2032016 497.6724289 0.946353436 1.153908818 1.190628906 1.336139491 0.837586896 0.768587243 0.783070906 1.179786027 1.109571617 1 8.959052654 -6.773993902 24.98897855 0.938362615 1.158973578 0.313007353 0.152353152 296.5085012 590179.3756 0.052131822 0.059511997 1.68E-07 6.773993902 0.220610963 ADGYEPPVQES(ph)V ddPTM_K562_Paclitaxel_30min_R1 2 ADGYEPPVQESV 12 0 D6R9B6;H0Y9Y4;D6RAT0;P61247 D6R9B6 RPS3A 40S ribosomal protein S3a 1 ADGYEPPVQES(1)V;ADGYEPPVQES(1)V 179.59 0.00055607 51801000 7478.7 7219.3 9158.7 7733.2 6849.4 6429.5 6898.8 8049.7 8276.1 9163.7 TRUE FALSE 7583.424874 8007.527588 6846.472912 7237.227165 7782.404241 7569.68155 8207.811286 7365.82774 9071.056384 7296.13291 1.039375922 1.097502977 0.938370092 0.991926443 1.066647817 1.037492278 1.124953641 1.009552297 1.243269071 1 12.8329163 -7.439701862 1.592871335 1.096046422 1.020429387 0.152695957 0.07449884 0.717642856 3.651031907 0.034244777 0.027117963 3.63E-08 7.439701862 -0.075617035 ADHGVPLPGS(ph)PPPTVALPLPSR ddPTM_K562_Paclitaxel_30min_R1 1 ADHGVPLPGSPPPTVALPLPSR 22 0 A0A1W2PRX0;V9GYJ6;V9GY36;Q9UK80-2;Q9UK80-3;Q9UK80 A0A1W2PRX0 USP21 Ubiquitin carboxyl-terminal hydrolase 21 1 ADHGVPLPGS(1)PPPTVALPLPSR 75.703 0.0091244 0 614.26 642.44 675.9 816.34 514.63 615.17 690.81 786.42 468.21 1028 TRUE FALSE 622.8615352 712.5837718 505.2606856 763.9836062 584.7313188 724.2617621 821.8875912 719.6087123 513.1836625 818.4930357 0.760985748 0.870604563 0.617306029 0.933402696 0.714399871 0.884872235 1.004147324 0.879187337 0.626985985 1 9.676826331 -7.29120618 23.7212432 0.879307113 0.783967217 0.136266796 0.125231585 841.2692188 670405.979 0.043465853 0.038340468 5.11E-08 7.29120618 -0.095339895 ADHRS(ph)SPNVANQPPS(ph)PGGK ddPTM_K562_Paclitaxel_30min_R1 1 ADHRSSPNVANQPPSPGGK 19 1 A8MQ02;J3KN01;P55196;P55196-5;P55196-3;P55196-1;Q5TIG5;P55196-2;P55196-6 A8MQ02 MLLT4 Afadin 2 ADHRS(0.786)S(0.214)PNVANQPPS(1)PGGK 111.09 0.00038169 15553000 2076.6 1705.3 3341.7 2235 1571.2 1374.7 1351.6 1928.6 1922.6 2496.1 TRUE FALSE 2105.678807 1891.490421 2498.046505 2091.657103 1785.224041 1618.483743 1608.059044 1764.753392 2107.27432 1987.39345 1.059517836 0.951744317 1.25694613 1.052462512 0.898274089 0.814375102 0.809129689 0.887973839 1.060320653 1 10.9566618 -6.721672184 4.895943946 0.895488692 1.086817053 0.401134615 0.100211792 0.190691528 10.44370345 0.031333077 0.039684249 1.90E-07 6.721672184 0.191328362 ADHRS(ph)SPNVANQPPSPGGK ddPTM_K562_Paclitaxel_30min_R1 1 ADHRSSPNVANQPPSPGGK 19 1 A8MQ02;J3KN01;P55196;P55196-5;P55196-3;P55196-1;Q5TIG5;P55196-2;P55196-6 A8MQ02 MLLT4 Afadin 1 ADHRS(0.638)S(0.362)PNVANQPPSPGGK 127.54 1.06E-06 9545400 2802.3 2149.8 4241.4 3138.4 2884.7 2347.3 2186 2808.9 2343.8 3350 TRUE FALSE 2841.540846 2384.522434 3170.606113 2937.117071 3277.644978 2763.560697 2600.782088 2570.266412 2568.932462 2667.268161 1.065337519 0.893994263 1.188709167 1.101170521 1.228839689 1.036101558 0.975073345 0.963632547 0.963132429 1 11.38114716 -7.56499206 5.098279762 0.974770305 1.093758862 0.315716618 0.083143076 0.259771911 15.88202425 0.034192114 0.026625604 2.72E-08 7.56499206 0.118988557 ADHRSS(ph)PNVANQPPS(ph)PGGK ddPTM_K562_Paclitaxel_30min_R1 2 ADHRSSPNVANQPPSPGGK 19 1 A8MQ02;J3KN01;P55196;P55196-5;P55196-3;P55196-1;Q5TIG5;P55196-2;P55196-6 A8MQ02 MLLT4 Afadin 2 ADHRS(0.449)S(0.551)PNVANQPPS(1)PGGK;ADHRS(0.317)S(0.683)PNVANQPPS(1)PGGK 123.71 3.70E-06 33774000 6503.1 5701.9 11150.6 7153.4 4878.6 4618.8 4396.9 6047.7 6205 7360 TRUE FALSE 6594.163464 6324.452725 8335.493121 6694.612941 5543.147915 5437.879329 5231.188822 5533.910136 6801.017975 5860.02796 1.125278498 1.079252995 1.422432312 1.142419966 0.945925165 0.927961328 0.892690079 0.94434876 1.160577735 1 12.51669183 -6.659915283 4.748194835 0.969330483 1.208261896 0.489195743 0.107952743 0.178877995 6.76956379 0.033441341 0.043333213 2.19E-07 6.659915283 0.238931414 ADKDYHFKVDNDENEHQLSLR ddPTM_K562_Paclitaxel_30min_R1 1 ADKDYHFKVDNDENEHQLSLR 21 2 P06748-2;P06748;P06748-3 P06748-2 NPM1 Nucleophosmin 0 54.668 0.014444 18288000 1187.1 1080.8 2800 1626.3 945.67 754.29 1401 1842.4 1503.5 2983.4 FALSE TRUE 1203.723063 1198.805399 2093.10537 1521.996397 1074.486264 888.0527407 1666.832436 1685.87662 1647.917893 2375.381442 0.506749376 0.504679113 0.881166003 0.640737681 0.45234262 0.373856899 0.701711484 0.7097288 0.693748744 1 11.21394349 -9.19732016 0.939530966 0.996533911 0.579535483 0.463012909 0.135322469 0.824303662 1.49871863 0.141953016 0.047716115 6.35E-10 9.19732016 -0.416998428 ADLGPGS(ph)PPWAVK ddPTM_K562_Paclitaxel_30min_R1 1 ADLGPGSPPWAVK 13 0 A0A087WVC5;A0A0C4DH65;A5PL33-3;A5PL33-2;A5PL33 A0A087WVC5 KRBA1 Protein KRBA1 1 ADLGPGS(1)PPWAVK 117.7 0.002589 15488000 2968.8 2883.7 4813.6 3053.6 2009.2 1904.3 2083.4 2743.8 2251.5 3831.1 TRUE FALSE 3010.37236 3198.552118 3598.347146 2857.755763 2282.887056 2242.000867 2478.714274 2510.697064 2467.766635 3050.319717 0.986903879 1.048595693 1.179662291 0.936870895 0.748409107 0.735005204 0.812608023 0.823093084 0.809019009 1 11.57474475 -6.524987118 5.127128547 0.809237462 1.069254055 0.65658798 0.08090245 0.098598627 7.832262475 0.023328206 0.032174088 2.99E-07 6.524987118 0.260016593 ADLINNLGTIAK ddPTM_K562_Paclitaxel_30min_R1 1 ADLINNLGTIAK 12 0 P08238;Q14568;Q58FF8;P07900;P07900-2 P08238;P07900 HSP90AB1;HSP90AA2P;HSP90AB2P;HSP90AA1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2;Heat shock protein HSP 90-alpha 0 121.68 0.014677 3790700 702.24 560.46 1080.5 669.96 477.56 616.98 511.74 832.25 897.63 1066.5 FALSE TRUE 712.0735266 621.6529182 807.7144115 626.9917642 542.6117572 726.3927402 608.8399935 761.5451678 983.8513722 849.1467146 0.838575377 0.732091295 0.951207133 0.738378602 0.639008251 0.855438439 0.717002119 0.896835794 1.158635316 1 9.729870032 -8.565753442 4.664657361 1.074140064 0.782912861 0.636764417 0.089158705 0.123806052 6.056733482 0.062800221 0.022767331 2.72E-09 8.565753442 -0.291227203 ADLNQGIGEPQS(ph)PSR ddPTM_K562_Paclitaxel_30min_R1 2 ADLNQGIGEPQSPSR 15 0 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 ADLNQGIGEPQS(0.998)PS(0.002)R;ADLNQGIGEPQS(0.734)PS(0.266)R 211.45 2.73E-14 24314000 2170.3 2142.6 3549.5 3171.4 2298.7 2510.8 1839.18 2536.41 1889.9 2883.3 TRUE FALSE 2200.690896 2376.536314 2653.384825 2968.000599 2611.821857 2956.055127 2188.154804 2320.926139 2071.433339 2295.681877 0.958621888 1.035220227 1.155815556 1.29286232 1.137710709 1.287658868 0.953161161 1.010996411 0.902317242 1 11.16470702 -7.792087166 24.99796298 0.967534914 1.146603556 0.440459885 0.098284485 212.8204488 173585.7184 0.044247552 0.029835272 1.61E-08 7.792087166 0.179068642 ADLNQGIGEPQSPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 ADLNQGIGEPQSPSR 15 0 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 ADLNQGIGEPQS(0.011)PS(0.989)R;ADLNQGIGEPQS(0.406)PS(0.594)R 203.06 3.07E-10 76101000 3503.4 2820.4 4296.5 3625.3 3228.6 2786.5 3200.4 4138 2460 3852.9 TRUE FALSE 3552.458409 3128.34081 3211.795437 3392.789484 3668.389981 3280.646651 3807.659193 3786.451071 2696.293992 3067.676865 1.158028882 1.019775207 1.046979711 1.105980073 1.195820206 1.0694238 1.241219125 1.23430571 0.878936769 1 11.58293081 -4.840292527 18.27290564 1.101436855 48.05646979 0.023408901 0.107970755 1645.493845 188276.8473 0.025782812 125.7587971 1.44E-05 4.840292527 46.95503293 ADLNQGIGEPQSPS(ph)RR ddPTM_K562_Paclitaxel_30min_R1 1 ADLNQGIGEPQSPSRR 16 1 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 ADLNQGIGEPQS(0.036)PS(0.964)RR 119.62 0.0001962 67190000 507.09 685.06 841.55 557.71 661.53 644.53 603.29 776.42 617.03 785.24 TRUE FALSE 514.1908245 759.8571675 629.0902943 521.9409768 751.6415858 758.8283458 717.7611281 710.4582747 676.2984885 625.207657 0.822432065 1.215367661 1.006210156 0.83482819 1.202227096 1.213722093 1.148036369 1.136355684 1.081718179 1 9.288191637 -6.786837679 24.99995183 1.14221463 0.989863573 0.304419075 0.116557512 294.2265757 289610.2895 0.03596798 0.040799102 1.63E-07 6.786837679 -0.152351057 ADPGEDDLGGTVDIVES(ph)EPENDHGVELLDQNSSIRVPR ddPTM_K562_Paclitaxel_30min_R1 2 ADPGEDDLGGTVDIVESEPENDHGVELLDQNSSIRVPR 38 1 P17010-2;P08048-2;P08048-3;P08048;P17010;P17010-3 P17010-2 ZFX;ZFY Zinc finger X-chromosomal protein;Zinc finger Y-chromosomal protein 1 ADPGEDDLGGT(0.001)VDIVES(0.998)EPENDHGVELLDQNS(0.001)SIRVPR;ADPGEDDLGGT(0.002)VDIVES(0.998)EPENDHGVELLDQNSSIRVPR 108.08 1.07E-20 79413000 2010.87 1722.38 2444.77 1763.74 1415.6 1779.08 1393.38 1705.16 3889.2 1971.43 TRUE FALSE 2039.028384 1910.435273 1827.557577 1650.621611 1608.428686 2094.574858 1657.766581 1560.296015 4262.775037 1569.651484 1.299032559 1.217107933 1.164307871 1.05158478 1.024704339 1.334420335 1.056136727 0.994039779 2.71574619 1 10.61622855 ADPSLLGFSVNAS(ph)SER ddPTM_K562_Paclitaxel_30min_R1 2 ADPSLLGFSVNASSER 16 0 I1E4Y6;Q6Y7W6;Q6Y7W6-4;Q6Y7W6-5;Q6Y7W6-3 I1E4Y6;Q6Y7W6-3 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 ADPSLLGFSVNAS(0.665)S(0.335)ER;ADPSLLGFSVNAS(0.918)S(0.082)ER 184.92 3.08E-10 16477700 1251.6 1256.49 1889.26 1533.56 1325.56 1240.86 1064.88 1321.54 898.66 1258.13 TRUE FALSE 1269.126262 1393.677827 1412.292947 1435.204326 1506.123714 1460.909098 1266.935421 1209.266928 984.9803083 1001.722415 1.266944058 1.391281463 1.409864574 1.432736558 1.503534004 1.458397133 1.264756984 1.20718765 0.98328668 1 9.968267067 -8.407643289 1.540083894 0.985004502 1.412073271 0.854083827 0.066724865 0.151374372 0.633365745 0.060659007 0.021197388 3.91E-09 8.407643289 0.42706877 ADRDESSPYAAMLAAQDVAQR ddPTM_K562_Paclitaxel_30min_R1 2 ADRDESSPYAAMLAAQDVAQR 21 1 P62263;A0A2R8Y811;E5RH77 P62263 RPS14 40S ribosomal protein S14 0 ; 116.51 4.56E-05 49148000 2253.9 2112.74 2580 2371 2343.2 1754.32 1770.92 2792.7 2349.6 2713.3 FALSE TRUE 2285.461554 2343.416098 1928.647091 2218.934672 2662.383511 2065.42402 2106.942825 2555.442704 2575.289578 2160.327971 1.057923419 1.084750154 0.892756617 1.027128613 1.232397834 0.956069656 0.975288407 1.182895717 1.19208269 1 11.07703464 -8.26666451 24.98361628 1.140616903 1.033540268 0.152301686 0.098095253 761.8856753 3642869.132 0.052639374 0.026482157 5.41E-09 8.26666451 -0.107076635 ADREVQAEQPSSS(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 1 ADREVQAEQPSSSSPR 16 1 Q9Y388;A0A1W2PP04 Q9Y388 RBMX2 "RNA-binding motif protein, X-linked 2" 1 ADREVQAEQPS(0.001)S(0.011)S(0.494)S(0.494)PR 103.73 0.0016001 105510000 1763.5 1490.4 1891.6 1770.3 1501.2 1098.7 990.09 1988.1 1716.2 1740.6 TRUE FALSE 1788.194441 1653.126912 1414.042185 1656.760882 1705.688856 1293.539018 1177.954409 1819.198496 1881.048678 1385.864765 1.290309478 1.192848649 1.020332013 1.195470816 1.23077583 0.933380407 0.84997789 1.312681109 1.357310415 1 10.43657077 -5.510509731 5.507449444 1.114291318 1.270812181 0.112574963 0.156059847 0.39031794 39.39889981 0.042344924 0.144899443 3.09E-06 5.510509731 0.156520863 ADREVQAEQPSSSS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 ADREVQAEQPSSSSPR 16 1 Q9Y388;A0A1W2PP04 Q9Y388 RBMX2 "RNA-binding motif protein, X-linked 2" 1 ADREVQAEQPS(0.004)S(0.003)S(0.247)S(0.747)PR 92.671 0.005901 129390000 1182.4 1336.7 1601 1639.4 1166.8 1353.7 799.15 1826 1191.7 1594.2 TRUE FALSE 1198.957248 1482.645426 1196.807749 1534.256222 1325.737914 1593.759688 950.7845407 1670.869902 1306.16811 1269.301165 0.944580594 1.168080096 0.942887143 1.208740892 1.044462851 1.25561981 0.749061426 1.316369943 1.029045073 1 10.3098187 -5.233527349 22.2169891 1.083123231 0.944579703 0.060993168 0.158034353 5877.787684 4678171.237 0.036123232 2.53306123 5.84E-06 5.233527349 -0.138543528 ADS(ph)GYLFS(ph)GS(ph)RPPS(ph)QVS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 ADSGYLFSGSRPPSQVSR 18 1 Q5SNT2;H0Y994 Q5SNT2 TMEM201 Transmembrane protein 201 5 ADS(0.869)GY(0.394)LFS(0.868)GS(0.868)RPPS(1)QVS(1)R 72.585 0.012096 0 347.58 405.58 402.62 495.43 410.37 205.74 437.15 465.64 192.43 412.86 TRUE FALSE 352.4471924 449.862596 300.9736015 463.6553373 466.2693416 242.2251003 520.0969304 426.0809756 210.9137613 328.7189054 1.072184126 1.368532776 0.915595655 1.410491851 1.418443947 0.736876086 1.582193546 1.296186403 0.64162346 1 8.360710621 -8.751736136 24.9986861 0.8208117 1.227788267 0.287859427 0.254304802 215.2087191 554457.0216 0.169722353 0.06236309 1.77E-09 8.751736136 0.406976568 ADS(ph)LLAVVK ddPTM_K562_Paclitaxel_30min_R1 1 ADSLLAVVK 9 0 Q15424-2;Q15424;Q15424-3;Q15424-4;Q14151 Q15424-2;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 ADS(1)LLAVVK 123.96 0.0019157 4006500 1021.7 889.03 1499.2 1159.1 952.88 938.58 717.67 1378.3 867.78 1821.6 TRUE FALSE 1036.006952 986.0973019 1120.708418 1084.760514 1082.678388 1105.023985 853.844136 1261.204812 951.1341463 1450.35692 0.714311724 0.679899746 0.772712153 0.747926596 0.746491001 0.761897964 0.588713112 0.869582373 0.655793159 1 10.50219226 -11.58686006 2.976795266 1.015968339 0.728800189 0.568639391 0.071468676 47546701.7 50708184.8 5976474.418 0.017019592 2.59E-12 11.58686006 -0.28716815 ADS(ph)PVNGLPK ddPTM_K562_Paclitaxel_30min_R1 2 ADSPVNGLPK 10 0 A0A0A0MSF3;Q96S94-3;Q96S94 A0A0A0MSF3 CCNL2 Cyclin-L2 1 ADS(1)PVNGLPK;ADS(1)PVNGLPK 113.61 0.0044377 152479000 7953.1 6384.1 16766.3 9789.5 6735.3 6282.3 5560.5 8937.5 8016.6 10848.1 TRUE FALSE 8064.467937 7081.137628 12533.4402 9161.645286 7652.76189 7396.377697 6615.575847 8178.203589 8786.630249 8637.251265 0.933684536 0.819836938 1.451091304 1.060713068 0.886018208 0.856334668 0.765935324 0.946852574 1.017294736 1 13.07635654 -6.73999608 7.519234018 0.899213955 1.076894996 0.169552974 0.165215053 0.299334024 71.84012741 0.051928197 0.065381511 1.82E-07 6.73999608 0.177681041 ADSAYSSFSAAS(ph)GGPEPR ddPTM_K562_Paclitaxel_30min_R1 1 ADSAYSSFSAASGGPEPR 18 0 C9JXU1;A6NN40;Q2M3G4-2;Q2M3G4 C9JXU1 SHROOM1 Protein Shroom1 1 ADSAYS(0.01)S(0.029)FS(0.023)AAS(0.938)GGPEPR 84.403 0.0063417 8837900 897.41 974.34 1099.1 889.28 909.15 728.21 611.48 1128.6 1206.5 1057.6 TRUE FALSE 909.9765087 1080.721736 821.6186115 832.2455611 1032.991622 857.3478189 727.5051379 1032.718385 1322.389716 842.0605395 1.080654497 1.283425224 0.975723921 0.988344094 1.226742703 1.018154609 0.863958235 1.226418217 1.570421192 1 9.717780149 -8.514188654 24.8727901 1.322946964 1.067634878 0.224904334 0.172120784 493.5184125 1412572.108 0.102281058 0.042850197 3.06E-09 8.514188654 -0.255312086 ADSGYLFSGSRPPS(ph)QVSR ddPTM_K562_Paclitaxel_30min_R1 2 ADSGYLFSGSRPPSQVSR 18 1 Q5SNT2;H0Y994 Q5SNT2 TMEM201 Transmembrane protein 201 1 ADSGYLFS(0.071)GS(0.008)RPPS(0.853)QVS(0.068)R;ADSGYLFS(0.029)GS(0.004)RPPS(0.804)QVS(0.162)R 131.84 3.02E-08 15860400 2968.82 2960.52 3929.36 3598.6 2655.68 2519.9 2735.57 3434.81 2720.07 3554.28 TRUE FALSE 3010.39264 3283.759585 2937.34447 3367.801903 3017.428577 2966.768884 3254.630127 3143.001451 2981.344877 2829.915785 1.063774638 1.160373606 1.037961796 1.190071422 1.066260909 1.048359425 1.150080205 1.11063427 1.053510105 1 11.46654341 -8.995035937 3.287274397 1.000399412 1.104378798 0.316225467 0.048280921 0.246827875 6.554834386 0.043944632 0.011691436 1.01E-09 8.995035937 0.103979387 ADTS(ph)QEICSPR ddPTM_K562_Paclitaxel_30min_R1 1 ADTSQEICSPR 11 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 ADT(0.056)S(0.943)QEICSPR 123.95 0.0020865 28983000 1857.7 1947.5 2890.2 2365.4 1933.2 2022.1 2151.5 2366.4 1665.3 2367 TRUE FALSE 1883.713531 2160.134636 2160.533264 2213.693831 2196.534569 2380.691043 2559.735893 2165.359549 1825.259506 1884.604101 0.99952745 1.146200751 1.14641227 1.174620086 1.165515117 1.263231382 1.358235341 1.148973171 0.968510843 1 10.88004577 -8.707392237 5.262074052 0.983431442 1.183623613 0.439198011 0.08651946 0.177656864 10.07661711 0.070250334 0.023984846 1.96E-09 8.707392237 0.200192171 ADVVPQQADPEFPRAS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 ADVVPQQADPEFPRASPR 18 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 ADVVPQQADPEFPRAS(1)PR;ADVVPQQADPEFPRAS(1)PR;ADVVPQQADPEFPRAS(1)PR;ADVVPQQADPEFPRAS(1)PR 120.99 3.78E-05 441523000 9764.2 8819 11950.2 9503.8 8851.9 8378.2 7716.2 10498.4 9457.1 11204 TRUE FALSE 9900.928925 9781.888244 8933.224212 8894.268805 10057.67864 9863.956134 9180.308669 9606.495391 10365.49671 8920.61865 1.109892633 1.096548191 1.001413082 0.997046186 1.127464253 1.105747989 1.029111212 1.076886679 1.161970612 1 13.12292805 -6.774090788 24.99238787 1.085764391 1.050904382 0.077378149 0.054316307 637.3447327 1259047.882 0.0174193 0.019872064 1.68E-07 6.774090788 -0.034860009 ADY(ph)DTLSLR ddPTM_K562_Paclitaxel_30min_R1 1 ADYDTLSLR 9 0 Q9Y446;Q9Y446-2;E9PKC4;E9PK71;E9PJR7;E9PRW6;E9PQ15 Q9Y446 PKP3 Plakophilin-3 1 ADY(0.921)DT(0.079)LSLR 129.42 0.0013766 3685500 780.9 901.71 1599.7 1296.4 1066.8 831.79 884.24 1009.2 921.92 1120.3 TRUE FALSE 791.8350093 1000.161747 1195.83595 1213.254706 1212.116221 979.2962776 1052.019924 923.4621608 1010.474535 891.9822451 0.887725079 1.121279883 1.340649948 1.36017809 1.358901736 1.097887635 1.179418009 1.035292088 1.132841535 1 9.800871183 -7.943552434 1.672255551 1.061903403 1.217684559 0.158621237 0.140101386 0.754360545 4.181065567 0.094890343 0.049282328 1.14E-08 7.943552434 0.155781156 AEAPAGPALGLPS(ph)PEAESGVDRGEPEPMEVEEGELEIVPVRR ddPTM_K562_Paclitaxel_30min_R1 3 AEAPAGPALGLPSPEAESGVDRGEPEPMEVEEGELEIVPVRR 42 2 Q53F19 Q53F19 C17orf85 Uncharacterized protein C17orf85 1 AEAPAGPALGLPS(0.828)PEAES(0.172)GVDRGEPEPMEVEEGELEIVPVRR;AEAPAGPALGLPS(0.817)PEAES(0.183)GVDRGEPEPMEVEEGELEIVPVRR;AEAPAGPALGLPS(0.533)PEAES(0.467)GVDRGEPEPMEVEEGELEIVPVRR 69.644 3.21E-08 571128000 1662.85 1258.58 1713.39 1364.54 1287.37 1418.6 1388.97 1539.12 1138.7 2101.47 TRUE FALSE 1686.13503 1395.996021 1280.823504 1277.024512 1462.731589 1670.168792 1652.519807 1408.362149 1248.077223 1673.18926 1.007737182 0.834332406 0.765498282 0.763227772 0.874217654 0.998194784 0.987646673 0.841723159 0.745927106 1 10.70838493 -6.99922695 24.97558544 0.912347637 0.834353936 0.107879101 0.096575363 62.21438246 2009876.42 0.032040498 0.03601292 1.00E-07 6.99922695 -0.077993701 AEAPAGPALGLPSPEAES(ph)GVDRGEPEPMEVEEGELEIVPVRR ddPTM_K562_Paclitaxel_30min_R1 2 AEAPAGPALGLPSPEAESGVDRGEPEPMEVEEGELEIVPVRR 42 2 Q53F19 Q53F19 C17orf85 Uncharacterized protein C17orf85 1 AEAPAGPALGLPS(0.227)PEAES(0.773)GVDRGEPEPMEVEEGELEIVPVRR;AEAPAGPALGLPS(0.314)PEAES(0.686)GVDRGEPEPMEVEEGELEIVPVRR 58.257 1.15E-05 486653000 1093.13 1042.21 1567.54 1349.2 1132.74 1153.15 1051.33 1361.93 1073.66 1051.21 TRUE FALSE 1108.437193 1156.002012 1171.79514 1262.668351 1287.038365 1357.644961 1250.814379 1246.225546 1176.78984 836.972825 1.324340719 1.381170305 1.400039649 1.508613318 1.537730171 1.622089656 1.494450407 1.488967752 1.406007226 1 9.709036972 -9.257520629 2.981861916 1.000022136 1.473499339 0.752679816 0.080246517 0.991759513 10.7738495 0.087692573 0.023387684 5.53E-10 9.257520629 0.473477203 AEAPS(ph)SPDVAPAGKEDSPSASGR ddPTM_K562_Paclitaxel_30min_R1 2 AEAPSSPDVAPAGKEDSPSASGR 23 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 AEAPS(0.5)S(0.5)PDVAPAGKEDSPSASGR;AEAPS(0.541)S(0.459)PDVAPAGKEDSPSASGR 129.52 5.18E-09 281210000 3317.6 2317.41 4332.8 3514.9 2300.67 2540.4 2244.9 3336 1829.61 3581.1 TRUE FALSE 3364.056636 2570.432661 3238.931053 3289.470046 2614.060205 2990.904271 2670.858056 3052.585977 2005.352215 2851.269854 1.179845054 0.90150452 1.135960894 1.153685976 0.916805612 1.048972712 0.936725807 1.070605777 0.703318983 1 11.47738887 -7.722135742 0.841768681 0.904102818 1.071548388 0.233777637 0.12073793 0.981882584 1.377911226 0.091533274 0.055986535 1.90E-08 7.722135742 0.16744557 AEASS(ph)PVPYLSPETNPASSTSAVNHNVNLTNVR ddPTM_K562_Paclitaxel_30min_R1 2 AEASSPVPYLSPETNPASSTSAVNHNVNLTNVR 33 0 G3V1L9;Q07157 G3V1L9 TJP1 Tight junction protein ZO-1 1 AEAS(0.207)S(0.673)PVPY(0.062)LS(0.026)PET(0.026)NPAS(0.005)S(0.001)TSAVNHNVNLTNVR;AEAS(0.181)S(0.741)PVPY(0.029)LS(0.008)PET(0.04)NPASSTSAVNHNVNLTNVR 107.13 2.27E-14 56371000 2364.07 2248.73 3097.5 2816.7 2471.1 2104.67 2121.28 2943.9 2114.95 3656 TRUE FALSE 2397.174274 2494.253946 2315.497816 2636.049469 2807.705656 2477.903673 2523.781806 2693.79732 2318.100397 2910.905193 0.823515063 0.856865401 0.79545628 0.905577233 0.96454727 0.851248498 0.867009277 0.925415684 0.79635036 1 11.50725214 AEASSPVPY(ph)LSPETNPASSTSAVNHNVNLTNVR ddPTM_K562_Paclitaxel_30min_R1 1 AEASSPVPYLSPETNPASSTSAVNHNVNLTNVR 33 0 G3V1L9;Q07157 G3V1L9 TJP1 Tight junction protein ZO-1 1 AEAS(0.062)S(0.232)PVPY(0.606)LS(0.05)PET(0.05)NPAS(0.001)STSAVNHNVNLTNVR 113.79 2.31E-15 53792000 1497.9 1242.5 1782.8 1551 1195.8 1126.2 1226.9 1497.9 1130.8 1847.5 TRUE FALSE 1518.875221 1378.160352 1332.710091 1451.525802 1358.688205 1325.915757 1459.69787 1370.644045 1239.418393 1470.978486 1.032561139 0.936900414 0.906002435 0.986775684 0.923662867 0.901383515 0.992331216 0.931790681 0.842580911 1 10.52256043 -5.262482196 6.716523489 0.934456489 1.03424815 0.287958306 0.045663407 0.141201273 43.2282333 0.010997306 0.064613387 5.46E-06 5.262482196 0.099791662 AEASSPVPYLSPET(ph)NPASSTSAVNHNVNLTNVR ddPTM_K562_Paclitaxel_30min_R1 1 AEASSPVPYLSPETNPASSTSAVNHNVNLTNVR 33 0 G3V1L9;Q07157 G3V1L9 TJP1 Tight junction protein ZO-1 1 AEAS(0.054)S(0.205)PVPY(0.051)LS(0.322)PET(0.342)NPAS(0.021)S(0.003)T(0.001)SAVNHNVNLTNVR 91.869 5.23E-10 56113000 874.34 828.13 980.86 1112.1 912.07 841.04 722.82 853.37 757.1 930.95 TRUE FALSE 886.5834576 918.548034 733.2297619 1040.774884 1036.309375 990.1866352 859.9713216 780.8708919 829.8228378 741.221879 1.19611075 1.239234917 0.989217645 1.404134056 1.398109534 1.335884252 1.160207687 1.053491423 1.119533653 1 9.533761656 -8.011652496 4.304516822 1.068969895 1.259953542 0.385609155 0.114612634 0.252170063 11.28305333 0.058647308 0.035283856 9.74E-09 8.011652496 0.190983647 AEDGSVIDYELIDQDAR ddPTM_K562_Paclitaxel_30min_R1 1 AEDGSVIDYELIDQDAR 17 0 P07355-2;P07355;H0YN42;H0YMU9;H0YMD0;H0YN28;H0YM50;H0YNA0;H0YNP5;H0YL33 P07355-2 ANXA2 Annexin A2;Annexin 0 108.32 0.0067807 3537100 660.1 784.44 773.18 651.89 526.62 435.95 453.81 537.63 312.43 852.66 FALSE TRUE 669.3434366 870.087812 577.9811464 610.0806932 598.3545598 513.2596115 539.9180785 491.9549757 342.4402975 678.887424 0.985941723 1.281637841 0.851365228 0.898647805 0.88137523 0.756030519 0.795298395 0.724648827 0.504413965 1 9.40702855 -6.284738238 0.814262631 0.73504568 1.150720112 0.429538576 0.146142545 0.738753729 0.880509018 0.065387374 0.215098641 5.19E-07 6.284738238 0.415674432 AEDS(ph)DS(ph)EPEPEDNVR ddPTM_K562_Paclitaxel_30min_R1 2 AEDSDSEPEPEDNVR 15 0 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 2 AEDS(1)DS(1)EPEPEDNVR;AEDS(1)DS(1)EPEPEDNVR 121.95 0.0023391 43839000 5539.6 4658.7 7678.7 6440.6 5058.7 4526.6 4698.3 5987.3 4646.2 7419.9 TRUE FALSE 5617.171491 5167.352621 5740.117216 6027.528743 5747.780584 5329.328953 5589.777898 5478.641493 5092.48827 5907.720307 0.950818793 0.874677939 0.97162982 1.020279978 0.972926998 0.902095678 0.946181879 0.927369816 0.862005648 1 12.52838581 -10.95675193 11.26267937 1.000003034 0.938209463 0.149360092 0.045326958 0 0 0.046490655 0.01127564 1.10E-11 10.95675193 -0.061793571 AEEDEILNRS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 13 AEEDEILNRSPR 12 1 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 1 AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR;AEEDEILNRS(1)PR 141.1 7.88E-05 22770611000 46908.7 53814.4 66694.2 55189 45386.1 42633.9 43117 55211.1 41375.1 60895.8 TRUE FALSE 47565.56653 59690.03818 49856.42435 51649.42456 51568.45521 50194.42356 51298.22566 50520.57244 45349.36322 48485.20253 0.981032646 1.231098048 1.028281243 1.065261603 1.063591622 1.035252426 1.058018178 1.041979198 0.935323787 1 15.56525689 -7.996644763 0.659247919 0.977680474 1.087591108 0.228968095 0.064571835 1.041864236 0.888007333 0.05672741 0.033446126 1.01E-08 7.996644763 0.109910634 AEEDEILNRSPR ddPTM_K562_Paclitaxel_30min_R1 1 AEEDEILNRSPR 12 1 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 0 95.477 0.0057768 0 1772.1 1660 2665 1720.4 1475.1 1532.5 1359 2214.7 1473 2001 FALSE TRUE 1796.914867 1841.244414 1992.18779 1610.061244 1676.033594 1804.267358 1616.863156 2026.547411 1614.488232 1593.195102 1.127868687 1.155692992 1.250435548 1.010586364 1.051995196 1.132483621 1.014855716 1.272002035 1.013365049 1 10.63770723 -8.988194025 0.014412249 1.15E-06 2.159991847 0.156156041 0.088166335 1482.209315 14.35712564 1094.208032 1054.307276 1.03E-09 8.988194025 2.159990699 AEETRYPQQYQPS(ph)PLPVHYELLTDGYTR ddPTM_K562_Paclitaxel_30min_R1 1 AEETRYPQQYQPSPLPVHYELLTDGYTR 28 1 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 AEET(0.007)RY(0.035)PQQY(0.015)QPS(0.91)PLPVHY(0.025)ELLT(0.005)DGY(0.002)T(0.002)R 51.539 0.0099208 9275000 410.88 235.6 447.67 373.72 117.85 254.54 229.46 297.53 371.97 393.15 TRUE FALSE 416.6335877 261.3236047 334.6501718 349.7512719 133.9031652 299.6790951 272.9988371 272.2529694 407.6993805 313.0258142 1.330987953 0.834830844 1.069081707 1.117324055 0.42777036 0.957362241 0.87212883 0.869746063 1.302446514 1 8.290137826 -5.253085023 24.15941893 0.927046409 1.330988281 0.22663088 0.216246549 1008.630376 2916685.808 0.053599107 0.584425942 5.58E-06 5.253085023 0.403941873 AEFTS(ph)PPSLFK ddPTM_K562_Paclitaxel_30min_R1 1 AEFTSPPSLFK 11 0 Q6UN15-3;Q6UN15-5;Q6UN15;A0A0B4J203;Q6UN15-4 Q6UN15-3 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 AEFT(0.036)S(0.932)PPS(0.031)LFK 112.5 0.0049526 63045000 2320.9 2021.3 3444.3 2437.3 1804.3 1658.8 1646.7 2158 1763.6 2738.6 TRUE FALSE 2353.399761 2241.99237 2574.743866 2280.982487 2050.076207 1952.964889 1959.152729 1974.66443 1933.00166 2180.471817 1.07930758 1.028214331 1.180819604 1.046095836 0.940198443 0.895661606 0.89849945 0.90561337 0.886506143 1 11.09042463 -6.733009873 3.217314236 0.911163878 1.092382491 0.751967484 0.046326475 0.112269467 2.397359377 0.014201599 0.0179642 1.85E-07 6.733009873 0.181218614 AEGEWEDQEALDYFS(ph)DKESGK ddPTM_K562_Paclitaxel_30min_R1 1 AEGEWEDQEALDYFSDKESGK 21 1 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 AEGEWEDQEALDY(0.014)FS(0.694)DKES(0.292)GK 58.319 0.020476 34313000 2167.6 1008.5 5038.9 2226.3 1286.2 1090.8 1201.1 2272 1151.4 3464.5 TRUE FALSE 2197.953088 1118.611441 3766.767375 2083.515083 1461.402216 1284.238064 1429.002455 2078.979419 1261.997115 2758.432998 0.796812208 0.405524238 1.365546083 0.755325608 0.529794349 0.465567975 0.518048637 0.753681318 0.457505082 1 11.42963322 -6.537830126 13.80855408 0.599798543 0.852480574 0.136686874 0.26453644 2.40499507 2216.457769 0.076993267 0.09993674 2.90E-07 6.537830126 0.25268203 AEGSSKIQARMEQQPT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 AEGSSKIQARMEQQPTR 17 2 Q96JC9 Q96JC9 EAF1 ELL-associated factor 1 1 AEGSSKIQARMEQQPT(1)R 58.98 0.027266 0 499.69 606.93 368.75 503.85 456.99 502.09 392.62 497.02 449.99 518.35 TRUE FALSE 506.6872017 673.1966699 275.6545019 471.5353161 519.2397749 591.1286118 467.1175954 454.7950487 493.2135501 412.7099855 1.227707639 1.631161575 0.667913333 1.142534304 1.258122636 1.432309933 1.131830127 1.101972486 1.19506086 1 8.688984534 -9.356841294 0.823810334 1.001302437 1.210883348 0.06453018 0.23298108 3.974550013 4.967757264 0.23800849 0.081688636 4.40E-10 9.356841294 0.209580912 AEHS(ph)YLR ddPTM_K562_Paclitaxel_30min_R1 1 AEHSYLR 7 0 H3BTE0;P98161-2;P98161-3;P98161 H3BTE0 PKD1 Polycystin-1 1 AEHS(1)YLR 84.498 0.022028 7390100 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 AEISHHISSCDDR ddPTM_K562_Paclitaxel_30min_R1 2 AEISHHISSCDDR 13 0 G3V1V4;Q8WW33 G3V1V4 GTSF1 Gametocyte-specific factor 1 0 ; 154.67 0.00036539 51138000 4463.4 3843.8 4572.4 4793.8 4129.5 3852.7 3612.7 4602.3 2927.2 5112.4 FALSE TRUE 4525.901371 4263.479083 3418.041069 4486.347124 4692.007813 4535.92225 4298.190965 4211.305888 3208.370639 4070.490074 1.111881196 1.047411738 0.83971242 1.102163878 1.152688676 1.114343032 1.055939429 1.034594315 0.788202546 1 11.99098679 -8.624509525 7.809112136 0.895472069 1.057813651 0.330816632 0.093402891 0.282005587 19.09664565 0.066396477 0.024763207 2.37E-09 8.624509525 0.162341582 AEKPPLSAS(ph)SPQQRPPEPETGESAGTSR ddPTM_K562_Paclitaxel_30min_R1 1 AEKPPLSASSPQQRPPEPETGESAGTSR 28 2 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 AEKPPLS(0.041)AS(0.502)S(0.421)PQQRPPEPET(0.012)GES(0.012)AGT(0.006)S(0.006)R 52.927 0.0054295 31263000 2640.8 2283.5 3434.6 2559.4 1808.2 1585.3 1740.7 2496.8 2087.3 3032.5 TRUE FALSE 2677.779348 2532.820252 2567.492751 2395.251539 2054.507453 1866.430696 2070.988738 2284.681255 2287.794491 2414.474835 1.109052498 1.049014972 1.063375237 0.992038312 0.850912763 0.77301725 0.857738796 0.946243557 0.947532962 1 11.23749371 -6.532897417 3.252433719 0.885625619 1.069581166 0.626258766 0.061471382 0.165555175 3.643581342 0.020092059 0.028602422 2.93E-07 6.532897417 0.183955548 AEKPPLSASS(ph)PQQRPPEPETGESAGTSR ddPTM_K562_Paclitaxel_30min_R1 1 AEKPPLSASSPQQRPPEPETGESAGTSR 28 2 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 AEKPPLS(0.022)AS(0.277)S(0.701)PQQRPPEPETGESAGTSR 74.627 0.0008394 11503000 448.09 332.71 611.73 348.79 365.05 341.47 208.59 403.33 393.87 607.83 TRUE FALSE 454.3646425 369.036403 457.2911957 326.4201705 414.7759903 402.02491 248.1688636 369.064599 431.7029734 483.9539124 0.938859323 0.762544518 0.944906496 0.674486066 0.857056798 0.830709082 0.512794415 0.76260278 0.892033234 1 8.918725854 -2.000035134 0.723503515 0.779017435 22.07993809 0.057956233 0.134100672 862.8210154 4.151852028 0.050885444 29842.81561 0.009999191 2.000035134 21.30092065 AELGMGDSTSQS(ph)PPIKR ddPTM_K562_Paclitaxel_30min_R1 2 AELGMGDSTSQSPPIKR 17 1 Q9NR19;Q9NR19-2 Q9NR19 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" 1 AELGMGDST(0.002)S(0.004)QS(0.993)PPIKR;AELGMGDS(0.002)T(0.002)S(0.002)QS(0.993)PPIKR 80.541 0.0093273 54580000 2441.6 1737.13 4113.7 2505.2 1930.82 1782.97 1638.24 2678.4 2360.5 3159.3 TRUE FALSE 2475.789933 1926.795728 3075.145557 2344.527685 2193.830373 2099.154695 1949.087488 2450.853202 2587.236572 2515.432926 0.984240091 0.765989706 1.222511452 0.932057325 0.87214823 0.834510304 0.774851704 0.974326597 1.028545244 1 11.29659101 -4.422041012 15.9850005 0.931776036 0.935719874 0 0.129705601 0 0 0.03006818 0 3.78E-05 4.422041012 0.003943839 AELLQSDENGIPS(ph)SPQK ddPTM_K562_Paclitaxel_30min_R1 2 AELLQSDENGIPSSPQK 17 0 Q14542-3;Q14542 Q14542-3 SLC29A2 Equilibrative nucleoside transporter 2 1 AELLQSDENGIPS(0.5)S(0.5)PQK;AELLQSDENGIPS(0.5)S(0.5)PQK 132.14 2.47E-07 29966000 3073.7 1979.69 4882.1 3107.7 2573.8 1840.27 2129.7 3690 2516.2 4028.2 TRUE FALSE 3116.741283 2195.839249 3649.553474 2908.386032 2924.395135 2166.616046 2533.799457 3376.511468 2757.892253 3207.250629 0.971779771 0.684648474 1.137907166 0.906815952 0.911807487 0.675536868 0.790022281 1.052774435 0.859892965 1 11.64712138 -8.258593084 24.96458845 0.967250271 0.867395 0.107077829 0.135537594 614.5172541 5389926.766 0.068093974 0.037104561 5.51E-09 8.258593084 -0.09985527 AEMT(ph)LIPMKGEFS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 AEMTLIPMKGEFSR 14 1 Q70JA7 Q70JA7 CHSY3 Chondroitin sulfate synthase 3 2 AEMT(1)LIPMKGEFS(1)R 70.783 0.029695 0 550.47 642.18 994.63 805.99 600.61 699.47 595.02 586.35 605.63 580.88 TRUE FALSE 558.1782783 712.2953841 743.5233551 754.2974089 682.4232504 823.5111835 707.9219388 536.5359076 663.8034675 462.4963371 1.206881511 1.540110325 1.607630797 1.630926233 1.475521416 1.780578823 1.530654152 1.160086826 1.435262107 1 8.85329813 -8.892922699 0.977269564 1.027513158 1.54766589 0.459599372 0.1686394 0.466388328 0.995241367 0.16142088 0.055425466 1.28E-09 8.892922699 0.520152731 AENGERS(ph)DLEEDNER ddPTM_K562_Paclitaxel_30min_R1 1 AENGERSDLEEDNER 15 1 Q8WU90 Q8WU90 ZC3H15 Zinc finger CCCH domain-containing protein 15 1 AENGERS(1)DLEEDNER 139.88 6.14E-06 3666400 810.52 1153.1 1086.2 1172.9 961.37 987.77 820.65 1146.2 808.57 1435.8 TRUE FALSE 821.8697807 1278.999358 811.975376 1097.675444 1092.32487 1162.937141 976.3640534 1048.823156 886.2367613 1143.183172 0.718930965 1.11880527 0.71027583 0.960192094 0.955511677 1.017279793 0.8540749 0.917458533 0.77523601 1 10.15884087 -4.991816825 14.6550442 0.917033315 0.457828633 0.225501049 0.113051799 1162195.843 27728371.53 0.026485127 10103453.97 1.02E-05 4.991816825 -0.459204682 AENGTGS(ph)SPRGPGCSLR ddPTM_K562_Paclitaxel_30min_R1 1 AENGTGSSPRGPGCSLR 17 1 M0R102;M0R050;Q9NQT4 M0R102 EXOSC5 Exosome complex component RRP46 1 AENGT(0.003)GS(0.498)S(0.498)PRGPGCSLR 72.428 0.019538 94995000 1000.7 1011.2 1201.3 1052.3 858.39 870.12 760.22 867.52 915.99 1097.3 TRUE FALSE 1014.712887 1121.606236 898.0169575 984.8101879 975.3172507 1024.423565 904.4677764 793.8187611 1003.974932 873.6696577 1.161437711 1.283787557 1.027867856 1.12721116 1.116345568 1.172552527 1.035251446 0.908602873 1.149147076 1 9.770944077 -5.600776373 0.259337428 0.99149567 1.349623353 0.312935357 0.083810942 9.383169054 0.618022475 0.121427567 1.06724743 2.51E-06 5.600776373 0.358127684 AENNS(ph)EVGASGYGVPGPTWDR ddPTM_K562_Paclitaxel_30min_R1 2 AENNSEVGASGYGVPGPTWDR 21 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 1 AENNS(0.93)EVGAS(0.034)GY(0.027)GVPGPT(0.009)WDR;AENNS(0.999)EVGAS(0.001)GYGVPGPTWDR 174.01 7.86E-20 34326000 1848.52 2175.52 2535.13 2332.88 1657.23 2017.94 2126.82 2563.8 2070.61 3521.9 TRUE FALSE 1874.404983 2413.050631 1895.105077 2183.259518 1882.972783 2375.793326 2530.372992 2345.989187 2269.501342 2804.134847 0.66844324 0.860533021 0.67582523 0.778585781 0.671498657 0.847246461 0.902372079 0.836617822 0.809341015 1 11.45334001 -7.410395711 5.894529047 0.873618874 0.73820729 0.513476915 0.072234675 0.210114464 9.56084585 0.024396145 0.021368727 3.89E-08 7.410395711 -0.135411584 AEPEAGEEQAGDDRDS(ph)GGPVLQFDYEAVANR ddPTM_K562_Paclitaxel_30min_R1 4 AEPEAGEEQAGDDRDSGGPVLQFDYEAVANR 31 1 P56182 P56182 RRP1 Ribosomal RNA processing protein 1 homolog A 1 AEPEAGEEQAGDDRDS(0.992)GGPVLQFDY(0.008)EAVANR;AEPEAGEEQAGDDRDS(0.998)GGPVLQFDY(0.002)EAVANR;AEPEAGEEQAGDDRDS(1)GGPVLQFDYEAVANR;AEPEAGEEQAGDDRDS(0.998)GGPVLQFDY(0.002)EAVANR 99.971 6.84E-12 46589900 1851.66 1408.12 1698.17 1604.44 1383.63 1310.79 1605.26 1608.54 1547.15 1546.52 TRUE FALSE 1877.588953 1561.863304 1269.445981 1501.5384 1572.103831 1543.240202 1909.849705 1471.884487 1695.76067 1231.338375 1.524835895 1.268427376 1.030948118 1.219436046 1.276743958 1.2533031 1.55103564 1.195353379 1.377168701 1 10.26601156 -11.00198464 4.412646088 0.999989797 1.290794243 0.272609877 0.146214178 110507923.4 137506077.3 16356.90382 0.037418149 9.95E-12 11.00198464 0.290804445 AEPSEVDMNS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 AEPSEVDMNSPK 12 0 Q9NR30 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 AEPSEVDMNS(1)PK;AEPSEVDMNS(1)PK 201.72 1.53E-06 69643000 3303.3 2333 5696.8 3611.3 2968.4 2410.6 1992.61 3417.3 2832.7 4378.9 TRUE FALSE 3349.556392 2587.72483 4258.572383 3379.687382 3372.746335 2838.086063 2370.697345 3126.979035 3104.793492 3486.477776 0.960727877 0.742217503 1.221454045 0.96937012 0.967379273 0.814026719 0.679969154 0.8968877 0.890524389 1 11.76755457 -7.252206321 21.76193677 0.838817552 0.973138285 0.156384945 0.131552055 198.7765065 468506.2237 0.044424397 0.043678327 5.59E-08 7.252206321 0.134320733 AEQPS(ph)PPNS(ph)DSGQDAHPDPDANPDAAR ddPTM_K562_Paclitaxel_30min_R1 1 AEQPSPPNSDSGQDAHPDPDANPDAAR 27 0 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 2 AEQPS(0.959)PPNS(0.521)DS(0.521)GQDAHPDPDANPDAAR 57.325 0.0097365 14954000 501.99 420.21 590.06 555.67 540.09 365.08 314.28 533.19 517.31 516.98 TRUE FALSE 509.0194088 466.0899489 441.0920552 520.0318133 613.6594018 429.821812 373.9129893 487.8921814 566.9999369 411.6191922 1.236627005 1.132332888 1.071602257 1.26338087 1.490842539 1.04422199 0.908395421 1.185299886 1.377486637 1 8.685166441 AEQS(ph)LHDLQER ddPTM_K562_Paclitaxel_30min_R1 4 AEQSLHDLQER 11 0 E9PNJ4;Q13586;G0XQ39;Q13586-2 E9PNJ4 STIM1 Stromal interaction molecule 1 1 AEQS(1)LHDLQER;AEQS(1)LHDLQER;AEQS(1)LHDLQER;AEQS(1)LHDLQER 140.27 0.00064754 187434000 6871.4 5629.05 6817 5952.8 5241.91 5725.8 6957.2 7732 7529.7 9645.2 TRUE FALSE 6967.6208 6243.648715 5095.964038 5571.014052 5955.946888 6741.190236 8277.292381 7075.118338 8252.961329 7679.502946 0.907301013 0.813027713 0.663579931 0.725439406 0.775564113 0.877815958 1.077842204 0.921298994 1.074673893 1 12.90679722 -7.517011019 3.356120279 1.011540705 0.7710893 0.712887887 0.071865043 0.139616678 3.301579495 0.029634124 0.023761148 3.04E-08 7.517011019 -0.240451405 AES(ph)GDSLGSEDRDLLYSIDAYR ddPTM_K562_Paclitaxel_30min_R1 2 AESGDSLGSEDRDLLYSIDAYR 22 1 Q9NQW6;Q9NQW6-2 Q9NQW6 ANLN Actin-binding protein anillin 1 AES(0.672)GDS(0.155)LGS(0.172)EDRDLLYSIDAYR;AES(0.727)GDS(0.101)LGS(0.172)EDRDLLYSIDAYR 71.418 0.0031124 22971000 1156.45 1048.25 1669.22 1292.47 991.08 975.23 1014.55 1334.21 1099.54 1135.14 TRUE FALSE 1172.643868 1162.70148 1247.804766 1209.576759 1126.081875 1148.173348 1207.055566 1220.860533 1205.15573 903.7978449 1.297462563 1.286461886 1.380623746 1.338326669 1.245944413 1.270387348 1.335537115 1.350811511 1.333435056 1 9.819856307 -11.04094416 5.133714633 0.999998101 1.315443047 0.858390024 0.038436802 1.80E-06 3.37E-07 0.040578629 0.009841646 9.10E-12 11.04094416 0.315444946 AES(ph)PEEVACR ddPTM_K562_Paclitaxel_30min_R1 2 AESPEEVACR 10 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 AES(1)PEEVACR;AES(1)PEEVACR 120.77 0.0026659 34196000 2534.3 2527.5 3755.4 3281.8 2608.5 2472 2148 3188.3 1693.26 3772.3 TRUE FALSE 2569.788019 2803.460997 2807.302824 3071.320037 2963.821862 2910.374491 2555.571787 2917.434014 1855.905189 3003.503189 0.8555969 0.933397044 0.934676159 1.022579249 0.986788319 0.968993308 0.850863683 0.971343738 0.617913507 1 11.55243048 AES(ph)PESSAIESTQS(ph)TPQKGR ddPTM_K562_Paclitaxel_30min_R1 3 AESPESSAIESTQSTPQKGR 20 1 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 2 AES(0.875)PES(0.111)S(0.014)AIEST(0.006)QS(0.792)T(0.202)PQKGR;AES(0.965)PES(0.015)S(0.019)AIES(0.003)T(0.062)QS(0.606)T(0.329)PQKGR;AES(0.879)PES(0.094)S(0.026)AIES(0.042)T(0.027)QS(0.636)T(0.295)PQKGR 143.35 4.41E-13 167050000 9582 7918.6 17327.7 10465.7 7756.7 7642.7 6318 10057.9 9728.3 12717.5 TRUE FALSE 9716.177563 8783.179527 12953.10783 9794.476845 8813.293862 8998.025536 7516.807518 9203.418616 10662.74668 10125.66652 0.959559308 0.86741742 1.279235081 0.967292062 0.870391479 0.888635382 0.742351874 0.908919783 1.053041463 1 13.30572926 -6.522880998 24.57286703 0.89852772 1.036048311 0.166270448 0.123687617 0.123653822 1148221.676 0.037358644 0.04877583 3.00E-07 6.522880998 0.13752059 AES(ph)PESSAIESTQST(ph)PQKGR ddPTM_K562_Paclitaxel_30min_R1 1 AESPESSAIESTQSTPQKGR 20 1 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 2 AES(0.811)PES(0.057)S(0.131)AIESTQS(0.028)T(0.972)PQKGR 148.58 4.26E-12 52010000 3229.6 2322.3 5661.4 3313.1 1965.1 2156.9 1857.8 3640.2 2940 3973.3 TRUE FALSE 3274.824364 2575.856568 4232.109551 3100.612595 2232.779889 2539.395931 2210.307852 3330.942289 3222.400136 3163.539279 1.0351774 0.814232523 1.337776831 0.980108771 0.705785417 0.802707255 0.698681969 1.052916368 1.018606014 1 11.62732379 -6.529389287 24.98824248 0.86710411 1.057806536 0.197859359 0.164894141 259.3214364 995300.8871 0.050355856 0.065175721 2.96E-07 6.529389287 0.190702426 AES(ph)PESSAIESTQSTPQK ddPTM_K562_Paclitaxel_30min_R1 1 AESPESSAIESTQSTPQK 18 0 Q9NTI5-2;Q9NTI5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 AES(0.999)PES(0.001)SAIESTQSTPQK 156.67 2.18E-09 49831000 3400.3 2785.9 6076.1 3959.3 2592.5 2152.1 1968.4 3283.7 2772.7 4032 TRUE FALSE 3447.914691 3090.073983 4542.113407 3705.368219 2945.642391 2533.744718 2341.893624 3004.729189 3039.030224 3210.276187 1.074024318 0.962557052 1.414866866 1.154221009 0.917566658 0.789260665 0.729499111 0.935972176 0.946656938 1 11.64848171 -6.806563479 4.612479884 0.866516963 1.158030783 0.50377517 0.128649887 0.168855056 7.777538017 0.042369524 0.049884027 1.56E-07 6.806563479 0.29151382 AES(ph)PSPAPPPGLR ddPTM_K562_Paclitaxel_30min_R1 1 AESPSPAPPPGLR 13 0 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 1 AES(0.986)PS(0.014)PAPPPGLR 174.21 0.00010976 72039000 1360 1239.4 1832.9 1785.9 1292.6 1297.5 1041.2 1518.7 1132.2 1487.1 TRUE FALSE 1379.044196 1374.721883 1370.161726 1671.360367 1468.674004 1527.593407 1238.762265 1389.676956 1240.952869 1184.028204 1.16470553 1.161055015 1.157203622 1.411588307 1.240404578 1.290166402 1.046226991 1.173685687 1.048077119 1 10.20948773 -8.356402945 1.056716491 1.019835773 1.23388752 0.448331494 0.086976313 0.524453615 1.03908948 0.082194619 0.031285491 4.40E-09 8.356402945 0.214051747 AES(ph)PTPGMAQGMEPGAGQEGAMFVHAR ddPTM_K562_Paclitaxel_30min_R1 2 AESPTPGMAQGMEPGAGQEGAMFVHAR 27 0 A0A0A0MSQ9;Q86VX9-5;Q86VX9 A0A0A0MSQ9 MON1A Vacuolar fusion protein MON1 homolog A 1 AES(0.775)PT(0.225)PGMAQGMEPGAGQEGAMFVHAR;AES(0.732)PT(0.268)PGMAQGMEPGAGQEGAMFVHAR 249.87 8.67E-100 106859600 1705.19 1719.79 2230.25 1978.54 1779.9 1943.35 1658.79 2350.73 1218.85 2575.42 TRUE FALSE 1729.067921 1907.562488 1667.195804 1851.6453 2022.352514 2287.975837 1973.536743 2151.020814 1335.925988 2050.54799 0.843222363 0.930269614 0.813048908 0.903000227 0.986249785 1.11578751 0.962443577 1.048998036 0.651497061 1 11.00179379 -6.608670959 4.646480379 0.970615285 0.867330597 0.122618143 0.117399443 0.431833829 16.7043232 0.035032185 0.045944487 2.46E-07 6.608670959 -0.103284688 AESHDMLMMMT(ph)YSMVPIRVMVDLCNS(ph)TK ddPTM_K562_Paclitaxel_30min_R1 1 AESHDMLMMMTYSMVPIRVMVDLCNSTK 28 1 A0A087X220;Q6ZMI3 A0A087X220 GLDN Gliomedin 2 AES(0.011)HDMLMMMT(0.851)Y(0.071)S(0.075)MVPIRVMVDLCNS(0.496)T(0.496)K 42.454 0.018212 1871400000 701.22 630.59 680.57 790.67 763.23 758.04 757.61 757.52 387.54 746.82 TRUE FALSE 711.0392434 699.4399487 508.7516863 739.9599651 867.1948476 892.4677506 901.3625425 693.1639477 424.7649486 594.6176741 1.195792312 1.176285165 0.855594626 1.24442982 1.458407453 1.500910231 1.515869073 1.165730482 0.714349686 1 9.215818535 -8.610871142 5.765023182 0.866152178 1.276755902 0.421435058 0.194269447 0.225202563 11.50771877 0.154867412 0.056200057 2.45E-09 8.610871142 0.410603724 AESPS(ph)PAPPPGLR ddPTM_K562_Paclitaxel_30min_R1 1 AESPSPAPPPGLR 13 0 Q9BUA3 Q9BUA3 C11orf84 Uncharacterized protein C11orf84 1 AES(0.414)PS(0.586)PAPPPGLR 85.672 0.023164 73517000 1108.3 975.64 1396.2 1167.1 961.18 971.5 1090.2 1282.1 1085.1 1242 TRUE FALSE 1123.819619 1082.163675 1043.712042 1092.24743 1092.108989 1143.781884 1297.059759 1173.177602 1189.328703 988.8797183 1.136457345 1.094332966 1.055448932 1.104530116 1.104390118 1.156644093 1.311645628 1.186370375 1.202703101 1 9.94965124 -7.367500054 3.93546955 1.195224289 1.096495026 0.169565808 0.074574255 0.312205164 8.57859413 0.026182757 0.022882156 4.29E-08 7.367500054 -0.098729263 AESPT(ph)PGMAQGMEPGAGQEGAMFVHAR ddPTM_K562_Paclitaxel_30min_R1 1 AESPTPGMAQGMEPGAGQEGAMFVHAR 27 0 A0A0A0MSQ9;Q86VX9-5;Q86VX9 A0A0A0MSQ9 MON1A Vacuolar fusion protein MON1 homolog A 1 AES(0.4)PT(0.6)PGMAQGMEPGAGQEGAMFVHAR 116.64 7.32E-12 111930000 2057.3 1959.6 2779.1 2239.7 1779.8 2018.7 1536.8 2798.8 1408.9 3103 TRUE FALSE 2086.108547 2173.555755 2077.481834 2096.055667 2022.238892 2376.688101 1828.399777 2561.02447 1544.23114 2470.606897 0.844370891 0.879765922 0.840879153 0.848397076 0.818519083 0.961985537 0.740060987 1.036597313 0.625041216 1 11.27064976 AET(ph)PPLPIPPPPPDIQPLER ddPTM_K562_Paclitaxel_30min_R1 2 AETPPLPIPPPPPDIQPLER 20 0 U3KPW8;A0A669KB72;Q8IX15;Q8IX15-3 U3KPW8 HOMEZ Homeobox and leucine zipper protein Homez 1 AET(1)PPLPIPPPPPDIQPLER;AET(1)PPLPIPPPPPDIQPLER 149.52 1.36E-12 35128000 1533.79 1219.2 2105.91 1904.44 1427.46 1197.91 1393.8 1798.4 1142.89 1908.03 TRUE FALSE 1555.267792 1352.316379 1574.246975 1782.297742 1621.904219 1410.342519 1658.266274 1645.614695 1252.669691 1519.172439 1.023759879 0.890166478 1.036252985 1.173203053 1.067623515 0.928362366 1.091558951 1.08323101 0.824573734 1 10.56906992 -10.3668776 10.05976996 1 1.018429243 0 0.099202657 0 0 0.097283281 0.023594661 4.30E-11 10.3668776 0.018429243 AET(ph)PTESVSEPEVATK ddPTM_K562_Paclitaxel_30min_R1 2 AETPTESVSEPEVATK 16 0 M0R0Q7;P18858-2;P18858-3;P18858;B4E135 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 1 AET(0.995)PT(0.005)ESVSEPEVATK;AET(0.999)PT(0.001)ESVSEPEVATK 234.63 1.09E-39 51178000 3417.3 3009.5 6128.8 3954.1 2998 2580.98 2316.97 3958.2 1996.51 4489.5 TRUE FALSE 3465.152743 3338.087387 4581.50864 3700.501724 3406.378357 3038.680564 2756.602962 3621.926204 2188.283706 3574.537436 0.969398924 0.933851568 1.281706717 1.035239326 0.952956408 0.850090569 0.771177533 1.013257315 0.61218654 1 11.80354085 -6.987320092 2.585896925 0.845769005 1.062668539 0.336135641 0.136308741 0.325129345 4.393627801 0.046518265 0.05108385 1.03E-07 6.987320092 0.216899535 AETASQSQRS(ph)PISDNSGCDAPGNSNPSLSVPSSAESEKQTR ddPTM_K562_Paclitaxel_30min_R1 1 AETASQSQRSPISDNSGCDAPGNSNPSLSVPSSAESEKQTR 41 2 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 AET(0.019)AS(0.105)QS(0.036)QRS(0.573)PIS(0.204)DNS(0.061)GCDAPGNS(0.002)NPSLSVPSSAESEKQTR 53.631 0.00010938 34756000 458.23 447.27 934.96 563.76 573.34 494.39 317.12 652.07 1072.3 748.9 TRUE FALSE 464.6466338 496.1044512 698.9177846 527.6029569 651.4386147 582.0631249 377.2918645 596.6725834 1175.299206 596.2737689 0.779250502 0.832007841 1.17214243 0.884833418 1.092515969 0.976167585 0.632749392 1.000668845 1.971073134 1 9.219831061 -8.557579579 22.12111997 1.485653874 0.917860249 0.431867972 0.260579663 46.17544668 29433.46636 0.163945123 0.061967186 2.77E-09 8.557579579 -0.567793625 AETNSRVS(ph)GVDGYETEGIR ddPTM_K562_Paclitaxel_30min_R1 2 AETNSRVSGVDGYETEGIR 19 1 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 1 AET(0.004)NS(0.062)RVS(0.934)GVDGYETEGIR;AETNSRVS(0.999)GVDGYETEGIR 206.45 1.36E-22 51754000 2349.53 2014.52 2871.3 2229.33 1481.1 2057.98 1800.2 2452.1 2554.1 2458.04 TRUE FALSE 2382.430669 2234.472106 2146.404803 2086.350752 1682.850895 2422.933858 2141.778552 2243.778799 2799.432717 1957.090099 1.217333157 1.141731854 1.096732749 1.06604737 0.859874002 1.238028775 1.094368907 1.146487227 1.430405641 1 10.93449446 -8.534764142 24.98648717 1.239617366 1.099486458 0.092241688 0.136839034 438.5357451 921906.0129 0.089094689 0.033728688 2.92E-09 8.534764142 -0.140130908 AETPTES(ph)VSEPEVATK ddPTM_K562_Paclitaxel_30min_R1 1 AETPTESVSEPEVATK 16 0 M0R0Q7;P18858-2;P18858-3;P18858;B4E135 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 1 AET(0.326)PT(0.017)ES(0.488)VS(0.168)EPEVAT(0.001)K 103.91 0.0022275 8918700 2875 2441.3 5723.2 3585.2 2806.6 2357.2 2570 3465.1 2198.6 4153.3 TRUE FALSE 2915.25887 2707.84939 4278.307376 3355.261319 3188.906436 2775.216323 3057.644084 3170.718127 2409.785354 3306.85518 0.881580448 0.818859382 1.293769199 1.014638119 0.96433205 0.839231285 0.924638037 0.958831867 0.728724187 1 11.69124415 -7.038993332 4.70406101 0.890096487 1.00840542 0.135073496 0.134233416 0.436145545 22.62274711 0.04605948 0.047874083 9.14E-08 7.038993332 0.118308933 AFAAVPTSHPPEDAPAQPPT(ph)PGPAASPEQLSFR ddPTM_K562_Paclitaxel_30min_R1 1 AFAAVPTSHPPEDAPAQPPTPGPAASPEQLSFR 33 0 A0A0G2JMS7;A0A0G2JNZ2;A0A0G2JPP5;A0A669KB89;Q14160-2;Q14160;Q14160-3;H0YCG0 A0A0G2JMS7 SCRIB Protein scribble homolog 1 AFAAVPTSHPPEDAPAQPPT(0.806)PGPAAS(0.192)PEQLS(0.002)FR 147.16 4.55E-38 272330000 967.57 1094.7 1210 986.83 833.21 1006.3 880.98 1131.4 1153.2 1287 TRUE FALSE 981.1189652 1214.223048 904.5205349 923.5391407 946.7073084 1184.753176 1048.141356 1035.280508 1263.970013 1024.708694 0.957461346 1.184944615 0.882709926 0.901269938 0.923879454 1.156185346 1.022867633 1.010316897 1.233492036 1 10.00099812 -7.253111204 24.97227158 1.081360643 0.973317795 0.237867758 0.102329405 1037.473645 3110895.579 0.03493179 0.034359005 5.58E-08 7.253111204 -0.108042847 AFAAVPTSHPPEDAPAQPPTPGPAAS(ph)PEQLSFR ddPTM_K562_Paclitaxel_30min_R1 3 AFAAVPTSHPPEDAPAQPPTPGPAASPEQLSFR 33 0 A0A0G2JMS7;A0A0G2JNZ2;A0A0G2JPP5;A0A669KB89;Q14160-2;Q14160;Q14160-3;H0YCG0 A0A0G2JMS7 SCRIB Protein scribble homolog 1 AFAAVPTSHPPEDAPAQPPT(0.02)PGPAAS(0.974)PEQLS(0.006)FR;AFAAVPTSHPPEDAPAQPPT(0.018)PGPAAS(0.934)PEQLS(0.048)FR;AFAAVPTSHPPEDAPAQPPT(0.189)PGPAAS(0.776)PEQLS(0.035)FR 132.7 6.45E-25 526360000 4352.2 4820.9 5669.5 5207.6 4492.8 4543.5 4650.7 5605.6 4829.5 5970 TRUE FALSE 4413.144228 5347.262165 4238.164606 4873.607844 5104.795424 5349.225931 5533.146047 5129.369291 5293.395054 4753.310723 0.928435881 1.124955316 0.891623723 1.02530807 1.07394524 1.125368452 1.164061508 1.079115082 1.11362277 1 12.214717 -6.769885031 3.045642079 1.104586528 0.991678952 0.340190442 0.069248726 0.274345321 5.24774365 0.021243595 0.026346696 1.70E-07 6.769885031 -0.112907576 AFAAVPTSHPPEDAPAQPPTPGPAAS(ph)PEQLSFRER ddPTM_K562_Paclitaxel_30min_R1 1 AFAAVPTSHPPEDAPAQPPTPGPAASPEQLSFRER 35 1 A0A0G2JMS7;A0A0G2JNZ2;A0A0G2JPP5;A0A669KB89;Q14160-2;Q14160;Q14160-3;H0YCG0 A0A0G2JMS7 SCRIB Protein scribble homolog 1 AFAAVPTSHPPEDAPAQPPT(0.038)PGPAAS(0.946)PEQLS(0.016)FRER 66.474 1.47E-05 32434000 666.76 546.99 713.32 333.94 357.79 673.43 495.84 683.32 2261.3 595.85 TRUE FALSE 676.0966971 606.712218 533.2335438 312.5225831 406.5270554 792.8533551 589.9230515 625.2677009 2478.507969 474.4154429 1.425115281 1.278862708 1.123980156 0.658752972 0.856900975 1.671221641 1.243473543 1.317975016 5.22434083 1 8.890007162 -8.567441622 24.9986658 3.165174573 1.175930329 0.379264992 0.980951648 119.5878923 67083.78982 0.598189754 0.226094638 2.71E-09 8.567441622 -1.989244243 AFFSEVER ddPTM_K562_Paclitaxel_30min_R1 1 AFFSEVER 8 0 Q9UQ80;Q9UQ80-2;F8VR77 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 157.33 1.04E-06 56869000 3277.4 3251.1 3607 3290.8 3084.4 3341.4 2950.9 3343.8 3197.9 4343.7 FALSE TRUE 3323.293712 3606.066093 2696.368239 3079.742817 3504.547499 3933.950374 3510.81787 3059.723319 3505.072584 3458.451556 0.96091955 1.042682262 0.779646092 0.890497602 1.013328492 1.137488934 1.015141549 0.884709029 1.013480318 1 11.75591053 -6.771136244 24.44673883 1.011489248 0.917397491 0.227350257 0.083301461 254.4053433 641378.7688 0.027936628 0.032089228 1.69E-07 6.771136244 -0.094091757 AFFSEVERR ddPTM_K562_Paclitaxel_30min_R1 2 AFFSEVERR 9 1 Q9UQ80;Q9UQ80-2;F8VR77 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 ; 158.07 7.30E-06 99358000 3781.7 3430.1 3659.5 3931.6 2990.5 3223.4 3600.4 4004.1 3753.3 3753.1 FALSE TRUE 3834.655468 3804.609918 2735.613965 3679.444773 3397.85673 3795.024731 4283.557105 3663.926712 4113.821235 2988.21616 1.283259062 1.273204385 0.915467228 1.231318143 1.13708532 1.269996723 1.433483013 1.226125058 1.376681276 1 11.5450688 -7.321992274 6.152935783 1.287173896 1.16347622 0.080769871 0.1445644 0.46247457 36.36461749 0.050077365 0.044265043 4.76E-08 7.321992274 -0.123697676 AFGPGLQGGSAGS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 4 AFGPGLQGGSAGSPAR 16 0 A0A087WWY3;Q60FE5;P21333-2;P21333 A0A087WWY3 FLNA Filamin-A 1 AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR;AFGPGLQGGSAGS(1)PAR 220.42 3.52E-30 393272000 4588.1 4233.58 5172.6 4205.41 4101.17 3889.1 3592.71 4611.3 3338.43 4832.1 TRUE FALSE 4652.347556 4695.816581 3866.713156 3935.693825 4659.818787 4578.777279 4274.407967 4219.541282 3659.101118 3847.315368 1.209245178 1.220543712 1.005041902 1.022971462 1.211187112 1.190122681 1.111010551 1.09674952 0.951079069 1 11.90963638 -8.638048907 3.731458195 0.975579936 1.135411821 0.434713842 0.072963821 0.243393392 6.161094014 0.063525867 0.020763026 2.30E-09 8.638048907 0.159831884 AFHAALRNS(ph)PVNTK ddPTM_K562_Paclitaxel_30min_R1 1 AFHAALRNSPVNTK 14 1 Q9BPX5 Q9BPX5 ARPC5L Actin-related protein 2/3 complex subunit 5-like protein 1 AFHAALRNS(1)PVNTK 86.777 0.013894 42875000 2376 2173.9 3609.5 2512 2361.7 2087.7 1973.8 3137.9 2616.9 3434.1 TRUE FALSE 2409.271331 2411.253754 2698.237083 2350.891563 2683.403524 2457.924282 2348.318246 2871.315809 2868.264938 2734.228535 0.881152142 0.881877181 0.986836707 0.859800684 0.981411572 0.898946175 0.858859534 1.05013746 1.049021653 1 11.41691812 -8.272136448 24.99850092 1.037184681 0.909827858 0.629655167 0.044235302 461.128137 1077626.089 0.023277751 0.011358564 5.34E-09 8.272136448 -0.127356824 AFHITNDEPIPFWT(ph)FLS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 AFHITNDEPIPFWTFLSR 18 0 Q15738 Q15738 NSDHL "Sterol-4-alpha-carboxylate 3-dehydrogenase, decarboxylating" 2 AFHITNDEPIPFWT(1)FLS(1)R;AFHITNDEPIPFWT(1)FLS(1)R 85.397 0.0027574 114902000 5510.9 5543.8 4875.8 5684.3 5143.3 5676.9 5572.4 5511.8 10554.7 5135.1 TRUE FALSE 5588.069603 6149.090832 3644.843987 5319.73444 5843.904537 6683.618507 6629.73381 5043.538186 11568.52609 4088.563801 1.366756121 1.50397331 0.891472939 1.301125456 1.429329422 1.634710581 1.621531211 1.233572088 2.829484058 1 11.99737844 -7.178595274 1.590340718 1.700750243 1.254939855 0.138599954 0.46872292 0.758170137 3.826073354 0.191586784 0.185369339 6.63E-08 7.178595274 -0.445810388 AFKES(ph)PKQILDPAASVTGSR ddPTM_K562_Paclitaxel_30min_R1 1 AFKESPKQILDPAASVTGSR 20 2 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 AFKES(1)PKQILDPAASVTGSR 51.566 0.027411 20477000 2676.9 1934.5 6433.3 3408.3 2236.7 2010.8 1832.8 3254.7 3636.7 4387.5 TRUE FALSE 2714.384859 2145.715252 4809.133849 3189.706893 2541.376408 2367.387147 2180.564232 2978.19292 3986.021284 3493.325092 0.7770204 0.614232914 1.376663701 0.913086188 0.727494963 0.677688759 0.624208791 0.852538153 1.141039319 1 11.77038519 -8.689949605 6.502021371 1.068750523 0.81929515 0.186051274 0.20984367 0.353383432 24.71918048 0.158024299 0.057376419 2.04E-09 8.689949605 -0.249455373 AFKPEETSSNSDPPS(ph)PPVLNNSHPVPR ddPTM_K562_Paclitaxel_30min_R1 2 AFKPEETSSNSDPPSPPVLNNSHPVPR 27 1 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 AFKPEET(0.001)S(0.003)S(0.003)NS(0.003)DPPS(0.99)PPVLNNS(0.001)HPVPR;AFKPEET(0.003)S(0.034)S(0.034)NS(0.034)DPPS(0.892)PPVLNNS(0.001)HPVPR 88.418 3.24E-06 81560000 3521.7 3071.03 5949.6 3810.7 3153.4 2742.79 2460.28 3751.5 3294.19 4531 TRUE FALSE 3571.014665 3406.335441 4447.549896 3566.298758 3582.946468 3229.185296 2927.105286 3432.786659 3610.611668 3607.579713 0.989864383 0.944216265 1.232834823 0.988557161 0.993171808 0.89511128 0.811376468 0.951548388 1.00084044 1 11.81681556 -6.889200142 2.515027771 0.923025657 1.048389242 0.244372124 0.088147479 0.387544699 4.985497485 0.030993225 0.036218754 1.29E-07 6.889200142 0.125363585 AFLAELEQNS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 AFLAELEQNSPK 12 0 H3BPE1;H3BQK9;Q9UPN3;H0Y390;A0A590UJG2;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3-5 H3BPE1 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 AFLAELEQNS(1)PK;AFLAELEQNS(1)PK 177.21 0.0004408 37953000 7381.5 5992.9 11689.4 8233.9 6226.6 5632.2 5551 8473.3 5272.7 9464.2 TRUE FALSE 7484.863774 6647.225089 8738.266397 7705.814508 7074.768337 6630.99159 6604.273272 7753.440276 5779.166394 7535.390845 0.993294698 0.882134082 1.159630148 1.022616433 0.938872115 0.879979782 0.876434071 1.028936712 0.766936515 1 12.87946663 -6.869411116 4.330802049 0.910209538 1.015116367 0.223673072 0.091625968 0.339859392 11.26135348 0.028673596 0.033063817 1.35E-07 6.869411116 0.104906829 AFLASLS(ph)PAMVVPEDQLTR ddPTM_K562_Paclitaxel_30min_R1 1 AFLASLSPAMVVPEDQLTR 19 0 H3BSY1;Q9H211 H3BSY1 CDT1 DNA replication factor Cdt1 1 AFLAS(0.412)LS(0.57)PAMVVPEDQLT(0.018)R 64.298 0.029537 27956000 230 254.66 275.85 380.9 119.89 253.01 389.49 259.62 211.68 393.76 TRUE FALSE 233.2207096 282.46464 206.2082558 356.4707788 136.2210478 297.8777711 463.3936942 237.5636605 232.0128098 313.5114959 0.74389843 0.900970598 0.657737463 1.137026181 0.434500966 0.950133488 1.478075606 0.757751035 0.740045622 1 8.292374535 -7.504698074 24.98250715 1.008112625 0.785138477 0.148901963 0.251712599 1487.974574 2044667.834 0.09015084 0.078010101 3.13E-08 7.504698074 -0.222974148 AFNHS(ph)CSLTR ddPTM_K562_Paclitaxel_30min_R1 2 AFNHSCSLTR 10 0 A0A087X1I5;Q68DY1-2;Q68DY1 A0A087X1I5 ZNF626 Zinc finger protein 626 1 AFNHS(0.977)CS(0.014)LT(0.009)R;AFNHS(0.972)CS(0.028)LTR 84.821 0.027563 35498000 1791.93 2028.86 2404.7 2214.27 2166.95 2196.7 1873.23 2400.5 1700.31 2805.1 TRUE FALSE 1817.022549 2250.377796 1797.603744 2072.256633 2462.125277 2586.253902 2228.665614 2196.562542 1863.632373 2233.41908 0.81356095 1.007593163 0.804866297 0.927840481 1.102401828 1.157979676 0.997871664 0.983497706 0.834430219 1 11.12503827 -5.255807612 23.62013875 0.981996901 0.813560788 0.194149401 0.101382899 525.5581276 2204087.968 0.027565442 0.22893055 5.55E-06 5.255807612 -0.168436113 AFNSPS(ph)HLIR ddPTM_K562_Paclitaxel_30min_R1 2 AFNSPSHLIR 10 0 A2RRD8 A2RRD8 ZNF320 Zinc finger protein 320 1 AFNS(0.042)PS(0.958)HLIR;AFNS(0.106)PS(0.894)HLIR 115.29 0.0040214 64719000 3806.4 3646.6 5461.7 4826.3 3613.1 3923.9 3377.9 4477.2 3197.6 5091.8 TRUE FALSE 3859.701344 4044.74812 4082.826286 4516.76272 4105.26539 4619.748571 4018.838891 4096.833914 3504.743767 4054.088365 0.952051607 0.997696092 1.007088627 1.114125375 1.012623559 1.139528337 0.991305203 1.010543813 0.864496146 1 11.98516182 -8.592520776 7.519042295 0.932323077 1.03279675 0.284607552 0.061433027 0.294046083 26.81905518 0.041924659 0.015631022 2.56E-09 8.592520776 0.100473673 AFNY(ph)IAEEFDIS(ph)EAFISIVHMYQK ddPTM_K562_Paclitaxel_30min_R1 1 AFNYIAEEFDISEAFISIVHMYQK 24 0 Q9NYU1 Q9NYU1 UGGT2 UDP-glucose:glycoprotein glucosyltransferase 2 2 AFNY(1)IAEEFDIS(0.995)EAFIS(0.003)IVHMY(0.003)QK 45.07 0.030499 0 358.76 251.51 547.17 371.49 414.99 238.13 306.4 425.41 235.7 549.56 TRUE FALSE 363.7837469 278.9707124 409.0301662 347.6642941 471.5186638 280.359012 364.5378005 389.2687652 258.3400381 437.5593703 0.831392884 0.637560823 0.934799238 0.79455342 1.07761071 0.640733649 0.833116201 0.889636451 0.590411395 1 8.773334972 -5.76211604 24.99996533 0.839936908 0.734476883 0.082146359 0.147110339 44.89504445 1658993.294 0.036385484 0.083794127 1.73E-06 5.76211604 -0.105460025 AFPERVY(ph)VMEDIT(ph)FNVK ddPTM_K562_Paclitaxel_30min_R1 1 AFPERVYVMEDITFNVK 17 1 Q9H706-2;Q9H706-3;Q9H706 Q9H706-2 GAREM GRB2-associated and regulator of MAPK protein 2 AFPERVY(1)VMEDIT(1)FNVK 50.098 0.028672 130850000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 AFRISS(ph)QLAT(ph)HQR ddPTM_K562_Paclitaxel_30min_R1 1 AFRISSQLATHQR 13 1 Q9BX82 Q9BX82 ZNF471 Zinc finger protein 471 2 AFRIS(0.031)S(0.969)QLAT(1)HQR 107.09 0.01687 28957000 0 128.11 0 144.58 0 0 0 0 0 0 TRUE FALSE 0 142.097483 0 135.3072859 0 0 0 0 0 0 0 AFRLHS(ph)S(ph)LIQHQR ddPTM_K562_Paclitaxel_30min_R1 4 AFRLHSSLIQHQR 13 1 Q9Y2G7 Q9Y2G7 ZFP30 Zinc finger protein 30 homolog 2 AFRLHS(1)S(1)LIQHQR;AFRLHS(1)S(1)LIQHQR;AFRLHS(1)S(1)LIQHQR;AFRLHS(1)S(1)LIQHQR 93.237 0.014043 7048999000 6686.95 16627.1 7730.86 9423.8 6936.96 7292.59 6849.88 7291.72 6208.62 9815.5 TRUE FALSE 6780.587931 18442.50301 5779.108779 8819.399647 7881.891396 8585.828443 8149.608971 6672.242873 6804.985692 7815.095712 0.867626985 2.35985632 0.739480231 1.128508207 1.008547008 1.098621023 1.042803476 0.853763424 0.870748861 1 12.93204783 -5.799475279 24.99999969 0.977130614 1.613748214 0.349739329 0.352120648 140.6241767 92428.15491 0.083820984 0.174493098 1.59E-06 5.799475279 0.6366176 AFVEDS(ph)EDEDGAGEGGSSLLQK ddPTM_K562_Paclitaxel_30min_R1 1 AFVEDSEDEDGAGEGGSSLLQK 22 0 H0YFD2;F8WFC1;A0A494C108;Q8N9T8 H0YFD2 KRI1 Protein KRI1 homolog 1 AFVEDS(1)EDEDGAGEGGSSLLQK 140.41 1.30E-16 12927000 1996.3 1939.5 3731.9 2375.5 1844.9 1908.6 1649.4 2822.8 2105.3 2985.6 TRUE FALSE 2024.254359 2151.261169 2789.735689 2223.146062 2096.206614 2247.063412 1962.36504 2582.985521 2307.523472 2377.133081 0.851552812 0.904981377 1.173571523 0.935221541 0.881821313 0.945282967 0.825517534 1.086596935 0.970716991 1 11.21500696 -8.284103063 24.94753621 1.021492702 0.938258671 0.153998805 0.093397222 1752.265682 1928832.617 0.05315243 0.025562917 5.20E-09 8.284103063 -0.083234031 AFVEDS(ph)EDEDGAGEGGSSLLQKR ddPTM_K562_Paclitaxel_30min_R1 1 AFVEDSEDEDGAGEGGSSLLQKR 23 1 H0YFD2;F8WFC1;A0A494C108;Q8N9T8 H0YFD2 KRI1 Protein KRI1 homolog 1 AFVEDS(1)EDEDGAGEGGSSLLQKR 158.75 1.25E-18 56651000 1289 718.15 1611 1165.9 906.65 1080.5 1042 1153.5 2042.7 1239.1 TRUE FALSE 1307.049977 796.5600456 1204.283125 1091.124392 1030.15108 1272.111504 1239.71406 1055.502975 2238.910462 986.5707398 1.32484162 0.807402869 1.2206759 1.105976843 1.044173558 1.289427562 1.256589123 1.069870545 2.269386646 1 9.94627869 AFWMAIGGDRDEIEGLS(ph)S(ph)DEEH ddPTM_K562_Paclitaxel_30min_R1 2 AFWMAIGGDRDEIEGLSSDEEH 22 1 Q6PD74-2;Q6PD74 Q6PD74-2 AAGAB Alpha- and gamma-adaptin-binding protein p34 2 AFWMAIGGDRDEIEGLS(1)S(1)DEEH;AFWMAIGGDRDEIEGLS(1)S(1)DEEH 70.335 0.0056655 19290100 5400.9 5673.1 5621.5 5259.1 5037.3 4973.7 4578.9 5922.2 5318.2 6302.2 TRUE FALSE 5476.529263 6292.508243 4202.282799 4921.804865 5723.465542 5855.715861 5447.722372 5419.072145 5829.036872 5017.808181 1.091418617 1.254035231 0.837473783 0.98086748 1.140630597 1.16698679 1.085677685 1.079967976 1.161669929 1 12.29284161 -6.77854297 24.98048216 1.11187157 1.041635291 0.080050942 0.106550753 656.6764133 959098.1933 0.034604669 0.039337879 1.67E-07 6.77854297 -0.07023628 AFWMAIGGDRDEIEGLSS(ph)DEEH ddPTM_K562_Paclitaxel_30min_R1 2 AFWMAIGGDRDEIEGLSSDEEH 22 1 Q6PD74-2;Q6PD74 Q6PD74-2 AAGAB Alpha- and gamma-adaptin-binding protein p34 1 AFWMAIGGDRDEIEGLS(0.132)S(0.868)DEEH;AFWMAIGGDRDEIEGLS(0.149)S(0.851)DEEH 104.26 0.00011682 35474800 1477.65 1088.67 1165.55 1127.77 1045.6 1414.2 1284.81 1564.54 1013.9 2030.69 TRUE FALSE 1498.341659 1207.534672 871.2924872 1055.43988 1188.028422 1664.988514 1528.59599 1431.622561 1111.289625 1616.834263 0.926713203 0.746851239 0.538887941 0.652781738 0.734786768 1.029783047 0.945425283 0.885447936 0.687324391 1 10.65895608 -7.112408539 6.980731312 0.904130156 0.704431741 0.365068174 0.124657318 0.297035052 16.41182785 0.043440617 0.04353725 7.72E-08 7.112408539 -0.199698414 AGAAAGDS(ph)DEESRADDKGVMDYYLK ddPTM_K562_Paclitaxel_30min_R1 1 AGAAAGDSDEESRADDKGVMDYYLK 25 2 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 AGAAAGDS(0.5)DEES(0.5)RADDKGVMDY(0.001)YLK 68.458 0.011785 33445000 995.47 875.81 2670.1 1063.1 564.72 689.71 742.82 1292.2 1340.9 1534.1 TRUE FALSE 1009.409651 971.4338976 1996.000232 994.9175243 641.6444248 812.0203845 883.7662172 1182.419544 1469.699436 1221.449578 0.826403046 0.79531232 1.634124132 0.81453835 0.525313886 0.664800577 0.723538845 0.968046136 1.203242003 1 10.25437859 -6.428636755 23.2129585 0.815697827 1.084290814 0.132430436 0.278440943 57.2118343 14085.37015 0.082382157 0.122192435 3.73E-07 6.428636755 0.268592987 AGADGPPAPPGAPQAPS(ph)PPQGSPQDQHHFLR ddPTM_K562_Paclitaxel_30min_R1 2 AGADGPPAPPGAPQAPSPPQGSPQDQHHFLR 31 0 Q96RY5 Q96RY5 CRAMP1L Protein cramped-like 1 AGADGPPAPPGAPQAPS(1)PPQGSPQDQHHFLR;AGADGPPAPPGAPQAPS(1)PPQGSPQDQHHFLR 157.61 7.22E-46 35188000 2799.54 2594.52 3707.37 2967.11 2945.78 2799.28 2720.05 3370.81 3209.56 3684.59 TRUE FALSE 2838.742197 2877.798468 2771.398591 2776.812845 3347.045108 3295.693004 3236.165288 3084.438651 3517.852579 2933.668535 0.967642446 0.980955562 0.944687022 0.946532579 1.14090773 1.123403331 1.10311211 1.05139303 1.199130896 1 11.51849016 -6.756538837 24.99999323 1.106587493 0.960363933 0.659083128 0.050357136 70.28751481 358568.0223 0.014259818 0.017820426 1.75E-07 6.756538837 -0.146223561 AGAES(ph)PTMSVDGR ddPTM_K562_Paclitaxel_30min_R1 2 AGAESPTMSVDGR 13 0 O75362 O75362 ZNF217 Zinc finger protein 217 1 AGAES(0.495)PT(0.495)MS(0.011)VDGR;AGAES(0.937)PT(0.063)MSVDGR 138.31 4.01E-05 88408000 2994 2816.3 3613.7 3490.3 2840.9 2583.3 2507.6 3666.4 1873.73 3563.7 TRUE FALSE 3035.925237 3123.793158 2701.376741 3266.44778 3227.878677 3041.411984 2983.404009 3354.916435 2053.710139 2837.415984 1.06996128 1.100928865 0.952055235 1.15120511 1.137612072 1.071894992 1.051451048 1.182384414 0.723795929 1 11.47036196 -8.754732245 24.99977027 0.861897947 1.087254214 0.528236176 0.086082764 102.963639 383791.124 0.057578101 0.020652267 1.76E-09 8.754732245 0.225356267 AGAGMITQHS(ph)SNASPINR ddPTM_K562_Paclitaxel_30min_R1 1 AGAGMITQHSSNASPINR 18 0 Q9NWH9-3;Q9NWH9;H7C3F4;H0YKH2 Q9NWH9-3 SLTM SAFB-like transcription modulator 1 AGAGMIT(0.015)QHS(0.644)S(0.127)NAS(0.214)PINR 104.68 0.0010329 0 674.55 685.85 940.64 843.03 645.02 691.28 658.62 817.19 698.12 1025.2 TRUE FALSE 683.9957812 760.7334224 703.1637983 788.9618291 732.8826443 813.8688019 783.5897068 747.7646088 765.1775453 816.2636773 0.837959351 0.9319702 0.86144198 0.966552661 0.89785037 0.997066052 0.959971304 0.91608218 0.93741467 1 9.67289145 -2.358010424 0.344384644 0.96198733 2.64E-15 0.471762043 0.037120974 44.45912557 0.796041407 0.031261147 26.53573232 0.004385202 2.358010424 -0.96198733 AGAGMITQHSS(ph)NASPINR ddPTM_K562_Paclitaxel_30min_R1 5 AGAGMITQHSSNASPINR 18 0 Q9NWH9-3;Q9NWH9;H7C3F4;H0YKH2 Q9NWH9-3 SLTM SAFB-like transcription modulator 1 AGAGMITQHS(0.029)S(0.553)NAS(0.418)PINR;AGAGMIT(0.013)QHS(0.076)S(0.767)NAS(0.144)PINR;AGAGMITQHS(0.21)S(0.395)NAS(0.395)PINR;AGAGMITQHS(0.009)S(0.84)NAS(0.151)PINR;AGAGMITQHS(0.07)S(0.589)NAS(0.34)PINR 148.19 5.27E-10 328300000 11271.2 10441.9 12947 11358.7 9698.4 9874.3 9743.24 12055.8 9708.1 12906.4 TRUE FALSE 11429.03157 11581.98195 9678.369724 10630.20382 11019.48628 11625.36846 11591.96893 11031.58454 10640.60638 10276.0686 1.11219884 1.127082974 0.941835843 1.034462131 1.072344562 1.131305066 1.128054841 1.073521886 1.035474441 1 13.32700081 AGAGMITQHSSNAS(ph)PINR ddPTM_K562_Paclitaxel_30min_R1 2 AGAGMITQHSSNASPINR 18 0 Q9NWH9-3;Q9NWH9;H7C3F4;H0YKH2 Q9NWH9-3 SLTM SAFB-like transcription modulator 1 AGAGMITQHS(0.027)S(0.342)NAS(0.631)PINR;AGAGMITQHS(0.004)S(0.09)NAS(0.906)PINR 142.55 1.82E-10 321200000 5098.7 5286.7 6171.3 5488.6 5192.2 4725.4 5239.2 6348.9 5413.3 6300.3 TRUE FALSE 5170.097531 5863.919784 4613.278989 5136.585762 5899.465545 5563.383342 6233.31085 5809.521316 5933.271652 5016.295402 1.030660501 1.168974176 0.919658557 1.02397992 1.176060234 1.109062146 1.242612396 1.158129825 1.182799492 1 12.29240659 -6.759325082 25 1.155789839 1.037032283 0.294393426 0.081568511 66.30579751 784009.8748 0.024044108 0.02952452 1.74E-07 6.759325082 -0.118757556 AGAPGALS(ph)PSYDGGLHGLQSK ddPTM_K562_Paclitaxel_30min_R1 4 AGAPGALSPSYDGGLHGLQSK 21 0 K7ENH8;A0A0A0MRB7;P15923-2;X6REB3;P15923;P15923-3 K7ENH8 TCF3 Transcription factor E2-alpha 1 AGAPGALS(0.5)PS(0.5)YDGGLHGLQSK;AGAPGALS(0.995)PS(0.005)YDGGLHGLQSK;AGAPGALS(0.99)PS(0.01)YDGGLHGLQSK;AGAPGALS(0.996)PS(0.004)YDGGLHGLQSK 152.13 1.00E-17 474455000 16790.4 14814 29211.3 19276.1 15430.1 12591.4 12742.1 19232 17600.2 23516.9 TRUE FALSE 17025.5174 16431.44262 21836.54603 18039.81722 17531.94085 14824.308 15159.84696 17598.12156 19290.77785 18724.14287 0.909281537 0.877553794 1.166224066 0.963452231 0.936328086 0.791721581 0.809641705 0.939862598 1.030262265 1 14.19261206 AGAPHALAPHPDRFS(ph)HDR ddPTM_K562_Paclitaxel_30min_R1 1 AGAPHALAPHPDRFSHDR 18 1 Q9H9J4-2;Q9H9J4;C9JPC9 Q9H9J4-2 USP42 Ubiquitin carboxyl-terminal hydrolase 42 1 AGAPHALAPHPDRFS(1)HDR 65.287 0.016225 23416000 404.6 371.14 614.31 430.12 476.38 340.44 482.98 510.46 412.73 609.93 TRUE FALSE 410.2656483 411.6623203 459.2198428 402.5340283 541.2710212 400.812254 574.6229337 467.0932368 452.3745606 485.6259312 0.844818248 0.847694272 0.945624633 0.828897311 1.114584264 0.825351836 1.183262459 0.961837511 0.931528841 1 8.92370165 -6.73997169 24.99990291 1.001007366 0.871030145 0.325246217 0.095867223 296.1640149 344892.2375 0.027067546 0.034909706 1.82E-07 6.73997169 -0.129977221 AGAPVGGS(ph)PGLAK ddPTM_K562_Paclitaxel_30min_R1 2 AGAPVGGSPGLAK 13 0 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2 A0A0A0MS59 SRCAP Helicase SRCAP 1 AGAPVGGS(1)PGLAK;AGAPVGGS(1)PGLAK 143.58 5.06E-05 25451000 4998.4 4079.3 7733.6 5473.8 3904.4 3729.8 3659.9 5350.2 4842.7 6209.3 TRUE FALSE 5068.393021 4524.691769 5781.157032 5122.734968 4436.245382 4391.227661 4354.346919 4895.667115 5307.862973 4943.841252 1.025193319 0.915217852 1.169365426 1.036185166 0.897327636 0.888221817 0.880761881 0.990255727 1.073631353 1 12.2714167 -4.908219497 18.65525385 0.981042016 3.301496439 0.019191632 0.088054625 1223.339955 263320.9061 0.022971788 7054.437757 1.24E-05 4.908219497 2.320454424 AGASIPSSGAAS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 AGASIPSSGAASPR 14 0 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 AGASIPSSGAAS(1)PR;AGASIPSSGAAS(1)PR;AGASIPSSGAAS(1)PR 179.46 3.23E-06 132772000 4861.03 4239.09 5823.9 4528.53 3817.76 4457.9 3750.6 4814.6 2622.7 5431.4 TRUE FALSE 4929.099418 4701.928182 4353.584416 4238.090355 4337.803547 5248.445973 4462.256771 4405.569678 2874.622054 4324.477699 1.139813814 1.087282329 1.00673069 0.980023635 1.003081493 1.213660085 1.03186028 1.018751855 0.664732773 1 12.07831018 -8.594387025 8.833606491 0.833008197 1.061778986 0.458738868 0.100042737 0.256663642 28.74024412 0.065920433 0.024747031 2.54E-09 8.594387025 0.228770789 AGDNSQSVY(ph)IPMSPGAHHFDSLGYPSTTLPVHR ddPTM_K562_Paclitaxel_30min_R1 1 AGDNSQSVYIPMSPGAHHFDSLGYPSTTLPVHR 33 0 Q9UQC2;Q9UQC2-2 Q9UQC2 GAB2 GRB2-associated-binding protein 2 1 AGDNS(0.001)QS(0.006)VY(0.986)IPMS(0.006)PGAHHFDSLGYPSTTLPVHR 73.771 1.30E-05 15455000 449.39 450.77 620.61 666.29 527.29 352.91 525.26 622.19 756.91 722.45 TRUE FALSE 455.6828465 499.986593 463.9293299 623.5571416 599.1158251 415.4936334 624.925343 569.3310759 829.6145875 575.2142934 0.792196668 0.869217957 0.806533035 1.084043197 1.041552395 0.722328423 1.086421791 0.989772129 1.442270467 1 9.167955715 -8.288577248 2.046290297 1.19987338 0.902201055 0.356150471 0.1572461 0.367423862 2.870852152 0.111322261 0.044486053 5.15E-09 8.288577248 -0.297672326 AGDPGEMPQS(ph)PTGLGQPK ddPTM_K562_Paclitaxel_30min_R1 4 AGDPGEMPQSPTGLGQPK 18 0 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9;A0A0C4DGI9;H0YHL2 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 AGDPGEMPQS(0.973)PT(0.027)GLGQPK;AGDPGEMPQS(0.996)PT(0.004)GLGQPK;AGDPGEMPQS(0.943)PT(0.057)GLGQPK;AGDPGEMPQS(0.527)PT(0.473)GLGQPK 209.23 1.78E-19 66496000 9394.82 7301.13 16857.1 10480.08 7723.71 6850.5 6619.77 9988.82 8743.04 12752.91 TRUE FALSE 9526.376466 8098.292064 12601.31662 9807.934576 8775.810065 8065.339989 7875.8368 9140.207393 9582.848057 10153.85994 0.938202469 0.797557984 1.241037073 0.965931639 0.864283151 0.794312708 0.775649541 0.900170718 0.943764057 1 13.30974064 -6.71507121 5.345446251 0.865036725 0.992428292 0.154685736 0.119009706 0.334332584 21.49164078 0.036897609 0.047002505 1.93E-07 6.71507121 0.127391567 AGDPGEMPQSPT(ph)GLGQPK ddPTM_K562_Paclitaxel_30min_R1 2 AGDPGEMPQSPTGLGQPK 18 0 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9;A0A0C4DGI9;H0YHL2 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 AGDPGEMPQS(0.218)PT(0.782)GLGQPK;AGDPGEMPQS(0.226)PT(0.774)GLGQPK 148.97 2.53E-10 50122000 4250.6 3675 7716.8 4183.7 3737.2 3331.7 2986.1 4825.5 4138.8 5423.6 TRUE FALSE 4310.121514 4076.248928 5768.5984 3915.376208 4246.269911 3922.530216 3552.696887 4415.543655 4536.350233 4318.267343 0.998113635 0.94395474 1.335859488 0.906700743 0.983327241 0.908357428 0.822713511 1.0225267 1.050502406 1 12.07623685 AGEPNS(ph)PDAEEANS(ph)PDVTAGCDPAGVHPPR ddPTM_K562_Paclitaxel_30min_R1 4 AGEPNSPDAEEANSPDVTAGCDPAGVHPPR 30 0 Q08J23-3;Q08J23-2;Q08J23 Q08J23-3 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 2 AGEPNS(0.994)PDAEEANS(0.936)PDVT(0.07)AGCDPAGVHPPR;AGEPNS(0.999)PDAEEANS(0.999)PDVT(0.002)AGCDPAGVHPPR;AGEPNS(1)PDAEEANS(1)PDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANS(1)PDVTAGCDPAGVHPPR 160.16 3.16E-35 808960000 3649.67 3737.01 5712.14 4074.84 3631.76 3337.17 3243.71 3945.03 3774.97 4676.44 TRUE FALSE 3700.77664 4145.02939 4270.03961 3813.498001 4126.467198 3928.970243 3859.187039 3609.875077 4137.572736 3723.378961 0.993929621 1.113244027 1.146818429 1.024203564 1.108258719 1.055216319 1.036474417 0.969515893 1.111241369 1 11.86239674 -7.621361875 3.190519241 1.02645358 1.080363084 0.150629227 0.053077585 0.444094639 9.023852414 0.021457333 0.01606388 2.39E-08 7.621361875 0.053909504 AGEPNS(ph)PDAEEANSPDVTAGCDPAGVHPPR ddPTM_K562_Paclitaxel_30min_R1 5 AGEPNSPDAEEANSPDVTAGCDPAGVHPPR 30 0 Q08J23-3;Q08J23-2;Q08J23 Q08J23-3 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 AGEPNS(1)PDAEEANSPDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANSPDVTAGCDPAGVHPPR;AGEPNS(0.939)PDAEEANS(0.061)PDVTAGCDPAGVHPPR;AGEPNS(1)PDAEEANSPDVTAGCDPAGVHPPR;AGEPNS(0.947)PDAEEANS(0.053)PDVTAGCDPAGVHPPR 153.77 4.72E-33 1576706000 4955.12 4432.4 6729.15 5548.73 4740.67 4230.08 4135.24 5032.5 5251.62 5797.53 TRUE FALSE 5024.506968 4916.344421 5030.292857 5192.859293 5386.429514 4980.225295 4919.880203 4604.957713 5756.061566 4615.990204 1.088500353 1.06506821 1.089753798 1.124971905 1.166906617 1.07890725 1.065834195 0.997609941 1.246983055 1 12.17242445 -10.04203078 12.91311399 1.000007374 1.098901703 0.18849132 0.063499801 0 0 0.059700422 0.014479479 9.08E-11 10.04203078 0.098894328 AGEPNSPDAEEANS(ph)PDVTAGCDPAGVHPPR ddPTM_K562_Paclitaxel_30min_R1 3 AGEPNSPDAEEANSPDVTAGCDPAGVHPPR 30 0 Q08J23-3;Q08J23-2;Q08J23 Q08J23-3 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 AGEPNS(0.002)PDAEEANS(0.956)PDVT(0.042)AGCDPAGVHPPR;AGEPNS(0.009)PDAEEANS(0.917)PDVT(0.074)AGCDPAGVHPPR;AGEPNS(0.014)PDAEEANS(0.986)PDVT(0.001)AGCDPAGVHPPR 148.6 2.18E-44 234614000 2153.44 2442.7 3452.42 2815.55 2030.3 2025.59 1941.85 2357.87 2534.19 2517.88 TRUE FALSE 2183.594804 2709.402247 2580.813872 2634.973225 2306.861233 2384.799946 2310.3059 2157.554226 2777.610273 2004.734674 1.089218854 1.351501664 1.287359323 1.314375044 1.150706507 1.189583827 1.152424772 1.076229316 1.385525131 1 10.96919559 -6.772497532 24.72586878 1.164082311 1.269016118 0.161551924 0.112324554 331.4933114 741212.3334 0.03310652 0.037904335 1.69E-07 6.772497532 0.104933807 AGFTASPFTNLLNGS(ph)S(ph)QPT(ph)TR ddPTM_K562_Paclitaxel_30min_R1 1 AGFTASPFTNLLNGSSQPTTR 21 0 A0A2R8Y6L0;A0A0U1RQX7;A0A2R8YDJ8;Q9UNH5;Q9UNH5-5;Q9UNH5-2 A0A2R8Y6L0 CDC14A Dual specificity protein phosphatase CDC14A 3 AGFTASPFTNLLNGS(0.991)S(0.991)QPT(0.916)T(0.102)R 57.171 0.029982 20112000 186.07 259.78 353.48 279.23 285.11 231.13 208.55 251.64 258.17 272.43 TRUE FALSE 188.6755541 288.1436589 264.2396022 261.3214376 323.946809 272.1176603 248.1212738 230.2616113 282.968382 216.9086165 0.869838908 1.328410386 1.218207034 1.204753605 1.493471372 1.254526744 1.143897729 1.061560463 1.304551136 1 7.760943553 -10.36694668 0.576993737 0.975590262 1.223647014 0.126217445 0.158285373 17.34821797 5.2025237 1.101030936 0.067944263 4.30E-11 10.36694668 0.248056751 AGGAS(ph)PAASSTAQPPTQHR ddPTM_K562_Paclitaxel_30min_R1 6 AGGASPAASSTAQPPTQHR 19 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR;AGGAS(1)PAASSTAQPPTQHR 141.7 6.46E-13 279398800 6786.75 6268.72 8118.18 6622.21 6489.39 6265.44 6209.97 7129.29 6805.84 8137.66 TRUE FALSE 6881.785439 6953.160049 6068.645055 6197.491091 7373.354784 7376.527813 7388.279389 6523.612315 7459.571341 6479.200425 1.062134984 1.073150943 0.936634871 0.956520972 1.138003812 1.138493538 1.140307276 1.006854532 1.151310478 1 12.66160007 -6.766212497 24.99996942 1.100528215 1.00679365 0.31492588 0.063877419 145.4136103 761627.801 0.020116432 0.023553433 1.71E-07 6.766212497 -0.093734564 AGGGGGLGAGS(ph)PALSGGQGR ddPTM_K562_Paclitaxel_30min_R1 3 AGGGGGLGAGSPALSGGQGR 20 0 A0A3B3ITT1;Q6IQ22 A0A3B3ITT1 RAB12 Ras-related protein Rab-12 1 AGGGGGLGAGS(1)PALSGGQGR;AGGGGGLGAGS(0.997)PALS(0.003)GGQGR;AGGGGGLGAGS(0.804)PALS(0.196)GGQGR 119.27 3.73E-05 104163800 3014 2989.19 3763.93 3198.96 2595.29 2683.25 2737.3 3588.88 2923.42 3869.8 TRUE FALSE 3056.205299 3315.559873 2813.67932 2993.793024 2948.812437 3159.086713 3256.688385 3283.982243 3204.227553 3081.132636 0.991909684 1.07608476 0.913196429 0.971653407 0.957054689 1.025300461 1.056977667 1.065836052 1.039951191 1 11.58924507 -7.460297182 5.125558189 1.045731277 0.983050608 0.313447043 0.04134164 0.262232531 13.86397723 0.015535786 0.013372126 3.46E-08 7.460297182 -0.062680669 AGGLDWPEATEVS(ph)PSR ddPTM_K562_Paclitaxel_30min_R1 4 AGGLDWPEATEVSPSR 16 0 Q9Y446;Q9Y446-2;E9PKC4;E9PK71;E9PJR7;E9PRW6 Q9Y446 PKP3 Plakophilin-3 1 AGGLDWPEAT(0.001)EVS(0.865)PS(0.134)R;AGGLDWPEAT(0.012)EVS(0.983)PS(0.005)R;AGGLDWPEAT(0.001)EVS(0.975)PS(0.024)R;AGGLDWPEATEVS(0.875)PS(0.125)R 289.59 1.21E-153 945100000 11439.4 11422 14904.9 12574.9 11526.2 10488.1 10478.7 13635 10622.8 13905.3 TRUE FALSE 11599.58689 12669.09259 11141.97365 11768.4022 13096.26358 12348.01727 12466.97862 12476.62164 11643.1674 11071.39223 1.047708062 1.144308893 1.006375117 1.062955946 1.182892206 1.115308447 1.126053379 1.126924364 1.051644379 1 13.43454903 -5.01600849 13.31861004 1.095941117 1.01819341 0.041945444 0.056937446 191871.7442 6300693.361 0.014142542 180548.9211 9.64E-06 5.01600849 -0.077747707 AGGPAT(ph)PLS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 1 AGGPATPLSPTR 12 0 Q03252 Q03252 LMNB2 Lamin-B2 2 AGGPAT(1)PLS(0.938)PT(0.062)R 103.97 0.016528 16108000 4007.7 2493.9 4374.4 3374.2 3123.2 2927 2615.1 3466.3 3313.4 3827.9 TRUE FALSE 4063.820165 2766.192436 3270.028618 3157.793914 3548.632716 3446.062353 3111.301573 3171.816179 3631.666875 3047.771879 1.333374126 0.907611378 1.072924336 1.03609917 1.164336721 1.130682508 1.020844636 1.040699995 1.191580938 1 11.57353921 -11.28118938 0.007605123 8.44E-07 2.097142914 0.049643836 0.110510745 49196.09528 64.63252662 9363.430758 8473.188823 5.23E-12 11.28118938 2.097142069 AGGPAT(ph)PLSPTR ddPTM_K562_Paclitaxel_30min_R1 2 AGGPATPLSPTR 12 0 Q03252 Q03252 LMNB2 Lamin-B2 1 AGGPAT(1)PLSPTR;AGGPAT(0.999)PLSPTR 134.56 0.0010671 53358000 4979.1 4814.4 6772 5349.2 4932 4492.3 4207.3 5739.3 5077.9 5897.4 TRUE FALSE 5048.822762 5340.052473 5062.324845 5006.126254 5603.821899 5288.94633 5005.613211 5251.710641 5565.654984 4695.506643 1.07524558 1.137268644 1.078121112 1.066152523 1.193443504 1.126384591 1.066043261 1.118454523 1.185315112 1 12.19706512 -5.224689462 21.42372983 1.111317161 1.075245028 0.027069955 0.055457138 9949.1533 5799227.639 0.013317336 1.934436801 5.96E-06 5.224689462 -0.036072133 AGGPATPLS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 1 AGGPATPLSPTR 12 0 Q03252 Q03252 LMNB2 Lamin-B2 1 AGGPAT(0.003)PLS(0.886)PT(0.11)R 116.98 0.0036944 38659000 2130.7 1768.6 2897.3 2114.2 1811.3 1638 1355.1 2541.7 1816 2782.5 TRUE FALSE 2160.536374 1961.701729 2165.840782 1978.604675 2058.029726 1928.476301 1612.223151 2325.76672 1990.434914 2215.424973 0.975224348 0.885474233 0.977618655 0.893103896 0.928954829 0.870476918 0.72772636 1.049806132 0.898443837 1 11.11336775 AGGPTT(ph)PLS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 2 AGGPTTPLSPTR 12 0 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 2 AGGPT(0.031)T(0.969)PLS(0.758)PT(0.242)R;AGGPT(0.012)T(0.988)PLS(0.841)PT(0.159)R 120.6 0.0051658 128579000 14132.8 13477.4 16526.9 14324.5 11435.3 11276.3 11145.6 14223.9 12125.8 15883.2 TRUE FALSE 14330.7028 14948.90811 12354.47969 13405.79068 12992.98146 13275.99348 13260.41942 13015.49091 13290.53727 12646.19512 1.133202727 1.182087416 0.976932554 1.060065146 1.027422188 1.049801411 1.048569889 1.029202127 1.050951463 1 13.62641576 -5.752159952 24.99999958 1.033710538 1.157645116 0.784712782 0.026620325 78.465135 211391.0785 0.006321322 0.016246948 1.77E-06 5.752159952 0.123934579 AGGPTT(ph)PLSPT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 AGGPTTPLSPTR 12 0 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 2 AGGPT(0.002)T(0.998)PLS(0.122)PT(0.878)R 122.1 0.020567 34320000 5383.9 5183.2 6154.7 5417.5 4487.8 4354.6 4369.5 5313.1 5061.4 6327.4 TRUE FALSE 5459.291211 5749.119304 4600.869865 5070.045798 5099.114339 5126.827168 5198.589815 4861.718992 5547.570085 5037.872407 1.083650154 1.141180014 0.913256528 1.006386305 1.012156309 1.017657208 1.031901842 0.965034165 1.101173201 1 12.29859887 -5.737060952 24.99997888 1.006279704 1.112415147 0.453289134 0.046769732 196.3434751 201346.4664 0.011349866 0.029997229 1.83E-06 5.737060952 0.106135443 AGGPTT(ph)PLSPTR ddPTM_K562_Paclitaxel_30min_R1 1 AGGPTTPLSPTR 12 0 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 1 AGGPT(0.224)T(0.776)PLSPTR 166.11 0.0021433 44011000 2129.2 2032.6 2132.3 2326.2 1960.6 1478.9 1380 1877.4 1910.3 2415.2 TRUE FALSE 2159.015369 2254.526142 1593.974493 2177.007944 2227.666913 1741.16215 1641.847796 1717.903152 2093.79285 1922.980914 1.122744044 1.172412126 0.828908119 1.13210065 1.15844463 0.905449522 0.85380348 0.893354239 1.088826641 1 10.90912873 -7.274944514 24.75365476 0.935716204 1.076513869 0.270644367 0.109288781 965.3783802 1769443.634 0.039556319 0.035094633 5.31E-08 7.274944514 0.140797665 AGGPTTPLS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 3 AGGPTTPLSPTR 12 0 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 1 AGGPTT(0.001)PLS(0.738)PT(0.261)R;AGGPT(0.008)T(0.017)PLS(0.898)PT(0.078)R;AGGPTTPLS(0.999)PT(0.001)R 164.22 0.0011978 230176000 5283.8 4967.1 7099.9 6014.4 5210.9 5396 4949 6306 5598.4 5906.2 TRUE FALSE 5357.789502 5509.424776 5307.442435 5628.663303 5920.712801 6352.904836 5888.046914 5770.265939 6136.151334 4702.513198 1.139345979 1.17159156 1.128639562 1.196947901 1.259052883 1.350959491 1.252106409 1.22706002 1.304866372 1 12.19921628 -6.545971605 3.690434017 1.250193935 1.149783618 0.141166829 0.08802223 0.347526624 10.22824812 0.025035149 0.034785322 2.84E-07 6.545971605 -0.100410316 AGGSAALS(ph)PSK ddPTM_K562_Paclitaxel_30min_R1 2 AGGSAALSPSK 11 0 Q92522 Q92522 H1FX Histone H1x 1 AGGSAALS(0.999)PS(0.001)K;AGGSAALS(0.993)PS(0.006)K 158.25 0.00040299 685610000 10234 8233.5 17598.6 11781.6 8334 7949.5 7562.2 11334.7 9074.8 13793.8 TRUE FALSE 10377.30757 9132.461374 13155.61577 11025.98091 9469.231896 9359.232208 8997.087973 10371.74649 9946.475087 10982.61599 0.94488486 0.831537894 1.197858123 1.003948506 0.862201857 0.852186056 0.819211742 0.944378507 0.905656275 1 13.42293412 -6.755085585 24.8504587 0.888333978 0.997434607 0.192433124 0.09652617 226.6277124 886362.404 0.029746854 0.037453367 1.76E-07 6.755085585 0.109100629 AGGSAALS(ph)PSKK ddPTM_K562_Paclitaxel_30min_R1 1 AGGSAALSPSKK 12 1 Q92522 Q92522 H1FX Histone H1x 1 AGGS(0.001)AALS(0.851)PS(0.148)KK 137.8 0.00032661 30312000 1661.8 1138.6 3427.8 2208 1345.4 1088.3 1026.3 1789 1639.3 2268 TRUE FALSE 1685.070327 1262.916198 2562.409496 2066.388763 1528.666258 1281.294725 1221.035067 1637.013283 1796.76209 1805.780355 0.933153538 0.699374204 1.419003972 1.144318996 0.846540529 0.709551813 0.676181388 0.906540643 0.99500589 1 10.81840671 -6.802016299 11.64642195 0.834565968 1.050379813 0.186027807 0.195141249 1.232215082 350.2636639 0.064697764 0.073510859 1.58E-07 6.802016299 0.215813845 AGIHPLS(ph)LGS(ph)VLS(ph)AS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 AGIHPLSLGSVLSASR 16 0 Q969S2-4;Q969S2-3;Q969S2-2;Q969S2 Q969S2-4 NEIL2 Endonuclease 8-like 2 4 AGIHPLS(1)LGS(1)VLS(1)AS(1)R 61.186 0.029545 18131000 1339.9 1064.5 1888 1382.3 969.55 915.68 1111.2 1407 872.85 1554.8 TRUE FALSE 1358.662734 1180.72571 1411.35105 1293.645465 1101.619125 1078.062991 1322.044399 1287.466568 956.6911425 1237.930907 1.097527113 0.953789669 1.140088709 1.045006194 0.889887407 0.870858774 1.067946839 1.040014884 0.772814652 1 10.27371508 -6.663041222 7.198737048 0.94540744 1.058925525 0.285987373 0.091960952 0.328128091 20.87502728 0.027528489 0.03554678 2.17E-07 6.663041222 0.113518085 AGISTTSVCEGQIANPS(ph)PISR ddPTM_K562_Paclitaxel_30min_R1 2 AGISTTSVCEGQIANPSPISR 21 0 B4DRX9;Q8WU58 B4DRX9 FAM222B Protein FAM222B 1 AGISTTSVCEGQIANPS(0.976)PIS(0.024)R;AGISTTSVCEGQIANPS(0.982)PIS(0.018)R 219.61 1.51E-37 32564000 837.66 621.37 727.84 768.35 600.96 692.86 507.34 758.03 695.36 904.11 TRUE FALSE 849.3898244 689.2132779 544.0877902 719.07147 682.8209263 815.7289928 603.6051165 693.63062 762.152435 719.8518857 1.179950822 0.957437622 0.755832972 0.998915866 0.94855753 1.133190048 0.838512934 0.963574082 1.058762851 1 9.491556283 AGKYVDEENS(ph)DGETSNHR ddPTM_K562_Paclitaxel_30min_R1 2 AGKYVDEENSDGETSNHR 18 1 H0YFD2;F8WFC1;A0A494C108;Q8N9T8;H0YH26 H0YFD2 KRI1 Protein KRI1 homolog 1 AGKYVDEENS(0.996)DGET(0.003)S(0.001)NHR;AGKYVDEENS(1)DGETSNHR 117.37 0.00011709 51494000 10997 9279.7 18173.5 11379.9 9246.7 8413.4 7127.7 10038.6 21281.7 11580.6 TRUE FALSE 11150.99193 10292.88903 13585.37516 10650.04415 10506.25709 9905.39836 8480.143866 9185.758271 23325.90237 9220.467363 1.20937383 1.116308818 1.473393335 1.155043853 1.139449517 1.074283761 0.91970868 0.996235647 2.5297961 1 13.17062416 AGKYVDEENSDGET(ph)SNHR ddPTM_K562_Paclitaxel_30min_R1 1 AGKYVDEENSDGETSNHR 18 1 H0YFD2;F8WFC1;A0A494C108;Q8N9T8;H0YH26 H0YFD2 KRI1 Protein KRI1 homolog 1 AGKYVDEENS(0.296)DGET(0.542)S(0.162)NHR 137.86 5.30E-09 16534000 1989.6 1444.3 3138.8 1928.8 1336 1631.9 1245.6 2107.7 3637.1 2176.4 TRUE FALSE 2017.460538 1601.993558 2346.37112 1805.095401 1517.985819 1921.294552 1481.946098 1928.637729 3986.459706 1732.848485 1.164245204 0.92448565 1.354054402 1.041692575 0.876006086 1.108749304 0.855208121 1.112986938 2.300524102 1 10.7589298 -8.559284838 24.98594176 1.669094823 1.044517916 0.354470673 0.32238395 163.2764256 112055.8324 0.197379093 0.074602713 2.76E-09 8.559284838 -0.624576907 AGLESGAEPGDGDS(ph)DTTK ddPTM_K562_Paclitaxel_30min_R1 4 AGLESGAEPGDGDSDTTK 18 0 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 AGLESGAEPGDGDS(1)DTTK;AGLESGAEPGDGDS(0.984)DT(0.014)T(0.002)K;AGLESGAEPGDGDS(0.964)DT(0.022)T(0.014)K;AGLESGAEPGDGDS(0.993)DT(0.006)T(0.001)K 273.52 1.18E-114 209236000 15156.3 13583.7 29287.3 18165 13685.9 12216.3 11718.1 18843.3 12929.2 22075.5 TRUE FALSE 15368.53496 15066.8143 21893.35889 16999.9782 15550.15128 14382.68928 13941.5483 17242.44405 14171.10743 17576.50098 0.87437966 0.857213522 1.245603941 0.967199229 0.884712566 0.818290813 0.793192474 0.980994116 0.806253045 1 14.10136028 -6.729233848 4.692762025 0.87146487 0.997613608 0.16004735 0.117696751 0.341098561 17.50143608 0.036833108 0.046372315 1.87E-07 6.729233848 0.126148738 AGLESGAEPGDGDS(ph)DTTKK ddPTM_K562_Paclitaxel_30min_R1 1 AGLESGAEPGDGDSDTTKK 19 1 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 AGLESGAEPGDGDS(0.887)DT(0.056)T(0.056)KK 70.452 0.010819 53472000 2188.4 1476.4 5617.7 2778 1402.6 1397.7 1203.6 2230.5 1530.8 3211.9 TRUE FALSE 2219.044352 1637.598345 4199.442156 2599.831514 1593.657866 1645.56247 1431.976817 2041.005103 1677.84018 2557.313017 0.867724966 0.640358976 1.642130677 1.016626239 0.623176692 0.643473231 0.559953673 0.798105312 0.656094959 1 11.32041304 -6.718238045 7.153165067 0.692296675 1.058334865 0.271490129 0.261720931 0.270811427 35.1507705 0.079622083 0.101942564 1.91E-07 6.718238045 0.36603819 AGLGS(ph)PERPPK ddPTM_K562_Paclitaxel_30min_R1 1 AGLGSPERPPK 11 1 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 AGLGS(1)PERPPK 105.46 0.019134 137990000 1609.4 1993.9 3024.7 1982 1479.9 1289.5 1151.2 2264.5 1406.3 2233.4 TRUE FALSE 1631.936565 2211.600745 2261.077076 1854.883391 1681.487435 1518.17472 1369.63419 2072.11659 1541.381399 1778.231854 0.917729913 1.243707754 1.271531083 1.04310548 0.94559516 0.853755215 0.770222503 1.165267952 0.866805639 1 10.79622773 -6.575610068 3.639528377 0.930311716 1.155542706 0.337463255 0.132089103 0.251575541 6.876859924 0.040452709 0.055098821 2.66E-07 6.575610068 0.22523099 AGLGS(ph)PERPPKTSPGS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 AGLGSPERPPKTSPGSPR 18 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 2 AGLGS(0.997)PERPPKT(0.011)S(0.397)PGS(0.595)PR 165.19 3.33E-09 16341000 2496.8 2462 4542.2 3171.6 2315.2 1886.4 2163.3 2620.6 3370.2 3397.8 TRUE FALSE 2531.762903 2730.809486 3395.465433 2968.187772 2630.569437 2220.926554 2573.774882 2397.963673 3693.922768 2705.326495 0.935843754 1.009419562 1.255103751 1.097164345 0.972366715 0.820945848 0.95137311 0.886386053 1.365425865 1 11.401587 -5.311730132 5.099359469 1.03367696 0.934470144 0.038485199 0.155571169 0.712393688 41.04250967 0.040274444 0.193118861 4.88E-06 5.311730132 -0.099206816 AGLGSAGDMTLSMTGRER ddPTM_K562_Paclitaxel_30min_R1 1 AGLGSAGDMTLSMTGRER 18 1 A0A2R8Y4Z8;Q9Y3X0 A0A2R8Y4Z8;Q9Y3X0 CCDC9 Coiled-coil domain-containing protein 9 0 44.005 0.031081 2017500 1517.5 1181.6 2063.2 1856.7 1435.5 1276.8 1113.3 1576.1 1272.8 2010.5 FALSE TRUE 1538.749682 1310.611084 1542.319643 1737.619572 1631.039403 1503.222553 1324.542863 1442.200467 1395.058127 1600.758996 0.961262554 0.818743538 0.963492722 1.085497302 1.018916281 0.939068627 0.827446771 0.900947907 0.871497915 1 10.6445404 -7.531708647 24.66768781 0.890510061 0.968472787 0.158653054 0.07427675 311.7503483 870911.2181 0.030511689 0.023670379 2.94E-08 7.531708647 0.077962726 AGLGSPERPPKT(ph)S(ph)PGSPR ddPTM_K562_Paclitaxel_30min_R1 1 AGLGSPERPPKTSPGSPR 18 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 2 AGLGS(0.04)PERPPKT(0.796)S(0.754)PGS(0.41)PR 92.943 0.0017346 19145000 4390.3 3794.9 7136.9 4763.2 4338.1 3897.4 3459.3 4571.3 5323.6 5985.2 TRUE FALSE 4451.777745 4209.240016 5335.101327 4457.709671 4929.022665 4588.549168 4115.684116 4182.939532 5834.955566 4765.412955 0.934185093 0.883289666 1.119546486 0.935429881 1.034332745 0.962885947 0.86365739 0.87777063 1.2244386 1 12.21838552 -8.753470023 24.99997986 1.112219321 0.954414523 0.343802922 0.088799322 179.6691015 563637.5399 0.062127413 0.022535107 1.76E-09 8.753470023 -0.157804798 AGLQFPVGR ddPTM_K562_Paclitaxel_30min_R1 1 AGLQFPVGR 9 0 P16104;A0A0U1RRH7;C9J0D1;A0A494C189;A0A0U1RR32;A0A3B3IS11;P20671;Q9BTM1-2;Q96QV6;Q6FI13;P04908;P0C0S8;Q71UI9-5;Q7L7L0;Q71UI9-2;Q93077;Q16777;Q9BTM1;Q99878;P0C0S5;Q71UI9;Q96KK5;Q8IUE6 P16104 H2AFX;H2AFV;HIST1H2AD;H2AFJ;HIST1H2AA;HIST2H2AA3;HIST1H2AB;HIST1H2AG;HIST3H2A;HIST1H2AC;HIST2H2AC;HIST1H2AJ;H2AFZ;HIST1H2AH;HIST2H2AB Histone H2AX;Histone H2A;Histone H2A type 1-D;Histone H2A.J;Histone H2A type 1-A;Histone H2A type 2-A;Histone H2A type 1-B/E;Histone H2A type 1;Histone H2A.V;Histone H2A type 3;Histone H2A type 1-C;Histone H2A type 2-C;Histone H2A type 1-J;Histone H2A.Z;Histone H2A type 1-H;Histone H2A type 2-B 0 116.9 0.024082 84629000 2328.4 2425.2 2846.7 2299 2230 2264.5 2586.2 2859.4 2211.6 3081 FALSE TRUE 2361.004784 2689.991537 2128.015377 2151.55243 2533.763754 2666.07728 3076.917949 2616.476122 2424.034062 2453.090509 0.962461342 1.096572478 0.867483434 0.877078291 1.032886371 1.086823854 1.254302659 1.066603989 0.988155167 1 11.26038475 -6.993403866 5.12934794 1.091548485 0.954589666 0.30826961 0.089527922 0.222664658 17.58240758 0.030634927 0.033370458 1.02E-07 6.993403866 -0.136958819 AGLS(ph)PANCQSDR ddPTM_K562_Paclitaxel_30min_R1 1 AGLSPANCQSDR 12 0 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 1 AGLS(0.999)PANCQS(0.001)DR 93.649 0.014805 22648000 1683.7 1274.1 1693.8 1605.8 1304.3 1418.8 1187.9 1736.2 1146.8 1931.2 TRUE FALSE 1707.276995 1413.210547 1266.179241 1502.811175 1481.967742 1670.404259 1413.297824 1588.698973 1256.955264 1537.62038 1.110337127 0.91908937 0.82346674 0.977361639 0.963805996 1.086356737 0.919146131 1.033219248 0.817467875 1 10.58648365 -5.25413231 23.87041176 0.950721803 1.110337271 0.266593375 0.080286973 658.0107253 2149457.087 0.01990757 0.194026517 5.57E-06 5.25413231 0.159615469 AGLS(ph)PANCQSDRVNLEK ddPTM_K562_Paclitaxel_30min_R1 1 AGLSPANCQSDRVNLEK 17 1 Q14692 Q14692 BMS1 Ribosome biogenesis protein BMS1 homolog 1 AGLS(0.982)PANCQS(0.018)DRVNLEK 112.67 0.0019714 17983000 1657.4 1018.2 2142.5 1513.7 1141.2 1032.1 1215.4 1637.3 1947 1953.1 TRUE FALSE 1680.608714 1129.370519 1601.599377 1416.618057 1296.650761 1215.128444 1446.015805 1498.201145 2134.018049 1555.057148 1.080737589 0.726256601 1.029929594 0.910974918 0.833828366 0.781404365 0.929879527 0.963437998 1.37230844 1 10.60275188 -8.589548885 7.468864833 1.184881166 0.894662378 0.431453545 0.129892414 0.200394852 18.87053838 0.083062362 0.030968601 2.57E-09 8.589548885 -0.290218789 AGMS(ph)SNQSISS(ph)PVLDAVPR ddPTM_K562_Paclitaxel_30min_R1 1 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 AGMS(0.858)S(0.139)NQS(0.16)IS(0.264)S(0.58)PVLDAVPR 93.029 0.0015209 0 522.1 443.68 696.08 699.47 499.17 468.77 433.78 693.53 384.35 664.75 TRUE FALSE 529.4110108 492.1224828 520.345995 654.6091249 567.165405 551.8997776 516.0874905 634.6102976 421.2685348 529.2735851 1.00025965 0.929807375 0.983132372 1.236806716 1.071592124 1.042749522 0.97508643 1.199021292 0.795937199 1 9.047869844 -11.19684281 15.68120329 0.999999939 1.03356982 0.000695977 0.1202161 0 0 0.113665218 0.027567865 6.36E-12 11.19684281 0.033569881 AGMSSNQS(ph)IS(ph)SPVLDAVPR ddPTM_K562_Paclitaxel_30min_R1 1 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 AGMS(0.001)S(0.021)NQS(0.672)IS(0.653)S(0.653)PVLDAVPR 109.84 0.002633 23253000 1243.5 1056.8 1403.7 1131.5 932.57 975.97 984.22 1235.5 1268 1381.3 TRUE FALSE 1260.912837 1172.184998 1049.318574 1058.930654 1059.601823 1149.044576 1170.970607 1130.536563 1389.797066 1099.790302 1.14650296 1.065825909 0.954107863 0.962847784 0.963458053 1.044785151 1.064721707 1.027956476 1.263692782 1 10.10301275 -8.583510264 24.99954753 1.136506905 1.024658187 0.203416172 0.081181786 104.3390095 43018.63985 0.054383261 0.020554942 2.61E-09 8.583510264 -0.111848718 AGMSSNQS(ph)ISSPVLDAVPR ddPTM_K562_Paclitaxel_30min_R1 1 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 AGMS(0.022)S(0.022)NQS(0.319)IS(0.319)S(0.319)PVLDAVPR 77.644 0.018452 13540000 923.99 1028.3 1564.9 1488.2 1062.6 1342.6 942.03 1393.7 795.42 1372 TRUE FALSE 936.9287108 1140.573271 1169.821641 1392.753513 1207.34411 1580.691259 1120.775275 1275.296486 871.823645 1092.385647 0.857690426 1.044112283 1.070887048 1.274965043 1.105236153 1.447008447 1.02598865 1.167441635 0.79809145 1 10.09326655 -8.751441022 24.99261872 0.899045709 1.131606243 0.251568505 0.154893644 244.813091 611963.0855 0.108958233 0.04010356 1.77E-09 8.751441022 0.232560534 AGMSSNQSIS(ph)SPVLDAVPR ddPTM_K562_Paclitaxel_30min_R1 3 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 AGMSS(0.003)NQS(0.14)IS(0.428)S(0.428)PVLDAVPR;AGMSSNQS(0.061)IS(0.648)S(0.291)PVLDAVPR;AGMSSNQS(0.061)IS(0.651)S(0.288)PVLDAVPR 174.87 1.22E-13 458310000 6379.7 6735.3 8085.5 7791.6 6791.4 6913.8 5905.8 6918.7 5233.6 7450.6 TRUE FALSE 6469.035483 7470.682831 6044.215525 7291.88165 7716.503659 8139.865355 7026.39472 6330.91325 5736.310664 5932.16363 1.090501862 1.259352118 1.018888875 1.229211145 1.300790764 1.372157928 1.184457334 1.067218244 0.966984564 1 12.53434268 -8.38277996 2.862504737 0.989265344 1.214253443 0.488381264 0.0946432 0.254385861 3.928301464 0.069484631 0.027872164 4.14E-09 8.38277996 0.2249881 AGMSSNQSIS(ph)SPVLDAVPRT(ph)PS(ph)RER ddPTM_K562_Paclitaxel_30min_R1 2 AGMSSNQSISSPVLDAVPRTPSRER 25 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 AGMS(0.005)S(0.023)NQS(0.136)IS(0.786)S(0.05)PVLDAVPRT(1)PS(1)RER;AGMSSNQS(0.001)IS(0.543)S(0.543)PVLDAVPRT(0.976)PS(0.937)RER 79.782 0.00022261 32664500 2977.74 2905.69 3920.2 3205.96 2805.08 3016.43 2557.63 3076.38 3102.71 3422.24 TRUE FALSE 3019.437547 3222.943061 2930.497026 3000.344075 3187.179386 3551.351508 3042.926941 2815.022317 3400.739159 2724.785609 1.108137659 1.182824458 1.075496368 1.101130329 1.169699141 1.303350801 1.116758298 1.033116994 1.248075866 1 11.41192701 -11.15685852 4.313991828 0.999966114 1.147004298 0.251822044 0.076857914 58411173.96 1.464426065 19661.47759 0.018921243 6.97E-12 11.15685852 0.147038184 AGMSSNQSIS(ph)SPVLDAVPRT(ph)PSR ddPTM_K562_Paclitaxel_30min_R1 3 AGMSSNQSISSPVLDAVPRTPSR 23 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 AGMSSNQSIS(0.567)S(0.432)PVLDAVPRT(0.966)PS(0.034)R;AGMSSNQSIS(0.566)S(0.434)PVLDAVPRT(0.93)PS(0.07)R;AGMSSNQSIS(0.553)S(0.447)PVLDAVPRT(0.644)PS(0.356)R 173.83 5.03E-20 393450000 4829 4546.7 4922.6 4408.1 4300.9 4188.6 4641.1 5909.9 3752.7 5951.9 TRUE FALSE 4896.620899 5043.124082 3679.828748 4125.384196 4886.755395 4931.389399 5521.724497 5407.817107 4113.163603 4738.899513 1.033282281 1.064197303 0.776515463 0.870536331 1.031200468 1.040619111 1.165191303 1.141154627 0.867957548 1 12.21033635 -6.90919208 6.330892184 1.056944774 0.934319189 0.183019625 0.106640471 0.346797959 19.94376837 0.035184288 0.040016046 1.23E-07 6.90919208 -0.122625585 AGMSSNQSISS(ph)PVLDAVPR ddPTM_K562_Paclitaxel_30min_R1 4 AGMSSNQSISSPVLDAVPR 19 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 AGMSSNQSIS(0.049)S(0.951)PVLDAVPR;AGMSSNQS(0.004)IS(0.087)S(0.909)PVLDAVPR;AGMSSNQS(0.002)IS(0.069)S(0.928)PVLDAVPR;AGMS(0.001)S(0.021)NQS(0.057)IS(0.095)S(0.827)PVLDAVPR 180.32 1.27E-15 2203264900 7366.7 6874.9 9526.4 8369.8 7293.3 6727.6 6597.5 7488.5 5799 7503.6 TRUE FALSE 7469.856528 7625.524831 7121.342499 7832.99849 8286.770937 7920.6454 7849.341184 6852.305183 6356.019861 5974.362201 1.250318658 1.276374712 1.191983723 1.311102043 1.38705533 1.325772548 1.313837514 1.14695175 1.063882578 1 12.54456899 -8.560020724 2.126848083 1.016774482 1.295080837 0.818940445 0.050119818 0.146360621 1.209821774 0.048969911 0.015641904 2.75E-09 8.560020724 0.278306355 AGMSSNQSISS(ph)PVLDAVPRT(ph)PS(ph)RER ddPTM_K562_Paclitaxel_30min_R1 1 AGMSSNQSISSPVLDAVPRTPSRER 25 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 AGMS(0.006)S(0.033)NQS(0.26)IS(0.329)S(0.371)PVLDAVPRT(1)PS(1)RER 81.967 0.00018452 19889000 1706.2 1636.1 2208.6 2384.8 1632.7 1372 1474.5 2044.7 1416.2 2054.4 TRUE FALSE 1730.092064 1814.734931 1651.011614 2231.849602 1855.101382 1615.304936 1754.278678 1870.989972 1552.232338 1635.712152 1.057699585 1.109446383 1.009353395 1.364451318 1.134124595 0.987523956 1.07248618 1.143838156 0.948964239 1 10.67570317 -7.194150681 9.558871941 1.042221433 1.13952198 0.209692485 0.099936963 0.931024871 127.9316674 0.033876944 0.033875481 6.40E-08 7.194150681 0.097300546 AGMSSNQSISS(ph)PVLDAVPRT(ph)PSR ddPTM_K562_Paclitaxel_30min_R1 1 AGMSSNQSISSPVLDAVPRTPSR 23 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 AGMSSNQSIS(0.248)S(0.751)PVLDAVPRT(0.876)PS(0.124)R 120.52 4.28E-06 178590000 1157.6 953.27 1257.8 1118.8 1024 1015.9 1285.7 1437.3 705.85 1618.1 TRUE FALSE 1173.809972 1057.351242 940.2528337 1047.045176 1163.486136 1196.055601 1529.654863 1315.192394 773.6500463 1288.330332 0.911109474 0.82071439 0.729822787 0.812714837 0.90309613 0.928376497 1.187315726 1.020850291 0.600505963 1 10.33128684 -6.965880246 2.701258528 0.962341351 0.812399496 0.148973084 0.14289228 0.504198366 7.472237855 0.050727651 0.056411383 1.08E-07 6.965880246 -0.149941855 AGMSSNQSISS(ph)PVLDAVPRT(ph)PSRER ddPTM_K562_Paclitaxel_30min_R1 2 AGMSSNQSISSPVLDAVPRTPSRER 25 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 AGMSS(0.001)NQS(0.006)IS(0.04)S(0.952)PVLDAVPRT(0.896)PS(0.104)RER;AGMS(0.002)S(0.006)NQS(0.013)IS(0.175)S(0.59)PVLDAVPRT(0.872)PS(0.34)RER 95.654 8.19E-05 374460000 4583.3 4675.8 5208.7 4037.4 4147.8 3932.2 4262.6 5225.8 5099.3 5326.5 TRUE FALSE 4647.480341 5186.319657 3893.699265 3778.459235 4712.800583 4629.520459 5071.406098 4781.835672 5589.110549 4240.956376 1.095856672 1.222912758 0.918118207 0.890945084 1.111258915 1.091621806 1.195816615 1.127537104 1.317889187 1 12.05017393 -7.413226109 2.149756605 1.169705848 1.039263341 0.173058752 0.114825875 0.552637515 5.038048764 0.049926887 0.041489211 3.86E-08 7.413226109 -0.130442507 AGMSSNQSISSPVLDAVPRT(ph)PS(ph)RER ddPTM_K562_Paclitaxel_30min_R1 1 AGMSSNQSISSPVLDAVPRTPSRER 25 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 AGMSSNQSISSPVLDAVPRT(1)PS(1)RER 87.509 0.00023074 225460000 3200.4 2988.2 3916 3461.2 2984.5 3094.2 3030.4 4060.3 3753 3786 TRUE FALSE 3245.215474 3314.461781 2927.357368 3239.214124 3391.039428 3642.912925 3605.40258 3715.352171 4113.492419 3014.411122 1.076566979 1.099538732 0.971120809 1.074576092 1.124942581 1.208499033 1.19605536 1.23253001 1.364608958 1 11.55766048 -7.03996439 2.01084215 1.217215954 1.050895427 0.365218239 0.089030116 0.324258283 2.621923662 0.032112845 0.034279484 9.12E-08 7.03996439 -0.166320527 AGMSSNQSISSPVLDAVPRT(ph)PSR ddPTM_K562_Paclitaxel_30min_R1 2 AGMSSNQSISSPVLDAVPRTPSR 23 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 AGMSSNQSISSPVLDAVPRT(0.859)PS(0.141)R;AGMSSNQSISSPVLDAVPRT(0.805)PS(0.195)R 181.95 1.75E-22 120033000 1265.45 1305.37 1199.43 1130.63 1090.84 1155.55 1179.6 1586.84 984.94 1878.6 TRUE FALSE 1283.170204 1447.894711 896.6190621 1058.116452 1239.430876 1360.470568 1403.422942 1452.028037 1079.547888 1495.740289 0.857883025 0.968012109 0.599448359 0.707419905 0.82864043 0.909563363 0.938279829 0.970775507 0.721748218 1 10.54664398 -7.120327591 3.904929972 0.907823307 0.781928616 0.214443379 0.112958048 0.406390438 10.80740118 0.040128748 0.040520424 7.58E-08 7.120327591 -0.125894691 AGMSSNQSISSPVLDAVPRT(ph)PSRER ddPTM_K562_Paclitaxel_30min_R1 1 AGMSSNQSISSPVLDAVPRTPSRER 25 2 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 AGMS(0.003)S(0.003)NQS(0.02)IS(0.017)S(0.02)PVLDAVPRT(0.91)PS(0.028)RER 59.814 0.0044122 13572000 1194.2 1264.9 1516.7 1073.7 1045.2 1196.6 1128.2 1416.8 1522.7 1446.6 TRUE FALSE 1210.922484 1403.00606 1133.790327 1004.837688 1187.573935 1408.800209 1342.27006 1296.433997 1668.962139 1151.782126 1.051346828 1.218117583 0.984379164 0.872419935 1.031075156 1.223148178 1.165385389 1.125589612 1.449025906 1 10.16965212 -7.255932217 23.63906053 1.198776394 1.030385132 0.27351124 0.131131621 298.5371802 1281448.49 0.044536915 0.043270002 5.55E-08 7.255932217 -0.168391262 AGNWPGS(ph)PQVSGPSPAAR ddPTM_K562_Paclitaxel_30min_R1 2 AGNWPGSPQVSGPSPAAR 18 0 H7C3E5;O60244 H7C3E5 MED14 Mediator of RNA polymerase II transcription subunit 14 1 AGNWPGS(0.824)PQVS(0.081)GPS(0.095)PAAR;AGNWPGS(1)PQVSGPSPAAR 182.47 2.71E-82 10123000 2515.8 2127.28 3045.2 2448.39 2345.23 2375.73 1843.81 2512.7 2422.4 2633.9 TRUE FALSE 2551.028962 2359.543624 2276.401597 2291.361224 2664.690031 2797.032359 2193.663322 2299.230451 2655.082344 2097.109734 1.216449917 1.125140752 1.085494746 1.092628195 1.27064883 1.333755842 1.046041266 1.096380611 1.266067436 1 11.03418664 -11.82214416 6.979925281 0.990472291 1.166115089 0.235074198 0.09187724 0.014807393 0.000377307 0.096699216 0.022699276 1.51E-12 11.82214416 0.175642798 AGPAS(ph)LAR ddPTM_K562_Paclitaxel_30min_R1 1 AGPASLAR 8 0 M0R1L2 M0R1L2 PGLS 1 AGPAS(1)LAR 90.986 0.015663 13797000 0 0 0 0 0 0 0 0 50.64 0 TRUE FALSE 0 0 0 0 0 0 0 0 55.50419827 0 0 AGPCSLSQGNLS(ph)PNWPR ddPTM_K562_Paclitaxel_30min_R1 2 AGPCSLSQGNLSPNWPR 17 0 O43182-4;O43182 O43182-4 ARHGAP6 Rho GTPase-activating protein 6 1 AGPCS(0.009)LS(0.34)QGNLS(0.651)PNWPR;AGPCS(0.043)LS(0.169)QGNLS(0.788)PNWPR 263.04 1.64E-94 232950000 1575.61 1773.87 1908.52 1504.82 1372.62 1360.19 1264.92 2072.63 1476.12 1842.83 TRUE FALSE 1597.673401 1967.547125 1426.690522 1408.307581 1559.594083 1601.400598 1504.931967 1896.547145 1617.907921 1467.260234 1.088882097 1.340966707 0.972350022 0.959821269 1.062929429 1.09142234 1.025674881 1.292577213 1.10267278 1 10.51890906 -11.49679278 15.69670607 0.999999996 1.104636238 0.066027548 0.117492948 5.66E-09 1.68E-10 0.118111256 0.028646187 3.19E-12 11.49679278 0.104636242 AGPDLPSLPSHALEDEGWAAAAPS(ph)PGS(ph)AR ddPTM_K562_Paclitaxel_30min_R1 1 AGPDLPSLPSHALEDEGWAAAAPSPGSAR 29 0 Q9H3Q1-2;Q9H3Q1 Q9H3Q1-2 CDC42EP4 Cdc42 effector protein 4 2 AGPDLPSLPSHALEDEGWAAAAPS(1)PGS(1)AR 63.372 0.0026967 5746600 772.22 747.8 1077.3 858.91 670.46 830.18 863.07 757.36 775.53 964.81 TRUE FALSE 783.0334625 829.4473329 805.3222911 803.8233569 761.788003 977.4007667 1026.833027 693.0175407 850.0231217 768.1811924 1.019334332 1.079754804 1.048349399 1.046398122 0.991677498 1.272357064 1.336706804 0.902153746 1.106539876 1 9.585302832 AGPDLPSLPSHALEDEGWAAAAPS(ph)PGSAR ddPTM_K562_Paclitaxel_30min_R1 3 AGPDLPSLPSHALEDEGWAAAAPSPGSAR 29 0 Q9H3Q1-2;Q9H3Q1 Q9H3Q1-2 CDC42EP4 Cdc42 effector protein 4 1 AGPDLPSLPSHALEDEGWAAAAPS(0.914)PGS(0.086)AR;AGPDLPSLPSHALEDEGWAAAAPS(0.849)PGS(0.151)AR;AGPDLPSLPSHALEDEGWAAAAPS(0.851)PGS(0.149)AR 228.96 2.75E-74 155117000 6708.7 6824.7 8156.4 7011.1 5365.5 5822.6 5377.2 7948.2 7096.3 8439.5 TRUE FALSE 6802.642498 7569.843826 6097.215943 6561.439427 6096.371939 6855.156357 6397.495629 7272.950799 7777.931322 6719.525267 1.012369509 1.126544439 0.907387903 0.976473659 0.907262298 1.020184624 0.952075537 1.082360808 1.157512028 1 12.7141436 -8.30870954 8.337425595 1.090444397 0.986365304 0.27498374 0.069265349 0.460173528 75.49733341 0.038263824 0.018382966 4.91E-09 8.30870954 -0.104079093 AGPDLPSLPSHALEDEGWAAAAPSPGS(ph)AR ddPTM_K562_Paclitaxel_30min_R1 1 AGPDLPSLPSHALEDEGWAAAAPSPGSAR 29 0 Q9H3Q1-2;Q9H3Q1 Q9H3Q1-2 CDC42EP4 Cdc42 effector protein 4 1 AGPDLPSLPSHALEDEGWAAAAPS(0.141)PGS(0.859)AR 156.86 3.37E-35 118930000 1521.2 1392.6 2117 1560.9 1134.9 1091.7 1129.9 1397.8 1347.4 2183.2 TRUE FALSE 1542.501493 1544.648777 1582.537167 1460.79086 1289.492594 1285.297667 1344.292627 1279.048165 1476.82379 1738.262642 0.887381145 0.88861645 0.91041315 0.840374075 0.7418284 0.739415113 0.773354149 0.735819855 0.849597613 1 10.76343037 -6.509606134 4.896098165 0.788266347 0.892939508 0.194749631 0.075184807 0.233822643 15.57505978 0.020780667 0.029313089 3.09E-07 6.509606134 0.104673161 AGPEEPGDS(ph)PPLR ddPTM_K562_Paclitaxel_30min_R1 1 AGPEEPGDSPPLR 13 0 A0A0A0MTG6;Q12770-4;Q12770-2;Q12770 A0A0A0MTG6 SCAP Sterol regulatory element-binding protein cleavage-activating protein 1 AGPEEPGDS(1)PPLR 132.31 0.00031406 29779000 1892.1 1258.5 2058.7 1687.4 1466.3 1121.4 1345 1551.4 978.65 1824.2 TRUE FALSE 1918.595238 1395.907286 1538.955723 1579.177717 1666.034885 1320.264545 1600.206729 1419.598886 1072.653705 1452.427039 1.320958084 0.961085995 1.059575237 1.087268189 1.147069588 0.90900576 1.101746722 0.977397727 0.738525018 1 10.50424998 -8.530619292 6.892231475 0.864179967 1.071869857 0.341342474 0.119187658 0.149023723 38.28353027 0.073060712 0.029053466 2.95E-09 8.530619292 0.20768989 AGPTEPMDTSEATVCHS(ph)DLERTPPLLPGRPAR ddPTM_K562_Paclitaxel_30min_R1 1 AGPTEPMDTSEATVCHSDLERTPPLLPGRPAR 32 2 B5MEB3;A0A087WWW8;Q9Y6J0-2;Q9Y6J0 B5MEB3 CABIN1 Calcineurin-binding protein cabin-1 1 AGPTEPMDTS(0.001)EAT(0.002)VCHS(0.498)DLERT(0.498)PPLLPGRPAR 59.555 0.00044531 84137000 997.02 826.58 1434.7 1098.6 991.1 993.3 893.42 1248 1123.9 1255.7 TRUE FALSE 1010.981356 916.8287997 1072.492241 1028.140713 1126.104599 1169.447808 1062.941781 1141.97461 1231.855617 999.7876507 1.011196083 0.917023529 1.072720032 1.028359084 1.126343778 1.169696193 1.063167544 1.142217159 1.232117256 1 9.965477897 -6.314199931 1.240648591 1.129679601 0.967441231 0.417734515 0.067289946 0.441426436 1.316398087 0.02311868 0.055870389 4.85E-07 6.314199931 -0.162238371 AGQDMGLEHGFEKPLDS(ph)AMSAEEDTDVRGR ddPTM_K562_Paclitaxel_30min_R1 1 AGQDMGLEHGFEKPLDSAMSAEEDTDVRGR 30 2 A0A0A0MT47;Q99549;Q99549-2 A0A0A0MT47 MPHOSPH8 M-phase phosphoprotein 8 1 AGQDMGLEHGFEKPLDS(0.498)AMS(0.498)AEEDT(0.003)DVRGR 40.414 0.025493 7402700 507.28 506.7 575.12 350.35 339.12 257.81 365.05 340.35 626.63 456.91 TRUE FALSE 514.3834851 562.0232195 429.923843 327.8801191 385.3138853 303.5289837 434.3163318 311.4351431 686.8206114 363.7914912 1.413951391 1.544904796 1.181786417 0.901285838 1.059161346 0.834348771 1.193860611 0.856081439 1.88795128 1 8.50696799 -5.869198171 4.820559926 1.086262081 1.477012281 0.206569788 0.28695645 0.285547083 10.75243689 0.073006953 0.161287367 1.35E-06 5.869198171 0.3907502 AGS(ph)FFWNLR ddPTM_K562_Paclitaxel_30min_R1 1 AGSFFWNLR 9 0 C9JPI6;Q9NYY8-2;Q9NYY8 C9JPI6 FASTKD2 FAST kinase domain-containing protein 2 1 AGS(1)FFWNLR 91.584 0.015921 9490400 1086.3 1023.5 1100.6 1048.1 924.84 876.26 819.63 1135.1 893.37 1295 TRUE FALSE 1101.511552 1135.249191 822.739918 980.8795571 1050.818866 1031.652408 975.1505137 1038.66617 979.1821802 1031.078289 1.068310295 1.101031031 0.797941268 0.951314335 1.019145565 1.000556814 0.945757974 1.00735917 0.94966812 1 10.00993816 AGS(ph)ISTLDSLDFAR ddPTM_K562_Paclitaxel_30min_R1 1 AGSISTLDSLDFAR 14 0 A0A075B785;A0A2R8Y566;Q9P260;Q9P260-2 A0A075B785 KIAA1468 LisH domain and HEAT repeat-containing protein KIAA1468 1 AGS(0.996)IS(0.003)T(0.001)LDSLDFAR 108.66 0.0036435 9029200 557.39 504.13 595.78 650.94 568.08 442.05 311.41 443.78 456.62 526.63 TRUE FALSE 565.1951797 559.1726183 445.3679705 609.1916219 645.4621137 520.4413608 370.4984218 406.078119 500.4803912 419.3025169 1.3479413 1.333578015 1.062163838 1.452868984 1.53937095 1.241207338 0.883606482 0.968460962 1.193602163 1 8.71184768 -7.593128996 5.950761327 1.011516351 1.341619955 0.580773376 0.134769538 0.159382302 10.06240744 0.055131279 0.042529286 2.55E-08 7.593128996 0.330103604 AGS(ph)PDVLR ddPTM_K562_Paclitaxel_30min_R1 2 AGSPDVLR 8 0 Q8NDX6 Q8NDX6 ZNF740 Zinc finger protein 740 1 AGS(1)PDVLR;AGS(1)PDVLR 93.111 0.015472 36840000 8903.6 7717.1 12426.9 10058.8 7748.7 7295.5 6883.4 8979.7 8340.6 9909.2 TRUE FALSE 9028.27787 8559.679076 9289.575401 9413.67359 8804.204127 8589.254491 8189.489216 8216.818435 9141.751897 7889.699601 1.144311992 1.084918249 1.177430811 1.193159951 1.115911197 1.08866686 1.037997596 1.041461507 1.158694546 1 12.94575466 -7.234987327 2.705773856 1.063881626 1.147291732 0.425705407 0.046581082 0.293530877 4.274196443 0.017454582 0.016476951 5.82E-08 7.234987327 0.083410106 AGS(ph)PLCNSNLQDSEEDIEPSYSLFR ddPTM_K562_Paclitaxel_30min_R1 1 AGSPLCNSNLQDSEEDIEPSYSLFR 25 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 AGS(0.982)PLCNS(0.018)NLQDSEEDIEPSYSLFR 83.22 0.00012253 5591900 506.06 274.57 647 603.67 333.07 299.03 320.26 531.95 401.48 514.59 TRUE FALSE 513.1464013 304.5484811 483.656848 564.9533081 378.4397729 352.0587719 381.0276631 486.7575272 440.0439479 409.7162755 1.252443293 0.743315556 1.180467745 1.378889104 0.923663021 0.859274559 0.92997932 1.188035614 1.074021156 1 8.678481393 AGS(ph)SAS(ph)PPAPYSPPS(ph)S(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 AGSSASPPAPYSPPSSR 17 0 F8W883;Q9Y6X6 F8W883 MYO16 Unconventional myosin-XVI 4 AGS(0.823)S(0.464)AS(0.704)PPAPY(0.013)S(0.103)PPS(0.959)S(0.933)R 71.263 0.014948 5680200 659.62 649.92 1197.7 1039.1 817.64 826.49 636.35 1004.4 932.84 846.97 TRUE FALSE 668.8567151 720.8804635 895.325822 972.4567768 929.0164108 973.056397 757.0940905 919.0699507 1022.44345 674.3570491 0.991843588 1.068989291 1.32767326 1.442050288 1.377632831 1.442939461 1.12269026 1.362883286 1.516175224 1 9.397368841 -5.717590883 3.929307218 1.341644778 1.010787768 0.387790478 0.147589567 0.195274571 6.207048934 0.037208408 0.104798403 1.92E-06 5.717590883 -0.33085701 AGS(ph)SPAQGAQNEPPR ddPTM_K562_Paclitaxel_30min_R1 1 AGSSPAQGAQNEPPR 15 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 AGS(0.824)S(0.176)PAQGAQNEPPR 98.676 0.004981 0 339.62 297.07 515.98 369.3 439.74 394.76 465.91 382.46 341.26 428.93 TRUE FALSE 344.3757278 329.5051072 385.7144674 345.6147509 499.6400329 464.7651433 554.3139903 349.9676358 374.0395478 341.5138306 1.008380033 0.964836788 1.129425613 1.012008065 1.463015515 1.360896988 1.623108468 1.024753918 1.095239824 1 8.415800195 -6.736090792 24.98216905 1.285490193 1.031300849 0.263955292 0.187567153 303.2935793 298908.1141 0.057739602 0.074512581 1.84E-07 6.736090792 -0.254189343 AGSNEDPILAPS(ph)GTPPPTIPPDETFGGRVPR ddPTM_K562_Paclitaxel_30min_R1 2 AGSNEDPILAPSGTPPPTIPPDETFGGRVPR 31 1 E7EV54;C9JFV4;Q8IZL8 E7EV54 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 1 AGSNEDPILAPS(0.658)GT(0.341)PPPT(0.001)IPPDETFGGRVPR;AGS(0.006)NEDPILAPS(0.496)GT(0.496)PPPT(0.002)IPPDETFGGRVPR 102.39 4.04E-12 109000000 1499.9 1418.66 1808.81 1534.13 1098.09 1337.51 1435.3 1411.34 1916.07 1684.19 TRUE FALSE 1520.903228 1573.554096 1352.153544 1435.737768 1247.668449 1574.698619 1707.640682 1291.437858 2100.117085 1340.951154 1.134197337 1.17346116 1.008354063 1.070686106 0.930435419 1.174314676 1.273454799 0.963075988 1.566139885 1 10.38904097 -7.49768427 24.0153468 1.201346979 1.065432662 0.138785284 0.165377033 915.9398715 873074.734 0.055347188 0.048579152 3.18E-08 7.49768427 -0.135914318 AGSNEDPILAPSGT(ph)PPPTIPPDETFGGR ddPTM_K562_Paclitaxel_30min_R1 4 AGSNEDPILAPSGTPPPTIPPDETFGGR 28 0 E7EV54;C9JFV4;Q8IZL8 E7EV54 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 1 AGSNEDPILAPS(0.05)GT(0.95)PPPTIPPDETFGGR;AGSNEDPILAPS(0.066)GT(0.934)PPPTIPPDETFGGR;AGSNEDPILAPS(0.038)GT(0.962)PPPTIPPDETFGGR;AGSNEDPILAPS(0.397)GT(0.603)PPPTIPPDETFGGR 146.33 2.01E-25 95336000 8964.1 8830.5 11063.4 9516.7 8655.6 7552 8910 10758.2 7198.1 11142 TRUE FALSE 9089.625057 9794.643853 8270.30784 8906.341457 9834.639261 8891.241165 10600.62599 9844.223759 7889.509667 8871.254284 1.024615547 1.104087826 0.932259134 1.003955154 1.108596253 1.002252994 1.194941059 1.109676653 0.889334181 1 13.11492238 AGSNEDPILAPSGT(ph)PPPTIPPDETFGGRVPR ddPTM_K562_Paclitaxel_30min_R1 1 AGSNEDPILAPSGTPPPTIPPDETFGGRVPR 31 1 E7EV54;C9JFV4;Q8IZL8 E7EV54 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 1 AGSNEDPILAPS(0.124)GT(0.875)PPPT(0.001)IPPDETFGGRVPR 83.332 1.75E-06 19941000 520.9 489.68 583.67 481.11 512.81 370.07 422.6 608.49 602.11 590.66 TRUE FALSE 528.1942071 543.1449184 436.3152898 450.253758 582.6634039 435.6967185 502.7861439 556.7949764 659.9453558 470.2831678 1.123140787 1.154931657 0.927771436 0.957409894 1.238962914 0.926456119 1.069113628 1.183956847 1.403293592 1 8.877385886 -8.305684454 4.289124304 1.226209151 1.053243429 0.182991738 0.131900066 0.31430452 12.87309254 0.073694609 0.034534088 4.95E-09 8.305684454 -0.172965722 AGSNEDPILAPSGTPPPT(ph)IPPDETFGGRVPR ddPTM_K562_Paclitaxel_30min_R1 2 AGSNEDPILAPSGTPPPTIPPDETFGGRVPR 31 1 E7EV54;C9JFV4;Q8IZL8 E7EV54 PELP1 "Proline-, glutamic acid- and leucine-rich protein 1" 1 AGSNEDPILAPS(0.024)GT(0.185)PPPT(0.79)IPPDET(0.002)FGGRVPR;AGSNEDPILAPS(0.067)GT(0.19)PPPT(0.741)IPPDET(0.002)FGGRVPR 101.75 3.76E-11 122581000 1421.54 1364.81 1583.32 1143.67 973.75 1154.34 1234.73 1102.06 1664.72 1464.48 TRUE FALSE 1441.445946 1513.824571 1183.591284 1070.320125 1106.391236 1359.045991 1469.013572 1008.433124 1824.623794 1166.018172 1.236212248 1.298285573 1.015071044 0.917927482 0.948862773 1.165544435 1.259854783 0.864851979 1.564833068 1 10.18737456 -10.34813506 14.77201512 1 1.126021419 0.037345128 0.202250783 0 0 0.192109131 0.046593308 4.49E-11 10.34813506 0.126021419 AGSSPCLGSSSAAS(ph)SPPPPASR ddPTM_K562_Paclitaxel_30min_R1 1 AGSSPCLGSSSAASSPPPPASR 22 0 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2 A0A0A0MS59 SRCAP Helicase SRCAP 1 AGSSPCLGSSSAAS(0.5)S(0.5)PPPPASR 370.35 0 22327000 1917.3 1658.4 2350.2 1656.8 1481.6 1417.3 1541 1569.5 1396.6 1902.4 TRUE FALSE 1944.148115 1839.46972 1756.862943 1550.540264 1683.419004 1668.638255 1833.396705 1436.161178 1530.74967 1514.689836 1.283528858 1.214420059 1.159882969 1.023668494 1.111395194 1.101636926 1.210410648 0.948155289 1.010602721 1 10.56480669 -2 0.271216486 1.011979791 2.961170945 0.590838266 0.066829122 39.66020025 0.554600977 0.082683339 36.24732191 0.01 2 1.949191154 AGSSPCLGSSSAASS(ph)PPPPASR ddPTM_K562_Paclitaxel_30min_R1 1 AGSSPCLGSSSAASSPPPPASR 22 0 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2 A0A0A0MS59 SRCAP Helicase SRCAP 1 AGSSPCLGSS(0.001)S(0.001)AAS(0.012)S(0.986)PPPPASR 146.28 1.12E-17 27186000 1455.3 1357.2 2498.1 1634.3 1433.5 1431.2 1221.3 1552.4 1010.3 1479.4 TRUE FALSE 1475.67869 1505.383686 1867.423759 1529.483313 1628.766969 1685.003225 1453.035299 1420.51393 1107.343829 1177.897468 1.252807422 1.278026082 1.585387362 1.29848595 1.382774829 1.430517741 1.233583855 1.205974178 0.940102054 1 10.20199825 -8.443609923 1.577639616 0.966362073 1.371066907 0.70740899 0.097579681 0.217658661 0.957047414 0.084918837 0.029037374 3.60E-09 8.443609923 0.404704834 AGT(ph)EDEEEEEEGRR ddPTM_K562_Paclitaxel_30min_R1 1 AGTEDEEEEEEGRR 14 1 F8WBH7;O95456-2;O95456 F8WBH7 PSMG1 Proteasome assembly chaperone 1 1 AGT(1)EDEEEEEEGRR 90.725 0.016607 4735100 922.73 763.04 1093.8 1226.7 988.83 1007.7 624.88 806.55 1064.9 1064.5 TRUE FALSE 935.6510669 846.3512876 817.6566621 1148.024953 1123.525387 1186.401446 743.4477179 738.0285432 1167.188403 847.5543157 1.103942307 0.998580589 0.964724793 1.354514904 1.325608715 1.399794 0.877168229 0.870774332 1.377125196 1 9.727162016 -14.09662019 0.41097777 3.42E-08 1.138021097 0.039850615 0.19979304 1667.846781 24.00687647 1464.533777 0.130951055 8.01E-15 14.09662019 1.138021063 AGTDS(ph)PVSCASVTEER ddPTM_K562_Paclitaxel_30min_R1 2 AGTDSPVSCASVTEER 16 0 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 1 AGT(0.001)DS(0.981)PVS(0.017)CAS(0.001)VTEER;AGT(0.001)DS(0.997)PVS(0.002)CASVTEER 241.66 6.04E-51 64852000 3128.5 3012.5 4445.5 3414.9 2594.6 2309.1 2699.6 3261.1 2584.9 3826.8 TRUE FALSE 3172.308652 3341.414938 3323.178544 3195.883599 2948.028447 2718.586464 3211.835007 2984.0492 2833.191195 3046.896059 1.041160772 1.096661938 1.090676701 1.048898136 0.967551367 0.892247852 1.054133434 0.979373481 0.929861452 1 11.57312457 -6.664792893 3.866508587 0.969610203 1.077014802 0.574920992 0.042040599 0.165499071 4.673560058 0.013088166 0.01702929 2.16E-07 6.664792893 0.107404599 AGTEDEEEEEEGRRETPEDR ddPTM_K562_Paclitaxel_30min_R1 1 AGTEDEEEEEEGRRETPEDR 20 2 F8WBH7;O95456-2;O95456 F8WBH7 PSMG1 Proteasome assembly chaperone 1 0 54.103 0.028635 21508000 1333.6 1011.1 1597.6 1201.3 1471.5 1108.8 954.9 1588 1221.7 1377.9 FALSE TRUE 1352.274515 1121.495317 1194.266121 1124.253995 1671.943213 1305.430112 1136.08729 1453.089488 1339.049744 1097.083224 1.232608872 1.022251816 1.088582977 1.024766372 1.523989408 1.18990983 1.035552514 1.324502514 1.220554389 1 10.09945726 AGTFIAPPVYSNITPYQSHLRS(ph)PVR ddPTM_K562_Paclitaxel_30min_R1 1 AGTFIAPPVYSNITPYQSHLRSPVR 25 1 A0A0A0MSU2;A0A1C7CYX1;Q6PJG2 A0A0A0MSU2 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 AGTFIAPPVY(0.004)S(0.019)NIT(0.004)PY(0.176)QS(0.216)HLRS(0.582)PVR 72.771 0.0002857 41286000 2759.6 2447.5 2574.9 2201.8 2201.4 1494.4 3199.3 3459.7 2019 4505.2 TRUE FALSE 2798.242914 2714.726327 1924.834649 2060.586403 2501.26795 1759.410858 3806.350474 3165.77689 2212.933971 3587.037767 0.780098537 0.756815652 0.536608415 0.574453501 0.697307392 0.490491311 1.061140339 0.882560234 0.616925194 1 11.80857722 -7.756851467 24.99948857 0.88036979 0.63965953 0.441864941 0.137946319 117.6526829 641092.5039 0.05490275 0.041079314 1.75E-08 7.756851467 -0.240710261 AGTPIRDS(ph)HSPDLQLPTPEVIPSSGSK ddPTM_K562_Paclitaxel_30min_R1 1 AGTPIRDSHSPDLQLPTPEVIPSSGSK 27 1 H3BPE1;H3BQK9;H0Y6T5;H0Y4F5 H3BPE1 MACF1 1 AGT(0.251)PIRDS(0.595)HS(0.154)PDLQLPTPEVIPSSGSK 51.715 0.011716 28517000 1510.9 1401.9 2876.9 1706.9 1074 1051.8 1152.7 1478 1468.5 1719.5 TRUE FALSE 1532.057262 1554.964183 2150.591014 1597.427074 1220.296983 1238.321962 1371.418808 1352.434675 1609.555986 1369.064956 1.119053741 1.135785542 1.570846587 1.166801521 0.891336074 0.904501979 1.001719313 0.987852818 1.175660789 1 10.41897518 -6.55370288 7.485359632 0.99159214 1.278940012 0.472968132 0.135293093 0.168585132 32.03529985 0.041373206 0.05401585 2.79E-07 6.55370288 0.287347872 AGTPIRDSHS(ph)PDLQLPTPEVIPSSGSK ddPTM_K562_Paclitaxel_30min_R1 1 AGTPIRDSHSPDLQLPTPEVIPSSGSK 27 1 H3BPE1;H3BQK9;H0Y6T5;H0Y4F5 H3BPE1 MACF1 1 AGT(0.377)PIRDS(0.172)HS(0.434)PDLQLPT(0.017)PEVIPSSGSK 56.292 0.0034947 23173000 1989.1 1775.9 3255.5 2293.6 1633.7 1444.6 1341.8 1742.7 1730.8 2324.9 TRUE FALSE 2016.953537 1969.798768 2433.608761 2146.498762 1856.237599 1700.779527 1596.399545 1594.646757 1897.051073 1851.084104 1.089606643 1.064132507 1.314693782 1.159590079 1.002784041 0.918801865 0.862413297 0.861466399 1.024832459 1 10.85415473 -6.89982694 3.16863781 0.922473668 1.162349614 0.64032485 0.078901019 0.158627503 3.182359407 0.027147371 0.031261164 1.26E-07 6.89982694 0.239875946 AGVLAHLEEER ddPTM_K562_Paclitaxel_30min_R1 1 AGVLAHLEEER 11 0 P35579-2;P35579;P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35579-2;P35580 MYH9;MYH10 Myosin-9;Myosin-10 0 133.91 0.001692 5463800 2718.5 2498.6 2883.6 2526 2620.7 2262.1 2456.3 3038.4 1805.5 2632.9 FALSE TRUE 2756.567387 2771.405598 2155.599516 2363.993666 2977.683709 2663.251674 2922.370102 2780.268955 1978.926342 2096.313535 1.314959495 1.322037735 1.028281066 1.127690885 1.420438145 1.270445298 1.394052013 1.326265804 0.944003036 1 11.03363879 -11.0971095 6.924676948 0.999999863 1.245109746 0.186238705 0.1491362 3.22E-07 4.22E-08 0.14746784 0.035766184 8.00E-12 11.0971095 0.245109884 AGVNSDS(ph)PNNCSGK ddPTM_K562_Paclitaxel_30min_R1 3 AGVNSDSPNNCSGK 14 0 F8WE62;Q9Y4C1 F8WE62 KDM3A Lysine-specific demethylase 3A 1 AGVNS(0.01)DS(0.99)PNNCSGK;AGVNS(0.001)DS(0.997)PNNCS(0.002)GK;AGVNSDS(1)PNNCSGK 254.72 1.07E-72 10483300 6912.17 5634.7 12657.8 8089.1 5937.62 5126.03 4720.95 7542.5 7251.9 9549.7 TRUE FALSE 7008.961706 6249.915601 9462.18184 7570.301331 6746.424369 6035.059447 5616.725617 6901.717546 7948.477397 7603.465898 0.921811421 0.82198246 1.244456405 0.99563823 0.887282781 0.7937248 0.738705966 0.90770678 1.045375557 1 12.89244148 -6.76705655 6.240169598 0.877446536 1.001793556 0.116946232 0.129633021 0.295569277 45.73931421 0.041871998 0.050398054 1.71E-07 6.76705655 0.12434702 AGVVNGTGAPGQS(ph)PGAGR ddPTM_K562_Paclitaxel_30min_R1 2 AGVVNGTGAPGQSPGAGR 18 0 H0Y4T7;E7ESY4;Q13330-3;Q13330;Q13330-2 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 AGVVNGTGAPGQS(1)PGAGR;AGVVNGTGAPGQS(1)PGAGR 183.21 3.00E-12 38138000 3460.8 3348.2 3684.9 3402.5 3202.7 3140.3 2837.8 3831.1 3083.2 4464.7 TRUE FALSE 3509.261877 3713.767799 2754.601421 3184.278879 3638.961962 3697.188113 3376.257736 3505.624142 3379.355136 3554.791689 0.987191989 1.044721639 0.774898127 0.89577088 1.023677976 1.0400576 0.949776536 0.986168656 0.950647867 1 11.79554931 -6.759024668 24.99910193 0.991349435 0.923383404 0.177340857 0.069648444 122.7767097 1271074.357 0.0224529 0.027623594 1.74E-07 6.759024668 -0.067966032 AGYLNLRNKTGLVT(ph)T(ph)T(ph)WER ddPTM_K562_Paclitaxel_30min_R1 1 AGYLNLRNKTGLVTTTWER 19 2 Q8NEU8-2;Q8NEU8;Q8NEU8-3 Q8NEU8-2 APPL2 DCC-interacting protein 13-beta 3 AGYLNLRNKTGLVT(1)T(1)T(1)WER 48.883 0.022809 9080200 1930.9 1810.3 2081.8 2011.9 1588.8 1858.7 1563.9 1782.7 1670.7 2290.1 TRUE FALSE 1957.938557 2007.954676 1556.223843 1882.865739 1805.221459 2188.314348 1860.641861 1631.248508 1831.1782 1823.376363 1.073798365 1.101228861 0.853484708 1.032625944 0.990043249 1.20014408 1.020437634 0.89463072 1.004278786 1 10.83239666 -8.019699405 24.81542982 0.961179671 1.039664162 0.13022139 0.086992549 1482.863081 1867961.282 0.041773253 0.024558161 9.56E-09 8.019699405 0.078484491 AGYST(ph)DESSSSSLHATR ddPTM_K562_Paclitaxel_30min_R1 2 AGYSTDESSSSSLHATR 17 0 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 1 AGYS(0.006)T(0.993)DESSSSSLHATR;AGY(0.018)S(0.279)T(0.698)DES(0.001)S(0.002)S(0.001)SSLHATR 119.65 0.0005131 19297200 3514.9 3316.5 3992.6 3726.6 3064.5 2658.2 3167.5 3585.7 3523.8 4326.7 TRUE FALSE 3564.119444 3678.606686 2984.61875 3487.592556 3481.936782 3129.594447 3768.51659 3281.072404 3862.276735 3444.916165 1.034602665 1.067836345 0.866383566 1.012388223 1.010746449 0.908467521 1.093935646 0.95243897 1.121152606 1 11.75025316 -8.750965942 24.99991993 1.060576328 0.993338534 0.125534336 0.070972373 377.9252599 902115.5218 0.047215988 0.017432684 1.77E-09 8.750965942 -0.067237794 AHAS(ph)PFSGALTPSAPPGPEMNR ddPTM_K562_Paclitaxel_30min_R1 2 AHASPFSGALTPSAPPGPEMNR 22 0 F1T0I1;O15027-2;O15027-4;O15027-3;O15027;O15027-5 F1T0I1 SEC16A Protein transport protein Sec16A 1 AHAS(0.737)PFS(0.263)GALTPSAPPGPEMNR;AHAS(0.924)PFS(0.076)GALTPSAPPGPEMNR 103.4 0.00014468 47642000 1538.67 1720.51 2103.1 1852.12 1380.53 1744.13 1316.67 2026.3 1610.58 1837.93 TRUE FALSE 1560.216127 1908.3611 1572.146394 1733.333313 1568.581559 2053.426967 1566.501259 1854.153167 1765.283405 1463.358857 1.066188324 1.304096457 1.074340984 1.184489577 1.07190492 1.403228577 1.070483328 1.267052957 1.206322972 1 10.51506789 -5.022993036 17.0514497 1.181987385 1.01924597 0.069077625 0.118722948 5248920.339 259849247.6 0.027249934 10321200.94 9.48E-06 5.022993036 -0.162741415 AHASLMS(ph)PGRR ddPTM_K562_Paclitaxel_30min_R1 1 AHASLMSPGRR 11 1 Q14207 Q14207 NPAT Protein NPAT 1 AHASLMS(1)PGRR 72.891 0.030659 4631000 1823 1571.2 2747.5 2372 1679.6 1751.7 1731.3 2178.9 2271.1 2575.7 TRUE FALSE 1848.527624 1742.748929 2053.859644 2219.870537 1908.389956 2062.3394 2059.805137 1993.788845 2489.249303 2050.770926 0.901381817 0.849801851 1.001506125 1.082456606 0.930571977 1.005641037 1.004405275 0.972214312 1.213811485 1 11.00195063 -3.715955374 0.37551456 1.048714852 0.322497535 0.333864046 0.077557455 21.99557403 0.98374609 0.0625375 9.139284734 0.000192329 3.715955374 -0.726217318 AHAT(ph)PACQMGHLVLQELMR ddPTM_K562_Paclitaxel_30min_R1 1 AHATPACQMGHLVLQELMR 19 0 A0A1B0GTN9 A0A1B0GTN9 1 AHAT(1)PACQMGHLVLQELMR 51.888 0.030875 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 AHEVGAQGGPPVAQVEQDLPIS(ph)RENLTDLVVDTDTLGESTQPQR ddPTM_K562_Paclitaxel_30min_R1 1 AHEVGAQGGPPVAQVEQDLPISRENLTDLVVDTDTLGESTQPQR 44 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 AHEVGAQGGPPVAQVEQDLPIS(0.475)RENLT(0.475)DLVVDT(0.047)DT(0.004)LGESTQPQR 121.61 3.32E-33 30314000 582.79 533.15 659.6 619.21 365.07 239.53 486.25 585.69 445.17 780.75 TRUE FALSE 590.9508581 591.36112 493.0758222 579.4966421 414.7987147 282.0072823 578.5133991 535.9319787 487.9305676 621.6327214 0.950643101 0.951303076 0.793194768 0.932217083 0.667272974 0.453655788 0.930635372 0.86213605 0.784917767 1 9.279918636 -5.870311707 1.43468189 0.779480531 0.968734587 0.120837566 0.148612399 1.028381578 3.71398331 0.048161183 0.204487831 1.35E-06 5.870311707 0.189254056 AHFNAMFQPS(ph)SPTR ddPTM_K562_Paclitaxel_30min_R1 1 AHFNAMFQPSSPTR 14 0 H0Y4Q6;Q8WUA4 H0Y4Q6 GTF3C2 General transcription factor 3C polypeptide 2 1 AHFNAMFQPS(0.745)S(0.255)PTR 189.99 1.04E-06 23222000 1379.7 1277.5 1437.5 1533.3 1241.1 1220 1285.2 1582.7 896.49 1834.9 TRUE FALSE 1399.020057 1416.98177 1074.585346 1434.961001 1410.158832 1436.34987 1529.059991 1448.239756 982.6018701 1460.946373 0.957612191 0.969906765 0.735540583 0.982213329 0.965236547 0.983163994 1.046622942 0.991302476 0.672579013 1 10.51268751 AHFNAMFQPS(ph)SPTRR ddPTM_K562_Paclitaxel_30min_R1 2 AHFNAMFQPSSPTRR 15 1 H0Y4Q6;Q8WUA4 H0Y4Q6 GTF3C2 General transcription factor 3C polypeptide 2 1 AHFNAMFQPS(0.802)S(0.197)PTRR;AHFNAMFQPS(0.494)S(0.494)PT(0.011)RR 168.08 1.14E-05 68375000 2041.4 1796.67 2257.4 2575.7 2093.6 2025.15 1770.39 1786.83 2193.7 1951.84 TRUE FALSE 2069.985898 1992.836507 1687.491451 2410.50613 2378.783765 2384.281918 2106.31226 1635.027638 2404.414687 1554.053937 1.331991026 1.282347066 1.085864146 1.55110841 1.530695756 1.534233698 1.355366253 1.052104821 1.547188698 1 10.60182086 -11.92029681 2.658211838 0.779625552 1.358953523 0.27822678 0.175475596 37999911.3 23608785.58 52206043.4 0.046898794 1.20E-12 11.92029681 0.579327971 AHFNAMFQPSS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 1 AHFNAMFQPSSPTR 14 0 H0Y4Q6;Q8WUA4 H0Y4Q6 GTF3C2 General transcription factor 3C polypeptide 2 1 AHFNAMFQPS(0.032)S(0.949)PT(0.019)R 172.09 4.28E-06 21733000 976.36 1130 1303 1197.2 1139.3 1124 1036.4 1453.4 875.54 1621.1 TRUE FALSE 990.0320523 1253.377221 974.0415347 1120.41695 1294.491949 1323.325618 1233.05149 1329.924598 959.639529 1290.71893 0.767039228 0.971069062 0.754650383 0.868056495 1.002923191 1.025262423 0.955321458 1.030375062 0.743492256 1 10.33395916 -6.639486661 5.68030227 0.963705666 0.83990575 0.279544434 0.09463836 0.277889816 12.73437149 0.027275689 0.035333018 2.29E-07 6.639486661 -0.123799916 AHGLSLIPSTGLCS(ph)PDLVNR ddPTM_K562_Paclitaxel_30min_R1 2 AHGLSLIPSTGLCSPDLVNR 20 0 O75030-11;O75030-10;O75030-9;O75030-12;O75030-4;O75030-3;O75030-8;O75030-7;O75030-6;O75030-2;O75030-5;O75030 O75030-11 MITF Microphthalmia-associated transcription factor 1 AHGLSLIPST(0.001)GLCS(0.999)PDLVNR;AHGLSLIPS(0.003)T(0.02)GLCS(0.978)PDLVNR 239.8 7.72E-58 40158000 1740.07 1668.22 2517.3 1815.82 1582.17 1798.97 2100.61 2089.96 2282.4 2416.15 TRUE FALSE 1764.436349 1850.361901 1881.776481 1699.361433 1797.68834 2117.992071 2499.189782 1912.404853 2501.634718 1923.737304 0.917191939 0.961857889 0.978187863 0.883364599 0.934477039 1.100977803 1.299132567 0.994109148 1.300403497 1 10.90969609 -7.333093375 4.218613436 1.153359288 0.935556298 0.51704262 0.099008163 0.174250394 6.009804879 0.033408163 0.029569192 4.64E-08 7.333093375 -0.21780299 AHHS(ph)SQEMSSEYR ddPTM_K562_Paclitaxel_30min_R1 1 AHHSSQEMSSEYR 13 0 I3L3V9;I3L1L9;I3L1R7;Q99447-2;Q99447-4;Q99447;Q99447-3 I3L3V9 PCYT2 Ethanolamine-phosphate cytidylyltransferase 1 AHHS(0.912)S(0.088)QEMSSEYR 106.42 0.00042659 0 606.86 543.26 624.28 812.55 551.79 544.36 494.49 601.63 351.48 701.89 TRUE FALSE 615.3579123 602.574964 466.672793 760.4366798 626.9531399 640.8946028 588.3168961 550.5177762 385.2412245 558.8444327 1.101125602 1.078251708 0.835067446 1.360730528 1.12187418 1.146821128 1.052738225 0.985100225 0.689353247 1 9.126302921 -8.444595555 3.131011175 0.842409751 1.101548445 0.34149444 0.139571573 0.282876218 5.26368073 0.096144758 0.037428158 3.59E-09 8.444595555 0.259138694 AHHSS(ph)QEMSSEYR ddPTM_K562_Paclitaxel_30min_R1 1 AHHSSQEMSSEYR 13 0 I3L3V9;I3L1L9;I3L1R7;Q99447-2;Q99447-4;Q99447;Q99447-3 I3L3V9 PCYT2 Ethanolamine-phosphate cytidylyltransferase 1 AHHS(0.024)S(0.974)QEMS(0.002)S(0.001)EYR 135.72 1.40E-15 0 599.3 425.25 1050.3 606.64 621.57 470.45 599.69 676.55 392.16 740.98 TRUE FALSE 607.692049 471.6802331 785.1387751 567.7328256 706.2383573 553.8777021 713.4780469 619.0728546 429.8287202 589.9678693 1.030042619 0.799501562 1.330816161 0.962311433 1.197079356 0.938826894 1.209350685 1.04933317 0.728562931 1 9.204492575 -8.64952354 8.591731646 0.865688712 1.067369068 0.208926892 0.156204779 0.356840823 25.075947 0.100575286 0.037670357 2.24E-09 8.64952354 0.201680356 AHLDHIPDYTPPLLTTIS(ph)PEQESDER ddPTM_K562_Paclitaxel_30min_R1 4 AHLDHIPDYTPPLLTTISPEQESDER 26 0 K7EM61;F5H0Q6;A0A0A0MQS2;Q8N2M8-3;Q8N2M8 K7EM61 CLASRP CLK4-associating serine/arginine rich protein 1 AHLDHIPDYTPPLLT(0.001)T(0.002)IS(0.679)PEQES(0.319)DER;AHLDHIPDYTPPLLTTIS(0.981)PEQES(0.019)DER;AHLDHIPDYTPPLLTTIS(0.973)PEQES(0.027)DER;AHLDHIPDYTPPLLT(0.003)T(0.009)IS(0.969)PEQES(0.019)DER 144.08 2.48E-20 120810000 5723.5 4957.75 7356.7 6077.6 5905.7 5939.37 6039.77 7206.1 5052.1 7310.5 TRUE FALSE 5803.646659 5499.053911 5499.410098 5687.809938 6710.156324 6992.633877 7185.784828 6593.896826 5537.376778 5820.616087 0.997084599 0.944754615 0.944815809 0.977183489 1.152825787 1.201356312 1.234540248 1.132852043 0.951338603 1 12.50695615 -6.728717198 7.119412299 1.129407202 0.961990741 0.423897423 0.082009732 0.172867186 27.39240046 0.02543571 0.032350024 1.87E-07 6.728717198 -0.167416462 AHLTVGQAAAGGS(ph)GNLLTER ddPTM_K562_Paclitaxel_30min_R1 1 AHLTVGQAAAGGSGNLLTER 20 0 Q99959-2;Q99959 Q99959-2 PKP2 Plakophilin-2 1 AHLTVGQAAAGGS(0.995)GNLLT(0.005)ER 120.54 1.58E-05 9070300 789.47 927.82 1006 837.08 762.53 764 660.63 658.01 607.21 856.94 TRUE FALSE 800.5250157 1029.122525 752.0228579 783.3934354 866.3994957 899.4846729 785.9810938 602.1079433 665.5352336 682.2951576 1.17328257 1.508324533 1.102195801 1.148173817 1.269830932 1.318321936 1.151966396 0.882474303 0.975435962 1 9.414252167 -8.085129784 4.134255405 0.949347936 1.25341587 0.603072358 0.108827109 0.158457591 4.90523648 0.05446094 0.030765794 8.22E-09 8.085129784 0.304067934 AHPLTQPS(ph)SPPNQCANVMAGDDQIR ddPTM_K562_Paclitaxel_30min_R1 4 AHPLTQPSSPPNQCANVMAGDDQIR 25 0 Q8NFU7 Q8NFU7 TET1 Methylcytosine dioxygenase TET1 1 AHPLT(0.003)QPS(0.59)S(0.408)PPNQCANVMAGDDQIR;AHPLT(0.005)QPS(0.581)S(0.414)PPNQCANVMAGDDQIR;AHPLT(0.008)QPS(0.496)S(0.496)PPNQCANVMAGDDQIR;AHPLTQPS(0.61)S(0.39)PPNQCANVMAGDDQIR 150.83 8.68E-26 74792000 2556.33 2329.33 2652.82 2809.56 2599.97 2055.87 2403.52 2554.96 2334.18 2595.56 TRUE FALSE 2592.126507 2583.654127 1983.082781 2629.367397 2954.129932 2420.449679 2859.575373 2337.9002 2558.388418 2066.583447 1.254305269 1.250205565 0.959594825 1.27232578 1.42947527 1.171232491 1.383721222 1.131287587 1.23797973 1 11.0130319 -9.716117805 1.187998832 0.999765725 1.235085789 0.241489015 0.12350165 6.95928477 10.1432708 0.126125327 0.036948028 1.92E-10 9.716117805 0.235320064 AHQITDES(ph)LESTRR ddPTM_K562_Paclitaxel_30min_R1 2 AHQITDESLESTRR 14 1 H3BM38;O00161;H3BNG6;H3BU94;H3BNE1;H3BR18;H3BPJ0;O00161-2 H3BM38 SNAP23 Synaptosomal-associated protein;Synaptosomal-associated protein 23 1 AHQIT(0.003)DES(0.788)LES(0.129)T(0.08)RR;AHQITDES(0.994)LES(0.003)T(0.003)RR 114.58 0.0014884 66379000 4596.49 4237.61 4668.59 3862.14 4052.66 3935.94 4509.41 5156.2 5549.4 5703.8 TRUE FALSE 4660.855041 4700.28659 3489.946714 3614.439627 4604.700904 4633.923696 5365.047007 4718.148626 6082.444665 4541.362429 1.026312063 1.03499482 0.768480113 0.795893233 1.013947021 1.020381828 1.181373892 1.038928009 1.339343591 1 12.14890946 -7.376132398 1.899426017 1.142993921 0.910215282 0.413919141 0.119223171 0.344214038 2.452934159 0.052184836 0.04407853 4.21E-08 7.376132398 -0.232778639 AHQITDESLESTRR ddPTM_K562_Paclitaxel_30min_R1 1 AHQITDESLESTRR 14 1 H3BM38;O00161;H3BNG6;H3BU94;H3BNE1;H3BR18;H3BPJ0;O00161-2 H3BM38 SNAP23 Synaptosomal-associated protein;Synaptosomal-associated protein 23 0 79.492 0.014861 11318000 979.29 1387.8 2238.6 1158.6 1120.7 953.62 952.67 1662.8 1312.4 1603.8 FALSE TRUE 993.0030814 1539.324697 1673.437743 1084.292582 1273.358314 1122.731118 1133.434159 1521.534761 1438.461884 1276.94468 0.77763986 1.205474851 1.310501363 0.849130427 0.997191448 0.879232386 0.887614144 1.191543209 1.126487237 1 10.31848031 -11.19970133 9.686197692 0.999999999 1.029268606 0.001386108 0.168907549 2.02E-09 2.60E-10 0.168893225 0.040962623 6.31E-12 11.19970133 0.029268606 AHS(ph)PAEGASVESSSPGPK ddPTM_K562_Paclitaxel_30min_R1 4 AHSPAEGASVESSSPGPK 18 0 C9J4C4;Q8NFG4-3;Q8NFG4-2;Q8NFG4 C9J4C4 FLCN Folliculin 1 AHS(0.985)PAEGAS(0.015)VESSSPGPK;AHS(0.997)PAEGAS(0.003)VESSSPGPK;AHS(1)PAEGASVESSSPGPK;AHS(1)PAEGASVESSSPGPK 230.45 1.48E-213 23436900 7285.7 5915.13 13207 8310 6417.74 5877.96 5341.79 8502.6 6455.01 10130 TRUE FALSE 7387.722278 6560.963897 9872.729508 7777.033794 7291.944841 6920.333675 6355.366766 7780.251058 7075.042552 8065.50044 0.915965765 0.813460237 1.224069056 0.964234501 0.904090812 0.858016651 0.787969304 0.964633393 0.87719821 1 12.97754834 -6.750942776 4.60279172 0.888485759 0.986389512 0.112093502 0.110022315 0.405385832 21.24066214 0.034786377 0.042982591 1.77E-07 6.750942776 0.097903752 AHS(ph)PALGVHSFSGVQR ddPTM_K562_Paclitaxel_30min_R1 2 AHSPALGVHSFSGVQR 16 0 Q9H1A4 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 AHS(1)PALGVHSFSGVQR;AHS(1)PALGVHSFSGVQR 131.37 4.06E-07 71097000 2080.96 1989.64 2655.2 2172.76 2182.64 2006.6 1757.08 2358.4 2394.4 2723.9 TRUE FALSE 2110.09986 2206.875624 1984.861921 2033.408899 2479.95252 2362.442336 2090.476757 2158.039199 2624.392818 2168.767685 0.972948774 1.017571241 0.915202645 0.937587236 1.143484633 1.089301705 0.963900731 0.995053188 1.210084804 1 11.08265981 -6.73936478 24.99522318 1.062686563 0.961621657 0.33598243 0.072949651 308.6740734 349512.3811 0.022097451 0.028504344 1.82E-07 6.73936478 -0.101064906 AHSEKDQPPFGDSDDS(ph)VEADKSSPGIHLER ddPTM_K562_Paclitaxel_30min_R1 1 AHSEKDQPPFGDSDDSVEADKSSPGIHLER 30 2 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 AHS(0.001)EKDQPPFGDS(0.019)DDS(0.642)VEADKS(0.169)S(0.169)PGIHLER 55.986 0.0011697 12281000 1421.3 1040.7 3522.2 1758.8 1291.4 982.53 915.16 1650.4 1643.9 2457.9 TRUE FALSE 1441.202585 1154.327145 2632.977048 1645.99844 1467.310544 1156.7679 1088.806833 1510.188219 1801.80394 1956.978631 0.736442679 0.589851686 1.345429637 0.841091678 0.749783631 0.591098892 0.556371345 0.771693771 0.920707008 1 10.93441229 AHSEPLALCGETAPRDS(ph)PPASEAPASEPGYVNYTK ddPTM_K562_Paclitaxel_30min_R1 2 AHSEPLALCGETAPRDSPPASEAPASEPGYVNYTK 35 1 K7ELE9;Q66K64 K7ELE9 DCAF15 DDB1- and CUL4-associated factor 15 1 AHSEPLALCGETAPRDS(0.785)PPAS(0.215)EAPASEPGYVNYTK;AHSEPLALCGET(0.024)APRDS(0.756)PPAS(0.218)EAPAS(0.002)EPGYVNYTK 89.366 1.91E-10 84182000 4420.7 3108.6 6427 4509.8 3331.2 3279.9 3011.2 4950.8 3656.5 5068.5 TRUE FALSE 4482.603439 3448.007461 4804.424362 4220.561613 3784.965838 3861.544213 3582.55948 4530.198638 4007.723163 4035.536918 1.110782414 0.854411081 1.190529156 1.045848842 0.937908862 0.956884868 0.88775287 1.122576433 0.993107793 1 11.97854492 -4.952664835 20.52398263 1.002169218 2.127942881 0.10729375 0.096475759 247.5076522 299315.2666 0.023137976 45080.61761 1.12E-05 4.952664835 1.125773662 AHSLMELSPSAPPGGS(ph)PHLDSSR ddPTM_K562_Paclitaxel_30min_R1 4 AHSLMELSPSAPPGGSPHLDSSR 23 0 E9PNJ4;Q13586;G0XQ39;H0YDB2 E9PNJ4 STIM1 Stromal interaction molecule 1 1 AHSLMELSPSAPPGGS(0.903)PHLDS(0.058)S(0.039)R;AHSLMELSPSAPPGGS(0.951)PHLDS(0.024)S(0.024)R;AHS(0.009)LMELS(0.023)PS(0.019)APPGGS(0.928)PHLDS(0.012)S(0.009)R;AHSLMELSPSAPPGGS(0.894)PHLDS(0.063)S(0.043)R 142.3 3.11E-17 126934000 3899.29 3372.88 4142.48 3542.68 3309.63 3265.47 3371.79 4447.83 3013.56 3931.15 TRUE FALSE 3953.89209 3741.142445 3096.65969 3315.468361 3760.457638 3844.555255 4011.569551 4069.959079 3303.025903 3129.979472 1.263232595 1.195261016 0.989354633 1.059262015 1.201432045 1.228300469 1.281660019 1.300314943 1.055286762 1 11.61193748 -6.79978267 23.91685405 1.200563028 1.12185332 0.023796482 0.112017131 256.3310221 159886.0041 0.035552 0.040313278 1.59E-07 6.79978267 -0.078709708 AHT(ph)GPVFT(ph)MY(ph)TTLR ddPTM_K562_Paclitaxel_30min_R1 1 AHTGPVFTMYTTLR 14 0 Q6ZMW3-2;Q6ZMW3 Q6ZMW3-2 EML6 Echinoderm microtubule-associated protein-like 6 3 AHT(1)GPVFT(0.926)MY(0.913)T(0.128)T(0.033)LR 47.774 0.029784 31534000 2060.1 2465.2 2833.5 2425.1 1849.4 2153 2252.5 2691.2 1652.8 2908.5 TRUE FALSE 2088.947756 2734.358873 2118.147881 2269.56494 2101.319591 2534.80432 2679.900116 2462.565762 1811.558825 2315.746103 0.902062516 1.18076799 0.914671897 0.980057761 0.907404999 1.094595093 1.157251269 1.063400585 0.782278689 1 11.17726137 -8.740633642 24.99993745 0.891139204 1.027846192 0.199302142 0.107224708 324.965191 390477.1205 0.072431232 0.027311732 1.82E-09 8.740633642 0.136706987 AHT(ph)LLSPPSANNATFAR ddPTM_K562_Paclitaxel_30min_R1 1 AHTLLSPPSANNATFAR 17 0 C9IZD2;C9J8Z7;C9JLE1;C9JHC7;F8W8R3;A0A087WWF6;P49005 C9IZD2 POLD2 DNA polymerase delta subunit 2 1 AHT(0.722)LLS(0.275)PPS(0.001)ANNAT(0.001)FAR 94.673 0.01005 7713200 1081.2 756.18 1130.7 920.58 725.32 677.84 832.86 796.04 934.64 1212.6 TRUE FALSE 1096.340136 838.7422896 845.2408007 861.5381192 824.1208638 798.0454067 990.8908372 728.4114333 1024.416348 965.4714544 1.135548991 0.868738569 0.875469489 0.892349655 0.853594231 0.826586227 1.026328466 0.754461906 1.061052964 1 9.915089794 -10.95298743 23.13295695 1 0.911174119 0.035350665 0.111591893 0 0 0.100804674 0.024448725 1.11E-11 10.95298743 -0.088825881 AHT(ph)PLNTPDPSTK ddPTM_K562_Paclitaxel_30min_R1 1 AHTPLNTPDPSTK 13 0 Q9BYW2;H7C3H4;A0A1W2PPX9 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 AHT(0.999)PLNT(0.001)PDPSTK 143.58 0.00012152 10354000 2619.8 2392.7 5532 3325.1 2533 2270.7 1919.1 3092.5 1815.3 3970.5 TRUE FALSE 2656.485283 2653.943078 4135.378181 3111.842969 2878.037484 2673.376763 2283.239207 2829.772822 1989.667676 3161.309921 0.840311564 0.839507402 1.308121723 0.984352388 0.910393968 0.845654754 0.722244659 0.89512667 0.629380771 1 11.62630676 -7.083999614 2.362686628 0.803689348 1.002473916 0.224563715 0.152205764 0.43998141 4.846312899 0.056338455 0.058303496 8.24E-08 7.083999614 0.198784568 AHT(ph)PTPGIYMGRPTHSGGGGGGGGGGGGGGGGR ddPTM_K562_Paclitaxel_30min_R1 6 AHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR 33 1 Q13595;Q13595-4;Q13595-3 Q13595 TRA2A Transformer-2 protein homolog alpha 1 AHT(0.499)PT(0.499)PGIY(0.002)MGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.79)PT(0.21)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.742)PT(0.234)PGIY(0.023)MGRPT(0.001)HSGGGGGGGGGGGGGGGGR;AHT(0.496)PT(0.496)PGIY(0.004)MGRPT(0.003)HSGGGGGGGGGGGGGGGGR;AHT(0.968)PT(0.032)PGIYMGRPTHSGGGGGGGGGGGGGGGGR;AHT(0.916)PT(0.084)PGIY(0.001)MGRPTHSGGGGGGGGGGGGGGGGR 79.784 7.88E-06 179413000 5521.55 4796.47 7728.02 6452.62 5332.25 4952.65 4519.86 5599.82 5769.78 6171.92 TRUE FALSE 5598.868735 5320.164815 5776.985772 6038.777834 6058.592726 5830.932939 5377.47984 5124.080338 6323.993149 4914.079316 1.139352537 1.082637148 1.175598805 1.228872683 1.232904952 1.186576887 1.094300579 1.042734561 1.286913121 1 12.26270543 -7.759308371 24.97149517 1.109548274 1.175356487 0.147688418 0.08021883 120.7179264 1414613.919 0.03200505 0.023569761 1.74E-08 7.759308371 0.065808213 AHTPLNT(ph)PDPS(ph)T(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 AHTPLNTPDPSTK 13 0 Q9BYW2;H7C3H4;A0A1W2PPX9 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 3 AHT(0.15)PLNT(0.85)PDPS(1)T(1)K 82.663 0.017578 40522000 2685.9 2060.4 3679.6 2931.2 2297.3 1976.6 1923 2896.1 2071.6 2987.8 TRUE FALSE 2723.510887 2285.36144 2750.639471 2743.205952 2610.231154 2327.122257 2287.879211 2650.058228 2270.586436 2378.88472 1.144868797 0.960686081 1.156272706 1.153147914 1.097249956 0.97824087 0.961744465 1.113991866 0.954475186 1 11.21606965 -7.248349637 22.87813137 1.006318347 1.100376861 0.361966158 0.06671458 313.4213597 547793.7289 0.022292218 0.022125805 5.64E-08 7.248349637 0.094058514 AHTPTPGIY(ph)MGRPTHSGGGGGGGGGGGGGGGGR ddPTM_K562_Paclitaxel_30min_R1 1 AHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR 33 1 Q13595;Q13595-4;Q13595-3 Q13595 TRA2A Transformer-2 protein homolog alpha 1 AHT(0.028)PT(0.095)PGIY(0.876)MGRPT(0.001)HSGGGGGGGGGGGGGGGGR 72.028 0.00022904 52042000 957.08 758.84 1386.8 955.93 718.33 762.99 910.41 766.03 808.59 1013.2 TRUE FALSE 970.4820728 841.6927174 1036.685188 894.6209284 816.1787074 898.2955636 1083.155545 700.9509701 886.2586824 806.7092838 1.203013393 1.043365602 1.285079035 1.10897562 1.011738335 1.113530712 1.342683872 0.868901578 1.098609747 1 9.655905049 -8.278675951 24.99975641 0.987816769 1.149532668 0.33482628 0.108767875 1043.195262 1513031.676 0.058213098 0.028073952 5.26E-09 8.278675951 0.161715898 AIAMSLGQDIPMDQRAES(ph)PEEVACR ddPTM_K562_Paclitaxel_30min_R1 2 AIAMSLGQDIPMDQRAESPEEVACR 25 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 AIAMSLGQDIPMDQRAES(1)PEEVACR;AIAMSLGQDIPMDQRAES(1)PEEVACR 107.25 1.59E-06 50895000 1741.2 1972.81 2177.22 2013.86 1469.44 1680.95 1739.54 2174.31 1904.57 1911.43 TRUE FALSE 1765.582172 2188.208067 1627.553883 1884.700033 1669.602606 1979.042881 2069.608634 1989.588794 2087.512458 1521.879517 1.160132686 1.437832656 1.069436749 1.238402917 1.097066218 1.300393927 1.359903075 1.307323459 1.37166736 1 10.57163843 AIEALHGHELRPGR ddPTM_K562_Paclitaxel_30min_R1 1 AIEALHGHELRPGR 14 1 Q96PK6;A0A0A6YYI9;F8WDX3;A0A0A0MSL8;B8ZZ74;Q96PK6-3;Q96PK6-4;Q96PK6-2;Q96PK6-5 Q96PK6 RBM14;RBM14-RBM4 RNA-binding protein 14 0 86.288 0.02164 8170000 1575.8 1531.7 1744.3 1753.9 1516 1459.4 1595.2 2002.7 1846 2155.9 FALSE TRUE 1597.866062 1698.936186 1303.929892 1641.412704 1722.504866 1718.204099 1897.880872 1832.558135 2023.316548 1716.526397 0.930871826 0.989752438 0.759632881 0.956240875 1.003482888 1.000977382 1.105652017 1.067596827 1.178727314 1 10.74527633 -7.176459525 1.282054972 1.093147344 0.902539495 0.544240432 0.071528126 0.333558444 1.121877803 0.033528712 0.032529695 6.66E-08 7.176459525 -0.190607849 AIEPPPLDAVIEAEHTLR ddPTM_K562_Paclitaxel_30min_R1 2 AIEPPPLDAVIEAEHTLR 18 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 ; 216.77 6.97E-25 9558500 5480.8 5786.9 6887.2 6812.4 5777.7 5476.6 6805.9 7072.8 5173.5 7877.2 FALSE TRUE 5557.54811 6418.733312 5148.44118 6375.483155 6564.720557 6447.798115 8097.283996 6471.921493 5670.437791 6271.822316 0.886113769 1.023423973 0.820884413 1.016528025 1.04670066 1.028058161 1.291057621 1.031904472 0.904113271 1 12.61466897 -6.478368104 6.937287359 1.060276233 0.920406531 0.268323226 0.102478524 0.324800127 41.30697033 0.030061203 0.044029849 3.32E-07 6.478368104 -0.139869702 AIGS(ph)DTSDIVHIWCPEGMK ddPTM_K562_Paclitaxel_30min_R1 1 AIGSDTSDIVHIWCPEGMK 19 0 Q09GN1;Q71F23-3;Q71F23 Q09GN1 MLF1IP;CENPU Centromere protein U 1 AIGS(0.513)DT(0.392)S(0.095)DIVHIWCPEGMK 112.14 0.00022946 13167000 4396.6 4045.1 7801.1 4973.7 4070.9 3644.7 4161.2 6239.9 4933.1 7839.7 TRUE FALSE 4458.165965 4486.757698 5831.615822 4654.709143 4625.425501 4291.036371 4950.765977 5709.781547 5406.946297 6241.964837 0.71422478 0.718805347 0.93425964 0.74571217 0.741020756 0.687449623 0.793142241 0.914741062 0.866225049 1 12.60778451 -8.524670631 1.364775804 0.967763776 0.760656673 0.542953778 0.070039544 0.356802207 1.187122508 0.066709303 0.022314953 2.99E-09 8.524670631 -0.207107102 AIGSDTS(ph)DIVHIWCPEGMK ddPTM_K562_Paclitaxel_30min_R1 1 AIGSDTSDIVHIWCPEGMK 19 0 Q09GN1;Q71F23-3;Q71F23 Q09GN1 MLF1IP;CENPU Centromere protein U 1 AIGS(0.226)DT(0.177)S(0.597)DIVHIWCPEGMK 123.83 2.58E-06 12711000 3206.7 2964.7 4828.6 3181.6 2538.6 2477.3 2512.4 3952.3 3502.3 5346.5 TRUE FALSE 3251.603694 3288.395972 3609.560211 2977.546416 2884.400299 2916.614372 2989.114784 3616.527446 3838.711564 4256.880365 0.763846623 0.772489638 0.847935554 0.699466783 0.677585474 0.685153004 0.702184353 0.849572254 0.901766372 1 12.05558083 -8.713517748 1.802744496 0.987711318 0.736291803 0.745907518 0.051412152 0.18682932 1.150261183 0.053771674 0.016104239 1.93E-09 8.713517748 -0.251419515 AIGSVPERS(ph)PAGVDLSLTGLPPPVSR ddPTM_K562_Paclitaxel_30min_R1 1 AIGSVPERSPAGVDLSLTGLPPPVSR 26 1 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 AIGS(0.001)VPERS(0.999)PAGVDLSLTGLPPPVSR 133.41 1.74E-14 10691000 733.93 841.95 1179.5 776.07 878.89 572 1016.8 972.05 687.64 919.72 TRUE FALSE 744.2072844 933.8769483 881.7206371 726.2963438 998.6096977 673.4361687 1209.732492 889.4682852 753.6908945 732.2805592 1.016287098 1.275299387 1.204074895 0.991827975 1.363698224 0.919642288 1.652006839 1.214655058 1.029237886 1 9.516252685 AIPELDAYEAEGLALDDEDVEELT(ph)ASQREAAER ddPTM_K562_Paclitaxel_30min_R1 1 AIPELDAYEAEGLALDDEDVEELTASQREAAER 33 1 P49736;F8WDM3;C9JZ21;H7C4N9 P49736 MCM2 DNA replication licensing factor MCM2 1 AIPELDAY(0.015)EAEGLALDDEDVEELT(0.803)AS(0.181)QREAAER 55.158 0.002674 20586000 1421.6 960.34 1192.8 1084.9 833.69 1315 810.15 1088.2 1148.6 1184.8 TRUE FALSE 1441.506786 1065.193169 891.6628876 1015.31937 947.2526925 1548.196786 963.8717332 995.7506177 1258.928162 943.3371096 1.528092949 1.129175517 0.945221892 1.076305977 1.004150778 1.641191437 1.021768065 1.0555618 1.33454748 1 9.881629612 -10.01425414 0.014233652 1.64E-06 2.237993443 0.044104566 0.225007462 8681.842973 37.25799372 3080.241444 2776.294687 9.68E-11 10.01425414 2.237991798 AIPELDAYEAEGLALDDEDVEELTAS(ph)QR ddPTM_K562_Paclitaxel_30min_R1 3 AIPELDAYEAEGLALDDEDVEELTASQR 28 0 P49736;F8WDM3;C9JZ21;C9J013;H7C4N9 P49736 MCM2 DNA replication licensing factor MCM2 1 AIPELDAYEAEGLALDDEDVEELT(0.093)AS(0.907)QR;AIPELDAYEAEGLALDDEDVEELT(0.109)AS(0.891)QR;AIPELDAYEAEGLALDDEDVEELT(0.335)AS(0.665)QR 185.77 1.47E-41 34677000 2434.922 2597.99 3628.62 3220.81 2131.19 2672.644 2592.78 3268.85 1546.7 3291.02 TRUE FALSE 2469.01842 2881.647334 2712.530003 3014.241662 2421.494159 3146.599888 3084.74647 2991.140789 1695.267446 2620.308318 0.942262559 1.099735979 1.035194975 1.150338547 0.924125662 1.200851009 1.177245612 1.141522457 0.646972509 1 11.35552086 -8.744056323 24.99836914 0.823486147 1.086710768 0.435253871 0.118623113 181.4455633 260936.9941 0.076955566 0.028937181 1.80E-09 8.744056323 0.26322462 AIPGDQHPES(ph)PVHTEPMGIQGR ddPTM_K562_Paclitaxel_30min_R1 10 AIPGDQHPESPVHTEPMGIQGR 22 0 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(0.986)PVHT(0.014)EPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(1)PVHTEPMGIQGR;AIPGDQHPES(0.987)PVHT(0.013)EPMGIQGR;AIPGDQHPES(0.994)PVHT(0.006)EPMGIQGR;AIPGDQHPES(0.998)PVHT(0.002)EPMGIQGR;AIPGDQHPES(0.965)PVHT(0.035)EPMGIQGR 153.93 5.31E-18 2258268600 16595.71 17088.92 22762.2 20582.57 17938.24 16269.97 16652.41 20021.9 17413.47 22065.73 TRUE FALSE 16828.10114 18954.74608 17015.60109 19262.49608 20381.73198 19155.22074 19812.11787 18320.91462 19086.1116 17568.72211 0.957844346 1.078891564 0.968516719 1.09640849 1.160114654 1.090302449 1.127692597 1.042814298 1.086368802 1 14.10072164 -6.278821799 24.18228767 1.093001169 1.009464947 0.357039849 0.051088195 546.8687072 760798.6511 0.013896516 0.020675893 5.26E-07 6.278821799 -0.083536223 AIPTESIT(ph)DSPISAQDLLSR ddPTM_K562_Paclitaxel_30min_R1 1 AIPTESITDSPISAQDLLSR 20 0 Q9UDV7-2;Q9UDV7 Q9UDV7-2 ZNF282 Zinc finger protein 282 1 AIPT(0.002)ES(0.009)IT(0.712)DS(0.277)PISAQDLLSR 98.165 0.0017275 0 176.43 223.17 228.76 229.08 257.42 154.56 244.26 285.74 174.3 225.82 TRUE FALSE 178.9005643 247.5364553 171.0067087 214.3878341 292.4849622 181.9690459 290.6070599 261.4646035 191.0422938 179.79776 0.995009973 1.376749384 0.951105891 1.192383231 1.626744193 1.012076267 1.616299668 1.454215021 1.062539899 1 7.490231237 -5.246835204 23.39593077 1.2727864 0.995009489 0.090030744 0.241565924 2511.020409 4022495.246 0.058858326 1.152917804 5.66E-06 5.246835204 -0.277776911 AIPTESITDS(ph)PISAQDLLSR ddPTM_K562_Paclitaxel_30min_R1 2 AIPTESITDSPISAQDLLSR 20 0 Q9UDV7-2;Q9UDV7 Q9UDV7-2 ZNF282 Zinc finger protein 282 1 AIPT(0.084)ES(0.018)IT(0.044)DS(0.844)PIS(0.01)AQDLLSR;AIPTESIT(0.048)DS(0.76)PIS(0.191)AQDLLSR 105.99 0.00036865 34776000 2097.52 1864.71 2954.1 2206.1 2057.63 2056.85 1959.15 2758.9 2239.52 2576.4 TRUE FALSE 2126.891751 2068.305344 2208.300919 2064.61062 2337.914042 2421.603468 2330.888485 2524.514224 2454.635902 2051.328266 1.036836369 1.008276139 1.076522445 1.006475002 1.139707418 1.180505094 1.136282537 1.230672958 1.196608043 1 11.00234266 -6.847329985 5.242042949 1.161940952 1.03373606 0.458255707 0.060457652 0.165933125 7.613518097 0.018018951 0.02071046 1.42E-07 6.847329985 -0.128204892 AIPTVNHSGTFS(ph)PQAPVPTTVPVVDVR ddPTM_K562_Paclitaxel_30min_R1 2 AIPTVNHSGTFSPQAPVPTTVPVVDVR 27 0 Q16513-4;Q16513-3;Q16513-2;Q16513;Q16513-5;B1AL79 Q16513-4 PKN2 Serine/threonine-protein kinase N2 1 AIPTVNHSGT(0.001)FS(0.999)PQAPVPTTVPVVDVR;AIPT(0.009)VNHS(0.019)GT(0.035)FS(0.929)PQAPVPT(0.003)T(0.004)VPVVDVR 137.67 3.20E-19 66580000 1675.88 1761.73 1799.21 1762.68 1375.09 1665.31 2033.06 2109.29 1822.86 2204.12 TRUE FALSE 1699.347491 1954.081639 1344.977183 1649.629594 1562.400538 1960.629346 2418.822522 1930.092649 1997.953848 1754.919134 0.968333787 1.113488138 0.766404079 0.940003196 0.89029774 1.117219197 1.37830996 1.099818568 1.138487699 1 10.77718884 -7.368575664 5.028316884 1.172598549 0.937063298 0.435605936 0.119514524 0.208741672 8.03146866 0.04314563 0.037826205 4.28E-08 7.368575664 -0.235535251 AIPVSPS(ph)AVEEDEDEDGHTVVATAR ddPTM_K562_Paclitaxel_30min_R1 4 AIPVSPSAVEEDEDEDGHTVVATAR 25 0 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2;H0Y3R8 G3V1L9 TJP1 Tight junction protein ZO-1 1 AIPVS(0.437)PS(0.563)AVEEDEDEDGHTVVATAR;AIPVS(0.151)PS(0.849)AVEEDEDEDGHTVVATAR;AIPVS(0.051)PS(0.949)AVEEDEDEDGHTVVATAR;AIPVS(0.04)PS(0.96)AVEEDEDEDGHTVVATAR 182.87 2.87E-31 573205000 6183.8 5727 8222.2 8005.1 6480.7 6125.08 5861.9 7272.7 6310.71 7526.9 TRUE FALSE 6270.392279 6352.293227 6146.403919 7491.688716 7363.481059 7211.276938 6974.164924 6654.83874 6916.881893 5992.913648 1.046301123 1.059967422 1.025611961 1.250091217 1.228698008 1.203300658 1.16373526 1.110451298 1.154176799 1 12.54904187 -6.242021938 24.85273061 1.168231042 1.045560879 0.37969432 0.066371077 749.6349245 959470.0809 0.017931958 0.030998589 5.73E-07 6.242021938 -0.122670163 AIQEGANSIVSSLHQAAAAACLS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 AIQEGANSIVSSLHQAAAAACLSR 24 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 AIQEGANSIVSSLHQAAAAACLS(1)R 112.88 4.82E-07 7830400 268.09 261.79 300.9 452.09 343.02 367.5 292.36 473.23 357.25 491.36 TRUE FALSE 271.8440871 290.3731175 224.9340735 423.0949709 389.7451314 432.670965 347.8337838 433.0261577 391.5654587 391.2205623 0.69486145 0.742223558 0.57495463 1.081474267 0.996228647 1.105951493 0.889098931 1.106859402 1.000881591 1 8.611838389 -6.266256612 24.99996264 1.026650902 0.677834241 0.835865104 0.072088924 140.204252 727617.8569 0.019083406 0.029365392 5.42E-07 6.266256612 -0.348816661 AIS(ph)ETEENSDELSGER ddPTM_K562_Paclitaxel_30min_R1 1 AISETEENSDELSGER 16 0 Q00987-8;A7UKX8;F5GWH7;J3KN53;E7EPE2;Q00987-9;Q00987;Q00987-11 Q00987-8 MDM2;mdm2 E3 ubiquitin-protein ligase Mdm2 1 AIS(0.944)ET(0.042)EENS(0.013)DELSGER 137.27 9.70E-08 21419000 978.57 822.73 1303.8 1091.1 1038.3 689.04 873.95 1169.3 1089.2 1115.4 TRUE FALSE 992.2729991 912.5584437 974.6395648 1021.12173 1179.734039 811.2315694 1039.77745 1069.960666 1193.822527 888.0808677 1.117322797 1.027562328 1.097467134 1.149807148 1.328408348 0.913465878 1.170813929 1.204800942 1.344272318 1 9.794547243 -6.207321708 3.863856404 1.164995307 1.071813572 0.076418448 0.124616046 0.587680974 18.11958527 0.034975503 0.062181929 6.20E-07 6.207321708 -0.093181735 AIS(ph)WTMK ddPTM_K562_Paclitaxel_30min_R1 2 AISWTMK 7 0 Q9NSI8;A0A2R8Y4K8;Q9NSI8-3;S6FRS6 Q9NSI8 SAMSN1 SAM domain-containing protein SAMSN-1 1 AIS(0.656)WT(0.344)MK;AIS(0.863)WT(0.137)MK 109.48 0.0054389 67750000 6779.6 5675.8 11600 8720.1 6821.6 7273.9 7909 11438.2 9388.4 14295.2 TRUE FALSE 6874.535317 6295.503038 8671.436533 8160.831816 7750.817411 8563.824034 9409.691462 10466.45351 10290.19777 11381.83039 0.603992072 0.553118683 0.76186661 0.717005221 0.68098163 0.752411848 0.826729194 0.9195756 0.904089888 1 13.47444497 -7.556543048 0.35524369 1.022923207 0.552234617 0.871314585 0.048413119 0.558546812 0.163367088 0.062742913 0.095826243 2.78E-08 7.556543048 -0.47068859 AISS(ph)DMFFGR ddPTM_K562_Paclitaxel_30min_R1 2 AISSDMFFGR 10 0 Q8N6H7;A0A0D9SF70;G5E9L0;Q8N6H7-2;E9PMU9;H0YDN9;Q8N6H7-3 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 1 AIS(0.258)S(0.742)DMFFGR;AIS(0.272)S(0.728)DMFFGR 130.01 0.00088284 12296400 2723 2301.9 3709.5 2619.22 2228.39 2196.16 2283.1 2154.83 2069.96 2555.2 TRUE FALSE 2761.130401 2553.229227 2772.990846 2451.234952 2531.934445 2585.61814 2716.306306 1971.763741 2268.788907 2034.448837 1.357188419 1.254998002 1.363018227 1.204864387 1.244530901 1.270918242 1.335155869 0.969188168 1.115186022 1 10.99042228 -8.259649765 24.9999524 1.031640313 1.285782769 0.805313273 0.058992563 65.17485862 910472.8082 0.02846866 0.015352816 5.50E-09 8.259649765 0.254142456 AIST(ph)PETPLTK ddPTM_K562_Paclitaxel_30min_R1 2 AISTPETPLTK 11 0 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 1 AIS(0.053)T(0.941)PET(0.005)PLT(0.001)K;AIS(0.023)T(0.976)PET(0.001)PLTK 119.74 0.0073977 33822000 5245.9 4267.6 8610.2 6157.9 4439.9 4101.9 3516.8 6035.8 3706.5 6277.1 TRUE FALSE 5319.358785 4733.551 6436.44852 5762.959856 5044.689548 4829.314371 4184.094441 5523.021116 4062.525886 4997.823574 1.064335046 0.947122468 1.287850286 1.153093896 1.009377277 0.966283483 0.837183302 1.10508525 0.812859003 1 12.28708426 -6.974099798 3.547470745 0.946222635 1.112979239 0.342840782 0.109864759 0.283423523 7.597194922 0.036578092 0.040350588 1.06E-07 6.974099798 0.166756604 AIST(ph)PETPLTKR ddPTM_K562_Paclitaxel_30min_R1 1 AISTPETPLTKR 12 1 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 1 AIS(0.17)T(0.83)PETPLTKR 92.151 0.018898 27903000 866.6 748.81 1426.7 890.59 889.53 740.48 923.82 784.94 962.5 1100 TRUE FALSE 878.7350737 830.5676081 1066.51194 833.4715435 1010.699046 871.7937311 1099.110022 718.2544476 1054.952426 875.8193962 1.003329085 0.948332055 1.217730441 0.951647734 1.154003954 0.995403544 1.254950538 0.820094246 1.204531928 1 9.77448959 AIT(ph)PPQQPYK ddPTM_K562_Paclitaxel_30min_R1 1 AITPPQQPYK 10 0 J3QSD7;Q9NYV4-3;Q9NYV4-2;Q9NYV4 J3QSD7 CDK12 Cyclin-dependent kinase 12 1 AIT(1)PPQQPYK 97.813 0.026961 81240000 3921.6 3411.4 5814.8 4043.9 3256.2 3051 3158.1 4216.4 3842.4 5226.5 TRUE FALSE 3976.514499 3783.868189 4346.781823 3784.542354 3699.749568 3592.052012 3757.332989 3858.190502 4211.479688 4161.336431 0.955585919 0.909291582 1.044563903 0.909453589 0.889077254 0.863196733 0.902914977 0.927151785 1.012049797 1 12.02283122 -8.757169246 22.68616957 1.006024978 0.924073478 0.32816142 0.046264126 38.53653944 204768.5784 0.036571541 0.012650477 1.75E-09 8.757169246 -0.0819515 AITSLLGGGS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 AITSLLGGGSPK 12 0 A0A590UJS4;Q6KC79-2;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 AITSLLGGGS(1)PK;AITSLLGGGS(1)PK 180.11 0.00031361 294430000 11633.4 10475.7 17512.6 13005.6 10483.7 8976.9 8919.9 12466.8 10842.5 14718.9 TRUE FALSE 11796.30349 11619.47235 13091.32754 12171.47903 11911.75743 10568.82717 10612.40446 11407.66752 11883.97057 11719.1801 1.006580955 0.991491918 1.117085617 1.038594759 1.016432662 0.901840153 0.905558612 0.973418569 1.014061604 1 13.51658402 -7.065503832 6.336749972 0.954039919 1.039268417 0.410538166 0.045370324 0.235390567 18.15594521 0.015978903 0.016128797 8.60E-08 7.065503832 0.085228498 AKADS(ph)PVNGLPK ddPTM_K562_Paclitaxel_30min_R1 1 AKADSPVNGLPK 12 1 A0A0A0MSF3;Q96S94-3;Q96S94 A0A0A0MSF3 CCNL2 Cyclin-L2 1 AKADS(1)PVNGLPK 122.78 0.0058095 13638000 1719.6 1146.2 4368.8 2092.9 1428.8 1088.5 1084.9 1821.1 2044.8 2687.6 TRUE FALSE 1743.679705 1271.345992 3265.842407 1958.670761 1623.42675 1281.530192 1290.754111 1666.386188 2241.212176 2139.865645 0.81485476 0.594124213 1.526190401 0.915324178 0.758658261 0.598883484 0.603193997 0.778734026 1.047361166 1 11.0633045 AKAGLESGAEPGDGDS(ph)DTTK ddPTM_K562_Paclitaxel_30min_R1 1 AKAGLESGAEPGDGDSDTTK 20 1 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 AKAGLESGAEPGDGDS(0.95)DT(0.04)T(0.01)K 148.15 8.53E-13 18839000 3066.9 1987.6 6788.4 2985.8 2314.9 1705.2 1744.1 3163.6 2532.2 4297.9 TRUE FALSE 3109.846062 2204.61289 5074.584462 2794.304152 2630.228572 2007.593278 2075.03387 2894.832433 2775.429124 3421.985621 0.908784082 0.644249606 1.482935647 0.816573902 0.768626424 0.58667496 0.606382989 0.845951081 0.811058091 1 11.74061798 -6.505040525 24.91391817 0.749104041 1.004305582 0.190553879 0.221619373 1131.17448 1579865.951 0.063212769 0.09159249 3.13E-07 6.505040525 0.255201541 AKPAMPQDSVPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 AKPAMPQDSVPSPR 14 1 P53396 P53396 ACLY ATP-citrate synthase 1 AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR;AKPAMPQDSVPS(1)PR 126.8 0.00023889 649752000 10698.5 10233.7 17077.3 11503.4 9904.9 9994.3 10493.8 15456.6 13475.8 18015.4 TRUE FALSE 10848.31201 11351.04997 12765.92441 10765.62341 11254.11507 11766.64878 12484.94377 14143.46535 14770.2108 14343.85159 0.756303977 0.791352999 0.889992784 0.750539236 0.784595058 0.820327002 0.870403858 0.986029817 1.029724179 1 13.80814485 -8.143230329 1.874464034 1.018371449 0.798281137 0.864525089 0.036691908 0.127604598 0.850802747 0.02568313 0.011480863 7.19E-09 8.143230329 -0.220090312 AKPPADPAAAAS(ph)PCR ddPTM_K562_Paclitaxel_30min_R1 3 AKPPADPAAAASPCR 15 1 Q9GZT9-2;Q9GZT9 Q9GZT9-2 EGLN1 Egl nine homolog 1 1 AKPPADPAAAAS(1)PCR;AKPPADPAAAAS(1)PCR;AKPPADPAAAAS(1)PCR 114.56 0.0010574 117682000 10435.8 10320.9 17763.3 12330 10042.4 9792.3 9105.6 12359.6 10242.5 13830.4 TRUE FALSE 10581.9334 11447.77077 13278.73522 11539.20899 11410.3449 11528.82691 10833.34007 11309.57483 11226.33789 11011.75689 0.960966856 1.039595305 1.205868905 1.047898996 1.036196587 1.046956179 0.983797606 1.027045452 1.019486536 1 13.42675704 -7.164214014 1.739761865 1.012034938 1.070060334 0.135335558 0.058165694 0.742215867 4.456689712 0.025093553 0.024567189 6.85E-08 7.164214014 0.058025397 AKS(ph)LDGVTNDR ddPTM_K562_Paclitaxel_30min_R1 1 AKSLDGVTNDR 11 1 E9PRL8;E9PQ71;E9PIP9;E9PJ54;E9PM00;Q9UBM7 E9PRL8 DHCR7 7-dehydrocholesterol reductase 1 AKS(0.999)LDGVT(0.001)NDR 101.38 0.026153 17043000 1845.2 1102.2 2859.4 1620 1251 1580.3 1097.2 1672.9 1392.9 1879.4 TRUE FALSE 1871.038493 1222.541923 2137.509105 1516.100451 1421.40738 1860.544016 1305.387972 1530.776703 1526.694269 1496.377248 1.25037887 0.817001144 1.428456031 1.013180635 0.949899085 1.243365614 0.872365557 1.022988491 1.020260279 1 10.54725822 -7.253359536 0.880105386 0.994414283 1.121620108 0.086815653 0.171134576 1.695465857 2.830199474 0.104456065 0.097964401 5.58E-08 7.253359536 0.127205825 AKS(ph)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK ddPTM_K562_Paclitaxel_30min_R1 8 AKSPQPPVEEEDEHFDDTVVCLDTYNCDLHFK 32 1 A0A1W2PPS1;Q00839-2;Q00839;A0A1W2PP35;Q5RI18;A0A1W2PRI6 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 AKS(0.968)PQPPVEEEDEHFDDT(0.032)VVCLDTYNCDLHFK;AKS(1)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK;AKS(0.99)PQPPVEEEDEHFDDT(0.01)VVCLDTYNCDLHFK;AKS(0.998)PQPPVEEEDEHFDDT(0.002)VVCLDTYNCDLHFK;AKS(0.957)PQPPVEEEDEHFDDT(0.043)VVCLDT(0.001)YNCDLHFK;AKS(0.996)PQPPVEEEDEHFDDT(0.004)VVCLDTYNCDLHFK;AKS(0.974)PQPPVEEEDEHFDDT(0.026)VVCLDTYNCDLHFK;AKS(0.943)PQPPVEEEDEHFDDT(0.057)VVCLDTYNCDLHFK 95.823 1.19E-10 4843509200 10015.51 7701.97 18332.7 10288.76 7570.77 6627 6401.24 10655.62 8870.65 15009.2 TRUE FALSE 10155.75804 8542.897131 13704.38315 9628.884984 8602.037048 7802.205402 7615.841873 9750.358571 9722.715568 11950.3168 0.8498317 0.714867838 1.146779904 0.805743073 0.719816654 0.652886909 0.637292048 0.815907957 0.813594797 1 13.54476124 -3.559916075 19.38455249 0.804540473 0.851305853 0 0.1495949 0 0 0.035469106 0 0.000275476 3.559916075 0.04676538 AKSPT(ph)PDGS(ph)ER ddPTM_K562_Paclitaxel_30min_R1 1 AKSPTPDGSER 11 1 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 2 AKS(0.154)PT(0.846)PDGS(1)ER 133.98 0.0071751 12861000 7426.2 6930.2 12276 8545.8 6877.7 5829.6 5319.8 8080.6 6823.3 9194.6 TRUE FALSE 7530.189712 7686.862672 9176.771972 7997.710638 7814.55918 6863.397708 6329.204279 7394.102592 7478.708452 7320.735473 1.028611092 1.050012352 1.253531425 1.092473655 1.067455478 0.93752844 0.864558527 1.010021824 1.02157884 1 12.83777288 -7.09551993 3.498533813 0.961430028 1.11060843 0.474627309 0.069862128 0.226249235 5.180722759 0.025606536 0.026166216 8.03E-08 7.09551993 0.149178403 AKSPTPES(ph)STIASYVTLR ddPTM_K562_Paclitaxel_30min_R1 1 AKSPTPESSTIASYVTLR 18 1 B4DJX4;Q9HAU0-5;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;A0JP02;H0YGJ6 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 AKS(0.001)PT(0.025)PES(0.702)S(0.196)T(0.076)IAS(0.001)YVTLR 100.73 0.0031439 15692000 852.55 787.94 1311.4 938.19 663.35 732.12 760.95 955.47 761.91 1076.6 TRUE FALSE 864.4883303 873.9699538 980.3208508 878.0186926 753.7095006 861.9512025 905.3362901 874.2968596 835.0948598 857.188329 1.008516216 1.019577524 1.143646988 1.024300802 0.879281104 1.005556391 1.056169641 1.019958894 0.974225653 1 9.743468397 -6.522647125 25 0.990492817 1.058562298 0.241997652 0.054217604 12.47530605 1346636.621 0.016908504 0.022066423 3.00E-07 6.522647125 0.068069481 AKT(ph)QTPPVS(ph)PAPQPTEER ddPTM_K562_Paclitaxel_30min_R1 1 AKTQTPPVSPAPQPTEER 18 1 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 2 AKT(0.5)QT(0.5)PPVS(1)PAPQPTEER 95.742 0.0045039 35015000 3815.3 3558.3 6110.1 4338.7 3081.9 3373 3178.7 4455.4 2498.5 5303 TRUE FALSE 3868.725971 3946.807227 4567.529686 4060.435201 3501.706957 3971.154191 3781.841731 4076.88596 2738.492089 4222.245689 0.916272111 0.934764937 1.081777334 0.961676676 0.829347038 0.940531291 0.895694379 0.965572887 0.648586627 1 12.04379482 -6.619546019 7.097865316 0.882397756 0.981107136 0.177033093 0.099146688 0.385265402 24.34888306 0.028551017 0.036917333 2.40E-07 6.619546019 0.098709381 AKTQT(ph)PPVSPAPQPTEERLPS(ph)SPVYEDAASFK ddPTM_K562_Paclitaxel_30min_R1 1 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 2 AKT(0.266)QT(0.64)PPVS(0.097)PAPQPT(0.046)EERLPS(0.439)S(0.439)PVY(0.071)EDAAS(0.003)FK 45.749 0.015639 62679000 5662.4 4125.5 11467 6499.6 4402.7 2852.8 3319.7 6301 5626.5 7555.4 TRUE FALSE 5741.69107 4575.936042 8572.014028 6082.744747 5002.422278 3358.704025 3949.595745 5765.69072 6166.950465 6015.605333 0.954466052 0.760677569 1.424962835 1.011160874 0.831574214 0.558331845 0.656558322 0.958455617 1.025158754 1 12.5544942 -6.745403395 5.265282453 0.812142786 1.048217593 0.178185155 0.206085127 0.296292672 23.1959647 0.066723221 0.082857686 1.80E-07 6.745403395 0.236074807 AKTQTPPVSPAPQPTEERLPS(ph)SPVYEDAASFK ddPTM_K562_Paclitaxel_30min_R1 1 AKTQTPPVSPAPQPTEERLPSSPVYEDAASFK 32 2 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 AKTQTPPVSPAPQPT(0.17)EERLPS(0.402)S(0.402)PVY(0.024)EDAAS(0.001)FK 92.924 3.00E-10 15410000 2107.5 1662.2 3955.6 2459.5 1715.2 1734.4 1264.5 1970.7 2359.1 2438.1 TRUE FALSE 2137.011502 1843.684617 2956.959858 2301.758678 1948.839279 2041.971488 1504.432274 1803.276734 2585.702096 1941.213882 1.100863497 0.94975862 1.523252994 1.185731619 1.003928159 1.051904433 0.774995629 0.928942839 1.332002681 1 10.92274337 -6.755088533 6.780452633 1.001147171 1.197340551 0.172241162 0.185814385 0.247239786 54.05224763 0.058307176 0.071530787 1.76E-07 6.755088533 0.19619338 ALAAAGYDVEKNNSR ddPTM_K562_Paclitaxel_30min_R1 2 ALAAAGYDVEKNNSR 15 1 P10412;P22492;Q02539;P16403;P16402 P10412;P16403;P16402 HIST1H1E;HIST1H1T;HIST1H1A;HIST1H1C;HIST1H1D Histone H1.4;Histone H1t;Histone H1.1;Histone H1.2;Histone H1.3 0 ; 161.87 0.00037906 65550000 1777.55 1696.8 3094.2 2018.55 1625.7 1670.77 1526.08 2292.5 2820.4 2364.61 FALSE TRUE 1802.441184 1882.062362 2313.030941 1889.089238 1847.147863 1967.057601 1815.645713 2097.737816 3091.312022 1882.701184 0.957369762 0.999660689 1.228570397 1.003393026 0.981115792 1.044806057 0.96438337 1.11421708 1.641955743 1 10.87858832 -8.540267091 24.9954376 1.340014266 1.031215821 0.342069538 0.16127974 239.8190467 344728.7376 0.10014717 0.037868378 2.88E-09 8.540267091 -0.308798445 ALAAGADSPKTEEARPSPAPGPGT(ph)PTGTPTR ddPTM_K562_Paclitaxel_30min_R1 1 ALAAGADSPKTEEARPSPAPGPGTPTGTPTR 31 2 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 ALAAGADSPKTEEARPS(0.002)PAPGPGT(0.89)PT(0.075)GT(0.026)PT(0.007)R 78.653 0.00022666 20915000 1148.2 905.29 1865.4 958.63 807.96 1137.5 914.13 1328.3 1423.3 1389.8 TRUE FALSE 1164.278343 1004.132624 1394.456699 897.1477625 918.0178309 1339.219654 1087.581395 1215.452624 1560.014324 1106.557997 1.052162061 0.907437863 1.260174977 0.810755301 0.829615649 1.210257083 0.982850784 1.098408422 1.409789933 1 10.11186335 -8.528473348 24.91190817 1.221296423 1.009259319 0.185318342 0.165058183 225.2022517 1002753.215 0.107180762 0.040776363 2.96E-09 8.528473348 -0.212037104 ALAEEASEEELPS(ph)DVDLNDPYFAEEVK ddPTM_K562_Paclitaxel_30min_R1 1 ALAEEASEEELPSDVDLNDPYFAEEVK 27 0 Q9H501 Q9H501 ESF1 ESF1 homolog 1 ALAEEASEEELPS(0.999)DVDLNDPY(0.001)FAEEVK 102.67 3.29E-08 2556600 972.62 623.59 1890.1 985.6 844.63 626.18 499.01 1052.3 752.82 1491.5 TRUE FALSE 986.2396808 691.675665 1412.920879 922.3880274 959.6829057 737.224231 593.6945425 962.9005467 825.1317247 1187.531481 0.830495609 0.582448277 1.189796566 0.776727221 0.808132602 0.620803947 0.499940045 0.810842122 0.694829348 1 10.21375004 -7.021732449 3.510467292 0.699741825 0.848087485 0.076639561 0.185004361 0.539431842 14.0016836 0.061902298 0.066000952 9.51E-08 7.021732449 0.14834566 ALAMPGRPES(ph)PPVFR ddPTM_K562_Paclitaxel_30min_R1 2 ALAMPGRPESPPVFR 15 1 K7ERU2;Q63ZY3-3;Q63ZY3;Q63ZY3-2 K7ERU2 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 ALAMPGRPES(1)PPVFR;ALAMPGRPES(1)PPVFR 86.738 0.012084 132021000 4837.9 4132.8 4704.9 4810.7 4061.4 4188.5 4219.2 4891.8 4487.3 5118.3 TRUE FALSE 4905.645526 4584.03308 3517.089806 4502.163234 4614.63144 4931.271666 5019.771174 4476.211056 4918.325215 4075.187651 1.20378396 1.124864294 0.86304978 1.104774459 1.132372748 1.210072293 1.231788964 1.09840612 1.206895396 1 11.99265078 -6.705520012 3.716447332 1.160022495 1.05908028 0.104498738 0.102105441 0.42830944 12.00908556 0.032033553 0.040960975 1.97E-07 6.705520012 -0.100942215 ALAPS(ph)PPAEFIYYCVDEDELKR ddPTM_K562_Paclitaxel_30min_R1 2 ALAPSPPAEFIYYCVDEDELKR 22 1 K7EPZ6;A0A0A0MS90;Q9UIS9-4;Q9UIS9-11;Q9UIS9-7;K7EN65 K7EPZ6 MBD1 Methyl-CpG-binding domain protein 1 1 ALAPS(0.59)PPAEFIY(0.19)Y(0.22)CVDEDELKR;ALAPS(0.991)PPAEFIY(0.008)Y(0.001)CVDEDELKR 75.608 0.0013785 39419000 3975.9 3543.2 6149.9 4022.8 3431.9 2805.6 2780.7 4870.9 4605.3 6216.4 TRUE FALSE 4031.574867 3930.058558 4597.281684 3764.795613 3899.382883 3303.133767 3308.323309 4457.086642 5047.659642 4949.494268 0.814542789 0.794032349 0.928838672 0.760642484 0.787834609 0.667367935 0.668416434 0.900513548 1.019833415 1 12.2730654 -8.51839453 4.661945716 1.000692186 0.776833243 0.645960554 0.070448232 0.131621036 7.714865843 0.052086557 0.02054778 3.03E-09 8.51839453 -0.223858943 ALAPS(ph)PPAEFIYYCVDEDELQPYTNRR ddPTM_K562_Paclitaxel_30min_R1 1 ALAPSPPAEFIYYCVDEDELQPYTNRR 27 1 Q9UIS9-6;Q9UIS9-5;Q9UIS9;Q9UIS9-9;Q9UIS9-12 Q9UIS9-6 MBD1 Methyl-CpG-binding domain protein 1 1 ALAPS(0.439)PPAEFIY(0.28)Y(0.28)CVDEDELQPY(0.001)T(0.001)NRR 45.243 0.027374 35511000 697.75 641.32 564.42 465.65 407.03 628.42 653.86 785.55 787.87 813 TRUE FALSE 707.5206527 711.3414864 421.9251903 435.7852932 462.4743771 739.8614635 777.9265216 718.8126243 863.5484338 647.3101537 1.09301646 1.098919092 0.651813026 0.673224869 0.71445562 1.142978307 1.201783283 1.110460913 1.334056679 1 9.338313324 -7.322755515 7.598628576 1.168881798 0.840164918 0.471842421 0.164588086 0.286040751 31.84383523 0.063599852 0.056119942 4.76E-08 7.322755515 -0.32871688 ALAS(ph)PEQLAQLPSSGVPR ddPTM_K562_Paclitaxel_30min_R1 1 ALASPEQLAQLPSSGVPR 18 0 Q9Y3Q8;Q9Y3Q8-2;H7BZ77 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 ALAS(1)PEQLAQLPSSGVPR 135.79 4.17E-09 21658000 2719.5 2691 3375.7 3073.7 2989.7 2699.5 2567.7 3444.3 2713.9 3328.3 TRUE FALSE 2757.58139 2984.81248 2523.462785 2876.566639 3396.947756 3178.218422 3054.907671 3151.685216 2974.582221 2649.990633 1.040600429 1.126348314 0.952253473 1.085500682 1.281871609 1.199331946 1.152799422 1.18931938 1.122487825 1 11.37177154 -6.535085982 24.96861129 1.170284272 1.043475749 0.314804519 0.077744725 229.5134915 469443.2112 0.022038845 0.028472381 2.92E-07 6.535085982 -0.126808524 ALASGIT(ph)MSS(ph)EVVNR ddPTM_K562_Paclitaxel_30min_R1 1 ALASGITMSSEVVNR 15 0 Q9Y6X0 Q9Y6X0 SETBP1 SET-binding protein 2 ALAS(0.366)GIT(0.673)MS(0.206)S(0.755)EVVNR 107.99 0.0059324 41198000 0 0 0 0 0 0 0 64.437 0 0 TRUE FALSE 0 0 0 0 0 0 0 58.96267465 0 0 0 ALASNTSFFSGCS(ph)PIEEEAH ddPTM_K562_Paclitaxel_30min_R1 2 ALASNTSFFSGCSPIEEEAH 20 0 O95239;Q2VIQ3 O95239 KIF4A;KIF4B Chromosome-associated kinesin KIF4A;Chromosome-associated kinesin KIF4B 1 ALASNTSFFS(0.002)GCS(0.998)PIEEEAH;ALASNTSFFS(0.009)GCS(0.991)PIEEEAH 205.98 1.83E-23 114287000 2219.46 2534.39 2765.34 2032.51 1918.07 1910.11 2017.66 2823.41 2430.74 3031.67 TRUE FALSE 2250.539288 2811.103271 2067.195716 1902.153906 2179.343607 2248.841189 2400.500452 2583.543697 2664.223438 2413.81399 0.932358209 1.164589849 0.856402243 0.788028371 0.902863111 0.931654717 0.994484439 1.070315985 1.103740159 1 11.23709879 -8.004702277 2.726560112 1.064842018 0.928973101 0.276353907 0.093392106 0.401971987 5.993210984 0.053278763 0.030073483 9.89E-09 8.004702277 -0.135868917 ALDQASEEIWNDFR ddPTM_K562_Paclitaxel_30min_R1 1 ALDQASEEIWNDFR 14 0 F8VZX9;F8VY03;G3V1U3;F8VRR3;F8VQZ7;P50579-3;P50579-2;P50579 F8VZX9 METAP2 Methionine aminopeptidase 2 0 131.32 0.00046229 5188000 626.55 706.98 748.63 724.96 841.93 677.85 638.87 694.5 615.16 745.85 FALSE TRUE 635.3236331 784.1704673 559.6290976 678.4643104 956.61512 798.05718 760.0922474 635.4978901 674.2488666 593.8453606 1.069846925 1.320496074 0.942381864 1.142493241 1.610882535 1.343880466 1.279949795 1.070140364 1.135394686 1 9.213943487 -8.266373453 24.0077922 1.077075618 1.249612573 0.18036002 0.17114849 481.632811 2343454.816 0.096853236 0.048933026 5.42E-09 8.266373453 0.172536955 ALDQASEEIWNDFREAAEAHR ddPTM_K562_Paclitaxel_30min_R1 2 ALDQASEEIWNDFREAAEAHR 21 1 F8VZX9;F8VY03;G3V1U3;F8VRR3;F8VQZ7;P50579-3;P50579-2;P50579 F8VZX9 METAP2 Methionine aminopeptidase 2 0 ; 97.352 0.0006907 18276000 3669.6 3772.8 4508.7 4394.5 3372.8 3463 3389.2 3921.3 5655.5 4663.8 FALSE TRUE 3720.985722 4184.727063 3370.422922 4112.656439 3832.232462 4077.114427 4032.283007 3588.161089 6198.736044 3713.315 1.002065734 1.126951811 0.907658769 1.107543109 1.032024609 1.097971604 1.085898451 0.966295908 1.669326746 1 11.85849199 -8.713082256 24.99999153 1.334674316 1.044575794 0.341545649 0.163140422 99.70583065 51546.54644 0.098614619 0.037272634 1.94E-09 8.713082256 -0.290098522 ALDQSDNDMS(ph)AVYR ddPTM_K562_Paclitaxel_30min_R1 2 ALDQSDNDMSAVYR 14 0 K7EMM8;Q49A26-5;Q49A26-4;Q49A26-2;Q49A26-3;Q49A26 K7EMM8 GLYR1 Putative oxidoreductase GLYR1 1 ALDQS(0.075)DNDMS(0.925)AVYR;ALDQS(0.123)DNDMS(0.877)AVYR 118.52 0.0015528 35837000 1917.59 1665.27 2536.6 2174.53 1903.34 1766.93 1808.27 2229.88 1837.34 2549.35 TRUE FALSE 1944.442176 1847.08981 1896.203958 2035.065379 2162.607132 2080.270227 2151.379793 2040.437776 2013.824716 2029.791071 0.957951882 0.909990115 0.934186767 1.002598449 1.065433366 1.024869139 1.059902087 1.005245222 0.992133991 1 10.98711552 -6.335763216 3.698605293 1.027031839 0.930818459 0.722797031 0.025006388 0.117236303 3.106048416 0.007355233 0.011618352 4.62E-07 6.335763216 -0.09621338 ALDSEVDPDPEGDLGMPAQPHS(ph)PTGEAQHR ddPTM_K562_Paclitaxel_30min_R1 1 ALDSEVDPDPEGDLGMPAQPHSPTGEAQHR 30 0 Q6IA17-2;C9JFX4 Q6IA17-2 SIGIRR 1 ALDSEVDPDPEGDLGMPAQPHS(0.84)PT(0.16)GEAQHR 71.528 0.00014048 18125000 1479.4 1603.3 1793.8 1659 1259.9 1350 1517.4 1924.9 1639.6 1627.9 TRUE FALSE 1500.116164 1778.353716 1340.933005 1552.599165 1431.51971 1589.403545 1805.318729 1761.36773 1797.090906 1296.133086 1.157378189 1.372045614 1.034564289 1.197870174 1.104454261 1.226265699 1.392849814 1.358940489 1.386501837 1 10.33999815 -7.548459979 9.780200366 1.313952315 1.176696428 0.119852386 0.132846713 0.562268921 204.1827523 0.048315687 0.037606293 2.83E-08 7.548459979 -0.137255887 ALEAASLSQHPPSLCIS(ph)DS(ph)EEEEEER ddPTM_K562_Paclitaxel_30min_R1 1 ALEAASLSQHPPSLCISDSEEEEEER 26 0 E9PPY3;O43159 E9PPY3 RRP8 Ribosomal RNA-processing protein 8 2 ALEAAS(0.001)LS(0.018)QHPPS(0.13)LCIS(0.893)DS(0.958)EEEEEER 83.939 0.00017598 7019000 269.72 118.9 375.3 266.32 290.89 187.56 356.4 463.13 298.02 271.84 TRUE FALSE 273.4969122 131.8819041 280.5508733 249.2394272 330.5141428 220.8211325 424.0250395 423.7842157 326.6461526 216.4388588 1.263622039 0.60932637 1.29621305 1.151546578 1.527055468 1.020247167 1.959098481 1.957985817 1.509184416 1 7.757815729 -6.809044179 0.948615869 1.620539742 0.975937977 0.245597519 0.34987869 0.67121491 1.306182847 0.169630657 0.254489043 1.55E-07 6.809044179 -0.644601765 ALEAELDAQHLSETFDNIDNLS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 ALEAELDAQHLSETFDNIDNLSPK 24 0 P25054-2;P25054-3;P25054;A0A2Q2SV78;E9PFT7 P25054-2 APC Adenomatous polyposis coli protein 1 ALEAELDAQHLSETFDNIDNLS(1)PK 150.06 1.23E-25 13813000 3718.4 3163.1 5722.4 3859.5 2378.8 2606.4 2763.1 3604.5 3465.5 4377.9 TRUE FALSE 3770.469072 3508.457955 4277.709346 3611.968944 2702.832833 3068.608444 3287.383801 3298.275226 3798.376759 3485.681577 1.081702097 1.006534268 1.227223214 1.036230322 0.775410138 0.880346749 0.94311076 0.946235379 1.089708476 1 11.76722507 -6.531184654 24.99747863 0.931171249 1.101363892 0.406058292 0.090722321 183.9873189 553725.6412 0.027521511 0.035589657 2.94E-07 6.531184654 0.170192643 ALEEGDGSVSGS(ph)SPRSDISQPASQDGMR ddPTM_K562_Paclitaxel_30min_R1 1 ALEEGDGSVSGSSPRSDISQPASQDGMR 28 1 Q8N3X1;Q8N3X1-2 Q8N3X1 FNBP4 Formin-binding protein 4 1 ALEEGDGS(0.042)VS(0.156)GS(0.532)S(0.254)PRS(0.016)DIS(0.001)QPASQDGMR 76.423 7.19E-05 22124000 440.26 495.27 434.49 343.33 402.31 364.77 334.02 363.31 644.41 370.46 TRUE FALSE 446.4249983 549.3452535 324.7976258 321.3103505 457.1114332 429.4568379 397.3985513 332.4445478 706.3084598 294.9600487 1.513510051 1.862439527 1.101158029 1.089335156 1.549740161 1.455983072 1.347296195 1.127083309 2.394590261 1 8.204375749 ALEEGDGSVSGSSPRS(ph)DISQPASQDGMR ddPTM_K562_Paclitaxel_30min_R1 1 ALEEGDGSVSGSSPRSDISQPASQDGMR 28 1 Q8N3X1;Q8N3X1-2 Q8N3X1 FNBP4 Formin-binding protein 4 1 ALEEGDGS(0.059)VS(0.057)GS(0.08)S(0.08)PRS(0.682)DIS(0.033)QPAS(0.009)QDGMR 50.285 0.011639 26340000 734.19 444.6 876.54 476.29 348.28 476.21 426.67 635.96 656.73 707.55 TRUE FALSE 744.4709252 493.1429315 655.2466361 445.7428912 395.7216324 560.6591572 507.6284051 581.9312285 719.8118508 563.3509216 1.321504761 0.875374323 1.163123394 0.791234866 0.702442505 0.995221869 0.901087378 1.032981763 1.277732623 1 9.137890073 -10.43110294 11.20586204 1.000012456 0.989516917 0 0.191812663 0 0 0.186934964 0.045338388 3.71E-11 10.43110294 -0.010495539 ALEIIPR ddPTM_K562_Paclitaxel_30min_R1 1 ALEIIPR 7 0 Q99832-2;Q99832-4;Q99832-3;Q99832 Q99832-2 CCT7 T-complex protein 1 subunit eta 0 114.19 0.024191 4877900 1433.1 1326.2 1679 1277.8 1256.9 1301.6 1101.8 1482.6 1136.3 1303.7 FALSE TRUE 1453.167821 1470.999001 1255.115684 1195.847627 1428.111059 1532.420485 1310.860798 1356.643876 1245.446692 1038.005224 1.399961953 1.417140267 1.20916124 1.152063207 1.375822612 1.476312882 1.262865318 1.306972108 1.199846266 1 10.01959799 -9.121351733 1.550837805 1.000169682 1.326983195 0.53997954 0.093033959 0.475494307 2.395355368 0.096913309 0.02822472 7.56E-10 9.121351733 0.326813513 ALEIS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 ALEISPR 7 0 Q8IY92-2;Q8IY92 Q8IY92-2 SLX4 Structure-specific endonuclease subunit SLX4 1 ALEIS(1)PR;ALEIS(1)PR 88.37 0.022588 8857900 3563.8 3285.5 4221.5 3757.3 3643.4 3722.9 3278.4 3932.1 3162.4 4490 TRUE FALSE 3613.704195 3644.222001 3155.730114 3516.323595 4139.692763 4383.104043 3900.459286 3598.043562 3466.16265 3574.935535 1.010844576 1.019381179 0.882737628 0.983604756 1.157976898 1.226065197 1.091057236 1.0064639 0.969573469 1 11.80370151 -6.634479711 8.01114904 1.083617511 0.968929141 0.275378154 0.079737736 0.327130472 21.79937465 0.026127224 0.033746246 2.32E-07 6.634479711 -0.114688369 ALELEQER ddPTM_K562_Paclitaxel_30min_R1 1 ALELEQER 8 0 P26038 P26038 MSN Moesin 0 123.98 0.018648 19044000 857.51 780.23 1060 1021.8 795.01 797.84 831.08 1159.2 856.74 1122.9 FALSE TRUE 869.5177856 865.41815 792.3898901 956.2663214 903.3038216 939.3257218 988.7730915 1060.718725 939.033705 894.0523636 0.972558008 0.967972554 0.886290247 1.069586481 1.010347781 1.050638374 1.105945392 1.186416778 1.050311753 1 9.804215521 -6.794781702 1.112934596 1.095414313 0.947694846 0.453487759 0.058080614 0.408711776 1.077329056 0.025304352 0.036498157 1.60E-07 6.794781702 -0.147719467 ALELPLAAS(ph)SIPRPRT(ph)PSPESHR ddPTM_K562_Paclitaxel_30min_R1 1 ALELPLAASSIPRPRTPSPESHR 23 2 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 2 ALELPLAAS(0.437)S(0.437)IPRPRT(0.562)PS(0.562)PES(0.002)HR 62.966 0.015359 43957000 2764.4 2376.7 3127.3 2661.7 2527.8 2595.9 2323.7 2850.1 1941.8 3214.3 TRUE FALSE 2803.110129 2636.196143 2337.774437 2490.990475 2872.129156 3056.246417 2764.609944 2607.966215 2128.318566 2559.223896 1.095296951 1.030076402 0.913470072 0.973338237 1.122265684 1.1942083 1.080253255 1.019045743 0.831626561 1 11.32149065 -8.582104789 7.533602902 0.916950636 1.055729828 0.318498958 0.082249067 0.315536912 33.74527915 0.062029119 0.023165699 2.62E-09 8.582104789 0.138779192 ALELPLAASSIPRPRT(ph)PS(ph)PESHRSPAEGSER ddPTM_K562_Paclitaxel_30min_R1 1 ALELPLAASSIPRPRTPSPESHRSPAEGSER 31 3 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 2 ALELPLAAS(0.083)S(0.215)IPRPRT(0.624)PS(0.498)PES(0.2)HRS(0.2)PAEGS(0.18)ER 41.047 0.017191 94232000 555.41 520.64 532.01 547.17 386.22 497.35 345.42 532.68 579.06 585.95 TRUE FALSE 563.1874536 577.4852359 397.6974957 512.0769652 438.8297028 585.5480394 410.9616418 487.4255091 634.6813003 466.5330684 1.20717585 1.237822729 0.852452961 1.097622012 0.940618645 1.255105113 0.880884271 1.044782336 1.360420822 1 8.865835534 -10.870442 15.33201873 1.000023686 1.086468891 0.027782005 0.161594844 0 0 0.152956087 0.0370973 1.35E-11 10.870442 0.086445205 ALFDY(ph)NPNEDK ddPTM_K562_Paclitaxel_30min_R1 1 ALFDYNPNEDK 11 0 S4R337;Q5T2T1-2;Q5T2T1 S4R337 MPP7 MAGUK p55 subfamily member 7 1 ALFDY(1)NPNEDK 72.434 0.019589 17481000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 ALGPAATMAVELHYEEGS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 ALGPAATMAVELHYEEGSPR 20 0 O14523-2;O14523;E9PK05 O14523-2 C2CD2L C2 domain-containing protein 2-like 1 ALGPAATMAVELHYEEGS(1)PR;ALGPAATMAVELHY(0.008)EEGS(0.992)PR;ALGPAATMAVELHYEEGS(1)PR;ALGPAATMAVELHYEEGS(1)PR 142.41 1.85E-13 31941700 2167.49 2263.94 2795.49 2599.7 2489.69 2305.13 2401.77 2881.91 2282.79 3142.52 TRUE FALSE 2197.841547 2511.124625 2089.733975 2432.966878 2828.827929 2713.91244 2857.493319 2637.073757 2502.062179 2502.072699 0.878408348 1.003617771 0.835201142 0.97238057 1.130593819 1.084665702 1.142050477 1.05395569 0.999995796 1 11.28890799 -6.572883267 5.64714133 1.074886706 0.91342817 0.607456399 0.059111731 0.124289126 8.862143216 0.017335151 0.02273227 2.67E-07 6.572883267 -0.161458536 ALHSFIT(ph)PPTTPQLR ddPTM_K562_Paclitaxel_30min_R1 2 ALHSFITPPTTPQLR 15 0 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;J3QR75 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 ALHS(0.001)FIT(0.998)PPT(0.001)TPQLR;ALHSFIT(0.999)PPTTPQLR 135.91 2.75E-05 127103000 1443.92 1212.68 1511.7 1413.72 1390.11 1427.9 1378.34 1524.53 1011.25 1703 TRUE FALSE 1464.139335 1345.084503 1130.052639 1323.050327 1579.466517 1681.118016 1639.87282 1395.011661 1108.385081 1355.927665 1.079806373 0.992003141 0.83341661 0.975752882 1.164860455 1.239828687 1.209410252 1.028824543 0.817436733 1 10.4050645 -4.977024352 13.2772857 1.038484237 1.162976334 0.008170205 0.135761201 2611491.973 42681924.53 0.037820593 6458650.639 1.05E-05 4.977024352 0.124492097 ALIEVLQPLIAEHQAR ddPTM_K562_Paclitaxel_30min_R1 1 ALIEVLQPLIAEHQAR 16 0 P23381-2;P23381 P23381-2 WARS "Tryptophan--tRNA ligase, cytoplasmic;T1-TrpRS;T2-TrpRS" 0 107.69 0.0027989 3949200 1232.8 1714.7 1747.8 1786.6 1381 1212.4 1397.1 2017.9 1496.5 1839.9 FALSE TRUE 1250.063004 1901.916745 1306.546273 1672.015473 1569.115581 1427.402117 1662.192432 1846.4668 1640.245512 1464.92737 0.853327632 1.298301051 0.891884676 1.141364075 1.071121758 0.974384223 1.134658595 1.260449383 1.11967702 1 10.51661342 -7.930631375 9.612673761 1.153486915 1.049910957 0.086521902 0.132656425 0.729645809 94.88819951 0.051772074 0.034878482 1.17E-08 7.930631375 -0.103575958 ALINS(ph)MDQNMFR ddPTM_K562_Paclitaxel_30min_R1 1 ALINSMDQNMFR 12 0 A0A087X0I9;Q04759-3;Q04759-2;Q04759 A0A087X0I9 PRKCQ Protein kinase C;Protein kinase C theta type 1 ALINS(1)MDQNMFR 184 0.00051858 40000000 2116.2 1914.5 2249.2 2335.3 1830.3 1793.3 2101.1 2452.6 2168.6 2683.8 TRUE FALSE 2145.833329 2123.531584 1681.361642 2185.52431 2079.617847 2111.316576 2499.772757 2244.236321 2376.90372 2136.840087 1.004208664 0.993771877 0.786844862 1.022783279 0.973221094 0.988055488 1.169845498 1.050259369 1.112345156 1 11.06126323 -7.587711703 7.192324286 1.087116581 0.955232851 0.403626833 0.073196505 0.223054779 20.49871858 0.028048677 0.021681768 2.58E-08 7.587711703 -0.131883729 ALIQTCLNSPDS(ph)PPR ddPTM_K562_Paclitaxel_30min_R1 1 ALIQTCLNSPDSPPR 15 0 P11831 P11831 SRF Serum response factor 1 ALIQTCLNS(0.004)PDS(0.996)PPR 95.347 0.0083542 5913400 919.31 908.2 1148 811.35 871.43 766.56 839.24 1127.4 1205.2 1177 TRUE FALSE 932.1831763 1007.360347 858.1732017 759.3136425 990.1335194 902.498653 998.4814089 1031.620333 1320.964845 937.1267539 0.99472475 1.074945671 0.915749335 0.810257139 1.056563069 0.963048648 1.065471031 1.100833296 1.409590367 1 9.872100387 -8.183677166 2.057335672 1.205471688 0.968935446 0.370838076 0.117710485 0.338183008 2.718887675 0.077066732 0.034139696 6.55E-09 8.183677166 -0.236536242 ALIQTCLNSPDS(ph)PPRSDPTTDQR ddPTM_K562_Paclitaxel_30min_R1 2 ALIQTCLNSPDSPPRSDPTTDQR 23 1 P11831 P11831 SRF Serum response factor 1 ALIQTCLNS(0.001)PDS(0.975)PPRS(0.016)DPT(0.004)T(0.004)DQR;ALIQTCLNS(0.002)PDS(0.795)PPRS(0.194)DPT(0.005)T(0.003)DQR 77.631 0.00064484 319950000 2320.7 2426.8 3114.2 2649.1 2303 2233.21 2401.6 2685.6 2535.1 2839.6 TRUE FALSE 2353.19696 2691.766231 2327.981694 2479.198583 2616.70759 2629.238438 2857.291063 2457.441517 2778.607682 2260.887961 1.040828648 1.190579222 1.029675833 1.096559682 1.157380478 1.162922924 1.263791533 1.086936442 1.228989552 1 11.14267379 -6.759301203 5.672298104 1.160988706 1.091919102 0.114129452 0.079258635 0.316263599 33.87215834 0.02283693 0.027864322 1.74E-07 6.759301203 -0.069069604 ALIQTCLNSPDSPPRS(ph)DPTTDQR ddPTM_K562_Paclitaxel_30min_R1 2 ALIQTCLNSPDSPPRSDPTTDQR 23 1 P11831 P11831 SRF Serum response factor 1 ALIQTCLNS(0.001)PDS(0.006)PPRS(0.909)DPT(0.042)T(0.042)DQR;ALIQTCLNS(0.002)PDS(0.052)PPRS(0.774)DPT(0.069)T(0.103)DQR 97.689 0.00011816 282460000 1867.73 1306 1931.67 1731.6 1365.44 1558.47 1589.74 1720.36 1637.03 1836.14 TRUE FALSE 1893.883982 1448.593497 1443.996018 1620.542926 1551.436045 1834.842772 1891.384866 1574.20468 1794.274046 1461.93366 1.295465064 0.990874987 0.987730194 1.108492793 1.06122192 1.255079367 1.293755604 1.076796248 1.227329321 1 10.51366213 -7.240561396 24.07447385 1.183089598 1.078802925 0.107529352 0.113298437 935.1735812 1078351.684 0.036720874 0.036673799 5.75E-08 7.240561396 -0.104286673 ALLEQT(ph)LQR ddPTM_K562_Paclitaxel_30min_R1 1 ALLEQTLQR 9 0 Q9NRC6 Q9NRC6 SPTBN5 "Spectrin beta chain, non-erythrocytic 5" 1 ALLEQT(1)LQR 100.48 0.026126 6797600 1168 1144.7 1195.5 1346.1 1097.4 1214 1207.2 1407.9 1448.3 1284.4 TRUE FALSE 1184.355604 1269.682217 893.6812392 1259.767171 1246.884459 1429.285855 1436.259898 1288.290107 1587.415686 1022.638575 1.158137032 1.241574734 0.873897446 1.231879182 1.21928166 1.39764516 1.404464816 1.259770694 1.552274406 1 9.998080637 -6.815568221 2.237273605 1.340661834 1.106272949 0.247558598 0.161879079 0.378894832 3.889281002 0.052555753 0.064911852 1.53E-07 6.815568221 -0.234388884 ALLETAS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 ALLETASPR 9 0 Q96BT3;H3BUW2;H3BTR4;Q96BT3-2;H3BMP6;H3BQS6;H3BN05;H3BTS2;H3BQJ0;I3L4F8;Q96BT3-3 Q96BT3 CENPT Centromere protein T 1 ALLETAS(1)PR;ALLETAS(1)PR;ALLETAS(1)PR;ALLETAS(1)PR 137.46 0.00088411 160137000 9790.9 9597.2 12201.5 10681 9175.4 9644.4 9692.2 11690.2 8575.6 11786.3 TRUE FALSE 9928.002808 10645.05475 9121.080419 9995.968466 10425.24482 11354.69893 11531.24435 10697.04454 9399.324697 9384.24559 1.057943626 1.134353811 0.971956705 1.065186154 1.110930519 1.209974613 1.228787572 1.139893925 1.001606853 1 13.19602505 -6.823535022 4.135487852 1.134233137 1.056289154 0.090112739 0.079806754 0.413153832 14.11515951 0.025945972 0.030508098 1.50E-07 6.823535022 -0.077943984 ALLFIPR ddPTM_K562_Paclitaxel_30min_R1 2 ALLFIPR 7 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ; 130.84 0.00065788 21675000 4950.2 5090.1 5164 4930.6 4450.9 4345.8 5763.3 6205.1 4746.8 6647.4 FALSE TRUE 5019.518073 5645.854332 3860.284332 4614.373385 5057.187934 5116.466612 6856.856089 5677.938024 5202.751349 5292.656231 0.948392991 1.066733618 0.729366156 0.87184453 0.955510374 0.966710549 1.295541556 1.072795545 0.983013278 1 12.36977624 -7.5393257 24.99369579 1.099221385 0.915285384 0.349171933 0.111665993 269.308308 409252.061 0.043919742 0.034029055 2.89E-08 7.5393257 -0.183936 ALLQSS(ph)ASR ddPTM_K562_Paclitaxel_30min_R1 2 ALLQSSASR 9 0 Q9UQ80;Q9UQ80-2 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 1 ALLQS(0.008)S(0.992)ASR;ALLQS(0.224)S(0.776)ASR 120.63 0.0026833 96281000 7755.1 6694.9 7831.7 6930 5856.9 6311.5 6559.5 8583.8 7492.1 9151.6 TRUE FALSE 7863.695327 7425.871823 5854.490474 6485.540818 6654.708938 7430.755907 7804.130882 7854.552612 8211.749681 7286.498897 1.079214509 1.019127557 0.803470989 0.890076415 0.913293069 1.01979785 1.071039877 1.077959761 1.126981531 1 12.83101006 -7.484023623 3.123599946 1.074818137 0.935250316 0.392271182 0.07497916 0.275592589 5.419761005 0.032054947 0.026169477 3.28E-08 7.484023623 -0.13956782 ALLS(ph)PFSTPVR ddPTM_K562_Paclitaxel_30min_R1 1 ALLSPFSTPVR 11 0 A0A2R8YCL1;Q13322-3;Q13322-2;Q13322-4;Q13322 A0A2R8YCL1 GRB10 Growth factor receptor-bound protein 10 1 ALLS(0.979)PFS(0.021)TPVR 150.09 0.00043476 17473000 2103.9 1847.9 2680.7 2155.3 2066.6 1785.5 1476.7 1831.4 2329.3 2149.6 TRUE FALSE 2133.361091 2049.659971 2003.924131 2017.068705 2348.105908 2102.133355 1756.896116 1675.811139 2553.039673 1711.51034 1.246478646 1.197573817 1.170851314 1.178531416 1.371949589 1.228232927 1.026517968 0.979141697 1.491688138 1 10.74105429 -7.645786515 11.93855243 1.122652997 1.232137105 0.118175092 0.144446118 0.9533004 95.08848017 0.054351107 0.042086304 2.26E-08 7.645786515 0.109484108 ALNGAEPNY(ph)HSLPSAR ddPTM_K562_Paclitaxel_30min_R1 1 ALNGAEPNYHSLPSAR 16 0 F5GX19;F5H3Y3;Q6IAA8;H0YFI1;F5H479 F5GX19 LAMTOR1 Ragulator complex protein LAMTOR1 1 ALNGAEPNY(0.996)HS(0.004)LPSAR 166.62 6.20E-53 0 614.18 651.61 794.87 575.74 569.27 520.43 589.79 674.41 775.76 739.25 TRUE FALSE 622.7804149 722.7549834 594.1952377 538.8146133 646.8142118 612.7209533 701.6995736 617.114661 850.2752142 588.5904442 1.058087879 1.227942095 1.0095224 0.915432146 1.098920681 1.040997113 1.192169497 1.048461909 1.444595682 1 9.20112031 -7.761881061 24.99997657 1.17534528 1.05929655 0.149687966 0.131585088 23.38715308 1323604.667 0.051712307 0.037283132 1.73E-08 7.761881061 -0.11604873 ALNHS(ph)VEDIEPDLLTPR ddPTM_K562_Paclitaxel_30min_R1 1 ALNHSVEDIEPDLLTPR 17 0 Q8IWR0;I3L2K5 Q8IWR0 ZC3H7A Zinc finger CCCH domain-containing protein 7A 1 ALNHS(1)VEDIEPDLLTPR 69.259 0.024741 4477700 681.25 567.53 780.09 672.5 488.42 545.56 651.11 840.33 526.43 683.33 TRUE FALSE 690.7896018 629.4948447 583.1466315 629.36886 554.951073 642.307406 774.6547235 768.9387213 576.9959537 544.0669709 1.269677519 1.157017203 1.071828769 1.156785642 1.020005078 1.180566806 1.423822369 1.413316306 1.060523767 1 9.087640438 -7.53200828 24.98958905 1.265049496 1.130607294 0.053534852 0.139887441 370.0099475 1012789.357 0.052457057 0.040688144 2.94E-08 7.53200828 -0.134442202 ALNTLSS(ph)PGQSSFSHGTR ddPTM_K562_Paclitaxel_30min_R1 2 ALNTLSSPGQSSFSHGTR 18 0 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 ALNTLS(0.022)S(0.978)PGQSSFSHGTR;ALNTLS(0.012)S(0.988)PGQSSFSHGTR 128.4 1.35E-06 74013000 7016.2 6641.7 8655.5 7508.3 6335.5 6001 5466.9 7660.4 6891.3 7740.3 TRUE FALSE 7114.448447 7366.863267 6470.311975 7026.751244 7198.502361 7065.193092 6504.215736 7009.601205 7553.240156 6162.822611 1.154413959 1.195371623 1.049894242 1.14018392 1.168052825 1.146421622 1.055395579 1.137401098 1.225613754 1 12.58937555 -12.42634797 2.013295117 3.17E-05 1.138557851 0.401045663 0.051740651 790260.2663 63495.8875 3625398.373 0.013287762 3.75E-13 12.42634797 1.138526162 ALPAAHIPAPPHEGS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 ALPAAHIPAPPHEGSPR 17 0 P17029;E9PC66 P17029 ZKSCAN1 Zinc finger protein with KRAB and SCAN domains 1 1 ALPAAHIPAPPHEGS(1)PR 97.713 0.0020135 10911000 605.6 742.25 672.56 737.74 624.63 595.43 624.11 644.72 448.44 986.43 TRUE FALSE 614.0802684 823.2913651 502.7639099 690.4246584 709.7151811 701.0211502 742.5316144 589.9470118 491.5146657 785.3950245 0.781874406 1.048251312 0.64014145 0.879079491 0.903641045 0.892571417 0.945424393 0.751146867 0.62581841 1 9.617274648 -11.13662167 4.353366934 1.000025839 0.837179481 0.138262883 0.126280262 35550765.53 45472328.08 7549.50686 0.030411979 7.30E-12 11.13662167 -0.162846358 ALPLS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 ALPLSPR 7 0 J3KTI7;J3QR52;J3QLN7;Q99741 J3KTI7 CDC6 Cell division control protein 6 homolog 1 ALPLS(1)PR 88.177 0.022973 218640000 2680.8 2752.1 3346.4 3416 2220.9 2592.7 2455.3 2881.5 2200.2 2938 TRUE FALSE 2718.339471 3052.583585 2501.559932 3196.913049 2523.42418 3052.478942 2921.180357 2636.698589 2411.539041 2339.233987 1.162063943 1.304950083 1.069392778 1.366649539 1.078739533 1.304905349 1.248776468 1.127163252 1.030909714 1 11.19182046 -8.610486123 2.555512295 1.006850974 1.219992575 0.443479667 0.091329146 0.249844971 3.04462674 0.072683751 0.022693514 2.45E-09 8.610486123 0.213141601 ALPQT(ph)PRPR ddPTM_K562_Paclitaxel_30min_R1 1 ALPQTPRPR 9 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 ALPQT(1)PRPR 112.64 0.027852 2760200000 1513.2 1526 1994.4 1750.4 1388.7 1300 1603.2 2003.3 1630.5 2055.5 TRUE FALSE 1534.389469 1692.613841 1490.889054 1638.137179 1577.864451 1530.536747 1907.398831 1833.107161 1787.11681 1636.587972 0.93755392 1.034233338 0.910973977 1.000946608 0.964118323 0.935199802 1.16547284 1.120078598 1.091977236 1 10.67647544 -7.753780361 24.99999946 1.104388723 0.966334087 0.611524355 0.050699257 104.7277029 341845.4143 0.018587047 0.014116967 1.76E-08 7.753780361 -0.138054636 ALPSLNTGSS(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 1 ALPSLNTGSSSPR 13 0 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 ALPSLNTGS(0.059)S(0.663)S(0.277)PR 131.08 0.00037012 409690000 2771.9 2821.1 3000.3 2598.1 2658.2 2445.6 2625.9 3034.8 1877.5 3303.6 TRUE FALSE 2810.715152 3129.117238 2242.837158 2431.469495 3020.291844 2879.292822 3124.150817 2776.974797 2057.842264 2630.324507 1.068581137 1.189631633 0.852684584 0.924399057 1.148258261 1.09465308 1.187743493 1.055753688 0.782352998 1 11.36102508 -8.677838938 9.222587361 0.891908145 1.065853699 0.27637344 0.112693274 0.371534406 36.77440243 0.080165754 0.030086263 2.10E-09 8.677838938 0.173945554 ALPSLNTGSSS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 ALPSLNTGSSSPR 13 0 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 ALPSLNTGS(0.005)S(0.009)S(0.985)PR;ALPSLNT(0.026)GS(0.06)S(0.206)S(0.708)PR;ALPSLNTGS(0.001)S(0.13)S(0.869)PR 185.66 3.58E-05 3800140000 9139.4 9208.3 11317.2 9729.7 9202.1 7841.1 9344.3 10690 7172.2 11309.2 TRUE FALSE 9267.379797 10213.69333 8460.032891 9105.680591 10455.58181 9231.60899 11117.33214 9781.817775 7861.121856 9004.378832 1.029208119 1.134302935 0.93954653 1.011250277 1.161166362 1.025235517 1.23465842 1.086340097 0.873033221 1 13.13641104 -8.746899201 24.89729758 0.936516623 1.07904285 0.308222734 0.084594022 236.3165861 404651.9228 0.05834807 0.021834912 1.79E-09 8.746899201 0.142526227 ALPTSKPEGSLHSS(ph)PVGPSSSK ddPTM_K562_Paclitaxel_30min_R1 1 ALPTSKPEGSLHSSPVGPSSSK 22 1 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 ALPTSKPEGSLHS(0.159)S(0.841)PVGPSSSK 83.251 0.00066307 71229000 5582 4854.7 10703 6864.2 4953.2 4270.2 4241.8 6518.8 5716.4 8687.9 TRUE FALSE 5660.165222 5384.752564 8000.895277 6423.960935 5627.909698 5027.460013 5046.659406 5964.987251 6265.485762 6917.301211 0.818262072 0.778447027 1.156649831 0.928680238 0.813599051 0.726795012 0.729570573 0.862328684 0.905770267 1 12.75599356 -6.75924369 24.73890869 0.821644242 0.927229619 0.085606608 0.120302858 106.3888506 1198670.506 0.037851465 0.046480582 1.74E-07 6.75924369 0.105585376 ALS(ph)DVTDEEEVQVDPR ddPTM_K562_Paclitaxel_30min_R1 1 ALSDVTDEEEVQVDPR 16 0 Q16659 Q16659 MAPK6 Mitogen-activated protein kinase 6 1 ALS(0.749)DVT(0.251)DEEEVQVDPR 78.508 0.025468 12019000 683.15 557.14 966.42 930.59 821.98 587.89 575.27 848.38 510.73 758.51 TRUE FALSE 692.7162077 617.9704293 722.4353185 870.9061226 933.9475922 692.1440371 684.4244794 776.3048236 559.7878985 603.9252456 1.1470231 1.023256494 1.196233017 1.442076033 1.546462247 1.146075681 1.133293374 1.285431979 0.926915877 1 9.238226172 -8.762354848 24.99525357 0.963457821 1.2415651 0.360223415 0.147395635 29.58291376 807494.1828 0.132516768 0.041772179 1.73E-09 8.762354848 0.278107279 ALS(ph)EEKDEEDGENAHPYR ddPTM_K562_Paclitaxel_30min_R1 1 ALSEEKDEEDGENAHPYR 18 1 Q9NSI8;A0A2R8Y4K8;Q9NSI8-3;S6FRS6 Q9NSI8 SAMSN1 SAM domain-containing protein SAMSN-1 1 ALS(1)EEKDEEDGENAHPYR 110.84 0.00033659 20018000 1796.9 1733.7 3611.9 1981.7 1390.6 1269.5 1187.3 1788.1 2036.1 2371.7 TRUE FALSE 1822.062144 1922.991229 2700.031174 1854.602632 1580.023263 1494.628 1412.583977 1636.189744 2231.676503 1888.346238 0.964898336 1.018346736 1.429839041 0.982130604 0.836723283 0.791501034 0.748053481 0.866467023 1.181815314 1 10.8829076 -6.514136975 24.52337779 0.886297959 1.139130731 0.291475064 0.161451104 384.3607401 1078252.226 0.048338493 0.065837674 3.06E-07 6.514136975 0.252832773 ALS(ph)LGTIPSLTR ddPTM_K562_Paclitaxel_30min_R1 2 ALSLGTIPSLTR 12 0 Q5SNT2;H0Y994;H0Y4R5 Q5SNT2 TMEM201 Transmembrane protein 201 1 ALS(0.994)LGT(0.006)IPSLTR;ALS(0.979)LGT(0.02)IPS(0.002)LTR 158.25 0.00096627 39978000 2299 2316.2 2757.6 2129.92 1341.44 1771.39 2235.74 2407.6 1931.53 3042.2 TRUE FALSE 2331.193093 2569.090549 2061.409774 1993.316464 1524.166839 2085.521145 2659.959994 2203.059352 2117.062087 2422.19797 0.962428803 1.060644332 0.851049254 0.822937055 0.629249491 0.861003589 1.098159616 0.909529023 0.874025209 1 11.24210107 -9.770970702 20.02192808 1 0.895283867 0.059200915 0.123614781 0 0 0.131871952 0.031983646 1.69E-10 9.770970702 -0.104716133 ALS(ph)PEGALRR ddPTM_K562_Paclitaxel_30min_R1 1 ALSPEGALRR 10 1 K7EPS7;I3L2Z9;I3L100;I3L2W2;Q96JN8-2;Q96JN8 K7EPS7 NEURL4 Neuralized-like protein 4 1 ALS(1)PEGALRR 76.165 0.026336 11463000 1707.6 1296.8 1768.2 1563 1264.6 1377.9 1520.4 1332.5 1259.1 1583.6 TRUE FALSE 1731.511668 1438.389009 1321.796041 1462.756176 1436.85993 1622.251218 1808.887963 1219.295808 1380.042181 1260.861451 1.373276713 1.140798625 1.048327745 1.160124433 1.139585899 1.286621315 1.434644514 0.967033933 1.094523256 1 10.30019404 -8.308722023 24.99997058 1.023083864 1.212523199 0.403029644 0.113850027 494.6907807 261557.6918 0.066038425 0.031723936 4.91E-09 8.308722023 0.189439334 ALS(ph)PGLEESGLGLLAR ddPTM_K562_Paclitaxel_30min_R1 4 ALSPGLEESGLGLLAR 16 0 H9KVB4;O15417-2;O15417 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR;ALS(1)PGLEESGLGLLAR 249.36 1.14E-63 122624600 4106.63 4117.16 4809.61 4321.81 3444.54 3569.85 3519.7 4074.81 3249.45 4626.49 TRUE FALSE 4164.13549 4566.685452 3595.364471 4044.62845 3913.744665 4202.912774 4187.544701 3728.629456 3561.574191 3683.608798 1.130449979 1.239731389 0.976044056 1.098007055 1.062475653 1.140976962 1.136804946 1.012221889 0.96687091 1 11.84690414 -2 0.110040109 0.940038173 1.599351 0.298276053 0.070137162 147.6389806 1.136535728 0.678711879 14.78274838 0.01 2 0.659312827 ALS(ph)PVIPLIPR ddPTM_K562_Paclitaxel_30min_R1 1 ALSPVIPLIPR 11 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 ALS(1)PVIPLIPR 98.754 0.010474 479730000 2934.2 2794.2 3856 3380.5 2845.2 2606.1 2668.4 4054.7 2910.1 3538.7 TRUE FALSE 2975.287853 3099.280205 2882.50511 3163.689861 3232.76441 3068.255244 3174.71497 3710.227926 3189.628108 2817.510998 1.055998665 1.100006427 1.023067918 1.122866907 1.147383067 1.088994948 1.126779975 1.316845943 1.132072993 1 11.46020553 -6.761385042 1.027424664 1.159194036 1.061836824 0.113814494 0.077748537 0.919848904 2.076000974 0.035373143 0.054494518 1.73E-07 6.761385042 -0.097357212 ALS(ph)PVTSR ddPTM_K562_Paclitaxel_30min_R1 3 ALSPVTSR 8 0 Q96L91-3;Q96L91-5;Q96L91-2;Q96L91;A0A0A0MR72;A0A0A0MR80;Q96L91-4 Q96L91-3 EP400 E1A-binding protein p400 1 ALS(0.998)PVT(0.002)SR;ALS(0.985)PVT(0.014)SR;ALS(0.987)PVT(0.013)SR 109.44 0.0097439 147327000 7363.2 6803.4 8340.4 7573.5 6674.9 6291.7 5981.1 7144.7 6462.9 7540 TRUE FALSE 7466.307517 7546.21822 6234.762867 7087.769608 7584.134387 7407.444655 7115.982502 6537.713139 7083.690422 6003.343861 1.243691464 1.257002496 1.038548351 1.180636954 1.263318338 1.233886452 1.185336483 1.089011939 1.179957468 1 12.55155059 -9.436085282 0.669296499 0.998048525 1.198956825 0.425998201 0.067294313 1.566281995 1.270993373 0.081370873 0.028050081 3.66E-10 9.436085282 0.2009083 ALS(ph)SAGPIPIRPPIVPVK ddPTM_K562_Paclitaxel_30min_R1 1 ALSSAGPIPIRPPIVPVK 18 1 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 ALS(0.962)S(0.038)AGPIPIRPPIVPVK 99.273 0.00077143 6822700 980.98 858.07 1414.4 1114.4 1021.3 918.86 1119 1782.8 1156.3 2571.4 TRUE FALSE 994.7167466 951.7569844 1057.317227 1042.927372 1160.418351 1081.80692 1331.324408 1631.340012 1267.367781 2047.347269 0.485856387 0.464873253 0.516432773 0.509404236 0.566791169 0.528394443 0.650267997 0.796806696 0.619029219 1 10.99954012 -9.3070494 0.267462827 1.105173583 0.421156067 0.875526516 0.056054372 1.029475594 0.190500229 0.231341045 0.104088774 4.93E-10 9.3070494 -0.684017516 ALSAAVADSLTNS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 ALSAAVADSLTNSPR 15 0 Q14687-3;Q14687;Q14687-2;H7C3B5 Q14687-3 GSE1 Genetic suppressor element 1 1 ALSAAVADSLT(0.037)NS(0.963)PR;ALSAAVADS(0.001)LT(0.027)NS(0.972)PR 170.09 7.61E-06 139867000 1783.55 1889.05 2475.5 2304.4 1979.63 1728.63 2276.87 2402.7 1434.77 2957.8 TRUE FALSE 1808.525203 2095.302867 1850.529408 2156.606098 2249.289121 2035.178259 2708.894196 2198.575638 1572.586069 2354.998736 0.767951666 0.889725686 0.785787856 0.915756796 0.955112666 0.864195054 1.150274161 0.933578266 0.667765144 1 11.20151057 -6.364597779 5.449178586 0.933065805 0.82246813 0.161048074 0.116711492 0.441788027 19.06968463 0.033766553 0.050650219 4.32E-07 6.364597779 -0.110597674 ALSAS(ph)HTDLAH ddPTM_K562_Paclitaxel_30min_R1 2 ALSASHTDLAH 11 0 H0YJK1;H0YG16;Q07866-7;Q07866-6;Q07866-4 H0YJK1 KLC1 1 ALS(0.308)AS(0.567)HT(0.125)DLAH;ALS(0.078)AS(0.605)HT(0.317)DLAH 172.56 0.00034625 103550000 6648.4 5917.2 6400.3 5405 5200 4495.2 5006 5993.7 5858.7 6527.4 TRUE FALSE 6741.498112 6563.259907 4784.465107 5058.347492 5908.328037 5292.360604 5955.862367 5484.497773 6421.454312 5197.112297 1.297162295 1.262866671 0.920600679 0.973299633 1.136848253 1.01832716 1.14599455 1.055297146 1.235581212 1 12.34349452 -5.642510991 7.90498383 1.064112004 1.287840892 0.501708254 0.087584992 0.181079714 11.54462691 0.022528184 0.060084004 2.28E-06 5.642510991 0.223728888 ALSASHT(ph)DLAH ddPTM_K562_Paclitaxel_30min_R1 2 ALSASHTDLAH 11 0 H0YJK1;H0YG16;Q07866-7;Q07866-6;Q07866-4 H0YJK1 KLC1 1 ALS(0.001)AS(0.009)HT(0.99)DLAH;ALS(0.001)AS(0.027)HT(0.973)DLAH 227.27 1.34E-21 571060000 8802.4 8080.9 8541.4 8063.5 7481 6705.1 6969.2 8180.6 8796.2 8927.6 TRUE FALSE 8925.660758 8963.19999 6385.017931 7546.343201 8500.038854 7894.155341 8291.569318 7485.606968 9641.114312 7108.15022 1.255693884 1.260975038 0.898267163 1.061646556 1.195815872 1.110578012 1.166487632 1.053101966 1.356346449 1 12.79525846 -7.756766068 24.22011945 1.14840917 1.125710653 0.001291234 0.130707334 808.7001989 4191253.571 0.052112107 0.038939501 1.75E-08 7.756766068 -0.022698517 ALSGGGSVAS(ph)PPPSPAMPK ddPTM_K562_Paclitaxel_30min_R1 2 ALSGGGSVASPPPSPAMPK 19 0 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 ALSGGGS(0.004)VAS(0.996)PPPSPAMPK;ALSGGGSVAS(0.991)PPPS(0.009)PAMPK 190.82 1.55E-16 17664700 3363.5 2743.3 5305.3 4227.2 2649.5 2985.1 2728.1 3610.3 3026.7 4471.7 TRUE FALSE 3410.599377 3042.822771 3965.9114 3956.086312 3010.406756 3514.465572 3245.742733 3303.58248 3317.428059 3560.365085 0.957935295 0.854637853 1.113905823 1.11114625 0.845533164 0.9871082 0.911631997 0.927877451 0.93176626 1 11.79780947 -6.770549531 24.99999681 0.931918467 1.005815676 0.176128583 0.079684769 383.2889138 1051815.517 0.025983618 0.02986874 1.70E-07 6.770549531 0.073897209 ALSGPEPAKDNVEDRT(ph)PEHFALVPLTESQGPPHSGSGSR ddPTM_K562_Paclitaxel_30min_R1 1 ALSGPEPAKDNVEDRTPEHFALVPLTESQGPPHSGSGSR 39 2 F5GXF9;P51825-3;P51825-2;A0A669KBI3;P51825 F5GXF9 AFF1 AF4/FMR2 family member 1 1 ALS(0.031)GPEPAKDNVEDRT(0.902)PEHFALVPLT(0.065)ES(0.002)QGPPHSGSGSR 60.18 4.43E-05 23938000 769.76 633.82 1516.4 766.68 593.12 740 662.98 920.66 915.56 1191.6 TRUE FALSE 780.5390149 703.022611 1133.566065 717.5085763 673.9129856 871.2286099 788.776994 842.4441864 1003.503629 948.7512659 0.822701421 0.740997811 1.194797948 0.756266265 0.71031577 0.9182898 0.831384392 0.887950527 1.057709923 1 9.889886095 -8.675889357 4.949449944 1.028060255 0.856035468 0.221620399 0.129132267 0.313459493 12.80215531 0.097259355 0.033523204 2.11E-09 8.675889357 -0.172024786 ALSGRAS(ph)PVPAPSSGLHAAVR ddPTM_K562_Paclitaxel_30min_R1 1 ALSGRASPVPAPSSGLHAAVR 21 1 Q9P206;Q9P206-3;Q9P206-2 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 1 ALS(0.101)GRAS(0.899)PVPAPSSGLHAAVR 67.532 0.0082256 47092000 772.13 642.15 1086.9 636.19 710.64 577.81 501.56 758.73 641.92 854.22 TRUE FALSE 782.9422022 712.2621086 812.4986524 595.3876209 807.4411992 680.2764906 596.7283917 694.2711507 703.5792842 680.1294951 1.15116637 1.047244846 1.194623462 0.875403324 1.187187447 1.000216129 0.877374671 1.020792593 1.034478418 1 9.409665648 -6.213039466 0.681500685 0.989083798 1.146915055 0.208609258 0.09543686 1.971730357 1.500869829 0.050808578 0.203394282 6.12E-07 6.213039466 0.157831256 ALSQTVPSSGTNGVSLPADCTGAVPAAS(ph)PDTAAWR ddPTM_K562_Paclitaxel_30min_R1 2 ALSQTVPSSGTNGVSLPADCTGAVPAASPDTAAWR 35 0 B7Z7F3;Q9H6Z4-3;Q9H6Z4-2;Q9H6Z4;K7EN31 B7Z7F3 RANBP3 Ran-binding protein 3 1 ALSQTVPSSGTNGVSLPADCT(0.012)GAVPAAS(0.96)PDT(0.027)AAWR;ALSQTVPSSGTNGVS(0.003)LPADCT(0.03)GAVPAAS(0.954)PDT(0.013)AAWR 141.68 5.76E-32 101824000 5296.7 5665.1 6413.4 6363.9 5501.1 5186.2 5259 6724.4 6342.5 7376 TRUE FALSE 5370.870142 6283.634776 4794.25785 5955.747938 6250.442954 6105.899752 6256.867796 6153.120248 6951.725464 5872.767151 0.914538241 1.069961504 0.816354152 1.014129759 1.064309685 1.039697232 1.06540369 1.047737819 1.183722304 1 12.51982472 -6.513123181 15.39199839 1.065180232 0.941916635 0.403723752 0.072226116 3.099875387 4888.824911 0.020100024 0.027719108 3.07E-07 6.513123181 -0.123263597 ALSS(ph)SVIR ddPTM_K562_Paclitaxel_30min_R1 1 ALSSSVIR 8 0 Q8NEJ9-2;Q8NEJ9;H0YJ17 Q8NEJ9-2 NGDN Neuroguidin 1 ALS(0.018)S(0.491)S(0.491)VIR 111.06 0.0085375 7164400 2250.6 2037.2 2365.9 2355.3 2222.9 1879.2 2276.6 2066.6 2352.6 2128.1 TRUE FALSE 2282.115344 2259.628385 1768.599284 2204.2416 2525.696614 2212.449735 2708.572965 1891.029431 2578.577742 1694.392052 1.346863815 1.333592413 1.043795786 1.300904119 1.490621141 1.305748414 1.598551505 1.116051877 1.521830641 1 10.72655201 -4.131142815 2.716824497 1.313101104 9.781369989 0.001673775 0.191458556 7323.115922 253.7699049 0.047511252 382036.4566 7.39E-05 4.131142815 8.468268885 ALSSGGSIT(ph)SPPLSPALPK ddPTM_K562_Paclitaxel_30min_R1 1 ALSSGGSITSPPLSPALPK 19 0 I1E4Y6;Q6Y7W6;Q6Y7W6-4;Q6Y7W6-5;E7ESB6;C9JHW1;C9JW88;F8WCD5;C9JPV7;C9JXQ0;C9J0V6;C9JHT0;C9JRZ2;Q6Y7W6-3 I1E4Y6;Q6Y7W6-3 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 ALSSGGS(0.126)IT(0.821)S(0.052)PPLSPALPK 151.44 1.63E-11 212420000 3890 3489.8 6303.6 4610.7 3305.6 2964.4 3413 3912.8 4153.6 5050 TRUE FALSE 3944.472002 3870.828166 4712.178218 4314.990339 3755.878684 3490.094718 4060.598933 3580.383217 4552.571839 4020.807228 0.98101495 0.962699266 1.171948306 1.073165187 0.934110608 0.868008467 1.009896447 0.890463784 1.132253197 1 11.97326945 -6.758849095 24.99913762 0.963628308 1.050080771 0.146763094 0.086634694 122.2167768 1179519.812 0.026392181 0.032515598 1.74E-07 6.758849095 0.086452463 ALSSGGSITS(ph)PPLSPALPK ddPTM_K562_Paclitaxel_30min_R1 1 ALSSGGSITSPPLSPALPK 19 0 I1E4Y6;Q6Y7W6;Q6Y7W6-4;Q6Y7W6-5;E7ESB6;C9JHW1;C9JW88;F8WCD5;C9JPV7;C9JXQ0;C9J0V6;C9JHT0;C9JRZ2;Q6Y7W6-3 I1E4Y6;Q6Y7W6-3 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 ALSSGGS(0.002)IT(0.048)S(0.949)PPLS(0.001)PALPK 117.2 0.00013282 231680000 5781.4 4673.3 8895.4 6464.3 4490.5 3807 4507.4 6531 5868.1 7368.4 TRUE FALSE 5862.357437 5183.546698 6649.646253 6049.708731 5102.182125 4482.117997 5362.65562 5976.150785 6431.757224 5866.716035 0.999257063 0.883551661 1.133452891 1.031191674 0.869682816 0.763990957 0.914081334 1.018653493 1.096313029 1 12.51833745 -8.420635845 4.79421536 1.050973709 0.941490335 0.174838672 0.096832409 0.422883181 15.29929583 0.063150068 0.028470906 3.80E-09 8.420635845 -0.109483373 ALSSLHGDDQDS(ph)EDEVLTIPEVK ddPTM_K562_Paclitaxel_30min_R1 5 ALSSLHGDDQDSEDEVLTIPEVK 23 0 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 1 ALSSLHGDDQDS(1)EDEVLTIPEVK;ALSSLHGDDQDS(1)EDEVLTIPEVK;ALSSLHGDDQDS(0.999)EDEVLT(0.001)IPEVK;ALSSLHGDDQDS(1)EDEVLTIPEVK;ALSSLHGDDQDS(1)EDEVLTIPEVK 156.2 1.81E-18 928938000 26874.6 22149.3 44145.4 28757.8 22386.12 20348.2 18109.4 26802.3 29971.9 34787.4 TRUE FALSE 27250.92732 24567.63548 33000.34779 26913.40342 25435.48854 23956.66757 21545.56411 24525.27732 32850.83491 27697.70878 0.983869371 0.886991616 1.191446846 0.971683385 0.918324643 0.864933188 0.777882542 0.885462314 1.186048823 1 14.75747902 -3.330979137 9.322139941 0.958240589 1.172326729 0 0.127304679 0 0 0.030192187 0 0.000466682 3.330979137 0.21408614 ALTQPS(ph)PVSTPSSVQFFLQEDDSADR ddPTM_K562_Paclitaxel_30min_R1 1 ALTQPSPVSTPSSVQFFLQEDDSADR 26 0 P04920-2;P04920-3;P04920;C9J9M9 P04920-2 SLC4A2 Anion exchange protein 2 1 ALT(0.009)QPS(0.89)PVS(0.083)T(0.018)PSSVQFFLQEDDSADR 141.13 5.83E-20 18009000 1652.6 1940.3 2799.7 2274.3 2030.8 1737.7 1737.4 2342.4 1628 2615 TRUE FALSE 1675.741499 2152.148516 2092.881109 2128.436577 2307.429342 2045.856696 2067.06258 2143.398499 1784.376674 2082.061565 0.804847238 1.033662286 1.005196553 1.022273603 1.10824261 0.982611048 0.99279609 1.029459712 0.857023973 1 11.02379701 -5.256851708 24.76826912 1.007324291 0.804847144 0.502215287 0.05921303 344.4462919 1859547.672 0.014567347 0.114000176 5.54E-06 5.256851708 -0.202477147 ALTQPS(ph)PVSTPSSVQFFLQEDDSADRKAER ddPTM_K562_Paclitaxel_30min_R1 1 ALTQPSPVSTPSSVQFFLQEDDSADRKAER 30 2 P04920-2;P04920-3;P04920;C9J9M9 P04920-2 SLC4A2 Anion exchange protein 2 1 ALT(0.022)QPS(0.954)PVS(0.016)T(0.005)PS(0.002)S(0.001)VQFFLQEDDSADRKAER 55.051 0.0020313 11301000 914.3 771.76 1817.9 969.21 780.51 868.74 713.74 1362.8 1369.3 1185.1 TRUE FALSE 927.1030209 856.0233667 1358.948661 907.0492086 886.8286761 1022.798841 849.168439 1247.021634 1500.827383 943.5759695 0.982542001 0.90721192 1.440211181 0.961289009 0.939859328 1.083960247 0.899947081 1.321591132 1.590573978 1 9.881994867 -8.326616856 8.175877197 1.34415198 1.037757184 0.276040094 0.199547473 0.419873015 48.53494394 0.106998552 0.051172357 4.71E-09 8.326616856 -0.306394796 ALTQPSPVS(ph)TPSSVQFFLQEDDSADR ddPTM_K562_Paclitaxel_30min_R1 1 ALTQPSPVSTPSSVQFFLQEDDSADR 26 0 P04920-2;P04920-3;P04920;C9J9M9 P04920-2 SLC4A2 Anion exchange protein 2 1 ALTQPS(0.181)PVS(0.361)T(0.361)PS(0.091)S(0.005)VQFFLQEDDSADR 86.08 5.51E-05 16390000 1679 1487.8 2009.7 1536.9 1297.4 1386.4 1529.3 1927.1 991.38 1861.2 TRUE FALSE 1702.51118 1650.243035 1502.326379 1438.330113 1474.127845 1632.258574 1819.476692 1763.380826 1086.606479 1481.886418 1.14888102 1.113609663 1.013793204 0.970607528 0.994764394 1.101473469 1.227811166 1.189956804 0.73325895 1 10.53321916 -8.453895586 0.01180362 5.79E-07 2.083360966 0.063166798 0.130276955 2846.416724 34.20683268 3017.539852 3013.280167 3.52E-09 8.453895586 2.083360387 ALVEFESNPEETREPGS(ph)PPSVQR ddPTM_K562_Paclitaxel_30min_R1 4 ALVEFESNPEETREPGSPPSVQR 23 1 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 ALVEFES(0.001)NPEET(0.036)REPGS(0.518)PPS(0.445)VQR;ALVEFES(0.026)NPEET(0.306)REPGS(0.485)PPS(0.183)VQR;ALVEFES(0.001)NPEET(0.045)REPGS(0.953)PPS(0.001)VQR;ALVEFESNPEET(0.005)REPGS(0.989)PPS(0.006)VQR 82.367 0.00043452 6957826000 4321.87 4281.98 5238.6 4808.7 4319.06 4299.77 4414.9 4654.41 4360.69 5504.5 TRUE FALSE 4382.389514 4749.501057 3916.05064 4500.291505 4907.389094 5062.273838 5252.604228 4258.988819 4779.553759 4382.679879 0.999933747 1.083697917 0.893528788 1.02683555 1.119723373 1.155063563 1.198491419 0.9717773 1.090555069 1 12.09759759 -6.614852377 5.386957421 1.096050307 0.995237387 0.250097542 0.075849228 0.287429722 13.29940937 0.023229358 0.030215655 2.43E-07 6.614852377 -0.100812919 ALVHERDEAAYGELR ddPTM_K562_Paclitaxel_30min_R1 2 ALVHERDEAAYGELR 15 1 H0YM70;A0A087X1Z3;Q9UL46 H0YM70 PSME2 Proteasome activator complex subunit 2 0 ; 115.83 0.001381 48126000 5930.6 6088.8 7231.9 6759.4 5686.8 5941.8 5967.8 6148.5 6349.9 7126.6 FALSE TRUE 6013.646697 6753.595775 5406.117402 6325.882338 6461.438438 6995.494803 7100.158896 5626.146547 6959.836267 5674.195008 1.059823762 1.190229762 0.952754954 1.114851063 1.13874099 1.232861189 1.251306817 0.99153211 1.226576855 1 12.47020002 -6.517693704 21.51626335 1.147834023 1.072188514 0.092844055 0.099426123 84.6624984 351325.7241 0.028476589 0.038067405 3.04E-07 6.517693704 -0.075645509 ALVHQLS(ph)NESR ddPTM_K562_Paclitaxel_30min_R1 1 ALVHQLSNESR 11 0 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3;Q9H4L5-6;Q9H4L5-2;Q9H4L5-8;Q9H4L5-4 Q9H4L5-5;Q9H4L5-6 OSBPL3 Oxysterol-binding protein-related protein 3 1 ALVHQLS(0.955)NES(0.045)R 101.32 0.0065121 16006000 893.44 908.18 1209.3 1062.3 1054.9 724.9 618.14 1252.4 775.14 868.78 TRUE FALSE 905.9509165 1007.338164 903.9972586 994.1688327 1198.59524 853.4508369 735.4288381 1146.000803 849.5956604 691.7221591 1.309703476 1.456275689 1.306879137 1.43723722 1.73276976 1.233805836 1.06318531 1.656735711 1.228232534 1 9.434048863 ALVLDCHYPEDEVGQEDEAES(ph)DIFSIR ddPTM_K562_Paclitaxel_30min_R1 2 ALVLDCHYPEDEVGQEDEAESDIFSIR 27 0 I3L3Q7;I3L3B0;Q07021 I3L3Q7 C1QBP "Complement component 1 Q subcomponent-binding protein, mitochondrial" 1 ALVLDCHY(0.002)PEDEVGQEDEAES(0.945)DIFS(0.054)IR;ALVLDCHYPEDEVGQEDEAES(0.964)DIFS(0.036)IR 147.21 1.88E-31 25464000 2367.4 2268 2883.5 2457.24 2189.58 2192.5 2423.1 2698.6 2220.7 2883.3 TRUE FALSE 2400.550904 2515.62791 2155.524762 2299.643625 2487.837866 2581.309091 2882.870576 2469.337086 2434.008157 2295.681877 1.045680993 1.095808585 0.938947501 1.001725739 1.08370323 1.124419335 1.255779646 1.075644283 1.060254986 1 11.16470702 -6.929560524 4.191125296 1.11650005 1.020559904 0.220443215 0.071593874 0.304630763 10.54446552 0.023814559 0.02698517 1.18E-07 6.929560524 -0.095940146 ALVLDCHYPEDEVGQEDEAESDIFSIR ddPTM_K562_Paclitaxel_30min_R1 1 ALVLDCHYPEDEVGQEDEAESDIFSIR 27 0 I3L3Q7;I3L3B0;Q07021 I3L3Q7 C1QBP "Complement component 1 Q subcomponent-binding protein, mitochondrial" 0 63.63 0.0038967 7446700 177.73 158.56 332.46 418.78 215.27 208.99 307.85 385.65 275.01 409.84 FALSE TRUE 180.2187683 175.872117 248.5263612 391.9213252 244.5934186 246.0514421 366.2629304 352.8866253 301.4259393 326.314383 0.552285703 0.538965262 0.761616325 1.201054399 0.749563707 0.754031863 1.122423495 1.081431416 0.923728634 1 8.350118769 -5.968961554 4.217011448 0.968685124 0.554301772 0.611276809 0.137731823 0.141752263 5.744358566 0.039050725 0.083288085 1.07E-06 5.968961554 -0.414383353 ALVVPEPEPDS(ph)DSNQER ddPTM_K562_Paclitaxel_30min_R1 3 ALVVPEPEPDSDSNQER 17 0 C9J0A5;C9JXC9;Q5VTR2 C9J0A5 RNF20 E3 ubiquitin-protein ligase BRE1A 1 ALVVPEPEPDS(0.949)DS(0.051)NQER;ALVVPEPEPDS(0.992)DS(0.008)NQER;ALVVPEPEPDS(0.698)DS(0.302)NQER 176.17 1.27E-09 39792000 9212 9053.6 11133.2 9278.5 8855.2 8792.4 8698 9714.3 7765.7 11260.5 TRUE FALSE 9340.996421 10042.10267 8322.485966 8683.418539 10061.42816 10351.60869 10348.40009 8889.00958 8511.630183 8965.603919 1.041870297 1.120069853 0.928268306 0.968525781 1.122225368 1.154591345 1.154233467 0.991456868 0.949364957 1 13.13018505 -8.49610958 23.33887652 0.973258582 1.068168742 0.247092463 0.07209044 470.8218622 410492.9633 0.044241637 0.02112393 3.19E-09 8.49610958 0.09491016 ALVVPEPEPDSDS(ph)NQER ddPTM_K562_Paclitaxel_30min_R1 2 ALVVPEPEPDSDSNQER 17 0 C9J0A5;C9JXC9;Q5VTR2 C9J0A5 RNF20 E3 ubiquitin-protein ligase BRE1A 1 ALVVPEPEPDS(0.064)DS(0.936)NQER;ALVVPEPEPDS(0.23)DS(0.77)NQER 240.66 4.00E-51 150676000 7148.2 6907.5 8505.1 7391.7 6506.1 6115.9 6318.7 7082.8 5166.2 8309.5 TRUE FALSE 7248.296854 7661.68421 6357.882315 6917.629446 7392.340969 7200.468994 7517.640339 6481.071931 5662.436593 6616.019339 1.095567664 1.158050456 0.960983031 1.045587852 1.117339686 1.088338565 1.136278471 0.97960293 0.8558676 1 12.69174774 -8.459518404 5.192083065 0.924025062 1.083037847 0.541065308 0.060553782 0.153283894 8.243438975 0.03609785 0.016171442 3.47E-09 8.459518404 0.159012785 ALYESELADARR ddPTM_K562_Paclitaxel_30min_R1 2 ALYESELADARR 12 1 Q03252 Q03252 LMNB2 Lamin-B2 0 ; 105.4 0.0021343 25245000 2577.9 2662 3423.6 2813 2538.4 2770.4 2416 2689.1 3195.3 3526.8 FALSE TRUE 2613.998554 2952.646162 2559.269837 2632.586771 2884.173055 3261.691542 2874.423388 2460.64417 3502.222842 2808.036224 0.930899157 1.051498601 0.911409125 0.937518807 1.027113906 1.161556077 1.023641847 0.876286477 1.247214267 1 11.45534583 -6.909095826 5.5847266 1.055975033 0.96198395 0.197963126 0.098186024 0.382179337 18.69259834 0.030332767 0.034534148 1.23E-07 6.909095826 -0.093991083 ALYETELADARR ddPTM_K562_Paclitaxel_30min_R1 2 ALYETELADARR 12 1 P20700;E9PBF6;A0A0D9SFE5;A0A0D9SFY5 P20700 LMNB1 Lamin-B1 0 ; 202.03 1.94E-06 48817000 4429.4 4272.6 4999.8 4199.5 3948.5 4119.5 3817.3 4487.8 4625.3 5075.4 FALSE TRUE 4491.425266 4739.096917 3737.538653 3930.162866 4486.352549 4850.035484 4541.612747 4106.533378 5069.580731 4041.030694 1.11145537 1.172744598 0.924897368 0.972564468 1.110200067 1.200197636 1.123874846 1.0162094 1.254526658 1 11.98050759 -6.972729198 24.45739628 1.124161546 1.045336937 0.120796927 0.095001194 365.995591 328235.3256 0.030136133 0.03417017 1.06E-07 6.972729198 -0.078824609 AMDNHS(ph)DS(ph)EEELAAFCPQLDDSTVAR ddPTM_K562_Paclitaxel_30min_R1 2 AMDNHSDSEEELAAFCPQLDDSTVAR 26 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 2 AMDNHS(1)DS(1)EEELAAFCPQLDDSTVAR;AMDNHS(1)DS(1)EEELAAFCPQLDDSTVAR 113.67 1.69E-07 46531000 1155.64 1282.68 1520.64 1336.45 1226.91 1153.37 1027.25 1169.02 1174.66 1657.74 TRUE FALSE 1171.822525 1422.72734 1136.735625 1250.736079 1394.035914 1357.903975 1222.165325 1069.704454 1287.491342 1319.891678 0.887817194 1.077912198 0.861234027 0.947605095 1.056174485 1.028799558 0.925958808 0.810448669 0.975452276 1 10.36620382 -7.976941325 21.63391168 0.909411077 0.978179785 0.066724061 0.079831047 99.64693646 93488.30995 0.032940363 0.022204316 1.05E-08 7.976941325 0.068768708 AMKPPGGESSNLFGS(ph)PEEATPSSRPNR ddPTM_K562_Paclitaxel_30min_R1 2 AMKPPGGESSNLFGSPEEATPSSRPNR 27 2 A6NGP5;Q9H910;Q9H910-3;H3BMV3;H3BMM8;B4E1P3 A6NGP5 HN1L Hematological and neurological expressed 1-like protein 1 AMKPPGGES(0.003)S(0.003)NLFGS(0.993)PEEAT(0.001)PSSRPNR;AMKPPGGES(0.01)S(0.046)NLFGS(0.941)PEEAT(0.002)PSSRPNR 74.838 0.00045625 44036000 2648 2088.37 3688.9 2667.6 1899.79 1878.93 1453.8 2442.63 2167.44 2701.9 TRUE FALSE 2685.08017 2316.385299 2757.591571 2496.512076 2158.573562 2212.131854 1729.650961 2235.113335 2375.632296 2151.251297 1.248148077 1.076761837 1.281854693 1.160493002 1.003403724 1.028300068 0.80402088 1.038982911 1.104302552 1 11.07096035 -6.738008639 3.90456081 0.988455172 1.194341011 0.548080353 0.087288289 0.172227892 5.696062106 0.027635078 0.034601094 1.83E-07 6.738008639 0.205885838 AMLDQLMGTS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 AMLDQLMGTSR 11 0 Q9Y383;V9GZ75;F8WEU3 Q9Y383 LUC7L2;C7orf55-LUC7L2 Putative RNA-binding protein Luc7-like 2 1 AMLDQLMGT(0.091)S(0.909)R;AMLDQLMGT(0.01)S(0.99)R 103.97 0.0074069 291430000 11662.2 10869.5 12359.9 12047.2 11149.7 9059.9 11069.2 13100.9 9846.4 14394.1 TRUE FALSE 11825.50678 12056.26877 9239.49038 11274.54651 12668.47791 10666.54606 13169.52291 11987.89677 10792.19071 11460.57452 1.031842406 1.051977695 0.806197836 0.983768003 1.105396408 0.930716522 1.149115421 1.046011851 0.94167973 1 13.48439175 -6.53522436 24.8943981 1.033353101 0.959333108 0.104603295 0.087231376 446.2854582 899910.5089 0.025913917 0.033477742 2.92E-07 6.53522436 -0.074019993 AMLDSGIYPPGS(ph)PGK ddPTM_K562_Paclitaxel_30min_R1 2 AMLDSGIYPPGSPGK 15 0 O95295 O95295 SNAPIN SNARE-associated protein Snapin 1 AMLDSGIYPPGS(1)PGK;AMLDSGIYPPGS(1)PGK 170.48 5.35E-06 50605000 10265.9 8856.2 16970.2 11924.8 9170.7 8704.7 9646.1 13943.7 12248.2 16964 TRUE FALSE 10409.65427 9823.149866 12685.86313 11159.9967 10419.9046 10248.35632 11476.39712 12759.09565 13424.69434 13506.72749 0.770701436 0.727278304 0.939225518 0.826254673 0.771460342 0.758759391 0.849680067 0.944647448 0.993926497 1 13.72139055 -8.284747947 2.291315485 0.993567073 0.801974167 0.693659361 0.054192778 0.197378225 1.969761958 0.040077909 0.016610747 5.19E-09 8.284747947 -0.191592906 AMS(ph)EVTS(ph)LHEDDWR ddPTM_K562_Paclitaxel_30min_R1 2 AMSEVTSLHEDDWR 14 0 S4R3V8;Q86X29-6;Q86X29-5;Q86X29-2;Q86X29-3;Q86X29-4;Q86X29 S4R3V8 LSR Lipolysis-stimulated lipoprotein receptor 2 AMS(0.998)EVT(0.011)S(0.991)LHEDDWR;AMS(1)EVT(0.025)S(0.975)LHEDDWR 155.57 0.00036746 11352100 3431 3009.6 4866.5 3762.5 3446.7 2927.19 3163.3 4460.2 4449.4 5325.3 TRUE FALSE 3479.044586 3338.198306 3637.891887 3521.19009 3916.198893 3446.286047 3763.519661 4081.27817 4876.78475 4240.000937 0.820529202 0.787310747 0.85799318 0.830469177 0.92363161 0.812803133 0.887622366 0.962565394 1.150184829 1 12.04984887 -8.397469953 2.452208242 1.072820502 0.842556388 0.767409282 0.050656445 0.13462699 1.51761982 0.036092352 0.01363303 4.00E-09 8.397469953 -0.230264113 AMS(ph)EVTSLHEDDWR ddPTM_K562_Paclitaxel_30min_R1 2 AMSEVTSLHEDDWR 14 0 S4R3V8;Q86X29-6;Q86X29-5;Q86X29-2;Q86X29-3;Q86X29-4;Q86X29 S4R3V8 LSR Lipolysis-stimulated lipoprotein receptor 1 AMS(0.992)EVT(0.006)S(0.002)LHEDDWR;AMS(0.999)EVT(0.001)SLHEDDWR 128.82 0.00013852 25694000 2607 2664.4 2926.9 2871.2 2724.1 2514.8 3111.5 3514.8 4072.2 5074.7 TRUE FALSE 2643.506043 2955.308202 2187.967896 2687.054083 3095.168539 2960.76447 3701.890882 3216.195801 4463.353005 4040.473354 0.654256522 0.731426232 0.541512764 0.665034477 0.766041072 0.732776635 0.916202276 0.795994805 1.104660918 1 11.9803086 -7.931208625 0.749409318 1.028757834 0.644472636 0.755355478 0.080081325 0.326816831 0.350936646 0.067672093 0.037697387 1.17E-08 7.931208625 -0.384285198 AMSEVTS(ph)LHEDDWR ddPTM_K562_Paclitaxel_30min_R1 4 AMSEVTSLHEDDWR 14 0 S4R3V8;Q86X29-6;Q86X29-5;Q86X29-2;Q86X29-3;Q86X29-4;Q86X29 S4R3V8 LSR Lipolysis-stimulated lipoprotein receptor 1 AMSEVT(0.062)S(0.938)LHEDDWR;AMSEVT(0.041)S(0.959)LHEDDWR;AMSEVT(0.052)S(0.948)LHEDDWR;AMSEVT(0.043)S(0.957)LHEDDWR 145.61 7.72E-06 240583000 8888 8373.7 9368.6 8685.6 8292.9 8376.8 8337.3 11222.9 10519 12234.9 TRUE FALSE 9012.459422 9287.968884 7003.381061 8128.544491 9422.53338 9862.307864 9919.259151 10269.44459 11529.39695 9741.420664 0.925168898 0.953451165 0.718928101 0.834431113 0.967264807 1.012409607 1.018255909 1.054203996 1.183543689 1 13.24991647 -7.183857948 1.635692691 1.067966261 0.856611358 0.599426374 0.075239266 0.275935977 1.469052704 0.033450108 0.032248729 6.55E-08 7.183857948 -0.211354903 AMSTTSISS(ph)PQPGK ddPTM_K562_Paclitaxel_30min_R1 2 AMSTTSISSPQPGK 14 0 H0Y5J4;Q9UJU6-5;Q9UJU6;B4DDD6;Q9UJU6-4;Q9UJU6-6;Q9UJU6-2;Q9UJU6-3 H0Y5J4 DBNL Drebrin-like protein 1 AMSTTS(0.004)IS(0.137)S(0.859)PQPGK;AMSTTSIS(0.002)S(0.998)PQPGK 233.52 3.52E-35 81487000 8557.7 7226.8 12525.7 9903.9 7257 6212.2 5629.5 7556.9 5215.8 10134.6 TRUE FALSE 8677.534203 8015.846463 9363.432119 9268.708182 8245.526262 7313.846446 6697.668237 6914.894176 5716.800895 8069.162957 1.075394592 0.993392562 1.160396954 1.14865795 1.021856456 0.906394689 0.830032591 0.856953096 0.708475083 1 12.97820331 -7.277562949 2.258057776 0.838267944 1.09155453 0.666975958 0.07917291 0.181301015 1.817212284 0.030763009 0.028060184 5.28E-08 7.277562949 0.253286586 AMT(ph)LSPQEEVAAGQMASSSR ddPTM_K562_Paclitaxel_30min_R1 1 AMTLSPQEEVAAGQMASSSR 20 0 A0A494BZT8;Q9Y6A5 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 AMT(0.99)LS(0.01)PQEEVAAGQMASSSR 166.61 2.44E-12 66145000 1504.2 1414.9 1659.6 1243.9 1386.9 1349.9 1154 1432.8 1244.3 1534.4 TRUE FALSE 1525.263441 1569.383567 1240.613454 1164.121821 1575.81926 1589.285811 1372.965476 1311.074697 1363.820575 1221.688438 1.248488071 1.284602128 1.01549087 0.952879462 1.289869996 1.300892897 1.123826201 1.073166166 1.11634074 1 10.25466069 -8.789924173 1.167701075 1.012272003 1.171430396 0.178819132 0.113338516 0.907066418 2.598650204 0.117821684 0.038433607 1.62E-09 8.789924173 0.159158393 AMTGVEQWPYR ddPTM_K562_Paclitaxel_30min_R1 1 AMTGVEQWPYR 11 0 B4DUR8;P49368-2;P49368 B4DUR8 CCT3 T-complex protein 1 subunit gamma 0 64.42 0.025411 0 518.7 466.44 597.76 591.96 432.69 412.83 502.59 511.99 809.56 614.28 FALSE TRUE 525.9634003 517.3674966 446.848095 553.9943351 491.6297035 486.0396041 597.9538288 468.4932538 887.3218552 489.0893988 1.075393173 1.057817851 0.913632755 1.13270567 1.005193948 0.993764341 1.222585953 0.957888793 1.814232444 1 8.933954384 AMTLS(ph)PQEEVAAGQMASSSR ddPTM_K562_Paclitaxel_30min_R1 9 AMTLSPQEEVAAGQMASSSR 20 0 A0A494BZT8;Q9Y6A5 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 AMT(0.008)LS(0.992)PQEEVAAGQMASSSR;AMT(0.014)LS(0.984)PQEEVAAGQMAS(0.001)SSR;AMT(0.203)LS(0.797)PQEEVAAGQMASSSR;AMTLS(1)PQEEVAAGQMASSSR;AMT(0.004)LS(0.994)PQEEVAAGQMASS(0.001)SR;AMTLS(1)PQEEVAAGQMASSSR;AMT(0.008)LS(0.986)PQEEVAAGQMAS(0.005)SSR;AMT(0.014)LS(0.986)PQEEVAAGQMASSSR;AMT(0.02)LS(0.98)PQEEVAAGQMASSSR 186.89 2.45E-16 812209000 11898.23 11170.48 14224.33 11877.55 10362.23 10461.35 10389.49 12573.53 11438.94 11904.08 TRUE FALSE 12064.84193 12390.11078 10633.22197 11115.7771 11773.74116 12316.52354 12360.84149 11505.33014 12537.7013 9478.021962 1.272928252 1.307246473 1.121881972 1.172795036 1.242215011 1.299482486 1.304158351 1.213895704 1.322818342 1 13.21037029 -11.270238 5.174238402 0.999958451 1.248057056 0.596286719 0.06187794 3.16E-05 4.45E-06 0.063767006 0.015463184 5.37E-12 11.270238 0.248098606 AMTLSPQEEVAAGQMASSS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 AMTLSPQEEVAAGQMASSSR 20 0 A0A494BZT8;Q9Y6A5 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 AMTLS(0.001)PQEEVAAGQMAS(0.079)S(0.053)S(0.866)R 68.845 0.029312 7831900 473.03 310.32 550.82 396.81 304.15 518.58 460.36 428.81 415.49 403.63 TRUE FALSE 479.6538794 344.201787 411.7586785 371.3603827 345.5803793 610.5428818 547.7109068 392.379914 455.399671 321.3699844 1.492528558 1.071045224 1.281260536 1.155554036 1.07533496 1.899813023 1.704300132 1.220960055 1.417057264 1 8.328091379 AMVS(ph)PFHS(ph)PPST(ph)PSSPGVR ddPTM_K562_Paclitaxel_30min_R1 1 AMVSPFHSPPSTPSSPGVR 19 0 Q6JBY9;B7ZKW8;F6T4W9 Q6JBY9 RCSD1 CapZ-interacting protein 3 AMVS(1)PFHS(0.999)PPS(0.195)T(0.652)PS(0.121)S(0.033)PGVR 73.831 0.011939 24833000 793.34 734.56 1354.8 1173.7 883.71 934.09 894.38 1000.4 849.33 1148.8 TRUE FALSE 804.4492077 814.7617449 1012.763984 1098.424135 1004.086263 1099.737746 1064.083936 915.4097757 930.9119414 914.6739294 0.879492879 0.890767429 1.107240462 1.200891487 1.097753233 1.202327639 1.163347836 1.00080449 1.017752788 1 9.837113721 -5.758071918 7.380674045 1.108658484 0.883694514 0.580984651 0.072197923 0.0832268 27.89718147 0.019835658 0.047434058 1.75E-06 5.758071918 -0.224963971 AMVS(ph)PFHS(ph)PPSTPSSPGVR ddPTM_K562_Paclitaxel_30min_R1 1 AMVSPFHSPPSTPSSPGVR 19 0 Q6JBY9;B7ZKW8;F6T4W9 Q6JBY9 RCSD1 CapZ-interacting protein 2 AMVS(1)PFHS(0.999)PPS(0.001)TPSSPGVR 67.194 0.02073 17046000 984.93 831.55 832.35 920.84 661.62 592.17 636.28 867.56 891.69 733.29 TRUE FALSE 998.7220588 922.3414411 622.2129481 861.7814439 751.7438453 697.183035 757.0108084 793.8553629 977.3408087 583.8450955 1.710594242 1.579770813 1.065715809 1.476044674 1.287574138 1.194123305 1.296595303 1.359702032 1.673972799 1 9.189441837 -5.57541614 8.248226408 1.309988959 1.678575983 0.377890954 0.182614843 0.22399249 31.3305314 0.044859797 0.120047513 2.66E-06 5.57541614 0.368587023 AMVS(ph)PFHSPPSTPSSPGVR ddPTM_K562_Paclitaxel_30min_R1 1 AMVSPFHSPPSTPSSPGVR 19 0 Q6JBY9;B7ZKW8;F6T4W9 Q6JBY9 RCSD1 CapZ-interacting protein 1 AMVS(0.8)PFHS(0.184)PPS(0.005)T(0.008)PS(0.002)S(0.001)PGVR 77.644 0.0093223 39623000 1249.9 880.64 1436.1 1462.8 1539.8 1701.4 1465.8 1489.1 1445.8 1690.4 TRUE FALSE 1267.402456 976.7912533 1073.538794 1368.982555 1749.546829 2003.119401 1743.927898 1362.59166 1584.67555 1345.895552 0.941679653 0.725755614 0.797639008 1.017153637 1.29991278 1.488317127 1.295737916 1.012405203 1.177413468 1 10.39435074 -6.511016064 3.391070634 1.229591397 0.815946698 0.597902752 0.14322937 0.16803381 4.045069666 0.046395813 0.066890871 3.08E-07 6.511016064 -0.413644699 AMVSPFHS(ph)PPS(ph)TPSSPGVR ddPTM_K562_Paclitaxel_30min_R1 3 AMVSPFHSPPSTPSSPGVR 19 0 Q6JBY9;B7ZKW8;F6T4W9 Q6JBY9 RCSD1 CapZ-interacting protein 2 AMVS(0.002)PFHS(0.998)PPS(0.933)T(0.063)PS(0.003)S(0.002)PGVR;AMVS(0.002)PFHS(0.998)PPS(0.931)T(0.053)PS(0.008)S(0.007)PGVR;AMVSPFHS(1)PPS(0.521)T(0.418)PS(0.046)S(0.015)PGVR 97.689 0.0021404 57292000 3025.99 3360 4754.3 4144.5 4326.7 3857.5 3196.7 3928.77 3326.25 4566.2 TRUE FALSE 3068.363196 3726.856163 3554.018165 3878.69032 4916.069792 4541.573463 3803.257137 3594.996466 3645.751175 3635.605934 0.843975737 1.025099043 0.977558687 1.066862138 1.352200948 1.249192995 1.04611369 0.988830069 1.002790523 1 11.82798012 -5.43010201 1.222771778 1.108358559 0.794619484 0.293869031 0.115160107 1.573713591 2.527161619 0.040045789 0.580977337 3.71E-06 5.43010201 -0.313739075 AMVSPFHSPPST(ph)PSSPGVR ddPTM_K562_Paclitaxel_30min_R1 1 AMVSPFHSPPSTPSSPGVR 19 0 Q6JBY9;B7ZKW8;F6T4W9 Q6JBY9 RCSD1 CapZ-interacting protein 1 AMVSPFHSPPS(0.149)T(0.447)PS(0.315)S(0.09)PGVR 69.398 0.015555 8248500 919.24 952.76 1057.4 900.31 773.86 822.98 780.1 1020.8 730.87 1100.5 TRUE FALSE 932.1121961 1056.785559 790.4462922 842.5681462 879.2728336 968.9239478 928.1199026 934.0766684 801.0733291 876.2174959 1.063790897 1.20607676 0.902111971 0.961597035 1.003486963 1.105803014 1.059234616 1.066032889 0.91424028 1 9.775145212 -5.751549825 24.99998841 1.008345524 1.134933805 0.369389678 0.069251872 232.0294291 586539.8381 0.018352502 0.047331366 1.77E-06 5.751549825 0.126588281 AMVSPFHSPPSTPS(ph)SPGVR ddPTM_K562_Paclitaxel_30min_R1 1 AMVSPFHSPPSTPSSPGVR 19 0 Q6JBY9;B7ZKW8;F6T4W9 Q6JBY9 RCSD1 CapZ-interacting protein 1 AMVSPFHSPPS(0.029)T(0.183)PS(0.749)S(0.038)PGVR 254.02 7.30E-85 13422000 1185.8 1104.8 1171.6 1534.3 1086 1065.6 951.98 1186.1 1016.7 1262.8 TRUE FALSE 1202.404859 1225.4258 875.8150898 1435.896865 1233.931586 1254.569198 1132.613235 1085.333402 1114.358578 1005.440667 1.195898374 1.218794744 0.871075856 1.428126903 1.227254503 1.247780441 1.126484409 1.079460417 1.108328531 1 9.973612232 -8.013352274 3.762429407 1.072794949 1.196019097 0.17728002 0.13059039 0.46033239 14.23333222 0.063927694 0.037845351 9.70E-09 8.013352274 0.123224148 AMVSPFHSPPSTPSS(ph)PGVR ddPTM_K562_Paclitaxel_30min_R1 1 AMVSPFHSPPSTPSSPGVR 19 0 Q6JBY9;B7ZKW8;F6T4W9 Q6JBY9 RCSD1 CapZ-interacting protein 1 AMVSPFHSPPS(0.033)T(0.197)PS(0.077)S(0.693)PGVR 220.1 1.41E-36 13149000 1264.4 1195.2 815.03 1368.3 1199.1 958.35 918.6 1137.1 1111.1 1315.1 TRUE FALSE 1282.105501 1325.695978 609.2655963 1280.543362 1362.437721 1128.299917 1092.899555 1040.496257 1217.82612 1047.081898 1.224455798 1.266086235 0.58187005 1.222963901 1.30117589 1.077566061 1.043757472 0.993710482 1.16306673 1 10.03215857 -11.31744774 0.01103615 1.29E-05 2.067127398 0.021494134 0.196472708 31427.40015 59.19687782 5960.260187 5146.553344 4.81E-12 11.31744774 2.06711446 ANNSQEPS(ph)PQLASSVASTR ddPTM_K562_Paclitaxel_30min_R1 2 ANNSQEPSPQLASSVASTR 19 0 Q96HC4;H0Y8Y3;Q96HC4-7;Q96HC4-4 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 1 ANNSQEPS(0.999)PQLAS(0.001)SVASTR;ANNSQEPS(1)PQLASSVASTR 233.87 1.76E-46 47482000 4764.2 4697 5850.3 5027.8 4191.8 4313.7 4299.6 5309.5 4112.2 6160.2 TRUE FALSE 4830.913499 5209.834344 4373.319409 4705.339412 4762.794128 5078.674128 5115.426655 4858.424834 4507.195184 4904.747859 0.98494635 1.062202277 0.8916502 0.959343792 0.971057894 1.035460797 1.042954052 0.990555473 0.918945339 1 12.25996326 ANPELCGSLHLNGSPS(ph)SCIASR ddPTM_K562_Paclitaxel_30min_R1 1 ANPELCGSLHLNGSPSSCIASR 22 0 Q9NXR5 Q9NXR5 ANKRD10 Ankyrin repeat domain-containing protein 10 1 ANPELCGSLHLNGS(0.051)PS(0.35)S(0.35)CIAS(0.249)R 66.019 0.016123 0 288.48 366.04 513.43 590.46 477.91 354.88 357.64 511.48 394.1 453.56 TRUE FALSE 292.51961 406.0054851 383.8082465 552.5905384 543.0094331 417.8129852 425.500323 468.0265814 431.9550659 361.124223 0.810024893 1.124282059 1.062815015 1.53019516 1.503663832 1.156978565 1.178265804 1.296026551 1.196139828 1 8.496351385 -5.352340404 1.527811353 1.271573948 0.701648297 0.401508361 0.159941267 0.923492432 2.326241308 0.047207011 0.7533276 4.44E-06 5.352340404 -0.569925651 ANRDQDS(ph)SDDERALEDWVSSETSALPRPR ddPTM_K562_Paclitaxel_30min_R1 1 ANRDQDSSDDERALEDWVSSETSALPRPR 29 3 Q5TAQ8;V9GY54;Q5TAQ9-2;Q5TAQ9 Q5TAQ8 DCAF8 DDB1- and CUL4-associated factor 8 1 ANRDQDS(0.733)S(0.267)DDERALEDWVSSETSALPRPR 57.051 0.00092623 4623900 554.47 612.4 697.7 602.44 516.29 461.05 541.04 550.04 553.29 459.84 TRUE FALSE 562.2342907 679.263903 521.557006 563.8021948 586.6174389 542.810744 643.6995156 503.3106688 606.4359767 366.1243556 1.535637502 1.855281935 1.424535129 1.539919938 1.602235497 1.482585727 1.758144482 1.374698681 1.656366116 1 8.516189939 -12.57550123 0.393264206 1.03E-15 1.597632621 0.608296939 0.139535739 51.3894406 2.196647562 43.87170071 0.086733498 2.66E-13 12.57550123 1.597632621 ANRDQDSS(ph)DDERALEDWVSSETSALPRPR ddPTM_K562_Paclitaxel_30min_R1 1 ANRDQDSSDDERALEDWVSSETSALPRPR 29 3 Q5TAQ8;V9GY54;Q5TAQ9-2;Q5TAQ9 Q5TAQ8 DCAF8 DDB1- and CUL4-associated factor 8 1 ANRDQDS(0.406)S(0.594)DDERALEDWVSSETSALPRPR 66.711 0.00021446 5320400 615.47 490 775.98 669.74 447.64 586.42 528.83 764.14 724.13 702.57 TRUE FALSE 624.0884789 543.4998571 580.0742518 626.785874 508.6161466 690.4133533 629.1727318 699.2215374 793.685922 559.3858484 1.115667264 0.971601013 1.036984138 1.120489329 0.909240282 1.234234572 1.124756255 1.249980741 1.418852344 1 9.127699946 -7.284520196 24.67783834 1.216138069 1.032834471 0.366089146 0.114550917 713.5287257 762896.6852 0.039206391 0.034599889 5.19E-08 7.284520196 -0.183303598 ANS(ph)PEKPPEAGAAHKPR ddPTM_K562_Paclitaxel_30min_R1 1 ANSPEKPPEAGAAHKPR 17 2 F8WDB4;Q9UFC0 F8WDB4 LRWD1 Leucine-rich repeat and WD repeat-containing protein 1 1 ANS(1)PEKPPEAGAAHKPR 73.593 0.012263 182020000 4577.9 2374.2 9987.4 4654.8 3065.4 2240.5 2460.5 4679.4 3619.6 6264.5 TRUE FALSE 4642.004724 2633.423185 7465.957347 4356.261962 3482.959378 2637.821217 2927.36703 4281.855762 3967.278753 4987.791461 0.930673377 0.527973795 1.496846331 0.873384943 0.698296913 0.528855554 0.58690646 0.858467279 0.79539788 1 12.28418543 -6.535269415 12.01238932 0.724906021 0.980325968 0.154703265 0.251108387 0.934022579 894.4562845 0.074934256 0.09778608 2.92E-07 6.535269415 0.255419947 ANSALTPPKPES(ph)GLTLQESNTPGLR ddPTM_K562_Paclitaxel_30min_R1 1 ANSALTPPKPESGLTLQESNTPGLR 25 1 Q9BW04-2;Q9BW04 Q9BW04-2 SARG Specifically androgen-regulated gene protein 1 ANS(0.003)ALT(0.04)PPKPES(0.884)GLT(0.044)LQES(0.013)NT(0.015)PGLR 55.469 0.018311 0 2095 2096.1 3652.6 2709.8 1721.9 1774.5 1465.3 1732.4 2394.2 2708.5 TRUE FALSE 2124.336464 2324.959287 2730.455955 2536.005557 1956.451932 2089.18266 1743.333026 1585.221807 2624.173608 2156.506213 0.985082468 1.078113883 1.266147966 1.175978785 0.907232226 0.968781192 0.808406215 0.735087985 1.216863458 1 11.07448016 -6.766272899 24.99168323 0.921069403 1.132873665 0.302954348 0.137089428 136.9452899 708074.4148 0.04259155 0.04984554 1.71E-07 6.766272899 0.211804262 ANSWQLVET(ph)PEKR ddPTM_K562_Paclitaxel_30min_R1 1 ANSWQLVETPEKR 13 1 F8WF49;A0A0B4J2C2;Q9Y2H0-3;Q9Y2H0-1;Q9Y2H0 F8WF49 DLGAP4 Disks large-associated protein 4 1 ANSWQLVET(1)PEKR 102.5 0.008572 32305000 1447.6 1213 2293.9 1565.5 1191.7 1331.1 1029.7 1644.2 943.67 2105.3 TRUE FALSE 1467.870866 1345.439442 1714.776574 1465.095837 1354.029716 1567.151895 1225.0802 1504.514947 1034.31372 1676.238704 0.875693219 0.802653846 1.022990681 0.874037709 0.807778577 0.934921674 0.730850682 0.897554115 0.617044409 1 10.71101189 -7.752007503 24.99858754 0.802825137 0.884622173 0.097504008 0.110470682 436.8682289 1157894.244 0.040206354 0.030720429 1.77E-08 7.752007503 0.081797036 ANVLS(ph)SPCDQAGLHHR ddPTM_K562_Paclitaxel_30min_R1 2 ANVLSSPCDQAGLHHR 16 0 Q14153-2;Q14153 Q14153-2 FAM53B Protein FAM53B 1 ANVLS(0.64)S(0.36)PCDQAGLHHR;ANVLS(0.5)S(0.5)PCDQAGLHHR 95.981 0.0039028 36316000 3400.3 2863.4 3768.6 3036.1 2667.1 3052.4 2850.8 2841.1 2959.1 3489.8 TRUE FALSE 3447.914691 3176.035695 2817.170321 2841.378135 3030.404174 3593.700282 3391.724418 2599.730821 3243.334777 2778.576844 1.240892329 1.143044038 1.013889656 1.022601963 1.090631767 1.293360048 1.220669648 0.935633948 1.16726474 1 11.44013042 -8.253685492 24.97992654 1.038587006 1.139953682 0.205113307 0.100493391 1093.903213 3524132.362 0.052038555 0.029324037 5.58E-09 8.253685492 0.101366676 ANVLSS(ph)PCDQAGLHHR ddPTM_K562_Paclitaxel_30min_R1 3 ANVLSSPCDQAGLHHR 16 0 Q14153-2;Q14153 Q14153-2 FAM53B Protein FAM53B 1 ANVLS(0.06)S(0.94)PCDQAGLHHR;ANVLS(0.21)S(0.79)PCDQAGLHHR;ANVLS(0.083)S(0.917)PCDQAGLHHR 235.45 2.39E-40 83973700 6311.3 6232.6 6962.1 6770.2 6793.1 5768.8 5883.8 7093.4 6453 7282.4 TRUE FALSE 6399.677672 6913.096345 5204.431749 6335.989674 7718.435228 6791.815682 7000.220335 6490.771394 7072.839483 5798.242883 1.103727078 1.192274364 0.897587744 1.092743061 1.331167974 1.171357568 1.207300294 1.119437651 1.219824631 1 12.50140005 ANVS(ph)SPHREFPPATAR ddPTM_K562_Paclitaxel_30min_R1 1 ANVSSPHREFPPATAR 16 1 H0Y555;Q5QPM9;Q5QPM7;Q92530 H0Y555 PSMF1 Proteasome inhibitor PI31 subunit 1 ANVS(0.867)S(0.133)PHREFPPATAR 77.42 0.019083 112100000 197.35 108.42 307.74 191.46 195.65 201.9 152.46 277.14 307.79 157.18 TRUE FALSE 200.1135089 120.2576623 230.0472309 179.1806125 222.3008424 237.7041302 181.3884891 253.5952271 337.3546047 125.1466297 1.599032346 0.960934086 1.838221544 1.431765385 1.776323045 1.899404968 1.449407703 2.026384791 2.69567471 1 6.967475629 -6.519862346 0.81240663 1.889428261 1.314634289 0.116994974 0.453909313 1.390212764 1.84787548 0.222332116 0.520046594 3.02E-07 6.519862346 -0.574793971 ANVSS(ph)PHREFPPATAR ddPTM_K562_Paclitaxel_30min_R1 1 ANVSSPHREFPPATAR 16 1 H0Y555;Q5QPM9;Q5QPM7;Q92530 H0Y555 PSMF1 Proteasome inhibitor PI31 subunit 1 ANVS(0.442)S(0.556)PHREFPPAT(0.002)AR 98.077 0.012792 5122700 1565.8 1157.7 1855.8 1506.1 1235.9 1245.9 1338 1699.1 1551 1644.7 TRUE FALSE 1587.726031 1284.101601 1387.280338 1409.505487 1404.250504 1466.842872 1591.878515 1554.75085 1699.98048 1309.509237 1.212458825 0.980597589 1.059389501 1.076361622 1.072348682 1.120147022 1.215629848 1.187277497 1.298181358 1 10.35481052 -7.555911841 3.546529299 1.190558594 1.074166139 0.196374777 0.087650797 0.306770678 8.165530055 0.033078719 0.025852443 2.78E-08 7.555911841 -0.116392455 APACS(ph)PEAAAAQLR ddPTM_K562_Paclitaxel_30min_R1 2 APACSPEAAAAQLR 14 0 A0A0C3SFZ9;M0QZI3;O14526-3;O14526-2;O14526 A0A0C3SFZ9 FCHO1 F-BAR domain only protein 1 1 APACS(1)PEAAAAQLR;APACS(1)PEAAAAQLR 145.61 1.26E-05 114528000 1191.93 1170.01 1202.18 1210.7 954.94 900.36 1103.1 1084.6 1124.06 1040.68 TRUE FALSE 1208.620697 1297.755649 898.6747906 1133.051121 1085.018995 1060.026204 1312.407466 992.4564601 1232.030985 828.5888448 1.458649492 1.566223896 1.084584708 1.367446748 1.309478159 1.27931508 1.583906753 1.197767103 1.486902694 1 9.694512587 -11.21835433 3.63917277 0.999482198 1.364457246 0.34967529 0.151369746 55273849.47 89245780.83 324878.6231 0.036709689 6.05E-12 11.21835433 0.364975048 APAPVVLGS(ph)PVVLGPPVGQAR ddPTM_K562_Paclitaxel_30min_R1 2 APAPVVLGSPVVLGPPVGQAR 21 0 A0A0C4DFM2;Q6ZN55;Q6ZN55-2 A0A0C4DFM2 ZNF574 Zinc finger protein 574 1 APAPVVLGS(1)PVVLGPPVGQAR;APAPVVLGS(1)PVVLGPPVGQAR 124.98 2.49E-07 13127000 1064.31 1202.17 1662.21 1437.08 1049.09 991.67 1120.87 1603.45 740.23 1693.45 TRUE FALSE 1079.213624 1333.426986 1242.564528 1344.912121 1191.993819 1167.528751 1333.549231 1467.226914 811.3323989 1348.32396 0.800411218 0.988951487 0.921562298 0.99746957 0.88405595 0.86591115 0.989042152 1.088185746 0.601734021 1 10.39695146 -8.747774074 24.99998213 0.800866799 0.941792012 0.187737762 0.117381795 318.3240559 582364.4206 0.075126873 0.02805888 1.79E-09 8.747774074 0.140925213 APAS(ph)PGAGSDAQGPQFGWDHSLHK ddPTM_K562_Paclitaxel_30min_R1 2 APASPGAGSDAQGPQFGWDHSLHK 24 0 Q5T6F0 Q5T6F0 DCAF12 DDB1- and CUL4-associated factor 12 1 APAS(1)PGAGSDAQGPQFGWDHSLHK;APAS(1)PGAGSDAQGPQFGWDHSLHK 116.99 4.39E-08 44165000 4448.4 3873 6771.6 4558.8 3659.7 3324.6 3348.2 5160.3 3849.5 6517.1 TRUE FALSE 4510.691324 4295.867238 5062.02583 4266.418972 4158.213099 3914.17113 3983.503471 4721.900305 4219.261675 5188.911443 0.869294335 0.827893728 0.975546776 0.822218498 0.801365208 0.75433377 0.767695405 0.909998245 0.813130407 1 12.3412162 -11.64195386 2.672530768 1.017913175 0.837749433 0.375337355 0.062719274 31814554.34 28296427.71 3925805.213 0.017027682 2.28E-12 11.64195386 -0.180163742 APDSGLPSGGGGRPGCAY(ph)PGSPGPGAR ddPTM_K562_Paclitaxel_30min_R1 1 APDSGLPSGGGGRPGCAYPGSPGPGAR 27 1 Q6PJ61 Q6PJ61 FBXO46 F-box only protein 46 1 APDSGLPS(0.003)GGGGRPGCAY(0.828)PGS(0.169)PGPGAR 67.136 0.0040858 65199000 1393.7 920.8 1692.5 1325.9 961.35 1294.9 1348.9 1355.8 1214.1 1396.2 TRUE FALSE 1413.2161 1021.336058 1265.207442 1240.862709 1092.302146 1524.532334 1604.846733 1240.616327 1330.71973 1111.653674 1.271273719 0.918753819 1.138130942 1.116231375 0.982592125 1.371409433 1.443657113 1.11600974 1.197063223 1 10.11849168 -7.255784569 24.97789325 1.246505336 1.08078123 0.181471901 0.145408203 699.161087 3088272.015 0.048222547 0.046921798 5.55E-08 7.255784569 -0.165724106 APGS(ph)PLSSEGAAGEGVR ddPTM_K562_Paclitaxel_30min_R1 4 APGSPLSSEGAAGEGVR 17 0 Q6JBY9;B7ZKW8 Q6JBY9 RCSD1 CapZ-interacting protein 1 APGS(0.994)PLS(0.005)S(0.001)EGAAGEGVR;APGS(0.933)PLS(0.051)S(0.017)EGAAGEGVR;APGS(0.83)PLS(0.101)S(0.07)EGAAGEGVR;APGS(0.948)PLS(0.04)S(0.012)EGAAGEGVR 205.12 2.95E-17 1025060000 2682.38 2499.05 3338.72 3421 2617.91 2102.53 2095.78 2903.94 2537.69 2960.99 TRUE FALSE 2719.941596 2771.90473 2495.818843 3201.592372 2974.513664 2475.384175 2493.443314 2657.232171 2781.446463 2357.538613 1.153720911 1.175762176 1.058654492 1.358023302 1.261703052 1.049986694 1.057646861 1.127121379 1.179809505 1 11.20306568 -7.268234746 24.95682853 1.089278847 1.200890654 0.328241917 0.084628246 749.3894639 2752215.428 0.031157449 0.028080938 5.39E-08 7.268234746 0.111611808 APGTPHSHTKPYVR ddPTM_K562_Paclitaxel_30min_R1 1 APGTPHSHTKPYVR 14 1 F8VUA6;F8VYV2;H0YHA7;J3QQ67;Q07020-2;Q07020 F8VUA6 RPL18 60S ribosomal protein L18 0 82.85 0.024653 9273300 2178.2 2247.1 3832.7 2788.3 2471.8 2145.1 1889.7 2679.4 2812 3545.9 FALSE TRUE 2208.70152 2492.445977 2865.087483 2609.470918 2808.501008 2525.503366 2248.26071 2451.768246 3082.105164 2823.243634 0.782327637 0.882830638 1.014821197 0.924281166 0.994778125 0.894539648 0.796339601 0.868422483 1.091689406 1 11.46313792 -2.000124845 0.016681164 1.671372779 2.26E-06 0.156029518 0.086747647 11394.1973 14.70006767 574.1933297 940.3291912 0.009997126 2.000124845 -1.671370514 APGVPEFHSSILVTDLGHGT(ph)SSPPAPVSR ddPTM_K562_Paclitaxel_30min_R1 1 APGVPEFHSSILVTDLGHGTSSPPAPVSR 29 0 Q9HAP2;F5H0V4;Q9HAP2-4;Q9HAP2-2 Q9HAP2 MLXIP MLX-interacting protein 1 APGVPEFHSSILVTDLGHGT(0.503)S(0.28)S(0.211)PPAPVS(0.006)R 86.722 3.10E-06 12884000 564.03 324.74 462.2 578.74 634.3 493.56 408.37 690.58 534.63 671.52 TRUE FALSE 571.9281602 360.1962114 345.5118936 541.6222067 720.7023988 581.0859361 485.8560757 631.9109185 585.9836003 534.6638554 1.069696697 0.673687229 0.64622265 1.013014441 1.347954217 1.086824797 0.908713149 1.181884491 1.095985065 1 9.06248834 -6.455063668 6.414865999 1.108896001 0.7883746 0.452157768 0.150936592 0.207347835 15.81244975 0.043532266 0.064407244 3.51E-07 6.455063668 -0.320521401 APGVPEFHSSILVTDLGHGTS(ph)SPPAPVSR ddPTM_K562_Paclitaxel_30min_R1 1 APGVPEFHSSILVTDLGHGTSSPPAPVSR 29 0 Q9HAP2;F5H0V4;Q9HAP2-4;Q9HAP2-2 Q9HAP2 MLXIP MLX-interacting protein 1 APGVPEFHSSILVTDLGHGT(0.217)S(0.46)S(0.322)PPAPVS(0.001)R 103.14 1.18E-08 16185000 875.29 942.13 864.7 936.66 922.28 778.75 869.09 1064.9 804.83 1319.1 TRUE FALSE 887.5467605 1044.994939 646.3957905 876.5868199 1047.91015 916.8503783 1033.995291 974.4300981 882.1375176 1050.266696 0.845067985 0.994980554 0.615458714 0.834632597 0.997756241 0.872969106 0.984507359 0.927793009 0.839917633 1 10.03654 -6.64117793 7.632845373 0.932397263 0.8181406 0.245836594 0.098378046 0.355164432 22.24449586 0.029252935 0.037786638 2.28E-07 6.64117793 -0.114256664 APGYPSS(ph)PVTTASGTTLR ddPTM_K562_Paclitaxel_30min_R1 1 APGYPSSPVTTASGTTLR 18 0 H0YJG4;Q9HCK8-2;Q9HCK8;H0YJA4 H0YJG4 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 APGYPS(0.295)S(0.391)PVT(0.089)T(0.027)AS(0.048)GT(0.116)T(0.034)LR 108.96 0.00071983 37769000 2069.6 1703.3 2033.6 1977.3 1760.5 1999.6 2219.3 1981.6 891.09 2766.3 TRUE FALSE 2098.580785 1889.272054 1520.192529 1850.484828 2000.309906 2354.200984 2640.400589 1813.250711 976.683176 2202.526542 0.952806128 0.857774932 0.690203954 0.840164599 0.908188786 1.068863843 1.198805345 0.823259415 0.443437642 1 11.10494369 -12.37185606 2.407588291 1.985696692 0.87464045 0.039974334 0.193418382 20554889.17 3742379.034 111112961 0.051028381 4.25E-13 12.37185606 -1.111056243 APLS(ph)PSLLIR ddPTM_K562_Paclitaxel_30min_R1 1 APLSPSLLIR 10 0 O75807 O75807 PPP1R15A Protein phosphatase 1 regulatory subunit 15A 1 APLS(0.943)PS(0.057)LLIR 92.943 0.014972 20674000 3113.5 3430.9 4099 3512.1 2997.3 3184.8 3243 3755.4 3124.8 3593.3 TRUE FALSE 3157.098606 3805.497265 3064.156754 3286.849626 3405.583005 3749.579563 3858.34232 3436.35533 3424.951002 2860.983488 1.103501163 1.330136046 1.071015183 1.148853057 1.190353953 1.310591123 1.348606987 1.201109809 1.197123652 1 11.48229546 -5.008177009 17.85386291 1.208751361 1.028309583 0.063977768 0.105514657 17575702.92 713294690.5 0.026147077 55343223.4 9.81E-06 5.008177009 -0.180441778 APNPTAT(ph)SPPASAPR ddPTM_K562_Paclitaxel_30min_R1 2 APNPTATSPPASAPR 15 0 Q8IV32 Q8IV32 CCDC71 Coiled-coil domain-containing protein 71 1 APNPT(0.272)AT(0.481)S(0.247)PPASAPR;APNPT(0.009)AT(0.524)S(0.233)PPAS(0.233)APR 128.85 6.80E-09 6926400 1349.37 1440.31 1725.6 1482.37 1441.66 1427.94 1191.08 1865.28 1518.06 1410.42 TRUE FALSE 1368.265343 1597.567917 1289.950938 1387.297423 1638.0385 1681.16511 1417.081212 1706.812821 1663.876446 1122.97563 1.21842835 1.42262029 1.148690055 1.235376251 1.458658991 1.497062861 1.261898455 1.519901925 1.481667457 1 10.1331109 -6.751800673 24.89570822 1.396821618 1.260475347 0.094896185 0.159083713 373.5274383 964774.6196 0.04495864 0.057270417 1.77E-07 6.751800673 -0.136346271 APPAPVIPQLTVTAEEPDVPPT(ph)SPGPPERER ddPTM_K562_Paclitaxel_30min_R1 3 APPAPVIPQLTVTAEEPDVPPTSPGPPERER 31 1 P23677 P23677 ITPKA Inositol-trisphosphate 3-kinase A 1 APPAPVIPQLTVTAEEPDVPPT(0.5)S(0.5)PGPPERER;APPAPVIPQLT(0.001)VT(0.001)AEEPDVPPT(0.499)S(0.499)PGPPERER;APPAPVIPQLTVTAEEPDVPPT(0.5)S(0.5)PGPPERER 76.274 2.53E-06 60641000 648.19 391.88 782.87 530.23 537.81 634.89 554.59 598.94 783.92 794.729 TRUE FALSE 657.2666598 434.6667837 585.2247861 496.223421 611.0688272 747.4788272 659.8205573 548.0563085 859.2190186 632.7627936 1.038725201 0.686934801 0.924872309 0.784217129 0.965715484 1.181293898 1.042761307 0.866132323 1.357884862 1 9.305520962 -6.99699658 5.766785907 1.078445271 0.852723306 0.35630302 0.146032125 0.177244341 21.90218074 0.044564548 0.04840646 1.01E-07 6.99699658 -0.225721965 APPGQPAEPDAPRS(ph)SPGPGAR ddPTM_K562_Paclitaxel_30min_R1 2 APPGQPAEPDAPRSSPGPGAR 21 1 Q8IX07 Q8IX07 ZFPM1 Zinc finger protein ZFPM1 1 APPGQPAEPDAPRS(0.5)S(0.5)PGPGAR;APPGQPAEPDAPRS(0.5)S(0.5)PGPGAR 64.422 0.011448 150828000 1166.74 1336.89 1874.43 1937.89 1320.13 1201.25 1386.67 1560.73 1016.48 1667.87 TRUE FALSE 1183.07796 1482.856171 1401.206964 1813.602409 1499.954056 1414.274821 1649.783394 1428.136245 1114.117446 1327.957178 0.890900685 1.116644569 1.05515975 1.365708502 1.129519897 1.065000321 1.242346832 1.075438476 0.838970912 1 10.37499291 -8.607088384 5.991063687 0.923828552 1.13007179 0.302070709 0.121884564 0.250590917 13.89665723 0.085695063 0.031273805 2.47E-09 8.607088384 0.206243238 APPQTHLPSGASSGTGSASAT(ph)HGGGSPPGTR ddPTM_K562_Paclitaxel_30min_R1 1 APPQTHLPSGASSGTGSASATHGGGSPPGTR 31 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;A0A0G2JJM1;X6REW1;F6S6P2;F6UR09;F6TC96;F6U341;F6X9W3;F6WML8;A0A1B0GX79;A0A0G2JJR8;F6XTU0;F6U1F2;F6VEM6;P46379-4 P46379-3;P46379-4 BAG6;BAT3 Large proline-rich protein BAG6 1 APPQTHLPSGASSGTGSAS(0.002)AT(0.349)HGGGS(0.325)PPGT(0.325)R 103.37 4.18E-12 11645000 497.99 484.21 623.76 585.15 447.74 373.78 568.89 658.08 287.93 684.14 TRUE FALSE 504.9633964 537.0776853 466.2840734 547.621098 508.7297683 440.0646349 676.8339077 602.1719964 315.586963 544.7118925 0.927028404 0.985984871 0.856019631 1.005340815 0.933942834 0.807885124 1.242553939 1.105487148 0.579364922 1 9.089349555 APPQTHLPSGASSGTGSASATHGGGS(ph)PPGTR ddPTM_K562_Paclitaxel_30min_R1 5 APPQTHLPSGASSGTGSASATHGGGSPPGTR 31 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;A0A0G2JJM1;X6REW1;F6S6P2;F6UR09;F6TC96;F6U341;F6X9W3;F6WML8;A0A1B0GX79;A0A0G2JJR8;F6XTU0;F6U1F2;F6VEM6;P46379-4 P46379-3;P46379-4 BAG6;BAT3 Large proline-rich protein BAG6 1 APPQTHLPS(0.056)GAS(0.091)S(0.091)GT(0.011)GS(0.011)AS(0.018)AT(0.025)HGGGS(0.504)PPGT(0.193)R;APPQTHLPSGASSGTGSAS(0.006)AT(0.015)HGGGS(0.498)PPGT(0.481)R;APPQTHLPS(0.019)GAS(0.118)S(0.118)GT(0.006)GS(0.011)AS(0.032)AT(0.064)HGGGS(0.466)PPGT(0.166)R;APPQTHLPSGASSGTGSAS(0.001)AT(0.077)HGGGS(0.907)PPGT(0.015)R;APPQTHLPSGAS(0.004)S(0.004)GT(0.002)GS(0.007)AS(0.059)AT(0.041)HGGGS(0.501)PPGT(0.382)R 143.93 9.77E-31 3949636300 6301.85 5976.57 7437.27 7082.99 6227.23 5490.31 6431.12 7013.06 4224.29 7389.55 TRUE FALSE 6390.095343 6629.112124 5559.639206 6628.718724 7075.484154 6463.939391 7651.391447 6417.256779 4630.051929 5883.555654 1.086094144 1.126718691 0.94494546 1.126651827 1.202586424 1.098645066 1.30047065 1.090710644 0.786947928 1 12.52247258 -8.648628072 6.802847343 0.896580574 1.126366099 0.472244077 0.097162565 0.181360233 9.894178101 0.068359155 0.025179975 2.25E-09 8.648628072 0.229785525 APPQTHLPSGASSGTGSASATHGGGS(ph)PPGTRGPGASVHDR ddPTM_K562_Paclitaxel_30min_R1 1 APPQTHLPSGASSGTGSASATHGGGSPPGTRGPGASVHDR 40 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;A0A0G2JJM1;X6REW1;F6S6P2;F6UR09;F6TC96;F6U341;F6X9W3;F6WML8;A0A1B0GX79;A0A0G2JJR8;F6XTU0;F6U1F2;F6VEM6;P46379-4 P46379-3;P46379-4 BAG6;BAT3 Large proline-rich protein BAG6 1 APPQTHLPS(0.001)GAS(0.006)S(0.006)GT(0.006)GS(0.022)AS(0.022)AT(0.066)HGGGS(0.799)PPGT(0.066)RGPGAS(0.006)VHDR 67.064 3.65E-07 30057000 1980.8 1997.1 2320.6 2076.5 1927.5 1648.8 1643.3 1845.4 2353.3 1922.5 TRUE FALSE 2008.537311 2215.150132 1734.735829 1943.322584 2190.058133 1941.19153 1955.107596 1688.621751 2579.34498 1530.693445 1.312174765 1.447154647 1.13330062 1.26957007 1.430762077 1.268177855 1.277269203 1.103174354 1.685082659 1 10.57996966 -11.12624946 4.51607603 0.999964326 1.314982576 0.272638935 0.158556815 15806344.26 38942068.62 3068.67614 0.03629828 7.48E-12 11.12624946 0.31501825 APQT(ph)S(ph)SSPPPVR ddPTM_K562_Paclitaxel_30min_R1 1 APQTSSSPPPVR 12 0 A9Z1X7;Q8IYB3-2;Q8IYB3;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 2 APQT(0.74)S(0.442)S(0.317)S(0.501)PPPVR 100.02 0.019875 98483000 3549.3 3125.6 4180.7 3595.6 3529.9 3098.1 2803 3948.6 3161.3 3981.2 TRUE FALSE 3599.001151 3466.863578 3125.230579 3364.994309 4010.732142 3647.504536 3334.854617 3613.141784 3464.95699 3169.829255 1.135392749 1.093706727 0.985930259 1.06156958 1.265283338 1.150694325 1.052061278 1.139853757 1.093105247 1 11.63018942 -5.255094876 21.92623894 1.099437692 1.135392806 0.02123491 0.076347059 791.8441827 2736110.414 0.019970935 0.169270741 5.56E-06 5.255094876 0.035955114 APQTS(ph)SS(ph)PPPVR ddPTM_K562_Paclitaxel_30min_R1 1 APQTSSSPPPVR 12 0 A9Z1X7;Q8IYB3-2;Q8IYB3;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 2 APQT(0.039)S(0.748)S(0.445)S(0.768)PPPVR 141.65 0.00070245 101830000 2939.1 3454.9 4002.8 3213.4 3156.8 2777.2 2752.3 3399.7 2763.3 3402.3 TRUE FALSE 2980.256468 3832.117666 2992.243634 3007.306907 3586.809605 3269.697426 3274.534557 3110.874265 3028.727312 2708.909392 1.100168384 1.414634862 1.104593473 1.110154114 1.32407884 1.207016165 1.208801803 1.148386237 1.118061505 1 11.40349642 -8.976020161 1.113216265 1.001720327 1.215630823 0.322259759 0.094273496 0.598186624 1.670842876 0.087594406 0.028303674 1.06E-09 8.976020161 0.213910496 APQTS(ph)SSPPPVR ddPTM_K562_Paclitaxel_30min_R1 2 APQTSSSPPPVR 12 0 A9Z1X7;Q8IYB3-2;Q8IYB3;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 APQT(0.069)S(0.526)S(0.266)S(0.138)PPPVR;APQT(0.021)S(0.408)S(0.408)S(0.162)PPPVR 147.33 0.00011706 1432721000 8641.9 9372.7 10788.5 9795.5 9085.3 8110.5 8089.6 9936.4 8431.3 10126.9 TRUE FALSE 8762.913263 10396.04308 8064.809745 9167.260473 10322.87168 9548.783298 9624.559369 9092.240799 9241.164037 8063.032221 1.086801221 1.289346588 1.000220453 1.136949503 1.280271664 1.184267039 1.193665002 1.127645351 1.146115231 1 12.97710677 -11.33007493 6.238393484 0.9999892 1.163182699 0.260734056 0.081014862 1.20E-05 1.29E-06 0.077345067 0.018757693 4.68E-12 11.33007493 0.163193499 APQTSS(ph)SPPPVR ddPTM_K562_Paclitaxel_30min_R1 1 APQTSSSPPPVR 12 0 A9Z1X7;Q8IYB3-2;Q8IYB3;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 APQT(0.031)S(0.115)S(0.427)S(0.427)PPPVR 118.76 0.0031381 55695000 1348 1186.6 1776.6 1228.3 1048 1254 1336.4 1330.1 978.74 1472 TRUE FALSE 1366.876159 1316.157001 1328.075357 1149.522336 1190.755343 1476.379293 1589.974924 1217.099703 1072.75235 1172.005592 1.166271021 1.122995496 1.133164693 0.980816426 1.015998005 1.259703284 1.356627421 1.03847602 0.915313338 1 10.19476374 -8.516754745 24.3557432 0.964069239 1.143375371 0.361240406 0.103136313 252.4955193 1004231.712 0.072411896 0.029420592 3.04E-09 8.516754745 0.179306131 APQTSSS(ph)PPPVR ddPTM_K562_Paclitaxel_30min_R1 3 APQTSSSPPPVR 12 0 A9Z1X7;Q8IYB3-2;Q8IYB3;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 APQTS(0.011)S(0.109)S(0.88)PPPVR;APQT(0.017)S(0.07)S(0.289)S(0.624)PPPVR;APQT(0.019)S(0.072)S(0.268)S(0.641)PPPVR 170.26 0.0002218 2126410000 11282.8 11406.8 14563.1 12757.4 11093.7 10764.5 9695 12730 11556.4 13335 TRUE FALSE 11440.79401 12652.233 10886.46529 11939.19746 12604.84976 12673.43293 11534.57564 11648.50704 12666.44386 10617.31968 1.077559531 1.191659796 1.025349676 1.124502023 1.18719697 1.193656527 1.086392422 1.097123134 1.192998255 1 13.37413199 -11.22321919 4.326667172 0.999944096 1.130446928 0.325912338 0.056395771 3.08E-05 5.53E-06 0.054423799 0.013193967 5.98E-12 11.22321919 0.130502832 APRPSAPS(ph)PPPR ddPTM_K562_Paclitaxel_30min_R1 1 APRPSAPSPPPR 12 1 Q8IV50 Q8IV50 LYSMD2 LysM and putative peptidoglycan-binding domain-containing protein 2 1 APRPSAPS(1)PPPR 76.574 0.02851 33498000 475.97 389.94 346.96 395.62 298.26 322.45 349.32 240.3 375.05 283.54 TRUE FALSE 482.6350485 432.5149679 259.3656569 370.2467039 338.8880616 379.6319801 415.6016464 219.8850151 411.0752283 225.7543924 2.13787667 1.915865128 1.148884211 1.640042083 1.501136071 1.681615034 1.840946004 0.97400105 1.820895815 1 7.818610247 -2 0.047082675 9.47E-16 4.35504506 0.31456938 0.316112804 738.0427652 2.636059436 60.05218061 239.1535622 0.01 2 4.35504506 APS(ph)ASPLALHASR ddPTM_K562_Paclitaxel_30min_R1 1 APSASPLALHASR 13 0 H0Y6J8;Q8N3F8 H0Y6J8 MICALL1 MICAL-like protein 1 1 APS(0.505)AS(0.495)PLALHASR 78.244 0.026588 14276000 1234.9 1021.2 1174.5 1323.1 1140 1200.9 1239.9 1619.5 1203.4 1847.1 TRUE FALSE 1252.19241 1132.698069 877.982949 1238.242288 1295.2873 1413.862754 1475.164552 1481.913366 1318.991947 1470.660006 0.851449285 0.770197098 0.596999269 0.841963665 0.88075238 0.961379753 1.003062942 1.007651912 0.896870753 1 10.52224804 -6.83070497 1.965820669 0.974968464 0.743207994 0.679110556 0.068714755 0.192134468 1.526876655 0.024831223 0.030751766 1.48E-07 6.83070497 -0.23176047 APS(ph)DS(ph)SLGTPSDGRPELR ddPTM_K562_Paclitaxel_30min_R1 1 APSDSSLGTPSDGRPELR 18 1 M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3;Q15642;M0R2H7;Q15642-5 M0R0F9 TRIP10 Cdc42-interacting protein 4 2 APS(0.65)DS(0.743)S(0.496)LGT(0.096)PS(0.015)DGRPELR 97.129 0.0039179 0 1195.2 1058.9 1365.9 1276.2 1138.8 687.39 1175.8 1164.8 907.03 1480.4 TRUE FALSE 1211.936488 1174.514283 1021.061652 1194.350244 1293.92384 809.2889651 1398.901912 1065.84297 994.1542842 1178.693667 1.028203104 0.996454223 0.866265494 1.01328299 1.097760916 0.686598212 1.186823982 0.904257823 0.843437368 1 10.20297311 APS(ph)DSSLGTPSDGRPELR ddPTM_K562_Paclitaxel_30min_R1 4 APSDSSLGTPSDGRPELR 18 1 M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3;Q15642;M0R2H7;Q15642-5 M0R0F9 TRIP10 Cdc42-interacting protein 4 1 APS(0.543)DS(0.225)S(0.225)LGT(0.005)PS(0.002)DGRPELR;APS(0.821)DS(0.035)S(0.144)LGTPSDGRPELR;APS(0.996)DS(0.002)S(0.002)LGTPSDGRPELR;APS(0.656)DS(0.147)S(0.197)LGTPSDGRPELR 127.37 1.99E-06 331922000 2568.81 2636.11 3439.68 3106.67 2658.46 2640.21 2702.61 2893.52 2194.37 3297.37 TRUE FALSE 2604.781265 2923.929405 2571.290243 2907.422091 3020.58726 3108.414173 3215.416139 2647.697415 2405.149043 2625.364184 0.992159976 1.113723354 0.979403261 1.107435726 1.150540286 1.183993517 1.224750516 1.008506717 0.916120155 1 11.35830185 -8.509586069 23.1218116 0.959477771 1.108013347 0.413528045 0.073977377 231.1934786 402157.1114 0.046391402 0.020622536 3.09E-09 8.509586069 0.148535576 APS(ph)EIDPR ddPTM_K562_Paclitaxel_30min_R1 1 APSEIDPR 8 0 O95801 O95801 TTC4 Tetratricopeptide repeat protein 4 1 APS(1)EIDPR 81.525 0.030048 64185000 7277.9 6999 7631.7 7580 5912.6 5919.6 7416.7 8268.8 8174.7 9858.9 TRUE FALSE 7379.813054 7763.174489 5704.982947 7093.852727 6717.996221 6969.357945 8823.980107 7566.313828 8959.916461 7849.650768 0.940145399 0.988983423 0.726781753 0.903715711 0.855833771 0.887855798 1.124123909 0.963904516 1.141441412 1 12.93841275 -7.744358416 24.10805548 1.05435947 0.881148202 0.531015817 0.079825189 124.27661 175403.7836 0.030092354 0.02324138 1.80E-08 7.744358416 -0.173211268 APS(ph)LEDGSDAFMSPQDVR ddPTM_K562_Paclitaxel_30min_R1 2 APSLEDGSDAFMSPQDVR 18 0 E9PJ68;O75387;O75387-2 E9PJ68 SLC43A1 Large neutral amino acids transporter small subunit 3 1 APS(1)LEDGSDAFMSPQDVR;APS(1)LEDGSDAFMSPQDVR 202.96 5.84E-16 53329000 747.81 828.08 1244.25 961.57 915.05 978.51 857.6 1035.58 669.41 1343.56 TRUE FALSE 758.2816472 918.4925748 930.1236988 899.899204 1039.695302 1152.03501 1020.325123 947.6010151 733.7098215 1069.741735 0.70884553 0.858611518 0.869484352 0.841230341 0.971912442 1.076928171 0.953805101 0.885822236 0.685875663 1 10.06304682 -4.487688034 0.871065285 0.921918901 0.127172158 0.284660424 0.098591376 10.69228886 2.382750856 0.036179783 11.1705118 3.25E-05 4.487688034 -0.794746742 APS(ph)LTDLVK ddPTM_K562_Paclitaxel_30min_R1 1 APSLTDLVK 9 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 APS(0.681)LT(0.319)DLVK 102.05 0.010143 54111000 3327.2 3088.3 6226.5 4226.8 3358.3 2500.1 2956.1 4344.2 2903.4 4773.4 TRUE FALSE 3373.791065 3425.491038 4654.543067 3955.711966 3815.757316 2943.457632 3517.004543 3975.133094 3182.284543 3800.57846 0.887704622 0.901307807 1.224693324 1.040818393 1.003993828 0.774476218 0.925386643 1.045928439 0.837315839 1 11.8920033 -7.028956566 24.63539711 0.916617022 1.020899149 0.153153415 0.111451993 1141.875198 971471.5659 0.038358521 0.038430782 9.35E-08 7.028956566 0.104282128 APS(ph)LTNDEVEEFR ddPTM_K562_Paclitaxel_30min_R1 3 APSLTNDEVEEFR 13 0 A0A3B3ISR7;E9PIF2;Q13206 A0A3B3ISR7 DDX10 Probable ATP-dependent RNA helicase DDX10 1 APS(0.909)LT(0.091)NDEVEEFR;APS(0.967)LT(0.033)NDEVEEFR;APS(0.767)LT(0.233)NDEVEEFR 169.98 0.00013321 121695000 1616.68 1660.87 1940.18 1764.63 1686.76 1560.87 1382.49 1781.51 1436.73 1907.72 TRUE FALSE 1639.318508 1842.209403 1450.357563 1651.45453 1916.525269 1837.668379 1644.81026 1630.159606 1574.734336 1518.925617 1.079261874 1.212837142 0.95485753 1.087251747 1.261763741 1.209847512 1.082877425 1.073232018 1.036742233 1 10.56883551 -8.512075137 1.686220098 1.011486128 1.131671559 0.229791111 0.082157278 0.628565895 3.18387958 0.077716723 0.025514131 3.08E-09 8.512075137 0.120185431 APS(ph)PASFQR ddPTM_K562_Paclitaxel_30min_R1 4 APSPASFQR 9 0 A0A3F2YNW7;Q8NFD5;Q8NFD5-2;Q8NFD5-3;A0A1B0GV63;A0A1B0GWJ2;A0A1B0GTJ8;A0A1B0GVK1;H0Y7H8;Q8NFD5-4 A0A3F2YNW7 ARID1B AT-rich interactive domain-containing protein 1B 1 APS(1)PASFQR;APS(0.999)PAS(0.001)FQR;APS(0.999)PAS(0.001)FQR;APS(0.999)PAS(0.001)FQR 139.15 0.00083621 103383000 4659.55 4673.78 6306.4 5019.41 4455.88 4207.89 4232.72 4796.45 4990.36 5857.2 TRUE FALSE 4724.798076 5184.079106 4714.271323 4697.487509 5062.846295 4954.10021 5035.856524 4388.961634 5469.706376 4663.499425 1.013144346 1.111628551 1.010887082 1.007288107 1.085632448 1.062313889 1.079844997 0.941130519 1.172875962 1 12.18719722 -5.807745254 24.9993618 1.044861809 1.062389001 0.012016918 0.06306083 716.7528304 386954.9458 0.015533153 0.03233519 1.56E-06 5.807745254 0.017527192 APS(ph)PPEAALQPAPTEPR ddPTM_K562_Paclitaxel_30min_R1 1 APSPPEAALQPAPTEPR 17 0 Q9NVR5-2;Q9NVR5 Q9NVR5-2 DNAAF2 Protein kintoun 1 APS(1)PPEAALQPAPTEPR 110.32 0.0014585 0 352.94 229.22 443.84 372.89 425.68 245.77 361.39 408.17 394.08 565.18 TRUE FALSE 357.8822489 254.2470148 331.7871027 348.9745044 483.6648228 289.3538587 429.9618659 373.4934108 431.9331448 449.9960058 0.795300946 0.564998381 0.737311217 0.775505782 1.074820258 0.643014282 0.955479294 0.829992724 0.959859953 1 8.813768386 -5.533356643 0.226957533 1.004657695 0.423325102 0.33663641 0.125984884 11.83425957 0.604024504 0.222459733 1.946093975 2.93E-06 5.533356643 -0.581332594 APS(ph)PPLSQVFQTR ddPTM_K562_Paclitaxel_30min_R1 1 APSPPLSQVFQTR 13 0 B1AKL4;Q9NRA8-2;Q9NRA8;Q9NRA8-3 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 APS(1)PPLSQVFQTR 125.36 0.00097077 112460000 664.74 669.58 902.16 548.9 632.04 680.44 661.79 552.12 621.31 792.77 TRUE FALSE 674.0484109 742.6870088 674.3985502 513.6960108 718.1345485 801.1064801 787.3611977 505.2139598 680.9896016 631.2030388 1.067878907 1.176621409 1.068433624 0.813836403 1.137723528 1.269173991 1.247397666 0.800398491 1.07887567 1 9.301960341 -8.258036017 24.99929634 0.954727816 1.108037901 0.209537927 0.134902376 503.3147883 3697112.683 0.071160971 0.038893283 5.52E-09 8.258036017 0.153310085 APS(ph)PPVEHPR ddPTM_K562_Paclitaxel_30min_R1 2 APSPPVEHPR 10 0 Q86WR7;Q86WR7-2 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 APS(1)PPVEHPR;APS(1)PPVEHPR 101.89 0.0063693 89142000 607.39 766.48 743.83 582.38 452.57 424.43 444.44 406.11 664.54 601.3 TRUE FALSE 615.895334 850.1668785 556.0409169 545.0287534 514.2176961 499.6967012 528.7701699 371.6084206 728.3720362 478.7547299 1.28645274 1.775787946 1.161431694 1.138430013 1.074073349 1.043742589 1.104469861 0.77619791 1.5213887 1 8.90314293 -5.896353714 6.840607131 1.087392204 1.527836722 0.415305398 0.204491504 0.177704379 10.26573895 0.049819635 0.105240735 1.27E-06 5.896353714 0.440444518 APS(ph)PTAEQPPGGGDSARR ddPTM_K562_Paclitaxel_30min_R1 1 APSPTAEQPPGGGDSARR 18 1 Q15742-2;Q15742-3;Q15742 Q15742-2 NAB2 NGFI-A-binding protein 2 1 APS(0.425)PT(0.425)AEQPPGGGDS(0.15)ARR 64.203 0.022212 48128000 685.86 669.63 1007.5 596.72 706.11 705.03 498.4 661.54 549.89 766.52 TRUE FALSE 695.4641561 742.7424679 753.1441644 558.44905 802.2941365 830.0571714 592.9687982 605.3380478 602.7093915 610.3028032 1.139539508 1.217006483 1.234049984 0.915036023 1.314583732 1.360074322 0.971597697 0.991865095 0.98755796 1 9.253381407 -7.794896008 24.99960176 0.987077066 1.191888525 0.454577603 0.112056518 191.3425411 142974.0507 0.048956175 0.033008409 1.60E-08 7.794896008 0.20481146 APS(ph)PVPASS(ph)LQDHS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 APSPVPASSLQDHSR 15 0 Q9NRJ2 Q9NRJ2 GSN-AS1 Putative uncharacterized protein GSN-AS1 3 APS(0.867)PVPAS(0.509)S(0.626)LQDHS(0.999)R;APS(0.783)PVPAS(0.335)S(0.883)LQDHS(1)R 98.281 0.005958 48363000 0 0 67.652 0 0 0 0 131.29 0 0 TRUE FALSE 0 0 50.57241589 0 0 0 0 120.136095 0 0 0 APS(ph)SLSDAVPQR ddPTM_K562_Paclitaxel_30min_R1 1 APSSLSDAVPQR 12 0 M0R2Z9;Q8IX01-4;Q8IX01;M0R3F6;Q8IX01-3 M0R2Z9 SUGP2 SURP and G-patch domain-containing protein 2 1 APS(0.657)S(0.332)LS(0.01)DAVPQR 90.793 0.017617 32366000 1592.6 1321.6 1352.7 1150.4 1271.6 1150.9 966.75 1499.9 1489.7 1674.2 TRUE FALSE 1614.901314 1465.896757 1011.194155 1076.618493 1444.813448 1354.995956 1150.185766 1372.474133 1632.792341 1332.997121 1.211481471 1.099699868 0.758586901 0.807667531 1.083883397 1.016503287 0.862856902 1.029615227 1.224903127 1 10.38045795 -8.530004813 24.34068285 1.117387527 0.970744681 0.12596157 0.140734555 266.0450066 908698.4966 0.099177006 0.037681679 2.95E-09 8.530004813 -0.146642846 APS(ph)TPVPPSPAPAPGLTKR ddPTM_K562_Paclitaxel_30min_R1 1 APSTPVPPSPAPAPGLTKR 19 1 F8W126;Q96EZ8-3;Q96EZ8;Q96EZ8-2;F8W0I9;F8VVA6;F8VP44 F8W126 MCRS1 Microspherule protein 1 1 APS(0.521)T(0.479)PVPPSPAPAPGLTKR 60.398 0.023424 9270100 698.77 872.42 1050 915.76 723.86 483.47 471.86 865.03 599.29 801.93 TRUE FALSE 708.5549359 967.6737659 784.9145138 857.0272524 822.4619871 569.2066162 561.3929717 791.5403022 656.8544822 638.4962258 1.109724548 1.51555127 1.22931739 1.342258917 1.28812349 0.891480001 0.879242428 1.239694567 1.028752333 1 9.318534282 -7.200728397 8.119294751 1.01500343 1.308740732 0.543583442 0.132199742 0.265872045 32.95693962 0.043695941 0.043650117 6.30E-08 7.200728397 0.293737302 APSAS(ph)PLALHASR ddPTM_K562_Paclitaxel_30min_R1 2 APSASPLALHASR 13 0 H0Y6J8;Q8N3F8 H0Y6J8 MICALL1 MICAL-like protein 1 1 APS(0.005)AS(0.992)PLALHAS(0.003)R;APS(0.169)AS(0.831)PLALHASR 123.72 0.0011578 36655000 1838.22 2133.47 2343.4 1728.77 2059.25 1993.3 2400.4 3293.5 2474.5 3076.3 TRUE FALSE 1863.960751 2366.40947 1751.779687 1617.89443 2339.754713 2346.783768 2855.863369 3013.696618 2712.186781 2449.348371 0.761002711 0.966138381 0.71520234 0.660540758 0.955255994 0.958125759 1.165968632 1.230407505 1.107309525 1 11.25818227 -7.350736898 1.784111055 1.142278505 0.791657984 0.683905171 0.101740322 0.203732065 1.282411688 0.045018698 0.038542874 4.46E-08 7.350736898 -0.350620521 APSGSSLPSS(ph)PGSNSR ddPTM_K562_Paclitaxel_30min_R1 1 APSGSSLPSSPGSNSR 16 0 Q96Q07-3;Q96Q07-2;Q96Q07 Q96Q07-3 BTBD9 BTB/POZ domain-containing protein 9 1 APS(0.002)GS(0.006)S(0.008)LPS(0.14)S(0.843)PGS(0.001)NSR 85.163 0.016043 7209100 885.85 807.16 1043.4 954.8 969.23 874.25 825.91 841.27 718.99 996.5 TRUE FALSE 898.2546331 895.2884584 779.9807654 893.5634015 1101.255535 1029.285962 982.622111 769.7988625 788.052202 793.412753 1.132140402 1.128401901 0.983070618 1.126227677 1.387998278 1.29728941 1.238475317 0.970237571 0.993243679 1 9.631927777 -8.268193724 24.69051399 0.986305448 1.184761489 0.431360326 0.103632795 517.2478497 1890784.484 0.063888226 0.03181645 5.39E-09 8.268193724 0.198456041 APSLDSSLPQLPS(ph)PSSPGAPLLSNLPR ddPTM_K562_Paclitaxel_30min_R1 1 APSLDSSLPQLPSPSSPGAPLLSNLPR 27 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 APSLDSSLPQLPS(0.959)PS(0.034)S(0.007)PGAPLLSNLPR 115.08 2.28E-11 0 740.16 876.94 1142.8 839.67 567.05 804.74 858.29 1062.5 618.9 1170.3 TRUE FALSE 750.5245236 972.6872748 854.286006 785.8173244 644.2918102 947.4493399 1021.146047 972.2339931 678.3481103 931.7922176 0.805463396 1.043888601 0.916820284 0.843339652 0.69145438 1.016803234 1.095894586 1.043402139 0.728003623 1 9.863864471 APSLT(ph)DLVK ddPTM_K562_Paclitaxel_30min_R1 1 APSLTDLVK 9 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 APS(0.46)LT(0.54)DLVK 115.7 0.0095288 57914000 2915.8 2569.6 5113.3 3385.2 2587.7 2389.1 2181.5 3074.8 2028 4083.3 TRUE FALSE 2956.630196 2850.157618 3822.384175 3168.088424 2940.18855 2812.77334 2595.428237 2813.576548 2222.798461 3251.121219 0.909418627 0.876669132 1.175712598 0.974460259 0.904361404 0.865170245 0.798317892 0.8654173 0.683702117 1 11.66672163 -7.049944369 2.170310298 0.829004234 0.989246713 0.28995174 0.103704609 0.386081754 3.621753295 0.038149311 0.040390913 8.91E-08 7.049944369 0.160242479 APSLT(ph)NDEVEEFR ddPTM_K562_Paclitaxel_30min_R1 1 APSLTNDEVEEFR 13 0 A0A3B3ISR7;E9PIF2;Q13206 A0A3B3ISR7 DDX10 Probable ATP-dependent RNA helicase DDX10 1 APS(0.394)LT(0.606)NDEVEEFR 154.81 0.0017212 64946000 453.29 407.6 739.86 513.34 364.92 414.38 381.86 548.54 466.78 560.82 TRUE FALSE 459.6374585 452.1031464 553.0731925 480.41667 414.6282821 487.8644748 454.3159416 501.9381031 511.6163046 446.5245762 1.029366541 1.012493311 1.238617586 1.075901967 0.928567663 1.092581463 1.017448906 1.124099613 1.145774123 1 8.802595771 -10.39168626 6.715774475 1 1.073066589 0.069935278 0.080770564 0 0 0.080570324 0.019541174 4.06E-11 10.39168626 0.073066589 APSPAPS(ph)SVPLGSEKPSNVSQDR ddPTM_K562_Paclitaxel_30min_R1 2 APSPAPSSVPLGSEKPSNVSQDR 23 1 O75179-4;O75179-6;O75179-2;O75179;H0YM23;O75179-7 O75179-4 ANKRD17 Ankyrin repeat domain-containing protein 17 1 APS(0.001)PAPS(0.847)S(0.152)VPLGSEKPSNVSQDR;APS(0.027)PAPS(0.938)S(0.035)VPLGSEKPSNVSQDR 127.37 1.95E-08 358700000 2342.9 2551.2 4317 2619.1 2145.3 2065.86 1902.86 2705.5 1941.88 3266.5 TRUE FALSE 2375.707828 2829.748644 3227.119958 2451.122649 2437.52618 2432.211265 2263.917751 2475.650888 2128.406251 2600.785507 0.913457808 1.088036148 1.240825108 0.942454748 0.937226916 0.935183335 0.870474611 0.951885836 0.818370544 1 11.34473171 -6.491860274 24.0077175 0.917120394 1.083189505 0.41700245 0.086265226 384.1797786 297347.5369 0.024192838 0.035827218 3.22E-07 6.491860274 0.166069111 APSPS(ph)INR ddPTM_K562_Paclitaxel_30min_R1 1 APSPSINR 8 0 E9PFK9;Q9UJ41;Q9UJ41-4;Q9UJ41-3 E9PFK9 RABGEF1 Rab5 GDP/GTP exchange factor 1 APS(0.205)PS(0.795)INR 95.775 0.015232 6908500 1063.4 1037.2 1420.7 1296.3 962.38 1041.9 986.89 1243.2 892.42 1410.4 TRUE FALSE 1078.290881 1150.445004 1062.026714 1213.16112 1093.472449 1226.666336 1174.147226 1137.5824 978.1409284 1122.959706 0.960222237 1.024475765 0.945738933 1.080324711 0.973741483 1.092351159 1.045582686 1.013021566 0.871038314 1 10.13309045 -8.639680796 9.578397262 0.93588433 1.019351527 0.267050448 0.053922362 0.344382898 27.0361474 0.034951365 0.013143728 2.29E-09 8.639680796 0.083467198 APSPT(ph)AEQPPGGGDSAR ddPTM_K562_Paclitaxel_30min_R1 1 APSPTAEQPPGGGDSAR 17 0 Q15742-2;Q15742-3;Q15742 Q15742-2 NAB2 NGFI-A-binding protein 2 1 APS(0.088)PT(0.912)AEQPPGGGDSAR 116.61 0.00096615 9229100 378.14 358.52 614.94 429.7 311.96 393.9 359.72 338.53 144.77 370.89 TRUE FALSE 383.4351267 397.664426 459.6907915 402.1409653 354.4542335 463.7526344 427.9749921 309.7697635 158.6758053 295.3024144 1.298449007 1.346634523 1.556678067 1.361793692 1.200309297 1.570432925 1.449276983 1.048991638 0.537333248 1 8.206049342 -8.470064414 3.871582448 0.767240131 1.39694342 0.744564578 0.14926162 0.104469686 3.16222255 0.095472244 0.038861 3.39E-09 8.470064414 0.629703289 APSS(ph)LSDAVPQR ddPTM_K562_Paclitaxel_30min_R1 1 APSSLSDAVPQR 12 0 M0R2Z9;Q8IX01-4;Q8IX01;M0R3F6;Q8IX01-3 M0R2Z9 SUGP2 SURP and G-patch domain-containing protein 2 1 APS(0.235)S(0.761)LS(0.004)DAVPQR 98 0.010714 27251000 1966.1 1661 2429.6 1759 1628.9 1326.5 1619.2 2418.3 1897.5 2303.9 TRUE FALSE 1993.631466 1842.353597 1816.217431 1646.185613 1850.783758 1561.73615 1926.434747 2212.85032 2079.763353 1834.363915 1.086824402 1.00435556 0.990107479 0.897414956 1.008951246 0.851377492 1.050192239 1.206331144 1.133779037 1 10.84106417 -7.999765452 24.99999969 1.127685406 0.971645507 0.402825398 0.076530455 7.071626227 753690.6569 0.031826213 0.021225532 1.00E-08 7.999765452 -0.156039899 APT(ph)VEGLY(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 APTVEGLYK 9 0 H7C254 H7C254 ANKMY1 2 APT(1)VEGLY(1)K 58.63 0.027208 0 435.49 294.62 405.22 295.19 333.98 383.65 291.5 291.42 380.97 550.69 TRUE FALSE 441.5882036 326.7876079 302.9171993 276.2578346 379.4737303 451.6849408 346.8106033 266.662052 417.5638707 438.4590757 1.007136648 0.745309257 0.690867668 0.630065267 0.865471264 1.030164423 0.790975994 0.608180026 0.952344002 1 8.776298382 -6.88646109 17.90106906 0.85861337 0.759437087 0.107836224 0.144412924 3.69970249 566.0033597 0.046797045 0.05306342 1.30E-07 6.88646109 -0.099176283 APTAALPQGVVMAAS(ph)PGSLHSPQQLAEEATR ddPTM_K562_Paclitaxel_30min_R1 2 APTAALPQGVVMAASPGSLHSPQQLAEEATR 31 0 E9PAR2;Q03060-22;Q03060-15;Q03060-16;Q03060-31;Q03060-20;Q03060-21;Q03060-32;Q03060-26;Q03060-29;Q03060-7;Q03060-12;G5E998;C9IYM9;C9K092;J3KR46;Q03060;Q03060-6;Q03060-2;Q03060-23;Q03060-9;Q03060-11;Q03060-24;Q03060-27;Q03060-8;E9PB41;Q03060-10;Q03060-28;Q03060-19;Q03060-14;Q03060-13;Q03060-17;Q03060-30;Q03060-1 E9PAR2 CREM cAMP-responsive element modulator 1 APT(0.016)AALPQGVVMAAS(0.739)PGS(0.231)LHS(0.014)PQQLAEEATR;APTAALPQGVVMAAS(0.988)PGS(0.012)LHSPQQLAEEATR 96.022 2.20E-10 76970000 2247.7 1848.25 2182 2377.9 1887.61 1806.82 2213.2 2259.7 2103.2 2808.6 TRUE FALSE 2279.174735 2050.048185 1631.127113 2225.392137 2144.73444 2127.234158 2633.143146 2067.72438 2305.221757 2236.205778 1.019215117 0.916752924 0.72941727 0.995164291 0.959095294 0.951269413 1.177504849 0.924657471 1.030862982 1 11.12683724 -6.892519219 1.666581143 1.021527508 0.896362018 0.221354138 0.094197898 0.545644543 3.119449465 0.035931947 0.043274565 1.28E-07 6.892519219 -0.125165489 APTKEEMS(ph)LRAY(ph)T(ph)ARCR ddPTM_K562_Paclitaxel_30min_R1 1 APTKEEMSLRAYTARCR 17 3 Q8IZT6-2;Q8IZT6 Q8IZT6-2 ASPM Abnormal spindle-like microcephaly-associated protein 3 APT(0.023)KEEMS(0.981)LRAY(0.998)T(0.998)ARCR 46.786 0.0281 122240000 1037.5 1136.4 1315.3 1435.9 1096.3 1377 1409.2 1422.7 1054.1 1414.9 TRUE FALSE 1052.028201 1260.475995 983.2362476 1343.807801 1245.634621 1621.191616 1676.588343 1301.832755 1155.351015 1126.542603 0.933855673 1.118888883 0.872791002 1.19286017 1.105714615 1.439085935 1.488260043 1.155600109 1.025572412 1 10.13768616 -6.400903396 5.313643931 1.22929182 0.990393738 0.281320449 0.161191106 0.296314601 11.62758264 0.04840549 0.072377186 3.97E-07 6.400903396 -0.238898082 APTQTPTQTIILNS(ph)DDETLATLHTALQSSHGVLGPER ddPTM_K562_Paclitaxel_30min_R1 1 APTQTPTQTIILNSDDETLATLHTALQSSHGVLGPER 37 0 Q9H4Z2-2;Q9H4Z2 Q9H4Z2-2 ZNF335 Zinc finger protein 335 1 APTQTPTQT(0.001)IILNS(0.436)DDET(0.436)LAT(0.072)LHT(0.04)ALQS(0.008)S(0.008)HGVLGPER 43.483 0.011616 31616000 456.1 472.38 703.6 537.5 568.69 327.46 669.27 606.26 644.92 855.97 TRUE FALSE 462.4868072 523.9560459 525.967478 503.0271558 646.155206 385.5304332 796.2604887 554.7544288 706.8674476 681.5228441 0.678607931 0.768801883 0.771753262 0.738092876 0.948104985 0.565689671 1.168354804 0.813992419 1.037188194 1 9.412618206 -7.76318497 24.99999816 0.989383193 0.756359321 0.524704352 0.120450417 40.18459317 575497.8975 0.045799952 0.032693627 1.73E-08 7.76318497 -0.233023872 APTVPPPLPPT(ph)PPQPARR ddPTM_K562_Paclitaxel_30min_R1 1 APTVPPPLPPTPPQPARR 18 1 Q9Y3L3;A0A2R8Y5V0 Q9Y3L3 SH3BP1 SH3 domain-binding protein 1 1 APTVPPPLPPT(1)PPQPARR 94.564 0.0019321 15572000 814.38 911 1354.4 1129.2 1246.8 1079.8 908.94 1310.9 852.8 1134.8 TRUE FALSE 825.7838326 1010.466061 1012.464969 1056.778166 1416.635268 1271.287369 1081.40662 1199.530863 934.7152504 903.5271371 0.913955761 1.11835718 1.120569519 1.169614196 1.567894544 1.407027323 1.196872319 1.327609115 1.034518181 1 9.819424122 -5.616992781 1.278793456 1.271651508 0.896600514 0.259399344 0.16226986 1.014530844 2.265288914 0.05146373 0.426630285 2.42E-06 5.616992781 -0.375050994 APVASPAALGS(ph)TATASPAAPAR ddPTM_K562_Paclitaxel_30min_R1 1 APVASPAALGSTATASPAAPAR 22 0 A0A0C4DFM2;Q6ZN55;Q6ZN55-2 A0A0C4DFM2 ZNF574 Zinc finger protein 574 1 APVASPAALGS(0.959)T(0.013)AT(0.003)AS(0.025)PAAPAR 218.42 3.29E-37 8722300 962.76 887.84 914.42 935.78 914.26 1100.2 759.52 619.96 556.79 939.99 TRUE FALSE 976.2416104 984.7773737 683.5633616 875.7632592 1038.797691 1295.305022 903.634955 567.2905283 610.2721673 748.419522 1.304404257 1.315809308 0.913342506 1.170150208 1.387988501 1.730720517 1.207390946 0.757984675 0.815414549 1 9.547703381 -8.177200349 5.283954166 0.841639155 1.297020737 0.500051836 0.198983789 0.196762947 9.188383702 0.106937729 0.060251915 6.65E-09 8.177200349 0.455381582 APVASPAALGSTATAS(ph)PAAPAR ddPTM_K562_Paclitaxel_30min_R1 1 APVASPAALGSTATASPAAPAR 22 0 A0A0C4DFM2;Q6ZN55;Q6ZN55-2 A0A0C4DFM2 ZNF574 Zinc finger protein 574 1 APVASPAALGS(0.027)T(0.08)AT(0.026)AS(0.867)PAAPAR 119.72 5.91E-06 7778800 730.75 734.41 1069.7 936.35 1030.1 734.79 825.1 757.61 788.5 996.91 TRUE FALSE 740.9827546 814.5953674 799.6410051 876.2967019 1170.41706 865.0946895 981.6584177 693.2463016 864.2389481 793.7391948 0.933534289 1.026275851 1.007435453 1.104010874 1.474561251 1.08989791 1.23675185 0.873393057 1.088819796 1 9.632521237 -6.282951821 4.658372163 1.137567719 0.991091534 0.14479788 0.148992197 0.387627655 22.51989483 0.044324155 0.070847543 5.21E-07 6.282951821 -0.146476185 APVHFVEPLS(ph)PTGVAGHR ddPTM_K562_Paclitaxel_30min_R1 3 APVHFVEPLSPTGVAGHR 18 0 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 APVHFVEPLS(0.995)PT(0.005)GVAGHR;APVHFVEPLS(0.975)PT(0.025)GVAGHR;APVHFVEPLS(0.945)PT(0.055)GVAGHR 135.49 1.87E-14 142974000 5865.4 5840.6 6874.3 6518.2 5518.9 5668.8 5195.4 5972.2 5491 6560.3 TRUE FALSE 5947.533696 6478.29646 5138.797945 6100.151826 6270.667616 6674.082086 6181.200028 5464.824333 6018.435084 5223.307259 1.13865285 1.24026716 0.983820727 1.167871527 1.200516704 1.277750237 1.183388172 1.046238343 1.152226891 1 12.35074786 -9.125426765 1.033853376 1.004718463 1.165933126 0.256312512 0.081024627 0.991603507 2.275350766 0.080463779 0.026285223 7.49E-10 9.125426765 0.161214663 APVHFVEPLS(ph)PTGVAGHRK ddPTM_K562_Paclitaxel_30min_R1 1 APVHFVEPLSPTGVAGHRK 19 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 APVHFVEPLS(0.992)PT(0.008)GVAGHRK 67.227 0.0097298 34527000 2379 2242 3061.2 2120.1 1967.8 2063.6 1609.6 2427.8 2291.7 3401.8 TRUE FALSE 2412.31334 2486.789142 2288.3622 1984.126275 2235.847675 2429.550486 1915.013197 2221.543236 2511.828025 2708.511293 0.890641788 0.918138739 0.84487822 0.732552336 0.825489516 0.897005854 0.707035338 0.820208224 0.927383257 1 11.40328439 -8.94188672 3.467345215 0.998482045 0.827951154 0.432083383 0.06409549 0.205090058 5.139582899 0.065380381 0.017374638 1.14E-09 8.94188672 -0.170530891 APVPEPGLDLS(ph)LSPRPDSPQPR ddPTM_K562_Paclitaxel_30min_R1 2 APVPEPGLDLSLSPRPDSPQPR 22 1 Q8TAP8 Q8TAP8 PPP1R35 Protein phosphatase 1 regulatory subunit 35 1 APVPEPGLDLS(0.493)LS(0.493)PRPDS(0.013)PQPR;APVPEPGLDLS(0.492)LS(0.492)PRPDS(0.017)PQPR 60.034 0.014057 309990000 1157.36 1202.12 1392.63 1187.1 1053.19 1286.71 1031.78 1402.96 1179.27 1414.85 TRUE FALSE 1173.566611 1333.371527 1041.043333 1110.964719 1196.652309 1514.889952 1227.554869 1283.769791 1292.544153 1126.502793 1.041778696 1.183638012 0.924137373 0.986206804 1.062271941 1.344772477 1.089704239 1.139606398 1.147395426 1 10.13763518 -7.021786305 24.68613131 1.155599483 1.03522102 0.21258545 0.100735032 956.6380461 1083968.208 0.032913707 0.033205224 9.51E-08 7.021786305 -0.120378463 APVPEPGLDLSLS(ph)PRPDS(ph)PQPR ddPTM_K562_Paclitaxel_30min_R1 1 APVPEPGLDLSLSPRPDSPQPR 22 1 Q8TAP8 Q8TAP8 PPP1R35 Protein phosphatase 1 regulatory subunit 35 2 APVPEPGLDLS(0.349)LS(0.652)PRPDS(0.999)PQPR 64.422 0.012215 66942000 1702.8 1535.9 1706.4 1772.1 1468.4 1307.3 1476.1 2074.1 1473 1936.2 TRUE FALSE 1726.644454 1703.594756 1275.598216 1658.445438 1668.42094 1539.1313 1756.182269 1897.892259 1614.488232 1541.601377 1.120033025 1.105081236 0.827450101 1.075793952 1.082264822 0.99839772 1.1391935 1.231117387 1.047279962 1 10.59021405 -7.768678493 24.98337642 1.12365751 1.032620575 0.097581992 0.096643579 317.5802108 1096009.417 0.040284605 0.027800853 1.70E-08 7.768678493 -0.091036935 APVPEPGLDLSLSPRPDS(ph)PQPR ddPTM_K562_Paclitaxel_30min_R1 2 APVPEPGLDLSLSPRPDSPQPR 22 1 Q8TAP8 Q8TAP8 PPP1R35 Protein phosphatase 1 regulatory subunit 35 1 APVPEPGLDLS(0.011)LS(0.085)PRPDS(0.903)PQPR;APVPEPGLDLS(0.001)LS(0.009)PRPDS(0.99)PQPR 114.75 1.23E-05 831770000 2898.5 2718.5 3911.4 2991.4 2991.4 2942.6 2917.4 3372.1 3032 3680.4 TRUE FALSE 2939.087943 3015.315023 2923.918694 2799.544993 3398.879325 3464.428794 3470.96142 3085.619057 3323.237147 2930.33246 1.00298788 1.029000997 0.99781125 0.955367704 1.159895463 1.182264757 1.184494069 1.052992826 1.134081949 1 11.51684864 -6.764543004 24.9999857 1.12804695 0.998736833 0.526396206 0.056587534 61.97134664 499185.8363 0.017360509 0.020524933 1.72E-07 6.764543004 -0.129310118 APVPSTCSSTFPEELS(ph)PPSHQAK ddPTM_K562_Paclitaxel_30min_R1 2 APVPSTCSSTFPEELSPPSHQAK 23 0 A0A087WY61;Q14980-5;Q14980-2;Q14980;F5H0Z7;F5H763;F5H6Y5;F5H4J1;Q14980-4;Q14980-3 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 APVPSTCSSTFPEELS(0.993)PPS(0.007)HQAK;APVPSTCSSTFPEELS(0.989)PPS(0.01)HQAK 101.58 7.84E-05 310140000 3546.7 3644.9 6508 4771.2 3343.6 3142.6 3720.7 4869.9 3254.8 5775.7 TRUE FALSE 3596.364743 4042.862508 4864.97491 4465.196587 3799.054928 3699.895986 4426.683402 4456.171598 3567.438083 4598.60917 0.78205488 0.879148969 1.057923109 0.970988493 0.82613129 0.804568479 0.962613529 0.969025945 0.775764574 1 12.16698187 -11.31134668 4.893547635 1.000043226 0.898678165 0.108625524 0.091013235 4.48E-05 6.30E-06 0.09189428 0.022278138 4.88E-12 11.31134668 -0.101365061 APVQPQQS(ph)PAAAPGGTDEKPSGK ddPTM_K562_Paclitaxel_30min_R1 2 APVQPQQSPAAAPGGTDEKPSGK 23 1 Q13200;C9JPC0;F8WBS8 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 1 APVQPQQS(1)PAAAPGGTDEKPSGK;APVQPQQS(1)PAAAPGGTDEKPSGK 90.907 0.00020769 36587000 7657.1 5822.4 15778.9 8358.1 6549.5 4814.1 4958.2 8593.8 4313.1 10707.8 TRUE FALSE 7764.323024 6458.109322 11795.32154 7822.048875 7441.652784 5667.813042 5898.992566 7863.703049 4727.392526 8525.544482 0.910712863 0.7575011 1.383527066 0.917483791 0.872865399 0.664803644 0.691919745 0.922369599 0.554497433 1 13.05757626 -6.853224154 2.890865493 0.759029841 1.007444773 0.237665423 0.18993671 0.368304271 6.21971678 0.061994216 0.073456967 1.40E-07 6.853224154 0.248414932 APVSSTESVIQSNT(ph)PT(ph)PPPSQPLNETAEEESR ddPTM_K562_Paclitaxel_30min_R1 1 APVSSTESVIQSNTPTPPPSQPLNETAEEESR 32 0 B5MBZ0;Q9HC35;Q9HC35-2 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 2 APVSSTESVIQS(0.028)NT(0.978)PT(0.986)PPPS(0.007)QPLNETAEEESR 119.64 2.59E-17 12904000 567.2 554.38 815.22 674.45 752.98 500.52 384.21 772.25 531.92 664.16 TRUE FALSE 575.14255 614.9090832 609.4076285 631.1937957 855.5486241 589.2801944 457.1118418 706.6425423 583.0132927 528.8038274 1.087629325 1.162830243 1.15242666 1.193625619 1.61789416 1.114364465 0.864426122 1.336303759 1.102513375 1 9.046588809 -7.495505847 24.98998904 1.087487332 1.244217942 0.175473117 0.173582494 1436.388566 1311348.059 0.063690509 0.05601664 3.20E-08 7.495505847 0.15673061 AQAKT(ph)ASELS(ph)KSMESMRGHLQAQLR ddPTM_K562_Paclitaxel_30min_R1 1 AQAKTASELSKSMESMRGHLQAQLR 25 3 Q5BJF6-9;Q5BJF6-3;Q5BJF6-4;Q5T4C3;Q5BJF6-8;Q5BJF6-5;Q5BJF6-6;Q5BJF6-10;Q5BJF6-7;Q5BJF6-2;Q5BJF6 Q5BJF6-9 ODF2 Outer dense fiber protein 2 2 AQAKT(0.489)AS(0.489)ELS(0.51)KS(0.511)MES(0.002)MRGHLQAQLR 43.198 0.025086 17696000 444.07 470.12 535.24 511.69 478.27 448.33 464.14 561.44 784.03 428.46 TRUE FALSE 450.2883501 521.4492914 400.1120422 478.8724936 543.4184712 527.8350306 552.208142 513.7421676 859.3395846 341.1396168 1.319953262 1.528550968 1.172868886 1.403743424 1.592950348 1.547269812 1.618715959 1.505958682 2.519026059 1 8.414218496 -7.197512933 1.074633534 1.71380219 1.35113207 0.116980536 0.358878338 0.996671296 2.418145331 0.182339532 0.175246001 6.35E-08 7.197512933 -0.362670121 AQAVS(ph)EEEEEEEGKSSSPK ddPTM_K562_Paclitaxel_30min_R1 1 AQAVSEEEEEEEGKSSSPK 19 1 G3V529;Q9GZR7-2;Q9GZR7 G3V529 DDX24 ATP-dependent RNA helicase DDX24 1 AQAVS(1)EEEEEEEGKSSSPK 79.172 0.0055661 17000000 623.75 383.4 1092 624.36 674.49 500.82 360.63 840.81 690.98 1089.9 TRUE FALSE 632.4844244 425.2609086 816.3110943 584.3163441 766.3669572 589.6333951 429.0576599 769.3779423 757.3517164 867.7777817 0.728855287 0.490057383 0.940691398 0.673347897 0.883137335 0.6794751 0.49443264 0.8866071 0.872748453 1 9.761181838 -8.490509247 23.83330361 0.917475575 0.704204955 0.354057384 0.137400291 408.7596108 300967.0257 0.074952822 0.035944949 3.23E-09 8.490509247 -0.213270621 AQDTISRGS(ph)DDSVPVISFK ddPTM_K562_Paclitaxel_30min_R1 1 AQDTISRGSDDSVPVISFK 19 1 F5H7T0;F6RJM5;Q96S38-2;Q96S38;A0A087X1U5 F5H7T0 RPS6KC1 Ribosomal protein S6 kinase delta-1 1 AQDT(0.039)IS(0.082)RGS(0.878)DDS(0.001)VPVISFK 84.829 0.002945 9037200 1138.9 1099 1583.2 1320.3 1091.5 1087.1 969.39 1092.8 1021.8 1556.7 TRUE FALSE 1154.848114 1218.992537 1183.501579 1235.621867 1240.180779 1279.881921 1153.326692 999.959819 1119.948456 1239.443686 0.931747144 0.983499735 0.954865149 0.996916505 1.000594697 1.032626118 0.93051964 0.806781164 0.903589625 1 10.27547701 -7.996515928 23.64851308 0.886841316 0.983323769 0.326823693 0.050871272 47.36002499 321457.5308 0.020621719 0.013812239 1.01E-08 7.996515928 0.096482454 AQEPPAGGGGSIHDLPLFTET(ph)SPTSAPWDPLPGPPPVLPHS(ph)PHSHL ddPTM_K562_Paclitaxel_30min_R1 1 AQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPHSPHSHL 46 0 F8VZ44;Q9NRG9-2;Q9NRG9 F8VZ44 AAAS Aladin 2 AQEPPAGGGGS(0.006)IHDLPLFT(0.075)ET(0.23)S(0.23)PT(0.23)S(0.23)APWDPLPGPPPVLPHS(0.883)PHS(0.117)HL 56.914 1.06E-07 12689000 372.25 642.56 533.18 378.83 279.57 404.22 529.24 531.82 454.82 820.38 TRUE FALSE 377.4626485 712.7168738 398.5721147 354.5335394 317.6521672 475.9027415 629.6605272 486.6385715 498.5074932 653.1861057 0.577879176 1.091139061 0.610196866 0.54277569 0.486311886 0.728586749 0.963983345 0.745022846 0.763193658 1 9.351350293 -7.535721429 23.25703875 0.84672818 0.669195918 0.240621567 0.171419751 182.8473787 331114.4938 0.068892584 0.05341062 2.91E-08 7.535721429 -0.177532262 AQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPHS(ph)PHSHL ddPTM_K562_Paclitaxel_30min_R1 1 AQEPPAGGGGSIHDLPLFTETSPTSAPWDPLPGPPPVLPHSPHSHL 46 0 F8VZ44;Q9NRG9-2;Q9NRG9 F8VZ44 AAAS Aladin 1 AQEPPAGGGGSIHDLPLFTET(0.001)S(0.002)PT(0.006)S(0.006)APWDPLPGPPPVLPHS(0.753)PHS(0.231)HL 60.131 8.65E-08 16670000 478.26 539.48 622.23 437.21 634.54 597.64 522.43 721.35 640.79 797.22 TRUE FALSE 484.9571156 598.3822508 465.1403409 409.1693075 720.9750909 703.6230627 621.5583652 660.066815 702.3407426 634.7461264 0.764017448 0.94271115 0.732797447 0.644618833 1.135847957 1.108510999 0.979223566 1.039891049 1.10649079 1 9.310035875 -6.769221652 24.99935809 1.061875955 0.780567366 0.748168844 0.082528271 94.08605219 302236.3677 0.026826825 0.030978799 1.70E-07 6.769221652 -0.28130859 AQFEGIVTDLIRR ddPTM_K562_Paclitaxel_30min_R1 2 AQFEGIVTDLIRR 13 1 P38646;H0YBG6 P38646 HSPA9 "Stress-70 protein, mitochondrial" 0 ; 157.33 0.00042644 11777700 3613 3452.4 4145.5 3302.6 2848.1 3227.9 3320.1 4009.1 5244 4658.6 FALSE TRUE 3663.593147 3829.344707 3098.917254 3090.786018 3236.059439 3800.322743 3950.071643 3668.501931 5747.709631 3709.174763 0.987711117 1.032398027 0.835473509 0.833281313 0.872447282 1.024573655 1.06494622 0.989034533 1.549592564 1 11.85688253 -8.191467219 1.486858494 1.236262026 0.921900926 0.369519879 0.153914271 0.434101242 1.749391269 0.116061921 0.047119532 6.43E-09 8.191467219 -0.314361101 AQGEPVAGHES(ph)PKIPYEK ddPTM_K562_Paclitaxel_30min_R1 4 AQGEPVAGHESPKIPYEK 18 1 H7BXG7;D6REX3;O94979-7;O94979-6;O94979-3;O94979-10;O94979-4;O94979-9;O94979-2;O94979;O94979-8;H0YAB3;D6RHZ5 H7BXG7 SEC31A Protein transport protein Sec31A 1 AQGEPVAGHES(0.973)PKIPY(0.027)EK;AQGEPVAGHES(0.999)PKIPY(0.001)EK;AQGEPVAGHES(0.976)PKIPY(0.024)EK;AQGEPVAGHES(0.999)PKIPY(0.001)EK 84.859 0.0035043 623290000 21055.6 14005.9 45896.1 21924.1 15232.3 12679.9 12096.3 20692.7 19421.7 28011.6 TRUE FALSE 21350.44336 15535.11153 34309.06192 20517.98635 17307.19714 14928.50223 14391.50978 18934.72598 21287.24106 22302.82054 0.957297904 0.696553671 1.538328385 0.919972714 0.776009344 0.669354901 0.645277567 0.84898347 0.954464079 1 14.44493855 -6.52041838 24.61210303 0.797357488 1.060949509 0.2024021 0.219043145 120.7471457 1207895.326 0.06547746 0.086092639 3.02E-07 6.52041838 0.263592021 AQGQESDS(ph)SETSVR ddPTM_K562_Paclitaxel_30min_R1 2 AQGQESDSSETSVR 14 0 Q03164-2;Q03164;Q03164-3;H7C5W4;A0A3B3ITZ1;E9PR05 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 AQGQES(0.092)DS(0.785)S(0.069)ET(0.053)S(0.001)VR;AQGQES(0.305)DS(0.692)S(0.002)ET(0.001)SVR 200 4.10E-09 9024700 1724.33 1653.84 2891.8 2448.3 1652.13 1440.47 1747.68 1884.1 1353.02 2276.6 TRUE FALSE 1748.47594 1834.411844 2161.729325 2291.276996 1877.178077 1695.917129 2079.293156 1724.033945 1482.983616 1812.62767 0.964608435 1.012018008 1.192594243 1.264063786 1.035611509 0.935612513 1.147115423 0.951124146 0.818140229 1 10.8238669 -8.430644738 5.330496864 0.90128441 1.079954615 0.322734695 0.104240644 0.262480279 11.60812119 0.064237455 0.029425507 3.71E-09 8.430644738 0.178670205 AQGVRS(ph)PLLR ddPTM_K562_Paclitaxel_30min_R1 2 AQGVRSPLLR 10 1 A0A3B3IRT3;O60343-2;O60343-3;O60343;Q5JU47 A0A3B3IRT3 TBC1D4 TBC1 domain family member 4 1 AQGVRS(1)PLLR;AQGVRS(1)PLLR 78.705 0.027592 78415000 4177.9 3119 4461 3865.7 3245 3076.2 3099.5 3922.7 3898.9 4564.7 TRUE FALSE 4236.40349 3459.542968 3334.765377 3617.771304 3687.023938 3621.720878 3687.613945 3589.44215 4273.406766 3634.411634 1.165636674 0.951885289 0.917553022 0.995421451 1.014476154 0.996508168 1.014638493 0.98762675 1.17581804 1 11.82750611 -8.716769947 24.99998884 1.08791019 1.000723962 0.169081272 0.072494836 181.2780199 101455.3081 0.047170819 0.017828695 1.92E-09 8.716769947 -0.087186228 AQHPQPAGQQGHGAS(ph)PHTGLPAGSLR ddPTM_K562_Paclitaxel_30min_R1 2 AQHPQPAGQQGHGASPHTGLPAGSLR 26 0 I3L229;H7C0J3 I3L229 CHD3 1 AQHPQPAGQQGHGAS(0.981)PHT(0.015)GLPAGS(0.004)LR;AQHPQPAGQQGHGAS(0.799)PHT(0.172)GLPAGS(0.029)LR 72.949 0.00021815 68636000 4379.8 4439.8 6063.7 5091.6 4758.9 4437.6 3928.3 5102.5 4322.4 4974.3 TRUE FALSE 4441.130713 4924.552378 4532.84394 4765.047565 5407.142749 5224.546053 4673.674418 4669.010776 4737.585833 3960.53493 1.12134618 1.24340587 1.144502957 1.203132317 1.365255665 1.319151616 1.180061406 1.178883878 1.196198472 1 11.95147959 -9.520229089 0.992784174 0.999864061 1.228331097 0.465148865 0.070638674 1.857288362 2.646884082 0.075376908 0.023808981 3.02E-10 9.520229089 0.228467035 AQIHDLVLVGGSTR ddPTM_K562_Paclitaxel_30min_R1 2 AQIHDLVLVGGSTR 14 0 A0A0G2JIW1;P0DMV8-2;P0DMV9;P0DMV8;V9GZ37 A0A0G2JIW1 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B 0 ; 100.4 0.014201 15642600 2723.1 2615.6 3622.7 2487.2 2742.7 2491.7 2490.3 3034.3 2564.8 3430.5 FALSE TRUE 2761.231801 2901.180053 2708.10458 2327.682124 3116.302174 2933.56801 2962.821425 2776.517275 2811.1605 2731.362217 1.010935783 1.062173312 0.991484968 0.852205581 1.140933324 1.074031116 1.084741308 1.016532065 1.029215562 1 11.41540493 -6.792726255 24.99999764 1.060583166 0.986003655 0.275336792 0.061782552 294.021755 234938.5779 0.020035612 0.022720417 1.61E-07 6.792726255 -0.074579511 AQIWDTAGQER ddPTM_K562_Paclitaxel_30min_R1 1 AQIWDTAGQER 11 0 H3BMH2;H3BSC1;P62491-2;Q15907-2;P62491;Q15907 H3BMH2 RAB11A;RAB11B Ras-related protein Rab-11A;Ras-related protein Rab-11B 0 115 0.02879 6613300 1084.6 887.81 1613.8 1406.6 987.59 1207.8 753.7 941.74 1140.1 1244.3 FALSE TRUE 1099.787746 984.7440982 1206.376231 1316.386972 1122.116478 1421.986372 896.7106404 861.7333088 1249.611699 990.710977 1.110099486 0.993977175 1.217687357 1.328729571 1.132637575 1.435319084 0.905118305 0.869813022 1.261328206 1 9.952320427 -11.17031407 4.886447196 0.999987935 1.136688571 0.055937041 0.171491414 2.35E-05 3.99E-06 0.1731527 0.041991993 6.76E-12 11.17031407 0.136700636 AQLKSEAAGSPDQGS(ph)TYSPAR ddPTM_K562_Paclitaxel_30min_R1 1 AQLKSEAAGSPDQGSTYSPAR 21 1 Q96S66-4;Q96S66-3;Q96S66-2;Q96S66 Q96S66-4 CLCC1 Chloride channel CLIC-like protein 1 1 AQLKSEAAGS(0.001)PDQGS(0.3)T(0.3)Y(0.101)S(0.3)PAR 70.504 0.0054588 19604000 1056.5 974.3 2223.8 1216 964.15 1166.6 869.05 974.82 1636 1469 TRUE FALSE 1071.29426 1080.677369 1662.374186 1138.011203 1095.483553 1373.48013 1033.947701 892.0029564 1793.14511 1169.616994 0.915935956 0.923958334 1.421297908 0.972977657 0.936617336 1.174299055 0.884005368 0.762645346 1.533104529 1 10.19182046 -5.57810574 24.99985445 1.071021323 0.917909526 0.076531352 0.225760159 218.9908455 99130.34124 0.056182726 0.148645572 2.64E-06 5.57810574 -0.153111797 AQLKSEAAGSPDQGSTYS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 2 AQLKSEAAGSPDQGSTYSPAR 21 1 Q96S66-4;Q96S66-3;Q96S66-2;Q96S66 Q96S66-4 CLCC1 Chloride channel CLIC-like protein 1 1 AQLKSEAAGSPDQGS(0.055)T(0.055)Y(0.003)S(0.886)PAR;AQLKSEAAGSPDQGS(0.051)T(0.235)Y(0.005)S(0.709)PAR 112.74 3.87E-05 45125000 4144.1 3482.4 6695.2 4584.1 3478.5 3605.3 2772.6 4752.7 5960.9 4924.6 TRUE FALSE 4202.130186 3862.620209 5004.913955 4290.096344 3952.330591 4244.649334 3298.686376 4348.92847 6533.471079 3920.963817 1.071708483 0.985120085 1.276449921 1.094143314 1.007999761 1.082552539 0.841294776 1.10914782 1.666292112 1 11.93699261 -8.548167188 24.99956936 1.351337698 1.052661194 0.273207921 0.180810708 262.4079123 259405.1502 0.114451812 0.043261734 2.83E-09 8.548167188 -0.298676505 AQLS(ph)PGIYDDTSAR ddPTM_K562_Paclitaxel_30min_R1 2 AQLSPGIYDDTSAR 14 0 O75376-2;O75376;A0A088AWL3;E7EVK1 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 AQLS(0.999)PGIYDDT(0.001)SAR;AQLS(0.994)PGIYDDT(0.006)SAR 222.09 1.03E-25 343590000 4177.7 3974.5 5772.2 4574.6 4242.9 3948.6 3880.4 4984.6 4582.3 5179.8 TRUE FALSE 4236.200689 4408.449351 4314.93672 4281.205631 4820.854813 4648.828769 4616.685643 4561.127117 5022.450389 4124.153917 1.027168426 1.068934244 1.046259865 1.038080954 1.168931837 1.127219998 1.119426126 1.10595463 1.217813518 1 12.00988246 -6.747255668 24.995043 1.128531954 1.04689459 0.343250843 0.052603367 250.5426132 441513.3317 0.014566695 0.018715135 1.79E-07 6.747255668 -0.081637364 AQLS(ph)PGIYDDTSARR ddPTM_K562_Paclitaxel_30min_R1 1 AQLSPGIYDDTSARR 15 1 O75376-2;O75376;A0A088AWL3;E7EVK1 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 AQLS(0.998)PGIYDDT(0.001)S(0.001)ARR 79.383 0.01716 22336000 1081 835.63 1245 999.64 918.53 815.66 932.79 1010.7 967.46 1120.3 TRUE FALSE 1096.137335 926.8669093 930.684352 935.5275646 1043.649337 960.3058486 1109.782033 924.8347264 1060.388856 891.9822451 1.228877975 1.039109146 1.043388876 1.048818595 1.170033756 1.076597493 1.244175026 1.036830869 1.188800407 1 9.800871183 -5.243337357 23.82659914 1.0988471 1.228878186 0.218962928 0.075853967 3274.341295 4309691.196 0.01826598 0.540481008 5.71E-06 5.243337357 0.130031087 AQLYLPS(ph)TSPPHEGLDGFAQELSR ddPTM_K562_Paclitaxel_30min_R1 2 AQLYLPSTSPPHEGLDGFAQELSR 24 0 Q8N137-5;Q8N137;Q8N137-3;Q8N137-2;I3L465;I3L1Z8;I3L1A6;Q8N137-4 Q8N137-5 CNTROB Centrobin 1 AQLY(0.004)LPS(0.4)T(0.298)S(0.298)PPHEGLDGFAQELSR;AQLY(0.001)LPS(0.561)T(0.429)S(0.009)PPHEGLDGFAQELSR 90.534 0.00014298 28242300 3077.5 3031.99 3026.4 3210.1 2133.88 2623.89 3857.4 5065.7 4074.6 5684.3 TRUE FALSE 3120.594495 3363.032922 2262.34789 3004.218554 2424.550583 3089.20005 4589.321513 4635.337166 4465.983536 4525.83654 0.689506673 0.743074323 0.499873972 0.663792987 0.535713246 0.682569957 1.014027235 1.024194561 0.986775262 1 12.14396876 -7.722979425 4.684739109 1.010626632 0.626931427 0.880740653 0.066972295 0.063703487 3.1524221 0.027476325 0.020231702 1.89E-08 7.722979425 -0.383695204 AQLYLPSTS(ph)PPHEGLDGFAQELSR ddPTM_K562_Paclitaxel_30min_R1 2 AQLYLPSTSPPHEGLDGFAQELSR 24 0 Q8N137-5;Q8N137;Q8N137-3;Q8N137-2;I3L465;I3L1Z8;I3L1A6;Q8N137-4 Q8N137-5 CNTROB Centrobin 1 AQLY(0.007)LPS(0.34)T(0.266)S(0.388)PPHEGLDGFAQELSR;AQLY(0.005)LPS(0.317)T(0.317)S(0.362)PPHEGLDGFAQELSR 80.868 0.00020334 25514000 2383.36 2973.93 2674.2 2543.4 2084.04 2414.72 3249.62 4209.33 3796.7 5220.2 TRUE FALSE 2416.734393 3298.633735 1999.065136 2380.277708 2367.921531 2842.936688 3866.218431 3851.721143 4161.389999 4156.320375 0.581460084 0.793642799 0.480969934 0.572688699 0.569715835 0.68400326 0.930202218 0.926714208 1.001219739 1 12.02109115 -7.721159005 2.77028251 0.969250997 0.602562759 0.839574195 0.076009512 0.107492905 1.684227605 0.034806481 0.024196786 1.90E-08 7.721159005 -0.366688238 AQPFGFIDSDT(ph)DAEEERIPATPVVIPMK ddPTM_K562_Paclitaxel_30min_R1 1 AQPFGFIDSDTDAEEERIPATPVVIPMK 28 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 AQPFGFIDS(0.052)DT(0.944)DAEEERIPAT(0.004)PVVIPMK 63.109 0.0093355 64629000 1184.4 1007 2226.9 1388.1 1157.7 926.84 1070.6 1664.3 1523.6 1347.4 TRUE FALSE 1200.985254 1116.947665 1664.691553 1299.073479 1315.39834 1091.202061 1273.740761 1522.907327 1669.948588 1072.79914 1.119487525 1.041152648 1.55172715 1.210919575 1.226136646 1.017154115 1.187305911 1.419564268 1.556627448 1 10.06716427 -8.251503821 23.38186518 1.366071892 1.196490017 0.080017944 0.190464392 563.5860276 1326323.533 0.090960326 0.051597431 5.60E-09 8.251503821 -0.169581875 AQPS(ph)MSPK ddPTM_K562_Paclitaxel_30min_R1 1 AQPSMSPK 8 0 Q969S3 Q969S3 ZNF622 Zinc finger protein 622 1 AQPS(0.866)MS(0.134)PK 99.788 0.014377 58602000 5932.7 4543 9008.6 5439.1 4724.8 4637.5 3677.4 5774.8 6154.9 7720.6 TRUE FALSE 6015.776104 5039.020103 6734.267513 5090.260471 5368.397752 5459.895511 4375.167453 5284.194695 6746.105646 6147.137482 0.97863048 0.819734408 1.095512754 0.828070055 0.873316689 0.888201301 0.711740622 0.859618759 1.09743855 1 12.58569904 -8.755436804 24.9990836 1.048719297 0.879368354 0.316485391 0.098035708 154.6313533 644017.8653 0.070754876 0.025186632 1.76E-09 8.755436804 -0.169350943 AQPSMS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 AQPSMSPK 8 0 Q969S3 Q969S3 ZNF622 Zinc finger protein 622 1 AQPS(0.028)MS(0.972)PK 90.913 0.015669 49625000 5230.5 4059.3 8161.2 6086.3 4057.7 4153 3712.5 5288.6 5694.7 6188 TRUE FALSE 5303.743137 4502.508102 6100.804124 5695.951959 4610.427437 4889.476239 4416.927494 4839.30042 6241.70138 4926.882203 1.076490754 0.913865588 1.238268721 1.15609664 0.935769772 0.992407782 0.896495453 0.98222369 1.266866371 1 12.26645926 -6.759061069 24.99997637 1.00462081 1.093307093 0.103257894 0.119714202 153.9531739 1618287.618 0.037407692 0.045992603 1.74E-07 6.759061069 0.088686283 AQPYDPNFYDETYDYGGFTMMFDDRR ddPTM_K562_Paclitaxel_30min_R1 1 AQPYDPNFYDETYDYGGFTMMFDDRR 26 1 Q5T6W2;P61978-3;P61978;P61978-2 Q5T6W2 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 62.765 0.005608 7161000 820.71 945.74 1174 883.06 613.4 718.58 684.81 1243.9 675.34 880.96 FALSE TRUE 832.2024721 1048.999091 877.6091802 826.424484 696.9554649 846.0100736 814.7491226 1138.222931 740.2094245 701.4198684 1.186454091 1.495536609 1.251189508 1.178216531 0.993635191 1.206139306 1.161571206 1.622741217 1.055301479 1 9.454134487 -5.990277823 24.68373009 1.194857978 1.34908732 0.111976256 0.181777199 406.7552275 1032694.446 0.047614462 0.098913318 1.02E-06 5.990277823 0.154229342 AQQCVS(ph)PSSSLCR ddPTM_K562_Paclitaxel_30min_R1 1 AQQCVSPSSSLCR 13 0 B9EGE7;Q8TCN5-2;Q8TCN5 B9EGE7 ZNF507 Zinc finger protein 507 1 AQQCVS(0.974)PS(0.025)S(0.001)SLCR 175.01 0.00012718 25753000 948.15 1059.9 961.31 1098 937.47 930.52 839.43 1079.4 897.91 894.54 TRUE FALSE 961.4270253 1175.623466 718.6154012 1027.579194 1065.169285 1095.534657 998.7074604 987.6982326 984.1582675 712.232257 1.34987852 1.650618116 1.008962167 1.442758573 1.495536428 1.538170514 1.402221608 1.386764251 1.381794011 1 9.476203967 -9.708473996 1.381582335 0.999759575 1.413112813 0.376320919 0.157354318 6.330141047 11.23065471 0.151870786 0.0440294 1.96E-10 9.708473996 0.413353238 AQQELEEQTRR ddPTM_K562_Paclitaxel_30min_R1 2 AQQELEEQTRR 11 1 P26038 P26038 MSN Moesin 0 ; 126.71 0.002343 103325000 3254.8 3134.9 3685.4 3581.4 2815.6 2616.2 3079.9 3649.4 3093.4 3097.5 FALSE TRUE 3300.377242 3477.178984 2754.97519 3351.705034 3199.132389 3080.146337 3664.294947 3339.360691 3390.534892 2466.2278 1.33822887 1.409918007 1.117080583 1.359041137 1.297176355 1.248930183 1.485789329 1.354035784 1.374785773 1 11.26809035 -11.13181845 4.979297689 0.999984302 1.330203807 0.531840677 0.093343687 1.64E-05 2.86E-06 0.090976733 0.02206405 7.38E-12 11.13181845 0.330219505 AQQELVPPQQQAS(ph)PPQLPK ddPTM_K562_Paclitaxel_30min_R1 2 AQQELVPPQQQASPPQLPK 19 0 F1T0I1;O15027-2;O15027-4;O15027-3;O15027;O15027-5;A0A3F2YNX0;A0A3F2YNZ0 F1T0I1 SEC16A Protein transport protein Sec16A 1 AQQELVPPQQQAS(1)PPQLPK;AQQELVPPQQQAS(1)PPQLPK 82.475 0.0039788 29466000 4735.5 4377 8146.5 5869 4653.5 4205.7 4107.8 5901.7 5863.9 6774.4 TRUE FALSE 4801.81161 4854.895662 6089.81532 5492.588609 5287.385484 4951.521844 4887.233606 5400.313748 6427.153796 5393.773561 0.890250871 0.900092599 1.129045417 1.018320207 0.980275761 0.918006992 0.90608802 1.001212544 1.191587619 1 12.39707924 -8.542747085 22.34758471 1.09599645 0.96711718 0.299504221 0.079941063 93.60024973 105272.6383 0.055800907 0.02110237 2.87E-09 8.542747085 -0.12887927 AQRVPS(ph)PGPPTLTSYSVLR ddPTM_K562_Paclitaxel_30min_R1 1 AQRVPSPGPPTLTSYSVLR 19 1 F8W130;Q12815;F8W1U0 F8W130 TROAP Tastin 1 AQRVPS(1)PGPPTLTSYSVLR 85.7 0.0026216 40564000 867.74 720.36 1124.3 1127.6 1015.4 1023.6 1118 1275.2 1425.8 1428.5 TRUE FALSE 879.8910372 799.0113409 840.4565598 1055.280783 1153.714671 1205.121088 1330.134664 1166.8638 1562.754461 1137.370916 0.773618373 0.702507273 0.738946766 0.92782466 1.014369767 1.059567351 1.169481868 1.025930753 1.374005998 1 10.1514871 -6.669048042 1.097722575 1.142633792 0.713109621 0.744240904 0.098787858 0.238925174 0.605765305 0.039466913 0.065998509 2.14E-07 6.669048042 -0.42952417 AQS(ph)LLSTDR ddPTM_K562_Paclitaxel_30min_R1 1 AQSLLSTDR 9 0 J3QRY4;O00231;O00231-2 J3QRY4 PSMD11 26S proteasome non-ATPase regulatory subunit 11 1 AQS(1)LLSTDR 98.156 0.011976 7461800 989.21 739.96 1117.3 984.63 918.44 698.53 836.1 1019.1 800.38 1387.3 TRUE FALSE 1003.061992 820.7513352 835.2237964 921.4802388 1043.547077 822.4044877 994.7456103 932.521094 877.2600752 1104.567498 0.908103845 0.743052223 0.756154601 0.834245295 0.944756277 0.744548874 0.90057476 0.844240932 0.794211378 1 10.10926587 -15 0.30749728 2.485271348 0.820645029 0.352050443 0.068340672 325.5316743 2.973531867 312.8629855 0.065939442 1.00E-15 15 -1.664626319 AQS(ph)PGAVEEILDR ddPTM_K562_Paclitaxel_30min_R1 2 AQSPGAVEEILDR 13 0 H7BXT7;E9PHY4;A0A0C4DH16;B8ZZS0;Q9NYM9 H7BXT7 BET1L BET1-like protein 1 AQS(1)PGAVEEILDR;AQS(1)PGAVEEILDR 193.54 4.39E-05 72364000 3466.8 2897.9 4337.9 3928.1 3091.6 2798.4 3361.4 3936.6 2144.99 3542.1 TRUE FALSE 3515.345896 3214.302522 3242.743495 3676.169248 3512.728261 3294.656949 3999.208102 3602.161259 2351.025874 2820.218076 1.246480166 1.139735452 1.149820123 1.303505314 1.245551999 1.168227726 1.418049241 1.277263375 0.833632652 1 11.46159101 -8.756248025 24.998147 0.916816273 1.242359694 0.696944988 0.086186438 65.09528946 313467.7939 0.064563485 0.022754467 1.75E-09 8.756248025 0.32554342 AQS(ph)PGAVEEILDRENKR ddPTM_K562_Paclitaxel_30min_R1 2 AQSPGAVEEILDRENKR 17 2 H7BXT7;E9PHY4;A0A0C4DH16;B8ZZS0;Q9NYM9 H7BXT7 BET1L BET1-like protein 1 AQS(1)PGAVEEILDRENKR;AQS(1)PGAVEEILDRENKR 69.256 0.016088 103664000 5588.89 4589.95 9059.6 5954.3 4206.26 3914.78 3360.72 5384.82 6235.9 6875 TRUE FALSE 5667.151703 5091.096263 6772.391932 5572.417848 4779.223825 4609.011267 3998.399076 4927.34593 6834.886058 5473.871226 1.03530965 0.930072348 1.237221639 1.018003095 0.873097599 0.842002136 0.730451797 0.900157444 1.248638445 1 12.41834578 -6.6100785 5.645705209 0.913700284 1.065175413 0.145790613 0.144613626 0.367437087 18.59289302 0.044821616 0.058250917 2.45E-07 6.6100785 0.151475129 AQS(ph)PVSGPNVAHLTDGATLNDR ddPTM_K562_Paclitaxel_30min_R1 1 AQSPVSGPNVAHLTDGATLNDR 22 0 Q5THJ4-2;Q5THJ4 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 AQS(0.979)PVS(0.021)GPNVAHLTDGATLNDR 125.42 9.85E-08 42503000 881.15 580.39 869.42 764.79 590.66 727.82 615.67 769.33 884.32 738.46 TRUE FALSE 893.4888186 643.758943 649.9241681 715.7397925 671.117892 856.8886579 732.4901685 703.9706145 969.2628872 587.9614467 1.519638445 1.094899923 1.105385688 1.217324361 1.141431799 1.457389192 1.245813263 1.19730744 1.648514359 1 9.199577749 -7.232936971 24.97087711 1.318137148 1.202980594 0.05293139 0.193663227 1980.624697 1735221.506 0.061260544 0.061247686 5.85E-08 7.232936971 -0.115156553 AQS(ph)SPAAPASLSAPEPASQAR ddPTM_K562_Paclitaxel_30min_R1 1 AQSSPAAPASLSAPEPASQAR 21 0 J3KPH8;Q8WUI4-3;Q8WUI4-4;Q8WUI4;Q8WUI4-7;Q8WUI4-6;Q8WUI4-5;Q8WUI4-8;Q8WUI4-10;H0YI15 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 AQS(0.984)S(0.016)PAAPASLSAPEPASQAR 154.84 1.34E-17 72887000 459.99 490.38 578.21 671.77 634.7 487.49 386.33 453.01 757.24 674.07 TRUE FALSE 466.4312792 543.9213468 432.2337343 628.6856789 721.1568856 573.9395068 459.6341007 414.5239729 829.9762854 536.694164 0.869082078 1.01346611 0.805363209 1.171403978 1.343701747 1.069397704 0.856417177 0.772365345 1.546460426 1 9.06795639 -6.266603949 24.79672314 1.09671338 0.90772003 0.167387963 0.215650167 800.3053469 3842520.514 0.062162567 0.095420823 5.41E-07 6.266603949 -0.18899335 AQS(ph)TDSLGTSGSLQSK ddPTM_K562_Paclitaxel_30min_R1 2 AQSTDSLGTSGSLQSK 16 0 I3L456;Q15276-2;Q15276 I3L456 RABEP1 Rab GTPase-binding effector protein 1 1 AQS(0.886)T(0.112)DS(0.001)LGTSGSLQSK;AQS(0.833)T(0.167)DSLGTSGSLQSK 153.21 2.62E-07 8132300 3471.6 3149.38 6418.7 3956.1 2922.99 2921.7 2734.9 3331.71 2895.5 4669 TRUE FALSE 3520.213111 3493.239959 4798.2198 3702.373453 3321.150725 3439.822472 3253.832998 3048.66044 3173.625712 3717.455237 0.946941627 0.939685816 1.290726988 0.995942982 0.893393602 0.925316447 0.875285051 0.820093382 0.853709194 1 11.86009966 -6.657536271 4.249892581 0.886081669 1.060415455 0.350667888 0.100709034 0.237535234 7.684546267 0.0314462 0.040881889 2.20E-07 6.657536271 0.174333786 AQSAGSDQESHGAQS(ph)PLGEGQNMAVLSAGDPDPSR ddPTM_K562_Paclitaxel_30min_R1 1 AQSAGSDQESHGAQSPLGEGQNMAVLSAGDPDPSR 35 0 E5RH37;E9PBN4;F8W7M8;Q9P243-4;Q9P243-2;Q9P243;Q9P243-3 E5RH37 ZFAT Zinc finger protein ZFAT 1 AQSAGSDQES(0.001)HGAQS(0.999)PLGEGQNMAVLSAGDPDPSR 88.563 1.48E-09 13042000 423.02 325.77 503.22 375.31 411.95 345.17 229.97 495.49 400.09 512.94 TRUE FALSE 428.9435851 361.3386703 376.1758873 351.2392964 468.0645644 406.3810531 273.605607 453.3950317 438.5204321 408.4025464 1.050296059 0.884761061 0.921090945 0.860032092 1.146086302 0.995050243 0.669940992 1.110167005 1.073745587 1 8.673848051 AQSGS(ph)DSSPEPKAPAPR ddPTM_K562_Paclitaxel_30min_R1 1 AQSGSDSSPEPKAPAPR 17 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 AQS(0.032)GS(0.425)DS(0.272)S(0.272)PEPKAPAPR 80.362 0.01106 10808000 2033.6 1410.5 3167 2093.5 1623.2 1692.9 1230.4 1850.7 3764.5 2580.2 TRUE FALSE 2062.076674 1564.50316 2367.451681 1959.23228 1844.307321 1993.112046 1463.861977 1693.471483 4126.097045 2054.353824 1.00375926 0.76155487 1.152406978 0.953697585 0.89775544 0.970189274 0.712565654 0.824332919 2.008464656 1 11.00446896 -8.730980793 24.99999864 1.504233553 0.909231686 0.465367682 0.254968514 137.4393781 112808.83 0.158046607 0.059720683 1.86E-09 8.730980793 -0.595001867 AQSGSDS(ph)SPEPK ddPTM_K562_Paclitaxel_30min_R1 2 AQSGSDSSPEPK 12 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 AQS(0.002)GS(0.01)DS(0.494)S(0.494)PEPK;AQS(0.012)GS(0.073)DS(0.458)S(0.458)PEPK 81.703 0.026912 0 4280 3507.4 7194.4 4097.1 3798.9 3587.5 2939.7 4530.7 3071.1 5398.4 TRUE FALSE 4339.933205 3890.349793 5378.084741 3834.330344 4316.374496 4223.692754 3497.492729 4145.788755 3366.092877 4298.203117 1.009708729 0.905110738 1.25124025 0.892077512 1.004227669 0.982664765 0.813710435 0.964539982 0.783139555 1 12.06951795 -7.596895817 6.97388894 0.887727806 1.011211454 0.221637003 0.108658053 0.335212935 25.98205219 0.04017784 0.031027804 2.53E-08 7.596895817 0.123483648 AQSGSDS(ph)SPEPKAPAPR ddPTM_K562_Paclitaxel_30min_R1 1 AQSGSDSSPEPKAPAPR 17 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 AQS(0.174)GS(0.151)DS(0.523)S(0.151)PEPKAPAPR 67.396 0.026229 15850000 1619.2 1267.5 2515.2 1635.1 1197.9 1440.5 1030.7 1954.3 2935.7 1933.9 TRUE FALSE 1641.873796 1405.889936 1880.206652 1530.232004 1361.074261 1695.952449 1226.269944 1788.270017 3217.687102 1539.770118 1.066310988 0.913051838 1.221095688 0.993805495 0.883946405 1.101432239 0.796398066 1.161387661 2.089719149 1 10.58849926 -8.539177512 24.86253102 1.571757955 0.999972807 0.393390738 0.268566407 197.8875618 301856.0253 0.163274999 0.06174908 2.89E-09 8.539177512 -0.571785148 AQSLVIS(ph)PPAPSPR ddPTM_K562_Paclitaxel_30min_R1 1 AQSLVISPPAPSPR 14 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 AQSLVIS(0.979)PPAPS(0.021)PR 136.57 2.09E-05 68395000 1449.2 1349.6 1641.9 1480 1241 1308.7 1307.6 1593.3 1611.7 1855.8 TRUE FALSE 1469.493271 1496.953892 1227.382038 1385.079424 1410.04521 1540.77957 1555.710274 1457.93922 1766.510986 1477.586941 0.994522373 1.013107148 0.830666544 0.937392843 0.954289166 1.042767452 1.052872241 0.986702832 1.195537763 1 10.52902731 -7.267341337 3.131084491 1.057075705 0.940865516 0.388335142 0.069034652 0.28257315 5.707095373 0.025412339 0.023542807 5.40E-08 7.267341337 -0.116210189 AQSLVISPPAPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 AQSLVISPPAPSPR 14 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 AQSLVISPPAPS(1)PR;AQSLVISPPAPS(1)PR;AQSLVIS(0.001)PPAPS(0.999)PR;AQSLVIS(0.002)PPAPS(0.998)PR 170.48 8.26E-06 2782020000 4330.22 4202.23 4202.91 4976.59 4277.11 3977.78 3795.95 4691.27 4009.84 5388.38 TRUE FALSE 4390.85644 4661.043682 3141.83339 4657.413792 4859.724794 4683.183432 4516.211696 4292.717332 4395.003048 4290.225198 1.023455935 1.086433338 0.732323653 1.085587254 1.13274352 1.091593848 1.05267474 1.000580886 1.024422459 1 12.06683766 AQSNGSGNGS(ph)DSEMDTSSLER ddPTM_K562_Paclitaxel_30min_R1 2 AQSNGSGNGSDSEMDTSSLER 21 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 AQSNGSGNGS(0.891)DS(0.089)EMDT(0.018)S(0.001)SLER;AQSNGSGNGS(0.973)DS(0.027)EMDTSSLER 254.11 8.49E-93 77656000 1644.98 1574.95 1950.07 1499.43 1197.73 1282.32 1201.92 1586.83 1387.07 1259.27 TRUE FALSE 1668.014795 1746.908367 1457.75071 1403.263271 1360.881104 1509.721447 1429.978046 1452.018887 1520.304271 1002.630083 1.663639286 1.742325906 1.453926763 1.399582254 1.357311263 1.505761171 1.426226951 1.448209975 1.516316234 1 9.969573711 -13.57590041 0.130111012 6.78E-25 1.712664 0.686215569 0.105215947 62.80298325 0.739453563 18.60036136 0.977133069 2.66E-14 13.57590041 1.712664 AQSPSYVISTGVSPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 AQSPSYVISTGVSPSR 16 0 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 AQSPSYVISTGVS(0.002)PS(0.998)R 161.75 1.39E-40 0 913.23 865.45 1799.2 1127.6 900.54 816.26 857.7 1315.1 853.14 1173.6 TRUE FALSE 926.0180376 959.9427578 1344.969708 1055.280783 1023.208794 961.0122501 1020.444098 1203.374046 935.0879089 934.4196758 0.99100871 1.027314367 1.439363642 1.129343496 1.0950206 1.02845892 1.092061869 1.28783038 1.000715132 1 9.867926843 -6.521359164 24.91185441 1.09749889 1.164090113 0.043396735 0.1357725 209.4441849 3433654.132 0.041319957 0.054120597 3.01E-07 6.521359164 0.066591222 AQSPVS(ph)GPNVAHLTDGATLNDR ddPTM_K562_Paclitaxel_30min_R1 3 AQSPVSGPNVAHLTDGATLNDR 22 0 Q5THJ4-2;Q5THJ4 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 AQS(0.056)PVS(0.944)GPNVAHLTDGATLNDR;AQS(0.363)PVS(0.637)GPNVAHLTDGATLNDR;AQS(0.323)PVS(0.676)GPNVAHLTDGATLNDR 179.69 1.25E-22 143137100 2069.95 2025.32 2671.39 2590.69 1983.98 2218.21 1919.61 2635.41 2196.86 2643.81 TRUE FALSE 2098.935686 2246.451287 1996.964555 2424.534739 2254.231665 2611.578398 2283.845976 2411.515471 2407.878219 2105.000071 0.997119057 1.067197725 0.948676716 1.151797937 1.070893867 1.240654779 1.084962423 1.145613012 1.143885101 1 11.03960457 -6.273014859 24.96772762 1.127314396 1.010617821 0.392369464 0.065162139 661.2912326 1426370.535 0.017185292 0.02573994 5.33E-07 6.273014859 -0.116696575 AQSS(ph)PAAPASLSAPEPASQAR ddPTM_K562_Paclitaxel_30min_R1 3 AQSSPAAPASLSAPEPASQAR 21 0 J3KPH8;Q8WUI4-3;Q8WUI4-4;Q8WUI4;Q8WUI4-7;Q8WUI4-6;Q8WUI4-5;Q8WUI4-8;Q8WUI4-10;H0YI15 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 AQS(0.091)S(0.909)PAAPASLSAPEPASQAR;AQS(0.078)S(0.922)PAAPASLSAPEPASQAR;AQS(0.305)S(0.695)PAAPASLSAPEPASQAR 335.77 0 516931000 5336.88 5548.23 7348.6 5700.17 5363.2 4505.84 4401.27 5829.95 6394.2 6418.5 TRUE FALSE 5411.612786 6154.004514 5493.355044 5334.586609 6093.75864 5304.887459 5236.388006 5334.659358 7008.39148 5110.406177 1.058939857 1.204210449 1.074935113 1.043867439 1.192421586 1.038055934 1.024652019 1.043881675 1.371396174 1 12.31922225 AQST(ph)DSLGTSGSLQSK ddPTM_K562_Paclitaxel_30min_R1 1 AQSTDSLGTSGSLQSK 16 0 I3L456;Q15276-2;Q15276 I3L456 RABEP1 Rab GTPase-binding effector protein 1 1 AQS(0.056)T(0.914)DS(0.029)LGT(0.001)S(0.001)GSLQSK 154.51 7.32E-07 30237000 1978.9 1463.7 3919.7 2389.1 1793 1490.2 1305.4 1961.2 1516.8 2770.6 TRUE FALSE 2006.610705 1623.511716 2930.123257 2235.873819 2037.236956 1754.466047 1553.092835 1794.583819 1662.495417 2205.950199 0.909635542 0.735969342 1.328281689 1.013564957 0.923519015 0.795333479 0.704047098 0.813519643 0.753641409 1 11.10718451 -7.096155096 3.179943384 0.79488055 0.999950967 0.23567595 0.154443253 0.367775073 7.105899552 0.055137628 0.056459759 8.01E-08 7.096155096 0.205070417 AQSTDS(ph)LGTSGSLQSK ddPTM_K562_Paclitaxel_30min_R1 1 AQSTDSLGTSGSLQSK 16 0 I3L456;Q15276-2;Q15276 I3L456 RABEP1 Rab GTPase-binding effector protein 1 1 AQS(0.279)T(0.148)DS(0.571)LGT(0.001)SGSLQSK 163.56 1.88E-07 32298000 1178.5 876.22 1899.6 1433.3 1006.1 774.31 837.27 905.46 747.07 1173 TRUE FALSE 1195.002636 971.8886628 1420.022486 1341.374553 1143.147853 911.6230066 996.1376117 828.5355213 818.8294115 933.9419561 1.279525594 1.040630691 1.520461177 1.436250448 1.224003104 0.976102423 1.066594776 0.887138131 0.876745504 1 9.86718908 -7.199477221 3.155858651 0.95602827 1.315530066 0.647533624 0.126380362 0.179389826 3.544391415 0.048462403 0.047069263 6.32E-08 7.199477221 0.359501796 AQT(ph)PPGPSLSGSK ddPTM_K562_Paclitaxel_30min_R1 2 AQTPPGPSLSGSK 13 0 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 AQT(1)PPGPSLSGSK;AQT(0.981)PPGPS(0.019)LS(0.001)GSK 128.73 0.001405 57202000 8437.6 6399.5 15162.4 9344.4 6912.7 6076.6 5679.6 8291.8 6425.6 10385.5 TRUE FALSE 8555.752432 7098.219052 11334.46459 8745.092008 7854.326773 7154.19969 6757.27445 7587.359834 7042.80759 8268.929399 1.03468684 0.858420566 1.370729395 1.057584554 0.949860181 0.865190564 0.817188553 0.91757463 0.8517194 1 13.01348484 -6.86369395 3.261390145 0.88280047 1.086386672 0.339740841 0.125149909 0.28367225 5.981884496 0.041497815 0.048592486 1.37E-07 6.86369395 0.203586202 AQTLPTSVVTITSESS(ph)PGKR ddPTM_K562_Paclitaxel_30min_R1 2 AQTLPTSVVTITSESSPGKR 20 1 A0A087WUZ3;Q01082 A0A087WUZ3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 AQTLPTSVVTITS(0.012)ES(0.012)S(0.976)PGKR;AQTLPTSVVTITS(0.318)ES(0.033)S(0.649)PGKR 195.43 1.29E-18 650910000 5354.2 4019.2 8147.9 5169.5 4492 4353.1 3951 4936.7 3948.7 6754.1 TRUE FALSE 5429.175319 4458.029848 6090.861873 4837.951408 5103.88645 5125.061164 4700.681624 4517.296521 4327.990278 5377.610713 1.009588758 0.828998246 1.132633468 0.899647012 0.949099279 0.953036848 0.874120846 0.840019251 0.804816583 1 12.39274961 -7.762018591 4.209207038 0.864842415 0.961305125 0.170696604 0.086965151 0.326127558 13.35967181 0.034939262 0.024613983 1.73E-08 7.762018591 0.09646271 AQTPPGPSLSGSKS(ph)PCPQEK ddPTM_K562_Paclitaxel_30min_R1 1 AQTPPGPSLSGSKSPCPQEK 20 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 AQTPPGPS(0.065)LS(0.065)GS(0.372)KS(0.498)PCPQEK 61.167 0.020778 16254000 3099.7 2376.2 7714 3428.4 2630.6 2121.3 2168 3459.4 3535 4143.2 TRUE FALSE 3143.105363 2635.641552 5766.505294 3208.517769 2988.932256 2497.48277 2579.366682 3165.502377 3874.552545 3298.813566 0.952798726 0.798966507 1.748054317 0.972627796 0.9060628 0.757085152 0.781907383 0.959588141 1.174529105 1 11.68773153 -6.501822166 24.96150577 0.914308517 1.168258902 0.149043214 0.252663403 1397.487415 1656650.742 0.073543557 0.107780231 3.15E-07 6.501822166 0.253950385 AQTSTDAPTSAPSAPPST(ph)PTPSAGKR ddPTM_K562_Paclitaxel_30min_R1 2 AQTSTDAPTSAPSAPPSTPTPSAGKR 26 1 Q8IWZ8;B4DVK3;V9GZ08;Q8IWZ8-2 Q8IWZ8 SUGP1 SURP and G-patch domain-containing protein 1 1 AQTSTDAPTSAPSAPPS(0.274)T(0.723)PT(0.003)PSAGKR;AQTSTDAPTSAPSAPPS(0.075)T(0.9)PT(0.019)PS(0.006)AGKR 151.53 6.98E-26 17731400 4909.2 4402.7 7825.3 4459.6 3942.7 3994.7 3570.1 5287 4419.7 6367 TRUE FALSE 4977.943946 4883.401675 5849.706233 4173.581216 4479.76249 4703.103957 4247.507838 4837.83635 4844.231933 5069.401905 0.981958827 0.963309236 1.153924337 0.823288683 0.883686592 0.92774336 0.837871591 0.954320932 0.955582537 1 12.30759983 -6.275105256 24.99858822 0.906295985 1.026088656 0.3873488 0.069490979 780.5369042 1427811.429 0.019380175 0.028920432 5.31E-07 6.275105256 0.119792671 AQTTREEGAQTLEEDRAQT(ph)PHEDGGPQPHR ddPTM_K562_Paclitaxel_30min_R1 3 AQTTREEGAQTLEEDRAQTPHEDGGPQPHR 30 2 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 1 AQT(0.001)T(0.001)REEGAQT(0.033)LEEDRAQT(0.965)PHEDGGPQPHR;AQT(0.011)T(0.011)REEGAQT(0.012)LEEDRAQT(0.965)PHEDGGPQPHR;AQT(0.004)T(0.004)REEGAQT(0.014)LEEDRAQT(0.978)PHEDGGPQPHR 62.646 0.0003923 67323000 4035.09 3656.58 4816.98 4702.49 3547.81 3593.59 3414.38 4282.32 5818.3 4450.35 TRUE FALSE 4091.593709 4055.81777 3600.873823 4400.893339 4031.081787 4230.86273 4062.240781 3918.510187 6377.173712 3543.366227 1.154719396 1.144622799 1.016229651 1.242009168 1.137641872 1.194023552 1.146435485 1.105872195 1.799750097 1 11.79090487 AQVLATIHGHAGAFPAAGDAGEGAPGGGS(ph)SPER ddPTM_K562_Paclitaxel_30min_R1 1 AQVLATIHGHAGAFPAAGDAGEGAPGGGSSPER 33 0 Q86WR7;D3DRR9 Q86WR7 PROSER2;C10orf47 Proline and serine-rich protein 2 1 AQVLATIHGHAGAFPAAGDAGEGAPGGGS(0.5)S(0.5)PER 78.544 8.65E-06 32093000 420.77 402.08 538.97 482.3 372.18 305.34 420.56 680.97 391.46 525.77 TRUE FALSE 426.6620782 445.9804541 402.9003576 451.3674367 422.8772171 359.4877618 500.3590645 623.117348 429.0614821 418.6177854 1.019216319 1.065364324 0.962453989 1.078232823 1.01017499 0.858749376 1.195264707 1.488511405 1.024948048 1 8.709489797 -7.889329706 8.346650052 1.221860924 1.004880199 0.263699667 0.138417583 0.270500376 18.84756526 0.055658532 0.037484633 1.29E-08 7.889329706 -0.216980725 AQVLATIHGHAGAFPAAGDAGEGAPGGGSS(ph)PER ddPTM_K562_Paclitaxel_30min_R1 1 AQVLATIHGHAGAFPAAGDAGEGAPGGGSSPER 33 0 Q86WR7;D3DRR9 Q86WR7 PROSER2;C10orf47 Proline and serine-rich protein 2 1 AQVLATIHGHAGAFPAAGDAGEGAPGGGS(0.287)S(0.713)PER 86.886 4.57E-08 36096000 223.34 243.28 420.76 365 308.07 334.26 361.21 317.41 410.83 493.06 TRUE FALSE 226.4674491 269.8421331 314.5339341 341.5905337 350.0343497 393.5363178 429.7477119 290.4440393 450.2920571 392.5741014 0.576878221 0.68736611 0.801209079 0.870130079 0.891638925 1.002451044 1.094691958 0.739845136 1.147024359 1 8.616821189 -5.537202157 0.631606901 0.992276952 0.390279563 0.660468717 0.101236318 1.549555674 0.593475771 0.04908042 0.643656937 2.90E-06 5.537202157 -0.601997389 AQVPGPLT(ph)PEMEAR ddPTM_K562_Paclitaxel_30min_R1 2 AQVPGPLTPEMEAR 14 0 B8ZZS4;Q9H8Y5 B8ZZS4 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 1 AQVPGPLT(1)PEMEAR;AQVPGPLT(1)PEMEAR 115.04 0.0057125 127242000 6114.3 5888.8 7528.8 7086.5 6343.7 6546.2 6043.5 6361.1 5149.9 7642.2 TRUE FALSE 6199.919064 6531.759099 5628.061325 6632.003608 7207.81934 7707.076657 7190.222576 5820.68485 5644.570905 6084.715445 1.01893328 1.073469936 0.92495062 1.089944742 1.184577883 1.266628937 1.181685921 0.956607569 0.927663907 1 12.57097408 -8.282226393 23.23402932 0.956601706 1.106159459 0.347201441 0.090609897 438.7476338 490390.6451 0.056854423 0.027376785 5.22E-09 8.282226393 0.149557753 AREDIDMQLSEIMNNVHRIMTR ddPTM_K562_Paclitaxel_30min_R1 2 AREDIDMQLSEIMNNVHRIMTR 22 2 F5GYN0;A6NE01 F5GYN0 FAM186A Protein FAM186A 0 ; 87.228 0.00076564 60783000 2843.3 3085.1 3266.6 3232.7 2977.3 2770.2 3127 3460.6 2156.2 4024 FALSE TRUE 2883.114972 3421.941651 2441.906429 3025.369091 3382.858666 3261.456074 3720.331926 3166.60043 2363.312644 3203.906591 0.899874853 1.068052877 0.7621653 0.944275061 1.055854336 1.017962285 1.16118614 0.98835604 0.73763469 1 11.64561637 -6.534956028 23.07528998 1.002300704 0.913731046 0.086812461 0.120658651 219.0431612 418506.6878 0.036599541 0.047300113 2.92E-07 6.534956028 -0.088569658 AREQAEAEVASLNRR ddPTM_K562_Paclitaxel_30min_R1 1 AREQAEAEVASLNRR 15 2 P06753-2;A0A087WWU8;P06753-6;P06753-3;P06753-5;P06753-4;D6R904;A0A494C0G0 P06753-2 TPM3 Tropomyosin alpha-3 chain 0 73.219 0.023507 21073000 686.71 802.5 803.93 925.8 693.19 841.21 874.09 704.36 836.73 1013.7 FALSE TRUE 696.3260587 890.1196639 600.9679286 866.4233317 787.6142138 990.3867823 1039.944014 644.5202215 917.1016551 807.1073836 0.862742769 1.102851593 0.74459476 1.073492015 0.975848109 1.227081802 1.288482841 0.798555725 1.136282078 1 9.656616823 -6.438928108 24.99978206 1.074650991 0.920958022 0.200810844 0.152282392 155.2819641 46239.32558 0.043026365 0.063818398 3.64E-07 6.438928108 -0.153692969 ARFEELCSDLFR ddPTM_K562_Paclitaxel_30min_R1 1 ARFEELCSDLFR 12 1 A0A0G2JIW1;P0DMV8-2;P0DMV9;P0DMV8;V9GZ37;P48741;P17066 A0A0G2JIW1;P48741 HSPA1A;HSPA1B;HSPA7;HSPA6 Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 6 0 135.1 0.0030853 121580000 2085.4 1732.8 2050.8 2208.2 1793.5 1671.6 2220.9 2596.8 1885.3 3418 FALSE TRUE 2114.602034 1921.992964 1533.050176 2066.575936 2037.805064 1968.03479 2642.304181 2376.185631 2066.391489 2721.409724 0.777024501 0.706249025 0.563329425 0.759376994 0.748804947 0.723167398 0.970932145 0.873145124 0.759309218 1 11.41013846 -7.691712094 7.938294235 0.889950234 0.708827161 0.559971422 0.081329686 0.200781457 19.96528282 0.031859154 0.024565796 2.03E-08 7.691712094 -0.181123073 ARFEELNADLFR ddPTM_K562_Paclitaxel_30min_R1 2 ARFEELNADLFR 12 1 P11142-2;P11142;E9PKE3;E9PN89;E9PNE6;A8K7Q2;P54652 P11142-2 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 ; 199.4 2.55E-05 841770000 6102.5 6734.6 6959.3 6254.1 5550.2 5825.4 7430.4 9222 6990.8 9851 FALSE TRUE 6187.953828 7469.906403 5202.338643 5852.990018 6306.231206 6858.452897 8840.279611 8438.533538 7662.297576 7843.360793 0.788941627 0.952385922 0.663279273 0.746234959 0.804021563 0.874427822 1.127103527 1.075882362 0.976915098 1 12.93725625 -7.590477395 4.36721816 1.050233548 0.793744 0.705935269 0.077270724 0.121914639 4.597003684 0.031716722 0.024400555 2.57E-08 7.590477395 -0.256489548 ARGDSEALDEES(ph) ddPTM_K562_Paclitaxel_30min_R1 2 ARGDSEALDEES 12 1 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;A0A087WZ99 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 1 ARGDS(0.018)EALDEES(0.982);ARGDSEALDEES(1) 120.55 0.007555 169815000 7465.1 6621.5 9602.5 7699.3 6509.3 6458.9 6615.9 8176.4 7628 8592.6 TRUE FALSE 7569.634432 7344.457762 7178.230113 7205.501359 7395.976863 7604.295228 7871.232488 7481.763785 8360.703483 6841.423403 1.10644145 1.073527734 1.049230502 1.053216697 1.081058199 1.111507764 1.150525559 1.093597537 1.222070758 1 12.7400808 -7.269119106 3.123413223 1.124885011 1.069288601 0.130756514 0.053679012 0.431881063 8.670671602 0.018569257 0.017180103 5.38E-08 7.269119106 -0.055596409 ARGTRGEDAGTR ddPTM_K562_Paclitaxel_30min_R1 1 ARGTRGEDAGTR 12 2 Q15772-1;Q15772 Q15772-1 SPEG Striated muscle preferentially expressed protein kinase 0 67.334 0.025693 0 976.77 933.92 1182.4 1065.4 923.7 880.58 1149.8 1093.3 973.59 1198.9 FALSE TRUE 990.4477936 1035.888544 883.8884963 997.0700126 1049.523578 1036.738499 1367.968548 1000.417341 1067.10767 954.5635219 1.037592335 1.08519603 0.925960898 1.044529766 1.099480081 1.086086442 1.433082782 1.048036425 1.117901161 1 9.898697395 -7.005658047 2.16559984 1.158052904 1.020500372 0.172076048 0.115147681 0.500013056 4.709869786 0.041958924 0.045747075 9.87E-08 7.005658047 -0.137552532 ARHDS(ph)PDLAPNVTYSLPR ddPTM_K562_Paclitaxel_30min_R1 3 ARHDSPDLAPNVTYSLPR 18 1 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 ARHDS(1)PDLAPNVTYSLPR;ARHDS(1)PDLAPNVTYSLPR;ARHDS(1)PDLAPNVTYSLPR 85.805 0.0036882 569467000 2451.25 2214.66 3007.82 2525.38 2514.08 2399.71 2644.6 2607.54 2608.81 2933.84 TRUE FALSE 2485.575063 2456.464068 2248.458641 2363.41343 2856.54026 2825.264875 3146.399044 2386.013201 2859.397857 2335.921798 1.064066043 1.051603727 0.962557327 1.011769072 1.222874954 1.20948607 1.346962491 1.021443956 1.224098281 1 11.18977626 -6.754558493 24.99049359 1.182624492 1.020296362 0.349406648 0.09833719 168.0721655 610412.9559 0.028719226 0.036246099 1.76E-07 6.754558493 -0.16232813 ARIARLMLES(ph)EY(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 ARIARLMLESEYR 13 2 Q9H672-2;Q9H672 Q9H672-2 ASB7 Ankyrin repeat and SOCS box protein 7 2 ARIARLMLES(1)EY(1)R 66.023 0.028649 14677000 0 0 0 0 0 0 0 0 0 114.24 TRUE FALSE 0 0 0 0 0 0 0 0 0 90.95782529 0 0 0 0 0 0 0 0 0 1 6.507125856 ARLLRALRLVR ddPTM_K562_Paclitaxel_30min_R1 1 ARLLRALRLVR 11 3 Q8N8D1 Q8N8D1 PDCD7 Programmed cell death protein 7 0 1.3829 0.030708 0 0 0 0 0 0 0 0 0 0 0 FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 ARPATDSFDDYPPRRGDDSFGDSYDSR ddPTM_K562_Paclitaxel_30min_R1 1 ARPATDSFDDYPPRRGDDSFGDSYDSR 27 3 F8VP89 F8VP89 EIF4B 0 41.672 0.024818 57473000 0 0 0 0 0 0 56.658 0 0 0 FALSE TRUE 0 0 0 0 0 0 67.40855973 0 0 0 0 ARPFPDGLAEDIDKGEVSAR ddPTM_K562_Paclitaxel_30min_R1 1 ARPFPDGLAEDIDKGEVSAR 20 2 P13639 P13639 EEF2 Elongation factor 2 0 75.564 0.0038881 12872000 754.75 785.85 1458.7 778.81 816.55 735.91 774.4 1095.9 1086.3 1433.9 FALSE TRUE 765.3188286 871.6517606 1090.433144 728.8606124 927.7779343 866.4133058 921.3383574 1002.796455 1190.643969 1141.670393 0.670350071 0.763488101 0.955120804 0.638415971 0.812649553 0.758899689 0.807009066 0.878358991 1.042896423 1 10.15693048 -8.5174199 2.145779278 1.02465276 0.772901631 0.595314359 0.081627128 0.22834238 1.924936818 0.067931954 0.022407268 3.04E-09 8.5174199 -0.251751129 ARPS(ph)PGHCLPEDEDPEER ddPTM_K562_Paclitaxel_30min_R1 3 ARPSPGHCLPEDEDPEER 18 1 H3BPY8;H3BPM3;H3BRE8;Q9BWH6-2;Q9BWH6 H3BPY8 RPAP1 RNA polymerase II-associated protein 1 1 ARPS(1)PGHCLPEDEDPEER;ARPS(1)PGHCLPEDEDPEER;ARPS(1)PGHCLPEDEDPEER 89.877 0.0017111 98336000 3141.87 3276.14 3771.15 3373.04 3017.22 2744.19 2856.38 3798 2869.51 3973.9 TRUE FALSE 3185.865873 3633.840044 2819.076542 3156.708312 3428.216446 3230.833566 3398.363194 3475.336194 3145.139257 3164.016999 1.006905423 1.148489419 0.890980214 0.997690061 1.083501273 1.021117639 1.074066035 1.098393654 0.994033616 1 11.62754164 -6.742857594 24.93119191 1.050345709 1.012261783 0.056477496 0.066361729 724.2775344 971761.0631 0.019711945 0.025398877 1.81E-07 6.742857594 -0.038083925 ARPSAWEPAAGNS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 1 ARPSAWEPAAGNSPAR 16 1 Q8IY33-4;Q8IY33-2;Q8IY33;Q8IY33-5 Q8IY33-4 MICALL2 MICAL-like protein 2 1 ARPSAWEPAAGNS(1)PAR 124.04 0.00025587 17397000 764.16 786.04 1138.5 944.22 850.47 644.68 803.38 1183.2 989.66 959.44 TRUE FALSE 774.8605976 871.8625054 851.0715942 883.6619554 966.3184126 759.0049462 955.8171611 1082.679775 1084.721265 763.9056014 1.014340772 1.14132231 1.114105712 1.156768525 1.264970974 0.993584737 1.251224182 1.417295243 1.419967681 1 9.57725056 -7.987761624 22.83991939 1.318030837 1.124052208 0.243587752 0.131061879 90.44608751 168793.9226 0.052419265 0.035299172 1.03E-08 7.987761624 -0.193978629 ARQPLSEASNQQPLS(ph)GGEEK ddPTM_K562_Paclitaxel_30min_R1 2 ARQPLSEASNQQPLSGGEEK 20 1 Q9NQW6;Q9NQW6-2;C9JJT6 Q9NQW6 ANLN Actin-binding protein anillin 1 ARQPLSEASNQQPLS(1)GGEEK;ARQPLSEASNQQPLS(1)GGEEK 90.062 0.00071813 34578000 2499.4 2084.8 4263.8 3089.1 2636 1877.51 2260.2 2954.3 2463.42 3322.6 TRUE FALSE 2534.399311 2312.425514 3187.350956 2890.978952 2995.067828 2210.460037 2689.061151 2703.313775 2700.042498 2645.452296 0.958021173 0.874113481 1.204841592 1.092810842 1.132157186 0.835569797 1.016484461 1.021872055 1.020635489 1 11.36929869 ARS(ph)PDLGPQEQMNPK ddPTM_K562_Paclitaxel_30min_R1 2 ARSPDLGPQEQMNPK 15 1 H3BUW4;H3BMU4;A0A0C4DGM2;C9K0J8;Q8IWY8-4;Q8IWY8-3;Q8IWY8-2;Q8IWY8 H3BUW4 ZSCAN29 Zinc finger and SCAN domain-containing protein 29 1 ARS(1)PDLGPQEQMNPK;ARS(1)PDLGPQEQMNPK 195.96 1.04E-08 20663500 1602.61 1596.29 3640.1 2610.72 1775.55 1747.26 1651.58 2116.68 2134.27 2700.53 TRUE FALSE 1625.051484 1770.578341 2721.111735 2443.280104 2017.40997 2057.112028 1964.958683 1936.854822 2339.27617 2150.160504 0.755781479 0.823463336 1.265538889 1.136324521 0.938260175 0.95672487 0.913866049 0.900795461 1.087954209 1 11.07022864 -5.546198759 24.99844872 1.017778912 0.772701714 0.43847346 0.107470396 192.4234883 206272.3728 0.029873267 0.079046297 2.84E-06 5.546198759 -0.245077197 ARS(ph)PEICK ddPTM_K562_Paclitaxel_30min_R1 1 ARSPEICK 8 1 Q1MSJ5-1;Q1MSJ5 Q1MSJ5-1 CSPP1 Centrosome and spindle pole-associated protein 1 1 ARS(1)PEICK 76.843 0.024463 9745200 2991.1 2689.3 4719.5 3623.4 2483.9 2543.9 2606.9 3352.9 3079.2 3977.9 TRUE FALSE 3032.984628 2982.926869 3528.003855 3391.011342 2822.249233 2995.024947 3101.545666 3068.050217 3374.970918 3167.201796 0.957622792 0.94181775 1.113918241 1.070664757 0.891086017 0.94563755 0.979269988 0.968694265 1.065600216 1 11.62899308 -8.748907186 24.99227857 1.032800123 0.984950944 0.089244927 0.062762363 564.2462381 1125262.464 0.046619282 0.017343275 1.78E-09 8.748907186 -0.047849178 ARS(ph)PSVAAMASPQLCR ddPTM_K562_Paclitaxel_30min_R1 3 ARSPSVAAMASPQLCR 16 1 P25325-2 P25325-2 1 ARS(0.911)PS(0.089)VAAMASPQLCR;ARS(0.991)PS(0.009)VAAMASPQLCR;ARS(0.5)PS(0.5)VAAMASPQLCR 155.92 8.73E-07 246539000 3069.83 2973.61 4013.52 3455.1 3204.35 2876.09 2958.73 3699.92 3646.67 4092.87 TRUE FALSE 3112.817091 3298.278796 3000.257237 3233.50535 3640.83672 3386.124179 3520.133572 3385.588702 3996.948947 3258.740847 0.955220816 1.012132891 0.920679912 0.992256059 1.117252611 1.03908974 1.080212799 1.038925419 1.226531699 1 11.67009891 -6.641913733 5.363754534 1.082865882 0.966062945 0.459852004 0.060796928 0.187504833 8.051249538 0.017353559 0.022497972 2.28E-07 6.641913733 -0.116802936 ARS(ph)VDALDDLTPPSTAESGSR ddPTM_K562_Paclitaxel_30min_R1 2 ARSVDALDDLTPPSTAESGSR 21 1 S4R3V8;Q86X29-6;Q86X29-5;Q86X29-2;Q86X29-3;Q86X29-4;Q86X29 S4R3V8 LSR Lipolysis-stimulated lipoprotein receptor 1 ARS(1)VDALDDLTPPSTAESGSR;ARS(1)VDALDDLTPPSTAESGSR 108.77 8.92E-05 132672000 3260.4 2633.7 4098.3 3087.6 2506.2 2423.64 2520.5 3410.3 2082.27 3188.7 TRUE FALSE 3306.055659 2921.256273 3063.633478 2889.575156 2847.58687 2853.438524 2998.751717 3120.573729 2282.281337 2538.84119 1.302190808 1.150625838 1.206705441 1.138147265 1.121608899 1.123913751 1.181149782 1.229133095 0.898946081 1 11.30995444 -2.000000002 0.066677592 0.792980534 1.926778124 0.444998614 0.081127181 283.7224324 1.405741132 4.387015756 30.48859371 0.01 2.000000002 1.13379759 ARSVDALDDLT(ph)PPSTAESGSRS(ph)PTSNGGR ddPTM_K562_Paclitaxel_30min_R1 1 ARSVDALDDLTPPSTAESGSRSPTSNGGR 29 2 S4R3V8;Q86X29-6;Q86X29-5;Q86X29-2;Q86X29-3;Q86X29-4;Q86X29 S4R3V8 LSR Lipolysis-stimulated lipoprotein receptor 2 ARS(0.077)VDALDDLT(0.873)PPS(0.139)T(0.181)AES(0.048)GS(0.134)RS(0.529)PT(0.015)S(0.004)NGGR 75.896 0.00013859 57815000 723.05 727.23 927.24 723.58 502.56 472.89 654.47 596 202.27 751.98 TRUE FALSE 733.1749308 806.6314307 693.146794 677.1728174 571.0171804 556.7504018 778.6522659 545.3660799 221.6989373 598.7260632 1.224558234 1.347246229 1.157702724 1.131022782 0.953720266 0.929891708 1.300515067 0.910877467 0.370284427 1 9.225752264 -7.098535186 0.490468595 0.788678353 1.318281119 0.376178841 0.209605301 1.312135694 0.658839932 0.195474176 0.307716754 7.97E-08 7.098535186 0.529602766 ARTDEVPAGGS(ph)RS(ph)EAEDEDDEDYVPYVPLR ddPTM_K562_Paclitaxel_30min_R1 1 ARTDEVPAGGSRSEAEDEDDEDYVPYVPLR 30 2 D6RD33;D6RGI7;A0A499FJW5;Q9UJV9 D6RD33 DDX41 Probable ATP-dependent RNA helicase DDX41 2 ART(0.305)DEVPAGGS(0.901)RS(0.741)EAEDEDDEDY(0.051)VPY(0.002)VPLR 43.07 0.021236 9443900 324.82 443.5 414.01 368.11 407.77 484.2 432.64 403.81 482.43 558.04 TRUE FALSE 329.3684822 491.9228298 309.4880551 344.5010722 463.3151776 570.0660715 514.7311815 369.50382 528.7695571 444.3111417 0.741301424 1.107158438 0.696557043 0.775359967 1.042771909 1.283033483 1.158492626 0.831633028 1.190088448 1 8.795426509 -6.861260353 5.647603216 1.093647448 0.84130331 0.400635838 0.152786214 0.229379773 10.86165602 0.048666762 0.055662385 1.38E-07 6.861260353 -0.252344138 ARTDEVPAGGS(ph)RSEAEDEDDEDYVPYVPLR ddPTM_K562_Paclitaxel_30min_R1 1 ARTDEVPAGGSRSEAEDEDDEDYVPYVPLR 30 2 D6RD33;D6RGI7;A0A499FJW5;Q9UJV9 D6RD33 DDX41 Probable ATP-dependent RNA helicase DDX41 1 ART(0.004)DEVPAGGS(0.498)RS(0.498)EAEDEDDEDYVPYVPLR 76.98 2.61E-05 188300000 715.56 862.39 1041.3 1165.1 756.01 726.83 835.81 1081 804.94 1173.3 TRUE FALSE 725.5800477 956.5486566 778.4109364 1090.375701 858.9913614 855.7230953 994.4005843 989.1623026 882.2580836 934.180816 0.776701935 1.023943802 0.833255108 1.167199842 0.919512954 0.916014417 1.064462647 1.058855294 0.94441897 1 9.867558008 -4.603419145 1.4366179 0.996949896 6.61E-17 0.324117945 0.090692722 8.478636824 4.055039085 0.02473653 19.3428338 2.49E-05 4.603419145 -0.996949896 ARTDEVPAGGSRS(ph)EAEDEDDEDYVPYVPLR ddPTM_K562_Paclitaxel_30min_R1 1 ARTDEVPAGGSRSEAEDEDDEDYVPYVPLR 30 2 D6RD33;D6RGI7;A0A499FJW5;Q9UJV9 D6RD33 DDX41 Probable ATP-dependent RNA helicase DDX41 1 ART(0.012)DEVPAGGS(0.21)RS(0.776)EAEDEDDEDY(0.002)VPYVPLR 65.223 0.0032809 155030000 613.56 623.44 694.47 600.45 411.81 564.2 558.67 591.7 464.01 860.18 TRUE FALSE 622.151733 691.5092875 519.1424594 561.9398245 467.905494 664.2529482 664.674716 541.4313917 508.5802338 684.8748438 0.908416682 1.009687089 0.758010699 0.820500022 0.683198541 0.969889541 0.970505373 0.790555233 0.742588574 1 9.419696559 -5.753159089 24.99774439 0.837156879 0.959051887 0.167278339 0.104117799 317.703913 959109.5919 0.027155493 0.069307902 1.77E-06 5.753159089 0.121895009 ARVDS(ph)FFY(ph)ILGYNPET(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 ARVDSFFYILGYNPETR 17 1 Q9P2R6;A0A590UJ84;A0A590UK57;H7BYW9 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 3 ARVDS(0.996)FFY(0.999)ILGY(0.01)NPET(0.994)R 67.449 0.029424 60813000 1534.9 1318.9 2200.4 1836.3 1623 1525.2 984.45 1049.5 1764.8 956.01 TRUE FALSE 1556.393336 1462.901962 1644.881806 1718.527937 1844.080078 1795.672805 1171.244248 960.3384242 1934.316925 761.1746372 2.04472569 1.921900561 2.160978211 2.257731476 2.422676725 2.359081237 1.538732626 1.26165321 2.541226193 1 9.572083681 -10.93089306 0.298776198 0.451679337 2.183774836 0.407486866 0.379818301 14.05580516 1.097602117 7.185285303 0.455368017 1.17E-11 10.93089306 1.732095499 ARVGGS(ph)DEEASGIPSR ddPTM_K562_Paclitaxel_30min_R1 4 ARVGGSDEEASGIPSR 16 1 A8MV53;A0A0A6YYI3;A0A0B4J1V8;Q9NQ55-2;Q9NQ55;Q9NQ55-3;H7C446 A8MV53 PPAN;PPAN-P2RY11 Suppressor of SWI4 1 homolog 1 ARVGGS(0.886)DEEAS(0.103)GIPS(0.011)R;ARVGGS(0.994)DEEAS(0.006)GIPSR;ARVGGS(0.996)DEEAS(0.004)GIPSR;ARVGGS(1)DEEASGIPSR 184.22 1.01E-09 65025000 2503.6 2183.22 3716.77 3561.87 2171.85 2686.93 2747.35 4555.08 2135.39 5563.6 TRUE FALSE 2538.658124 2421.591343 2778.425445 3333.427601 2467.69274 3163.419309 3268.64532 4168.097522 2340.503751 4429.735266 0.573094772 0.546667283 0.627221556 0.752511697 0.557074541 0.714132814 0.737887283 0.940936032 0.528361992 1 12.11300477 -14.99999993 0.055844843 2.258177207 0.101419878 0.484882419 0.112842309 372.9485191 1.526260624 66.29532383 12.45727166 1.00E-15 14.99999993 -2.156757329 AS(ph)ASPSTSSTSSRPK ddPTM_K562_Paclitaxel_30min_R1 1 ASASPSTSSTSSRPK 15 1 F5H858;F6TH74;J3KP75;O75167-5;O75167-2;O75167;O75167-4 F5H858 PHACTR2 Phosphatase and actin regulator;Phosphatase and actin regulator 2 1 AS(0.948)AS(0.052)PSTSSTSSRPK 88.19 0.010655 10840000 2139.6 1590.7 3326.3 2288.2 1842.7 1813.1 1413 2306.6 2034.9 2968.2 TRUE FALSE 2169.561001 1764.378005 2486.534426 2141.445094 2093.706937 2134.627828 1681.109374 2110.639933 2230.361237 2363.279211 0.91802991 0.746580428 1.052154318 0.906132921 0.885932956 0.903248257 0.711346068 0.893097998 0.943756974 1 11.20657437 -8.922571692 2.994670096 0.997467973 0.875050855 0.168995381 0.088689517 0.417986346 7.745239118 0.085641052 0.023068701 1.20E-09 8.922571692 -0.122417118 AS(ph)DLEDEESAAR ddPTM_K562_Paclitaxel_30min_R1 2 ASDLEDEESAAR 12 0 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 AS(1)DLEDEESAAR;AS(1)DLEDEESAAR 217.46 5.65E-160 24012000 1649.1 1831.16 2427.8 1935.18 1630.63 1883.02 1648.05 1716.24 1139.65 2830.6 TRUE FALSE 1672.192488 2031.092241 1814.871863 1811.066216 1852.749413 2216.947158 1960.758884 1570.4347 1249.118475 2253.722166 0.741969224 0.901216783 0.80527755 0.803588944 0.822084213 0.983682546 0.87000914 0.696818234 0.554246878 1 11.13809396 -8.260825421 24.82184697 0.719149413 0.849974434 0.103075235 0.120027507 80.774762 3265835.29 0.058074872 0.030907509 5.48E-09 8.260825421 0.130825021 AS(ph)DPGLPAEEPKEK ddPTM_K562_Paclitaxel_30min_R1 2 ASDPGLPAEEPKEK 14 1 P27708;F8VPD4 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 AS(1)DPGLPAEEPKEK;AS(1)DPGLPAEEPKEK 85.176 0.015764 29967000 8208.8 5866.3 20266.1 9787.1 6537.7 5184.1 4834.4 8995.5 6805 12405.6 TRUE FALSE 8323.748526 6506.802473 15149.67241 9159.399211 7428.245424 6103.427347 5751.702163 8231.276127 7458.650656 9877.33191 0.842712243 0.658761144 1.53378185 0.927315119 0.752049794 0.617922674 0.582313343 0.83335016 0.755128077 1 13.26990567 -6.697586532 4.587853376 0.732049741 1.012839215 0.193206181 0.233717332 0.322299743 13.33419336 0.072611063 0.093069 2.01E-07 6.697586532 0.280789474 AS(ph)EMAS(ph)EKEY(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 ASEMASEKEYK 11 1 O76041 O76041 NEBL Nebulette 3 AS(1)EMAS(1)EKEY(1)K 71.976 0.021217 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 AS(ph)FETLPNISDLCLR ddPTM_K562_Paclitaxel_30min_R1 2 ASFETLPNISDLCLR 15 0 Q9H019-3;Q9H019;E9PRW1;E9PSD6;C9JF50;E9PLU1;E9PRK5;Q9H019-2 Q9H019-3 MTFR1L Mitochondrial fission regulator 1-like 1 AS(1)FETLPNISDLCLR;AS(1)FETLPNISDLCLR 178.47 1.41E-06 14034300 1769.03 1689.55 2091.57 1739.86 1482.77 1538.96 1789.79 2133.1 1480.38 2757 TRUE FALSE 1793.801878 1874.020783 1563.527285 1628.273167 1684.748378 1811.872948 2129.393309 1951.879841 1622.577114 2195.121887 0.817176435 0.853720604 0.712273562 0.741768909 0.767496506 0.825408812 0.97005698 0.889189731 0.73917404 1 11.10008533 -7.529277231 23.76864852 0.891422738 0.778898811 0.374079184 0.073598955 107.1042149 397853.8704 0.028493014 0.022139732 2.96E-08 7.529277231 -0.112523927 AS(ph)GQAFELILS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 ASGQAFELILSPR 13 0 A2A2D0;P16949;P16949-2 A2A2D0 STMN1 Stathmin 2 AS(1)GQAFELILS(1)PR 176.11 0.00090344 12544000 4249 3505.5 4633.4 3014.6 2693.3 2514.4 2742.6 2952.5 2900 3694.5 TRUE FALSE 4308.499109 3888.242345 3463.640865 2821.257049 3060.173058 2960.293536 3262.994033 2701.666696 3178.557958 2941.558872 1.464699262 1.321830537 1.177484802 0.959102697 1.04032358 1.006368958 1.109273747 0.918447263 1.080569214 1 11.5223652 -5.772377593 1.766580571 1.01664261 1.46039157 0.881128388 0.055936206 0.120719562 0.684065008 0.015277656 0.064943457 1.69E-06 5.772377593 0.44374896 AS(ph)GQAFELILSPR ddPTM_K562_Paclitaxel_30min_R1 2 ASGQAFELILSPR 13 0 A2A2D0;P16949;P16949-2 A2A2D0 STMN1 Stathmin 1 AS(0.997)GQAFELILS(0.003)PR;AS(0.888)GQAFELILS(0.112)PR 119.04 0.002211 25763000 3065.96 2733.39 3704.1 2580.32 2275.54 1981.06 1847.01 2658.8 2506.87 2496.42 TRUE FALSE 3108.892899 3031.830764 2768.954143 2414.829824 2585.507073 2332.373176 2197.470505 2432.918344 2747.666064 1987.648234 1.564106187 1.525335677 1.393080574 1.214918104 1.300787045 1.173433576 1.105563081 1.224018568 1.38237039 1 10.95684674 -5.979134167 1.283816213 1.197173711 1.591657545 0.680618698 0.096481545 0.323125525 0.938337601 0.031280048 0.120456108 1.05E-06 5.979134167 0.394483833 AS(ph)GRPHGNT(ph)TAS(ph)T(ph)APPR ddPTM_K562_Paclitaxel_30min_R1 1 ASGRPHGNTTASTAPPR 17 1 Q9H7T3 Q9H7T3 C10orf95 Uncharacterized protein C10orf95 4 AS(0.993)GRPHGNT(0.924)T(0.103)AS(0.99)T(0.99)APPR 47.732 0.030954 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 AS(ph)NS(ph)S(ph)KLESEMTK ddPTM_K562_Paclitaxel_30min_R1 1 ASNSSKLESEMTK 13 1 J3KP97;Q5T9S2;E9PFB9;Q5T9S5-2;Q5T9S5 J3KP97 CCDC18 Coiled-coil domain-containing protein 18 3 AS(1)NS(1)S(1)KLESEMTK 62.088 0.023304 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 AS(ph)PAPGSGHPEGPGAHLDMNSLDR ddPTM_K562_Paclitaxel_30min_R1 7 ASPAPGSGHPEGPGAHLDMNSLDR 24 0 O94826 O94826 TOMM70A Mitochondrial import receptor subunit TOM70 1 AS(0.948)PAPGS(0.052)GHPEGPGAHLDMNSLDR;AS(0.714)PAPGS(0.286)GHPEGPGAHLDMNSLDR;AS(0.994)PAPGS(0.006)GHPEGPGAHLDMNSLDR;AS(0.998)PAPGS(0.002)GHPEGPGAHLDMNSLDR;AS(0.952)PAPGS(0.048)GHPEGPGAHLDMNSLDR;AS(0.981)PAPGS(0.019)GHPEGPGAHLDMNSLDR;AS(0.98)PAPGS(0.02)GHPEGPGAHLDMNSLDR 128.75 1.01E-10 3493456000 4127.21 3811.87 5345.89 4766.94 4469.822 4189.65 3937.81 4903.35 3537.3 5771.47 TRUE FALSE 4185.003674 4228.062858 3996.253952 4461.209804 5078.687431 4932.625602 4684.988891 4486.779812 3877.07347 4595.241246 0.910725564 0.92009595 0.869650523 0.970832556 1.105205833 1.073420379 1.019530562 0.97639701 0.843714892 1 12.16592489 -6.484790526 7.431247549 1.009038058 0.904649367 0.324448797 0.065949597 0.311046565 51.73023342 0.020376888 0.029721658 3.27E-07 6.484790526 -0.104388691 AS(ph)PGHSPHYFAASSPTSPNALPPAR ddPTM_K562_Paclitaxel_30min_R1 2 ASPGHSPHYFAASSPTSPNALPPAR 25 0 Q8TEM1 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 1 AS(0.827)PGHS(0.168)PHY(0.005)FAASSPTSPNALPPAR;AS(0.735)PGHS(0.265)PHYFAASSPTSPNALPPAR 122.47 3.58E-10 195716000 2407.96 2080.81 2864.51 2709.04 1975.73 2489.22 2352.91 2466.85 2187.76 2865.08 TRUE FALSE 2441.678869 2307.999873 2141.329023 2535.2943 2244.857875 2930.648217 2799.362389 2257.275695 2397.904123 2281.175123 1.070360116 1.01175918 0.938695588 1.111398364 0.984079588 1.284709879 1.227158038 0.989523194 1.051170556 1 11.15556149 -6.288202348 23.75131342 1.101232913 1.007420368 0.132631539 0.098633623 761.7468965 676024.8605 0.029488462 0.043756113 5.15E-07 6.288202348 -0.093812545 AS(ph)PGHSPHYFAASSPTSPNALPPARK ddPTM_K562_Paclitaxel_30min_R1 1 ASPGHSPHYFAASSPTSPNALPPARK 26 1 Q8TEM1 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 1 AS(0.793)PGHS(0.207)PHYFAASSPTSPNALPPARK 100.53 3.22E-06 22918000 783.09 803.14 1400.6 887.91 844.56 610.59 641.42 1119.5 798.34 1189.2 TRUE FALSE 794.055676 890.8295412 1047.001208 830.9634267 959.6033705 718.8695634 763.1260966 1024.391487 875.0241241 946.8403872 0.838637311 0.940844469 1.105784271 0.877617218 1.013479551 0.759229933 0.805971214 1.081905146 0.924151669 1 9.886977435 -8.272129756 24.94467707 1.00227129 0.912371049 0.157294361 0.101148087 1571.64959 3667230.638 0.057029867 0.027852488 5.34E-09 8.272129756 -0.08990024 AS(ph)PPPQGPLPGPPGALHR ddPTM_K562_Paclitaxel_30min_R1 3 ASPPPQGPLPGPPGALHR 18 0 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 AS(1)PPPQGPLPGPPGALHR;AS(1)PPPQGPLPGPPGALHR;AS(1)PPPQGPLPGPPGALHR 165.58 1.05E-09 177527000 2311.69 1683.42 3189.83 2388.34 1731.85 1483.382 1462.61 2183.07 2377.93 2450.1 TRUE FALSE 2344.060792 1867.221489 2384.517965 2235.162562 1967.75729 1746.43897 1740.132612 1997.604577 2606.340801 1950.768275 1.201609039 0.957172368 1.222348136 1.145785786 1.008708884 0.895257008 0.892024252 1.024009157 1.336058636 1 10.9298267 -5.233531424 22.71820742 1.051007069 1.201609785 0.097124099 0.135297259 7151.709227 5821462.636 0.035376471 2.61549616 5.84E-06 5.233531424 0.150602716 AS(ph)PSKPASAPASR ddPTM_K562_Paclitaxel_30min_R1 1 ASPSKPASAPASR 13 1 E7EVA0;P27816;P27816-2;P27816-6;P27816-5;P27816-4;H0Y2V1;H7C4C5;F8W9U4;B5MEG9 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 AS(0.95)PS(0.05)KPASAPASR 109.99 0.013796 4476600 644.29 591.24 964.88 780.24 627.95 622.26 510.12 697.57 568.75 972.87 TRUE FALSE 653.3120478 655.7935826 721.2841105 730.1988986 713.4874213 732.609074 606.912607 638.3070744 623.3809787 774.59856 0.843420168 0.846623808 0.93117151 0.942680424 0.921106052 0.945791939 0.783518894 0.824048878 0.804779419 1 9.597305009 -7.753498042 24.99999035 0.838424201 0.906089246 0.11907094 0.064570397 290.7391522 915273.745 0.024676059 0.018760569 1.76E-08 7.753498042 0.067665045 AS(ph)PSPQPSSQPLQIHR ddPTM_K562_Paclitaxel_30min_R1 3 ASPSPQPSSQPLQIHR 16 0 B5MBZ0;Q9HC35 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 AS(0.997)PS(0.003)PQPSSQPLQIHR;AS(0.5)PS(0.5)PQPSSQPLQIHR;AS(0.855)PS(0.145)PQPSSQPLQIHR 131.86 3.78E-07 546492000 4225.77 3875.64 4873.47 4049.34 3562.93 3478.22 3819.6 4405.73 3487.74 4454.06 TRUE FALSE 4284.943818 4298.795482 3643.102224 3789.633457 4048.261387 4095.03348 4544.34916 4031.435737 3822.753011 3546.320127 1.20827891 1.212184836 1.027290852 1.068610086 1.141538621 1.15472753 1.281426661 1.136794083 1.077949219 1 11.79210706 -8.972825534 2.770132703 1.00154896 1.152725108 0.343184096 0.068058848 0.312396179 5.50073089 0.071588683 0.019341707 1.06E-09 8.972825534 0.151176149 AS(ph)SFHEFAR ddPTM_K562_Paclitaxel_30min_R1 2 ASSFHEFAR 9 0 Q9NU19 Q9NU19 TBC1D22B TBC1 domain family member 22B 1 AS(0.5)S(0.5)FHEFAR;AS(0.5)S(0.5)FHEFAR 89.171 0.012949 10857500 3778.9 3264 4096.7 3789.5 3218 3765.5 3582.3 4277.3 2952.4 4670.3 TRUE FALSE 3831.816259 3620.374558 3062.437418 3546.458431 3656.346081 4433.258555 4262.022724 3913.916667 3235.991212 3718.490296 1.030476337 0.973614093 0.823570098 0.953736099 0.983287783 1.192220014 1.146170189 1.052555299 0.870243285 1 11.86050129 -7.013360449 22.23359532 1.064322218 0.942399779 0.221540684 0.093797759 211.8069742 352477.5659 0.032131182 0.033610593 9.70E-08 7.013360449 -0.121922439 AS(ph)SHSSQTQGGGSVTK ddPTM_K562_Paclitaxel_30min_R1 2 ASSHSSQTQGGGSVTK 16 0 P02545-6;P02545;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;Q3BDU5;P02545-2;Q5TCI8 P02545-6;Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C 1 AS(0.489)S(0.489)HS(0.021)SQTQGGGSVTK;AS(0.483)S(0.483)HS(0.017)S(0.017)QTQGGGSVTK 173.09 3.32E-09 32668000 9695.5 8162.4 14939.2 10196.3 7599 6239.7 5942.4 9585.5 8429.8 10775 TRUE FALSE 9831.266913 9053.598435 11167.61419 9542.354955 8634.112452 7346.223185 7069.939379 8771.151944 9239.519955 8579.049085 1.145962311 1.055314913 1.301731006 1.112285856 1.006418353 0.856298071 0.824093592 1.022392092 1.076986489 1 13.06660203 -6.781339486 3.284785153 0.948368558 1.16215013 0.522332665 0.090101941 0.199783023 4.476399642 0.030606654 0.037503623 1.65E-07 6.781339486 0.213781572 AS(ph)SHSSQTQGGGSVTKK ddPTM_K562_Paclitaxel_30min_R1 1 ASSHSSQTQGGGSVTKK 17 1 P02545-6;P02545;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;Q3BDU5;P02545-2;Q5TCI8 P02545-6;Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C 1 AS(0.444)S(0.444)HS(0.103)S(0.009)QTQGGGSVTKK 60.134 0.022446 4957500 3197.5 2466.1 7119.1 3325.1 2004 2057.3 1884.4 3458.2 3597.7 4411.4 TRUE FALSE 3242.274865 2735.357138 5321.795157 3111.842969 2276.978728 2422.133269 2241.955063 3164.404325 3943.27516 3512.354259 0.923105879 0.778781676 1.515164692 0.885970702 0.64827707 0.689603921 0.638305506 0.90093541 1.122687198 1 11.77822265 -6.50813426 24.94368412 0.807387245 1.069256142 0.176432445 0.227510953 1074.729915 1818153.575 0.067087392 0.095606035 3.10E-07 6.50813426 0.261868897 AS(ph)SLNENVDHSALLK ddPTM_K562_Paclitaxel_30min_R1 1 ASSLNENVDHSALLK 15 0 Q96SB3 Q96SB3 PPP1R9B Neurabin-2 1 AS(0.571)S(0.429)LNENVDHSALLK 119.76 0.00052742 16060000 1635.4 1490.1 2691.2 1669.3 1575.8 1381 1134 1597 1770.2 2376.9 TRUE FALSE 1658.300646 1652.794157 2011.773276 1562.23857 1790.450639 1625.90096 1349.17058 1461.324882 1940.235619 1892.486475 0.876254952 0.873345294 1.063031785 0.825495236 0.946083717 0.859134784 0.712908968 0.772171902 1.025230904 1 10.88606727 -7.358505602 6.728272185 0.848880608 0.91731347 0.013553399 0.106049129 0.691092405 40.98921644 0.037578555 0.033063414 4.38E-08 7.358505602 0.068432862 AS(ph)SPAQCVTPVQTVV ddPTM_K562_Paclitaxel_30min_R1 1 ASSPAQCVTPVQTVV 15 0 Q13614;Q13614-2 Q13614 MTMR2 Myotubularin-related protein 2 1 AS(0.579)S(0.421)PAQCVTPVQTVV 169.09 1.33E-05 19377000 1229.3 1241.4 1176.3 986.95 1175.7 1030.9 1103.7 1180.8 1001.3 1295.6 TRUE FALSE 1246.513993 1376.94025 879.3285167 923.6514444 1335.850245 1213.71564 1313.121313 1080.48367 1097.479339 1031.556009 1.208382271 1.334818699 0.852429252 0.895396311 1.294985666 1.176587243 1.272952028 1.04743093 1.06390669 1 10.01060644 -8.47864947 24.80604033 1.039858129 1.142187679 0.100080602 0.151707361 1144.782932 642055.3435 0.089927621 0.043195407 3.32E-09 8.47864947 0.102329549 AS(ph)SPPDRIDIFGR ddPTM_K562_Paclitaxel_30min_R1 1 ASSPPDRIDIFGR 13 1 Q9NWB6-2;Q9NWB6 Q9NWB6-2 ARGLU1 Arginine and glutamate-rich protein 1 1 AS(0.818)S(0.182)PPDRIDIFGR 82.774 0.019308 590940000 2034.5 1930.8 2552 2555.5 1763.6 2151.3 1799 2041.3 2322.3 2633.9 TRUE FALSE 2062.989277 2141.611274 1907.716037 2391.601668 2003.832178 2532.802849 2140.350859 1867.878824 2545.367291 2097.109734 0.98372977 1.021220415 0.909688228 1.140427527 0.955520899 1.207758854 1.02061939 0.890691981 1.213750168 1 11.03418664 -6.254006235 24.99826241 1.056704066 0.976513572 0.138999865 0.101647703 1277.213047 4295358.851 0.026748907 0.045173679 5.57E-07 6.254006235 -0.080190494 AS(ph)SPPPQPQPPPPPARR ddPTM_K562_Paclitaxel_30min_R1 2 ASSPPPQPQPPPPPARR 17 1 Q9H7P9-3;Q9H7P9;H7BXC7 Q9H7P9-3 PLEKHG2 Pleckstrin homology domain-containing family G member 2 1 AS(0.5)S(0.5)PPPQPQPPPPPARR;AS(0.5)S(0.5)PPPQPQPPPPPARR 130.64 1.83E-07 5624100 3539.2 3433.7 4645.5 3533.3 3519.3 3472.1 3339.1 3814.3 4295.1 4333.4 TRUE FALSE 3588.759719 3808.602978 3472.68607 3306.689952 3998.688242 4087.828184 3972.676794 3490.251407 4707.663546 3450.250701 1.040144624 1.103862678 1.006502533 0.958391212 1.158955852 1.184791639 1.15141685 1.011593565 1.364441008 1 11.75248548 -6.781989455 24.94909815 1.148069974 1.031219163 0.249537343 0.100058342 331.0116609 401867.2823 0.029765483 0.033788668 1.65E-07 6.781989455 -0.116850811 AS(ph)T(ph)IAYLT(ph)SQLHAAKK ddPTM_K562_Paclitaxel_30min_R1 1 ASTIAYLTSQLHAAKK 16 1 Q53HC0-2;Q53HC0 Q53HC0-2 CCDC92 Coiled-coil domain-containing protein 92 3 AS(0.925)T(0.936)IAY(0.207)LT(0.51)S(0.423)QLHAAKK 69.256 0.018336 16165000 2452.6 1974 3001.3 2414.1 1918.6 1899.6 1584.6 2615.5 1563.2 2597.6 TRUE FALSE 2486.943967 2189.527996 2243.584695 2259.270431 2179.945802 2236.467388 1885.269578 2393.29695 1713.352345 2068.207694 1.202463357 1.058659632 1.08479661 1.092380827 1.054026541 1.081355318 0.911547512 1.157184047 0.828423736 1 11.01416536 -2 0.210900888 0.961134937 1.998730749 0.337673666 0.085159463 61.34093667 0.764893865 0.133162948 21.38613478 0.01 2 1.037595811 AS(ph)TPQPAPAGVPALASQHPPEEEVHYHLPVAR ddPTM_K562_Paclitaxel_30min_R1 1 ASTPQPAPAGVPALASQHPPEEEVHYHLPVAR 32 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 AS(0.53)T(0.47)PQPAPAGVPALASQHPPEEEVHYHLPVAR 67.309 7.15E-05 93950000 967.71 727.94 1261.7 993.28 787.89 666.01 764.09 866.6 967.31 993.56 TRUE FALSE 981.2609256 807.4189509 943.1682305 929.5754666 895.2139571 784.1175223 909.0720887 792.9769209 1060.224448 791.0719266 1.240419351 1.020664397 1.192266087 1.175083371 1.131646728 0.991208885 1.149164897 1.002408118 1.340237736 1 9.627665065 -7.011704589 24.26641107 1.095749312 1.150310025 0.063168966 0.108967304 1291.115119 2676794.72 0.033265818 0.03510888 9.73E-08 7.011704589 0.054560713 AS(ph)VRGSSEEDEDART(ph)PDR ddPTM_K562_Paclitaxel_30min_R1 1 ASVRGSSEEDEDARTPDR 18 2 Q8NC56;H7C2Z0 Q8NC56 LEMD2 LEM domain-containing protein 2 2 AS(0.848)VRGS(0.148)S(0.004)EEDEDART(1)PDR 82.8 0.0067547 5833800 1485 1668.6 1630.8 1622.5 1332.2 1002.8 1224 1392.1 1428.4 1368.6 TRUE FALSE 1505.794582 1850.783391 1219.084371 1518.440112 1513.668194 1180.6325 1456.24761 1273.832416 1565.604202 1089.678569 1.38187042 1.698467276 1.118755939 1.393475246 1.389096049 1.083468588 1.336401075 1.16899832 1.436757818 1 10.08968692 -2 0.046789889 0.432818143 2.857313158 0.306450107 0.164268708 677.3865202 2.405001927 30.82818603 121.7393353 0.01 2 2.424495014 AS(ph)WESLDEEWRAPQAGSR ddPTM_K562_Paclitaxel_30min_R1 2 ASWESLDEEWRAPQAGSR 18 1 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 AS(1)WESLDEEWRAPQAGSR;AS(1)WESLDEEWRAPQAGSR 102.79 0.00071614 52362000 566.45 784.32 1129.03 1100.25 888.41 1200.09 999.8 916.73 856.6 1134.68 TRUE FALSE 574.3820476 869.95471 843.9924128 1029.68489 1009.426483 1412.909111 1189.506831 838.8480645 938.8802574 903.4315932 0.635778129 0.96294475 0.934207326 1.139748596 1.117324754 1.563935911 1.316654011 0.928513095 1.039237796 1 9.819271556 -5.366514416 0.976534251 1.178763815 0.449197732 0.447278726 0.175279686 1.695144831 1.46461107 0.065245736 1.259745905 4.30E-06 5.366514416 -0.729566083 ASAGHVAVS(ph)SPTPETGPLQR ddPTM_K562_Paclitaxel_30min_R1 1 ASAGHVAVSSPTPETGPLQR 20 0 P42695 P42695 NCAPD3 Condensin-2 complex subunit D3 1 ASAGHVAVS(0.387)S(0.387)PT(0.227)PETGPLQR 266.99 3.60E-102 12798000 1330 1412.8 1777 1533.8 1215.2 1442.3 1139.4 1642.5 1156.7 1625.2 TRUE FALSE 1348.624103 1567.054282 1328.374372 1435.428933 1380.730814 1698.071654 1355.595202 1502.959373 1267.806203 1293.983348 1.042226784 1.211031258 1.026577641 1.109310205 1.06703909 1.312282462 1.047614101 1.161498234 0.979770107 1 10.33760334 -8.768790517 24.96579304 0.989884955 1.123553138 0.285400335 0.083724133 222.0577442 754115.4671 0.071634769 0.019987029 1.70E-09 8.768790517 0.133668183 ASAGHVAVSS(ph)PTPETGPLQR ddPTM_K562_Paclitaxel_30min_R1 1 ASAGHVAVSSPTPETGPLQR 20 0 P42695 P42695 NCAPD3 Condensin-2 complex subunit D3 1 ASAGHVAVS(0.088)S(0.797)PT(0.115)PETGPLQR 179.7 3.59E-16 50463000 2192.8 1983.2 2776.9 2491.3 1990.3 2279.1 2278 2420.9 2089.3 2722.8 TRUE FALSE 2223.505965 2199.732483 2075.837251 2331.519169 2261.412556 2683.266385 2710.238608 2215.229434 2289.9866 2167.891865 1.02565354 1.014687364 0.957537266 1.075477613 1.043139002 1.237730732 1.250172415 1.021835761 1.056319569 1 11.08207708 -6.725880342 2.222699159 1.121265167 1.004539504 0.222440942 0.081962982 0.432031655 4.378690395 0.028943863 0.038028797 1.88E-07 6.725880342 -0.116725663 ASAGTPSLSAGVS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 ASAGTPSLSAGVSPK 15 0 Q8TEK3-1;Q8TEK3 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 1 ASAGTPSLSAGVS(1)PK;ASAGTPSLSAGVS(1)PK 193.32 1.77E-07 26907000 3944.8 3370.3 6161.8 4383.2 3206.6 3091.6 2528.7 4445.2 4058.9 4854.8 TRUE FALSE 4000.039371 3738.280752 4606.177382 4102.08117 3643.393208 3639.851852 3008.507624 4067.552514 4448.775481 3865.389095 1.034834857 0.967116288 1.191646499 1.0612337 0.942568295 0.941652124 0.778319478 1.052300923 1.150925656 1 11.91639793 -6.749013922 22.72895604 0.96847861 1.065947034 0.140703761 0.102672421 149.9531533 274292.9595 0.032477518 0.041545223 1.78E-07 6.749013922 0.097468424 ASAMPDS(ph)PAEVK ddPTM_K562_Paclitaxel_30min_R1 2 ASAMPDSPAEVK 12 0 O75081;H3BNI7 O75081 CBFA2T3 Protein CBFA2T3 1 ASAMPDS(1)PAEVK;ASAMPDS(1)PAEVK 232.37 2.64E-31 75922000 6820.4 6872.7 12386.1 8846.5 5899.9 5627.4 5206.4 7811.3 5091.4 9322.8 TRUE FALSE 6915.906643 7623.084628 9259.075866 8279.125085 6703.566266 6625.340377 6194.287221 7147.681308 5580.451719 7422.808243 0.931710266 1.026981215 1.247381794 1.115362921 0.903103791 0.892565207 0.834493768 0.962934926 0.751797909 1 12.85774938 -6.79140091 7.29730109 0.885526007 1.088546005 0.476701849 0.097071187 0.160604946 28.90050612 0.030627279 0.035439095 1.62E-07 6.79140091 0.203019998 ASAMPDS(ph)PAEVKTQPR ddPTM_K562_Paclitaxel_30min_R1 1 ASAMPDSPAEVKTQPR 16 1 O75081;H3BNI7 O75081 CBFA2T3 Protein CBFA2T3 1 ASAMPDS(1)PAEVKTQPR 213.71 2.55E-22 14938000 2124.3 1740.2 3941.6 2549.8 2086.6 2092.7 1804.3 2312.4 3081.8 3062.7 TRUE FALSE 2154.046754 1930.200921 2946.494331 2386.26724 2370.830246 2463.810962 2146.656506 2115.947186 3377.82066 2438.520059 0.883341823 0.79154605 1.208312526 0.978571914 0.972241437 1.010371415 0.880311195 0.86771777 1.385192895 1 11.25179012 -8.744786764 24.99993844 1.192596632 0.953953223 0.335921622 0.136832345 236.9782022 355769.6487 0.091288065 0.034294648 1.80E-09 8.744786764 -0.23864341 ASAPERTPS(ph)PAPK ddPTM_K562_Paclitaxel_30min_R1 1 ASAPERTPSPAPK 13 1 Q96P11-2;Q63ZY6;Q3KNT7-3;Q63ZY6-6 Q96P11-2 NSUN5;NSUN5P2 Probable 28S rRNA (cytosine-C(5))-methyltransferase;Putative methyltransferase NSUN5C 1 AS(0.001)APERT(0.285)PS(0.714)PAPK 105.19 0.017939 12421000 1944.4 1662.7 3272.3 2642.3 1672.9 1617.9 1296.8 1862.8 3832.1 2316.7 TRUE FALSE 1971.627599 1844.239209 2446.167394 2472.834704 1900.777302 1904.811849 1542.86103 1704.543513 4200.190327 1844.555268 1.068890498 0.999828653 1.326155652 1.340612963 1.030479994 1.032667267 0.836440662 0.924094573 2.277074805 1 10.8490573 -8.715800701 24.99999968 1.638552695 1.074789613 0.332501817 0.322214273 118.185861 64739.9805 0.205822826 0.077793037 1.92E-09 8.715800701 -0.563763082 ASAPS(ph)PNAQVACDHCLK ddPTM_K562_Paclitaxel_30min_R1 2 ASAPSPNAQVACDHCLK 17 0 A0A3B3IUA7;Q14258 A0A3B3IUA7 TRIM25 E3 ubiquitin/ISG15 ligase TRIM25 1 ASAPS(1)PNAQVACDHCLK;AS(0.086)APS(0.914)PNAQVACDHCLK 139.74 5.11E-09 169727000 7859.2 6789.7 12041.6 8308.7 5679.6 6382.8 6482.6 9674.8 6204.8 10910.4 TRUE FALSE 7969.253048 7531.022407 9001.549151 7775.81717 6453.257676 7514.699961 7712.639509 8852.865352 6800.798764 8686.854491 0.917392257 0.866944694 1.036226538 0.895124602 0.742876226 0.865065711 0.887851813 1.019110584 0.782883928 1 13.08461816 -10.82224059 14.12036796 0.999999997 0.892753802 0.128258945 0.085530453 0 0 0.084209325 0.020423761 1.51E-11 10.82224059 -0.107246195 ASAS(ph)LPAT(ph)S(ph)SACT(ph)RCTR ddPTM_K562_Paclitaxel_30min_R1 1 ASASLPATSSACTRCTR 17 1 Q96HZ4-4 Q96HZ4-4 4 AS(0.011)AS(0.951)LPAT(0.753)S(0.753)S(0.53)ACT(0.647)RCT(0.354)R 46.796 0.031178 0 243.72 237.24 246.21 334.91 252.05 180.42 225.38 248.57 220.75 237.65 TRUE FALSE 247.1328319 263.1426655 184.0512404 313.4303716 286.3834772 212.4149538 268.1446784 227.452427 241.9540238 189.2167996 1.30608293 1.390693988 0.972700314 1.656461648 1.513520353 1.122600923 1.417129341 1.202073111 1.278713224 1 7.563896373 -9.448736288 0.72533735 0.997127364 1.341615562 0.22818995 0.182453661 2.341232451 2.161313646 0.199052325 0.067682642 3.56E-10 9.448736288 0.344488198 ASASRPQPAPADGADPPPAEEPEARPDGEGS(ph)PGK ddPTM_K562_Paclitaxel_30min_R1 3 ASASRPQPAPADGADPPPAEEPEARPDGEGSPGK 34 2 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 ASASRPQPAPADGADPPPAEEPEARPDGEGS(1)PGK;ASASRPQPAPADGADPPPAEEPEARPDGEGS(1)PGK;ASASRPQPAPADGADPPPAEEPEARPDGEGS(1)PGK 50.899 0.0018842 156160000 8650.4 7628.6 15892.6 10531 8030.3 6667.51 6514.5 10048.1 6070.22 11992.9 TRUE FALSE 8771.532289 8461.516346 11880.31657 9855.588795 9124.162814 7849.899282 7750.592367 9194.451187 6653.291753 9548.740397 0.918606217 0.886139532 1.244176308 1.032134961 0.95553575 0.822087412 0.811687411 0.96289676 0.696771666 1 13.22109472 -7.040549186 3.587119077 0.854192044 1.025193621 0.293823125 0.118179391 0.303283674 8.045776996 0.040400688 0.042489859 9.11E-08 7.040549186 0.171001577 ASATCSSATAAASSGLEEWTSRS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 ASATCSSATAAASSGLEEWTSRSPR 25 1 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3;Q96G74-4 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 ASATCSSATAAASS(0.004)GLEEWT(0.008)S(0.188)RS(0.8)PR;ASATCSSATAAASSGLEEWT(0.018)S(0.188)RS(0.793)PR 98.3 1.59E-05 41131000 1201.52 975.32 1065.55 1405.81 1160.14 1021.94 929.43 1519.33 1240.35 1458.96 TRUE FALSE 1218.344987 1081.808736 796.5387239 1315.647639 1318.170709 1203.16671 1105.784491 1390.253433 1359.49116 1161.623151 1.048829808 0.931290612 0.685711819 1.132594196 1.134766217 1.03576337 0.951930486 1.196819667 1.170337521 1 10.1819264 -6.303373437 24.99963373 1.091079785 0.892878441 0.411118785 0.109784795 478.109226 285031.038 0.031952483 0.047393631 4.97E-07 6.303373437 -0.198201343 ASAVS(ph)ELSPRERS(ph)PALKS(ph)PLQSVVVR ddPTM_K562_Paclitaxel_30min_R1 1 ASAVSELSPRERSPALKSPLQSVVVR 26 3 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 3 AS(0.023)AVS(0.53)ELS(0.501)PRERS(0.945)PALKS(0.953)PLQS(0.048)VVVR 45.546 0.021158 35459000 1702.4 1490.8 2496.4 1768.4 1186.5 1302 940.2 1433.5 3623.9 1795.8 TRUE FALSE 1726.238852 1653.570586 1866.152945 1654.982739 1348.121388 1532.891419 1118.598042 1311.715227 3971.991787 1429.814974 1.20731625 1.156492704 1.305170934 1.157480352 0.942864225 1.072090758 0.782337618 0.917402077 2.777976073 1 10.48161275 -8.710440032 24.99998493 1.889016606 1.067996014 0.375898223 0.423327269 84.9464986 41640.85583 0.262516524 0.099221592 1.95E-09 8.710440032 -0.821020592 ASAVSELS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 ASAVSELSPR 10 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR;ASAVSELS(1)PR 129.74 0.00093136 12073800000 11580.9 10517.1 13518.8 12188.5 10847.8 9783.2 10908.7 12226.9 10217 12843.2 TRUE FALSE 11743.06833 11665.39254 10105.81174 11406.78416 12325.45401 11518.11316 12978.56888 11188.14853 11198.3885 10225.74879 1.148382243 1.140786145 0.988271074 1.115496224 1.205335107 1.126383348 1.269204744 1.094115331 1.095116723 1 13.31991887 -3.784275549 2.328614964 1.12256214 20.66689434 0.007848352 0.079595685 9832.461131 90.57936789 0.021191092 1024010.728 0.000164333 3.784275549 19.5443322 ASAVSELS(ph)PRER ddPTM_K562_Paclitaxel_30min_R1 1 ASAVSELSPRER 12 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 ASAVS(0.059)ELS(0.941)PRER 116.58 0.011189 56942000 2089.8 1894.7 1924.6 2168.6 1605.8 1576.8 1645.6 1512.6 3439.3 1761.7 TRUE FALSE 2119.063648 2101.569753 1438.710927 2029.515702 1824.537146 1856.423341 1957.844009 1384.095189 3769.660132 1402.664573 1.510741547 1.498269646 1.025698485 1.446900236 1.300765116 1.323497703 1.395803421 0.986761351 2.687499353 1 10.45395434 ASAVTAMGQLS(ph)SQGLHAPTSPEHAEAR ddPTM_K562_Paclitaxel_30min_R1 1 ASAVTAMGQLSSQGLHAPTSPEHAEAR 27 0 Q6PJG6 Q6PJG6 BRAT1 BRCA1-associated ATM activator 1 1 ASAVTAMGQLS(0.477)S(0.351)QGLHAPT(0.086)S(0.086)PEHAEAR 79.426 3.53E-05 45126000 2354.3 2094.5 2023.9 1687.2 1590.6 1808.7 1527.9 1995.6 1574.9 1934.7 TRUE FALSE 2387.267464 2323.184593 1512.941414 1578.990544 1807.266649 2129.44755 1817.811049 1826.061324 1726.176182 1540.407078 1.549764019 1.508162762 0.982169866 1.025047577 1.173239642 1.382392732 1.180084846 1.185440751 1.12059741 1 10.58909594 -5.720415053 11.35566945 1.146227001 1.529790124 0.670263822 0.111215002 0.428786706 116.2701333 0.030604034 0.080721309 1.90E-06 5.720415053 0.383563123 ASAVTAMGQLSSQGLHAPT(ph)SPEHAEAR ddPTM_K562_Paclitaxel_30min_R1 3 ASAVTAMGQLSSQGLHAPTSPEHAEAR 27 0 Q6PJG6 Q6PJG6 BRAT1 BRCA1-associated ATM activator 1 1 ASAVTAMGQLSSQGLHAPT(0.5)S(0.5)PEHAEAR;ASAVTAMGQLSSQGLHAPT(0.5)S(0.5)PEHAEAR;ASAVTAMGQLSSQGLHAPT(0.5)S(0.5)PEHAEAR 179.92 1.24E-40 105009000 2596.32 2390.08 2947.77 2139.64 2275.11 2362.35 2488.01 3632.56 2253.18 3318.39 TRUE FALSE 2632.67649 2651.037017 2203.569006 2002.413067 2585.0185 2781.279603 2960.096909 3323.951354 2469.608006 2642.100296 0.996433214 1.003382431 0.834021709 0.757886848 0.978395295 1.052677526 1.12035751 1.258071603 0.934713951 1 11.36746952 -7.195192976 2.997512957 1.095697688 0.899150299 0.373443638 0.104524644 0.269877189 4.781873633 0.038904287 0.037813329 6.38E-08 7.195192976 -0.196547389 ASAVTAMGQLSSQGLHAPTS(ph)PEHAEAR ddPTM_K562_Paclitaxel_30min_R1 1 ASAVTAMGQLSSQGLHAPTSPEHAEAR 27 0 Q6PJG6 Q6PJG6 BRAT1 BRCA1-associated ATM activator 1 1 ASAVTAMGQLS(0.002)S(0.005)QGLHAPT(0.163)S(0.831)PEHAEAR 108.94 1.79E-09 42900000 1383.9 1276.7 1650.1 1701.4 1175.1 1436 1098.6 1700.9 1116.8 1898.1 TRUE FALSE 1403.27887 1416.094424 1233.511847 1592.279819 1335.168515 1690.654438 1307.053615 1556.397928 1224.07363 1511.266178 0.928545143 0.937025154 0.816210847 1.053606467 0.883476739 1.118700638 0.8648732 1.029863535 0.809965609 1 10.56154207 -6.258440101 24.99916013 0.965765526 0.898236867 0.11058436 0.093145827 614.5530087 5122308.214 0.023888182 0.039196362 5.52E-07 6.258440101 -0.06752866 ASDPQS(ph)PPQVSR ddPTM_K562_Paclitaxel_30min_R1 1 ASDPQSPPQVSR 12 0 Q7L7X3-2;Q7L7X3-3;Q7L7X3 Q7L7X3-2 TAOK1 Serine/threonine-protein kinase TAO1 1 ASDPQS(0.997)PPQVS(0.003)R 100.73 0.0095678 9955000 1727.6 1702.8 2119.3 2036.2 1516.7 1589.2 1476.5 1968.5 1839.8 2416.9 TRUE FALSE 1751.79173 1888.717462 1584.256504 1905.607246 1723.300218 1871.022307 1756.658167 1801.263638 2016.52101 1924.334453 0.910336416 0.981491268 0.823275029 0.990268216 0.895530512 0.9722958 0.91286531 0.936044997 1.047905683 1 10.91014385 -8.719767825 7.963540301 1.023780932 0.92787005 0.397309348 0.047400113 0.190632415 31.8497788 0.030449093 0.011158198 1.91E-09 8.719767825 -0.095910881 ASDS(ph)MDSLYSGQSSSSGITSCSDGTSNR ddPTM_K562_Paclitaxel_30min_R1 2 ASDSMDSLYSGQSSSSGITSCSDGTSNR 28 0 Q9NSI8;A0A2R8Y4K8;Q9NSI8-3;S6FRS6 Q9NSI8 SAMSN1 SAM domain-containing protein SAMSN-1 1 AS(0.01)DS(0.89)MDS(0.1)LYSGQSSSSGITSCSDGTSNR;AS(0.013)DS(0.964)MDS(0.023)LYSGQSSSSGITSCSDGTSNR 210.46 6.60E-51 75858000 2396.6 2597.8 3183.3 2452.9 2640.2 2192.51 2098.2 2925.8 1817.36 3201.3 TRUE FALSE 2430.159794 2881.436589 2379.636544 2295.581973 2999.839939 2581.320864 2496.322497 2677.235028 1991.925548 2548.873303 0.953425104 1.130474624 0.933603307 0.900626159 1.176927835 1.012730159 0.979382731 1.050360183 0.78149257 1 11.31564395 -8.737088685 24.9986638 0.890746067 1.018211187 0.222387099 0.094562182 284.9299039 292513.4607 0.061932905 0.023384172 1.83E-09 8.737088685 0.12746512 ASEDTTSGS(ph)PPK ddPTM_K562_Paclitaxel_30min_R1 1 ASEDTTSGSPPK 12 0 G3V1C3;Q9BZZ5-2;Q9BZZ5;H0YER7;Q9BZZ5-1;Q9BZZ5-5;Q9BZZ5-6 G3V1C3 API5 Apoptosis inhibitor 5 1 ASEDT(0.001)T(0.055)S(0.022)GS(0.922)PPK 110.38 0.0058654 10433000 1414.8 1237.7 2638.7 1909.2 1343.2 1297.7 1132.1 2139.5 1474.9 2291 TRUE FALSE 1434.611565 1372.836272 1972.52755 1786.752457 1526.166581 1527.828874 1346.910065 1957.736121 1616.570735 1824.092942 0.786479423 0.752613115 1.081374476 0.979529286 0.836671501 0.8375828 0.73839991 1.073265553 0.886232657 1 10.83296353 -15 0.01634706 2.0908686 4.15E-15 0.10946485 0.114798148 13203.20928 16.3260435 1333.911572 813.7331704 1.00E-15 15 -2.0908686 ASEDTTSGS(ph)PPKK ddPTM_K562_Paclitaxel_30min_R1 4 ASEDTTSGSPPKK 13 1 G3V1C3;Q9BZZ5-2;Q9BZZ5;H0YER7;Q9BZZ5-1;Q9BZZ5-5;Q9BZZ5-6 G3V1C3 API5 Apoptosis inhibitor 5 1 ASEDT(0.002)TS(0.038)GS(0.959)PPKK;ASEDT(0.016)T(0.001)S(0.006)GS(0.978)PPKK;ASEDT(0.001)TS(0.01)GS(0.989)PPKK;ASEDT(0.08)T(0.031)S(0.031)GS(0.859)PPKK 177.88 2.89E-31 49784100 12003.7 8961.3 27696.8 13475.9 9418.2 7548.7 7193.48 13431.8 9734.9 17806.8 TRUE FALSE 12171.78883 9939.725039 20704.40029 12611.61609 10701.11829 8887.355956 8558.405278 12290.68475 10669.98064 14177.76439 0.858512563 0.701078447 1.460343093 0.88953489 0.754781784 0.626851718 0.603649845 0.866898646 0.752585552 1 13.79134244 -6.597859746 5.064301583 0.748084496 1.005614091 0.20425351 0.208848719 0.304640475 14.2185907 0.063556618 0.083184525 2.52E-07 6.597859746 0.257529596 ASEGAS(ph)SESLLSVPGQK ddPTM_K562_Paclitaxel_30min_R1 1 ASEGASSESLLSVPGQK 17 0 Q8TDJ6-3;Q8TDJ6 Q8TDJ6-3 DMXL2 DmX-like protein 2 1 AS(0.001)EGAS(0.908)S(0.088)ES(0.003)LLSVPGQK 135.61 1.12E-07 13403000 814.9 799.94 1628.3 1237.2 788.1 961.69 686.38 1206.1 1116.5 1290.7 TRUE FALSE 826.3111142 887.2801544 1217.215526 1157.85153 895.4525626 1132.232219 816.6170219 1103.634277 1223.744814 1027.654632 0.804074724 0.863403061 1.184459729 1.126693243 0.871355546 1.101763359 0.794641504 1.073935 1.19081331 1 10.00513978 -5.594168632 8.22763122 1.035503734 0.818705482 0.326087983 0.121225109 0.269122006 27.11315627 0.031395042 0.08377283 2.55E-06 5.594168632 -0.216798252 ASEPLLS(ph)PPPFGESR ddPTM_K562_Paclitaxel_30min_R1 4 ASEPLLSPPPFGESR 15 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 ASEPLLS(1)PPPFGESR;ASEPLLS(1)PPPFGESR;ASEPLLS(1)PPPFGESR;AS(0.112)EPLLS(0.888)PPPFGESR 253.06 5.67E-73 215391000 3532.67 3512.12 4077.02 3218.35 2895.39 2524.3 2910.62 3721.62 3153.11 3662.18 TRUE FALSE 3582.138279 3895.585139 3047.725877 3011.939436 3289.791137 2971.949162 3462.894951 3405.445151 3455.980304 2915.825706 1.228515913 1.336014403 1.045235959 1.032962783 1.128253699 1.019247878 1.187620695 1.16791794 1.185249275 1 11.50968877 -5.761001401 24.99998895 1.101266698 1.282265185 0.524331664 0.070884186 8.917546684 508861.3838 0.018857127 0.044070209 1.73E-06 5.761001401 0.180998487 ASESSKPWPDATYGTGS(ph)ASR ddPTM_K562_Paclitaxel_30min_R1 2 ASESSKPWPDATYGTGSASR 20 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 ASESSKPWPDATYGT(0.231)GS(0.723)AS(0.046)R;ASESSKPWPDATYGT(0.009)GS(0.823)AS(0.169)R 120.8 1.29E-05 69164000 6261.1 5377.9 9536.6 5846.5 5058.1 4793.4 4436.8 6792.8 5806.6 8291 TRUE FALSE 6348.774717 5965.077309 7128.967383 5471.531658 5747.098854 5643.442187 5278.659638 6215.709241 6364.349875 6601.289649 0.961747636 0.903623023 1.079935552 0.828857988 0.870602437 0.854899949 0.799640664 0.941590139 0.964107048 1 12.68853219 -6.283379526 24.99968665 0.885242831 0.973954199 0.232842573 0.071086805 1110.571883 1265437.912 0.020135513 0.029893466 5.21E-07 6.283379526 0.088711368 ASET(ph)PPPVAQPKPEAPHPGLETTLQER ddPTM_K562_Paclitaxel_30min_R1 1 ASETPPPVAQPKPEAPHPGLETTLQER 27 1 Q6P1N0;Q6P1N0-2 Q6P1N0 CC2D1A Coiled-coil and C2 domain-containing protein 1A 1 AS(0.133)ET(0.867)PPPVAQPKPEAPHPGLETTLQER 60.834 0.0037098 15330000 911.17 775.83 1637.7 1009.9 794.69 746.8 864.04 1156.6 782.63 1079.1 TRUE FALSE 923.9291912 860.5377431 1224.24238 945.1295341 902.9402322 879.2344944 1027.987079 1058.339611 857.8051084 859.1788277 1.075363081 1.001581644 1.424898218 1.100038204 1.050933989 1.023342832 1.19647627 1.231803644 0.998401125 1 9.746814632 -6.474758516 24.99609428 1.095702475 1.169337146 0.077906576 0.125231798 1232.065577 639996.1044 0.036307262 0.053850681 3.35E-07 6.474758516 0.073634671 ASETVSEASPGS(ph)TASQTGVPTQVVQQVQGTQQR ddPTM_K562_Paclitaxel_30min_R1 1 ASETVSEASPGSTASQTGVPTQVVQQVQGTQQR 33 0 P22670 P22670 RFX1 MHC class II regulatory factor RFX1 1 AS(0.001)ET(0.003)VS(0.008)EAS(0.202)PGS(0.233)T(0.233)AS(0.233)QT(0.083)GVPT(0.003)QVVQQVQGTQQR 75.887 1.82E-05 9688000 306.78 228.77 434.54 333.46 353.81 303.58 318.84 361.92 208.79 313.82 TRUE FALSE 311.0758665 253.7478823 324.8350027 312.0733681 402.0049121 357.4156505 379.3382255 331.172637 228.8452124 249.8633117 1.244984165 1.015546782 1.300050817 1.248976354 1.608899319 1.430444702 1.518182973 1.325415223 0.915881611 1 7.964995271 -8.756071551 24.16347775 0.957940683 1.3399868 0.488398795 0.154972694 72.84493357 327932.6127 0.125451984 0.044202504 1.75E-09 8.756071551 0.382046117 ASFDHS(ph)PDSLPLR ddPTM_K562_Paclitaxel_30min_R1 1 ASFDHSPDSLPLR 13 0 H0Y6H0;Q8NB78-2;Q8NB78 H0Y6H0 KDM1B Lysine-specific histone demethylase 1B 1 AS(0.001)FDHS(0.998)PDS(0.002)LPLR 82.942 0.019922 28333000 2469.5 2535.3 3453.5 2785.3 2545.9 2255 2048.6 2506.8 2229.4 2948.6 TRUE FALSE 2504.080619 2812.112628 2581.621213 2606.663325 2892.694682 2654.892588 2437.311156 2293.831693 2443.543831 2347.673701 1.066622085 1.19782942 1.099650778 1.110317555 1.232153634 1.130860982 1.038181394 0.977065804 1.040836224 1 11.19701619 -7.810364991 3.713564805 1.007292355 1.144191931 0.636882851 0.046874186 0.14222668 4.023472525 0.020203758 0.013624053 1.55E-08 7.810364991 0.136899575 ASGQAFELILS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 13 ASGQAFELILSPR 13 0 A2A2D0;P16949;P16949-2 A2A2D0 STMN1 Stathmin 1 ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR;ASGQAFELILS(1)PR 172.26 3.02E-31 11874210000 36194.08 33260.93 36605.69 32269.23 27009.95 25370.302 25664.782 29918.65 28457.43 33199.87 TRUE FALSE 36700.90879 36892.47082 27364.13083 30199.62602 30689.16247 29869.36884 30534.54041 27376.87394 31190.8933 26433.71827 1.388412648 1.39565953 1.035197945 1.142466062 1.160985456 1.129972278 1.155136031 1.035680023 1.17996617 1 14.69009175 -5.752105757 24.99972221 1.112230419 1.392036266 0.79235902 0.058694946 78.18017071 209398.0638 0.014160646 0.036390286 1.77E-06 5.752105757 0.279805847 ASHDPLVPNSS(ph)PLPTNGISGSPESFASSLDGSGHAGPEGSR ddPTM_K562_Paclitaxel_30min_R1 1 ASHDPLVPNSSPLPTNGISGSPESFASSLDGSGHAGPEGSR 41 0 O95402;B8ZZF3 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 ASHDPLVPNS(0.356)S(0.448)PLPT(0.173)NGIS(0.011)GS(0.011)PESFASSLDGSGHAGPEGSR 82.331 5.46E-13 22082000 1435.6 1593 1754.9 1651.6 1202.8 1495.9 1353.9 1312.3 907.96 1843.7 TRUE FALSE 1455.702829 1766.929127 1311.853791 1545.673768 1366.641724 1761.176862 1610.795457 1200.811924 995.1736149 1467.952928 0.991654978 1.203668792 0.893662028 1.052945049 0.930984705 1.199750229 1.097307295 0.818018004 0.67793292 1 10.51958999 -8.269645686 22.52387847 0.81098146 1.053497311 0.412999243 0.119883938 144.5169451 396647.3271 0.061964342 0.030710614 5.37E-09 8.269645686 0.242515851 ASHS(ph)S(ph)ER ddPTM_K562_Paclitaxel_30min_R1 1 ASHSSER 7 0 F1T0I1;O15027-2;O15027-4;O15027-3;O15027;O15027-5;A0A3F2YNX0;A0A3F2YNZ0 F1T0I1 SEC16A Protein transport protein Sec16A 2 AS(0.016)HS(0.986)S(0.999)ER 54.765 0.027945 10221000 650.24 577.49 525.6 344.31 390.59 337.24 372.08 372.26 406.93 391.65 TRUE FALSE 659.3453662 640.5423111 392.9057795 322.2274977 443.7949707 397.0447789 442.6802376 340.6341894 446.0174447 311.831515 2.114428255 2.054129491 1.259993812 1.033338461 1.423188322 1.273267004 1.419613529 1.092366143 1.430315485 1 8.28462293 -5.755803974 6.461835867 1.249881954 2.093492671 0.833665042 0.150618144 0.047583272 8.592756176 0.037130301 0.090266198 1.75E-06 5.755803974 0.843610717 ASIGQS(ph)PGLPSTTFK ddPTM_K562_Paclitaxel_30min_R1 2 ASIGQSPGLPSTTFK 15 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 ASIGQS(0.997)PGLPS(0.002)T(0.001)TFK;AS(0.399)IGQS(0.591)PGLPS(0.004)T(0.006)T(0.001)FK 151.41 1.28E-05 35784000 8792.7 7207 13500.3 8616.9 6817 6374.1 6682.4 9608.7 6554.3 13196 TRUE FALSE 8915.824928 7993.884633 10091.9823 8064.250602 7745.590813 7504.457138 7950.350516 8792.380959 7183.8698 10506.64796 0.848588909 0.760840628 0.96053302 0.767537909 0.73720856 0.714257979 0.756697145 0.83683978 0.683745171 1 13.35901484 -5.231788943 21.43401797 0.794564226 0.848589478 0.01489049 0.098416447 6853.866679 4954029.778 0.023628559 1.736856467 5.86E-06 5.231788943 0.054025253 ASLLHSMPTHS(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 2 ASLLHSMPTHSSPR 14 0 E3W994;J3KR49;O75122;E7ERI8;E7EW49;O75122-3;A0A0U1RQI6;H7C4X8 E3W994 CLASP2 CLIP-associating protein 2 1 ASLLHSMPT(0.018)HS(0.81)S(0.172)PR;ASLLHSMPTHS(0.5)S(0.5)PR 174.4 2.87E-06 467998000 3939.6 3802 4667 4281.9 3741.8 3761.4 4182.7 5083.2 3736.3 5075.5 TRUE FALSE 3994.766555 4217.115218 3488.758129 4007.278099 4251.496509 4428.431477 4976.34549 4651.350432 4095.188309 4041.110314 0.988531924 1.0435536 0.863316727 0.99162799 1.052061483 1.095845234 1.231430251 1.151008033 1.013381965 1 11.98053602 -6.944386802 2.413086241 1.115275602 0.967902331 0.38141155 0.074889398 0.28537175 3.369953629 0.026619637 0.030101901 1.14E-07 6.944386802 -0.147373271 ASLLHSMPTHSS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 ASLLHSMPTHSSPR 14 0 E3W994;J3KR49;O75122;E7ERI8;E7EW49;O75122-3;A0A0U1RQI6;H7C4X8 E3W994 CLASP2 CLIP-associating protein 2 1 ASLLHSMPT(0.009)HS(0.144)S(0.847)PR 204.67 7.73E-13 451690000 3446 3041.2 3620.4 3551.9 2674.8 3046.4 2935.2 3215 2985.4 3741.1 TRUE FALSE 3494.254632 3373.248501 2706.385243 3324.097032 3039.153045 3586.636266 3492.138877 2941.865683 3272.161009 2978.661766 1.173095472 1.132471145 0.90859099 1.115969953 1.020308207 1.204109949 1.172385169 0.987646773 1.098533928 1 11.5404486 -9.025404171 1.284228303 1.005840933 1.093325429 0.086349581 0.088048172 1.387181279 5.129385972 0.086154312 0.026477495 9.43E-10 9.025404171 0.087484496 ASLLT(ph)DEEDVDMALDQR ddPTM_K562_Paclitaxel_30min_R1 3 ASLLTDEEDVDMALDQR 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 AS(0.003)LLT(0.997)DEEDVDMALDQR;ASLLT(1)DEEDVDMALDQR;ASLLT(1)DEEDVDMALDQR 270.79 3.21E-112 65263300 4611.7 4204.4 5842.2 4580.3 3721.8 3597.6 3589.4 4487.4 4822.9 4891.7 TRUE FALSE 4676.278028 4663.45061 4367.264355 4286.540059 4228.772171 4235.583847 4270.469912 4106.167361 5286.161094 3894.768855 1.200656111 1.197362612 1.121315415 1.100589077 1.085756903 1.087505833 1.096462992 1.054277549 1.357246422 1 11.927322 -5.780152149 4.522768911 1.111260057 1.200878433 0.133224087 0.088142938 0.360246696 17.58962335 0.022266699 0.054466271 1.66E-06 5.780152149 0.089618377 ASLPAGLVGT(ph)PPES(ph)PSEPREDVLGFLPGPR ddPTM_K562_Paclitaxel_30min_R1 1 ASLPAGLVGTPPESPSEPREDVLGFLPGPR 30 1 K7EKN5;A0A590UJ23;A0A590UJ36;A6NDB9 K7EKN5 PALM3 Paralemmin-3 2 AS(0.001)LPAGLVGT(0.973)PPES(0.725)PS(0.3)EPREDVLGFLPGPR 61.709 0.003644 24959000 1605.7 1326.4 2142.1 1354.8 1380.1 1158.8 1534 1727 1467.9 2038.8 TRUE FALSE 1628.184754 1471.220838 1601.300362 1267.909192 1568.092985 1364.29691 1825.068492 1580.28057 1608.898354 1623.291441 1.003014439 0.906319593 0.986452784 0.781073047 0.965995967 0.840450997 1.124301186 0.973503913 0.991133393 1 10.66470632 -7.75086496 24.99999618 1.020026632 0.913171005 0.345671494 0.073000703 240.0370181 567495.3498 0.027127993 0.020786773 1.77E-08 7.75086496 -0.106855626 ASLPAGLVGT(ph)PPESPSEPREDVLGFLPGPR ddPTM_K562_Paclitaxel_30min_R1 1 ASLPAGLVGTPPESPSEPREDVLGFLPGPR 30 1 K7EKN5;A0A590UJ23;A0A590UJ36;A6NDB9 K7EKN5 PALM3 Paralemmin-3 1 AS(0.002)LPAGLVGT(0.867)PPES(0.076)PS(0.055)EPREDVLGFLPGPR 67.368 0.0023315 34165000 470.72 533.3 646.48 616.25 346.88 427.28 626.21 627.6 448.7 585.35 TRUE FALSE 477.3115323 591.5274975 483.2681284 576.7264832 394.1309287 503.0521087 745.0300785 574.2814626 491.7996398 466.0553487 1.024152032 1.269221562 1.036932909 1.237463501 0.845674081 1.07938276 1.598587122 1.232217298 1.055238699 1 8.864357489 ASLPQAATFGELS(ph)GPLKPGSPYRPPVPR ddPTM_K562_Paclitaxel_30min_R1 1 ASLPQAATFGELSGPLKPGSPYRPPVPR 28 2 Q14687-3;Q14687;Q14687-2;H0Y613 Q14687-3 GSE1 Genetic suppressor element 1 1 ASLPQAAT(0.001)FGELS(0.439)GPLKPGS(0.439)PY(0.121)RPPVPR 46.106 0.016562 23672000 486.03 539.45 793.78 417.33 490.06 317.16 428.86 657.63 520.75 739.05 TRUE FALSE 492.8359195 598.3489753 593.3804217 390.5643217 556.8144688 373.4038729 510.2339462 601.7602267 570.7703643 588.4312043 0.837542122 1.016854597 1.008410868 0.663738291 0.946269444 0.63457524 0.86710892 1.022651794 0.969986568 1 9.200729944 -8.227517292 7.671677263 0.997227135 0.853353145 0.231114102 0.120432075 0.392159185 78.65161361 0.059880248 0.033885489 5.92E-09 8.227517292 -0.14387399 ASLS(ph)YEEGHPSHSETDLLQR ddPTM_K562_Paclitaxel_30min_R1 2 ASLSYEEGHPSHSETDLLQR 20 0 A0A3B3ISY4;A0A3B3IRW6 A0A3B3ISY4 1 AS(0.15)LS(0.645)Y(0.204)EEGHPS(0.001)HSETDLLQR;AS(0.183)LS(0.765)Y(0.052)EEGHPSHSETDLLQR 95.926 0.00059324 48098000 2512.13 2128.74 2708.2 2093.01 1860.94 1806.59 1694.47 2076.45 2270.07 2402.6 TRUE FALSE 2547.307571 2361.163032 2024.481415 1958.773707 2114.431534 2126.963371 2015.986837 1900.042612 2488.120366 1912.948801 1.331613041 1.234305398 1.058304025 1.023955113 1.105325732 1.111876789 1.053863457 0.993253249 1.300672744 1 10.90158255 -5.600394507 3.397547428 1.079648702 1.317713519 0.49946963 0.083297436 0.179865678 3.981225198 0.020891775 0.072345095 2.51E-06 5.600394507 0.238064817 ASLYVGDLHPEVTEAMLY(ph)EK ddPTM_K562_Paclitaxel_30min_R1 1 ASLYVGDLHPEVTEAMLYEK 20 0 Q5JQF8 Q5JQF8 PABPC1L2A Polyadenylate-binding protein 1-like 2 1 ASLYVGDLHPEVTEAMLY(0.999)EK 47.68 0.028545 17433000 1355.5 1414.3 1316.9 1711.1 1320.9 1338.5 1703.1 2047.1 1367.9 1809.7 TRUE FALSE 1374.481182 1568.718057 984.4323078 1601.357705 1500.828943 1575.864182 2026.254334 1873.186077 1499.292907 1440.882147 0.95391645 1.088720587 0.683215008 1.111373132 1.041604233 1.093680136 1.406259588 1.300027266 1.040538194 1 10.49273662 -6.991523796 1.566322092 1.204816141 0.938238898 0.299079697 0.153969456 0.435353917 2.180130703 0.061428935 0.068780768 1.02E-07 6.991523796 -0.266577242 ASMSEFLES(ph)EDGEVEQQR ddPTM_K562_Paclitaxel_30min_R1 6 ASMSEFLESEDGEVEQQR 18 0 J3QQW9;Q15022 J3QQW9 SUZ12 Polycomb protein SUZ12 1 ASMSEFLES(1)EDGEVEQQR;ASMSEFLES(1)EDGEVEQQR;ASMSEFLES(1)EDGEVEQQR;ASMSEFLES(1)EDGEVEQQR;ASMSEFLES(1)EDGEVEQQR;ASMSEFLES(1)EDGEVEQQR 226.06 7.32E-33 444824000 10230.31 9062.61 13141.43 10880.93 9365.73 8717.38 9577.33 10391.04 11406.67 12889.58 TRUE FALSE 10373.5659 10052.09641 9823.713465 10183.07585 10641.50099 10263.28494 11394.57837 9508.256293 12502.33162 10262.67652 1.010805113 0.979480975 0.957227235 0.992243674 1.036912833 1.000059285 1.110293046 0.92648894 1.21823304 1 13.32511942 -7.1805932 1.049065676 1.059201427 0.981038925 0.164349236 0.072910032 0.937070332 2.178282251 0.036403212 0.035659119 6.60E-08 7.1805932 -0.078162502 ASNGDAWVEAHGK ddPTM_K562_Paclitaxel_30min_R1 1 ASNGDAWVEAHGK 13 0 P38646;D6RJI2;A0A3B3ITI4 P38646 HSPA9 "Stress-70 protein, mitochondrial" 0 108.23 0.010652 7223500 4081.7 3308.2 5892.9 4199.1 3619.2 3182.4 3106.3 4225.9 3814.3 5462.7 FALSE TRUE 4138.856393 3669.400464 4405.164513 3929.78852 4112.196314 3746.753957 3695.704209 3866.883418 4180.680558 4349.398741 0.951592769 0.843656947 1.01282149 0.903524545 0.945463168 0.861441818 0.849704621 0.889061603 0.961208849 1 12.08660026 -8.955556876 4.20074163 0.999502619 0.906521418 0.276278905 0.049424977 0.237575728 9.050053957 0.047803515 0.012552903 1.11E-09 8.955556876 -0.092981201 ASNGDT(ph)PTHEDLTK ddPTM_K562_Paclitaxel_30min_R1 1 ASNGDTPTHEDLTK 14 0 P11171;P11171-7;A0A2R8YCW8;A0A2R8Y5G2;A0A2R8Y5Z6;P11171-2;A0A2U3TZH6;A0A3B3IU06;P11171-5;A0A2R8Y570;A0A2R8Y6G5;A0A3B3IUD6;A0A2R8YFR9;A0A3B3ITC5;A0A2R8YFU8 P11171 EPB41 Protein 4.1 1 AS(0.006)NGDT(0.497)PT(0.497)HEDLTK 104.26 0.011931 7684100 1993.8 1245.9 3372.8 2292.1 2016.4 1679.8 1565.3 2658.6 1673.8 2966.4 TRUE FALSE 2021.719351 1381.931575 2521.294926 2145.094965 2291.067818 1977.688944 1862.307504 2432.735336 1834.575969 2361.846052 0.855991164 0.585106542 1.067510274 0.908228106 0.970032664 0.837348795 0.788496567 1.030014354 0.776755101 1 11.20569922 -5.758723275 24.99999893 0.916759927 0.720548894 0.342696247 0.11155279 73.88445101 680022.6763 0.027276656 0.065757017 1.74E-06 5.758723275 -0.196211033 ASNTS(ph)TPTKGNTETSASASQTNHVK ddPTM_K562_Paclitaxel_30min_R1 2 ASNTSTPTKGNTETSASASQTNHVK 25 1 A0A2R8Y7W5;A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7Y0;A0A2R8YCQ1;A0A2R8YD28 A0A2R8Y7W5 CDK13 Cyclin-dependent kinase 13 1 AS(0.065)NT(0.065)S(0.305)T(0.229)PT(0.229)KGNT(0.099)ET(0.002)S(0.006)ASASQTNHVK;AS(0.077)NT(0.16)S(0.407)T(0.275)PT(0.076)KGNT(0.003)ET(0.001)S(0.001)ASASQTNHVK 77.045 0.0001567 16234200 1367.75 1112.95 4110.1 2017.8 1303.29 1384.31 1058.56 2088.05 1734.57 2898.7 TRUE FALSE 1386.90272 1234.465645 3072.454422 1888.387339 1480.820163 1629.797942 1259.416234 1910.657119 1901.183199 2307.943349 0.600925807 0.534876926 1.331252097 0.818212172 0.641618939 0.706168955 0.545687672 0.82786136 0.823756441 1 11.1723921 -9.110452989 1.980275844 0.998095629 0.752537849 0.109570033 0.217138095 1.229061369 10.15427802 0.218881319 0.061087589 7.75E-10 9.110452989 -0.245557779 ASNTST(ph)PTKGNTETSASASQTNHVK ddPTM_K562_Paclitaxel_30min_R1 1 ASNTSTPTKGNTETSASASQTNHVK 25 1 A0A2R8Y7W5;A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8Y7Y0;A0A2R8YCQ1;A0A2R8YD28 A0A2R8Y7W5 CDK13 Cyclin-dependent kinase 13 1 AS(0.062)NT(0.062)S(0.243)T(0.316)PT(0.316)KGNT(0.002)ETSASASQTNHVK 79.416 0.00026645 6487700 865.93 600.82 1820.8 925.44 620.14 562.18 570.9 697.25 595.21 1258.3 TRUE FALSE 878.0556916 666.4195594 1361.116521 866.0864205 704.6135671 661.8747296 679.2252947 638.0142604 652.38258 1001.857769 0.876427492 0.665183801 1.358592569 0.864480415 0.703306985 0.660647399 0.677965791 0.636831175 0.651172851 1 9.968461993 -6.651278479 4.525945505 0.698643053 0.961312706 0.250612443 0.188020134 0.277691845 9.735750082 0.056301463 0.073176587 2.23E-07 6.651278479 0.262669653 ASPDQNASTHT(ph)PQSSVK ddPTM_K562_Paclitaxel_30min_R1 2 ASPDQNASTHTPQSSVK 17 0 Q14677-2;Q14677;Q14677-3;H0YD52 Q14677-2 CLINT1 Clathrin interactor 1 1 ASPDQNASTHT(0.9)PQS(0.09)S(0.009)VK;ASPDQNASTHT(0.998)PQS(0.001)SVK 135.36 1.23E-07 85842000 11547.8 9178.9 17912.5 12324.8 9811.5 9376.8 8707.2 12448.9 6162.5 15712.9 TRUE FALSE 11709.50483 10181.08334 13390.26784 11534.34249 11147.99241 11039.64382 10359.34575 11391.28824 6754.43566 12510.60236 0.93596651 0.813796415 1.070313599 0.921965399 0.891083586 0.882423045 0.828045321 0.910530758 0.539896918 1 13.61086363 -7.685465677 1.249062765 0.797023034 0.931575149 0.144606792 0.123851114 0.838199978 2.650238557 0.073895377 0.045527493 2.06E-08 7.685465677 0.134552115 ASPEPQRENAS(ph)PAPGTTAEEAMSR ddPTM_K562_Paclitaxel_30min_R1 2 ASPEPQRENASPAPGTTAEEAMSR 24 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 ASPEPQRENAS(0.999)PAPGT(0.001)T(0.001)AEEAMSR;ASPEPQRENAS(0.868)PAPGT(0.094)T(0.036)AEEAMS(0.002)R 104.05 8.11E-06 872120000 2004.58 1911.7 2236.37 2246.3 2018.33 1732.8 1978.91 1924.48 1853.66 2380.77 TRUE FALSE 2032.650305 2120.425871 1671.770734 2102.232372 2293.260717 2040.08775 2354.397842 1760.983412 2031.712325 1895.567767 1.072317403 1.118623089 0.881936675 1.109025174 1.209801494 1.076241001 1.242054166 0.929000504 1.071822575 1 10.88841432 -8.296062721 24.99937392 1.000308685 1.097139484 0.188649713 0.095843705 1197.114372 864356.2827 0.053762473 0.025828137 5.06E-09 8.296062721 0.096830799 ASPEPQRENASPAPGT(ph)TAEEAMSR ddPTM_K562_Paclitaxel_30min_R1 2 ASPEPQRENASPAPGTTAEEAMSR 24 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 ASPEPQRENAS(0.001)PAPGT(0.498)T(0.498)AEEAMS(0.003)R;ASPEPQRENAS(0.017)PAPGT(0.466)T(0.466)AEEAMS(0.05)R 72.383 0.0013034 104847000 3568.04 3456.53 4442.43 3888.82 3531.07 3387.91 3370.79 4028.8 3765.71 4070.18 TRUE FALSE 3618.003568 3833.925635 3320.883603 3639.408491 4012.061516 3988.70827 4010.379806 3686.528293 4127.423271 3240.675082 1.116435149 1.18306388 1.024750559 1.123040231 1.238032636 1.230826346 1.237513698 1.13758035 1.273630699 1 11.66207866 -6.651807622 6.763883959 1.197687531 1.10906498 0.161822785 0.080904898 0.335005682 18.78042966 0.022694225 0.02932311 2.23E-07 6.651807622 -0.08862255 ASPGHSPHYFAAS(ph)SPTSPNALPPAR ddPTM_K562_Paclitaxel_30min_R1 1 ASPGHSPHYFAASSPTSPNALPPAR 25 0 Q8TEM1 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 1 ASPGHSPHYFAAS(0.923)S(0.066)PT(0.004)S(0.007)PNALPPAR 157.68 1.04E-25 4103100 1340.3 1200 1534 1404.5 1461 1282 1111.8 1341.2 1256.9 1523.1 TRUE FALSE 1359.068335 1331.020058 1146.722728 1314.421656 1660.012935 1509.3447 1322.758246 1227.256688 1377.630861 1212.691384 1.120704206 1.097575258 0.945601447 1.083888014 1.368866768 1.244623917 1.090762467 1.012010726 1.13601109 1 10.24399673 -7.993790669 24.9342036 1.054683848 1.142295697 0.132963645 0.108534395 380.2839822 1527064.126 0.051503367 0.034623319 1.01E-08 7.993790669 0.087611849 ASPGTPLS(ph)PGSLR ddPTM_K562_Paclitaxel_30min_R1 3 ASPGTPLSPGSLR 13 0 E1P5H9;Q96BD0-2;Q96BD0-3;Q96BD0-4;Q96BD0 E1P5H9 SLCO4A1 Solute carrier organic anion transporter family member 4A1 1 ASPGT(0.001)PLS(0.839)PGS(0.16)LR;ASPGT(0.264)PLS(0.736)PGSLR;ASPGT(0.048)PLS(0.952)PGSLR 167.22 0.00028071 109662000 3913.3 4420.5 6022.9 4859.3 3819 3746.11 3965.8 4238.5 4279.6 5122 TRUE FALSE 3968.098274 4903.145139 4502.344405 4547.646247 4339.212456 4410.430011 4718.289847 3878.412969 4690.674702 4078.133588 0.973018217 1.202301257 1.104020824 1.115129298 1.064019204 1.081482476 1.156972852 0.951026465 1.150201336 1 11.99369332 -9.829337641 0.367451561 0.985802293 1.104201971 0.098369115 0.074982739 8.050530155 1.701477563 0.274367677 0.059758129 1.48E-10 9.829337641 0.118399678 ASPPSFPS(ph)GSPVLR ddPTM_K562_Paclitaxel_30min_R1 1 ASPPSFPSGSPVLR 14 0 Q9C073;D6RFX7;D6RJ87;K7ENS5 Q9C073 FAM117A Protein FAM117A 1 ASPPS(0.001)FPS(0.838)GS(0.161)PVLR 144.88 1.16E-05 11551000 360.44 356.63 539.73 397.06 273.04 313.35 302.01 349.89 366.13 441.46 TRUE FALSE 365.4872721 395.5680694 403.4684862 371.5943488 310.2326706 368.9182228 359.3148209 320.1646606 401.2984224 351.4902097 1.039822055 1.125402809 1.147879728 1.057196868 0.882621086 1.049583211 1.022261249 0.91087789 1.141705832 1 8.457340695 -6.526462248 24.9959619 0.997440365 1.105816111 0.296414718 0.071651071 119.4335757 833076.4162 0.020296449 0.026327364 2.98E-07 6.526462248 0.108375746 ASPPSFPSGS(ph)PVLR ddPTM_K562_Paclitaxel_30min_R1 1 ASPPSFPSGSPVLR 14 0 Q9C073;D6RFX7;D6RJ87;K7ENS5 Q9C073 FAM117A Protein FAM117A 1 ASPPSFPS(0.027)GS(0.973)PVLR 122.12 0.00069812 11784000 204.2 320.14 425.79 407.62 358.38 200.11 341 272.11 406.46 511.42 TRUE FALSE 207.05943 355.0939678 318.2940484 381.4770776 407.1974234 235.5966988 405.7029699 248.992557 445.5022991 407.1923233 0.50850524 0.872054672 0.781679885 0.93684742 1.000012525 0.578588262 0.996342383 0.611486373 1.094083247 1 8.669566553 -5.260185385 23.85885615 0.859945045 0.508505035 0.308719657 0.163014916 68.75276418 1307810.098 0.037291445 0.224240383 5.49E-06 5.260185385 -0.35144001 ASPPSFPSGSPVLRLS(ph)PCLHR ddPTM_K562_Paclitaxel_30min_R1 1 ASPPSFPSGSPVLRLSPCLHR 21 1 Q9C073;D6RFX7;D6RJ87;K7ENS5 Q9C073 FAM117A Protein FAM117A 1 ASPPSFPS(0.065)GS(0.285)PVLRLS(0.65)PCLHR 62.005 0.012585 43414000 1929.2 2065.5 2649 2236 2286.1 2061.7 2323.3 3234.3 2007.8 3253.8 TRUE FALSE 1956.214752 2291.018275 1980.227188 2092.592968 2597.505524 2427.313547 2764.134047 2959.526027 2200.658161 2590.673774 0.755098836 0.884332986 0.764367636 0.807740824 1.002637055 0.936942957 1.06695566 1.142376959 0.849453985 1 11.33911164 -6.763249358 7.138896113 1.007489753 0.805417371 0.598325999 0.078858443 0.090763287 25.90160691 0.023822644 0.028776573 1.72E-07 6.763249358 -0.202072381 ASPS(ph)PQPSSQPLQIHR ddPTM_K562_Paclitaxel_30min_R1 3 ASPSPQPSSQPLQIHR 16 0 B5MBZ0;Q9HC35 B5MBZ0 EML4 Echinoderm microtubule-associated protein-like 4 1 AS(0.062)PS(0.938)PQPSSQPLQIHR;AS(0.001)PS(0.975)PQPS(0.012)S(0.012)QPLQIHR;AS(0.001)PS(0.855)PQPS(0.111)S(0.034)QPLQIHR 176.43 2.42E-09 363215000 3689.6 3702.4 5514.4 4180.4 3539 3249.92 3250.62 4275.6 3772.3 4162.8 TRUE FALSE 3741.265783 4106.640553 4122.221519 3912.287855 4021.071716 3826.247681 3867.408176 3912.361093 4134.64627 3314.419075 1.128784773 1.239022725 1.243723689 1.180384184 1.21320558 1.154424831 1.166843446 1.180406281 1.247472386 1 11.69454031 -11.29296444 3.534652039 0.999388346 1.195318071 0.70007992 0.038273176 11497836.77 14986690.95 72538.81973 0.009531958 5.09E-12 11.29296444 0.195929725 ASPSCS(ph)SPTRDSSGVPVSK ddPTM_K562_Paclitaxel_30min_R1 3 ASPSCSSPTRDSSGVPVSK 19 1 Q8N5I9;J3KN91;A0A087WT30 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 1 AS(0.001)PS(0.197)CS(0.674)S(0.122)PT(0.006)RDSSGVPVSK;AS(0.011)PS(0.431)CS(0.469)S(0.08)PT(0.005)RDS(0.003)S(0.002)GVPVSK;AS(0.003)PS(0.215)CS(0.641)S(0.139)PT(0.001)RDSSGVPVSK 92.633 0.0010078 645145000 7305.3 5872.6 11961.1 7756.8 6366.9 5949.6 5370 8181 7556 8748.2 TRUE FALSE 7407.596739 6513.790328 8941.372372 7259.313566 7234.179573 7004.678023 6388.929467 7485.972986 8281.787561 6965.312038 1.063498189 0.935175667 1.283700188 1.042209384 1.038600932 1.005651719 0.917249569 1.074750556 1.189004529 1 12.76597227 -6.49078092 24.95606881 1.034283282 1.09235058 0.059219501 0.10170447 2077.602608 1615336.905 0.029493445 0.043696914 3.23E-07 6.49078092 0.058067298 ASPSCSSPT(ph)RDSSGVPVSK ddPTM_K562_Paclitaxel_30min_R1 1 ASPSCSSPTRDSSGVPVSK 19 1 Q8N5I9;J3KN91;A0A087WT30 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 1 ASPS(0.234)CS(0.184)S(0.184)PT(0.39)RDS(0.006)S(0.002)GVPVSK 87.157 0.016411 521280000 2195.4 1704.8 3530 1737 1560.1 1572.9 1528.4 2227.7 2215.1 2630.6 TRUE FALSE 2226.142373 1890.935829 2638.807842 1625.596595 1772.612033 1851.83173 1818.405921 2038.44298 2427.870252 2094.482276 1.06286045 0.902817775 1.259885496 0.776132896 0.846324676 0.884147721 0.868188737 0.973244321 1.159174408 1 11.03237796 -11.54090153 15.68813921 1.000000002 0.962031502 0.00086531 0.142898393 1.20E-08 3.99E-10 0.139909802 0.033933109 2.88E-12 11.54090153 -0.037968501 ASPSENNAGGGS(ph)PSSGSGGNPTNTSGTTR ddPTM_K562_Paclitaxel_30min_R1 1 ASPSENNAGGGSPSSGSGGNPTNTSGTTR 29 0 E7EUC4;Q9NRH2 E7EUC4 SNRK SNF-related serine/threonine-protein kinase 1 ASPSENNAGGGS(0.995)PS(0.002)S(0.002)GS(0.001)GGNPTNTSGTTR 129.99 4.05E-16 2356000 744.08 610.62 930.56 684.98 698.45 637.81 647.6 828.75 560.05 748.97 TRUE FALSE 754.4994157 677.2895566 695.628619 641.0484487 793.5907149 750.9166482 770.4787193 758.3425146 613.8453049 596.3295029 1.26523912 1.135763958 1.166517195 1.074990329 1.330792307 1.259231087 1.292035218 1.27168371 1.029372691 1 9.219965904 -8.800125708 8.139857114 1.011838488 1.221563926 0.561266542 0.074181829 0.218179673 38.91218022 0.075261699 0.019979071 1.58E-09 8.800125708 0.209725439 ASPSENNAGGGSPS(ph)SGSGGNPTNTSGTTRR ddPTM_K562_Paclitaxel_30min_R1 2 ASPSENNAGGGSPSSGSGGNPTNTSGTTRR 30 1 E7EUC4;Q9NRH2 E7EUC4 SNRK SNF-related serine/threonine-protein kinase 1 ASPS(0.001)ENNAGGGS(0.132)PS(0.811)S(0.053)GS(0.003)GGNPTNTSGTTRR;ASPS(0.004)ENNAGGGS(0.114)PS(0.67)S(0.171)GS(0.037)GGNPT(0.003)NT(0.001)SGTTRR 82.541 9.52E-07 4885400 0 0 0 0 0 0 0 72.484 75.3 0 TRUE FALSE 0 0 0 0 0 0 0 66.32603177 82.53290145 0 0 ASPVTTS(ph)PTAATTQNPVLSK ddPTM_K562_Paclitaxel_30min_R1 1 ASPVTTSPTAATTQNPVLSK 20 0 Q96JN0-2;Q96JN0;Q96JN0-3 Q96JN0-2 LCOR Ligand-dependent corepressor 1 ASPVT(0.002)T(0.377)S(0.609)PT(0.01)AAT(0.001)TQNPVLSK 158.92 2.86E-12 8345400 1277.7 818.09 1401.3 947.14 660.51 607.83 752.94 1023.7 672.34 1043.2 TRUE FALSE 1295.591742 907.4118328 1047.524484 886.3946796 750.4826445 715.6201161 895.8064344 936.7302953 736.9212611 830.5952674 1.559835208 1.09248375 1.261173191 1.067180027 0.903547942 0.861574998 1.078511364 1.127781884 0.887220636 1 9.698001841 -2 0.676564308 0.988997867 59.2790626 0.709113701 0.106227181 147.1272837 0.856533669 0.044861489 12916.55864 0.01 2 58.29006474 ASQS(ph)PLRGASDVGAGEPGPER ddPTM_K562_Paclitaxel_30min_R1 1 ASQSPLRGASDVGAGEPGPER 21 1 A0A1B0GW05 A0A1B0GW05 1 AS(0.029)QS(0.954)PLRGAS(0.018)DVGAGEPGPER 153.94 3.62E-17 39579000 591.37 939.87 890.86 727.4 823.39 777.15 760.68 677.83 680.87 751.44 TRUE FALSE 599.6510045 1042.488185 665.951375 680.7478197 935.5496581 914.9666408 905.015059 620.2441106 746.2706057 598.2961155 1.002264579 1.74242847 1.113079891 1.137810863 1.563690009 1.529287283 1.512654078 1.036684168 1.24732651 1 9.224715886 -8.269555483 24.83785625 1.106503992 1.380382387 0.237612198 0.226640925 871.3581237 2666614.046 0.120038741 0.059248024 5.38E-09 8.269555483 0.273878395 ASQS(ph)PLRGASDVGAGEPGPERAPLSPGR ddPTM_K562_Paclitaxel_30min_R1 1 ASQSPLRGASDVGAGEPGPERAPLSPGR 28 2 A0A1B0GW05 A0A1B0GW05 1 AS(0.086)QS(0.835)PLRGAS(0.079)DVGAGEPGPERAPLSPGR 54.425 0.012033 0 453.31 353.02 680.25 580.88 407.31 346.35 491.52 487.73 654.12 382.35 TRUE FALSE 459.6577386 391.5639174 508.5124743 543.6249567 462.7925178 407.7703095 584.7833541 446.2942922 716.9511487 304.4268601 1.509911899 1.286233144 1.670392928 1.785732562 1.520209214 1.339468894 1.920932187 1.466014832 2.355085055 1 8.249951846 -7.759877261 24.99964639 1.724342559 1.527200648 0.047542835 0.347690697 122.5855896 1961877.441 0.130636962 0.095685583 1.74E-08 7.759877261 -0.197141911 ASQSPLRGAS(ph)DVGAGEPGPER ddPTM_K562_Paclitaxel_30min_R1 1 ASQSPLRGASDVGAGEPGPER 21 1 A0A1B0GW05 A0A1B0GW05 1 AS(0.001)QS(0.014)PLRGAS(0.985)DVGAGEPGPER 102.59 0.0010923 43996000 1276.3 1013 1308.9 1384.1 1061.5 977.42 975.52 1449.4 1235.2 1402.5 TRUE FALSE 1294.172138 1123.602766 978.4520067 1295.330021 1206.094271 1150.751713 1160.619827 1326.264423 1353.846479 1116.66973 1.158956944 1.006208672 0.876223274 1.159993851 1.080081459 1.030521095 1.039358188 1.187696225 1.212396506 1 10.12498684 -8.250412417 23.97211907 1.150034773 1.046425332 0.137320433 0.092412512 648.2450151 1409260.475 0.04413609 0.025137811 5.62E-09 8.250412417 -0.103609442 ASRVPS(ph)S(ph)DEEVVEEPQSR ddPTM_K562_Paclitaxel_30min_R1 1 ASRVPSSDEEVVEEPQSR 18 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 ASRVPS(0.992)S(0.945)DEEVVEEPQS(0.063)R 106.87 0.010928 35609000 2367.4 2370.2 3333.5 2559.6 2414.1 2635.2 2292.6 2289.9 3031.4 3054.9 TRUE FALSE 2400.550904 2628.986452 2491.916697 2395.438712 2742.941291 3102.51572 2727.608882 2095.358702 3322.579515 2432.309703 0.986942946 1.080860076 1.024506334 0.984841161 1.127710541 1.275543043 1.121406899 0.86146871 1.366018279 1 11.24811122 -6.775133199 24.36345574 1.125743086 1.024058433 0.135295585 0.131144701 374.3658487 666052.6976 0.040003712 0.045621404 1.68E-07 6.775133199 -0.101684653 ASS(ph)ADDIEAMR ddPTM_K562_Paclitaxel_30min_R1 1 ASSADDIEAMR 11 0 Q12809-7;Q12809-4;Q12809;Q86U57;Q12809-5 Q12809-7 KCNH2 Potassium voltage-gated channel subfamily H member 2 1 AS(0.04)S(0.96)ADDIEAMR 126.71 0.0015607 10082000 791.59 746.09 948.79 855.08 768.88 656.11 632.48 866.82 830.06 812.22 TRUE FALSE 802.6747023 827.5506293 709.25623 800.238996 873.6144732 772.4618963 752.4897782 793.1782305 909.7909718 646.6891182 1.241206446 1.279673039 1.096749907 1.237440021 1.350903315 1.194487234 1.163603588 1.226521691 1.406844411 1 9.336928524 -10.84276452 5.158796221 0.999999743 1.239460816 0.431685643 0.083887793 61575538.83 5.127944205 187.6939897 0.020524087 1.44E-11 10.84276452 0.239461073 ASS(ph)ASVPAVGASAEGTRR ddPTM_K562_Paclitaxel_30min_R1 1 ASSASVPAVGASAEGTRR 18 1 A0A2R8YFI4;V9GYZ0;Q9BZ23-3;Q9BZ23-4;Q9BZ23 A0A2R8YFI4 PANK2 "Pantothenate kinase 2, mitochondrial" 1 AS(0.291)S(0.705)AS(0.004)VPAVGASAEGTRR 94.911 0.0009604 28580000 779.63 560.1 628.82 798.74 592.57 387.21 558.98 736.4 655.61 661.65 TRUE FALSE 790.5472254 621.2536121 470.0666139 747.5123914 673.2880663 455.8762568 665.0435369 673.8382235 718.5842698 526.8053668 1.500643834 1.179284896 0.892296555 1.418953637 1.27805848 0.865359933 1.262408432 1.279102807 1.364041286 1 9.041126233 -5.262150444 8.766794962 1.175352124 1.502275145 0.227838304 0.181880729 0.127864063 181.282732 0.045524578 0.254736671 5.47E-06 5.262150444 0.326923021 ASS(ph)CETYEYPQR ddPTM_K562_Paclitaxel_30min_R1 1 ASSCETYEYPQR 12 0 Q9UQC2;Q9UQC2-2 Q9UQC2 GAB2 GRB2-associated-binding protein 2 1 AS(0.151)S(0.849)CETYEYPQR 127.52 0.0012435 68551000 1181.5 1180.2 1702.4 1348.7 1294.4 1192.6 1093.7 1429.7 1219.8 1501.1 TRUE FALSE 1198.044645 1309.058227 1272.608065 1262.200419 1470.719194 1404.090865 1301.223866 1308.238061 1336.96724 1195.174996 1.002401028 1.095285821 1.06478806 1.056080007 1.230547158 1.174799397 1.08873083 1.09459959 1.118637224 1 10.22300616 -4.705401066 0.894439799 1.116861875 0.809350041 0.192518562 0.060485911 8.462534051 2.649760163 0.021239234 3.214182708 1.97E-05 4.705401066 -0.307511834 ASS(ph)EDTLNKPGSTAASGVVR ddPTM_K562_Paclitaxel_30min_R1 1 ASSEDTLNKPGSTAASGVVR 20 1 Q5M775;Q5M775-2;J3KRD8;J3KRB9;J3KTI9;J3QRQ9;J3QS22 Q5M775 SPECC1 Cytospin-B 1 AS(0.221)S(0.767)EDT(0.012)LNKPGSTAASGVVR 57.188 0.027198 19437000 1509.5 1027.2 2220.8 1133.7 893.93 622.95 481.08 903.03 642.51 1097.5 TRUE FALSE 1530.637657 1139.35317 1660.131573 1060.989556 1015.6984 733.4214358 572.3624186 826.311965 704.2259563 873.8288976 1.751644586 1.303863002 1.899835973 1.214184561 1.162353869 0.839319274 0.655005139 0.945622155 0.805908294 1 9.771207006 -6.748770024 1.657163523 0.837804126 1.615837417 0.772990493 0.183034685 0.162188993 0.922584671 0.062796993 0.085194451 1.78E-07 6.748770024 0.77803329 ASS(ph)FADMMGILKDFHR ddPTM_K562_Paclitaxel_30min_R1 2 ASSFADMMGILKDFHR 16 1 Q9H019-3;Q9H019;E9PPF9;E9PLD2 Q9H019-3 MTFR1L Mitochondrial fission regulator 1-like 1 AS(0.176)S(0.824)FADMMGILKDFHR;AS(0.169)S(0.831)FADMMGILKDFHR 115.66 0.00038829 10316900 9400.3 7740 12279.3 7857.2 7105.7 6548.1 7035.1 9818.4 19609.9 12747 TRUE FALSE 9531.933202 8585.079375 9179.238847 7353.27436 8073.61664 7709.313595 8369.973499 8984.265635 21493.51851 10149.1544 0.939184963 0.845891099 0.904433855 0.724520888 0.795496484 0.759601568 0.824696636 0.885223072 2.117764462 1 13.30907191 -8.637554933 9.388573922 1.555641383 0.825917879 0.560333912 0.256914702 0.172722845 13.35384053 0.156314057 0.058750846 2.30E-09 8.637554933 -0.729723504 ASS(ph)FSGISILTR ddPTM_K562_Paclitaxel_30min_R1 2 ASSFSGISILTR 12 0 H0YIX9;H7C0E9;A0A0U1RRA6;B5MCU0;B5MCG9;Q9Y2K5-3;Q9Y2K5-2;Q9Y2K5 H0YIX9 R3HDM2 R3H domain-containing protein 2 1 AS(0.084)S(0.908)FS(0.007)GISILTR;AS(0.112)S(0.885)FS(0.003)GISILTR 140.14 0.00011463 16187900 2229.01 1891.7 2514.82 2363.04 2492.98 2105.08 2697.73 3044.5 2939.8 3606.3 TRUE FALSE 2260.223017 2098.242203 1879.922588 2211.485191 2832.566082 2478.386381 3209.610184 2785.850722 3222.180925 2871.33408 0.787168248 0.730755163 0.654720954 0.770194317 0.986498263 0.863148039 1.117811475 0.970228696 1.122189489 1 11.48750548 -6.922870359 1.302547124 1.036743874 0.716327959 0.756449808 0.076289305 0.203627764 0.722063907 0.031222672 0.037987214 1.19E-07 6.922870359 -0.320415915 ASS(ph)HS(ph)SQTQGGGSVTK ddPTM_K562_Paclitaxel_30min_R1 3 ASSHSSQTQGGGSVTK 16 0 P02545-6;P02545;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;Q3BDU5;P02545-2;Q5TCI8 P02545-6;Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C 2 AS(0.007)S(0.993)HS(0.887)S(0.085)QT(0.028)QGGGSVTK;AS(0.008)S(0.992)HS(0.8)S(0.2)QTQGGGSVTK;AS(0.071)S(0.923)HS(0.719)S(0.261)QT(0.026)QGGGSVTK 199.33 1.20E-14 52391000 18304.4 14355.7 26872.2 16890.3 13157.2 11844.9 12388.2 19094.6 16477.6 21430.7 TRUE FALSE 18560.71807 15923.10387 20087.98076 15807.03176 14949.43339 13945.4267 14738.79628 17472.39455 18060.3471 17063.11158 1.087768663 0.933188756 1.177275356 0.926386239 0.876125865 0.817285091 0.863781275 1.02398642 1.058443943 1 14.05859314 -6.34566698 24.9946452 0.928299842 1.052790592 0.28988771 0.090261601 112.588112 33408.74935 0.026889937 0.039884226 4.51E-07 6.34566698 0.124490751 ASS(ph)HSSQTQGGGSVTK ddPTM_K562_Paclitaxel_30min_R1 3 ASSHSSQTQGGGSVTK 16 0 P02545-6;P02545;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;Q3BDU5;P02545-2;Q5TCI8 P02545-6;Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C 1 AS(0.003)S(0.991)HS(0.004)S(0.002)QTQGGGSVTK;AS(0.138)S(0.757)HS(0.041)S(0.064)QTQGGGSVTK;AS(0.03)S(0.961)HS(0.006)S(0.002)QTQGGGSVTK 136.34 2.61E-14 1239230 1113.86 810.21 1630.92 821.78 712.66 787.24 816.22 1186.88 879.7 1133.11 TRUE FALSE 1129.457477 898.6714678 1219.174075 769.074709 809.7363574 926.8459606 971.093484 1086.047136 964.1991156 902.18156 1.251918158 0.996109328 1.351362219 0.852461126 0.897531487 1.027338622 1.076383654 1.203801079 1.068741768 1 9.817273988 -6.261454905 25 1.024326173 1.179427833 0.309295567 0.123098041 2.103045689 3388568.775 0.035983449 0.057523001 5.48E-07 6.261454905 0.15510166 ASS(ph)LDDLR ddPTM_K562_Paclitaxel_30min_R1 2 ASSLDDLR 8 0 Q96P11-2;Q96P11-5;Q96P11;Q96P11-4;Q96P11-3 Q96P11-2 NSUN5 Probable 28S rRNA (cytosine-C(5))-methyltransferase 1 AS(0.24)S(0.76)LDDLR;AS(0.011)S(0.989)LDDLR 131.62 0.00015879 34606000 8019.8 7754.4 10933.8 8692.6 8300.9 7924 7312.6 9270.5 7753.5 9069.3 TRUE FALSE 8132.101943 8601.051616 8173.426962 8135.095543 9431.623115 9329.210142 8700.127676 8482.91316 8498.258319 7220.971682 1.126178346 1.191121084 1.131901262 1.126592916 1.306143208 1.291960494 1.204841683 1.174760619 1.176885701 1 12.81797727 -9.526819056 1.504455242 1.000037752 1.197630788 0.485155918 0.059689894 2.976449378 7.485440912 0.063601068 0.018371209 2.97E-10 9.526819056 0.197593036 ASS(ph)LEDLVLK ddPTM_K562_Paclitaxel_30min_R1 4 ASSLEDLVLK 10 0 Q15477 Q15477 SKIV2L Helicase SKI2W 1 AS(0.264)S(0.736)LEDLVLK;AS(0.007)S(0.993)LEDLVLK;AS(0.004)S(0.996)LEDLVLK;AS(0.014)S(0.986)LEDLVLK 188.96 0.00084098 75571700 18160.1 14824.8 30701.9 20158 14420.2 13227.7 13217.5 21070.2 14187.4 24210.1 TRUE FALSE 18414.39743 16443.4218 22950.82563 18865.1561 16384.47538 15573.44687 15725.45163 19280.15499 15550.16316 19276.06833 0.95529841 0.853048532 1.190638321 0.978682778 0.849990522 0.807916148 0.81580182 1.000212007 0.80670824 1 14.2345232 -6.695489822 6.068323379 0.873423016 1.00011121 0.229390569 0.102398779 0.298260966 20.22792265 0.030797633 0.039613443 2.02E-07 6.695489822 0.126688195 ASS(ph)LGEIDESSELR ddPTM_K562_Paclitaxel_30min_R1 3 ASSLGEIDESSELR 14 0 Q16513-4;Q16513-3;Q16513-2;Q16513;Q16513-5 Q16513-4 PKN2 Serine/threonine-protein kinase N2 1 AS(0.002)S(0.998)LGEIDESSELR;AS(0.004)S(0.996)LGEIDESSELR;AS(0.002)S(0.998)LGEIDESSELR 256.13 8.22E-73 172257000 5353.86 4957.9 7003.3 6035.8 4681.5 4914.1 4709.63 5918.1 4309 6847.1 TRUE FALSE 5428.830558 5499.220289 5235.230299 5648.690803 5319.199558 5785.546638 5603.257707 5415.320465 4722.898703 5451.657262 0.995812887 1.008724508 0.960300703 1.036141953 0.975703223 1.061245482 1.027808139 0.993334725 0.866323482 1 12.41247915 -8.546596612 24.62699901 0.932050739 1.009302483 0.355132885 0.040509819 197.7264654 205300.7303 0.02572971 0.00972608 2.84E-09 8.546596612 0.077251744 ASS(ph)LNFLNK ddPTM_K562_Paclitaxel_30min_R1 2 ASSLNFLNK 9 0 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 AS(0.006)S(0.994)LNFLNK;AS(0.008)S(0.992)LNFLNK 142.89 0.00064031 405240000 16166.8 12771.7 25950 15961.6 12321.4 11015.8 10902.1 13693.3 13496.6 15864 TRUE FALSE 16393.18508 14166.1574 19398.60155 14937.89442 13999.78328 12969.29746 12970.71656 12529.96869 14793.00873 12630.90809 1.297862747 1.121547025 1.535804189 1.182646118 1.108375042 1.026790581 1.026902933 0.99200854 1.171175392 1 13.62467074 -6.673934949 3.006679266 1.047363435 1.304875117 0.548479693 0.106758726 0.193568149 3.520383705 0.032857983 0.043197906 2.12E-07 6.673934949 0.257511683 ASS(ph)LNVLNVGGK ddPTM_K562_Paclitaxel_30min_R1 2 ASSLNVLNVGGK 12 0 H0YJK1;H0YG16;Q07866-7;Q07866-6;Q07866-4;G3V5R9;Q07866-9 H0YJK1 KLC1 1 AS(0.131)S(0.869)LNVLNVGGK;AS(0.031)S(0.969)LNVLNVGGK 176.43 8.81E-05 495610000 10924.3 9019.8 18968.5 11733.9 8645.7 7174.9 7455.9 10030 10390.1 12277.5 TRUE FALSE 11077.2739 10004.61227 14179.66758 10981.34017 9823.390713 8447.267774 8870.618103 9177.888895 11388.11553 9775.338761 1.13318568 1.023454277 1.450555108 1.123371828 1.00491563 0.864140669 0.907448664 0.938881927 1.164984233 1 13.25493098 -6.714007216 3.743614162 0.965416581 1.19752943 0.393828397 0.124859802 0.228012492 6.586025436 0.039588855 0.050374597 1.93E-07 6.714007216 0.232112849 ASS(ph)LPGSLQR ddPTM_K562_Paclitaxel_30min_R1 5 ASSLPGSLQR 10 0 E3W994;J3KR49;O75122;E7ERI8;E7EW49;O75122-3;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2 E3W994 CLASP2 CLIP-associating protein 2 1 AS(0.02)S(0.98)LPGSLQR;AS(0.004)S(0.995)LPGS(0.001)LQR;ASS(1)LPGSLQR;AS(0.046)S(0.953)LPGS(0.001)LQR;AS(0.006)S(0.994)LPGSLQR 166.29 1.56E-37 233229000 7645.3 7741.31 11293.1 9799.6 8525.7 8418.2 7743 9632 9684.8 10708 TRUE FALSE 7752.357788 8586.532405 8442.017234 9171.097517 9687.044681 9911.049573 9212.193829 8813.701479 10615.06831 8525.703722 0.909292422 1.00713474 0.990184213 1.075699768 1.136216434 1.162490499 1.080520052 1.03377994 1.245066526 1 13.05760321 -6.103925067 1.454757275 1.113072464 0.943015283 0.476140548 0.067017845 0.385756634 1.537817505 0.020849579 0.059834314 7.87E-07 6.103925067 -0.170057181 ASS(ph)PAQCVTPVQTVV ddPTM_K562_Paclitaxel_30min_R1 1 ASSPAQCVTPVQTVV 15 0 Q13614;Q13614-2 Q13614 MTMR2 Myotubularin-related protein 2 1 AS(0.195)S(0.805)PAQCVTPVQTVV 127.07 0.00016429 19347000 1417.2 1215.3 1523.5 1163.2 1060.3 1115.8 895.73 1417.6 1200.3 1172.7 TRUE FALSE 1437.045172 1347.990564 1138.873583 1088.597558 1204.730811 1313.671463 1065.690091 1297.166032 1315.594178 933.7030963 1.539081511 1.443703645 1.219738466 1.16589263 1.290271839 1.406947742 1.141358635 1.389270355 1.409006978 1 9.866820057 -12.22115517 2.202697156 0.00015434 1.325676439 0.400908082 0.122084239 1429181.738 340969.9919 7096251.662 0.033967752 6.01E-13 12.22115517 1.325522099 ASS(ph)PCPEFEQFQIVPAVETPYLAR ddPTM_K562_Paclitaxel_30min_R1 2 ASSPCPEFEQFQIVPAVETPYLAR 24 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;A0A0U1RQL3 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 AS(0.08)S(0.92)PCPEFEQFQIVPAVETPYLAR;AS(0.188)S(0.812)PCPEFEQFQIVPAVETPYLAR 108.23 2.21E-06 30912000 2064 1568.45 2111.83 1974.73 1764.76 1688.49 1657.92 2139.28 2229.73 2312.4 TRUE FALSE 2092.902368 1739.698675 1578.672398 1848.079656 2005.15019 1987.919994 1972.501665 1957.534811 2443.905529 1841.131611 1.136747833 0.944907287 0.857446794 1.003773791 1.089085744 1.079727263 1.071352886 1.063223726 1.327393172 1 10.84637704 -6.735885834 3.533355442 1.107170482 0.970066223 0.246396334 0.102616257 0.319602457 8.371278008 0.032225045 0.04052141 1.84E-07 6.735885834 -0.137104258 ASS(ph)PPPQPQPPPPPAR ddPTM_K562_Paclitaxel_30min_R1 1 ASSPPPQPQPPPPPAR 16 0 Q9H7P9-3;Q9H7P9;H7BXC7 Q9H7P9-3 PLEKHG2 Pleckstrin homology domain-containing family G member 2 1 AS(0.007)S(0.993)PPPQPQPPPPPAR 106.55 0.0014624 4171100 1244.3 1176.4 1428.3 1265.1 1082.7 1005 972.18 1419.7 1046.1 1443.2 TRUE FALSE 1261.724039 1304.84333 1067.708 1183.962148 1230.18207 1183.222639 1156.64608 1299.087624 1146.582579 1149.075048 1.098034494 1.135559712 0.929189092 1.030361029 1.070584617 1.02971746 1.006588806 1.130550721 0.997830891 1 10.16625731 -5.696234086 24.99999926 1.030435589 1.116797851 0.347229399 0.05014842 68.6325527 26312.36884 0.012626871 0.03340755 2.01E-06 5.696234086 0.086362262 ASS(ph)PSASSSSSFR ddPTM_K562_Paclitaxel_30min_R1 1 ASSPSASSSSSFR 13 0 Q8IXZ2;A0A0J9YYE2 Q8IXZ2 ZC3H3 Zinc finger CCCH domain-containing protein 3 1 AS(0.4)S(0.551)PS(0.007)AS(0.002)S(0.005)S(0.02)S(0.007)S(0.007)FR 84.169 0.025513 12793000 2051.8 1875.7 2439 2441.1 1614.9 1465.6 1481.3 2254.8 1870.3 2109.2 TRUE FALSE 2080.53153 2080.495269 1823.244285 2284.538772 1834.87672 1725.503582 1762.368942 2063.240666 2049.950672 1679.343882 1.238895471 1.238873879 1.085688467 1.360375797 1.092615241 1.027486747 1.049438987 1.228599269 1.220685467 1 10.71368197 ASSAS(ph)VPAVGASAEGTRR ddPTM_K562_Paclitaxel_30min_R1 1 ASSASVPAVGASAEGTRR 18 1 A0A2R8YFI4;V9GYZ0;Q9BZ23-3;Q9BZ23-4;Q9BZ23 A0A2R8YFI4 PANK2 "Pantothenate kinase 2, mitochondrial" 1 AS(0.006)S(0.143)AS(0.849)VPAVGAS(0.001)AEGTRR 97.2 0.002375 7630400 2892 2575 3150.7 2684 2263.7 2311.8 2339.9 2819.5 2607.3 3632.6 TRUE FALSE 2932.496923 2856.147208 2355.266818 2511.860253 2572.054265 2721.765271 2783.88381 2579.965876 2857.742815 2892.274126 1.013906979 0.987509165 0.814330425 0.868472401 0.889284401 0.941046786 0.96252419 0.892019831 0.988060844 1 11.49798858 -7.445319738 6.10634081 0.951711339 0.910747953 0.10876523 0.05951071 0.648038399 40.56866203 0.022979831 0.020061635 3.59E-08 7.445319738 -0.040963386 ASSGDIS(ph)PYDNNS(ph)PVLSER ddPTM_K562_Paclitaxel_30min_R1 1 ASSGDISPYDNNSPVLSER 19 0 O43182-4;O43182;H7BYE6;B4DN07;O43182-5;O43182-2 O43182-4 ARHGAP6 Rho GTPase-activating protein 6 2 ASS(0.003)GDIS(0.996)PY(0.001)DNNS(1)PVLSER 197.41 5.70E-18 28235000 1056.6 885.59 1359.2 1196.8 1113.4 1104.5 1189.1 1392.6 963.38 1469.7 TRUE FALSE 1071.39566 982.2817111 1016.05315 1120.042605 1265.06393 1300.367567 1414.725517 1274.289938 1055.916953 1170.174333 0.915586361 0.83943194 0.868292117 0.957158752 1.081090137 1.11125969 1.208986967 1.088974439 0.902358669 1 10.19250776 -6.575995818 2.764718543 1.080043723 0.87201059 0.553702421 0.076782204 0.197369106 3.05907567 0.025117634 0.035417668 2.65E-07 6.575995818 -0.208033133 ASSGDIS(ph)PYDNNSPVLSER ddPTM_K562_Paclitaxel_30min_R1 2 ASSGDISPYDNNSPVLSER 19 0 O43182-4;O43182;H7BYE6;B4DN07;O43182-5;O43182-2 O43182-4 ARHGAP6 Rho GTPase-activating protein 6 1 ASS(0.002)GDIS(0.991)PY(0.003)DNNS(0.003)PVLSER;ASSGDIS(0.991)PY(0.008)DNNS(0.001)PVLSER 142.4 1.02E-12 63433000 2312.06 2461.21 3319.56 2832.9 2237.06 2405.2 2262.64 3087.27 1901.16 3755.07 TRUE FALSE 2344.435973 2729.933231 2481.496022 2651.210474 2541.785446 2831.728449 2691.964128 2824.987143 2083.774913 2989.784673 0.78414877 0.913086904 0.829991552 0.886756327 0.850156692 0.94713458 0.900387293 0.9448798 0.696964879 1 11.54582587 -5.250029473 23.5349472 0.883355634 0.784148635 0.130444938 0.078317231 1573.753889 3246005.14 0.018208923 0.263179609 5.62E-06 5.250029473 -0.099207 ASSGDQGS(ph)PPCFLR ddPTM_K562_Paclitaxel_30min_R1 1 ASSGDQGSPPCFLR 14 0 A6NN50;O75147-2;O75147-1;O75147-4;O75147 A6NN50 OBSL1 Obscurin-like protein 1 1 ASS(0.001)GDQGS(0.999)PPCFLR 120.21 0.0011518 24636000 1354.6 1340.9 1433.4 1346.7 1425.5 1318.2 1179 1445.5 1207.9 1646.1 TRUE FALSE 1373.568579 1487.303997 1071.520442 1260.32869 1619.677234 1551.964262 1402.709095 1322.695752 1323.924192 1310.623916 1.048026487 1.134806086 0.817565152 0.961624974 1.235806255 1.18414157 1.070260566 1.009210755 1.010148049 1 10.35603805 -4.911340266 13.15222128 1.050944106 1.006222855 0 0.113033834 12498136.23 39046925.75 0.030569438 15512032.02 1.23E-05 4.911340266 -0.044721252 ASSHS(ph)SQTQGGGSVTK ddPTM_K562_Paclitaxel_30min_R1 2 ASSHSSQTQGGGSVTK 16 0 P02545-6;P02545;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;Q3BDU5;P02545-2;Q5TCI8 P02545-6;Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C 1 AS(0.012)S(0.184)HS(0.402)S(0.402)QT(0.001)QGGGSVTK;AS(0.01)S(0.053)HS(0.464)S(0.464)QT(0.008)QGGGSVTK 86.258 0.010721 215091600 3540.92 3196.56 5624.31 3642.45 2803.43 2521.58 2621.1 3886.57 3581.12 4438.54 TRUE FALSE 3590.503805 3545.571231 4204.38338 3408.83956 3185.304628 2968.746808 3118.440042 3556.381619 3925.102577 3533.963112 1.015999231 1.003284731 1.189707772 0.964593985 0.901340656 0.840061629 0.882420089 1.00634373 1.110680121 1 11.78707127 -6.49272905 24.53310501 0.946240839 1.065380173 0.260156074 0.085239366 754.4657901 613916.0502 0.025826688 0.038240472 3.22E-07 6.49272905 0.119139334 ASSHSSQTQGGGS(ph)VTK ddPTM_K562_Paclitaxel_30min_R1 4 ASSHSSQTQGGGSVTK 16 0 P02545-6;P02545;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;Q3BDU5;P02545-2;Q5TCI8 P02545-6;Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C 1 ASSHSSQTQGGGS(0.99)VT(0.01)K;ASSHSSQTQGGGS(0.914)VT(0.086)K;ASSHSSQTQGGGS(0.799)VT(0.201)K;ASSHSSQT(0.026)QGGGS(0.883)VT(0.092)K 195.25 5.71E-12 75674000 17410.6 14361.6 25243 18095.2 13337.2 11925.8 13477.3 18840.1 15714.3 21560.9 TRUE FALSE 17654.40212 15929.64806 18870.09245 16934.65486 15153.95244 14040.67318 16034.54732 17239.51591 17223.72873 17166.77674 1.028405179 0.927934713 1.099221638 0.986478424 0.882748851 0.817898048 0.934045311 1.004237206 1.00331757 1 14.06733156 -6.534302652 23.00668022 0.934188537 1.015026609 0.214641615 0.067111188 132.486749 266812.564 0.021315985 0.027552616 2.92E-07 6.534302652 0.080838073 ASSLSESS(ph)PPK ddPTM_K562_Paclitaxel_30min_R1 1 ASSLSESSPPK 11 0 Q9UHB6;Q9UHB6-4;F8VRN8;F8VS07;F8VQE1;Q9UHB6-3;Q9UHB6-2;Q9UHB6-5 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 ASSLS(0.001)ES(0.085)S(0.914)PPK 144.7 0.00038628 18289000 4666.2 3956.7 8426.5 5496.8 4733 3863.8 3448.9 5395 4554.6 6262.7 TRUE FALSE 4731.541196 4388.705887 6299.125857 5144.259851 5377.71473 4548.99068 4103.310771 4936.661075 4992.08968 4986.358302 0.948897153 0.880142505 1.263271806 1.031666707 1.07848542 0.912287165 0.822907325 0.990033362 1.001149412 1 12.28377084 -7.264851693 24.68843055 0.937004528 1.043470656 0.168653575 0.104796146 459.7886828 3326603.399 0.037999589 0.034875291 5.43E-08 7.264851693 0.106466127 ASSPAES(ph)SPEDSGYMR ddPTM_K562_Paclitaxel_30min_R1 1 ASSPAESSPEDSGYMR 16 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 ASSPAES(0.606)S(0.394)PEDSGYMR 182.57 4.33E-10 12639000 2189.2 1871.7 2538.9 1929.7 1598.2 1827.1 1802.2 2015.4 2120.1 2383.7 TRUE FALSE 2219.855554 2076.058536 1897.923294 1805.937679 1815.901898 2151.110531 2144.158042 1844.17919 2323.745078 1897.900632 1.169637397 1.093871039 1.000011941 0.951544907 0.956795033 1.133415783 1.129752531 0.971694281 1.224376577 1 10.89018874 -7.282887087 24.75887632 1.092447765 1.031167143 0.093503457 0.089191133 1879.113647 2169209.586 0.032283372 0.028493628 5.21E-08 7.282887087 -0.061280623 ASSPAESS(ph)PEDSGYMR ddPTM_K562_Paclitaxel_30min_R1 1 ASSPAESSPEDSGYMR 16 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 ASSPAES(0.316)S(0.684)PEDSGYMR 153.2 2.08E-07 13334000 2841.9 2613.2 3687 2760.9 2714 3015.8 2880.6 3487.3 2840.3 3275.8 TRUE FALSE 2881.695368 2898.518013 2756.17125 2583.828231 3083.692748 3550.609786 3427.178812 3191.032098 3113.123506 2608.190162 1.104863982 1.111313912 1.056737078 0.99065945 1.182311318 1.361330871 1.314006495 1.223466043 1.193595295 1 11.34883334 -6.957983267 7.165955918 1.242094719 1.06979657 0.355752962 0.094928553 0.199244738 26.79687451 0.029202008 0.0330014 1.10E-07 6.957983267 -0.172298149 ASSPS(ph)PLTIGTPESQR ddPTM_K562_Paclitaxel_30min_R1 2 ASSPSPLTIGTPESQR 16 0 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 ASS(0.029)PS(0.968)PLT(0.003)IGTPESQR;ASS(0.025)PS(0.974)PLTIGTPESQR 240.5 8.49E-51 106147000 2024.07 1884.26 2749.8 2333.6 1951.7 1745.62 1949.32 2278.4 1590.14 2355.6 TRUE FALSE 2052.413225 2089.989879 2055.578981 2183.933341 2217.554583 2055.181197 2319.193294 2084.835699 1742.880052 1875.527427 1.094312563 1.114347809 1.096000491 1.164436899 1.182363185 1.095788399 1.236555254 1.111599686 0.929274628 1 10.87308065 -8.684949534 5.635181838 0.965746062 1.140660879 0.693434909 0.046017665 0.103168313 5.449230582 0.033209086 0.011760188 2.07E-09 8.684949534 0.174914818 ASSS(ph)GPRSPLDQRS(ph)PYGSR ddPTM_K562_Paclitaxel_30min_R1 1 ASSSGPRSPLDQRSPYGSR 19 2 O14646 O14646 CHD1 Chromodomain-helicase-DNA-binding protein 1 2 AS(0.01)S(0.159)S(0.785)GPRS(0.045)PLDQRS(0.493)PY(0.019)GS(0.488)R 73.435 0.026668 37607000 1954.7 1872.5 2574.5 1969.3 1536.1 1857.3 1905.7 2066.7 1708.5 2119 TRUE FALSE 1982.071831 2076.945882 1924.535634 1842.997912 1745.342826 2186.666077 2267.296627 1891.120935 1872.609059 1687.146637 1.17480709 1.231040525 1.140704425 1.092375655 1.034493854 1.296073518 1.343864592 1.120898974 1.109926676 1 10.72036965 -8.987191183 2.138937065 1.003522572 1.182497697 0.29341599 0.087198365 0.438317645 4.604118571 0.091672304 0.025491881 1.03E-09 8.987191183 0.178975124 ASSSGPRS(ph)PLDQR ddPTM_K562_Paclitaxel_30min_R1 3 ASSSGPRSPLDQR 13 1 O14646;O14646-2 O14646;O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 ASSS(0.009)GPRS(0.991)PLDQR;AS(0.002)S(0.026)S(0.017)GPRS(0.955)PLDQR;ASSSGPRS(1)PLDQR 142.95 0.00014197 115679000 6590 5927.6 8014.1 6955.8 5559.5 5733.4 5241.3 6957.8 6306.2 6968.1 TRUE FALSE 6682.280332 6574.795414 5990.841338 6509.686121 6316.798023 6750.137989 6235.809314 6366.691461 6911.938687 5547.997395 1.204449075 1.185075433 1.079820503 1.173339794 1.138572637 1.216680093 1.123974809 1.14756569 1.245843895 1 12.43775139 -12.00950015 2.630558947 0.825209982 1.165029257 0.545488221 0.046015845 13660917.59 4799099.917 14446303.6 0.011512368 9.78E-13 12.00950015 0.339819275 ASSSSSSSS(ph)SPPASLDHEAPSLQEAALAAACSNR ddPTM_K562_Paclitaxel_30min_R1 2 ASSSSSSSSSPPASLDHEAPSLQEAALAAACSNR 34 0 Q8IXZ2;Q8IXZ2-2 Q8IXZ2 ZC3H3 Zinc finger CCCH domain-containing protein 3 1 AS(0.001)S(0.002)S(0.004)S(0.003)S(0.007)S(0.045)S(0.11)S(0.276)S(0.276)PPAS(0.276)LDHEAPS(0.001)LQEAALAAACSNR;ASSS(0.001)S(0.002)S(0.006)S(0.05)S(0.134)S(0.419)S(0.364)PPAS(0.022)LDHEAPSLQEAALAAACSNR 76.826 8.10E-06 45792000 690.8 805.58 819.82 711.76 1083.3 685.8 685.08 962.74 770.5 877.76 TRUE FALSE 700.4733313 893.5359487 612.8463016 666.1108993 1230.8638 807.4170009 815.0703536 880.9492278 844.5099677 698.8720302 1.002291265 1.278540148 0.876907753 0.953122847 1.761214854 1.155314515 1.166265523 1.260530097 1.208389993 1 9.448884499 ASSTS(ph)LTSTQPTK ddPTM_K562_Paclitaxel_30min_R1 1 ASSTSLTSTQPTK 13 0 A0A494C1F2;P35658-2;P35658-4;P35658;P35658-3;P35658-5;A0A0A0MSW3;E9PKD2;B7ZAV2;H0Y837 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 ASST(0.013)S(0.986)LTSTQPTK 132.24 2.36E-15 0 1620.7 1496.9 2182.1 1485.2 1312.6 1212.3 1151 1547.2 1313.8 1611.5 TRUE FALSE 1643.3948 1660.336604 1631.201867 1389.94592 1491.398343 1427.284383 1369.396241 1415.755703 1439.99636 1283.075415 1.280824791 1.29402885 1.271321894 1.083292457 1.162362184 1.112393213 1.067276502 1.103408019 1.12230064 1 10.32539025 -2 0.213919484 1.020005289 2.615925166 0.783284568 0.044378157 23.13093195 0.290846392 0.074768146 12.63712586 0.01 2 1.595919876 ASSVSTKES(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 1 ASSVSTKESPAR 12 1 E7ETY2;Q13428-6;Q13428-7;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4 E7ETY2;Q13428 TCOF1 Treacle protein 1 ASSVST(0.003)KES(0.997)PAR 168.67 0.001401 38358000 1975.7 1786.9 2635.2 2246.4 1320.9 1202 1176.2 1667.5 1815.3 2361.1 TRUE FALSE 2003.365896 1981.999785 1969.911168 2102.325959 1500.828943 1415.157823 1399.37781 1525.835467 1989.667676 1879.906524 1.065673144 1.054307626 1.047877191 1.118314093 0.798352963 0.752780952 0.744386911 0.811654967 1.058386495 1 10.87644521 -6.762622072 24.99999822 0.840275468 1.068621517 0.520663658 0.09778762 24.21624484 511893.3956 0.030413702 0.036447376 1.73E-07 6.762622072 0.228346049 AST(ph)MDVT(ph)VVLPS(ph)GLEK ddPTM_K562_Paclitaxel_30min_R1 1 ASTMDVTVVLPSGLEK 16 0 C9J9X1;A0A0J9YWK3;A0A3B3IU00;O75128-5;O75128-4;O75128-3;O75128;O75128-7;O75128-2 C9J9X1 COBL Protein cordon-bleu 3 AS(0.154)T(0.846)MDVT(1)VVLPS(1)GLEK 49.463 0.030381 0 1561.1 1437.4 2405 1669.6 1355.7 1462.8 1266 2102.1 1661 2011.1 TRUE FALSE 1582.960216 1594.340193 1797.828005 1562.519329 1540.369292 1722.207041 1506.216891 1923.513484 1820.546472 1601.236716 0.98858601 0.995693002 1.122774657 0.975820323 0.961987242 1.075548059 0.940658477 1.201267411 1.136962732 1 10.64497089 -8.260538728 24.99993098 1.126836302 1.012116408 0.315820422 0.06910774 85.77993568 2381136.015 0.033446443 0.017898688 5.49E-09 8.260538728 -0.114719893 AST(ph)PQPAPAGVPALASQHPPEEEVHYHLPVAR ddPTM_K562_Paclitaxel_30min_R1 1 ASTPQPAPAGVPALASQHPPEEEVHYHLPVAR 32 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 AS(0.286)T(0.714)PQPAPAGVPALASQHPPEEEVHYHLPVAR 61.953 0.00027982 84859000 436.28 607.03 556.17 475.76 398.35 384.26 379.8 462.53 502.16 432.16 TRUE FALSE 442.389266 673.3075882 415.7580049 445.246883 452.6120141 452.4031157 451.8650673 423.2351895 550.3947117 344.0855548 1.285695548 1.956802833 1.208298341 1.294000509 1.31540545 1.314798338 1.313234633 1.230028938 1.599586801 1 8.426623517 -11.46278481 0.047029226 1.30E-15 2.238365627 0.19752872 0.219153146 441.5957223 3.405383495 110.2679194 57.48348062 3.45E-12 11.46278481 2.238365627 ASTAPGAEAS(ph)PSPCITER ddPTM_K562_Paclitaxel_30min_R1 4 ASTAPGAEASPSPCITER 18 0 Q66PJ3 Q66PJ3 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 1 ASTAPGAEAS(0.986)PS(0.014)PCITER;ASTAPGAEAS(0.959)PS(0.041)PCITER;ASTAPGAEAS(0.979)PS(0.021)PCITER;ASTAPGAEAS(0.944)PS(0.056)PCITER 260.96 3.40E-96 89356000 5004.31 4207.14 5799.4 5207.87 4229.16 4755.78 3801.35 4559.41 5027.5 5513.35 TRUE FALSE 5074.38578 4666.489773 4335.269744 4873.860528 4805.243192 5599.150809 4522.636318 4172.059662 5510.413838 4389.726244 1.155968618 1.063048016 0.987594557 1.110288036 1.094656688 1.275512526 1.030277531 0.950414543 1.255297832 1 12.09991526 -4.043164318 3.246937224 1.086574196 91.26260898 0.040515769 0.102188501 12625.42907 103.6298109 0.026145101 8484954.603 9.05E-05 4.043164318 90.17603478 ASTDVAGQAVTINLVPT(ph)EEQAK ddPTM_K562_Paclitaxel_30min_R1 1 ASTDVAGQAVTINLVPTEEQAK 22 0 Q9H792;H0YN99;H3BUZ5 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 ASTDVAGQAVTINLVPT(1)EEQAK 45.205 0.02947 219290000 1104.6 1272 1313.7 1608.1 1277.3 1388.9 1523.9 1312.2 1544.3 1825.8 TRUE FALSE 1120.067808 1410.881262 982.0401874 1504.963664 1451.289885 1635.201914 1813.05207 1200.72042 1692.636915 1453.700958 0.77049396 0.970544357 0.675544844 1.035263584 0.998341424 1.124854397 1.24719741 0.825974842 1.164363899 1 10.50551481 -6.38595806 7.011607845 1.059717932 0.82277062 0.453800146 0.125973552 0.235254536 12.40474028 0.03466107 0.051547428 4.11E-07 6.38595806 -0.236947312 ASTIFLS(ph)KSQTDVR ddPTM_K562_Paclitaxel_30min_R1 1 ASTIFLSKSQTDVR 14 1 Q8N7R7-3;Q8N7R7-2;Q8N7R7;R4GN48;H7BZD2;A0A494C0K2;Q8ND76-3;Q8ND76;R4GNF3 Q8N7R7-3;Q8ND76-3 CCNYL1;CCNY Cyclin-Y-like protein 1;Cyclin-Y 1 ASTIFLS(0.907)KS(0.093)QTDVR 169.94 3.37E-53 0 587.58 689.82 1276.1 888.36 551.15 480.91 563.55 677.15 829.85 886.07 TRUE FALSE 595.8079328 765.1368804 953.9327724 831.3845658 626.225961 566.1926362 670.4806706 619.6218809 909.5608004 705.4884476 0.844532515 1.084549128 1.35215931 1.178452416 0.887648782 0.802554086 0.950377958 0.878287778 1.289263918 1 9.462478649 -5.252962321 22.94083425 1.041230015 0.844532187 0.110061675 0.172035451 909.8841312 2462166.762 0.046860404 0.493279489 5.59E-06 5.252962321 -0.196697828 ASTY(ph)GS(ph)T(ph)QQLAEMWLEK ddPTM_K562_Paclitaxel_30min_R1 1 ASTYGSTQQLAEMWLEK 17 0 Q86X52 Q86X52 CHSY1 Chondroitin sulfate synthase 1 3 AS(0.315)T(0.368)Y(0.41)GS(0.955)T(0.952)QQLAEMWLEK 62.468 0.027285 159000000 1462.6 1087.9 1501.7 1521.9 1275.9 1377.4 847.75 940.7 1313.3 734.83 TRUE FALSE 1483.080913 1206.680601 1122.577262 1424.292146 1449.699181 1621.66255 1008.606137 860.7816633 1439.448333 585.0712426 2.534872344 2.062450712 1.918701827 2.434390963 2.477816504 2.771735187 1.723903114 1.471242475 2.460295821 1 9.192468498 -10.08953282 0.401519678 0.788186973 2.320011753 0.485174869 0.37992244 4.573258121 0.932557009 1.973592667 0.279773902 8.14E-11 10.08953282 1.53182478 ASVPAAPNPAATSATSVHVRS(ph)PARPSESR ddPTM_K562_Paclitaxel_30min_R1 1 ASVPAAPNPAATSATSVHVRSPARPSESR 29 2 Q8IY33-4;Q8IY33-2;Q8IY33;Q8IY33-5 Q8IY33-4 MICALL2 MICAL-like protein 2 1 ASVPAAPNPAAT(0.013)S(0.025)AT(0.09)S(0.09)VHVRS(0.433)PARPS(0.268)ES(0.082)R 55.051 0.002135 38893000 1923.9 1473.5 2159.4 1829.8 1728.7 1667 1545.1 1655 1704 1933.1 TRUE FALSE 1950.840536 1634.381713 1614.232763 1712.444818 1964.178207 1962.619044 1838.274659 1514.39742 1867.676814 1539.133159 1.26749302 1.061884544 1.048793442 1.112603421 1.276158723 1.27514571 1.194357128 0.983928786 1.213460189 1 10.58790234 -11.81014561 5.992048391 0.988742991 1.154539607 0.187982849 0.098887053 0.016461034 0.000521557 0.105984551 0.024534979 1.55E-12 11.81014561 0.165796616 ASVS(ph)PMDEPVPDSESPIEK ddPTM_K562_Paclitaxel_30min_R1 3 ASVSPMDEPVPDSESPIEK 19 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 AS(0.021)VS(0.979)PMDEPVPDSESPIEK;AS(0.011)VS(0.989)PMDEPVPDSESPIEK;AS(0.168)VS(0.832)PMDEPVPDSESPIEK 188.16 2.42E-16 61699600 8865.4 7330.7 16840.8 10286.2 7962 7068.5 7035.1 11577.9 6940.4 13691.4 TRUE FALSE 8989.542952 8131.090617 12589.13176 9626.489171 9046.559198 8321.999228 8369.973499 10594.28513 7607.056431 10901.08516 0.824646612 0.745897357 1.154851243 0.883076228 0.82987694 0.763410165 0.767811037 0.97185601 0.697825612 1 13.41218414 -6.668061377 5.217514519 0.829964799 0.911266585 0.053019616 0.1300987 0.601439842 26.44448178 0.038946811 0.050332142 2.15E-07 6.668061377 0.081301785 ASVSQT(ph)SPQSAS(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 1 ASVSQTSPQSASSPR 15 0 Q8TDY2-2;Q8TDY2 Q8TDY2-2 RB1CC1 RB1-inducible coiled-coil protein 1 2 ASVS(0.008)QT(0.577)S(0.415)PQS(0.242)AS(0.749)S(0.008)PR 111.11 0.0039962 3647600 1197.1 1215.7 1583.2 1199.5 1585.8 1010.1 1371.5 1373.1 1339.5 1848.8 TRUE FALSE 1213.863093 1348.434237 1183.501579 1122.569439 1801.812808 1189.227052 1631.734965 1256.446584 1468.16496 1472.013545 0.824627666 0.916047438 0.804001827 0.76260809 1.22404635 0.807891379 1.108505401 0.853556401 0.997385496 1 10.52357523 ASVSQTS(ph)PQSASSPR ddPTM_K562_Paclitaxel_30min_R1 1 ASVSQTSPQSASSPR 15 0 Q8TDY2-2;Q8TDY2 Q8TDY2-2 RB1CC1 RB1-inducible coiled-coil protein 1 1 ASVS(0.081)QT(0.188)S(0.718)PQS(0.013)ASSPR 213.02 1.15E-18 29939000 2258.7 1712.5 2444.2 2154.9 2043.9 1748.3 1932.8 2438 1699.8 2332.6 TRUE FALSE 2290.328769 1899.476541 1827.131481 2016.694359 2322.313784 2058.336458 2299.53871 2230.876682 1863.073385 1857.21484 1.233206154 1.022755419 0.983801896 1.085870259 1.250428186 1.108292058 1.238165161 1.201194733 1.003154479 1 10.858925 -3.729430096 9.821891469 1.118641853 1.231187718 0 0.103712948 0 0 0.024199921 0 0.000186453 3.729430096 0.112545865 ASVSQTSPQSASS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 ASVSQTSPQSASSPR 15 0 Q8TDY2-2;Q8TDY2 Q8TDY2-2 RB1CC1 RB1-inducible coiled-coil protein 1 1 ASVS(0.001)QT(0.003)S(0.003)PQS(0.039)AS(0.039)S(0.916)PR;ASVSQT(0.017)S(0.251)PQS(0.179)AS(0.047)S(0.505)PR 233.48 1.50E-35 31558700 4212.6 3843.5 5433.8 4933.6 3641.5 3510.8 3498 4414.3 3898.7 4091.2 TRUE FALSE 4271.589397 4263.146328 4061.969986 4617.180978 4137.533951 4133.391086 4161.727239 4039.277662 4273.187555 3257.411194 1.311344851 1.308752894 1.246993316 1.417438789 1.270190868 1.26891904 1.27761802 1.240026948 1.311835473 1 11.66951013 -13.7356069 0.292376107 1.99E-14 1.312790846 0.782881929 0.046797429 48.82403997 0.914314642 29.43026177 0.049432654 1.84E-14 13.7356069 1.312790846 ASYHFSPEELDENT(ph)SPLLGDAR ddPTM_K562_Paclitaxel_30min_R1 1 ASYHFSPEELDENTSPLLGDAR 22 0 O75410-9;O75410;O75410-2;E5RJU4;E5RFM9;H0YAY0;R4GMT7;E7EVI4;E7ET87;O75410-3;O75410-7 O75410-9 TACC1 Transforming acidic coiled-coil-containing protein 1 1 ASYHFSPEELDENT(0.565)S(0.435)PLLGDAR 105.82 0.00011053 48157000 2404.5 2367.7 2947.9 2223.5 2258.3 2383.9 1937.3 2385.2 1909.5 2745.8 TRUE FALSE 2438.170419 2626.213493 2203.666186 2080.894662 2565.918693 2806.651193 2304.892562 2182.562372 2092.916007 2186.204453 1.1152527 1.20126619 1.007987237 0.951829853 1.173686519 1.283800877 1.054289574 0.998334062 0.957328581 1 11.09421261 -7.999144752 24.99825635 0.991961131 1.119763762 0.325409314 0.088588529 39.82477248 1164023.959 0.041476349 0.027693334 1.00E-08 7.999144752 0.127802631 ASYHFSPEELDENTS(ph)PLLGDAR ddPTM_K562_Paclitaxel_30min_R1 1 ASYHFSPEELDENTSPLLGDAR 22 0 O75410-9;O75410;O75410-2;E5RJU4;E5RFM9;H0YAY0;R4GMT7;E7EVI4;E7ET87;O75410-3;O75410-7 O75410-9 TACC1 Transforming acidic coiled-coil-containing protein 1 1 ASYHFSPEELDENT(0.246)S(0.754)PLLGDAR 175.34 2.52E-20 63446000 1055.8 981.86 1427.9 1156.9 787.28 820.14 1056.1 1049.6 870.98 1270.3 TRUE FALSE 1070.584457 1089.062795 1067.408985 1082.701612 894.5208648 965.5803137 1256.489462 960.4299286 954.6415206 1011.412163 1.05850463 1.07677447 1.055364988 1.070485062 0.884427633 0.95468529 1.242311995 0.949593019 0.943869923 1 9.982155317 AT(ph)HTIGYGTTR ddPTM_K562_Paclitaxel_30min_R1 1 ATHTIGYGTTR 11 0 A0A6E1VY70;Q9NZU1 A0A6E1VY70 FLRT1 Leucine-rich repeat transmembrane protein FLRT1 1 AT(1)HTIGYGTTR 102.52 0.0083158 13171000 0 0 0 68.891 128.57 0 55.033 0 58.455 134.22 TRUE FALSE 0 0 0 64.4726396 146.0834107 0 65.47522446 0 64.06986393 106.8658903 0 0 0 0.603304192 1.366978839 0 0.612685902 0 0.599535209 1 6.739657634 -6.258946509 24.55417536 0.563632393 1.37E-05 0.334378695 0.384241366 217.115655 2138519.738 0.107391471 0.175404489 5.51E-07 6.258946509 -0.563618678 AT(ph)PPPS(ph)PLLSELLK ddPTM_K562_Paclitaxel_30min_R1 1 ATPPPSPLLSELLK 14 0 Q9H0E9-3;H7C128;H7C179;Q9H0E9-4;H7C127;Q9H0E9-2 Q9H0E9-3 BRD8 2 AT(1)PPPS(0.999)PLLS(0.001)ELLK 139.58 9.27E-06 2612100 889.85 894.5 1916.2 1125.7 876.84 825.83 790.04 1434.9 661.22 1572.1 TRUE FALSE 902.3106454 992.164535 1432.431611 1053.50264 996.280453 972.2793553 939.9459657 1312.996289 724.7331354 1251.705157 0.720865166 0.792650353 1.144384205 0.841653991 0.795938602 0.776763881 0.750932406 1.048966109 0.578996684 1 10.28967906 -5.528125565 24.99816791 0.865473223 0.738811337 0.08361792 0.154382857 302.2637584 1440124.948 0.038325067 0.102152661 2.96E-06 5.528125565 -0.126661886 AT(ph)SPLVSLYPALECR ddPTM_K562_Paclitaxel_30min_R1 1 ATSPLVSLYPALECR 15 0 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3;Q96G74-4 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 AT(0.5)S(0.5)PLVSLYPALECR 153.14 0.00010306 350520000 2486.9 3021.1 3620.6 3197.3 2675.4 2745.4 2898.6 3480.3 2225.9 3607.4 TRUE FALSE 2521.724273 3350.953915 2706.534751 2992.239489 3039.834775 3232.258143 3448.594218 3184.626792 2439.707641 2872.2099 0.877973533 1.166681417 0.942317883 1.041789978 1.058360942 1.125355825 1.200676252 1.108772305 0.849418297 1 11.48794547 -5.237539868 23.85474338 1.061168492 0.877973134 0.217310914 0.100035065 5849.031536 5837911.144 0.025054035 1.392025686 5.79E-06 5.237539868 -0.183195358 AT(ph)TPQLTDVSEDLDQQSLPSEPEETLSR ddPTM_K562_Paclitaxel_30min_R1 1 ATTPQLTDVSEDLDQQSLPSEPEETLSR 28 0 Q8NC44;H7C3D5;C9JIF3 Q8NC44 FAM134A Protein FAM134A 1 AT(0.499)T(0.499)PQLT(0.002)DVSEDLDQQSLPSEPEETLSR 141.23 3.79E-24 10070000 325.22 533.25 722.56 790.63 439.09 395.82 562.29 650.92 422.06 500.3 TRUE FALSE 329.7740834 591.4720383 540.1407915 739.9225305 498.9014919 466.0131194 668.9815921 595.6202831 462.6007488 398.3385854 0.827873813 1.484847464 1.355984108 1.85752161 1.252455851 1.169891988 1.679429552 1.49526133 1.16132548 1 8.637851424 -8.951973998 4.446386603 1.002107353 1.404563494 0.187695474 0.2663658 0.282898946 11.76230344 0.254484189 0.066662426 1.12E-09 8.951973998 0.402456141 ATADTPAPAS(ph)S(ph)GLSPK ddPTM_K562_Paclitaxel_30min_R1 1 ATADTPAPASSGLSPK 16 0 O60293-2;O60293;G3V1X1;O60293-4 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 2 AT(0.002)ADT(0.003)PAPAS(0.998)S(0.992)GLS(0.006)PK 115.38 0.0041121 11745000 1336.6 961.52 2067.6 1386.2 1230.6 1315.4 755.41 1259.8 1620.3 794.32 TRUE FALSE 1355.316524 1066.502005 1545.608808 1297.295336 1398.228554 1548.667721 898.745104 1152.772127 1775.937055 632.437148 2.143005875 1.686336751 2.443893141 2.051263656 2.210857725 2.448729847 1.42108209 1.822745755 2.808084662 1 9.304778301 -11.06205455 5.184871475 0.999985009 2.093909043 0.43157245 0.383233665 6.56E-05 1.19E-05 0.366396504 0.08886299 8.67E-12 11.06205455 1.093924035 ATAGDTHLGGEDFDNR ddPTM_K562_Paclitaxel_30min_R1 3 ATAGDTHLGGEDFDNR 16 0 A0A0G2JIW1;P0DMV8-2;P0DMV9;P0DMV8;V9GZ37;P48741;P17066;Q53FA3;P34931 A0A0G2JIW1;P48741;Q53FA3 HSPA1A;HSPA1B;HSPA7;HSPA6;HSPA1L Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1-like 0 ;; 169.98 6.72E-08 758350000 12917.4 12857.7 15519.3 14691.3 12219.2 10859 13115.9 16647 9382.8 16889.8 FALSE TRUE 13098.28345 14261.54717 11601.26077 13749.06577 13883.66191 12784.69118 15604.57356 15232.73344 10284.05986 13447.64949 0.97402029 1.060523416 0.862698034 1.02241405 1.032422947 0.950700804 1.160394132 1.132743195 0.764747763 1 13.71506641 ATAPQTQHVS(ph)PMR ddPTM_K562_Paclitaxel_30min_R1 13 ATAPQTQHVSPMR 13 0 E9PQ49;E9PI39;E9PK01;A0A087X1X7;E9PRY8;P29692;P29692-2;E9PPR1;E9PL12;E9PQZ1;P29692-4;E9PK06;P29692-3;E9PL71 E9PQ49;P29692-3 EEF1D Elongation factor 1-delta 1 ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQT(0.036)QHVS(0.964)PMR;AT(0.001)APQT(0.015)QHVS(0.984)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR;ATAPQT(0.005)QHVS(0.995)PMR;ATAPQTQHVS(1)PMR;AT(0.001)APQT(0.029)QHVS(0.971)PMR;ATAPQTQHVS(1)PMR;ATAPQTQHVS(1)PMR 163.56 4.66E-05 17104965700 39226.41 39280.2 50367.3 43734.2 38500.61 34814.09 35580.77 43647.14 37821.59 44470.36 TRUE FALSE 39775.70076 43568.94507 37651.45218 40929.28416 43745.0449 40987.88005 42332.03536 39939.04302 41454.52271 35407.27622 1.123376464 1.230508238 1.063381773 1.155956869 1.235481787 1.15761178 1.195574466 1.127989704 1.170791067 1 15.11175825 -10.48606259 0.944334891 0.993905573 1.164127629 0.498749974 0.048760299 24.28705095 13.55699978 0.611650859 0.015006188 3.27E-11 10.48606259 0.170222055 ATAPQTQHVS(ph)PMRQVEPPAK ddPTM_K562_Paclitaxel_30min_R1 2 ATAPQTQHVSPMRQVEPPAK 20 1 E9PQ49;E9PI39;E9PK01;A0A087X1X7;E9PRY8;P29692;P29692-2;E9PPR1;E9PL12;E9PQZ1;P29692-4;E9PK06;P29692-3;E9PL71 E9PQ49;P29692-3 EEF1D Elongation factor 1-delta 1 AT(0.053)APQT(0.174)QHVS(0.773)PMRQVEPPAK;ATAPQT(0.003)QHVS(0.997)PMRQVEPPAK 76.693 0.004259 314433000 2650.79 2708.4 4921.5 3176.85 2302.41 2273.69 2230.39 3248.33 2932.79 3329.11 TRUE FALSE 2687.909238 3004.112271 3679.006457 2973.10106 2616.037222 2676.896997 2653.594859 2972.364091 3214.497584 2650.635555 1.014062168 1.133355457 1.387971443 1.121655919 0.986947156 1.009907602 1.001116451 1.121377885 1.212727105 1 11.37212261 -6.522784713 24.99998256 1.056237877 1.187429166 0.210292745 0.107274487 5.168523311 1374346.779 0.03327966 0.043441478 3.00E-07 6.522784713 0.131191289 ATDDDMQSLASLMSVKPSDVGNLDDFAES(ph)DEDEAHGPGAPEAR ddPTM_K562_Paclitaxel_30min_R1 2 ATDDDMQSLASLMSVKPSDVGNLDDFAESDEDEAHGPGAPEAR 43 1 Q8N3D4;A0A0U1RQH4;E9PIH6 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 AT(0.001)DDDMQS(0.001)LAS(0.004)LMS(0.004)VKPS(0.009)DVGNLDDFAES(0.981)DEDEAHGPGAPEAR;ATDDDMQS(0.003)LAS(0.015)LMS(0.014)VKPS(0.203)DVGNLDDFAES(0.765)DEDEAHGPGAPEAR 40.87 0.0042625 90689000 1135.17 1215.42 1625.13 1305.05 972.77 990.33 872.09 1281.82 1256.27 1415.57 TRUE FALSE 1151.065882 1348.123666 1214.845832 1221.349934 1105.277743 1165.951121 1037.564525 1172.92139 1376.940347 1127.076057 1.02128501 1.196124838 1.077873871 1.083644645 0.980659412 1.034491961 0.920580753 1.040676344 1.221692483 1 10.13836916 -6.57906586 7.089296494 1.029432922 1.103826488 0.118053494 0.082597615 0.430306831 44.03843835 0.024844366 0.032225499 2.64E-07 6.57906586 0.074393567 ATDIPASAS(ph)PPPVAGVPFFK ddPTM_K562_Paclitaxel_30min_R1 2 ATDIPASASPPPVAGVPFFK 20 0 Q8N1G0;F8WCX2;Q8N1G0-2 Q8N1G0 ZNF687 Zinc finger protein 687 1 ATDIPAS(0.054)AS(0.946)PPPVAGVPFFK;ATDIPAS(0.021)AS(0.979)PPPVAGVPFFK 181.72 3.90E-16 30649000 6311 5449.7 10261.1 7155.9 6157.1 5558.4 4928.4 8042.3 3664.4 9427.1 TRUE FALSE 6399.373471 6044.716676 7670.558397 6696.952603 6995.801261 6544.104196 5863.538172 7359.056417 4016.381993 7505.851845 0.85258457 0.805333865 1.021943752 0.892230854 0.932046276 0.871866955 0.781195565 0.980442536 0.535100089 1 12.8738001 -7.551543432 7.571288951 0.82282466 0.901836194 0.072169602 0.129585897 0.546470994 112.1624184 0.04683543 0.036545182 2.81E-08 7.551543432 0.079011533 ATDPPESTRQDAPPWGSGVELTHLGS(ph)PSAQR ddPTM_K562_Paclitaxel_30min_R1 2 ATDPPESTRQDAPPWGSGVELTHLGSPSAQR 31 1 Q8NDX1-2;Q8NDX1 Q8NDX1-2 PSD4 PH and SEC7 domain-containing protein 4 1 ATDPPESTRQDAPPWGSGVELT(0.006)HLGS(0.762)PS(0.231)AQR;ATDPPESTRQDAPPWGSGVELT(0.008)HLGS(0.723)PS(0.269)AQR 110.67 1.76E-14 260780000 2674.11 2789.66 3871.8 3238.7 2722.9 2990.5 2604.58 3502.2 3312.5 3323.7 TRUE FALSE 2711.55579 3094.244513 2894.316204 3030.984278 3093.805079 3520.823186 3098.785458 3204.66625 3630.680426 2646.328116 1.02464837 1.169259584 1.093710257 1.145354675 1.16909353 1.330456025 1.170975526 1.210985981 1.371969109 1 11.36977624 -6.801027024 2.516702496 1.228163858 1.106461406 0.204260259 0.099596087 0.410959272 5.327485141 0.031285123 0.038607216 1.58E-07 6.801027024 -0.121702452 ATDS(ph)FSGRFEDVYQLQEDVLGEGAHAR ddPTM_K562_Paclitaxel_30min_R1 1 ATDSFSGRFEDVYQLQEDVLGEGAHAR 27 1 Q9HBH9;Q9HBH9-2 Q9HBH9 MKNK2 MAP kinase-interacting serine/threonine-protein kinase 2 1 AT(0.026)DS(0.478)FS(0.478)GRFEDVY(0.018)QLQEDVLGEGAHAR 100.04 4.65E-08 5656700 2306.9 2235.8 2262 2092.4 1694.3 1583.2 1563.9 2293.6 2711.1 2364.7 TRUE FALSE 2339.203717 2479.912205 1690.930124 1958.202829 1925.092345 1863.958291 1860.641861 2098.744364 2971.513269 1882.772842 1.242424824 1.317159537 0.898106286 1.040063244 1.022477222 0.990006999 0.988245538 1.114709282 1.578264357 1 10.87864323 -11.06442514 6.273886621 0.999999843 1.116033529 0.035392053 0.190870252 4.30E-07 6.41E-08 0.19000337 0.046082524 8.62E-12 11.06442514 0.116033685 ATEDGEEDEEMIES(ph)IENLEDLKGHSVR ddPTM_K562_Paclitaxel_30min_R1 2 ATEDGEEDEEMIESIENLEDLKGHSVR 27 1 P49736;H0Y8E6 P49736 MCM2 DNA replication licensing factor MCM2 1 ATEDGEEDEEMIES(1)IENLEDLKGHSVR;ATEDGEEDEEMIES(1)IENLEDLKGHSVR 132.72 1.87E-18 19836200 5692 4601.8 9662.5 5738.2 4254.9 4126.7 3881.7 6117.1 6049 8210.5 TRUE FALSE 5771.705561 5104.240086 7223.082371 5370.177535 4834.489416 4858.512303 4618.232311 5597.414173 6630.033478 6537.195593 0.882902382 0.780799658 1.104920645 0.821480321 0.739535684 0.743210484 0.706454663 0.85624089 1.014201485 1 12.67445615 -8.715412913 4.913667376 1.009174292 0.825278556 0.312777047 0.105883517 0.241263613 12.46743252 0.088642901 0.029323847 1.93E-09 8.715412913 -0.183895736 ATEES(ph)WT(ph)SNSK ddPTM_K562_Paclitaxel_30min_R1 1 ATEESWTSNSK 11 0 A0A5S6SZ32;Q96LW4-2;Q96LW4 A0A5S6SZ32 PRIMPOL DNA-directed primase/polymerase protein 2 ATEES(0.523)WT(0.712)S(0.383)NS(0.383)K 100.55 0.018973 32185000 0 0 109.69 0 0 0 0 0 0 0 TRUE FALSE 0 0 81.99740287 0 0 0 0 0 0 0 0 ATEESWT(ph)S(ph)NSK ddPTM_K562_Paclitaxel_30min_R1 3 ATEESWTSNSK 11 0 A0A5S6SZ32;Q96LW4-2;Q96LW4 A0A5S6SZ32 PRIMPOL DNA-directed primase/polymerase protein 2 ATEES(0.297)WT(0.757)S(0.94)NS(0.006)K;ATEES(0.328)WT(0.735)S(0.848)NS(0.09)K;ATEES(0.332)WT(0.675)S(0.496)NS(0.496)K 147.62 0.00064449 93164000 178.88 176.45 455.161 334.8 145.57 240.84 224.7 480.76 435.6 246.66 TRUE FALSE 181.3848719 195.7154077 340.2499762 313.3274265 165.3990985 283.5495924 267.335652 439.9164372 477.4413263 196.3905566 0.923592636 0.996562213 1.732516991 1.595430208 0.842194764 1.443804617 1.361244943 2.240008098 2.431080876 1 7.617581749 -8.172467839 5.7120822 1.998420617 1.274695479 0.281751811 0.444406861 0.251453703 12.698394 0.211450903 0.120063104 6.72E-09 8.172467839 -0.723725138 ATEPPS(ph)PDAGELSLASR ddPTM_K562_Paclitaxel_30min_R1 2 ATEPPSPDAGELSLASR 17 0 Q8IYB8 Q8IYB8 SUPV3L1 "ATP-dependent RNA helicase SUPV3L1, mitochondrial" 1 ATEPPS(1)PDAGELSLASR;ATEPPS(1)PDAGELSLASR 226.06 4.76E-31 142194000 4577.8 4980.5 5652.7 4501.3 3775.6 4405.2 4419.6 4570.6 4579.1 5754.5 TRUE FALSE 4641.903324 5524.287833 4225.605973 4212.606765 4289.900641 5186.400368 5258.196028 4182.299001 5018.943015 4581.729741 1.013133377 1.205721015 0.922273074 0.919435891 0.936305911 1.131974311 1.147644301 0.912820973 1.095425374 1 12.16167665 -7.256138309 24.96564654 1.057753759 1.002113215 0.078862097 0.099230708 1444.333423 6802149.935 0.035479477 0.034414386 5.54E-08 7.256138309 -0.055640543 ATGEPGTFVCTSHLPAAAS(ph)ASPK ddPTM_K562_Paclitaxel_30min_R1 2 ATGEPGTFVCTSHLPAAASASPK 23 0 Q8IY33-4;Q8IY33-2;Q8IY33 Q8IY33-4 MICALL2 MICAL-like protein 2 1 ATGEPGTFVCTS(0.001)HLPAAAS(0.894)AS(0.105)PK;ATGEPGTFVCTS(0.001)HLPAAAS(0.597)AS(0.402)PK 116.65 3.30E-06 68069000 5034.9 4364.2 9305.6 6354.7 4642.3 4373.4 4152.2 5786.1 4791.1 7760.2 TRUE FALSE 5105.404134 4840.698115 6956.28619 5947.137985 5274.659855 5148.961084 4940.058274 5294.534689 5251.306562 6178.66698 0.826295405 0.783453475 1.125855498 0.962527678 0.853688971 0.833344976 0.799534639 0.856905657 0.849909306 1 12.5930799 -6.779377335 23.45335405 0.853496744 0.928836067 0.07126632 0.09818768 275.5604172 360284.5829 0.031824433 0.036178858 1.66E-07 6.779377335 0.075339323 ATGGLCLLGAYADS(ph)DDDDNDVSEKLAQSK ddPTM_K562_Paclitaxel_30min_R1 1 ATGGLCLLGAYADSDDDDNDVSEKLAQSK 29 1 Q8N3X1;Q8N3X1-2 Q8N3X1 FNBP4 Formin-binding protein 4 1 ATGGLCLLGAY(0.017)ADS(0.98)DDDDNDVS(0.003)EKLAQSK 91.541 1.01E-06 15665000 620.38 486.14 1624.5 820.99 618.78 518.93 387.63 773.11 1024.6 1119.9 TRUE FALSE 629.067234 539.2184092 1214.374883 768.335376 703.068312 610.9549494 461.1807689 707.4294799 1123.017408 891.6637653 0.705498259 0.604732894 1.361920189 0.861687338 0.788490392 0.68518535 0.51721376 0.793381438 1.259462874 1 9.800355981 -8.747072379 24.70937269 1.129731353 0.792451892 0.272788639 0.22199691 250.8109343 431367.5756 0.160775565 0.060132188 1.79E-09 8.747072379 -0.337279461 ATIS(ph)DEEIER ddPTM_K562_Paclitaxel_30min_R1 2 ATISDEEIER 10 0 C9J0A7;Q9UQN3-2;Q9UQN3 C9J0A7 CHMP2B Charged multivesicular body protein 2b 1 AT(0.004)IS(0.996)DEEIER;ATIS(1)DEEIER 156.36 0.00019647 450120000 3420.2 3151.53 4590.1 3067.82 3058.8 3267.6 2855.98 3618.7 3349.09 3603.1 TRUE FALSE 3468.093352 3495.624703 3431.272485 2871.063756 3475.460346 3847.062981 3397.887296 3311.268848 3670.785059 2868.786242 1.208906157 1.218503021 1.196071159 1.000793895 1.21147414 1.341007191 1.184433767 1.154240354 1.279560326 1 11.48622476 -11.25052676 3.37608617 0.999440595 1.196808634 0.341664104 0.082982323 16396490.72 23554780.37 97396.63242 0.021644728 5.62E-12 11.25052676 0.197368039 ATLLNVPDLS(ph)DSIHSANASERDDISEIQSLASDHSGR ddPTM_K562_Paclitaxel_30min_R1 1 ATLLNVPDLSDSIHSANASERDDISEIQSLASDHSGR 37 1 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2;H0YKB1 G3V1L9 TJP1 Tight junction protein ZO-1 1 AT(0.002)LLNVPDLS(0.396)DS(0.335)IHS(0.107)ANAS(0.107)ERDDIS(0.036)EIQS(0.017)LAS(0.001)DHSGR 44.167 0.0072782 23822000 1901.1 1966.5 2051.2 1635.9 1450.6 1410.3 1650.5 1462.8 1384.9 2044.8 TRUE FALSE 1927.721265 2181.20912 1533.349191 1530.980696 1648.196279 1660.396903 1963.673759 1338.526009 1517.925833 1628.068638 1.184054051 1.339752557 0.941820975 0.940366186 1.012362895 1.01985682 1.206136961 0.822155761 0.932347567 1 10.66894581 -5.76562832 24.99933002 0.986643557 1.261903336 0.561007023 0.098181661 70.47183326 420581.9016 0.026328104 0.058139636 1.72E-06 5.76562832 0.275259778 ATLLNVPDLSDSIHSANASERDDISEIQS(ph)LASDHSGR ddPTM_K562_Paclitaxel_30min_R1 1 ATLLNVPDLSDSIHSANASERDDISEIQSLASDHSGR 37 1 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2;H0YKB1 G3V1L9 TJP1 Tight junction protein ZO-1 1 ATLLNVPDLS(0.016)DS(0.047)IHS(0.076)ANAS(0.032)ERDDIS(0.127)EIQS(0.564)LAS(0.127)DHS(0.011)GR 46.608 0.0049746 36507000 2245.6 2441.9 2627 2590.3 2281.5 2398.1 2265.8 2858.1 1865 3076.5 TRUE FALSE 2277.045328 2708.5149 1963.78136 2424.169752 2592.278926 2823.369364 2695.723722 2615.286565 2044.141583 2449.507611 0.929593081 1.105738511 0.801704535 0.989655938 1.05828572 1.152627308 1.100516573 1.067678481 0.834511219 1 11.25827606 -6.590601355 5.564963965 1.047113905 0.951537434 0.123874578 0.104300115 0.399473531 23.05338228 0.03158923 0.041222208 2.57E-07 6.590601355 -0.095576471 ATLTAS(ph)PLGAS ddPTM_K562_Paclitaxel_30min_R1 1 ATLTASPLGAS 11 0 Q13111;Q13111-3 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 ATLT(0.016)AS(0.984)PLGAS 93.442 0.014702 41523000 5306.5 4692.5 5843.7 5446.4 4736.2 4488.7 3991.2 5383.5 4130.9 6073.7 TRUE FALSE 5380.807372 5204.843019 4368.385661 5097.092281 5381.350625 5284.707921 4748.509365 4926.138072 4527.691402 4835.876606 1.112685002 1.076297731 0.903328603 1.054016199 1.11279734 1.092812814 0.981933525 1.018664965 0.936271078 1 12.23956172 -7.780885715 24.43848479 0.985772761 1.05464786 0.271929641 0.059432602 310.3002557 389953.9234 0.026779606 0.018086873 1.66E-08 7.780885715 0.068875099 ATMAQNENVVVQPVVAENIPVIPLSDS(ph)PPPSR ddPTM_K562_Paclitaxel_30min_R1 1 ATMAQNENVVVQPVVAENIPVIPLSDSPPPSR 32 0 A0A087WYW3;P30414 A0A087WYW3 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 ATMAQNENVVVQPVVAENIPVIPLS(0.262)DS(0.58)PPPS(0.158)R 75.034 2.60E-07 0 409.35 441.19 389.46 513.42 463.46 445.72 391.1 373.11 366.18 483.49 TRUE FALSE 415.082163 489.3606162 291.1360062 480.4915392 526.5910984 524.7621838 465.3091833 341.4119766 401.3532251 384.9544726 1.078262996 1.271216861 0.756286852 1.248177573 1.367930849 1.363179859 1.208738218 0.886889232 1.0425992 1 8.588544023 -8.250221986 24.60382145 0.973558162 1.18800661 0.241836932 0.16894841 871.7977174 1912175.24 0.086008994 0.049051192 5.62E-09 8.250221986 0.214448448 ATMAQNENVVVQPVVAENIPVIPLSDSPPPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 ATMAQNENVVVQPVVAENIPVIPLSDSPPPSR 32 0 A0A087WYW3;P30414 A0A087WYW3 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 ATMAQNENVVVQPVVAENIPVIPLS(0.047)DS(0.216)PPPS(0.737)R;ATMAQNENVVVQPVVAENIPVIPLS(0.071)DS(0.326)PPPS(0.603)R 97.762 7.32E-12 167291000 3400.6 3163.7 3801.3 3769.3 3066.3 3531.1 2927.4 4010.1 2789 4182.7 TRUE FALSE 3448.218892 3509.123465 2841.614801 3527.553969 3483.981973 4157.291006 3482.858868 3669.416975 3056.895912 3330.263444 1.035419254 1.053707469 0.853270274 1.059241717 1.046158069 1.248336979 1.045820827 1.10183985 0.917914142 1 11.70142059 -6.491316441 24.75486124 1.071891265 0.982784194 0.123929446 0.093179181 1116.722618 875864.8763 0.026463842 0.039203798 3.23E-07 6.491316441 -0.08910707 ATNES(ph)EDEIPQLVPIGK ddPTM_K562_Paclitaxel_30min_R1 4 ATNESEDEIPQLVPIGK 17 0 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 AT(0.094)NES(0.906)EDEIPQLVPIGK;AT(0.285)NES(0.715)EDEIPQLVPIGK;AT(0.213)NES(0.787)EDEIPQLVPIGK;AT(0.158)NES(0.842)EDEIPQLVPIGK 103.71 0.0011874 506783000 21882.9 19011.4 35818.6 22601.4 18234.8 17434.3 16479.8 22907.4 20950.5 27413.5 TRUE FALSE 22189.32811 21087.12894 26775.75143 21151.84736 20718.68848 20526.02832 19606.75602 20961.27339 22962.88913 21826.61365 1.016617991 0.966120044 1.226747853 0.969085159 0.949239713 0.940412867 0.89829583 0.960353893 1.052059174 1 14.4138007 -6.481912233 24.99813985 0.959930444 1.06586758 0.293382256 0.072556916 622.7426568 380002.9105 0.020562881 0.030495779 3.30E-07 6.481912233 0.105937135 ATNES(ph)EDEIPQLVPIGKK ddPTM_K562_Paclitaxel_30min_R1 1 ATNESEDEIPQLVPIGKK 18 1 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 AT(0.055)NES(0.945)EDEIPQLVPIGKK 91.337 0.0013207 301290000 1112.8 645.21 2595.2 1282.7 709.61 651.48 544.24 1181.7 1846.7 1246.7 TRUE FALSE 1128.382633 715.6562098 1940.009663 1200.433363 806.2708958 767.0108308 647.5066989 1081.307209 2024.083786 992.6218557 1.136769886 0.720975672 1.954429728 1.209356168 0.812263896 0.772712012 0.652319607 1.08934455 2.039128773 1 9.95510041 -10.58177353 13.22552914 1.000015411 1.128626544 0.007205631 0.462482419 0 0 0.461689205 0.11197608 2.62E-11 10.58177353 0.128611133 ATPELGSSENSAS(ph)SPPR ddPTM_K562_Paclitaxel_30min_R1 1 ATPELGSSENSASSPPR 17 0 Q9BX63 Q9BX63 BRIP1 Fanconi anemia group J protein 1 ATPELGSSENS(0.001)AS(0.556)S(0.443)PPR 191.44 4.38E-11 13770000 2167.5 2035.2 2982.4 2561.7 2228 2038.2 1960.6 2698.3 1620.7 2677.7 TRUE FALSE 2197.851687 2257.410019 2229.456234 2397.404028 2531.49132 2399.646152 2332.613615 2469.062573 1776.375476 2131.98327 1.030895372 1.058831019 1.045719385 1.124494766 1.187387986 1.125546427 1.094105028 1.158105979 0.833203291 1 11.0579804 -8.756010045 24.99998153 0.916601628 1.103711424 0.610268487 0.059625215 80.38272499 370144.5116 0.044113248 0.015588441 1.75E-09 8.756010045 0.187109796 ATPGAPALTSMT(ph)PTAVER ddPTM_K562_Paclitaxel_30min_R1 3 ATPGAPALTSMTPTAVER 18 0 P54198;P54198-2 P54198 HIRA Protein HIRA 1 ATPGAPALT(0.001)S(0.008)MT(0.99)PT(0.001)AVER;ATPGAPALT(0.218)S(0.013)MT(0.762)PT(0.007)AVER;ATPGAPALT(0.068)S(0.014)MT(0.734)PT(0.184)AVER 198.98 8.66E-15 104196000 3137.1 2937.24 3043.98 2539.25 2152.35 2605.78 3082.57 3798.9 3005.06 4117.5 TRUE FALSE 3181.029079 3257.937796 2275.489602 2376.39387 2445.53651 3067.878496 3667.471565 3476.159733 3293.70944 3278.35124 0.970313687 0.993773259 0.694095731 0.7248747 0.745965374 0.935799209 1.11869391 1.060337797 1.004684733 1 11.67875472 -7.524190508 5.160057238 1.049604297 0.82304544 0.537350592 0.09622326 0.152298714 12.4391026 0.040779285 0.032970618 2.99E-08 7.524190508 -0.226558857 ATPGAPALTSMTPT(ph)AVER ddPTM_K562_Paclitaxel_30min_R1 1 ATPGAPALTSMTPTAVER 18 0 P54198;P54198-2 P54198 HIRA Protein HIRA 1 ATPGAPALTS(0.001)MT(0.232)PT(0.767)AVER 188.9 2.61E-12 12451000 665.44 798.06 437.51 542.69 522.94 659.61 767.03 776.66 756.4 715.23 TRUE FALSE 674.7582131 885.1948897 327.0551894 507.8842924 594.1732814 776.5825721 912.5699383 710.6778852 829.0555997 569.4657334 1.184896954 1.554430474 0.574319349 0.891861024 1.043387243 1.363703778 1.602501933 1.247973045 1.455848089 1 9.153465223 -7.26195352 9.775721709 1.366400244 1.042529164 0.210629335 0.271340217 0.149575755 366.264329 0.096128788 0.09015221 5.47E-08 7.26195352 -0.32387108 ATPPSAMGRASPPLFQS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 ATPPSAMGRASPPLFQSR 18 1 O15055 O15055 PER2 Period circadian protein homolog 2 1 ATPPSAMGRAS(0.16)PPLFQS(0.84)R 63.044 0.030224 0 958.95 863.45 1477.3 1066.9 1246.1 788.14 869.59 1132.5 1239.5 1002.8 TRUE FALSE 972.3782586 957.724391 1104.337344 998.4738093 1415.839917 927.905563 1034.590163 1036.287056 1358.559513 798.4288096 1.217864695 1.199511315 1.383138147 1.250548324 1.773282602 1.162164431 1.295782605 1.297907896 1.701541198 1 9.641019968 -5.760685385 24.95942368 1.37045649 1.208687951 0.067237055 0.218644978 48.38719692 1601458.71 0.054187562 0.127200033 1.74E-06 5.760685385 -0.161768539 ATQAS(ph)QEY ddPTM_K562_Paclitaxel_30min_R1 1 ATQASQEY 8 0 P16104 P16104 H2AFX Histone H2AX 1 ATQAS(0.826)QEY(0.174) 120.45 0.0016814 40000000 8130.3 7660.8 10303 7265.9 6982.2 6771.1 6624.9 7890.6 7753.4 9293.4 TRUE FALSE 8244.149284 8497.232051 7701.880224 6799.897695 7933.29385 7971.859514 7881.940191 7220.244278 8498.148713 7399.399979 1.114164568 1.148367716 1.040879023 0.918979608 1.072153671 1.07736567 1.065213425 0.975787807 1.148491599 1 12.85319257 -5.770182023 23.40005179 1.035932558 1.131266145 0.28274577 0.059792564 94.27551706 252338.4518 0.015529209 0.033225884 1.70E-06 5.770182023 0.095333587 ATRSGAQASSTPLS(ph)PT(ph)RIT(ph)RLQEK ddPTM_K562_Paclitaxel_30min_R1 1 ATRSGAQASSTPLSPTRITRLQEK 24 3 P02545-6;P02545;P02545-3;Q3BDU5;P02545-2 P02545-6;Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C 3 AT(0.001)RS(0.001)GAQAS(0.003)S(0.002)T(0.008)PLS(0.988)PT(0.999)RIT(0.998)RLQEK 52.03 0.027845 28530000 1143.1 953.57 926.67 1081.7 1008.1 916.7 1005.2 1474.8 1051.3 1149.7 TRUE FALSE 1159.106927 1057.683997 692.7206976 1012.324604 1145.420287 1079.263874 1195.931453 1349.506535 1152.282062 915.3905089 1.266243112 1.155445667 0.756748831 1.105893707 1.251291417 1.17902017 1.306471327 1.474241344 1.258787426 1 9.838243523 -6.719788921 4.134771682 1.270100199 1.049528368 0.205422764 0.164056477 0.29823559 10.84172955 0.052004778 0.065866358 1.91E-07 6.719788921 -0.220571831 ATS(ph)LPSLDTPGELR ddPTM_K562_Paclitaxel_30min_R1 2 ATSLPSLDTPGELR 14 0 D6RAM3;Q7L591 D6RAM3 DOK3 Docking protein 3 1 AT(0.001)S(0.917)LPS(0.082)LDTPGELR;AT(0.143)S(0.831)LPS(0.026)LDTPGELR 167.22 3.92E-05 121896000 2101.8 2436.3 2968.4 2839.7 2304.08 2418.6 2402.9 2785.6 2145.28 2995.9 TRUE FALSE 2131.231685 2702.303473 2218.990707 2657.574352 2617.934704 2847.504751 2858.837731 2548.945893 2351.343729 2385.333936 0.893473091 1.132882668 0.930264176 1.114130945 1.097512875 1.193755184 1.198506292 1.068590798 0.985750336 1 11.21997554 -5.252717874 24.4287748 1.086466878 0.893472955 0.308672583 0.083333389 1068.16214 2991814.421 0.021626994 0.246887142 5.59E-06 5.252717874 -0.192993923 ATS(ph)PEAGGGGGALK ddPTM_K562_Paclitaxel_30min_R1 2 ATSPEAGGGGGALK 14 0 Q13233 Q13233 MAP3K1 Mitogen-activated protein kinase kinase kinase 1 1 AT(0.013)S(0.987)PEAGGGGGALK;AT(0.082)S(0.918)PEAGGGGGALK 170.95 6.39E-06 76377000 10687.6 9253.5 17716.2 11407 9168.1 7868.4 7772.8 11779.7 9572.3 12726.7 TRUE FALSE 10837.25937 10263.82842 13243.5262 10675.40608 10416.95044 9263.750262 9247.648223 10778.94096 10491.76219 10132.99155 1.069502458 1.012911969 1.306971009 1.053529554 1.028023203 0.914216716 0.912627645 1.063747157 1.035406191 1 13.30677254 -6.676311638 3.311281534 0.986061949 1.124839054 0.341512084 0.084109217 0.283666642 6.182970615 0.02721754 0.035493581 2.11E-07 6.676311638 0.138777105 ATS(ph)PLVSLYPALECR ddPTM_K562_Paclitaxel_30min_R1 3 ATSPLVSLYPALECR 15 0 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3;Q96G74-4 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 AT(0.005)S(0.995)PLVSLYPALECR;AT(0.007)S(0.993)PLVSLYPALECR;AT(0.005)S(0.995)PLVSLYPALECR 274.38 2.41E-107 959720000 10762.1 11085 13755 12324.3 10504.5 9483.5 10989 13691.5 9602.7 14638.7 TRUE FALSE 10912.8026 12295.29779 10282.38013 11533.87456 11935.39074 11165.26557 13074.10538 12528.32162 10525.08224 11655.3249 0.936293299 1.054908198 0.882204504 0.98957984 1.024029003 0.957954039 1.121728093 1.074901105 0.903027786 1 13.5087016 -6.524970443 14.25126838 1.018781672 0.962243988 0.114021667 0.068478478 0.698262387 4653.855932 0.020089885 0.026531655 2.99E-07 6.524970443 -0.056537685 ATS(ph)PSSSVSGDFDDGHHSVSTPGPSR ddPTM_K562_Paclitaxel_30min_R1 1 ATSPSSSVSGDFDDGHHSVSTPGPSR 26 0 C9JCJ2;C9J053;C9JQF1;C9JPI5;E7EVG2;Q86U86-6;Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-3;Q86U86-9;Q86U86-2;Q86U86-8;Q86U86;C9J409 C9JCJ2 PBRM1 Protein polybromo-1 1 AT(0.126)S(0.605)PS(0.036)S(0.036)S(0.162)VS(0.035)GDFDDGHHSVSTPGPSR 137.42 3.71E-15 116960000 174.3 147.31 157.57 330.77 211.48 190.73 162.92 186.89 185.62 373.66 TRUE FALSE 176.7407378 163.393804 117.7895047 309.5558927 240.2871564 224.5532875 193.8332195 171.012528 203.4496304 297.5078869 0.594070764 0.549208311 0.395920612 1.040496425 0.807666509 0.754780957 0.651522961 0.574816788 0.683846175 1 8.216784104 -12.67007701 1.936647339 7.462534483 0.674452937 0.264429536 0.163846096 7811917.427 254458.4336 222628447.5 0.045185574 2.14E-13 12.67007701 -6.788081546 ATS(ph)SSSGSLSATGR ddPTM_K562_Paclitaxel_30min_R1 1 ATSSSSGSLSATGR 14 0 Q03252 Q03252 LMNB2 Lamin-B2 1 AT(0.002)S(0.507)S(0.367)S(0.043)S(0.08)GS(0.002)LSATGR 102.73 0.0023877 0 1127.2 998.38 1417.8 964.01 929.14 927.5 1147.6 1261.2 1317.5 1529 TRUE FALSE 1142.984278 1107.386505 1059.858855 902.1827133 1055.704598 1091.979102 1365.351109 1154.053188 1444.051762 1217.388961 0.93888175 0.909640666 0.870600021 0.741080084 0.86718759 0.896984561 1.12154057 0.947974086 1.186187659 1 10.24957447 -7.658237855 5.576967975 1.058865852 0.863509927 0.603576018 0.076867575 0.146829352 6.757926125 0.029778599 0.022775026 2.20E-08 7.658237855 -0.195355925 ATSCRGLLGPS(ph)LGPETPS(ph)RVGMK ddPTM_K562_Paclitaxel_30min_R1 1 ATSCRGLLGPSLGPETPSRVGMK 23 2 E9PCD1 E9PCD1 WNK2 2 AT(0.027)S(0.109)CRGLLGPS(0.856)LGPET(0.008)PS(1)RVGMK 51.119 0.030166 0 256.56 164.12 401.04 303.12 162.83 376.25 285.66 436.41 150.68 206.69 TRUE FALSE 260.1526316 182.0391766 299.792492 283.6792399 185.0102027 442.9726547 339.8624938 399.3342465 165.1534873 164.5664645 1.580836243 1.106174196 1.821710716 1.723797377 1.124227851 2.691755309 2.065198974 2.426583372 1.003567086 1 7.362526562 -5.780087378 24.39225063 1.807217454 1.343505295 0.059309428 0.558240604 373.5521717 488620.5684 0.144474418 0.301670581 1.66E-06 5.780087378 -0.463712159 ATSEVPGSQAS(ph)PNPVPGDGLHR ddPTM_K562_Paclitaxel_30min_R1 3 ATSEVPGSQASPNPVPGDGLHR 22 0 Q96GM8;Q96GM8-2 Q96GM8 TOE1 Target of EGR1 protein 1 1 ATSEVPGSQAS(1)PNPVPGDGLHR;ATSEVPGSQAS(1)PNPVPGDGLHR;ATSEVPGS(0.003)QAS(0.997)PNPVPGDGLHR 137.85 2.85E-12 106745000 5363.7 5569.4 6187 5808.4 5066 4813.4 4454 5904.5 5785.5 6664.3 TRUE FALSE 5438.808348 6177.485927 4625.01533 5435.875221 5756.074968 5666.988907 5299.123249 5402.87587 6341.223125 5306.112002 1.025008207 1.164220794 0.871639221 1.024455424 1.08480088 1.068011551 0.998682886 1.018236303 1.195079019 1 12.37343941 -6.646451959 8.843603857 1.058893767 1.020415465 0.049955424 0.084193762 1.023596633 75.03971485 0.025031841 0.032319918 2.26E-07 6.646451959 -0.038478302 ATSILSYLS(ph)DSDLR ddPTM_K562_Paclitaxel_30min_R1 1 ATSILSYLSDSDLR 14 0 A0A499FJE4;Q96MK2;Q96MK2-2 A0A499FJE4 FAM65C Protein FAM65C 1 ATSILSYLS(0.999)DS(0.001)DLR 143.64 9.95E-06 4142400 588.27 604.73 708.59 823.83 659.44 568.43 532.81 594.02 605.07 872.68 TRUE FALSE 596.507595 670.7564665 529.6976908 770.9932311 749.2668924 669.2330793 633.907916 543.5542932 663.189677 694.827337 0.858497591 0.965357047 0.762344345 1.109618448 1.07834976 0.963164579 0.912324375 0.782286856 0.954466875 1 9.440510706 -11.1667255 15.65975827 0.999999947 0.933313972 0.035667205 0.106095131 0 0 0.107884368 0.026165803 6.81E-12 11.1667255 -0.066685975 ATSILSYLS(ph)DSDLRGPSLR ddPTM_K562_Paclitaxel_30min_R1 2 ATSILSYLSDSDLRGPSLR 19 1 A0A499FJE4;Q96MK2;Q96MK2-2 A0A499FJE4 FAM65C Protein FAM65C 1 ATSILS(0.002)YLS(0.982)DS(0.016)DLRGPSLR;ATSILS(0.001)YLS(0.903)DS(0.096)DLRGPSLR 96.234 0.00077511 43785000 2453.9 1849.65 2979.9 2618.6 1683.29 1814.92 1972.89 2330.4 3348.2 2463 TRUE FALSE 2488.262171 2051.601042 2227.58739 2450.654716 1912.582596 2136.770579 2347.235578 2132.417974 3669.80957 1961.039248 1.268848736 1.046180511 1.13592188 1.249671427 0.97529032 1.089611328 1.196934524 1.087391788 1.871359573 1 10.93740269 ATSPS(ph)SSVSGDFDDGHHSVSTPGPSR ddPTM_K562_Paclitaxel_30min_R1 1 ATSPSSSVSGDFDDGHHSVSTPGPSR 26 0 C9JCJ2;C9J053;C9JQF1;C9JPI5;E7EVG2;Q86U86-6;Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-3;Q86U86-9;Q86U86-2;Q86U86-8;Q86U86;C9J409 C9JCJ2 PBRM1 Protein polybromo-1 1 AT(0.032)S(0.145)PS(0.272)S(0.272)S(0.272)VS(0.006)GDFDDGHHSVSTPGPSR 109.05 5.69E-07 92163000 351.19 277.53 272.98 401.62 307.73 403.88 339.68 420.55 328.57 459.56 TRUE FALSE 356.1077435 307.8316639 204.0628228 375.8618908 349.6480359 475.5024472 404.1325068 384.8216525 360.1306166 365.9014197 0.973234113 0.841296719 0.55769891 1.027221734 0.955579883 1.299537038 1.104484664 1.051708552 0.98422853 1 8.515311203 -6.457540007 10.54728402 1.073938144 0.794865442 0.474463936 0.130409728 0.613413799 97.23662474 0.037918642 0.056209549 3.49E-07 6.457540007 -0.279072702 ATSS(ph)SSGSLSATGR ddPTM_K562_Paclitaxel_30min_R1 1 ATSSSSGSLSATGR 14 0 Q03252 Q03252 LMNB2 Lamin-B2 1 ATS(0.036)S(0.955)S(0.007)SGSLSATGR 131.08 1.77E-10 0 925.23 855.4 1195.9 763.04 736.32 785.68 870.98 936.46 1022.7 1021.1 TRUE FALSE 938.1860746 948.7954648 893.9802543 714.1020296 836.61925 925.0093165 1036.243908 856.9018778 1120.934905 812.9992595 1.153981463 1.167031155 1.09960771 0.87835508 1.029052905 1.137773873 1.274593914 1.05400081 1.378764976 1 9.667110228 -7.479688188 6.125675274 1.184812443 1.064082792 0.153355118 0.123553187 0.377664419 37.49119531 0.044788261 0.038519965 3.31E-08 7.479688188 -0.12072965 ATSSS(ph)SGSLSATGR ddPTM_K562_Paclitaxel_30min_R1 2 ATSSSSGSLSATGR 14 0 Q03252 Q03252 LMNB2 Lamin-B2 1 AT(0.002)S(0.001)S(0.032)S(0.916)S(0.047)GS(0.002)LSATGR;ATSS(0.027)S(0.925)S(0.041)GS(0.007)LSATGR 151.3 7.74E-05 144318000 4406.8 3947.2 5097.5 5076.6 4221 4663 3951.5 4210.1 5052.4 5565.8 TRUE FALSE 4468.508796 4378.168645 3810.57308 4751.009598 4795.971662 5489.917578 4701.276497 3852.425726 5537.705595 4431.486905 1.008354282 0.987968314 0.859885894 1.072102818 1.082248863 1.238843236 1.060880151 0.869330274 1.249626979 1 12.11357513 -6.397125641 8.351738491 1.08298355 0.955904361 0.230775865 0.108671987 0.458777746 29.0261084 0.030837944 0.045780329 4.01E-07 6.397125641 -0.127079188 ATSSSSGS(ph)LSATGR ddPTM_K562_Paclitaxel_30min_R1 4 ATSSSSGSLSATGR 14 0 Q03252 Q03252 LMNB2 Lamin-B2 1 ATSS(0.001)S(0.022)S(0.109)GS(0.867)LSATGR;ATSS(0.003)S(0.046)S(0.115)GS(0.822)LS(0.013)ATGR;ATSS(0.001)S(0.076)S(0.076)GS(0.835)LS(0.011)ATGR;ATS(0.008)SS(0.015)S(0.18)GS(0.616)LS(0.18)ATGR 198.48 5.76E-09 72402100 4622.08 4333.32 4801.7 4234.27 4078.98 4108.76 4556.96 5912.9 5387.26 6719.48 TRUE FALSE 4686.80338 4806.446532 3589.451448 3962.702874 4634.606134 4837.390896 5421.619371 5410.562238 5904.730394 5350.046288 0.876030436 0.898393448 0.6709197 0.740685718 0.866274025 0.904177391 1.013378031 1.011311295 1.103678375 1 12.38533566 -7.539557278 1.561712549 1.043364734 0.798177557 0.713954352 0.066714966 0.225428399 1.114416246 0.036344912 0.026483565 2.89E-08 7.539557278 -0.245187177 ATST(ph)SPNSQSSK ddPTM_K562_Paclitaxel_30min_R1 1 ATSTSPNSQSSK 12 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;A0A2R8Y424;A0A2R8Y7F4;A0A2R8YET2;H7C5N8 E7EPN9 PRRC2C Protein PRRC2C 1 ATS(0.052)T(0.468)S(0.468)PNS(0.006)QS(0.004)S(0.001)K 114.76 0.010531 21430000 5702.5 4960.1 10344 6382.8 5687.9 4653.5 4716.4 6287.5 5972.9 7418.8 TRUE FALSE 5782.352594 5501.660492 7732.529267 5973.435776 6462.688277 5478.732887 5611.312279 5753.33763 6546.623733 5906.844488 0.978924129 0.931404323 1.30907954 1.011273581 1.094101646 0.927522791 0.949967837 0.974012037 1.10831151 1 12.52817191 -7.24524676 24.36769116 0.987713895 1.068117063 0.108276808 0.104185058 1362.271714 2050033.478 0.03524482 0.035137439 5.69E-08 7.24524676 0.080403168 ATSTS(ph)PNSQSSK ddPTM_K562_Paclitaxel_30min_R1 3 ATSTSPNSQSSK 12 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;A0A2R8Y424;A0A2R8Y7F4;A0A2R8YET2;H7C5N8 E7EPN9 PRRC2C Protein PRRC2C 1 ATS(0.012)T(0.094)S(0.823)PNS(0.07)QS(0.001)SK;ATS(0.005)T(0.034)S(0.88)PNS(0.079)QS(0.001)SK;ATS(0.018)T(0.217)S(0.746)PNS(0.018)QS(0.001)SK 206.46 7.46E-10 31029300 15012.5 13285.6 27872.7 16711.1 13691.5 11897.1 11942.3 17116.1 16108.6 20185.9 TRUE FALSE 15222.72132 14736.16674 20835.89216 15639.32484 15556.5141 14006.88364 14208.28908 15661.98047 17655.90301 16072.0025 0.947157725 0.916884298 1.296409216 0.973078796 0.967926312 0.871508304 0.884039751 0.974488429 1.09855029 1 13.97226207 -6.494002098 24.88732502 0.957299063 1.055643814 0.109533665 0.111311314 1404.004173 1210040.048 0.032562155 0.048191038 3.21E-07 6.494002098 0.098344751 ATSVALPGWS(ph)PSETR ddPTM_K562_Paclitaxel_30min_R1 1 ATSVALPGWSPSETR 15 0 Q16513-4;Q16513-3;Q16513-2;Q16513;Q16513-5;B1AL79 Q16513-4 PKN2 Serine/threonine-protein kinase N2 1 ATSVALPGWS(0.988)PS(0.012)ETR 136.57 8.83E-06 25026000 1459.4 1428.1 1728.8 1750.2 1759.1 1635.2 1478.4 1841 1225.6 1721.7 TRUE FALSE 1479.836103 1584.024788 1292.343058 1637.950006 1998.719202 1925.179761 1758.918682 1684.595559 1343.324356 1370.816595 1.079528879 1.155533711 0.942754168 1.194871737 1.458050048 1.4044036 1.283117442 1.228899304 0.979944626 1 10.42081985 -6.509946551 24.27238437 1.256026682 1.068884124 0.179365586 0.151525623 635.6223877 1192997.687 0.044894154 0.063156155 3.09E-07 6.509946551 -0.187142558 ATSVALPGWSPS(ph)ETR ddPTM_K562_Paclitaxel_30min_R1 1 ATSVALPGWSPSETR 15 0 Q16513-4;Q16513-3;Q16513-2;Q16513;Q16513-5;B1AL79 Q16513-4 PKN2 Serine/threonine-protein kinase N2 1 ATSVALPGWS(0.133)PS(0.838)ET(0.029)R 136.63 1.19E-14 0 901.97 1372.1 1402.1 1628.8 1266.2 1173.7 1274.4 1443.5 1129.9 1564.1 TRUE FALSE 914.6003628 1521.910518 1048.122514 1524.336058 1438.677877 1381.839215 1516.210747 1320.865665 1238.431944 1245.335561 0.734420819 1.222088701 0.841638629 1.224036401 1.155253188 1.109611946 1.217511805 1.060650403 0.99445642 1 10.28231882 -5.248561081 24.43763902 1.096388899 0.734420501 0.457003062 0.116730864 1376.38162 2611737.189 0.028075764 0.492057845 5.64E-06 5.248561081 -0.361968398 ATSVALPGWSPSETRS(ph)SFMSR ddPTM_K562_Paclitaxel_30min_R1 1 ATSVALPGWSPSETRSSFMSR 21 1 Q16513-4;Q16513-3;Q16513-2;Q16513;Q16513-5;B1AL79 Q16513-4 PKN2 Serine/threonine-protein kinase N2 1 ATSVALPGWS(0.001)PS(0.113)ET(0.09)RS(0.335)S(0.335)FMS(0.126)R 53.496 0.030998 9503900 325.34 389.79 456.6 289.36 246.8 236.87 326.93 549.04 405.79 539.66 TRUE FALSE 329.8957638 432.3485904 341.3256828 270.8017447 280.4183384 278.8755687 388.9632608 502.395625 444.7679426 429.6769958 0.767776183 1.006217681 0.794377372 0.630244922 0.652625905 0.649035372 0.905245719 1.16924022 1.035121608 1 8.747108729 -8.01213215 5.056887362 1.072653725 0.754397143 0.632548809 0.108846117 0.130918805 9.754575281 0.056413836 0.034342216 9.72E-09 8.01213215 -0.318256583 ATT(ph)PADGEEPAPEAEALAAAR ddPTM_K562_Paclitaxel_30min_R1 3 ATTPADGEEPAPEAEALAAAR 21 0 Q5JZ02;Q96S44 Q5JZ02 TP53RK TP53-regulating kinase 1 AT(0.147)T(0.853)PADGEEPAPEAEALAAAR;AT(0.065)T(0.935)PADGEEPAPEAEALAAAR;AT(0.067)T(0.933)PADGEEPAPEAEALAAAR 142.55 4.78E-16 56405000 2418.73 2458.98 3337.45 2720.48 2380.39 2080 2004.49 2580.87 2513.71 2958.79 TRUE FALSE 2452.599682 2727.459752 2494.86947 2546.000589 2704.639418 2448.858795 2384.831513 2361.608984 2755.163077 2355.786974 1.041095697 1.157770113 1.059038656 1.080743131 1.148083188 1.039507741 1.012329018 1.002471365 1.169529804 1 11.20199337 -7.307134737 24.51966594 1.042894605 1.097652483 0.179127209 0.056204267 598.0152589 320886.8395 0.019210326 0.016942 4.93E-08 7.307134737 0.054757878 ATT(ph)PQLTDVSEDLDQQSLPSEPEETLSR ddPTM_K562_Paclitaxel_30min_R1 1 ATTPQLTDVSEDLDQQSLPSEPEETLSR 28 0 Q8NC44;H7C3D5;C9JIF3 Q8NC44 FAM134A Protein FAM134A 1 AT(0.21)T(0.778)PQLT(0.012)DVSEDLDQQSLPSEPEETLSR 138.02 1.75E-19 8584400 775.37 852.87 1099.3 1017.1 750.11 646.02 656.21 788 779.91 867.56 TRUE FALSE 786.2275722 945.9892308 821.768119 951.8677584 852.2876815 760.5825764 780.7224219 721.0544815 854.8238402 690.7507958 1.138221739 1.369508709 1.189673793 1.378019054 1.233856966 1.101095476 1.130251933 1.043870649 1.237528564 1 9.432021509 -7.184005219 4.187370324 1.106633014 1.273694897 0.44722055 0.088833279 0.204516294 6.781171864 0.028191589 0.027914158 6.55E-08 7.184005219 0.167061882 ATTRSPSWT(ph)APPVIALQNGLSEDEALQR ddPTM_K562_Paclitaxel_30min_R1 2 ATTRSPSWTAPPVIALQNGLSEDEALQR 28 1 A0A087X0D9;E9PFU9;Q8WV99 A0A087X0D9 ZFAND2B AN1-type zinc finger protein 2B 1 AT(0.155)T(0.155)RS(0.155)PS(0.22)WT(0.314)APPVIALQNGLSEDEALQR;AT(0.106)T(0.106)RS(0.156)PS(0.245)WT(0.388)APPVIALQNGLSEDEALQR 102.72 1.77E-07 27601000 670.56 630.91 705.8 815.41 602.56 590.2 738.68 507.86 667.95 849.49 TRUE FALSE 679.9499089 699.7948874 527.6120608 763.1132522 684.6388734 694.8636832 878.8406738 464.714123 732.109582 676.3634717 1.005302529 1.034643231 0.780071785 1.128259115 1.01223514 1.02735247 1.299361528 0.6870775 1.082420344 1 9.401654936 -6.309881693 24.99896161 1.030672657 0.949468071 0.069524052 0.155824109 1263.014317 651783.6314 0.043510086 0.064535988 4.90E-07 6.309881693 -0.081204585 ATVPVAAATAAEGEGS(ph)PPAVAAVAGPPAAAEVGGGVGGSSR ddPTM_K562_Paclitaxel_30min_R1 2 ATVPVAAATAAEGEGSPPAVAAVAGPPAAAEVGGGVGGSSR 41 0 O75179-4;O75179-6;O75179-2;O75179;H0YLQ3;A0A1W2PQ15;O75179-5;O75179-3 O75179-4 ANKRD17 Ankyrin repeat domain-containing protein 17 1 ATVPVAAATAAEGEGS(1)PPAVAAVAGPPAAAEVGGGVGGSSR;ATVPVAAAT(0.001)AAEGEGS(0.999)PPAVAAVAGPPAAAEVGGGVGGSSR 123.02 2.35E-36 46224000 730.56 528.98 777.64 647.14 734.23 686.01 725.18 849.96 537.33 927.01 TRUE FALSE 740.790094 586.7358253 581.3151643 605.6353369 834.2445566 807.6642414 862.7791193 777.7505927 588.9429474 738.0848532 1.003665217 0.794943593 0.787599369 0.820549743 1.130282722 1.094270175 1.168942996 1.053741436 0.79793393 1 9.527642874 -6.752075525 24.99959986 1.052623421 0.843058293 0.412685348 0.109829344 188.9430381 504437.3048 0.033721479 0.042939558 1.77E-07 6.752075525 -0.209565128 ATVT(ph)PS(ph)PVKGK ddPTM_K562_Paclitaxel_30min_R1 1 ATVTPSPVKGK 11 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 2 AT(0.311)VT(0.692)PS(0.997)PVKGK 120.53 0.02502 20813000 5698.9 4329.2 13121 6747.4 4642.5 3466.2 3483.5 6386.7 4830.9 8592.8 TRUE FALSE 5778.702183 4801.876696 9808.441272 6314.651964 5274.887098 4080.881902 4144.47594 5844.10997 5294.92953 6841.582643 0.844644066 0.701866359 1.433650923 0.922981172 0.771003929 0.596482147 0.60577737 0.854204396 0.773933431 1 12.74011438 -6.716150981 4.446827034 0.741738561 0.994597792 0.196412114 0.205672725 0.313146204 13.25161922 0.064523931 0.081913121 1.92E-07 6.716150981 0.252859231 ATVTPS(ph)PVK ddPTM_K562_Paclitaxel_30min_R1 3 ATVTPSPVK 9 0 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 AT(0.371)VT(0.092)PS(0.537)PVK;AT(0.001)VT(0.025)PS(0.974)PVK;ATVT(0.065)PS(0.935)PVK 109.39 0.0066387 198177000 21406.4 18277.8 35062.7 24385.8 18926.4 16982.9 17648.5 26666.7 13778.8 30569.8 TRUE FALSE 21706.15564 20273.43202 26210.68774 22821.80393 21504.49611 19994.57886 20997.21074 24401.19739 15102.31531 24339.65798 0.891801999 0.832938246 1.076871654 0.937638645 0.883516774 0.821481505 0.862674848 1.00252836 0.620481821 1 14.57102128 -6.860497091 4.290035141 0.860985266 0.937585124 0.083512476 0.11457899 0.574330931 18.98887371 0.035338584 0.040869755 1.38E-07 6.860497091 0.076599857 AVAEEDNGS(ph)IGEETDSSPGR ddPTM_K562_Paclitaxel_30min_R1 1 AVAEEDNGSIGEETDSSPGR 20 0 E9PNJ4;Q13586;G0XQ39 E9PNJ4 STIM1 Stromal interaction molecule 1 1 AVAEEDNGS(0.974)IGEET(0.014)DS(0.008)S(0.004)PGR 132.87 1.24E-09 17870000 771.59 696.73 947.72 1011.1 791.66 1030.9 792.34 934.78 844.61 1148.8 TRUE FALSE 782.3946406 772.8013376 708.4563647 946.2525715 899.4974949 1213.71564 942.6823787 855.3646043 925.7385643 914.6739294 0.855380935 0.844892713 0.774545269 1.03452448 0.98340782 1.32693805 1.030621239 0.935157958 1.012096808 1 9.837113721 -6.304146763 7.192583893 1.052430182 0.827051719 0.498901956 0.101439631 0.208638224 30.06848297 0.030537726 0.04590066 4.96E-07 6.304146763 -0.225378463 AVAEEDNGSIGEETDS(ph)SPGR ddPTM_K562_Paclitaxel_30min_R1 1 AVAEEDNGSIGEETDSSPGR 20 0 E9PNJ4;Q13586;G0XQ39 E9PNJ4 STIM1 Stromal interaction molecule 1 1 AVAEEDNGS(0.111)IGEET(0.055)DS(0.562)S(0.271)PGR 142.97 4.07E-13 15475000 787.43 757.85 934.92 720.11 703.52 778.4 507.22 822.63 682.91 1053.3 TRUE FALSE 798.4564494 840.5946259 698.8878831 673.9253677 799.3513347 916.4383107 603.4623471 752.7424468 748.5065568 838.6368818 0.952088403 1.002334436 0.83336173 0.803596148 0.953155474 1.092771294 0.719575254 0.897578515 0.892527592 1 9.711902469 -10.96986686 5.192409206 1.000000429 0.904215864 0.075220137 0.099641723 5.06E-07 1.00E-07 0.098616951 0.023918017 1.07E-11 10.96986686 -0.095784565 AVAS(ph)PEATVSQTDENKAR ddPTM_K562_Paclitaxel_30min_R1 2 AVASPEATVSQTDENKAR 18 1 F8W7U3;E7ESD2;Q641Q2-2;Q641Q2;A0A087WYF6;J3KP36;A0A0A0MR88;A0A096LPC5;Q9Y4E1-3;Q9Y4E1-6;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1;Q9Y4E1-5 F8W7U3 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 AVAS(0.975)PEAT(0.024)VSQTDENKAR;AVAS(0.998)PEAT(0.002)VSQTDENKAR 84.159 0.0045493 38758000 1799.09 1293.92 2891.2 1525.37 1590.13 1334.27 1550.11 2252.4 2288.4 2497.4 TRUE FALSE 1824.282811 1435.194561 2161.280802 1427.539596 1806.732627 1570.88405 1844.23528 2061.044561 2508.211045 1988.428509 0.917449535 0.721773277 1.086929096 0.71792352 0.908623377 0.790012838 0.927483825 1.036519317 1.261403683 1 10.95741298 -8.297433388 2.672309226 1.132237636 0.858484094 0.461381313 0.118063061 0.232531795 3.231041232 0.071848281 0.030771194 5.04E-09 8.297433388 -0.273753542 AVAS(ph)S(ph)RIRSRHGLIR ddPTM_K562_Paclitaxel_30min_R1 1 AVASSRIRSRHGLIR 15 3 Q9Y4C5-2;Q9Y4C5 Q9Y4C5-2 CHST2 Carbohydrate sulfotransferase 2 2 AVAS(1)S(1)RIRS(0.001)RHGLIR 116.63 0.0013584 12698000 3657 3538.5 3528.9 3259.9 3336.8 3046.8 2945.1 3341.4 3709.8 3540.3 TRUE FALSE 3708.209283 3924.845396 2637.98555 3050.824605 3791.328652 3587.107201 3503.917351 3057.527214 4066.142866 2818.784917 1.315534669 1.392389101 0.935859112 1.082319047 1.345022329 1.272572157 1.243059493 1.084696883 1.442516186 1 11.46085768 -12.18439197 2.450716266 0.358970753 1.226406617 0.179550184 0.149645026 11220728.88 3307360.086 39785688.52 0.038881731 6.54E-13 12.18439197 0.867435865 AVCS(ph)TYLQSR ddPTM_K562_Paclitaxel_30min_R1 1 AVCSTYLQSR 10 0 H7BXX9;Q5SQL3;J3KP92;Q9H2X6-2;Q86Z02-2;Q9H2X6-3;Q9H2X6;Q86Z02 H7BXX9 HIPK2;HIPK1 Homeodomain-interacting protein kinase 2;Homeodomain-interacting protein kinase 1 1 AVCS(0.345)T(0.345)Y(0.31)LQSR 91.069 0.016423 32526000 1837.7 1267.8 1989.2 1575.9 1416.5 1739.2 1300.8 1756.6 1373.5 2032.4 TRUE FALSE 1863.43347 1406.222691 1487.001858 1474.828827 1609.451282 2047.6227 1547.620009 1607.365866 1505.430812 1618.195764 1.151550085 0.869006533 0.918925813 0.911403218 0.994596153 1.265373909 0.956386145 0.993307424 0.930314394 1 10.66017044 -5.22797281 22.95244666 0.986185429 1.151551053 0.194854583 0.103012241 9596.743394 6581414.991 0.027404781 3.838068915 5.92E-06 5.22797281 0.165365624 AVCSTY(ph)LQSR ddPTM_K562_Paclitaxel_30min_R1 2 AVCSTYLQSR 10 0 H7BXX9;Q5SQL3;J3KP92;Q9H2X6-2;Q86Z02-2;Q9H2X6-3;Q9H2X6;Q86Z02 H7BXX9 HIPK2;HIPK1 Homeodomain-interacting protein kinase 2;Homeodomain-interacting protein kinase 1 1 AVCS(0.06)T(0.21)Y(0.73)LQSR;AVCS(0.001)T(0.021)Y(0.978)LQSR 142.36 0.0013311 122931000 2107.2 1496.97 2861.3 2350.6 1719.4 1735.77 1780.91 2140.27 1776.48 2633.9 TRUE FALSE 2136.707301 1660.414247 2138.929427 2199.843037 1953.61139 2043.584438 2118.828376 1958.440704 1947.118842 2097.109734 1.018881972 0.791763168 1.019941585 1.048988043 0.931573278 0.974476636 1.010356464 0.933876121 0.928477328 1 11.03418664 -5.837702417 24.99999994 0.980083496 0.905227579 0.183782906 0.063737459 50.9470522 16698.83013 0.016074288 0.033461327 1.45E-06 5.837702417 -0.074855917 AVDPEDDFQREMSFYR ddPTM_K562_Paclitaxel_30min_R1 1 AVDPEDDFQREMSFYR 16 1 H7C2Q8;Q99848 H7C2Q8 EBNA1BP2 Probable rRNA-processing protein EBP2 0 106.58 0.0113 6287800 894.96 770.08 791.54 786.26 587.72 736.1 680.04 712.22 1499.3 664 FALSE TRUE 907.4922012 854.1599386 591.7059374 735.8328028 667.7774142 866.6369996 809.07404 651.7124655 1643.314464 528.6764355 1.716536127 1.615657293 1.119221319 1.391839608 1.263111743 1.639257855 1.530376589 1.232724634 3.108355799 1 9.046241213 AVEHINK ddPTM_K562_Paclitaxel_30min_R1 1 AVEHINK 7 0 P06733;K7EM90;K7ERS8;A0A2R8Y879;A0A2R8YEM5;A0A2R8Y6I8 P06733 ENO1 Alpha-enolase;Enolase 0 116.88 0.006222 9399500 6988.1 6245.3 10461 7558 5983.5 5829.6 5413.5 8511.2 7496.4 9619.9 FALSE TRUE 7085.95496 6927.182974 7819.99117 7073.263708 6798.554001 6863.397708 6440.683365 7788.120435 8216.462715 7659.3591 0.925136799 0.904407651 1.020971999 0.923479839 0.887613952 0.896079896 0.840890639 1.01681098 1.072735017 1 12.90300796 -8.42371336 6.86387675 1.039089234 0.916699011 0.575947459 0.045655528 0.18238393 10.74404317 0.026869613 0.012692492 3.77E-09 8.42371336 -0.122390223 AVET(ph)PPLSSVNLLEGLSR ddPTM_K562_Paclitaxel_30min_R1 2 AVETPPLSSVNLLEGLSR 18 0 Q14C86-4;Q14C86-2;Q14C86-6;F8W9S7;Q14C86-3;Q14C86-5;Q14C86;H0Y4E7;H0Y7I9;C9IZ08;B4DGD8;B0QZ65;A0A0A0MQV8 Q14C86-4 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 AVET(0.999)PPLS(0.001)SVNLLEGLSR;AVET(0.983)PPLS(0.008)S(0.008)VNLLEGLS(0.001)R 101.3 0.0025464 41896000 2976.7 2891.3 3504.2 2890.6 2478.9 2564 2631.27 3656.4 3065.5 3725.7 TRUE FALSE 3018.382984 3206.981912 2619.521371 2705.209854 2816.568148 3018.6894 3130.539746 3345.765997 3359.954972 2966.400295 1.017523828 1.081102209 0.88306402 0.911950372 0.949490247 1.017627124 1.055332873 1.127887562 1.132670792 1 11.53449758 -7.715375577 2.25892967 1.095885556 0.967915085 0.411082061 0.061904521 0.300184994 3.133330021 0.031213585 0.021128148 1.93E-08 7.715375577 -0.127970471 AVFGESGGGGGSGEDEQFLGFGS(ph)DEEVRVR ddPTM_K562_Paclitaxel_30min_R1 1 AVFGESGGGGGSGEDEQFLGFGSDEEVRVR 30 1 Q03164-2;Q03164;Q03164-3;H7C5W4 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 AVFGESGGGGGS(0.001)GEDEQFLGFGS(0.999)DEEVRVR 105.52 1.08E-09 12555000 235.15 292.74 485.24 362.91 264.5 377.93 217.31 255.27 321.01 312.39 TRUE FALSE 238.4428255 324.7023432 362.7351606 339.6345769 300.529378 444.9505791 258.5434381 233.5832202 351.8444448 248.7247465 0.958661447 1.305468586 1.458379858 1.365503761 1.20828097 1.788927661 1.039476134 0.939123362 1.414593641 1 7.958406243 AVFPSIVGRPR ddPTM_K562_Paclitaxel_30min_R1 2 AVFPSIVGRPR 11 1 P60709;P63261;A0A2R8Y793;P63267;I3L3I0;A0A2R8YGF8;P68133;C9JUM1;E7EVS6;A5A3E0;I3L1U9;Q6S8J3;G5E9R0;P62736;P68032;C9JZR7;K7EM38;P63267-2;P0CG38;A6NL76;I3L4N8;C9JTX5;J3KT65;I3L3R2;F6QUT6;C9JFL5;F8WB63;B8ZZJ2;F6UVQ4;F8WCH0 P60709 ACTB;ACTG1;ACTG2;ACTA1;POTEF;POTEE;ACTA2;ACTC1;POTEI "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;POTE ankyrin domain family member F;POTE ankyrin domain family member E;Actin, aortic smooth muscle;Actin, alpha cardiac muscle 1;POTE ankyrin domain family member I" 0 ; 201.61 6.74E-05 79678000 3037 2837.3 3765 3687.8 3049.3 3042.8 3267 3783.7 3266.9 3816.5 FALSE TRUE 3079.52737 3147.086009 2814.479185 3451.281014 3464.666285 3582.397857 3886.896195 3462.251068 3580.700342 3038.695205 1.013437401 1.03567018 0.92621306 1.135777293 1.140182233 1.178926353 1.27913329 1.139387413 1.17836772 1 11.56923626 -6.394651405 5.303322776 1.164854221 0.997006158 0.514850475 0.069884059 0.169129117 6.578078381 0.019426788 0.029070318 4.03E-07 6.394651405 -0.167848063 AVFVDLEPTVIDEVR ddPTM_K562_Paclitaxel_30min_R1 2 AVFVDLEPTVIDEVR 15 0 P68363;Q71U36;Q9BQE3;F8VVB9;F8VQQ4;Q71U36-2;F5H5D3;A0A1W2PQM2;F8VS66;F8VRZ4;F8VWV9;F8VX09;P68363-2;F8VRK0 P68363 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain 0 ; 182.41 7.14E-06 73971000 6830.6 6413.3 7589.6 7394.1 6257.8 6458.2 7573.5 8325.7 7498.2 9466.9 FALSE TRUE 6926.249474 7113.525782 5673.511613 6919.875521 7110.218305 7603.471092 9010.532089 7618.379818 8218.435613 7537.540584 0.918900455 0.943746266 0.752700639 0.918054828 0.943307466 1.008746952 1.195420706 1.010724882 1.090333846 1 12.87987815 -7.191525556 2.090973704 1.075899695 0.879981239 0.596292915 0.070356177 0.221166041 1.900292885 0.027333109 0.026352856 6.43E-08 7.191525556 -0.195918456 AVGMPSPVS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 AVGMPSPVSPK 11 0 Q9UHB7 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 AVGMPS(0.262)PVS(0.738)PK;AVGMPS(0.005)PVS(0.995)PK 123.95 0.0020861 21341000 5187.5 4493 9826.7 6270.3 5146.4 4635.4 4104.4 5716.2 4868.7 7242.2 TRUE FALSE 5260.141005 4983.560934 7345.82805 5868.151023 5847.426809 5457.423106 4883.188474 5230.573131 5336.360389 5766.235665 0.91223136 0.864265914 1.273938229 1.017674504 1.014080442 0.946444686 0.846858983 0.9071036 0.925449583 1 12.49341409 -7.344092348 3.42830774 0.910706605 1.023161251 0.154409886 0.106313231 0.452810442 10.25440754 0.041431371 0.036524245 4.53E-08 7.344092348 0.112454647 AVIVS(ph)SPK ddPTM_K562_Paclitaxel_30min_R1 1 AVIVSSPK 8 0 Q14966-3;Q14966;Q14966-5 Q14966-3 ZNF638 Zinc finger protein 638 1 AVIVS(0.618)S(0.382)PK 115.71 0.0057793 34216000 3971 3303.1 6294.7 4854.9 3600.8 3229.4 3295.9 4596.6 3643.8 5378.3 TRUE FALSE 4026.606252 3663.743628 4705.525133 4543.528444 4091.289922 3802.088747 3921.279819 4206.090139 3993.803271 4282.199508 0.940312623 0.855575183 1.098857053 1.061026801 0.955417868 0.887882206 0.915716284 0.982226571 0.932652312 1 12.0641363 -6.987365349 24.87877617 0.938704159 0.989886993 0.088428553 0.067994077 552.0983314 1087124.98 0.022789527 0.025825758 1.03E-07 6.987365349 0.051182835 AVLPVTCHRDS(ph)FSR ddPTM_K562_Paclitaxel_30min_R1 1 AVLPVTCHRDSFSR 14 1 Q96N67-4;Q96N67-3;Q96N67-5;Q96N67-2;Q96N67-6;Q96N67;A0A1B0GWE0 Q96N67-4 DOCK7 Dedicator of cytokinesis protein 7 1 AVLPVT(0.002)CHRDS(0.995)FS(0.003)R 99.711 0.0050595 40169000 1036.5 822.13 850.01 1010.6 673.73 962.26 1178.9 1387.8 1219.3 1519.6 TRUE FALSE 1051.014198 911.8929337 635.4144627 945.7846393 765.5034323 1132.9033 1402.590121 1269.897728 1336.419213 1209.904686 0.868675202 0.753689893 0.525177289 0.781701774 0.632697304 0.936357478 1.159256706 1.049584932 1.104565697 1 10.24067768 -7.464127344 3.96655157 1.080885756 0.709642365 0.773124016 0.093767347 0.105750513 3.337048005 0.035446359 0.029859784 3.43E-08 7.464127344 -0.371243392 AVLPVTCHRDSFS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 AVLPVTCHRDSFSR 14 1 Q96N67-4;Q96N67-3;Q96N67-5;Q96N67-2;Q96N67-6;Q96N67;A0A1B0GWE0 Q96N67-4 DOCK7 Dedicator of cytokinesis protein 7 1 AVLPVTCHRDS(0.021)FS(0.979)R 115.26 0.0016224 46363000 947.47 898.11 974.81 1040.9 869.97 1153.2 1329.5 1426.5 1194.8 1771.8 TRUE FALSE 960.7375032 996.168687 728.7071592 974.1413329 988.4746427 1357.703828 1581.765685 1305.309921 1309.565879 1410.706187 0.681033026 0.706148946 0.516554876 0.690534529 0.700694908 0.962428492 1.121258061 0.925288294 0.928305192 1 10.46220183 -7.23113876 3.362554292 0.995398734 0.648201327 0.847722743 0.069969573 0.095251511 2.242083247 0.026096392 0.024881863 5.87E-08 7.23113876 -0.347197407 AVMKT(ph)SVLLS(ph)WEIPENY(ph)NS(ph)AMPFK ddPTM_K562_Paclitaxel_30min_R1 1 AVMKTSVLLSWEIPENYNSAMPFK 24 1 Q3KPI9;F5GWR7;P23468-7;P23468-5;P23468-4;P23468-6;P23468-2;P23468 Q3KPI9 PTPRD Protein-tyrosine-phosphatase;Receptor-type tyrosine-protein phosphatase delta 4 AVMKT(0.501)S(0.501)VLLS(0.998)WEIPENY(1)NS(1)AMPFK 44.415 0.030666 0 0 126.2 269.62 107.7 114.61 0 129.64 192.59 181.05 68.284 TRUE FALSE 0 139.9789428 201.5510964 100.792604 130.2218224 0 154.2385132 176.2282774 198.4406615 54.36768332 0 2.574671831 3.707185668 1.853906547 2.395206388 0 2.836952098 3.241415978 3.649974568 1 5.764677449 -7.944156374 24.99999548 2.875315235 1.873367911 0.106243813 1.2408609 183.8108386 82287.42449 0.524395856 0.353547568 1.14E-08 7.944156374 -1.001947324 AVNTQALS(ph)GAGILR ddPTM_K562_Paclitaxel_30min_R1 1 AVNTQALSGAGILR 14 0 O60749;O60749-2 O60749 SNX2 Sorting nexin-2 1 AVNTQALS(1)GAGILR 101.04 0.0032152 0 864.75 729.51 758.39 834.86 879.41 845.97 610.48 1003.1 721.75 869.31 TRUE FALSE 876.859168 809.1603688 566.9250649 781.3158163 999.2005305 995.9909015 726.3153931 917.8803938 791.0773124 692.1441448 1.266873634 1.169063373 0.819085257 1.128833961 1.443630692 1.438993465 1.049370133 1.326140517 1.142937231 1 9.434928712 -5.2562385 21.10134449 1.180006811 1.266873912 0.02153744 0.184870776 392.6259488 1592458.271 0.049063365 0.378195374 5.54E-06 5.2562385 0.086867102 AVPIAVADEGES(ph)ESEDDDLKPR ddPTM_K562_Paclitaxel_30min_R1 2 AVPIAVADEGESESEDDDLKPR 22 1 Q9Y2K6 Q9Y2K6 USP20 Ubiquitin carboxyl-terminal hydrolase 20 1 AVPIAVADEGES(0.999)ES(0.001)EDDDLKPR;AVPIAVADEGES(0.992)ES(0.008)EDDDLKPR 121.39 1.38E-06 130306000 4120 3066.4 6496.2 4751.8 3252.9 3118.5 2897.9 4389.2 4358.2 5337.6 TRUE FALSE 4177.692711 3401.199922 4856.153966 4447.040816 3696.000052 3671.522189 3447.761397 4016.310063 4776.824583 4249.79419 0.983034125 0.800321091 1.142679798 1.046413218 0.869689187 0.86392941 0.811277263 0.945059898 1.124013157 1 12.05317726 -8.668623133 7.350017224 1.060755122 0.929977603 0.198308303 0.104062227 0.361191184 23.94393887 0.075975508 0.028138387 2.14E-09 8.668623133 -0.130777518 AVPMAPAPAS(ph)PGSSNDSSAR ddPTM_K562_Paclitaxel_30min_R1 11 AVPMAPAPASPGSSNDSSAR 20 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 AVPMAPAPAS(0.986)PGS(0.01)S(0.003)NDS(0.001)S(0.001)AR;AVPMAPAPAS(0.715)PGS(0.217)S(0.066)NDS(0.001)S(0.002)AR;AVPMAPAPAS(0.649)PGS(0.227)S(0.067)NDS(0.028)S(0.028)AR;AVPMAPAPAS(0.997)PGS(0.002)S(0.001)NDSSAR;AVPMAPAPAS(0.939)PGS(0.035)S(0.011)NDS(0.005)S(0.011)AR;AVPMAPAPAS(0.719)PGS(0.215)S(0.064)NDS(0.001)S(0.001)AR;AVPMAPAPAS(0.97)PGS(0.022)S(0.008)NDS(0.001)SAR;AVPMAPAPAS(0.736)PGS(0.195)S(0.055)NDS(0.005)S(0.01)AR;AVPMAPAPAS(0.898)PGS(0.095)S(0.005)NDS(0.002)SAR;AVPMAPAPAS(0.943)PGS(0.037)S(0.012)NDS(0.004)S(0.004)AR;AVPMAPAPAS(0.97)PGS(0.023)S(0.007)NDSSAR 245.1 1.57E-70 1078341600 26321.36 24110.98 30509.54 26462.89 22856.63 23040.43 23185 27000.42 25099.54 30426 TRUE FALSE 26689.94025 26743.49833 22807.02929 24765.67868 25970.08997 27126.32676 27584.23272 24706.56579 27510.46296 24225.1645 1.101744438 1.103955283 0.941460244 1.022312095 1.072029458 1.119758207 1.138660285 1.019871951 1.135615115 1 14.56421884 -6.942299488 6.025145618 1.088418055 1.039970587 0.087881384 0.060153548 0.451319598 33.53415821 0.019269829 0.021824381 1.14E-07 6.942299488 -0.048447468 AVPMAPAPASPGS(ph)SNDSSAR ddPTM_K562_Paclitaxel_30min_R1 1 AVPMAPAPASPGSSNDSSAR 20 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 AVPMAPAPAS(0.007)PGS(0.71)S(0.215)NDS(0.065)S(0.003)AR 108.32 0.00057607 16342000 563.5 685.74 812.85 689.47 552.16 539.8 428.78 711.18 538.55 663.75 TRUE FALSE 571.3907385 760.6114122 607.6359643 645.2504802 627.3735401 635.5259508 510.1387666 650.76082 590.2801338 528.4773857 1.081201872 1.439250634 1.149786123 1.220961384 1.187134128 1.202560352 0.965299141 1.231388206 1.116944925 1 9.045697928 -7.552982421 24.78018461 1.095724511 1.2217348 0.26424947 0.10884207 271.42672 223425.5144 0.039925585 0.030926568 2.80E-08 7.552982421 0.126010289 AVPPGNDPVS(ph)PAMVR ddPTM_K562_Paclitaxel_30min_R1 3 AVPPGNDPVSPAMVR 15 0 A0A0A0MR08;O94966-2;O94966-7;O94966-6;O94966-5;E7ESU0;O94966-4;O94966-3;O94966;H0YB23 A0A0A0MR08 USP19 Ubiquitin carboxyl-terminal hydrolase 19;Ubiquitin carboxyl-terminal hydrolase 1 AVPPGNDPVS(1)PAMVR;AVPPGNDPVS(1)PAMVR;AVPPGNDPVS(1)PAMVR 139.49 1.88E-06 81822700 4347.7 3965.25 5513.96 4545.54 4180.67 4203.4 3556.68 4843.3 5086.21 4988.59 TRUE FALSE 4408.581214 4398.189405 4121.892602 4254.009409 4750.148033 4948.813971 4231.541463 4431.831434 5574.763196 3971.91262 1.109939124 1.1073228 1.037760141 1.071022909 1.195934676 1.245952377 1.065366202 1.115792783 1.403546284 1 11.95561817 -6.75722106 24.75904807 1.17534442 1.080229831 0.151333006 0.10362332 178.3598913 1046858.012 0.03043053 0.037886365 1.75E-07 6.75722106 -0.095114589 AVPPVS(ph)PELR ddPTM_K562_Paclitaxel_30min_R1 4 AVPPVSPELR 10 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 AVPPVS(1)PELR;AVPPVS(1)PELR;AVPPVS(1)PELR;AVPPVS(1)PELR 150.09 0.0003041 515570000 9353.3 9165.8 11638 10627.6 9338.3 9797.4 8787.2 10868.6 7144.4 11695.9 TRUE FALSE 9484.275057 10166.55304 8699.842963 9945.993303 10610.33456 11534.83133 10454.52533 9945.24459 7830.651542 9312.26916 1.01847089 1.091737456 0.934234483 1.068052602 1.139393028 1.23867031 1.122661421 1.067972201 0.840896178 1 13.18491704 -8.658415654 6.945477027 0.922259849 1.089166818 0.389734315 0.082610978 0.225503853 13.00809489 0.061894219 0.022824474 2.20E-09 8.658415654 0.166906969 AVPVES(ph)PVQKV ddPTM_K562_Paclitaxel_30min_R1 2 AVPVESPVQKV 11 1 Q8TB61-5;Q8TB61-4;Q8TB61-3;Q8TB61-2;Q8TB61 Q8TB61-5 SLC35B2 Adenosine 3-phospho 5-phosphosulfate transporter 1 1 AVPVES(1)PVQKV;AVPVES(1)PVQKV 147.33 0.0005959 179471000 6995.4 6323.5 10303.8 8006.6 6108.6 5052.3 5603.2 7877.6 7186.3 9211.4 TRUE FALSE 7093.357183 7013.921115 7702.478254 7493.092512 6940.694739 5948.254467 6666.377949 7208.34871 7876.576224 7334.111624 0.967173333 0.956342291 1.050226483 1.021676911 0.946357936 0.811039533 0.908955071 0.982852332 1.073964596 1 12.84040651 -8.558224451 7.04645526 1.035233431 0.952222359 0.225633314 0.062654678 0.343541344 50.5052734 0.048226553 0.018179295 2.77E-09 8.558224451 -0.083011072 AVQQHQHGYDS(ph)DEEVDSELGTWEHQLR ddPTM_K562_Paclitaxel_30min_R1 4 AVQQHQHGYDSDEEVDSELGTWEHQLR 27 0 Q8IWZ8 Q8IWZ8 SUGP1 SURP and G-patch domain-containing protein 1 1 AVQQHQHGY(0.039)DS(0.961)DEEVDSELGTWEHQLR;AVQQHQHGY(0.004)DS(0.996)DEEVDSELGTWEHQLR;AVQQHQHGY(0.142)DS(0.858)DEEVDS(0.001)ELGTWEHQLR;AVQQHQHGY(0.04)DS(0.96)DEEVDSELGTWEHQLR 157.59 6.48E-35 913360000 3065.58 2996.91 3309.16 3654.8 3003.26 3113.07 3371.62 4158.48 3485.65 4456.61 TRUE FALSE 3108.507578 3324.122769 2473.721631 3420.397486 3412.354858 3665.129255 4011.367294 3805.191168 3820.462257 3548.350436 0.876043005 0.936807914 0.697146935 0.96394016 0.961673577 1.032910735 1.130487917 1.072383136 1.076686851 1 11.79293278 -6.899338954 1.602502703 1.073241017 0.849923059 0.645218734 0.069649043 0.228536365 1.209611373 0.026444183 0.031826926 1.26E-07 6.899338954 -0.223317958 AVQQHQHGYDS(ph)DEEVDSELGTWEHQLRR ddPTM_K562_Paclitaxel_30min_R1 2 AVQQHQHGYDSDEEVDSELGTWEHQLRR 28 1 Q8IWZ8 Q8IWZ8 SUGP1 SURP and G-patch domain-containing protein 1 1 AVQQHQHGY(0.016)DS(0.969)DEEVDS(0.015)ELGTWEHQLRR;AVQQHQHGY(0.059)DS(0.925)DEEVDS(0.016)ELGTWEHQLRR 81.696 1.63E-06 159699000 1388.71 1429.9 1736.75 1500.39 1221.42 1461.6 1736.94 1749.77 1943.76 1779.57 TRUE FALSE 1408.156225 1586.021318 1298.285983 1404.161701 1387.798083 1720.794238 2066.515298 1601.116117 2130.466833 1416.892657 0.99383409 1.119365895 0.916290995 0.991014876 0.979465929 1.214484548 1.458484019 1.130019348 1.50361908 1 10.46851475 -7.360529136 4.266298318 1.289445296 1.0015595 0.45279329 0.143788316 0.194889906 6.150830258 0.048661879 0.042658663 4.36E-08 7.360529136 -0.287885796 AVS(ph)FHLVHR ddPTM_K562_Paclitaxel_30min_R1 3 AVSFHLVHR 9 0 Q96GA3 Q96GA3 LTV1 Protein LTV1 homolog 1 AVS(1)FHLVHR;AVS(1)FHLVHR;AVS(1)FHLVHR 96.756 0.0092687 14799100 11543.1 11151.8 12846.1 11385.3 10846 13177.4 13085 16075.8 8342.6 16955.8 TRUE FALSE 11704.73901 12369.39124 9602.943176 10655.09782 12323.40882 15514.22687 15567.81044 14710.06045 9143.944006 13500.19865 0.867004947 0.91623772 0.711318657 0.789254891 0.912831666 1.14918508 1.153154175 1.089618074 0.677319219 1 13.72069302 -7.012701029 5.90149375 1.029073336 0.82265092 0.309235998 0.13504968 0.199748716 26.25392935 0.045415093 0.048204773 9.71E-08 7.012701029 -0.206422416 AVS(ph)LDSPVSVGSSPPVK ddPTM_K562_Paclitaxel_30min_R1 2 AVSLDSPVSVGSSPPVK 17 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 AVS(0.969)LDS(0.019)PVS(0.006)VGS(0.002)S(0.003)PPVK;AVS(0.994)LDS(0.006)PVSVGSSPPVK 161.19 1.11E-07 23881600 2853.9 2303.21 4286.9 2930.8 2288.7 2118.5 1983.35 2975.1 2627.9 3970.9 TRUE FALSE 2893.863405 2554.682257 3204.619075 2742.831606 2600.459688 2494.18623 2359.680309 2722.346685 2880.321537 3161.6284 0.915307885 0.808027362 1.013597637 0.867537629 0.82250643 0.78889291 0.746349669 0.861058398 0.911024691 1 11.6264521 -4.766191807 12.57330876 0.861182521 48.03230251 0.020660698 0.082315848 209823.8509 32458.62954 0.020991981 287031053.5 1.71E-05 4.766191807 47.17111999 AVS(ph)PAPQSSSR ddPTM_K562_Paclitaxel_30min_R1 1 AVSPAPQSSSR 11 0 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 AVS(0.992)PAPQS(0.007)S(0.001)S(0.001)R 76.868 0.0306 0 1181.1 1667.2 1601.4 1311.7 1377.4 1413.5 1170.5 1364.5 1201.7 1760.2 TRUE FALSE 1197.639044 1849.230534 1197.106764 1227.573433 1565.0252 1664.164378 1392.596265 1248.577208 1317.128654 1401.470274 0.854559006 1.319493227 0.854179205 0.875918281 1.116702387 1.187441796 0.993668072 0.890905238 0.939819188 1 10.45272543 -8.003104446 24.95760368 0.937674641 1.040511854 0.073225089 0.144114468 314.2928243 2526699.928 0.061979812 0.040876053 9.93E-09 8.003104446 0.102837213 AVS(ph)PAVPFSR ddPTM_K562_Paclitaxel_30min_R1 1 AVSPAVPFSR 10 0 I3L2J0 I3L2J0 CIC 1 AVS(1)PAVPFSR 102.05 0.0086738 63186000 2936 2253.3 3156.2 2916.3 2463.4 2586.2 2413.7 2605.5 2739.5 2659.4 TRUE FALSE 2977.113058 2499.322914 2359.378275 2729.261571 2798.956786 3044.826258 2871.686975 2384.146512 3002.641215 2117.41282 1.406014467 1.180366384 1.114274105 1.288960539 1.321875809 1.437993682 1.35622442 1.125971511 1.418070764 1 11.04808686 -11.31690623 3.30739217 0.998434301 1.287497691 0.378804057 0.112794588 52363938.17 70220454.48 805723.0214 0.029993954 4.82E-12 11.31690623 0.28906339 AVS(ph)PPHLDGPPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 AVSPPHLDGPPSPR 14 0 P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;P29590-12;P29590-13;P29590-11;H3BVD2;P29590-4;H3BT57;H3BRN3;H3BUJ5 P29590-2;P29590-4 PML Protein PML 2 AVS(1)PPHLDGPPS(1)PR 107.63 0.022935 65571000 1540.1 1842.3 2431.4 2114.2 1690.5 1568 1622.9 1908.9 1480.2 1816.9 TRUE FALSE 1561.666152 2043.448544 1817.562999 1978.604675 1920.77472 1846.062784 1930.836803 1746.72703 1622.379824 1446.614783 1.079531448 1.412572696 1.256425014 1.367748138 1.327772081 1.276126033 1.334727687 1.207458303 1.12150093 1 10.49846508 -8.830363569 1.612068253 1.003765584 1.30076749 0.557419645 0.084877807 0.238294082 1.294334284 0.074590434 0.022196918 1.48E-09 8.830363569 0.297001906 AVSEGCAS(ph)EDEVEGEA ddPTM_K562_Paclitaxel_30min_R1 2 AVSEGCASEDEVEGEA 16 0 Q9BYX2-6;Q9BYX2-5;Q9BYX2-4;Q9BYX2-2;Q9BYX2 Q9BYX2-6 TBC1D2 TBC1 domain family member 2A 1 AVSEGCAS(1)EDEVEGEA;AVSEGCAS(1)EDEVEGEA 107.14 0.0014104 10669400 3172.7 3273.7 3771.1 3276 2795.2 2423.8 2689.4 3397.8 3047.9 3600.7 TRUE FALSE 3217.127589 3631.133637 2819.039165 3065.892023 3175.953563 2853.626898 3199.69961 3109.135682 3340.664413 2866.875364 1.122172114 1.266582316 0.983314169 1.069419362 1.107810128 0.995378779 1.11609303 1.084503261 1.165263219 1 11.48526347 -5.757616465 24.99999995 1.069233944 1.1943772 0.392000387 0.064184135 94.08023594 615214.4789 0.015862864 0.038772331 1.75E-06 5.757616465 0.125143256 AVSPPHLDGPPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 5 AVSPPHLDGPPSPR 14 0 P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;P29590-12;P29590-13;P29590-11;H3BVD2;P29590-4;H3BT57;H3BRN3;H3BUJ5 P29590-2;P29590-4 PML Protein PML 1 AVSPPHLDGPPS(1)PR;AVSPPHLDGPPS(1)PR;AVSPPHLDGPPS(1)PR;AVSPPHLDGPPS(1)PR;AVSPPHLDGPPS(1)PR 142.35 6.00E-06 404031000 12363.4 11786.3 14440.8 13241.2 11659.6 11270.5 11745.7 14736 13179.4 14186.3 TRUE FALSE 12536.52574 13073.16809 10795.04144 12391.9687 13247.83492 13269.16493 13974.38526 13484.08482 14445.34026 11295.12427 1.10990596 1.157416933 0.955725778 1.097107778 1.172880847 1.174769273 1.237205091 1.193796942 1.278900516 1 13.46341252 -6.760565703 3.759167457 1.190595465 1.074579028 0.238113663 0.083028487 0.282527859 8.660986001 0.02528329 0.03118382 1.74E-07 6.760565703 -0.116016436 AVSPPHLDGPPS(ph)PRS(ph)PVIGSEVFLPNSNHVASGAGEAEER ddPTM_K562_Paclitaxel_30min_R1 3 AVSPPHLDGPPSPRSPVIGSEVFLPNSNHVASGAGEAEER 40 1 P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;P29590-12;P29590-13;P29590-11;H3BVD2 P29590-2 PML Protein PML 2 AVS(0.003)PPHLDGPPS(0.713)PRS(0.682)PVIGS(0.591)EVFLPNS(0.011)NHVASGAGEAEER;AVSPPHLDGPPS(0.934)PRS(0.719)PVIGS(0.345)EVFLPNS(0.002)NHVASGAGEAEER;AVS(0.061)PPHLDGPPS(0.775)PRS(0.736)PVIGS(0.404)EVFLPNS(0.022)NHVAS(0.001)GAGEAEER 79.445 3.30E-09 80008000 2316.47 2209.22 2852.71 2643.91 2243.27 2395.53 2521.83 2785.88 2219.72 2841.58 TRUE FALSE 2348.907727 2450.430111 2132.508079 2474.341446 2548.841353 2820.343611 3000.334078 2549.202105 2432.934024 2262.464436 1.03820758 1.083080057 0.942559823 1.093648769 1.126577422 1.246580307 1.326135355 1.126736873 1.075346859 1 11.1436794 -6.691763864 2.73668747 1.172922577 1.027185257 0.267672745 0.091064298 0.325126795 4.950689422 0.029959821 0.039303428 2.03E-07 6.691763864 -0.14573732 AVSPPHLDGPPS(ph)PRS(ph)PVIGSEVFLPNSNHVASGAGEAGR ddPTM_K562_Paclitaxel_30min_R1 1 AVSPPHLDGPPSPRSPVIGSEVFLPNSNHVASGAGEAGR 39 1 P29590-4;H3BT57;H3BRN3;H3BUJ5 P29590-4 PML Protein PML 2 AVS(0.004)PPHLDGPPS(0.916)PRS(0.916)PVIGS(0.164)EVFLPNSNHVASGAGEAGR 79.991 3.72E-08 27139000 310.12 201.65 348.88 304.31 274.2 250.5 219.44 464.67 370.42 279.45 TRUE FALSE 314.4626368 223.6668289 260.8009291 284.7929186 311.5506822 294.9226578 261.0775944 425.1933831 406.0004961 222.4979366 1.413328328 1.005253497 1.172149877 1.279980044 1.400240771 1.325507384 1.173393329 1.910999219 1.824738253 1 7.797648147 -8.244170102 24.89033722 1.650901572 1.24971888 0.241816874 0.254800569 818.789496 1180130.034 0.115669598 0.066570577 5.70E-09 8.244170102 -0.401182692 AVSPPHLDGPPS(ph)PRSPVIGS(ph)EVFLPNSNHVASGAGEAEER ddPTM_K562_Paclitaxel_30min_R1 1 AVSPPHLDGPPSPRSPVIGSEVFLPNSNHVASGAGEAEER 40 1 P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;P29590-12;P29590-13;P29590-11;H3BVD2 P29590-2 PML Protein PML 2 AVS(0.012)PPHLDGPPS(0.684)PRS(0.618)PVIGS(0.685)EVFLPNSNHVASGAGEAEER 60.649 1.75E-05 45906000 735.05 872.94 963.65 563.55 883.01 693.28 811.73 926.75 856.69 1207.1 TRUE FALSE 745.3429678 968.2505413 720.3646392 527.4064254 1003.290911 816.2234739 965.75153 848.0168029 938.9789023 961.0923574 0.775516486 1.007447967 0.749526967 0.548757277 1.043906867 0.849266429 1.004847789 0.882346838 0.976991332 1 9.908531265 -6.807946451 24.9999621 0.950426895 0.785762752 0.382410024 0.116818695 153.802881 82676.10032 0.037368157 0.042371651 1.56E-07 6.807946451 -0.164664143 AVSPPHLDGPPSPRS(ph)PVIGSEVFLPNSNHVASGAGEAEER ddPTM_K562_Paclitaxel_30min_R1 2 AVSPPHLDGPPSPRSPVIGSEVFLPNSNHVASGAGEAEER 40 1 P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;P29590-12;P29590-13;P29590-11;H3BVD2 P29590-2 PML Protein PML 1 AVSPPHLDGPPS(0.227)PRS(0.743)PVIGS(0.03)EVFLPNSNHVASGAGEAEER;AVS(0.001)PPHLDGPPS(0.184)PRS(0.631)PVIGS(0.184)EVFLPNSNHVASGAGEAEER 75.821 8.89E-09 45456000 1520.32 1447.97 1833.07 1817.77 1572.06 1293.49 1524.22 1697.44 1653.95 1571.07 TRUE FALSE 1541.609171 1606.064261 1370.288807 1701.186368 1786.201187 1522.87229 1813.432788 1553.231877 1812.819288 1250.885072 1.232414716 1.283942304 1.095455401 1.359986146 1.427949879 1.217435818 1.449719746 1.241706302 1.449229293 1 10.28873353 -6.292939218 24.92374286 1.323953892 1.211937877 0.096350361 0.136328088 1242.951577 983462.5113 0.035529927 0.052706391 5.09E-07 6.292939218 -0.112016015 AVSPT(ph)EPTPR ddPTM_K562_Paclitaxel_30min_R1 2 AVSPTEPTPR 10 0 Q6PJI9-3;Q6PJI9;H3BMH3;Q6PJI9-2 Q6PJI9-3 WDR59 WD repeat-containing protein 59 1 AVS(0.077)PT(0.923)EPTPR;AVS(0.132)PT(0.868)EPTPR 155.33 0.00044849 41578000 4556.1 4490.7 5615.2 5308 4387.6 4472.1 4149.9 5391.4 4376.5 5280.3 TRUE FALSE 4619.899457 4981.009813 4197.573312 4967.568638 4985.265403 5265.164144 4937.321861 4933.366918 4796.88238 4204.171962 1.098884513 1.184777849 0.998430452 1.181580745 1.185790079 1.252366504 1.174386278 1.173445559 1.140981488 1 12.03760597 -5.230775744 21.42825381 1.151289883 1.098883917 0.020161574 0.077994195 6335.182252 4426616.246 0.019296631 1.588254991 5.88E-06 5.230775744 -0.052405966 AVSTVVVTTAPS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 AVSTVVVTTAPSPK 14 0 Q6P4R8-3;Q6P4R8;Q6P4R8-2 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 1 AVSTVVVT(0.009)T(0.248)APS(0.743)PK;AVSTVVVT(0.009)T(0.105)APS(0.885)PK 173.44 1.02E-66 8337300 6787.5 5965.1 10711 7182.2 5878.6 5483.4 4621.6 7511.5 6480.6 9336.4 TRUE FALSE 6882.545941 6616.389791 8006.875578 6721.565838 6679.364846 6455.803999 5498.524474 6873.35119 7103.090586 7433.636555 0.925865273 0.890060974 1.077114212 0.904209641 0.898532609 0.868458385 0.739681639 0.924628362 0.955533746 1 12.85985244 -6.502147331 24.59818711 0.886182477 0.962542184 0.119426671 0.078036369 1182.972536 1403617.759 0.02260424 0.033085509 3.15E-07 6.502147331 0.076359708 AVT(ph)PENHESMTSIFPSAAVGLK ddPTM_K562_Paclitaxel_30min_R1 2 AVTPENHESMTSIFPSAAVGLK 22 0 H0YA93;Q86UW6-2;Q86UW6 H0YA93 N4BP2 NEDD4-binding protein 2 1 AVT(0.992)PENHES(0.007)MTSIFPSAAVGLK;AVT(0.975)PENHES(0.025)MTSIFPSAAVGLK 88.765 0.00053881 45287000 6008.6 5036.8 9186.2 6621 5215.7 4300 4424.4 5987.2 5538.9 7559.6 TRUE FALSE 6092.738938 5586.734857 6867.030197 6196.358695 5926.166643 5062.544625 5263.906803 5478.549989 6070.936093 6018.94937 1.012259543 0.928191037 1.140901804 1.029475131 0.984584896 0.841101048 0.874555754 0.910216992 1.008637176 1 12.55529597 -7.025761081 6.632593756 0.917204955 1.026391945 0.326612188 0.067714909 0.208993421 34.72553857 0.022721376 0.023577694 9.42E-08 7.025761081 0.10918699 AVTEQGAELSNEER ddPTM_K562_Paclitaxel_30min_R1 2 AVTEQGAELSNEER 14 0 E9PG15;P27348 E9PG15 YWHAQ 14-3-3 protein theta 0 ; 207.66 4.11E-12 23447000 1267.78 1411.56 1545.2 1149.31 1156.78 1073.07 1212.35 1463.57 1399.64 1556.94 FALSE TRUE 1285.532831 1565.678894 1155.095149 1075.598401 1314.35302 1263.363898 1442.387084 1339.230593 1534.081676 1239.634773 1.037025468 1.263016275 0.931802797 0.867673628 1.060274404 1.019142029 1.163558102 1.080342874 1.23752714 1 10.27569941 -7.75198608 24.88517548 1.127052269 1.029980483 0.136570088 0.111010949 387.3289745 1019619.721 0.044700682 0.034142004 1.77E-08 7.75198608 -0.097071787 AVTEQGHELSNEER ddPTM_K562_Paclitaxel_30min_R1 1 AVTEQGHELSNEER 14 0 P31946-2;P31946;Q4VY20;A0A0J9YWZ2;Q4VY19;A0A0J9YWE8 P31946-2 YWHAB "14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed" 0 181.67 1.81E-05 7604000 659.58 581.76 717.77 700.27 634.72 659.14 572.07 734.13 582.37 687 FALSE TRUE 668.816155 645.2785242 536.5600862 655.3578165 721.1796099 776.0292242 680.6172961 671.7610742 638.3092406 546.9890229 1.222723175 1.179691908 0.98093392 1.198118772 1.318453533 1.418729064 1.244297907 1.228107048 1.166950732 1 9.095368071 -4.915314531 16.01567422 1.205791249 1.607553358 0 0.124569477 43715319.58 116884465 0.033131598 611602332.2 1.22E-05 4.915314531 0.401762108 AVTGQTTQVS(ph)PPVIAGR ddPTM_K562_Paclitaxel_30min_R1 2 AVTGQTTQVSPPVIAGR 17 0 Q6MZP7-3;Q6MZP7 Q6MZP7-3 LIN54 Protein lin-54 homolog 1 AVT(0.001)GQT(0.001)T(0.029)QVS(0.968)PPVIAGR;AVTGQTTQVS(1)PPVIAGR 271.82 1.12E-112 39372000 2149.1 1855.45 2362.25 2316.57 2171.77 1857.18 1820.77 2112.96 2545.1 2057.42 TRUE FALSE 2179.194031 2058.034306 1765.870772 2167.995569 2467.601842 2186.524797 2166.251602 1933.450859 2789.568227 1638.116675 1.330304529 1.256341711 1.077988399 1.323468348 1.506365133 1.334779647 1.322403731 1.180288858 1.702911807 1 10.6778224 -6.501661923 24.19792939 1.354888784 1.220975176 0.076764929 0.183195214 1201.378012 1370178.935 0.049308282 0.072237873 3.15E-07 6.501661923 -0.133913607 AVTIANS(ph)PSKPSEKDSVVSLESQK ddPTM_K562_Paclitaxel_30min_R1 2 AVTIANSPSKPSEKDSVVSLESQK 24 2 Q8NEF9 Q8NEF9 SRFBP1 Serum response factor-binding protein 1 1 AVT(0.002)IANS(0.454)PS(0.454)KPS(0.087)EKDS(0.002)VVSLESQK;AVT(0.005)IANS(0.781)PS(0.115)KPS(0.075)EKDS(0.023)VVS(0.002)LESQK 65.901 0.0073989 52635000 2019.02 1193.37 4832.9 1851.85 1205.8 1011.76 916.47 1856.88 1490.03 2562.8 TRUE FALSE 2047.292509 1323.666172 3612.774622 1733.08063 1370.050374 1191.18143 1090.365398 1699.126454 1633.154039 2040.499953 1.003328868 0.648696987 1.770534038 0.849341176 0.67142877 0.583769398 0.534361883 0.83270105 0.800369555 1 10.99470696 -6.510029677 24.77133495 0.7154315 1.128020982 0.284652138 0.284978218 678.9289159 1308887.445 0.081692516 0.11483673 3.09E-07 6.510029677 0.412589482 AVTQLGSMLFT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 AVTQLGSMLFTR 12 0 Q9HD40-3;Q9HD40 Q9HD40-3 SEPSECS O-phosphoseryl-tRNA(Sec) selenium transferase 1 AVTQLGSMLFT(1)R 57.164 0.029128 0 454.57 638.98 640.5 714.43 404.79 525.69 442.28 747.96 606.37 907.44 TRUE FALSE 460.9353825 708.7459973 478.7978534 668.6096575 459.9292512 618.9137404 526.2003211 684.4161294 664.6145478 722.5032299 0.637969996 0.980958933 0.662693028 0.925407154 0.636577433 0.856624185 0.728301687 0.947284526 0.919877615 1 9.496860227 -8.274643733 23.39476606 0.950185873 0.782609925 0.345786458 0.113223493 389.0473483 689285.4282 0.055646274 0.027031973 5.31E-09 8.274643733 -0.167575948 AVTSGLPGDTALLLPPS(ph)PRPSPR ddPTM_K562_Paclitaxel_30min_R1 2 AVTSGLPGDTALLLPPSPRPSPR 23 1 H7BYY2;Q6W2J9-4;Q6W2J9-2;Q6W2J9;Q6W2J9-3 H7BYY2 BCOR BCL-6 corepressor 1 AVTSGLPGDTALLLPPS(0.907)PRPS(0.093)PR;AVTSGLPGDTALLLPPS(0.926)PRPS(0.074)PR 103.14 5.80E-05 83344000 4357.8 3351.5 5863.2 4683.4 3262.5 3973.5 3899.6 4893.3 4371.1 5675.6 TRUE FALSE 4418.822645 3717.428104 4382.962645 4383.027686 3706.907735 4678.144434 4639.528743 4477.583622 4790.963686 4518.909605 0.977851524 0.822638298 0.969915982 0.969930375 0.820310221 1.035237445 1.026692089 0.990854877 1.060203479 1 12.14175898 -7.294454755 24.93788558 1.022281935 0.913579087 0.499492601 0.055280247 534.8039365 403957.8545 0.018848987 0.016624272 5.08E-08 7.294454755 -0.108702848 AVTTVTQSTPVPGPSVPPPEELQVS(ph)PGPR ddPTM_K562_Paclitaxel_30min_R1 4 AVTTVTQSTPVPGPSVPPPEELQVSPGPR 29 0 P51610-2;P51610;H7C1C4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 AVTTVTQSTPVPGPSVPPPEELQVS(1)PGPR;AVTTVTQSTPVPGPSVPPPEELQVS(1)PGPR;AVTTVTQSTPVPGPSVPPPEELQVS(1)PGPR;AVTTVTQSTPVPGPSVPPPEELQVS(1)PGPR 204.81 2.04E-50 478568000 5914.6 5716.6 6473.8 6464.6 5689.2 5279.1 5803.9 6559.8 5808.1 6850 TRUE FALSE 5997.422648 6340.75772 4839.409123 6049.98949 6464.165359 6215.274263 6905.159727 6002.504045 6365.993956 5453.96624 1.099644256 1.162595704 0.88731923 1.109282534 1.185222841 1.13958796 1.266080394 1.100575944 1.167222839 1 12.41309005 -6.517932715 24.77787528 1.153491814 1.05065626 0.169598501 0.090572611 294.8703064 1477201.983 0.02590872 0.034435919 3.03E-07 6.517932715 -0.102835555 AVVIVDDR ddPTM_K562_Paclitaxel_30min_R1 1 AVVIVDDR 8 0 P23246;P23246-2;C9IZL7;H7C367;Q15233-2;Q15233 P23246;Q15233-2 SFPQ;NONO "Splicing factor, proline- and glutamine-rich;Non-POU domain-containing octamer-binding protein" 0 125.25 0.015144 22828000 3247.4 3053.2 3836.4 3515.1 3240 2917.5 2761.5 3859.7 2843.7 3472.9 FALSE TRUE 3292.873619 3386.558701 2867.853372 3289.657219 3681.342854 3434.877661 3285.480209 3531.794394 3116.850091 2765.121074 1.190860556 1.224741561 1.037152911 1.189697352 1.331349607 1.242216008 1.188186745 1.277265732 1.127202031 1 11.43312694 -9.028072598 6.91562995 1.000013748 1.208387682 0.450920332 0.071882403 0.220765841 47.84018734 0.073775305 0.019107403 9.37E-10 9.028072598 0.208373934 AVVQS(ph)PQVTEVL ddPTM_K562_Paclitaxel_30min_R1 1 AVVQSPQVTEVL 12 0 Q3KQU3-2;Q3KQU3-4;Q3KQU3;Q3KQU3-3 Q3KQU3-2 MAP7D1 MAP7 domain-containing protein 1 1 AVVQS(1)PQVTEVL 83.617 0.024514 0 1072.5 998.93 1152 1097 1044.3 815.94 789.19 979.87 801.05 1068.3 TRUE FALSE 1087.518309 1107.996556 861.1633522 1026.64333 1186.55134 960.6355026 938.9346827 896.6239273 877.9944317 850.5798736 1.278561065 1.302636695 1.012442663 1.206992267 1.394991084 1.129388941 1.10387597 1.054132546 1.032230434 1 9.732302908 -7.725432236 2.38145147 1.04125401 1.229082123 0.473965931 0.094594661 0.298181583 3.457725888 0.04663609 0.031617785 1.88E-08 7.725432236 0.187828112 AVVT(ph)AAT(ph)MSNKFT(ph)QK ddPTM_K562_Paclitaxel_30min_R1 1 AVVTAATMSNKFTQK 15 1 B7ZLU9;Q14833-3;Q14833-2;Q14833-4;Q14833-5;Q14833 B7ZLU9 GRM4 Metabotropic glutamate receptor 4 3 AVVT(0.962)AAT(0.962)MS(0.102)NKFT(0.973)QK 40.715 0.030702 0 232.3 164.93 256.69 225.66 136.37 242.33 218.78 176.55 0 261.98 TRUE FALSE 235.5529167 182.9376152 191.8854348 211.1871776 154.9459028 285.303823 260.2923629 161.5509755 0 208.5883322 1.129271778 0.877027076 0.919924105 1.012459208 0.742831112 1.36778419 1.247875949 0.774496703 0 1 7.70451465 -8.526368878 24.99559651 0.462415964 1.029782827 0.373910266 0.281527504 103.1212829 738493.978 0.179868185 0.068709799 2.98E-09 8.526368878 0.567366863 AWALLQLDGT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 AWALLQLDGTPR 12 0 A0A499FJE4;Q96MK2 A0A499FJE4 FAM65C Protein FAM65C 1 AWALLQLDGT(1)PR 137.09 0.00054744 4605700 1311.9 1188 881.57 1120.3 971.2 975.18 1515.4 1929.7 1596 2432.8 TRUE FALSE 1330.270648 1317.709858 659.0067504 1048.448972 1103.493883 1148.114481 1802.939239 1765.75994 1749.302931 1936.994025 0.686770651 0.680285969 0.340221365 0.541276307 0.569694004 0.592730006 0.93079236 0.911598032 0.903101873 1 10.91960379 -7.742021977 5.148965273 0.931446668 0.559366903 0.791679079 0.09247753 0.086625302 6.209036337 0.039899404 0.029118968 1.81E-08 7.742021977 -0.372079765 AWLDEDS(ph)NLSPSPLRDLSGGLGGQEEEEEQR ddPTM_K562_Paclitaxel_30min_R1 2 AWLDEDSNLSPSPLRDLSGGLGGQEEEEEQR 31 1 Q9C086;B8ZZ93;B8ZZH7;F8WCL7;J3KQ70 Q9C086 INO80B;INO80B-WBP1 INO80 complex subunit B 1 AWLDEDS(0.489)NLS(0.296)PS(0.214)PLRDLS(0.001)GGLGGQEEEEEQR;AWLDEDS(0.597)NLS(0.159)PS(0.12)PLRDLS(0.123)GGLGGQEEEEEQR 90.166 9.32E-10 24275000 476.94 454.88 702.52 675.48 651.68 512.96 552.1 566.55 433.379 862.04 TRUE FALSE 483.6186315 504.5453367 525.1601373 632.1577361 740.449849 603.9262537 656.8580928 518.4180412 475.0069893 686.3557748 0.704617997 0.735107586 0.765142739 0.921035066 1.078813461 0.879902633 0.957022753 0.755319705 0.69207109 1 9.422812786 -6.140365447 4.055739378 0.896506171 0.726076167 0.337875005 0.105368595 0.299726084 8.386875314 0.031696572 0.058042013 7.24E-07 6.140365447 -0.170430004 AWLDEDSNLS(ph)PSPLR ddPTM_K562_Paclitaxel_30min_R1 1 AWLDEDSNLSPSPLR 15 0 Q9C086;B8ZZ93;B8ZZH7;F8WCL7;J3KQ70 Q9C086 INO80B;INO80B-WBP1 INO80 complex subunit B 1 AWLDEDS(0.03)NLS(0.934)PS(0.036)PLR 95.854 0.0079144 7881900 1832.1 1675.8 1918.8 2065.7 1640.4 1555 1517.7 2114 1584.6 2151.6 TRUE FALSE 1857.755053 1858.769511 1434.375209 1933.215248 1863.850252 1830.757417 1805.675652 1934.402505 1736.80791 1713.102739 1.084438785 1.085030961 0.837296664 1.128487629 1.087996773 1.068679289 1.054038156 1.129180674 1.013837565 1 10.74239596 AY(ph)GT(ph)GFVGCLRDVVVGR ddPTM_K562_Paclitaxel_30min_R1 1 AYGTGFVGCLRDVVVGR 17 1 A0A087X208;A0A494C0G5;A0A494C1I6;O00468-2;O00468-6;O00468-3;O00468-5;O00468-4;O00468-7;O00468 A0A087X208 AGRN Agrin;Agrin N-terminal 110 kDa subunit;Agrin C-terminal 110 kDa subunit;Agrin C-terminal 90 kDa fragment;Agrin C-terminal 22 kDa fragment 2 AY(1)GT(1)GFVGCLRDVVVGR 83.823 0.012701 231190000 2436.3 2467.7 2204.4 2358.1 2445.9 2332.3 2510.1 2391.8 2358.4 2329.2 TRUE FALSE 2470.415717 2737.131831 1647.871956 2206.86202 2779.072989 2745.900658 2986.378371 2188.601661 2584.934858 1854.507761 1.332113981 1.475934417 0.888576468 1.189998805 1.498550207 1.480662802 1.610334793 1.180152333 1.393865753 1 10.85682059 -4.095131778 18.07372373 1.318743682 1.349975402 0 0.222829251 0 0 0.052275574 0 8.03E-05 4.095131778 0.03123172 AY(ph)PS(ph)MMGLAAWY(ph)ADLLLRIR ddPTM_K562_Paclitaxel_30min_R1 1 AYPSMMGLAAWYADLLLRIR 20 1 Q9UFH2;K7ELN3 Q9UFH2 DNAH17 "Dynein heavy chain 17, axonemal" 3 AY(1)PS(1)MMGLAAWY(1)ADLLLRIR 41.988 0.026876 24453000 0 0 116.35 0 0 125.7 48.407 0 0 0 TRUE FALSE 0 0 86.9760035 0 0 147.9911301 57.59197555 0 0 0 0 AY(ph)RSMTRTGFHGS(ph)VT(ph)CMTFY ddPTM_K562_Paclitaxel_30min_R1 1 AYRSMTRTGFHGSVTCMTFY 20 2 F8W7J0 F8W7J0 IDNK 3 AY(0.534)RS(0.199)MT(0.251)RT(0.031)GFHGS(0.983)VT(0.795)CMT(0.144)FY(0.062) 56.29 0.013043 16085000 1163.7 1277 1342.1 1492.2 1107.3 1007 1176.4 1610 1082.8 1593.1 TRUE FALSE 1179.99539 1416.427179 1003.270256 1396.496971 1258.133007 1185.577311 1399.615759 1473.220451 1186.807778 1268.425346 0.930283674 1.116681548 0.790957276 1.100968989 0.991885735 0.934684343 1.103427777 1.161456175 0.935654418 1 10.3088229 -7.764481446 24.99824121 1.063589273 0.981676284 0.100794139 0.102645293 170.428816 1400478.606 0.039945745 0.028242242 1.72E-08 7.764481446 -0.081912989 AYLQSITPQGYS(ph)DSEERESMPR ddPTM_K562_Paclitaxel_30min_R1 3 AYLQSITPQGYSDSEERESMPR 22 1 A0A1B0GWI0;A0A1B0GVV8;A0JP08;A0A1B0GV02;O60315-2;O60315 A0A1B0GWI0 ZEB2 Zinc finger E-box-binding homeobox 2 1 AYLQSIT(0.007)PQGY(0.431)S(0.56)DS(0.001)EERESMPR;AYLQSITPQGY(0.006)S(0.642)DS(0.351)EERESMPR;AYLQSITPQGY(0.002)S(0.954)DS(0.044)EERESMPR 120.66 2.59E-06 171375000 2538.98 2263.93 2876.19 2797.21 2633.49 2188.65 2434.06 3032.4 2632.92 3095.43 TRUE FALSE 2574.533553 2511.113534 2150.060262 2617.80947 2992.215923 2576.776347 2895.910178 2774.778692 2885.82373 2464.579667 1.044613647 1.018881056 0.87238416 1.062172794 1.214087726 1.045523657 1.175011795 1.125862852 1.170919232 1 11.2671259 -6.519042027 24.91202355 1.128039765 0.980089542 0.440921723 0.072059483 127.5594398 828254.0087 0.020078656 0.026532156 3.03E-07 6.519042027 -0.147950223 AYLQSITPQGYSDS(ph)EERESMPR ddPTM_K562_Paclitaxel_30min_R1 1 AYLQSITPQGYSDSEERESMPR 22 1 A0A1B0GWI0;A0A1B0GVV8;A0JP08;A0A1B0GV02;O60315-2;O60315 A0A1B0GWI0 ZEB2 Zinc finger E-box-binding homeobox 2 1 AYLQSIT(0.001)PQGY(0.084)S(0.35)DS(0.562)EERES(0.004)MPR 98.292 0.00027077 36632000 646.85 806.11 1122.2 987.5 811.26 833.16 700.96 889.63 834.87 1130.1 TRUE FALSE 655.9078957 894.1238159 838.8867308 924.1661699 921.7673467 980.9092279 833.9635007 814.0503786 915.0629938 899.7849997 0.728960692 0.993708293 0.932319089 1.027096662 1.024430666 1.090159569 0.926847526 0.904716548 1.016979605 1 9.813436506 -5.260832733 24.81576027 0.989198253 0.728960603 0.687315836 0.052952463 27.94097785 1142670.83 0.014033279 0.081088267 5.48E-06 5.260832733 -0.26023765 AYNLNRTPS(ph)TVTLNNNSAPANR ddPTM_K562_Paclitaxel_30min_R1 2 AYNLNRTPSTVTLNNNSAPANR 22 1 Q9ULH0-2;Q9ULH0-4;Q9ULH0;Q9ULH0-5 Q9ULH0-2 KIDINS220 Kinase D-interacting substrate of 220 kDa 1 AYNLNRT(0.005)PS(0.952)T(0.039)VT(0.004)LNNNSAPANR;AY(0.002)NLNRT(0.134)PS(0.799)T(0.055)VT(0.009)LNNNS(0.001)APANR 93.229 0.0003036 35039000 534.69 570.58 504.79 566.59 482.41 533.54 587.7 625.45 1441.99 742.71 TRUE FALSE 542.1773097 632.877854 377.3495213 530.2514534 548.1224093 628.1558277 699.213007 572.3141186 1580.499582 591.3452943 0.916854019 1.070234024 0.638120443 0.896686688 0.926907535 1.062248797 1.182410706 0.967817152 2.672718626 1 9.207856975 -8.64916787 15.52389775 1.836195777 0.958046866 0.438570586 0.397689176 0.646806614 85.19981541 0.24456979 0.092421283 2.24E-09 8.64916787 -0.878148911 AYS(ph)FCGTVEYMAPEVVNR ddPTM_K562_Paclitaxel_30min_R1 2 AYSFCGTVEYMAPEVVNR 18 0 B4DG22;B1AXG1;B7ZB17;P51812;Q9UK32-2;Q9UK32;E9PGT3;Q15418-3;Q15418-4;Q15418;Q15418-2 B4DG22;E9PGT3 RPS6KA3;RPS6KA6;RPS6KA1 Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6;Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1 1 AYS(0.986)FCGT(0.013)VEYMAPEVVNR;AYS(0.874)FCGT(0.126)VEYMAPEVVNR 209.23 1.78E-19 139710000 1369.43 1228.85 1649.15 915.89 1091.5 1020.04 1310.01 1279.61 1391.44 2092 TRUE FALSE 1388.606245 1363.019999 1232.801686 857.1489148 1240.180779 1200.929772 1558.577559 1170.899143 1525.094029 1665.649252 0.833672662 0.818311537 0.740132825 0.514603488 0.744562985 0.720997996 0.935717743 0.702968613 0.915615354 1 10.70186892 -8.918973528 4.063324809 0.998627438 0.750479283 0.403096848 0.102636367 0.206217594 6.161300421 0.10441486 0.027511466 1.21E-09 8.918973528 -0.248148155 AYS(ph)FCGTVEYMAPEVVNRR ddPTM_K562_Paclitaxel_30min_R1 3 AYSFCGTVEYMAPEVVNRR 19 1 B4DG22;B1AXG1;B7ZB17;P51812;Q9UK32-2;Q9UK32 B4DG22 RPS6KA3;RPS6KA6 Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6 1 AY(0.007)S(0.938)FCGT(0.055)VEYMAPEVVNRR;AYS(0.995)FCGT(0.005)VEYMAPEVVNRR;AY(0.002)S(0.981)FCGT(0.017)VEYMAPEVVNRR 95.307 0.0007163 44165000 1653.51 1479.93 2003.83 1523.67 1363.66 1220.03 1634.68 1861.06 1731.77 2562.43 TRUE FALSE 1676.664242 1641.513762 1497.938333 1425.948626 1549.413579 1436.38519 1944.851996 1702.951337 1898.114246 2040.205359 0.821811507 0.804582614 0.734209587 0.698924066 0.75944001 0.704039514 0.95326286 0.834696041 0.930354504 1 10.99449866 -7.763899668 24.99996605 0.91580304 0.753008093 0.720961961 0.0532861 38.47289887 390929.0015 0.022009653 0.015625785 1.72E-08 7.763899668 -0.162794946 AYS(ph)GSDLPSSSSGGANGTAGGGGGAR ddPTM_K562_Paclitaxel_30min_R1 2 AYSGSDLPSSSSGGANGTAGGGGGAR 26 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 AYS(0.934)GS(0.066)DLPSSSSGGANGTAGGGGGAR;AYS(0.935)GS(0.065)DLPSSSSGGANGTAGGGGGAR 298.45 2.09E-204 33188000 2726.9 2935.9 4323.7 3236.2 2553.82 2838.87 2942.8 2769.7 2749.36 4110.2 TRUE FALSE 2765.085013 3256.451491 3232.12846 3028.644617 2901.693521 3342.303735 3501.180938 2534.396697 3013.448312 3272.538984 0.844935699 0.995084094 0.98765163 0.925472433 0.886679589 1.021318234 1.069866839 0.774443547 0.920828851 1 11.67619466 -11.1809984 0.005272277 1.292106468 0.609540636 0.011302802 0.084478324 358980.8763 338.4677127 22649.0311 21184.7687 6.59E-12 11.1809984 -0.682565832 AYS(ph)PEYR ddPTM_K562_Paclitaxel_30min_R1 2 AYSPEYR 7 0 Q9UDY2-7;Q9UDY2-4;A0A3B3IU51;A0A1B0GTW1;A0A3B3ITE1;A0A2R8YDH4;Q9UDY2-2;Q9UDY2-6;Q9UDY2-3;Q9UDY2;Q9UDY2-5;A0A3B3ISF1;A0A3B3ISZ5;A0A3B3IRI3;A0A3B3IRV6;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 AYS(0.999)PEY(0.001)R;AYS(1)PEYR 98.582 0.011445 213100000 7931.1 7721 10261.9 8919 7528.1 6777.4 7381.9 8733.1 5686.8 9697.6 TRUE FALSE 8042.15987 8564.004891 7671.156427 8346.97526 8553.554672 7979.276731 8782.576989 7991.168645 6233.042549 7721.223797 1.041565441 1.109151233 0.993515617 1.081043042 1.107797792 1.033421248 1.137459193 1.034961407 0.807260962 1 12.91461381 -8.600174648 7.32752739 0.905833551 1.071730933 0.562694991 0.058504932 0.151736695 12.05118949 0.036930056 0.013736884 2.51E-09 8.600174648 0.165897383 AYS(ph)PEYRR ddPTM_K562_Paclitaxel_30min_R1 1 AYSPEYRR 8 1 Q9UDY2-7;Q9UDY2-4;A0A3B3IU51;A0A1B0GTW1;A0A3B3ITE1;A0A2R8YDH4;Q9UDY2-2;Q9UDY2-6;Q9UDY2-3;Q9UDY2;Q9UDY2-5;A0A3B3ISF1;A0A3B3ISZ5;A0A3B3IRI3;A0A3B3IRV6;A0A3B3IT83 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 AYS(1)PEYRR 82.831 0.016576 55709000 1687.2 1925.5 2283 2007.6 1661.2 1651.1 1191.8 1757.2 1786.5 2009.5 TRUE FALSE 1710.826005 2135.732602 1706.628414 1878.841522 1887.483564 1943.899402 1417.937828 1607.914892 1958.101307 1599.962797 1.069291116 1.334863914 1.066667561 1.174303256 1.179704658 1.214965377 0.886231749 1.004970175 1.223841774 1 10.64382264 -7.730725781 24.99957708 1.029174893 1.176133084 0.313117542 0.104824851 240.5907111 195830.4869 0.039185073 0.030349002 1.86E-08 7.730725781 0.14695819 AYSGS(ph)DLPSSSSGGANGTAGGGGGAR ddPTM_K562_Paclitaxel_30min_R1 2 AYSGSDLPSSSSGGANGTAGGGGGAR 26 0 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 AYS(0.248)GS(0.746)DLPS(0.006)SSSGGANGTAGGGGGAR;AYS(0.136)GS(0.862)DLPS(0.002)SSSGGANGTAGGGGGAR 338.67 0 77106000 3701.2 2963.2 4538.7 3942.8 3428.5 2752 3055.5 3797.8 2838.5 4135.4 TRUE FALSE 3753.028219 3286.732197 3392.849051 3689.926455 3895.519745 3240.02856 3635.265174 3475.153185 3111.150608 3292.60321 1.139836166 0.998216908 1.03044577 1.120671463 1.183112418 0.984032497 1.104070227 1.055442446 0.944890838 1 11.68501295 -8.649900359 5.306619425 0.973794627 1.0769477 0.328437625 0.06040471 0.246705143 10.20600764 0.044140246 0.015650117 2.24E-09 8.649900359 0.103153073 AYSS(ph)PSTTPEAR ddPTM_K562_Paclitaxel_30min_R1 1 AYSSPSTTPEAR 12 0 G3V2R1;Q9UPU9-2;Q9UPU9-3;Q9UPU9 G3V2R1 SAMD4A Protein Smaug homolog 1 1 AYS(0.161)S(0.838)PS(0.001)T(0.001)TPEAR 146.16 0.00012644 13228000 2184.1 2155.9 2745.9 2526.6 2191 2409.2 1762.1 2535.4 2422.3 2816.9 TRUE FALSE 2214.684139 2391.288453 2052.663584 2364.555185 2489.451294 2836.437793 2096.449276 2320.001945 2654.972738 2242.814234 0.987457679 1.066199963 0.915217834 1.054280443 1.109967672 1.264677988 0.93474049 1.034415561 1.183768454 1 11.13109442 -6.512678236 21.38217059 1.090036093 0.995193683 0.181712737 0.093004062 129.2350907 270900.4561 0.027275491 0.037608387 3.07E-07 6.512678236 -0.09484241 AYT(ph)PPPPLGPHPNLGK ddPTM_K562_Paclitaxel_30min_R1 1 AYTPPPPLGPHPNLGK 16 0 J3QS41;P42694 J3QS41 HELZ Probable helicase with zinc finger domain 1 AY(0.104)T(0.896)PPPPLGPHPNLGK 77.505 0.027406 12008000 3013.4 2374 5048.4 3422.2 2476.6 2216.8 2045.2 3163.1 3082.4 4001.3 TRUE FALSE 3055.596897 2633.201348 3773.868982 3202.715409 2813.954849 2609.918355 2433.266023 2894.374912 3378.478293 3185.832864 0.959120277 0.826534681 1.184578458 1.005299257 0.883271336 0.81922639 0.763777049 0.908514362 1.060469409 1 11.63745487 -6.762477657 24.98085666 0.889864661 0.995550809 0.117289058 0.113240907 54.22158994 1304580.531 0.03612401 0.04333305 1.73E-07 6.762477657 0.105686148 AYYEFREEAYHSR ddPTM_K562_Paclitaxel_30min_R1 2 AYYEFREEAYHSR 13 1 H3BQZ7;Q1KMD3 H3BQZ7 HNRNPUL2-BSCL2;HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 0 ; 132.56 0.00031542 48834000 2679.1 2953.9 3135.8 2912.6 2524.2 3152.2 2500.2 3016.3 4662.1 3133.7 FALSE TRUE 2716.615666 3276.416791 2344.128507 2725.798872 2868.038775 3711.198411 2974.599898 2760.046488 5109.915536 2495.05022 1.088801998 1.313166671 0.939511553 1.092482568 1.149491402 1.487424334 1.192200411 1.106208791 2.048021116 1 11.28485314 -7.133038934 6.117419752 1.361754921 1.112447547 0.167208774 0.279839365 0.458411412 20.9069301 0.089964239 0.090185995 7.36E-08 7.133038934 -0.249307374 CAAPRPPSS(ph)SPEQR ddPTM_K562_Paclitaxel_30min_R1 3 CAAPRPPSSSPEQR 14 1 H0YEN2;E9PQP7;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6;Q5H9R7-2;Q5H9R7;Q5H9R7-5 H0YEN2 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 CAAPRPPS(0.02)S(0.853)S(0.127)PEQR;CAAPRPPS(0.007)S(0.777)S(0.217)PEQR;CAAPRPPS(0.176)S(0.713)S(0.111)PEQR 125.39 0.00031285 181721000 1879.81 1663.88 2163.29 1955.48 1789.16 1939.07 1560.12 2163.92 1937 2427.55 TRUE FALSE 1906.13314 1845.548045 1617.140684 1830.064265 2032.873883 2282.936839 1856.144626 1980.081489 2123.057505 1932.813977 0.986195858 0.95485032 0.836676837 0.946839316 1.05176903 1.181146693 0.960332783 1.024455282 1.098428265 1 10.91648708 -6.72560039 4.859494143 1.056163922 0.923907762 0.451059714 0.065818807 0.179908564 9.909692174 0.020559688 0.025965279 1.88E-07 6.72560039 -0.13225616 CAPPS(ph)PPPPVEPATQEEAERR ddPTM_K562_Paclitaxel_30min_R1 1 CAPPSPPPPVEPATQEEAERR 21 1 Q6IQ19-3;Q6IQ19-4;Q6IQ19 Q6IQ19-3 CCSAP "Centriole, cilia and spindle-associated protein" 1 CAPPS(0.936)PPPPVEPAT(0.064)QEEAERR 83.871 0.00095622 9522600 1891.7 1757.8 2526.4 2101.9 1686.3 1522 1567.7 1828.5 1539.9 2136.9 TRUE FALSE 1918.189636 1949.722548 1888.579074 1967.093542 1916.002609 1791.90533 1865.162891 1673.157512 1687.814275 1701.398607 1.127419306 1.14595283 1.110015646 1.156162661 1.126133877 1.053195484 1.096252744 0.983401247 0.992015785 1 10.73250546 -7.899401496 1.035200326 0.984348649 1.134994469 0.846989178 0.02470071 0.190074499 0.389049762 0.018667001 0.009439372 1.26E-08 7.899401496 0.15064582 CAPSAGS(ph)PAAAVGR ddPTM_K562_Paclitaxel_30min_R1 1 CAPSAGSPAAAVGR 14 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 CAPS(0.002)AGS(0.998)PAAAVGR 195.94 8.55E-09 123830000 2131 1754.4 2575.4 2446.4 1895.7 1701.5 1784.7 2624.6 2187.7 2201.3 TRUE FALSE 2160.840575 1945.951325 1925.208418 2289.498854 2153.926434 2003.237135 2123.337508 2401.623848 2397.83836 1752.673852 1.232882303 1.110275778 1.098440772 1.30628916 1.228937393 1.142960587 1.211484673 1.370262839 1.368103003 1 10.77534184 -6.255008661 24.62187755 1.243239936 1.143507235 0.109851319 0.108286014 836.0840047 3201181.382 0.029757492 0.049953291 5.56E-07 6.255008661 -0.099732701 CAPSAGS(ph)PAAAVGRES(ph)PGAAATSSSGPQAQQHR ddPTM_K562_Paclitaxel_30min_R1 3 CAPSAGSPAAAVGRESPGAAATSSSGPQAQQHR 33 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 2 CAPS(0.196)AGS(0.81)PAAAVGRES(0.974)PGAAAT(0.014)S(0.004)S(0.001)SGPQAQQHR;CAPS(0.11)AGS(0.893)PAAAVGRES(0.952)PGAAAT(0.034)S(0.008)S(0.003)S(0.001)GPQAQQHR;CAPS(0.087)AGS(0.913)PAAAVGRES(0.999)PGAAAT(0.001)SSSGPQAQQHR 102.46 3.18E-12 740118000 2354.03 2366.94 3224.99 2677.95 1986.29 2013.64 1900.27 2582.86 2830.93 2810.7 TRUE FALSE 2386.993683 2625.370514 2410.801388 2506.198273 2256.856326 2370.730781 2260.836312 2363.429921 3102.853475 2237.877797 1.06663272 1.173151866 1.077271239 1.119899521 1.008480592 1.059365612 1.010259057 1.056103208 1.386516046 1 11.12791554 -11.40003496 3.820922237 0.999493355 1.099340314 0.081652489 0.104668974 0.000447342 7.02E-05 0.100357376 0.024217205 3.98E-12 11.40003496 0.09984696 CAPSAGSPAAAVGRES(ph)PGAAATSSSGPQAQQHR ddPTM_K562_Paclitaxel_30min_R1 4 CAPSAGSPAAAVGRESPGAAATSSSGPQAQQHR 33 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 CAPSAGSPAAAVGRES(0.986)PGAAAT(0.003)S(0.003)S(0.003)S(0.004)GPQAQQHR;CAPSAGS(0.002)PAAAVGRES(0.965)PGAAAT(0.022)S(0.008)S(0.003)S(0.001)GPQAQQHR;CAPSAGS(0.003)PAAAVGRES(0.978)PGAAAT(0.004)S(0.006)S(0.006)S(0.002)GPQAQQHR;CAPSAGS(0.001)PAAAVGRES(0.999)PGAAATSSSGPQAQQHR 145.6 1.48E-31 484274000 2967.09 2489.82 3814.66 3497.43 2702.78 2937.39 3009.6 3065.2 3138.62 3468.88 TRUE FALSE 3008.638414 2761.666968 2851.601904 3273.120494 3070.944394 3458.294873 3580.655889 2804.792128 3440.098475 2761.920352 1.089328449 0.999908258 1.032470723 1.185088662 1.111887384 1.252134179 1.296437056 1.015522452 1.245545865 1 11.431456 -6.25741905 24.29816947 1.166492829 1.036503042 0.243414237 0.094050394 299.955017 1812862.634 0.025057171 0.041406043 5.53E-07 6.25741905 -0.129989788 CCS(ph)PPNELGFR ddPTM_K562_Paclitaxel_30min_R1 2 CCSPPNELGFR 11 0 Q9BYW2;C9JG86;H7C3H4;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 CCS(1)PPNELGFR;CCS(1)PPNELGFR 86.114 0.024657 43642000 3150.7 2435.36 3703.6 3253.9 2485.68 2223.53 2247.74 2540 2173.37 2839.2 TRUE FALSE 3194.819521 2701.260841 2768.580374 3045.209418 2824.271699 2617.841826 2674.236931 2324.211146 2382.131899 2260.569482 1.413280833 1.194947053 1.224726954 1.34709835 1.249362925 1.158045283 1.182992583 1.028152934 1.05377513 1 11.14247055 -7.923156457 0.856266537 1.001393385 1.289124926 0.756237745 0.062643248 0.309605638 0.428876697 0.052374913 0.027338343 1.19E-08 7.923156457 0.287731541 CETSAS(ph)ELER ddPTM_K562_Paclitaxel_30min_R1 2 CETSASELER 10 0 H3BTQ3;P41440-3;P41440-2;P41440 H3BTQ3 SLC19A1 Folate transporter 1 1 CET(0.044)S(0.184)AS(0.771)ELER;CET(0.001)S(0.017)AS(0.981)ELER 118.9 0.003127 80600000 2256.1 1594.4 2603.3 1878.11 1330.55 1339.75 1512.75 1820.57 1637.04 2063.91 TRUE FALSE 2287.692361 1768.481984 1946.064718 1757.656431 1511.793436 1577.335851 1799.786415 1665.901215 1794.285006 1643.284009 1.39214667 1.076187667 1.184253426 1.069599912 0.919983051 0.959868071 1.095237589 1.013763419 1.091889775 1 10.68236613 -2 0.781239914 1.022156438 79.57872358 0.711368607 0.067876745 258.7332846 0.972508239 0.025635369 35902.85256 0.01 2 78.55656714 CGEEGHLS(ph)PYCR ddPTM_K562_Paclitaxel_30min_R1 1 CGEEGHLSPYCR 12 0 Q9NUD5-2;Q9NUD5 Q9NUD5-2 ZCCHC3 Zinc finger CCHC domain-containing protein 3 1 CGEEGHLS(0.932)PY(0.068)CR 79.804 0.02443 6846500 1648.6 1711 2522.9 2098.2 1678.6 1650.6 1576.1 2036.8 2209.3 2309.9 TRUE FALSE 1671.685486 1897.812766 1885.962692 1963.630843 1907.253739 1943.310734 1875.156747 1863.761127 2421.513136 1839.141112 0.908949006 1.03190166 1.025458395 1.067689059 1.037035019 1.056640364 1.019582856 1.013386691 1.316654345 1 10.84481646 -3.486930828 0.527180763 1.07973236 4.80E-26 0.245044319 0.085649474 37.26181081 1.765321476 0.044181532 37.05602088 0.000325889 3.486930828 -1.07973236 CGGSS(ph)S(ph)EES(ph)KY(ph)SWQR ddPTM_K562_Paclitaxel_30min_R1 1 CGGSSSEESKYSWQR 15 1 E9PQ38 E9PQ38 KBTBD4 4 CGGS(0.451)S(0.555)S(0.993)EES(0.756)KY(0.701)S(0.544)WQR 63.29 0.02728 14261000 1273.6 984.85 1924.1 1732.7 1186.9 1360.2 927.77 1211.3 1079.6 965.85 TRUE FALSE 1291.434329 1092.379254 1438.337158 1621.572377 1348.575874 1601.412372 1103.809514 1108.392504 1183.300404 769.0092398 1.679348261 1.420502117 1.870376952 2.108651357 1.753653668 2.0824358 1.435365737 1.44132534 1.538733662 1 9.586857122 -8.901362156 0.803373457 1.02663333 1.79854338 0.540068349 0.217845407 0.519210178 0.763683594 0.22433697 0.084526217 1.25E-09 8.901362156 0.771910051 CGGVEQAS(ph)SSPRSDPLGSTQDHALSQESSEPGCR ddPTM_K562_Paclitaxel_30min_R1 1 CGGVEQASSSPRSDPLGSTQDHALSQESSEPGCR 34 1 Q5VZL5-2;Q5VZL5-4;Q5VZL5;H7C1I7;Q5VZL5-3 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 CGGVEQAS(0.237)S(0.237)S(0.237)PRS(0.237)DPLGS(0.035)T(0.017)QDHALSQESSEPGCR 40.872 0.021142 84269000 646.98 549.8 715.59 576.88 556.89 570.8 505.24 604.8 598.63 811.17 TRUE FALSE 656.0397161 609.8290233 534.9304542 539.8814988 632.7478462 672.0233656 601.1066525 553.418465 656.1310862 645.8531087 1.015772328 0.944222479 0.828254052 0.835919951 0.979708602 1.040520447 0.930717286 0.856879773 1.0159138 1 9.335062269 -6.805196745 24.99796353 0.964966903 0.903212726 0.172014872 0.06863165 278.2090164 158935.3192 0.023006503 0.026087049 1.57E-07 6.805196745 -0.061754178 CGGVEQASS(ph)SPRSDPLGSTQDHALSQESSEPGCR ddPTM_K562_Paclitaxel_30min_R1 1 CGGVEQASSSPRSDPLGSTQDHALSQESSEPGCR 34 1 Q5VZL5-2;Q5VZL5-4;Q5VZL5;H7C1I7;Q5VZL5-3 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 CGGVEQAS(0.076)S(0.246)S(0.246)PRS(0.246)DPLGS(0.093)T(0.093)QDHALSQESSEPGCR 48.686 0.0030282 76702000 1212.6 934.5 1138.5 1099.4 833.67 1083.6 881.46 961.34 1175.5 1305.8 TRUE FALSE 1229.580141 1036.53187 851.0715942 1028.889405 947.2299681 1275.761246 1048.712433 879.6681665 1288.412027 1039.677243 1.182655626 0.996974664 0.818592116 0.989623858 0.911080794 1.227074319 1.00869038 0.846097356 1.239242309 1 10.02192001 CGGVEQASSS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 CGGVEQASSSPR 12 0 Q5VZL5-2;Q5VZL5-4;Q5VZL5;H7C1I7;Q5VZL5-3 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 CGGVEQASS(0.01)S(0.99)PR;CGGVEQAS(0.008)S(0.098)S(0.894)PR 160.46 6.17E-42 10365000 7345.6 6305.6 9517.9 7907.6 6604.6 5821.6 6129.2 7507.4 5347.7 8789.1 TRUE FALSE 7448.461063 6994.066732 7114.988429 7400.441929 7504.258337 6853.979021 7292.183703 6869.59951 5861.370479 6997.876596 1.064388742 0.999455569 1.016735338 1.057526784 1.072362199 0.979436966 1.04205663 0.981669142 0.837592718 1 12.77270151 -8.528358559 24.30718423 0.915741148 1.030183195 0.501488565 0.045546329 81.27251855 360487.2133 0.028640564 0.010909881 2.96E-09 8.528358559 0.114442047 CGICGREFT(ph)LLANMKR ddPTM_K562_Paclitaxel_30min_R1 1 CGICGREFTLLANMKR 16 2 Q8N895 Q8N895 ZNF366 Zinc finger protein 366 1 CGICGREFT(1)LLANMKR 67.902 0.023371 1350200000 2265.9 1907.3 2380.9 1812.5 1495.5 1608.6 1841.6 2004.3 1517 1975.4 TRUE FALSE 2297.629591 2115.545464 1779.812348 1696.254362 1699.212419 1893.862624 2191.033986 1834.022205 1662.714628 1572.812396 1.460841482 1.345071714 1.131611344 1.078484864 1.080365607 1.204124935 1.393067598 1.166078173 1.057160175 1 10.61913088 -5.610607426 3.374087435 1.151827085 1.443750154 0.523996136 0.102563962 0.203265545 4.404437493 0.028903779 0.09889609 2.45E-06 5.610607426 0.291923069 CGLGQENSDNEHLVENEVSLLLEESDLRRS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 CGLGQENSDNEHLVENEVSLLLEESDLRRSPR 32 2 P46100-4;P46100;A0A096LNW1;A0A096LNL9;P46100-6;P46100-2;P46100-5;P46100-3 P46100-4 ATRX Transcriptional regulator ATRX 1 CGLGQENSDNEHLVENEVS(0.014)LLLEES(0.07)DLRRS(0.916)PR;CGLGQENSDNEHLVENEVS(0.125)LLLEES(0.125)DLRRS(0.751)PR 107.47 2.09E-14 41818000 2205.54 1603.11 2460.69 1990.22 1855.62 1846.19 1565.92 1973.57 1971.54 2376.96 TRUE FALSE 2236.424365 1778.142971 1839.458376 1862.576197 2108.38686 2173.585875 1863.045145 1805.90291 2160.915226 1892.534247 1.181708795 0.939556562 0.971955133 0.984170405 1.114054799 1.148505438 0.984418194 0.954224692 1.141810368 1 10.88610369 -5.237865795 23.75994587 1.027294236 1.181709143 0.279441077 0.07475023 4799.297619 4837095.03 0.019521777 1.006375441 5.78E-06 5.237865795 0.154414907 CGSGPVHISGQHLVAVEEDAES(ph)EDEEEEDVK ddPTM_K562_Paclitaxel_30min_R1 8 CGSGPVHISGQHLVAVEEDAESEDEEEEDVK 31 0 P06748-2;P06748;P06748-3;E5RI98 P06748-2 NPM1 Nucleophosmin 1 CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK;CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVK 140.59 2.01E-30 1160861000 18231.9 16550.3 32933.9 22336.3 16098.92 15621.2 13670.5 20232 11684.28 28259.2 TRUE FALSE 18487.20285 18357.31772 24619.32962 20903.74969 18291.86546 18391.40049 16264.40601 18513.16532 12806.6073 22499.95953 0.821654938 0.815882255 1.094194396 0.929057213 0.812973261 0.817397048 0.72286379 0.822808827 0.569183571 1 14.45763479 -6.904431489 3.18729555 0.773846001 0.920706861 0.194644823 0.122936101 0.380460864 7.729032796 0.040014981 0.045963638 1.25E-07 6.904431489 0.14686086 CGSGPVHISGQHLVAVEEDAES(ph)EDEEEEDVKLLSISGK ddPTM_K562_Paclitaxel_30min_R1 6 CGSGPVHISGQHLVAVEEDAESEDEEEEDVKLLSISGK 38 1 P06748-2;P06748;P06748-3;E5RI98 P06748-2 NPM1 Nucleophosmin 1 CGSGPVHISGQHLVAVEEDAES(1)EDEEEEDVKLLSISGK;CGSGPVHISGQHLVAVEEDAES(0.993)EDEEEEDVKLLS(0.006)IS(0.001)GK;CGSGPVHISGQHLVAVEEDAES(0.999)EDEEEEDVKLLS(0.001)ISGK;CGSGPVHIS(0.002)GQHLVAVEEDAES(0.914)EDEEEEDVKLLS(0.065)IS(0.02)GK;CGSGPVHISGQHLVAVEEDAES(0.998)EDEEEEDVKLLS(0.001)ISGK;CGSGPVHISGQHLVAVEEDAES(0.95)EDEEEEDVKLLS(0.046)IS(0.004)GK 114.14 8.32E-24 196351000 7642.91 4285.84 14739.89 8045.51 5308.98 4587.57 3763.14 6692.49 5048.38 9748.85 TRUE FALSE 7749.93432 4753.782505 11018.62247 7529.506999 6032.152958 5401.111127 4477.17617 6123.921201 5533.299456 7762.029019 0.998441812 0.612440702 1.419554403 0.970043655 0.7771361 0.695837533 0.576804874 0.788958813 0.712867659 1 12.92221811 -6.778422351 4.404254528 0.73251097 1.005033674 0.244520087 0.206738335 0.275830313 12.58152475 0.064461961 0.077775021 1.67E-07 6.778422351 0.272522704 CIACQAAKLS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 CIACQAAKLSPR 12 1 P49790-2;P49790;P49790-3 P49790-2 NUP153 Nuclear pore complex protein Nup153 1 CIACQAAKLS(1)PR 84.173 0.018313 135830000 2528.8 2403.8 3876.8 3063.9 2500.6 1902.8 1924.5 3138.9 2532.4 4250.2 TRUE FALSE 2564.211002 2666.255013 2898.053892 2867.395168 2841.224056 2240.234863 2289.663828 2872.230853 2775.648335 3384.006907 0.757744021 0.787898809 0.856397156 0.847337268 0.839603504 0.662006587 0.676613225 0.84876625 0.820225375 1 11.7245168 -9.279933167 1.617233643 0.999282175 0.782402121 0.494001012 0.065598371 1.00431939 4.239888197 0.069923619 0.020050608 5.25E-10 9.279933167 -0.216880054 CLANLRPLLDS(ph)GT(ph)MGTK ddPTM_K562_Paclitaxel_30min_R1 1 CLANLRPLLDSGTMGTK 17 1 A0AVT1;H0Y8S8;A0AVT1-2 A0AVT1 UBA6 Ubiquitin-like modifier-activating enzyme 6 2 CLANLRPLLDS(0.667)GT(0.667)MGT(0.667)K 78.505 0.014874 0 1313.8 1109.9 1829.2 1340.3 1061.1 1128.8 1029.5 1063.5 1236.7 1092.1 TRUE FALSE 1332.197253 1231.082635 1367.395837 1254.339157 1205.639785 1328.976831 1224.842251 973.1490368 1355.490561 869.5294205 1.532089912 1.415803314 1.572569949 1.442549415 1.386542831 1.528386274 1.408626576 1.119167464 1.558878318 1 9.764091032 -13.56047001 0.167635346 1.67E-11 1.559364245 0.566752142 0.119572787 53.79774292 0.784198917 18.94513479 0.460519135 2.75E-14 13.56047001 1.559364245 CLGPPTT(ph)PGPYR ddPTM_K562_Paclitaxel_30min_R1 1 CLGPPTTPGPYR 12 0 A2IDA3;P29372-5;P29372-4;P29372-2;P29372 A2IDA3 MPG DNA-3-methyladenine glycosylase 1 CLGPPT(0.063)T(0.937)PGPYR 107.34 0.016579 21278000 3449 2857.3 5037.4 3716.5 2912.8 2874 2442.2 3076.5 2635.1 4359.9 TRUE FALSE 3497.296641 3169.269677 3765.646068 3478.140324 3309.572674 3383.663547 2905.594701 2815.132122 2888.213129 3471.349987 1.007474514 0.912979011 1.084778568 1.001956109 0.953396427 0.97473996 0.837021537 0.810961768 0.832014386 1 11.76128111 -7.714476578 5.688561725 0.854142786 0.990137586 0.448815152 0.063848621 0.156088465 11.52706379 0.02451755 0.01848234 1.93E-08 7.714476578 0.1359948 CLNNVIES(ph)PGLNVMR ddPTM_K562_Paclitaxel_30min_R1 1 CLNNVIESPGLNVMR 15 0 Q9HCM4-4;Q9HCM4-3;Q9HCM4 Q9HCM4-4 EPB41L5 Band 4.1-like protein 5 1 CLNNVIES(1)PGLNVMR 145.94 5.46E-06 9374600 1341.9 1554.1 1532.2 1379.3 1017.2 1342.3 1116 1383 1753.4 1672.7 TRUE FALSE 1360.69074 1723.781894 1145.37716 1290.837872 1155.759861 1580.338058 1327.755174 1265.505518 1921.821904 1331.802822 1.021690837 1.294322151 0.860020073 0.969240979 0.867816048 1.18661564 0.996960776 0.95021988 1.443022851 1 10.37916479 -8.727454952 24.99998576 1.2215132 1.020521135 0.203755462 0.160591734 246.4567008 181301.7259 0.105054304 0.039702051 1.87E-09 8.727454952 -0.200992065 CLQES(ph)WGQLAS(ph)MY(ph)VSTR ddPTM_K562_Paclitaxel_30min_R1 1 CLQESWGQLASMYVSTR 17 0 I3L191;Q5XG92-8 I3L191 CES4A 3 CLQES(1)WGQLAS(0.977)MY(0.91)VS(0.094)T(0.019)R 55.097 0.023308 21470000 1267.9 1234.3 1652.6 1778.8 1311.3 1438.2 1232.2 1553.9 828.99 1512.9 TRUE FALSE 1285.654512 1369.065048 1235.380691 1664.71573 1489.92126 1693.244577 1466.003517 1421.886496 908.6181935 1204.57015 1.06731394 1.136559003 1.025578038 1.38199982 1.236890405 1.40568366 1.217034573 1.180409872 0.754309074 1 10.2343027 -8.691154214 7.168614983 0.87929869 1.213395519 0.521195753 0.126241524 0.161890675 13.45816436 0.091286547 0.033579689 2.04E-09 8.691154214 0.334096829 CLS(ph)PDDSTVK ddPTM_K562_Paclitaxel_30min_R1 2 CLSPDDSTVK 10 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 CLS(1)PDDSTVK;CLS(1)PDDSTVK 177.04 0.00030393 180812000 8111.7 7175.8 13869.6 8377.5 6564.6 5959 5391 8432.9 7073 10822.1 TRUE FALSE 8225.288827 7959.278111 10368.04794 7840.204646 7458.80966 7015.744981 6413.914107 7716.472508 7752.393253 8616.55008 0.95459189 0.923719823 1.203271361 0.909900665 0.865637592 0.814217398 0.744371477 0.895540841 0.89970965 1 13.07289464 -6.508203164 23.4869043 0.858549905 1.023470106 0.364316795 0.09227444 309.810232 495822.1973 0.026570186 0.037797289 3.10E-07 6.508203164 0.164920201 CLVAGLLS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 CLVAGLLSPR 10 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 CLVAGLLS(1)PR;CLVAGLLS(1)PR 113.44 0.0044789 78240000 4228.6 4188.6 5007.1 4185.3 3373.2 3276.3 4042.7 4530.2 4089.7 5331.5 TRUE FALSE 4287.813446 4645.925513 3742.995678 3916.873591 3832.686949 3857.305803 4809.781221 4145.331233 4482.533958 4244.937373 1.01010052 1.094462675 0.881755218 0.922716461 0.902884215 0.908683795 1.13306294 0.97653531 1.055971753 1 12.05152755 -7.73889156 24.99999508 1.039437195 0.952892151 0.277530115 0.069492708 343.8246551 381217.104 0.02816723 0.02180203 1.82E-08 7.73889156 -0.086545045 CMIDQAHQEERPIR ddPTM_K562_Paclitaxel_30min_R1 1 CMIDQAHQEERPIR 14 1 A0A087WVB9;K7ERF1;Q9UBQ5;K7ES31;K7EQM4;Q9UBQ5-2 A0A087WVB9 EIF3K Eukaryotic translation initiation factor 3 subunit K 0 89.43 0.016151 17183000 1377.6 1204.8 1191.5 1282.6 929.45 891.06 1066.1 1226.5 1054.3 1240.8 FALSE TRUE 1396.89065 1336.344138 890.6910887 1200.339777 1056.056826 1049.07698 1268.38691 1122.301169 1155.570226 987.9242789 1.413965301 1.352678709 0.901578297 1.215011922 1.068965353 1.06190019 1.283890817 1.136019423 1.169695138 1 9.948256658 -5.598018829 9.449023884 1.117179987 1.398713518 0.53964109 0.103113558 0.208632582 24.04249367 0.025405859 0.067461366 2.52E-06 5.598018829 0.281533532 CMMAQYNRHDS(ph)PEDVK ddPTM_K562_Paclitaxel_30min_R1 2 CMMAQYNRHDSPEDVK 16 1 H0YGI8;P31948-3;P31948;P31948-2 H0YGI8 STIP1 Stress-induced-phosphoprotein 1 1 CMMAQY(0.001)NRHDS(0.999)PEDVK;CMMAQYNRHDS(1)PEDVK 112.91 0.0006291 21546000 2093.82 1812.44 3725.1 2424.3 1626.15 1551.35 1636.23 2384 1720.38 2389.2 TRUE FALSE 2123.13994 2010.328328 2784.652434 2268.816249 1847.659161 1826.46014 1946.696101 2181.46432 1885.630186 1902.279729 1.11610291 1.056799533 1.463850133 1.192682766 0.971286785 0.960142777 1.023349023 1.146763164 0.991247584 1 10.89351369 -6.70437005 6.917242758 1.020599545 1.21665394 0.422432019 0.109741086 0.224678456 21.61283812 0.034310145 0.04411153 1.98E-07 6.70437005 0.196054395 CPAPTPSLLNIPLS(ph)SPGR ddPTM_K562_Paclitaxel_30min_R1 2 CPAPTPSLLNIPLSSPGR 18 0 Q12809-7;Q12809-4;Q12809;Q12809-2 Q12809-7 KCNH2 Potassium voltage-gated channel subfamily H member 2 1 CPAPT(0.002)PS(0.211)LLNIPLS(0.457)S(0.33)PGR;CPAPT(0.001)PS(0.149)LLNIPLS(0.425)S(0.425)PGR 75.045 0.016523 47828100 2563.69 2576.4 3184.27 2660.11 2430.57 2284.64 2366.67 3309.12 1904.65 3469.94 TRUE FALSE 2599.58957 2857.700065 2380.361656 2489.502451 2761.654784 2689.788826 2815.733278 3027.989601 2087.600143 2762.764323 0.940937867 1.034362591 0.861586939 0.901091139 0.999598395 0.973586058 1.019172448 1.095999965 0.75562006 1 11.43189678 -6.775269715 24.81548596 0.981034462 0.93642036 0.039852986 0.090941907 739.4262338 1326732.553 0.027785996 0.031675528 1.68E-07 6.775269715 -0.044614103 CPAPTPSLLNIPLS(ph)SPGRRPR ddPTM_K562_Paclitaxel_30min_R1 1 CPAPTPSLLNIPLSSPGRRPR 21 2 Q12809-7;Q12809-4;Q12809;Q12809-2 Q12809-7 KCNH2 Potassium voltage-gated channel subfamily H member 2 1 CPAPTPSLLNIPLS(0.5)S(0.5)PGRRPR 76.668 0.020042 133770000 0 0 282.04 178.77 141.08 55.102 270.2 164.21 172.81 352.32 TRUE FALSE 0 0 210.8355138 167.3044923 160.2974845 64.87356603 321.4690395 150.2593355 189.4091726 280.5169906 0 0 0.751596234 0.596414827 0.57143592 0.231264302 1.145987766 0.53565146 0.675214618 1 8.131944346 -5.756849712 24.9782669 0.664408938 1.88E-07 0.569513315 0.238687653 77.92721931 424087.1657 0.05966683 0.147178225 1.75E-06 5.756849712 -0.66440875 CPARLS(ph)DSENEEPSR ddPTM_K562_Paclitaxel_30min_R1 2 CPARLSDSENEEPSR 15 1 Q8NCN4 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 1 CPARLS(0.957)DS(0.043)ENEEPSR;CPARLS(0.911)DS(0.088)ENEEPS(0.001)R 151.73 8.12E-06 33433000 3160.9 2944.5 3747.1 3077.1 2864.18 2722.88 2710.2 3261.1 2140.87 3636.1 TRUE FALSE 3205.162352 3265.990468 2801.098261 2879.748579 3254.329807 3205.744537 3224.446302 2984.0492 2346.510129 2895.060824 1.107113994 1.128124992 0.967543838 0.994710907 1.124097214 1.10731509 1.113774977 1.030737999 0.810521876 1 11.49937794 -8.586906884 7.100617907 0.907184037 1.074837889 0.50726489 0.066939004 0.185731497 16.76582384 0.04695107 0.017460768 2.59E-09 8.586906884 0.167653852 CPARLSDS(ph)ENEEPSR ddPTM_K562_Paclitaxel_30min_R1 1 CPARLSDSENEEPSR 15 1 Q8NCN4 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 1 CPARLS(0.388)DS(0.592)ENEEPS(0.019)R 99.069 0.016729 17222000 949.43 881.21 1081.1 923.4 1018.3 760.08 621.41 1085 609.43 1102.1 TRUE FALSE 962.7249492 977.4234879 808.1629341 864.177257 1157.0097 894.8695159 739.3193035 992.8224776 667.9684745 877.491415 1.097133183 1.113883818 0.920992411 0.984827022 1.318542472 1.019804297 0.842537364 1.131432696 0.761225082 1 9.777241201 -7.526252489 24.99512618 0.942811391 1.083209336 0.229046619 0.13205563 171.9443754 1273861.33 0.049904275 0.038847258 2.98E-08 7.526252489 0.140397945 CPFPAGAALACCS(ph)EDEEDDEEHEGGGSR ddPTM_K562_Paclitaxel_30min_R1 3 CPFPAGAALACCSEDEEDDEEHEGGGSR 28 0 Q147X3 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 CPFPAGAALACCS(1)EDEEDDEEHEGGGSR;CPFPAGAALACCS(1)EDEEDDEEHEGGGSR;CPFPAGAALACCS(1)EDEEDDEEHEGGGSR 152.2 4.59E-32 57091000 2890.73 2624.29 3449.47 3340.14 2671.16 2916.53 2443.17 2935.39 2476.19 3730.86 TRUE FALSE 2931.209139 2910.818857 2578.608636 3125.91837 3035.017215 3433.735645 2906.748753 2686.010297 2714.039113 2970.508684 0.986770096 0.979905857 0.868069718 1.052317533 1.021716325 1.155941965 0.978535686 0.904225701 0.913661397 1 11.53649429 -8.005933493 24.99002376 0.933642253 1.010443806 0.167942898 0.071050337 473.0289604 1992249.91 0.032936957 0.021416746 9.86E-09 8.005933493 0.076801553 CPGNITEESHDSVY(ph)S(ph)S(ph)VT(ph)QNR ddPTM_K562_Paclitaxel_30min_R1 1 CPGNITEESHDSVYSSVTQNR 21 0 Q9P2P6 Q9P2P6 STARD9 StAR-related lipid transfer protein 9 4 CPGNIT(0.004)EES(0.004)HDS(0.121)VY(0.922)S(0.975)S(0.981)VT(0.994)QNR 43.099 0.025798 1375400000 66.401 117.13 210.35 124.63 59.096 145.64 67.68 210.57 154.35 185.53 TRUE FALSE 67.33081886 129.9186495 157.2445409 116.6367896 67.1458757 171.4672091 80.52192669 192.6807642 169.1760072 147.7188842 0.455803733 0.879499261 1.064485031 0.789586181 0.454551739 1.160767021 0.545102457 1.304374625 1.145256465 1 7.20671046 -8.271059034 24.99535586 1.168611668 0.784549055 0.358953791 0.234661125 770.7712167 2002731.189 0.12296038 0.060266687 5.36E-09 8.271059034 -0.384062613 CPS(ph)QSSSRPAAMISQPPTPPTGQPVR ddPTM_K562_Paclitaxel_30min_R1 2 CPSQSSSRPAAMISQPPTPPTGQPVR 26 1 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 1 CPS(0.78)QS(0.073)S(0.073)S(0.073)RPAAMIS(0.001)QPPTPPTGQPVR;CPS(0.773)QS(0.132)S(0.046)S(0.046)RPAAMIS(0.002)QPPTPPTGQPVR 69.523 0.00078467 40791000 882.06 842.66 1123.53 1055.37 968.55 714.54 826.91 1282.49 497.65 1232.44 TRUE FALSE 894.4115614 934.6644685 839.8809559 987.6832919 1100.482908 841.2536364 983.8118557 1173.534469 545.4515061 981.2680515 0.91148546 0.952506776 0.855913891 1.006537704 1.121490612 0.857312775 1.002592364 1.195936694 0.55586392 1 9.938503479 -6.275502451 24.0818625 0.974855609 0.911222508 0.020375236 0.163376209 2084.52569 3569577.345 0.044273199 0.066096055 5.30E-07 6.275502451 -0.063633101 CQEADREELNHWAR ddPTM_K562_Paclitaxel_30min_R1 2 CQEADREELNHWAR 14 1 O75081;O75081-2;O75081-4;H3BNH2 O75081 CBFA2T3 Protein CBFA2T3 0 ; 109.16 0.0037016 37227000 4216.8 3795.1 5253.5 4773.4 4060.5 3966 3712.2 4907.1 4473.2 5040.2 FALSE TRUE 4275.84821 4209.461852 3927.188951 4467.255489 4613.608845 4669.314415 4416.570571 4490.211226 4902.870847 4013.004473 1.065497992 1.048955186 0.978615642 1.113194744 1.149664516 1.163545779 1.100564577 1.118915081 1.221745672 1 11.97046705 -6.418721084 6.244227326 1.132245676 1.033343401 0.357722663 0.056801836 0.237349024 12.09136989 0.015358057 0.02284543 3.81E-07 6.418721084 -0.098902275 CQENGQELS(ph)PIALEPGPEPHR ddPTM_K562_Paclitaxel_30min_R1 1 CQENGQELSPIALEPGPEPHR 21 0 A0A0A0MR08;O94966-2;O94966-7;O94966-6;O94966-5;H0YB23 A0A0A0MR08 USP19 Ubiquitin carboxyl-terminal hydrolase 19 1 CQENGQELS(1)PIALEPGPEPHR 83.788 0.001172 7005200 847.23 590.5 1047.9 887.74 753.43 559.28 841.33 709.35 786.75 883.95 TRUE FALSE 859.0938339 654.9727869 783.3446847 830.8043298 856.0599217 658.4604553 1000.967975 649.0862899 862.3208528 703.8005048 1.220649642 0.930622787 1.113020919 1.180454297 1.216338886 0.935578265 1.422232534 0.922258915 1.225234775 1 9.459022739 -5.984979779 24.95180026 1.134468361 1.062182647 0.015440725 0.156510669 907.0451549 1506776.466 0.037912115 0.078873151 1.04E-06 5.984979779 -0.072285714 CQHAAEIITDLLR ddPTM_K562_Paclitaxel_30min_R1 1 CQHAAEIITDLLR 13 0 Q96AE4;E9PEB5;Q96AE4-2 Q96AE4 FUBP1 Far upstream element-binding protein 1 0 98.337 0.0052916 0 1275.9 1194.4 1632.7 1294.1 1222.8 1204.6 1314.7 1223.7 1498.3 1812.5 FALSE TRUE 1293.766536 1324.808631 1220.504692 1211.102218 1389.366062 1418.218897 1564.157462 1119.739047 1642.21841 1443.111505 0.89651183 0.918022361 0.845745244 0.839229827 0.962757249 0.982750738 1.08387845 0.775919978 1.137970561 1 10.49496706 -6.887078384 5.329838118 0.986015424 0.876329945 0.284446797 0.090314196 0.295269157 12.66061004 0.027079147 0.03092733 1.30E-07 6.887078384 -0.109685479 CQT(ph)AEADS(ph)ESDHEVPEPESEMK ddPTM_K562_Paclitaxel_30min_R1 1 CQTAEADSESDHEVPEPESEMK 22 0 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 2 CQT(0.975)AEADS(0.512)ES(0.512)DHEVPEPESEMK 69.747 0.010277 18275000 2746.5 2050.2 4501.1 2475.4 1668.5 2072 1714.6 2685.4 2392.1 3747.5 TRUE FALSE 2784.959474 2274.047769 3364.741636 2316.638923 1895.777948 2439.440108 2039.936399 2457.258508 2621.871893 2983.757443 0.933373281 0.762142303 1.127686047 0.776416638 0.635365972 0.817573196 0.683680372 0.823544995 0.878714823 1 11.54291454 CQT(ph)AEADSES(ph)DHEVPEPESEMK ddPTM_K562_Paclitaxel_30min_R1 2 CQTAEADSESDHEVPEPESEMK 22 0 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 2 CQT(0.786)AEADS(0.272)ES(0.941)DHEVPEPESEMK;CQT(0.588)AEADS(0.461)ES(0.945)DHEVPEPES(0.006)EMK 73.722 0.0043979 39808000 6204.4 5306.4 11253.7 7417.1 4943.6 4613.6 4299.8 6318.8 6579.4 7963.9 TRUE FALSE 6291.280742 5885.770697 8412.564251 6941.400404 5617.002016 5431.757182 5115.664604 5781.978499 7211.380768 6340.852809 0.992182114 0.928230141 1.326724418 1.094710856 0.885843306 0.856628808 0.80677864 0.911861334 1.137288782 1 12.63046117 -6.755424056 24.81318879 0.918523565 1.091464124 0.249069373 0.127979339 181.2301811 747568.8428 0.040196816 0.050525676 1.76E-07 6.755424056 0.172940558 CQVFEETQIGGER ddPTM_K562_Paclitaxel_30min_R1 2 CQVFEETQIGGER 13 0 Q99832-2;Q99832-4;Q99832-3;Q99832 Q99832-2 CCT7 T-complex protein 1 subunit eta 0 ; 133.05 0.0018463 28498000 1143.8 1260.19 1715.09 1858.91 1325 1575.26 1473.3 1588.46 1163.08 1816.02 FALSE TRUE 1159.816729 1397.781806 1282.094318 1739.687833 1505.487432 1854.610243 1752.850984 1453.510408 1274.799031 1445.914127 0.802133894 0.966711494 0.886701564 1.203175071 1.041201136 1.28265587 1.212278759 1.005253618 0.881656114 1 10.49776616 -6.243385074 23.99911739 1.100835459 0.893335179 0.380966911 0.118573588 541.7415905 720120.8189 0.033865159 0.058480648 5.71E-07 6.243385074 -0.20750028 CRDDSFFGETSHNYHKFDSEYER ddPTM_K562_Paclitaxel_30min_R1 1 CRDDSFFGETSHNYHKFDSEYER 23 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991;H0Y8T4 D6REM6 MATR3 Matrin-3 0 54.857 0.0080358 11155000 2261.6 1987.1 2885.5 2184.1 1757.6 1971.2 1434.4 2196.5 1891.5 2441.4 FALSE TRUE 2293.269378 2204.058298 2157.019838 2044.021602 1997.014876 2320.764643 1706.569912 2009.893615 2073.187026 1943.84134 1.179761604 1.133867386 1.109668672 1.051537263 1.027354875 1.193906414 0.877936834 1.033980281 1.066541278 1 10.92469475 -2.000008568 0.282435922 1.003474268 2.42574244 0.351575597 0.071229381 58.37153391 0.824517088 0.077866436 41.0957485 0.009999803 2.000008568 1.422268172 CREMDEQIR ddPTM_K562_Paclitaxel_30min_R1 3 CREMDEQIR 9 1 P06753-2;A0A087WWU8;P06753-6;P06753-3;A0A494C0P6;J3KN67;A0A2R2Y2Q3 P06753-2;A0A494C0P6 TPM3 Tropomyosin alpha-3 chain 0 ;; 146.79 0.00075555 26855700 2842.65 2585.43 3811.2 3579 2630.06 2934.18 2750.64 3479.73 2947.54 3665.9 FALSE TRUE 2882.45587 2867.715991 2849.015424 3349.458959 2988.318699 3454.515625 3272.559581 3184.105217 3230.664387 2918.787568 0.987552469 0.982502469 0.976095505 1.147551468 1.023821923 1.183544724 1.121205125 1.090899952 1.106851496 1 11.5111535 -6.249353511 24.8852543 1.101712324 0.982095366 0.513107706 0.050793026 529.922801 1091129.598 0.013100744 0.022484047 5.63E-07 6.249353511 -0.119616958 CRGY(ph)LVRQEFRSR ddPTM_K562_Paclitaxel_30min_R1 1 CRGYLVRQEFRSR 13 3 H0YLE8;A0A0J9YXZ5;P46940;A0A087WWP1 H0YLE8 IQGAP1 Ras GTPase-activating-like protein IQGAP1 1 CRGY(1)LVRQEFRSR 58.781 0.025706 22791000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 CRS(ph)PGMLEPLGSSR ddPTM_K562_Paclitaxel_30min_R1 3 CRSPGMLEPLGSSR 14 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 CRS(1)PGMLEPLGSSR;CRS(0.994)PGMLEPLGS(0.003)S(0.003)R;CRS(1)PGMLEPLGSSR 123.95 0.00038837 1818540000 4444.65 4171.24 5304.34 4888.17 4118.2 3658.31 4022.07 4149.09 4296.65 5249.29 TRUE FALSE 4506.888813 4626.670089 3965.193764 4574.664655 4679.168562 4307.059913 4785.236786 3796.598907 4709.36243 4179.481817 1.078336744 1.106996104 0.94872856 1.09455307 1.119557105 1.03052486 1.144935424 0.908389861 1.126781414 1 12.02910837 -8.240366902 24.99410003 1.013189178 1.07197135 0.141467952 0.070945049 1590.571694 1886584.564 0.03187169 0.018373629 5.75E-09 8.240366902 0.058782171 CRSPGMLEPLGSS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 CRSPGMLEPLGSSR 14 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 CRS(0.281)PGMLEPLGS(0.1)S(0.619)R 100.18 0.020553 1530800000 1237.9 979.78 1345.3 1544.8 1231.7 954.72 827.97 1058.9 1158.6 1293.2 TRUE FALSE 1255.234419 1086.755694 1005.662377 1445.723442 1399.478393 1124.026187 985.0729852 968.9398356 1269.888707 1029.64513 1.219094213 1.055466259 0.976707748 1.404098752 1.359185172 1.091663675 0.956711158 0.941042508 1.23332658 1 10.00793148 -7.514044753 24.02548831 1.027332688 1.196538909 0.251509287 0.139242531 402.7089292 1095241.846 0.05548747 0.045312877 3.06E-08 7.514044753 0.169206221 CS(ph)MRY(ph)LALMVS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 CSMRYLALMVSR 12 1 Q6ZN54-6;Q6ZN54-3;Q6ZN54-5;Q6ZN54-4;Q6ZN54 Q6ZN54-6 DEF8 Differentially expressed in FDCP 8 homolog 3 CS(1)MRY(1)LALMVS(1)R 69.314 0.021576 45259000 2967.9 2708 2914.6 3052.1 2914.3 3076.8 2858.1 3363.1 2230.2 3057.6 TRUE FALSE 3009.459757 3003.668598 2178.773183 2856.351967 3311.277 3622.42728 3400.409555 3077.383663 2444.420675 2434.459442 1.236192193 1.233813366 0.89497206 1.173300289 1.360169302 1.487980131 1.396782175 1.264093215 1.004091764 1 11.24938575 -2.326319949 16.04890987 1.221258167 1.31874707 0 0.18120157 0 0 0.044533138 0 0.004717154 2.326319949 0.097488903 CS(ph)SKSTS(ph)LFET(ph)AWEAKAMAVIACLS(ph)DTDK ddPTM_K562_Paclitaxel_30min_R1 1 CSSKSTSLFETAWEAKAMAVIACLSDTDK 29 2 E7ES84 E7ES84 KNTC1 4 CS(0.423)S(0.423)KS(0.129)T(0.102)S(0.932)LFET(0.992)AWEAKAMAVIACLS(0.5)DT(0.5)DK 49.618 0.0088436 16943000 0 0 0 0 0 0 135.73 69.108 0 0 TRUE FALSE 0 0 0 0 0 0 161.4840589 63.23684404 0 0 0 CSATPSAQVKPIVS(ph)ASPPSR ddPTM_K562_Paclitaxel_30min_R1 1 CSATPSAQVKPIVSASPPSR 20 1 H0Y3K4;Q96EV2 H0Y3K4 RBM33 RNA-binding protein 33 1 CSATPSAQVKPIVS(0.498)AS(0.498)PPS(0.004)R 79.236 0.0033413 139240000 3166.9 2354.4 5156.2 3654.4 2894.3 2475.6 2185.3 3028.5 3414.8 3727.7 TRUE FALSE 3211.246371 2611.461354 3854.453539 3420.02314 3288.552661 2914.612901 2599.949267 2771.210022 3742.806798 2967.992694 1.081958988 0.87987459 1.298673527 1.152301738 1.108005646 0.98201485 0.875995845 0.933698397 1.261056608 1 11.53527183 -7.256727733 22.73277479 0.997999456 1.105182978 0.105273196 0.13395822 257.8281533 1243971.182 0.046536093 0.044975978 5.54E-08 7.256727733 0.107183522 CSATPSAQVKPIVSAS(ph)PPSR ddPTM_K562_Paclitaxel_30min_R1 1 CSATPSAQVKPIVSASPPSR 20 1 H0Y3K4;Q96EV2 H0Y3K4 RBM33 RNA-binding protein 33 1 CSATPSAQVKPIVS(0.246)AS(0.718)PPS(0.036)R 91.481 0.00069432 118070000 1500.9 1604.8 2910.8 1976.8 1381.1 1173.2 1103 1588.8 1706.2 2346.9 TRUE FALSE 1521.917231 1780.017491 2175.93254 1850.016896 1569.229202 1381.250547 1312.288492 1453.821523 1870.088134 1868.600492 0.81446903 0.952593933 1.164471779 0.990054805 0.839788499 0.739189866 0.702284141 0.77802694 1.000796126 1 10.86774244 -6.784844742 5.448892988 0.818683398 0.992267252 0.214845509 0.122689778 0.231633609 19.30168134 0.039408032 0.046659222 1.64E-07 6.784844742 0.173583854 CSDAAGYPHATHDLEGPPLDAYSIQGQHT(ph)ISPLDLAK ddPTM_K562_Paclitaxel_30min_R1 1 CSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAK 37 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 CSDAAGYPHATHDLEGPPLDAYS(0.002)IQGQHT(0.499)IS(0.499)PLDLAK 86.543 1.13E-09 50195000 1647 1667.2 2437.8 1727.3 1145.8 1121.8 1772.4 2876.5 1934.2 4090 TRUE FALSE 1670.063081 1849.230534 1822.34724 1616.518709 1301.877359 1320.735479 2108.703647 2632.12337 2119.988552 3256.455755 0.512846852 0.567866009 0.559610625 0.496404321 0.399783524 0.40557452 0.647545616 0.808278561 0.651011011 1 11.66908691 -8.744678834 0.83436851 0.972350177 0.49510284 0.743915922 0.088649771 0.307000589 0.462146678 0.091054053 0.034610554 1.80E-09 8.744678834 -0.477247337 CSDAAGYPHATHDLEGPPLDAYSIQGQHTIS(ph)PLDLAK ddPTM_K562_Paclitaxel_30min_R1 1 CSDAAGYPHATHDLEGPPLDAYSIQGQHTISPLDLAK 37 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 CSDAAGYPHATHDLEGPPLDAY(0.034)S(0.045)IQGQHT(0.364)IS(0.556)PLDLAK 51.587 0.001213 61981000 1677.7 1648.9 2692.1 1819.3 1115 1067.2 1849.6 2917 1885.8 4566.2 TRUE FALSE 1701.192976 1828.932478 2012.44606 1702.618241 1266.881877 1256.452936 2200.551944 2669.182643 2066.939516 3635.605934 0.467925569 0.503061254 0.553538006 0.468317599 0.348465125 0.345596569 0.605277905 0.734178206 0.56852683 1 11.82798012 -9.143450064 0.696109588 0.994845234 0.456692296 0.74001002 0.093595586 0.489388183 0.523746193 0.103346763 0.039908241 7.19E-10 9.143450064 -0.538152938 CSDVSELS(ph)SSPPGPYHQEPYVCKPEER ddPTM_K562_Paclitaxel_30min_R1 2 CSDVSELSSSPPGPYHQEPYVCKPEER 27 1 Q9Y478;F5H610;F5H2X8 Q9Y478 PRKAB1 5-AMP-activated protein kinase subunit beta-1 1 CS(0.065)DVS(0.224)ELS(0.487)S(0.111)S(0.111)PPGPY(0.001)HQEPYVCKPEER;CS(0.004)DVS(0.031)ELS(0.672)S(0.146)S(0.146)PPGPY(0.001)HQEPYVCKPEER 94.456 1.21E-06 291742000 1870.71 1626.11 2802.7 1748.96 1314.39 1204.3 1392.61 2245.65 1701.63 2741.2 TRUE FALSE 1896.905712 1803.654189 2095.123722 1636.789534 1493.432171 1417.865696 1656.850478 2054.868016 1865.079165 2182.541935 0.869126811 0.826400703 0.959946605 0.74994643 0.684262761 0.649639612 0.759137981 0.941502192 0.854544481 1 11.09179366 -8.262970087 24.97719095 0.92351751 0.783291491 0.357061402 0.089848894 181.9427942 2968768.935 0.05164827 0.026914001 5.46E-09 8.262970087 -0.140226019 CSDVSELSS(ph)SPPGPYHQEPYVCKPEER ddPTM_K562_Paclitaxel_30min_R1 3 CSDVSELSSSPPGPYHQEPYVCKPEER 27 1 Q9Y478;F5H610;F5H2X8 Q9Y478 PRKAB1 5-AMP-activated protein kinase subunit beta-1 1 CSDVS(0.002)ELS(0.108)S(0.442)S(0.442)PPGPY(0.005)HQEPYVCKPEER;CS(0.001)DVS(0.005)ELS(0.088)S(0.421)S(0.421)PPGPY(0.063)HQEPYVCKPEER;CS(0.004)DVS(0.071)ELS(0.179)S(0.523)S(0.221)PPGPY(0.002)HQEPYVCKPEER 65.213 0.00076313 287473000 2547.76 2000.92 4092.25 2717.38 1909.02 2163.41 1816.8 2438.3 2702.52 3467.13 TRUE FALSE 2583.436501 2219.387212 3059.110875 2543.099409 2169.060844 2547.060388 2161.528316 2231.151196 2962.109121 2760.527003 0.935849024 0.803972289 1.10816191 0.921236926 0.785741578 0.922671789 0.783012922 0.808233788 1.073023056 1 11.430728 -4.903466641 20.11686216 0.902560091 3.8510071 0 0.113195702 4701.397812 1003921.37 0.027119067 15668.43975 1.25E-05 4.903466641 2.948447009 CSGPGLS(ph)PGMVR ddPTM_K562_Paclitaxel_30min_R1 4 CSGPGLSPGMVR 12 0 A0A087WWY3;Q60FE5;P21333-2;P21333 A0A087WWY3 FLNA Filamin-A 1 CSGPGLS(1)PGMVR;CS(0.01)GPGLS(0.99)PGMVR;CSGPGLS(1)PGMVR;CS(0.015)GPGLS(0.985)PGMVR 137.09 0.00022804 1463140000 10193.6 8842.8 11565 10672.6 9283.3 8800.5 9088 9904.5 8475.4 10682 TRUE FALSE 10336.34185 9808.286808 8645.272716 9988.107205 10547.84263 10361.14511 10812.40056 9063.050903 9289.500039 8505.002537 1.215324958 1.153237376 1.016492668 1.174380273 1.240192767 1.218241272 1.271298922 1.065614133 1.092239538 1 13.05409595 -8.386773255 8.424815577 1.05711468 1.179537588 0.436664568 0.068328721 0.345445023 21.99572989 0.04131328 0.019732336 4.10E-09 8.386773255 0.122422908 CSISGHGSLNSIS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 CSISGHGSLNSISR 14 0 B7ZM87;O75044;A0A075B7E9 B7ZM87 SRGAP2 SLIT-ROBO Rho GTPase-activating protein 2 1 CSISGHGSLNS(0.019)IS(0.981)R;CSISGHGS(0.031)LNS(0.016)IS(0.953)R 101.3 0.0064559 16689700 2036.17 2107.93 2394.75 2325.68 1668 1890.21 2126.09 1924.52 1359.48 2959.02 TRUE FALSE 2064.682662 2338.080926 1790.165745 2176.521294 1895.209839 2225.412204 2529.504479 1761.020014 1490.064128 2355.9701 0.876361997 0.992406876 0.759842302 0.923832308 0.804428647 0.94458423 1.073657293 0.747471292 0.63246309 1 11.20210551 CST(ph)PLLHQQYTSR ddPTM_K562_Paclitaxel_30min_R1 2 CSTPLLHQQYTSR 13 0 H0YJG4;Q9HCK8-2;Q9HCK8;A0A2R8Y840 H0YJG4 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 CS(0.101)T(0.899)PLLHQQYTSR;CS(0.08)T(0.92)PLLHQQYTSR 162.31 0.00076571 14238800 2673.3 2241.2 2607.6 2565.9 1703.22 1814.94 1742.75 2495.2 2206.7 2740.3 TRUE FALSE 2710.734448 2485.901795 1949.27913 2401.334659 1935.2274 2136.794126 2073.427715 2283.217185 2418.663395 2181.825356 1.24241587 1.13936791 0.893416663 1.1006081 0.886976308 0.979360754 0.950317911 1.046471102 1.108550411 1 11.09131991 -5.564611809 5.528951113 0.995298404 1.220053037 0.559406584 0.071861625 0.112503307 8.30259057 0.018161599 0.052281192 2.73E-06 5.564611809 0.224754633 CT(ph)CPDQFPMIK ddPTM_K562_Paclitaxel_30min_R1 1 CTCPDQFPMIK 11 0 A0A5E8;Q99501;Q99501-4;Q99501-3;Q99501-2 A0A5E8 GAS2L1 GAS2-like protein 1 1 CT(1)CPDQFPMIK 107.37 0.0060461 6765000 1324.9 1238.9 1470.2 1357 1290.3 1312.3 1254.7 1284.6 895.18 1370.5 TRUE FALSE 1343.452688 1374.167292 1099.029827 1269.968094 1466.060705 1545.017979 1492.772775 1175.465212 981.1660388 1091.191348 1.231179747 1.259327518 1.007183414 1.163836294 1.343541358 1.415900138 1.368021088 1.07723106 0.899169555 1 10.09168839 -10.55702444 6.285471076 1 1.203859158 0.122425516 0.156332464 120433042.6 1.588632962 0.377867397 0.041228713 2.77E-11 10.55702444 0.203859159 CT(ph)QEGRT(ph)S(ph)KDS(ph)GEGPGR ddPTM_K562_Paclitaxel_30min_R1 1 CTQEGRTSKDSGEGPGR 17 2 H7C112;H3BPZ0;Q6PCT2-2;Q6PCT2-3;Q6PCT2 H7C112 FBXL19 F-box/LRR-repeat protein 19 4 CT(1)QEGRT(1)S(1)KDS(1)GEGPGR 58.366 0.026844 50924000 3737.6 2380.3 5787 3853.2 2409 3021.3 2123.2 3038.1 3815.9 3848.7 TRUE FALSE 3789.937931 2640.189204 4326.000277 3606.072998 2737.146585 3557.085134 2526.066116 2779.994442 4182.434245 3064.332827 1.236790566 0.861586959 1.411726637 1.176788946 0.893227576 1.160802476 0.824344566 0.907210345 1.364875972 1 11.58135729 -6.72652442 24.87675539 1.017186956 1.166713933 0.123005472 0.190945908 378.1165174 269404.5763 0.055636454 0.071823039 1.88E-07 6.72652442 0.149526977 CTLPEHES(ph)PSQDISDACEAESTER ddPTM_K562_Paclitaxel_30min_R1 4 CTLPEHESPSQDISDACEAESTER 24 0 Q32MZ4-3;Q32MZ4-2;Q32MZ4 Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 CTLPEHES(0.999)PS(0.001)QDISDACEAESTER;CTLPEHES(0.993)PS(0.006)QDISDACEAESTER;CTLPEHES(0.997)PS(0.003)QDISDACEAESTER;CTLPEHES(0.982)PS(0.018)QDISDACEAESTER 163.95 8.37E-26 105252000 7418.8 6698.7 9550 8314.6 6579.74 6984.36 7713.9 8898.5 4698.52 9691.1 TRUE FALSE 7522.686089 7430.08672 7138.984387 7781.338771 7476.011984 8222.938181 9177.572256 8142.516882 5149.83384 7716.0485 0.974940229 0.962939349 0.925212482 1.00846162 0.968891264 1.06569291 1.1894135 1.055270309 0.667418542 1 12.9136465 -6.285492017 21.91960075 1.006029701 0.955221562 0.013485065 0.125316377 724.7859531 660507.8457 0.036653673 0.054426601 5.18E-07 6.285492017 -0.050808139 CTVFHGAQVEDAFR ddPTM_K562_Paclitaxel_30min_R1 1 CTVFHGAQVEDAFR 14 0 A0A0U1RQF0;P49327 A0A0U1RQF0 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 100.11 0.014497 5202600 1226.6 1234.2 1534.1 1398.2 1262 1208.6 1185.2 1337.1 1191.1 1676.8 FALSE TRUE 1243.776184 1368.95413 1146.797481 1308.52571 1433.905766 1422.92824 1410.085513 1223.505009 1305.510477 1335.06724 0.931620631 1.02538216 0.858981067 0.980119706 1.07403262 1.065810169 1.056190633 0.916436995 0.977861218 1 10.38269669 -6.52240339 24.99988457 1.016526597 0.942702873 0.261224241 0.057500555 25.43456623 1337706.274 0.017969154 0.023477688 3.00E-07 6.52240339 -0.073823723 CVDMQRSRHEERS(ph) ddPTM_K562_Paclitaxel_30min_R1 1 CVDMQRSRHEERS 13 3 F5H235 F5H235 DDX11 1 CVDMQRS(0.021)RHEERS(0.979) 62.528 0.02351 0 366.91 200.6 278.84 314.85 319.62 201.81 127.17 280.29 243.95 336.17 TRUE FALSE 372.047872 222.5021864 208.4433934 294.6569302 363.1576552 237.5981699 151.2998436 256.477615 267.3824875 267.6583695 1.390010231 0.83129172 0.778766581 1.100869481 1.35679544 0.887691913 0.565272231 0.958227518 0.998969276 1 8.064248955 -7.492999413 24.96708012 0.855614141 1.066430789 0.183129095 0.215515264 1256.601345 1050014.348 0.079671569 0.070157451 3.21E-08 7.492999413 0.210816648 CVGAELEYDS(ph)EHSDWHGFD ddPTM_K562_Paclitaxel_30min_R1 2 CVGAELEYDSEHSDWHGFD 19 0 H7BYU9;Q9GZN8;Q9GZN8-2 H7BYU9 C20orf27 UPF0687 protein C20orf27 1 CVGAELEYDS(0.999)EHS(0.001)DWHGFD;CVGAELEYDS(0.982)EHS(0.018)DWHGFD 115.63 0.00012593 23484000 5908.6 5602.1 6689.4 6234 5125 4961.6 5819 6456.2 4915.3 7394.2 TRUE FALSE 5991.33863 6213.756223 5000.578237 5834.179142 5823.111767 5841.470096 6923.124873 5907.705512 5387.436527 5887.257981 1.017678968 1.055458457 0.849390031 0.990984115 0.989104229 0.992222545 1.175950654 1.003473184 0.915101146 1 12.52338013 -7.542567643 24.99753187 1.032515777 0.979250283 0.059780766 0.077873889 645.6634086 819743.3634 0.030796551 0.02385735 2.87E-08 7.542567643 -0.053265494 CVS(ph)VQTDPTDEIPTKK ddPTM_K562_Paclitaxel_30min_R1 1 CVSVQTDPTDEIPTKK 16 1 P18583-6;P18583-2;P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-8 P18583-6 SON Protein SON 1 CVS(0.947)VQT(0.048)DPT(0.003)DEIPT(0.002)KK 66.045 0.02863 12819000 1826.9 1201.5 3411.3 1493.6 892.68 1093.6 1017.5 1203.6 1412.5 2362 TRUE FALSE 1852.482236 1332.683833 2550.075125 1397.807181 1014.278129 1287.534605 1210.565313 1101.346667 1548.176936 1880.623103 0.985036413 0.708639509 1.355973517 0.743268111 0.539330888 0.684631919 0.643704372 0.585628596 0.823225522 1 10.87699503 -6.497916455 24.96972664 0.683005781 0.996402495 0.333990279 0.190800155 775.2236083 775454.7051 0.051243172 0.075609669 3.18E-07 6.497916455 0.313396714 CYEMASHLR ddPTM_K562_Paclitaxel_30min_R1 2 CYEMASHLR 9 0 P07737;K7EJ44;CON__P02584 P07737 PFN1 Profilin-1 0 ; 106.88 0.016136 27550000 5230.1 5309.9 5716 5823.9 4741.3 4010.2 5891.2 7061.5 5263.2 7823.5 FALSE TRUE 5303.337536 5889.652839 4272.925105 5450.381121 5387.145331 4721.352664 7009.024446 6461.581498 5768.753877 6229.066406 0.851385616 0.945511326 0.685965573 0.874991655 0.864839926 0.757955102 1.125212671 1.037327438 0.926102485 1 12.60480024 -7.756822753 24.99994691 1.025271272 0.832420727 0.58166797 0.079758055 83.81457359 453875.4155 0.031163503 0.023318745 1.75E-08 7.756822753 -0.192850545 DAEAEDKT(ph)LRT ddPTM_K562_Paclitaxel_30min_R1 1 DAEAEDKTLRT 11 2 E5RK88 E5RK88 ST18 1 DAEAEDKT(0.999)LRT(0.001) 112.11 0.010342 34769000 0 0 143.69 68.557 0 0 0 64.852 0 0 TRUE FALSE 0 0 107.4136824 64.16006087 0 0 0 59.34241781 0 0 0 DAEDDGEEEDD ddPTM_K562_Paclitaxel_30min_R1 1 DAEDDGEEEDD 11 0 H0YCE2;Q5TB25;Q5TB19;Q9BTT0-3;Q9BTT0-2;Q9BTT0 H0YCE2 ANP32E Acidic leucine-rich nuclear phosphoprotein 32 family member E 0 164.72 0.0039268 1572100 2802.9 2224.9 3270.7 2506.2 2294 2007.4 1990.2 2640.4 2461 2800.4 FALSE TRUE 2842.149248 2467.822106 2444.971333 2345.463549 2606.481638 2363.384205 2367.83006 2416.081539 2697.390046 2229.676943 1.274691052 1.106807026 1.096558558 1.051929768 1.168995197 1.059967101 1.061961047 1.083601616 1.209767206 1 11.12261898 -5.258811866 4.200851186 1.094079443 1.289516505 0.482462877 0.056511927 0.187318793 7.493072052 0.013555296 0.110741077 5.51E-06 5.258811866 0.195437062 DAGLLVEQPPLAGVAAS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 DAGLLVEQPPLAGVAASPR 19 0 Q13469-3;Q13469-4;Q13469-2;Q13469 Q13469-3 NFATC2 "Nuclear factor of activated T-cells, cytoplasmic 2" 1 DAGLLVEQPPLAGVAAS(1)PR;DAGLLVEQPPLAGVAAS(1)PR 202.43 1.97E-19 130871000 5238.9 4488.5 5262.1 4791.9 3539.2 3513.9 4947.8 5802.2 6859.6 6714 TRUE FALSE 5312.260763 4978.569609 3933.617774 4484.568982 4021.298959 4137.040827 5886.619221 5309.266894 7518.49523 5345.683115 0.993747787 0.93132524 0.735849412 0.838914108 0.752251653 0.773903117 1.101191203 0.993187733 1.406461077 1 12.3841586 -7.801624259 7.281904481 1.126640041 0.833525091 0.541974712 0.129490082 0.165735064 23.63815042 0.054054209 0.036760334 1.58E-08 7.801624259 -0.29311495 DALDLSDINSEPPRGS(ph)FPSFEPR ddPTM_K562_Paclitaxel_30min_R1 2 DALDLSDINSEPPRGSFPSFEPR 23 1 Q99640-3;Q99640-4;Q99640 Q99640-3 PKMYT1 Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase 1 DALDLS(0.001)DINSEPPRGS(0.935)FPS(0.064)FEPR;DALDLSDINSEPPRGS(0.808)FPS(0.192)FEPR 84.946 0.00035921 61940000 1108.97 1251.36 1338.97 1061.82 928.29 919.61 958.89 1209.52 1051.17 1400.66 TRUE FALSE 1124.499001 1387.987717 1000.930463 993.7196177 1054.738814 1082.689922 1140.834372 1106.763726 1152.139575 1115.204723 1.008334145 1.244603513 0.897530689 0.89106475 0.94578044 0.970844096 1.022982012 0.992430989 1.033119347 1 10.12309286 -5.77234096 24.99987132 0.967298545 1.12646886 0.450612292 0.069426559 162.5520439 372772.0542 0.018208007 0.03849743 1.69E-06 5.77234096 0.159170315 DANIMS(ph)PGSSLPSLHVR ddPTM_K562_Paclitaxel_30min_R1 1 DANIMSPGSSLPSLHVR 17 0 P25054-2;P25054-3;P25054;A0A2Q2SV78;E9PFT7 P25054-2 APC Adenomatous polyposis coli protein 1 DANIMS(0.999)PGSSLPSLHVR 91.276 0.0042007 6235500 3157.9 2672 4097.1 3062.3 2994.4 2460.8 2751 3028.9 3115.1 3849.3 TRUE FALSE 3202.120343 2963.737996 3062.736433 2865.897784 3402.287976 2897.188329 3272.987889 2771.576039 3414.319274 3064.810547 1.04480205 0.967021599 0.999323249 0.93509786 1.110113635 0.945307478 1.067925028 0.904322142 1.11403926 1 11.58158218 DANIMSPGS(ph)SLPSLHVR ddPTM_K562_Paclitaxel_30min_R1 1 DANIMSPGSSLPSLHVR 17 0 P25054-2;P25054-3;P25054;A0A2Q2SV78;E9PFT7 P25054-2 APC Adenomatous polyposis coli protein 1 DANIMS(0.239)PGS(0.375)S(0.375)LPS(0.011)LHVR 77.324 0.0224 0 648.57 617.9 924.46 686.21 653.33 680 717.51 966.13 506.12 794.67 TRUE FALSE 657.651981 685.3644116 691.0686394 642.199562 742.324607 800.5884523 853.6537768 884.0512261 554.7350874 632.7158178 1.039411316 1.083210491 1.092225957 1.014988947 1.173235418 1.265320749 1.349189878 1.397232693 0.876752361 1 9.305413853 -6.904868289 5.257422458 1.213863804 1.062580046 0.111809816 0.147730272 0.361528287 16.0176902 0.045998924 0.052429404 1.24E-07 6.904868289 -0.151283758 DAPTS(ph)PASVASSSSTPSSK ddPTM_K562_Paclitaxel_30min_R1 2 DAPTSPASVASSSSTPSSK 19 0 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726;A0A0D9SES8 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 DAPT(0.068)S(0.931)PASVASSSSTPSSK;DAPT(0.046)S(0.883)PAS(0.065)VAS(0.003)S(0.002)SSTPSSK 132.87 3.29E-09 126120000 6607 5471.6 11630.3 7061.1 5308.5 4474.1 4577.3 6865.5 5738.1 7419 TRUE FALSE 6699.518384 6069.007792 8694.086923 6608.23265 6031.607574 5267.518816 5445.81878 6282.232922 6289.270144 5907.003728 1.134165254 1.02742576 1.47182689 1.118711441 1.021094256 0.891741238 0.92192574 1.063522762 1.064714098 1 12.52821081 -6.674866971 3.80395769 0.987213142 1.205769062 0.412413101 0.116455986 0.230337585 6.410974007 0.036991208 0.047964809 2.11E-07 6.674866971 0.21855592 DAQHYGGWEHR ddPTM_K562_Paclitaxel_30min_R1 2 DAQHYGGWEHR 11 0 F5H6X6;Q14697;Q14697-2;E9PKU7 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 ; 110.64 0.0042615 8701000 3436.3 3889.2 4636.2 4004.4 3626.2 3796.4 3608 4783.7 2721.2 5697.4 FALSE TRUE 3484.418802 4313.836008 3465.73397 3747.575707 4120.149832 4469.638236 4292.599165 4377.294826 2982.583419 4536.266753 0.768124758 0.950966123 0.764005769 0.826136537 0.90826886 0.985312037 0.946284555 0.96495534 0.657497361 1 12.14728976 -6.778765925 7.748734488 0.914360273 0.831544221 0.135314004 0.102386831 0.346773383 103.3378724 0.031074671 0.036400782 1.66E-07 6.778765925 -0.082816052 DAS(ph)VPLIDVTNLPTPR ddPTM_K562_Paclitaxel_30min_R1 2 DASVPLIDVTNLPTPR 16 0 Q96A65-2;Q96A65 Q96A65-2 EXOC4 Exocyst complex component 4 1 DAS(1)VPLIDVTNLPTPR;DAS(1)VPLIDVTNLPTPR 161.86 2.18E-07 13663600 4111.1 4099.5 5393.3 4585.3 3557.2 4065.2 4328.5 5527.7 3165.5 6155 TRUE FALSE 4168.668084 4547.097274 4031.694712 4291.219381 4041.750864 4786.106142 5149.810279 5058.087382 3469.560419 4900.607621 0.850643105 0.927863976 0.822692822 0.875650473 0.824744843 0.976635248 1.050851379 1.032134742 0.707985762 1 12.25874492 -7.269915169 24.3754534 0.961612975 0.86283294 0.197895391 0.093041207 737.4163116 2120721.052 0.032501721 0.029136915 5.37E-08 7.269915169 -0.098780035 DASGPS(ph)DS(ph)DMPSRT(ph)RPK ddPTM_K562_Paclitaxel_30min_R1 1 DASGPSDSDMPSRTRPK 17 2 C9JDJ7 C9JDJ7 U2SURP 3 DAS(0.377)GPS(0.642)DS(0.981)DMPS(0.034)RT(0.967)RPK 59.618 0.028572 0 0 0 155.14 0 0 0 0 0 0 0 TRUE FALSE 0 0 115.9729883 0 0 0 0 0 0 0 0 DASVPLIDVTNLPT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 DASVPLIDVTNLPTPR 16 0 Q96A65-2;Q96A65 Q96A65-2 EXOC4 Exocyst complex component 4 1 DASVPLIDVTNLPT(1)PR;DASVPLIDVTNLPT(1)PR;DASVPLIDVTNLPT(1)PR 216.71 1.10E-22 34520300 3750.74 3730.4 3989 3301.06 2827.41 3150.61 3173.07 4138.9 3629.33 5174.3 TRUE FALSE 3803.261932 4137.697687 2981.927615 3089.344787 3212.55111 3709.326447 3775.143468 3787.274611 3977.943363 4119.77482 0.923172285 1.004350448 0.723808399 0.749881953 0.779788035 0.900371163 0.916347042 0.919291655 0.965573007 1 12.00834977 -7.716860917 2.015026373 0.952163193 0.835709702 0.310544679 0.080081657 0.487302322 4.05187091 0.044254761 0.029298582 1.92E-08 7.716860917 -0.11645349 DCGATWVVLGHSER ddPTM_K562_Paclitaxel_30min_R1 2 DCGATWVVLGHSER 14 0 P60174;P60174-3;U3KPS5;U3KQF3;U3KPZ0;P60174-4 P60174 TPI1 Triosephosphate isomerase 0 ; 108.97 0.0073655 20472500 4163.1 4186.9 5303.6 4726.2 3988.4 4154.9 4809.8 6328.9 3381.8 7383.7 FALSE TRUE 4221.396244 4644.039901 3964.640586 4423.082686 4531.687604 4891.713177 5722.434441 5791.220441 3706.637 5878.897887 0.71805912 0.789950768 0.674385006 0.752365966 0.770839652 0.83207997 0.973385582 0.985086074 0.630498619 1 12.52133 -7.319795897 2.556542445 0.895936191 0.736852435 0.343352686 0.101918771 0.340404245 4.377965675 0.038757894 0.034518107 4.79E-08 7.319795897 -0.159083757 DCLIEDS(ph)DDEAGQS ddPTM_K562_Paclitaxel_30min_R1 4 DCLIEDSDDEAGQS 14 0 H3BSW6;Q2VPK5-3;Q2VPK5;H3BPG4 H3BSW6 CTU2 Cytoplasmic tRNA 2-thiolation protein 2 1 DCLIEDS(1)DDEAGQS;DCLIEDS(1)DDEAGQS;DCLIEDS(1)DDEAGQS;DCLIEDS(1)DDEAGQS 202.18 1.71E-09 97758700 17189.5 16151.4 22701.9 18460.3 15381.5 14494.3 14177 19015.4 15740 19574.8 TRUE FALSE 17430.20603 17914.86447 16970.52457 17276.33898 17476.72071 17064.66059 16867.01174 17399.92308 17251.89733 15585.44502 1.118364347 1.149461209 1.088870068 1.108491863 1.121348841 1.094910064 1.082228433 1.116421319 1.106923627 1 13.92791173 -15 0.242745263 0.36726745 1.120020289 0.783666515 0.017451424 80.74954961 0.805101659 25.26096857 0.02804551 1.00E-15 15 0.75275284 DCMLMSHLEEPK ddPTM_K562_Paclitaxel_30min_R1 1 DCMLMSHLEEPK 12 0 E7EMB7;Q9UI26;Q9UI26-2 E7EMB7 IPO11 Importin-11 0 85.924 0.01259 28317000 2566.5 3117 2847 3078 2772.8 2546.6 3015.7 3266.5 3235.1 3265.3 FALSE TRUE 2602.438918 3457.324601 2128.239639 2880.590857 3150.502304 2998.203754 3587.913332 2988.990436 3545.84581 2599.830068 1.00100347 1.329827147 0.81860721 1.107991977 1.211810858 1.153230664 1.380056865 1.149686848 1.363875991 1 11.34420161 -6.706408466 4.233047521 1.223862243 1.061597568 0.175921318 0.154883057 0.355746151 13.02434024 0.04543696 0.057986096 1.97E-07 6.706408466 -0.162264675 DDEKEAEEGEDDRDS(ph)ANGEDDS ddPTM_K562_Paclitaxel_30min_R1 1 DDEKEAEEGEDDRDSANGEDDS 22 2 G3V2D6;G3V4C1;P07910-4;P07910-2;P07910-3;G3V2Q1;P07910 G3V2D6;G3V2Q1 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 DDEKEAEEGEDDRDS(0.539)ANGEDDS(0.461) 60.814 0.017892 0 1465.2 989.24 3193.1 2214.1 1342.2 969.92 1049.3 2106.5 1065.4 2497.4 TRUE FALSE 1485.717321 1097.248569 2386.962413 2072.097536 1525.030364 1141.921694 1248.399197 1927.539677 1167.73643 1988.428509 0.747181663 0.551816957 1.200426569 1.042077966 0.766952574 0.574283505 0.627832075 0.969378415 0.587265987 1 10.95741298 -6.976963392 24.39647382 0.734151432 0.886611544 0.08334495 0.209433014 443.5138113 469691.4871 0.067742731 0.076808124 1.05E-07 6.976963392 0.152460112 DDLQRLQEVLQS(ph)ESDQLK ddPTM_K562_Paclitaxel_30min_R1 1 DDLQRLQEVLQSESDQLK 18 1 A0A087X0P0;Q02224-3;Q02224 A0A087X0P0 CENPE Kinesin-like protein;Centromere-associated protein E 1 DDLQRLQEVLQS(0.68)ES(0.32)DQLK 71.735 0.01514 50697000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 DDQIINWLLEFRSSIMY(ph)LT(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 DDQIINWLLEFRSSIMYLTK 20 1 H3BMT1;Q9NYV6-2;A6NIE6;Q9NYV6-3;Q9NYV6 H3BMT1 RRN3;RRN3P2 RNA polymerase I-specific transcription initiation factor RRN3;Putative RRN3-like protein RRN3P2 2 DDQIINWLLEFRS(0.016)S(0.117)IMY(0.895)LT(0.971)K 47.222 0.025647 61133000 1853.9 1454 2450.5 1852.3 1256.3 1556.5 1176.8 1362.6 1405.9 2080.5 TRUE FALSE 1879.86032 1612.752637 1831.840968 1733.501769 1427.429329 1832.523421 1400.091657 1246.838625 1540.942977 1656.492958 1.134843532 0.973594623 1.105854968 1.046489066 0.861717717 1.106266955 0.845214373 0.752697812 0.930244206 1 10.69391635 -7.10452413 0.897425256 0.875780622 1.069523441 0.322082531 0.099736895 0.654240185 1.148403354 0.057672108 0.062973019 7.86E-08 7.10452413 0.193742819 DDS(ph)IISS(ph)LDVT(ph)DIAPSRKRR ddPTM_K562_Paclitaxel_30min_R1 1 DDSIISSLDVTDIAPSRKRR 20 3 Q13426;Q13426-2;Q13426-3 Q13426 XRCC4 DNA repair protein XRCC4 3 DDS(0.772)IIS(0.419)S(0.809)LDVT(0.736)DIAPS(0.264)RKRR 57.692 0.017686 68487000 1098.6 1027.9 996.77 1054 881.48 830.66 1101.2 908.04 718.25 1269 TRUE FALSE 1113.983789 1140.129598 745.1230856 986.4011575 1001.5525 977.965888 1310.146951 830.8963342 787.2411217 1010.377103 1.102542591 1.128419868 0.73747028 0.9762703 0.991266029 0.967921665 1.296691054 0.822362593 0.779155742 1 9.980678136 DEALQNIS(ph)ADDLPDSASQAAHPQDSAFSYR ddPTM_K562_Paclitaxel_30min_R1 2 DEALQNISADDLPDSASQAAHPQDSAFSYR 30 0 Q14C86-4;Q14C86-2;Q14C86-6;F8W9S7;Q14C86-3;Q14C86-5;Q14C86 Q14C86-4 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 DEALQNIS(1)ADDLPDSASQAAHPQDSAFSYR;DEALQNIS(0.995)ADDLPDS(0.004)AS(0.001)QAAHPQDSAFSYR 104.55 2.87E-09 83298000 1082.86 1217.11 1330.1 958.31 1127.36 966.29 954.44 1239 648.5 1383.48 TRUE FALSE 1098.023381 1349.998186 994.2998045 896.8482858 1280.925518 1137.647964 1135.540007 1133.739216 710.7913226 1101.526017 0.996820197 1.225570858 0.902656669 0.814187112 1.162864516 1.032792641 1.030878972 1.029244157 0.645278742 1 10.10528785 -8.717033289 24.96975158 0.822639088 1.025133387 0.262994746 0.135080623 148.1694476 83316.42201 0.089818373 0.033947758 1.92E-09 8.717033289 0.2024943 DEDMLYS(ph)PELAQR ddPTM_K562_Paclitaxel_30min_R1 2 DEDMLYSPELAQR 13 0 Q9Y2W2 Q9Y2W2 WBP11 WW domain-binding protein 11 1 DEDMLYS(1)PELAQR;DEDMLYS(1)PELAQR 233.28 2.91E-32 37262000 3586.8 3993.2 5545.4 4827 4262 3332.9 3650.8 4437 3771.9 5187.2 TRUE FALSE 3637.026266 4429.19108 4145.395185 4517.417825 4842.556556 3923.943019 4343.520242 4060.049155 4134.207848 4130.045793 0.880626136 1.07243147 1.003716519 1.093793641 1.172518853 0.950096734 1.051688155 0.98305185 1.00100775 1 12.01194206 -10.88033874 14.35297894 1 1.028061487 0.004624961 0.07673441 0 0 0.073856406 0.01791281 1.32E-11 10.88033874 0.028061487 DEGEGAAGAGDHKDPSLGAGEAAS(ph)KESEPK ddPTM_K562_Paclitaxel_30min_R1 1 DEGEGAAGAGDHKDPSLGAGEAASKESEPK 30 2 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 1 DEGEGAAGAGDHKDPS(0.094)LGAGEAAS(0.453)KES(0.453)EPK 40.104 0.026243 74639000 662.54 755.64 569.92 644.41 744.77 832.52 813.13 656.5 895.29 852.79 TRUE FALSE 671.8176041 838.1433306 426.0366473 603.0804269 846.2202831 980.1557328 967.4171727 600.7262273 981.2866048 678.9909299 0.989435314 1.234395474 0.627455579 0.888201006 1.246290997 1.443547608 1.424786592 0.884733802 1.445213127 1 9.407248493 -6.767579856 24.16606561 1.254339306 0.934308065 0.312318713 0.221815725 118.2372747 465326.4718 0.069075589 0.080376301 1.71E-07 6.767579856 -0.320031241 DEILEWESRVTQYERDFER ddPTM_K562_Paclitaxel_30min_R1 1 DEILEWESRVTQYERDFER 19 2 H0YK42;Q13596-2;Q13596;Q13596-3 H0YK42 SNX1 Sorting nexin-1 0 36.451 0.02955 1127900 403 254.4 516.87 375.07 268.23 292.1 224.48 298.89 556.54 272.99 FALSE TRUE 408.6432434 282.1762523 386.3797759 351.014689 304.7674672 343.8998337 267.0739081 273.4974289 609.9981537 217.3544882 1.880077319 1.298230622 1.777648022 1.614941067 1.402167812 1.582207189 1.228748071 1.258301272 2.806466795 1 7.763906076 -6.550890053 24.60919739 1.541819941 1.62989082 0.009421601 0.478210744 1632.309675 1434047.306 0.137662629 0.177725113 2.81E-07 6.550890053 0.088070878 DEILPT(ph)TPISEQK ddPTM_K562_Paclitaxel_30min_R1 1 DEILPTTPISEQK 13 0 E9PSF4;E9PPU1;H0YEU2;E9PL09;P23396;P23396-2 E9PSF4 RPS3 40S ribosomal protein S3 1 DEILPT(0.83)T(0.165)PIS(0.005)EQK 191.01 0.00023036 223040000 6063.3 5020.8 11178 7594.7 4994.7 4161.6 4270.2 7222.7 3352.1 8668.1 TRUE FALSE 6148.204907 5568.987923 8355.975652 7107.609935 5675.062701 4899.601328 5080.448158 6609.086552 3674.084183 6901.536462 0.89084582 0.806920018 1.210741361 1.029859072 0.822289751 0.709929065 0.736132916 0.957625391 0.532357425 1 12.75270186 -6.857093357 5.231578549 0.780294954 0.987413442 0.267359844 0.155601165 0.278274879 12.17291758 0.048450745 0.055591181 1.39E-07 6.857093357 0.207118488 DEILPTT(ph)PISEQK ddPTM_K562_Paclitaxel_30min_R1 1 DEILPTTPISEQK 13 0 E9PSF4;E9PPU1;H0YEU2;E9PL09;P23396;P23396-2 E9PSF4 RPS3 40S ribosomal protein S3 1 DEILPT(0.312)T(0.675)PIS(0.012)EQK 127.3 0.0017974 248700000 8144.5 6613.9 16056 9321.8 6801.2 5500.5 5629.9 10400 4387.5 12397 TRUE FALSE 8258.548128 7336.027969 12002.46422 8723.941471 7727.638585 6475.936444 6698.144135 9516.455085 4808.938979 9870.484595 0.836691253 0.743228754 1.215995436 0.883841253 0.782903667 0.656091034 0.678603373 0.96413251 0.487203939 1 13.2689052 -6.745082325 4.067814822 0.74830218 0.932104064 0.160648515 0.1783543 0.36687873 13.56701701 0.054161451 0.067404343 1.80E-07 6.745082325 0.183801885 DELHIVEAEAMNYEGS(ph)PIKVTLATLK ddPTM_K562_Paclitaxel_30min_R1 1 DELHIVEAEAMNYEGSPIKVTLATLK 26 1 P06748-2;P06748;P06748-3 P06748-2 NPM1 Nucleophosmin 1 DELHIVEAEAMNY(0.181)EGS(0.785)PIKVT(0.023)LAT(0.011)LK 54.626 0.0080201 6790200 510.65 524.38 660.2 538.02 312.07 371.45 526.99 676.34 284.67 1510.7 TRUE FALSE 517.8006755 581.6335817 493.5243447 503.5138053 354.5792174 437.3214421 626.9836014 618.8806954 312.0138254 1202.818511 0.430489447 0.483558888 0.410306576 0.41861162 0.29479029 0.363580572 0.521262016 0.514525417 0.259402248 1 10.23220326 -11.66917563 2.724285576 1.073447916 0.414594604 0.822428484 0.082126445 22726621.95 20206908.5 11606405.48 0.022023591 2.14E-12 11.66917563 -0.658853312 DERS(ph)DSRAQAVSEDAGGNEGR ddPTM_K562_Paclitaxel_30min_R1 1 DERSDSRAQAVSEDAGGNEGR 21 2 P55884-2;P55884;C9JZG1 P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B 1 DERS(0.849)DS(0.151)RAQAVSEDAGGNEGR 84.166 0.00073003 10385000 939.2 798.58 882.48 783.41 729.21 781.02 599.66 984.08 1686.4 964.89 TRUE FALSE 952.3516977 885.771665 659.6870096 733.165589 828.5407476 919.5229309 713.4423546 900.4762616 1848.386255 768.2448884 1.239645993 1.152980877 0.858693653 0.954338389 1.078485207 1.196913829 0.92866528 1.172121384 2.405985751 1 9.585422452 -8.550215015 24.99877549 1.731680729 1.056120189 0.365705554 0.334516402 199.4112643 182356.0685 0.204859572 0.077433253 2.82E-09 8.550215015 -0.675560541 DEVVS(ph)PLPSALQGPSGSLSAPPAASVISAPPSSSSR ddPTM_K562_Paclitaxel_30min_R1 1 DEVVSPLPSALQGPSGSLSAPPAASVISAPPSSSSR 36 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 DEVVS(0.957)PLPS(0.025)ALQGPS(0.009)GS(0.01)LSAPPAASVISAPPSSSSR 71.341 3.02E-06 17609000 1122.9 1044.1 1519.7 1241.8 946.27 1210.6 990.8 1192.7 722.26 1565.7 TRUE FALSE 1138.624064 1158.098369 1136.03294 1162.156506 1075.167994 1425.282912 1178.799128 1091.37269 791.6363001 1246.609481 0.913376709 0.928998525 0.911298171 0.932253865 0.862473783 1.143327509 0.945604174 0.875472798 0.635031509 1 10.28379387 -8.52458176 24.98920475 0.796761214 0.946836689 0.1909657 0.107751185 79.46148297 1165861.83 0.068887382 0.026442724 2.99E-09 8.52458176 0.150075474 DFAVLEDHTLAHS(ph)LQEQEIEHHLASNVQR ddPTM_K562_Paclitaxel_30min_R1 1 DFAVLEDHTLAHSLQEQEIEHHLASNVQR 29 0 Q8IVM0;Q8IVM0-2 Q8IVM0 CCDC50 Coiled-coil domain-containing protein 50 1 DFAVLEDHT(0.25)LAHS(0.75)LQEQEIEHHLASNVQR 44.164 0.01401 7458600 627.9 526.66 808.88 452.62 444.08 524.31 630.48 708.47 792.53 643.56 TRUE FALSE 636.6925372 584.1625198 604.6682399 423.5909791 504.5712143 617.2890168 750.1102887 648.2810514 868.6560476 512.4021187 1.242564217 1.140047042 1.180065846 0.826676869 0.984717268 1.204696457 1.46390942 1.265180271 1.695262404 1 9.001132631 -7.548066174 4.815563672 1.376211317 1.071638743 0.315365096 0.194176228 0.217930505 12.92767343 0.073648629 0.058072462 2.83E-08 7.548066174 -0.304572574 DFGEEHPFYDR ddPTM_K562_Paclitaxel_30min_R1 1 DFGEEHPFYDR 11 0 Q68CQ4 Q68CQ4 DIEXF Digestive organ expansion factor homolog 0 107.11 0.012448 10670000 3420.8 3138 4669.5 3717.4 2507 2631 2786.8 3647.6 2750.7 4050.9 FALSE TRUE 3468.701754 3480.617452 3490.626973 3478.982602 2848.495844 3097.570909 3315.580752 3337.713612 3014.917025 3225.324356 1.07545827 1.079152689 1.082256104 1.07864581 0.8831657 0.960390512 1.027983665 1.034845877 0.934763978 1 11.65522854 -6.671142495 15.99030305 0.977336403 1.079200961 0.604416526 0.04168607 1.084665928 189.4185628 0.013021173 0.016810114 2.13E-07 6.671142495 0.101864558 DFPTAFLS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 DFPTAFLSR 9 0 A0JNW5-2 A0JNW5-2 UHRF1BP1L UHRF1-binding protein 1-like 1 DFPTAFLS(1)R;DFPTAFLS(1)R 87.806 0.020474 82470000 8071.3 9199.3 8144.3 8900.3 9413.7 8689.8 9073.3 9752.5 9600.6 9660.6 TRUE FALSE 8184.323102 10203.71068 6088.170738 8329.474594 10696.00532 10230.81402 10794.91131 8923.964252 10522.78053 7691.764417 1.064037152 1.326576079 0.791518097 1.082908178 1.390578902 1.330099762 1.403437589 1.160197293 1.368058089 1 12.90909886 -6.697659219 8.32233039 1.29233634 1.06399054 0.272727031 0.165991082 0.341265265 39.8627803 0.047959226 0.061834274 2.01E-07 6.697659219 -0.2283458 DFQDYMEPEEGCQGS(ph)PQR ddPTM_K562_Paclitaxel_30min_R1 1 DFQDYMEPEEGCQGSPQR 18 0 O43237-2;O43237;H3BUM4;B4E2E0 O43237-2 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 DFQDYMEPEEGCQGS(1)PQR 108.97 0.00071881 21288000 2967.1 3034.3 2954.5 2990 2591.1 2315 2866.4 3174.7 2053.7 3515.8 TRUE FALSE 3008.648554 3365.595135 2208.599934 2798.234783 2944.051688 2725.532746 3410.284436 2904.989419 2250.967061 2799.27803 1.074794473 1.202308273 0.788989129 0.999627316 1.051718213 0.973655606 1.218272855 1.037763805 0.804124148 1 11.45083907 DFQDYMEPEEGCQGS(ph)PQRR ddPTM_K562_Paclitaxel_30min_R1 4 DFQDYMEPEEGCQGSPQRR 19 1 O43237-2;O43237;H3BUM4;B4E2E0 O43237-2 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR;DFQDYMEPEEGCQGS(1)PQRR 114.92 0.00011476 135932000 6279.7 6461.3 8960.6 7773.4 6579.1 5633.4 6312.2 8704 5431.5 9404.5 TRUE FALSE 6367.635175 7166.766585 6698.385707 7274.848916 7475.284805 6632.404393 7509.906998 7964.540871 5953.219844 7487.857738 0.850394785 0.957118422 0.894566369 0.971552769 0.998320891 0.885754594 1.002944669 1.063660816 0.795049806 1 12.87033731 -3.927883166 0.865696064 0.960058018 1.65E-10 0.145307291 0.072531941 37.90608264 3.56008775 0.023798445 57.95216833 0.000118064 3.927883166 -0.960058018 DFQEYVEPGEDFPAS(ph)PQR ddPTM_K562_Paclitaxel_30min_R1 2 DFQEYVEPGEDFPASPQR 18 0 Q9Y6G9;C9JGM7;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 DFQEYVEPGEDFPAS(1)PQR;DFQEYVEPGEDFPAS(1)PQR 124.18 5.96E-06 14103100 1706.69 1537.57 2481.58 1836.16 1762.19 1415.48 1777.46 2049.19 1045.77 2280 TRUE FALSE 1730.588926 1705.447092 1855.074437 1718.396916 2002.230112 1666.495504 2114.723756 1875.098519 1146.220881 1815.334748 0.953316697 0.939467001 1.021891108 0.946600575 1.102953664 0.918010028 1.164922204 1.032921625 0.631410202 1 10.82601989 -8.719978251 24.99222576 0.815703798 1.011136561 0.33127994 0.110416072 133.2282811 80308.35922 0.069841101 0.026396896 1.91E-09 8.719978251 0.195432764 DFQEYVEPGEDFPAS(ph)PQRR ddPTM_K562_Paclitaxel_30min_R1 6 DFQEYVEPGEDFPASPQRR 19 1 Q9Y6G9;C9JGM7;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 DFQEYVEPGEDFPAS(1)PQRR;DFQEYVEPGEDFPAS(1)PQRR;DFQEYVEPGEDFPAS(1)PQRR;DFQEYVEPGEDFPAS(1)PQRR;DFQEYVEPGEDFPAS(1)PQRR;DFQEYVEPGEDFPAS(1)PQRR 139.38 9.12E-13 953730000 10429.21 10692.16 14324.9 12039.9 10486.8 9944.47 9976.48 12554.3 8295.7 14319.9 TRUE FALSE 10575.25112 11859.56619 10708.40183 11267.7147 11915.2797 11707.98213 11869.465 11487.73385 9092.539051 11401.49652 0.927531846 1.040176276 0.9392102 0.988266293 1.045062785 1.026881174 1.041044479 1.007563685 0.797486456 1 13.47693558 -8.704266508 24.99983435 0.898741982 1.004261906 0.322591797 0.059758698 75.18663573 32876.43313 0.037996822 0.014361424 1.98E-09 8.704266508 0.105519924 DFS(ph)LEQLR ddPTM_K562_Paclitaxel_30min_R1 1 DFSLEQLR 8 0 O15173;O15173-2 O15173 PGRMC2 Membrane-associated progesterone receptor component 2 1 DFS(1)LEQLR 93.058 0.015476 4839200 1342.5 1329.5 1719.1 1231.3 1076.7 1153.9 1167.2 1415 1219.4 1680.3 TRUE FALSE 1361.299142 1474.659306 1285.091943 1152.329929 1223.364769 1358.527963 1388.670107 1294.786918 1336.528818 1337.853938 1.017524487 1.102257328 0.960562216 0.861327157 0.914423267 1.015453126 1.037983346 0.967808878 0.999009519 1 10.3857049 -5.77573091 24.95383779 0.966667782 1.059890905 0.324116608 0.05203604 246.2144076 429905.7463 0.015103495 0.031668668 1.68E-06 5.77573091 0.093223123 DFSASYFSGEQEVT(ph)PSR ddPTM_K562_Paclitaxel_30min_R1 1 DFSASYFSGEQEVTPSR 17 0 P49454 P49454 CENPF Centromere protein F 1 DFSASYFSGEQEVT(0.999)PS(0.001)R 188.58 7.67E-83 0 823.95 811.24 1106.1 829.94 827.87 565.46 774.68 948.61 823.27 1178.3 TRUE FALSE 835.4878421 899.8139266 826.8513749 776.7113631 940.63991 665.7363915 921.6714859 868.0196595 902.348762 938.1618132 0.890558356 0.959124443 0.881352623 0.827907672 1.002641439 0.709617874 0.982422726 0.925234482 0.96182636 1 9.873692969 DFSASYFSGEQEVTPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 DFSASYFSGEQEVTPSR 17 0 P49454 P49454 CENPF Centromere protein F 1 DFSASYFSGEQEVT(0.443)PS(0.557)R 199.61 2.04E-13 11753000 810.45 906.97 871.55 882.38 578.91 683.51 772.14 551.19 608.36 902.34 TRUE FALSE 821.7988005 1005.996052 651.5164233 825.7880962 657.767343 804.7209015 918.6495342 504.3629691 666.7956962 718.4426127 1.143861439 1.400245523 0.906845462 1.149414138 0.915546115 1.120090718 1.278667938 0.702022625 0.928112677 1 9.488729112 -4.776623742 0.30600815 0.929157322 1.600620324 0.196335778 0.173689662 16.37414974 0.993399369 0.192029071 4.333919116 1.67E-05 4.776623742 0.671463002 DFTVSAMHGDMDQKER ddPTM_K562_Paclitaxel_30min_R1 2 DFTVSAMHGDMDQKER 16 1 J3QL52;J3KSZ0;J3KT12;P60842-2;P60842 J3QL52 EIF4A1 Eukaryotic initiation factor 4A-I 0 ; 148.62 1.14E-07 66094000 9407.5 7970.8 15509.9 10011 7882 7005.9 7143 9313.6 10560.9 12088.2 FALSE TRUE 9539.234025 8841.0789 11594.23392 9368.939268 8955.661843 8248.297997 8498.346961 8522.351546 11575.32163 9624.618205 0.991128564 0.91859009 1.204643517 0.973434901 0.930495283 0.85700002 0.882980164 0.885474246 1.202678526 1 13.2325136 -3.508122323 9.015824292 0.977552615 1.320286694 0 0.118576294 0 0 0.027674206 0 0.000310369 3.508122323 0.342734079 DFYLAT(ph)SPPDSFLDDHHLTRPHPER ddPTM_K562_Paclitaxel_30min_R1 4 DFYLATSPPDSFLDDHHLTRPHPER 25 1 Q13131;Q13131-2 Q13131 PRKAA1 5-AMP-activated protein kinase catalytic subunit alpha-1 1 DFY(0.044)LAT(0.473)S(0.473)PPDS(0.01)FLDDHHLTRPHPER;DFY(0.009)LAT(0.347)S(0.347)PPDS(0.296)FLDDHHLTRPHPER;DFY(0.012)LAT(0.472)S(0.472)PPDS(0.044)FLDDHHLTRPHPER;DFY(0.012)LAT(0.489)S(0.489)PPDS(0.009)FLDDHHLTRPHPER 64.761 0.0011801 158903000 9017.1 8607.8 10337.1 8977.8 7304.5 7268.8 8770.8 10673.1 7839.1 12915 TRUE FALSE 9143.36722 9547.628714 7727.371257 8402.004091 8299.496566 8557.819621 10435.01351 9766.353536 8592.080581 10282.91591 0.889180394 0.928494291 0.751476655 0.817083808 0.807115087 0.832236663 1.014791291 0.949764991 0.835568496 1 13.3279618 -7.737533909 24.91729677 0.945844939 0.8354968 0.432961955 0.062934627 226.6988918 236294.1001 0.025029092 0.019376888 1.83E-08 7.737533909 -0.110348139 DFYLATSPPDS(ph)FLDDHHLTRPHPER ddPTM_K562_Paclitaxel_30min_R1 1 DFYLATSPPDSFLDDHHLTRPHPER 25 1 Q13131;Q13131-2 Q13131 PRKAA1 5-AMP-activated protein kinase catalytic subunit alpha-1 1 DFY(0.009)LAT(0.169)S(0.169)PPDS(0.648)FLDDHHLT(0.004)RPHPER 58.366 0.0031626 7185300 1475.6 1636.4 1951.6 2087.2 1533.5 1632.1 1935 2630.2 1795.1 3543.5 TRUE FALSE 1496.262953 1815.067686 1458.894443 1953.336334 1742.388662 1921.530019 2302.156149 2406.748093 1967.527376 2821.332755 0.530339057 0.643336977 0.517094072 0.692345251 0.617576448 0.681071744 0.815981789 0.85305361 0.697375158 1 11.46216112 -8.111805754 0.170591072 1.125846926 0.377095582 0.781518852 0.065989432 1.841412882 0.285675768 0.460438881 0.577025965 7.73E-09 8.111805754 -0.748751344 DGDSYDPYDFS(ph)DT(ph)EEEMPQVHTPK ddPTM_K562_Paclitaxel_30min_R1 1 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 2 DGDSYDPY(0.014)DFS(0.951)DT(0.596)EEEMPQVHT(0.439)PK 77.668 0.00057579 69416000 2997.7 2508 5694.6 3645.9 2682.9 2336.2 2207.7 3300 2294.8 4099.5 TRUE FALSE 3039.677049 2781.831922 4256.9278 3412.068292 3048.356402 2750.492268 2626.59955 3019.644402 2515.225793 3264.01965 0.931267999 0.852271806 1.30419797 1.045357767 0.933927099 0.842670254 0.804713155 0.925130583 0.770591499 1 11.67243403 -6.945295296 3.520214208 0.861381882 1.038818881 0.281778433 0.123346993 0.309824922 7.900186157 0.041844049 0.046995605 1.13E-07 6.945295296 0.177436998 DGDSYDPYDFS(ph)DTEEEMPQVHT(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 2 DGDSYDPY(0.002)DFS(0.964)DT(0.155)EEEMPQVHT(0.879)PK;DGDS(0.001)YDPY(0.008)DFS(0.982)DT(0.041)EEEMPQVHT(0.968)PK 89.366 0.00037038 119000000 4163.5 3450.8 9340.1 4877.1 3631.1 3150.3 2971.6 4425.9 3621.4 6315.1 TRUE FALSE 4221.801845 3827.570014 6982.076238 4564.304635 4125.717295 3708.961473 3535.445587 4049.892169 3969.251651 5028.079154 0.839645065 0.761239013 1.38861701 0.907763083 0.820535471 0.737649778 0.7031404 0.805455134 0.789417097 1 12.29579165 -6.663501056 4.217856284 0.790418105 0.996918567 0.186936477 0.17066196 0.336868491 10.8678079 0.052815971 0.068556144 2.17E-07 6.663501056 0.206500462 DGDSYDPYDFS(ph)DTEEEMPQVHTPK ddPTM_K562_Paclitaxel_30min_R1 2 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 1 DGDSYDPY(0.019)DFS(0.49)DT(0.49)EEEMPQVHTPK;DGDSYDPYDFS(0.954)DT(0.045)EEEMPQVHTPK 117.83 4.01E-08 365650000 8596.6 7227.7 18227.9 10578.6 7486.5 6041.6 6424 10155.1 6504.2 12624.6 TRUE FALSE 8716.978923 8016.844729 13626.04121 9900.135944 8506.288047 7112.992932 7642.920464 9292.360869 7128.957472 10051.69959 0.867214429 0.797561115 1.355595746 0.98492159 0.846253708 0.707640819 0.760361011 0.924456684 0.709229062 1 13.29515184 -6.777078873 4.520173433 0.809479147 1.014036184 0.223853896 0.160647672 0.286962465 14.11827877 0.051269667 0.061840718 1.67E-07 6.777078873 0.204557037 DGDSYDPYDFSDT(ph)EEEMPQVHT(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 2 DGDSYDPY(0.005)DFS(0.07)DT(0.934)EEEMPQVHT(0.992)PK 79.497 0.0003844 32360000 4065 2900.6 7316.5 4264.9 3228.2 2814.9 2748.3 4323.1 3097.8 5251.5 TRUE FALSE 4121.922542 3217.297317 5469.359086 3991.368403 3667.935494 3314.082992 3269.775578 3955.825671 3395.357531 4181.241417 0.985813095 0.769459832 1.308070628 0.95458932 0.877235999 0.792607425 0.782010712 0.946088799 0.812045322 1 12.02971563 -6.681712049 4.271969212 0.857075032 1.014649343 0.195935002 0.137327716 0.343562668 11.78496044 0.041731728 0.053829234 2.08E-07 6.681712049 0.157574311 DGDSYDPYDFSDT(ph)EEEMPQVHTPK ddPTM_K562_Paclitaxel_30min_R1 1 DGDSYDPYDFSDTEEEMPQVHTPK 24 0 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 1 DGDSYDPYDFS(0.149)DT(0.779)EEEMPQVHT(0.072)PK 109.42 2.45E-06 17366000 1632.9 1504.7 4240 2339 1749.2 1436.1 1133.2 2040.1 792.44 2420.8 TRUE FALSE 1655.765638 1668.988235 3169.55956 2188.987009 1987.470654 1690.772171 1348.218784 1866.780771 868.5574027 1927.439631 0.859049285 0.865909473 1.64444038 1.135696794 1.031145475 0.87721148 0.699486906 0.968528789 0.450627552 1 10.91246996 -7.239301856 2.268174866 0.77777853 1.13999269 0.28881655 0.247140311 0.409377994 4.14022774 0.098194131 0.091914648 5.76E-08 7.239301856 0.36221416 DGEGRIDDDDDERENFEITDWDLQNEFNPNR ddPTM_K562_Paclitaxel_30min_R1 2 DGEGRIDDDDDERENFEITDWDLQNEFNPNR 31 2 Q9UBB9;F6UKU9;F6SQZ1;F6XM96;F6UQ07 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 0 ; 70.718 9.14E-05 18402700 960.73 954.88 1693.79 1414.95 1102.8 1029.98 972.63 1401.37 1212.4 1271.77 FALSE TRUE 974.1831841 1059.137028 1266.171766 1324.20144 1253.020031 1212.632491 1157.181465 1282.314871 1328.856437 1012.582576 0.962077768 1.045975956 1.250438034 1.307746619 1.237449725 1.197564051 1.142802071 1.266380542 1.312343772 1 9.983823849 -5.641735955 3.94721911 1.224801322 0.979274403 0.488265806 0.087175474 0.162144481 4.520492499 0.021905658 0.066308976 2.28E-06 5.641735955 -0.245526919 DGEHVIDQGDDGDNFYVIDR ddPTM_K562_Paclitaxel_30min_R1 2 DGEHVIDQGDDGDNFYVIDR 20 0 P31323 P31323 PRKAR2B cAMP-dependent protein kinase type II-beta regulatory subunit 0 ; 202.6 1.27E-19 17314600 2192.3 1751.89 2909.8 2022.45 2096.56 1513.09 1813.11 2542.8 1539.01 2647 FALSE TRUE 2222.998964 1943.167275 2175.185002 1892.739109 2382.146967 1781.415267 2157.138157 2326.773268 1686.838787 2107.539947 1.054783786 0.922007328 1.032096689 0.898079826 1.130297421 0.845258126 1.023533699 1.104023329 0.80038283 1 11.04134426 -8.764405578 24.9997134 0.900191495 0.996050452 0.147877693 0.096398734 152.1209897 1281992.634 0.074673558 0.022537401 1.72E-09 8.764405578 0.095858956 DGGGLAPPPGSCS(ph)PSLSPSSNR ddPTM_K562_Paclitaxel_30min_R1 1 DGGGLAPPPGSCSPSLSPSSNR 22 0 A8MUP8;P10276-3;P10276-2;P10276 A8MUP8 RARA Retinoic acid receptor alpha 1 DGGGLAPPPGS(0.219)CS(0.767)PS(0.012)LS(0.001)PSSNR 158.5 6.23E-18 6761500 2264.9 1501.4 2447.2 2080.7 1829.9 1739 1781.5 2231.2 1608.1 2248.8 TRUE FALSE 2296.615588 1665.327929 1829.374093 1947.253215 2079.16336 2047.387233 2119.530325 2041.645633 1762.56519 1790.493326 1.282671963 0.930094464 1.021715115 1.087551228 1.161223742 1.143476607 1.183768906 1.140269893 0.984401989 1 10.80614143 -4.556413834 5.325150692 1.085027178 46.8504805 0.361650599 0.082158027 5521.452574 464.544946 0.02157593 3063402.798 2.78E-05 4.556413834 45.76545332 DGGS(ph)GNSTIIVSR ddPTM_K562_Paclitaxel_30min_R1 2 DGGSGNSTIIVSR 13 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 DGGS(0.972)GNS(0.027)T(0.001)IIVSR;DGGS(0.995)GNS(0.005)TIIVSR 156.72 0.00042217 84362000 1812.3 1872.32 2878.3 2177.62 1975.19 1375.64 1490.4 1820.75 1297.09 2069.5 TRUE FALSE 1837.677791 2076.746229 2151.637567 2037.9572 2244.244318 1619.590439 1773.19562 1666.065923 1421.68129 1647.734764 1.115275244 1.260364395 1.305815483 1.236823574 1.362017946 0.982919384 1.076141414 1.011125066 0.86280955 1 10.68626832 -7.274400781 24.85503812 0.992890774 1.257994075 0.756795124 0.076331246 368.6737846 706973.9849 0.027163533 0.024103692 5.32E-08 7.274400781 0.265103301 DGLNQTTIPVS(ph)PPSTTKPSR ddPTM_K562_Paclitaxel_30min_R1 2 DGLNQTTIPVSPPSTTKPSR 20 1 X6RLN4;Q71RC2-2;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;Q71RC2-6 X6RLN4 LARP4 La-related protein 4 1 DGLNQTTIPVS(0.904)PPS(0.004)T(0.004)T(0.053)KPS(0.035)R;DGLNQTTIPVS(0.995)PPS(0.001)T(0.001)T(0.002)KPS(0.002)R 115.5 5.86E-05 99265000 2738.7 2551.8 6002.5 4152.6 2724.8 2130.3 2202 3229.8 2028.06 3841.3 TRUE FALSE 2777.05025 2830.414154 4487.094637 3886.270822 3095.963891 2508.078794 2619.818005 2955.40833 2222.864225 3058.440951 0.907995379 0.925443453 1.467118283 1.270670542 1.012268649 0.820051403 0.856586099 0.966312045 0.726796515 1 11.57858071 -7.009448026 5.081470013 0.873722902 1.15081729 0.36931953 0.165470414 0.210178419 16.10495996 0.057909731 0.061876486 9.78E-08 7.009448026 0.277094388 DGMDNQGGYGS(ph)VGR ddPTM_K562_Paclitaxel_30min_R1 1 DGMDNQGGYGSVGR 14 0 P31942-4;P31942-3;P31942;P31942-2 P31942-4 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 1 DGMDNQGGYGS(1)VGR 156 0.0001231 12224000 970.64 747.04 931.95 831.09 722.85 752.61 901.46 1132.9 740.38 1053 TRUE FALSE 984.2319547 828.6043535 696.6676963 777.7876072 821.314408 886.0748163 1072.507329 1036.653074 811.4968071 838.398022 1.173943555 0.988318593 0.830951026 0.927706873 0.979623504 1.05686654 1.279234088 1.236468892 0.967913552 1 9.711491503 -7.47830253 4.486752315 1.144191732 0.971605026 0.224117155 0.119260291 0.273969425 12.18813743 0.045793515 0.038591639 3.32E-08 7.47830253 -0.172586706 DGPPLLENAHS(ph)S ddPTM_K562_Paclitaxel_30min_R1 2 DGPPLLENAHSS 12 0 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 DGPPLLENAHS(0.602)S(0.398);DGPPLLENAHS(0.582)S(0.418) 125.47 0.0015642 27967500 4269.1 4145.3 6264.3 4786.2 3830.9 3728.1 3811.4 4928 4279.8 5324.7 TRUE FALSE 4328.880571 4597.897873 4682.799989 4479.234554 4352.733438 4389.22619 4534.593253 4509.33564 4690.893913 4239.523217 1.021077218 1.08453183 1.104558166 1.056542051 1.026703526 1.035311276 1.069599816 1.063642162 1.106467325 1 12.04968631 -6.497779172 24.68932025 1.052589594 1.073011141 0.062399895 0.03297527 1882.322735 1851551.178 0.009433478 0.013903272 3.18E-07 6.497779172 0.020421546 DGQVINETS(ph)QHHDDLE ddPTM_K562_Paclitaxel_30min_R1 2 DGQVINETSQHHDDLE 16 0 P08670 P08670 VIM Vimentin 1 DGQVINET(0.443)S(0.557)QHHDDLE;DGQVINET(0.108)S(0.892)QHHDDLE 121.82 0.00014117 173657000 6025.6 5019.6 7155 5707.5 4202.7 4537.7 5098.1 6017 6447.5 7055.3 TRUE FALSE 6109.976991 5567.656903 5348.631758 5341.446496 4775.178892 5342.397383 6065.437861 5505.818293 7066.811183 5617.425987 1.087682687 0.991140233 0.95214993 0.950870827 0.850065297 0.951040102 1.079753943 0.98013188 1.258015895 1 12.4556935 -7.763140251 24.90473901 1.077819778 0.95877606 0.291234599 0.088160002 56.75522209 831002.469 0.035558306 0.025387579 1.73E-08 7.763140251 -0.119043717 DGQVINETSQHHDDLE ddPTM_K562_Paclitaxel_30min_R1 3 DGQVINETSQHHDDLE 16 0 P08670 P08670 VIM Vimentin 0 ;; 140.49 1.75E-08 226544000 16827 16273.9 22560.8 19071.9 16145.6 14770.6 15345.2 18518.5 17177.8 20688.3 FALSE TRUE 17062.62992 18050.73944 16865.04701 17848.7137 18344.90407 17389.95852 18256.87159 16945.23784 18827.80444 16472.0131 1.035855776 1.09584295 1.023860709 1.083578163 1.113701401 1.055727579 1.108357034 1.028729016 1.143017816 1 14.00772926 DGQWFTDWDAVPHSR ddPTM_K562_Paclitaxel_30min_R1 4 DGQWFTDWDAVPHSR 15 0 Q08J23-3;Q08J23-2;Q08J23 Q08J23-3 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 0 ;;; 195.6 7.67E-09 88109000 16414.9 15277.3 21649.8 17962 16479 15928.1 14859.7 18140.8 17258.1 21175.5 FALSE TRUE 16644.75924 16945.32728 16184.04023 16809.99771 18723.71879 18752.72489 17679.2505 16599.62581 18915.81762 16859.92148 0.987238242 1.005065611 0.959911958 0.997038909 1.110546026 1.112266443 1.048596254 0.984561276 1.121939841 1 14.0413102 -6.630203919 7.33977204 1.063773867 0.984987714 0.414661683 0.044211835 0.228948683 14.12086434 0.013311932 0.017202769 2.34E-07 6.630203919 -0.078786152 DGSGGASGTLQPSS(ph)GGGSSNSR ddPTM_K562_Paclitaxel_30min_R1 2 DGSGGASGTLQPSSGGGSSNSR 22 0 J3QSD7;Q9NYV4-3;Q9NYV4-2;Q9NYV4 J3QSD7 CDK12 Cyclin-dependent kinase 12 1 DGSGGASGTLQPS(0.059)S(0.742)GGGS(0.097)S(0.097)NS(0.005)R;DGSGGASGTLQPS(0.048)S(0.435)GGGS(0.191)S(0.058)NS(0.268)R 128.4 5.27E-08 2214600 1170.17 1217.9 1914.57 1531.63 1223.59 1282.13 921.66 1631.33 1340.4 1785.46 TRUE FALSE 1186.55599 1350.874441 1431.213124 1433.398107 1390.263674 1509.497754 1096.540174 1492.738334 1469.151409 1421.582272 0.834672754 0.950261175 1.006774742 1.008311749 0.977969197 1.0618434 0.771351891 1.050054129 1.033462106 1 10.47328188 -5.298820809 2.965668245 0.985540506 0.815968767 0.26397239 0.07712526 0.484337323 6.500449348 0.019661488 0.186353961 5.03E-06 5.298820809 -0.169571739 DGSGGASGTLQPSS(ph)GGGSSNSRER ddPTM_K562_Paclitaxel_30min_R1 1 DGSGGASGTLQPSSGGGSSNSRER 24 1 J3QSD7;Q9NYV4-3;Q9NYV4-2;Q9NYV4 J3QSD7 CDK12 Cyclin-dependent kinase 12 1 DGSGGASGTLQPS(0.108)S(0.27)GGGS(0.181)S(0.181)NS(0.26)RER 81.507 0.00018799 14498000 1478.3 1474 2193.4 1749.9 1405.2 1686.8 1701.6 2008.8 1681.2 1700.9 TRUE FALSE 1499.000761 1634.936305 1639.649042 1637.669246 1596.61203 1985.930296 2024.469717 1838.139901 1842.686772 1354.255646 1.106881677 1.207258252 1.210738199 1.209276292 1.178959109 1.466436785 1.494894795 1.357306434 1.360663902 1 10.40328439 -7.24187324 24.28088177 1.368131684 1.187034049 0.239696204 0.130146805 673.3848593 835646.8583 0.040946805 0.040881698 5.73E-08 7.24187324 -0.181097635 DGSGGASGTLQPSSGGGS(ph)SNSRER ddPTM_K562_Paclitaxel_30min_R1 2 DGSGGASGTLQPSSGGGSSNSRER 24 1 J3QSD7;Q9NYV4-3;Q9NYV4-2;Q9NYV4 J3QSD7 CDK12 Cyclin-dependent kinase 12 1 DGSGGASGTLQPS(0.049)S(0.22)GGGS(0.269)S(0.269)NS(0.194)RER;DGSGGASGTLQPS(0.223)S(0.165)GGGS(0.254)S(0.103)NS(0.254)RER 77.533 0.00024115 9397400 1407.42 1668.08 2429.5 1799.37 1582.9 1449.86 1639.37 1734.26 1618.71 2165.53 TRUE FALSE 1427.128222 1850.206615 1816.142677 1683.966462 1798.517779 1706.972314 1950.431899 1586.923788 1774.194328 1724.193797 0.827707549 1.073085066 1.053328622 0.976668901 1.043106512 0.990011863 1.131213848 0.920385974 1.028999368 1 10.75170623 -5.252410591 24.6364259 1.023909881 0.827707424 0.537531695 0.054646032 740.9530877 2021751.459 0.013003519 0.15292125 5.59E-06 5.252410591 -0.196202457 DGSGGASGTLQPSSGGGSSNS(ph)RER ddPTM_K562_Paclitaxel_30min_R1 1 DGSGGASGTLQPSSGGGSSNSRER 24 1 J3QSD7;Q9NYV4-3;Q9NYV4-2;Q9NYV4 J3QSD7 CDK12 Cyclin-dependent kinase 12 1 DGSGGASGTLQPS(0.004)S(0.005)GGGS(0.031)S(0.272)NS(0.687)RER 85.525 0.00017057 14534000 1243.2 1153.2 1827.6 1531.7 1255.3 1142.5 1234.4 1223.4 1378.1 1600 TRUE FALSE 1260.608636 1279.110276 1366.199777 1433.463618 1426.293112 1345.106334 1468.620956 1119.464534 1510.472663 1273.919122 0.989551545 1.004074948 1.072438394 1.125239109 1.119610412 1.05588048 1.152836888 0.878756363 1.185689607 1 10.31505797 -5.738172579 4.764314647 1.075404353 0.994050215 0.124109715 0.082077238 0.369204747 20.53250344 0.020351805 0.053371806 1.83E-06 5.738172579 -0.081354139 DGSIS(ph)PVSSECSVVER ddPTM_K562_Paclitaxel_30min_R1 2 DGSISPVSSECSVVER 16 0 H0YCZ0;H7BY22;H0YEM9;Q8NCP5-3;Q8NCP5-4;Q8NCP5-2;Q8NCP5 H0YCZ0 ZBTB44 Zinc finger and BTB domain-containing protein 44 1 DGS(0.061)IS(0.939)PVSSECSVVER;DGSIS(0.996)PVS(0.003)S(0.001)ECSVVER 163.34 9.70E-08 68771000 3224.5 2759.7 4123.5 3110.5 3054.5 2686.4 2087.61 3484.4 2550.7 3388.7 TRUE FALSE 3269.652948 3061.013379 3082.471426 2911.006452 3470.574613 3162.795321 2483.723099 3188.378471 2795.706132 2698.08108 1.211843844 1.134514971 1.142468049 1.078917336 1.286312201 1.172238798 0.920551691 1.181720777 1.036183142 1 11.39771799 -7.642687237 20.09924263 1.049210859 1.169180799 0.412738595 0.078942132 2.48193835 417.8605459 0.029695593 0.023002015 2.28E-08 7.642687237 0.11996994 DGSS(ph)PPLLEK ddPTM_K562_Paclitaxel_30min_R1 1 DGSSPPLLEK 10 0 H7BYY2;Q6W2J9-4;Q6W2J9-2;Q6W2J9;Q6W2J9-3 H7BYY2 BCOR BCL-6 corepressor 1 DGS(0.027)S(0.973)PPLLEK 101.71 0.0088766 30983000 4184 3355.9 8653.3 5656.2 3801.8 2949.8 2916.1 4579.8 3647.1 6198.9 TRUE FALSE 4242.588909 3722.308511 6468.667392 5293.436648 4319.669525 3472.905613 3469.414752 4190.717404 3997.420251 4935.560777 0.859596123 0.754181476 1.310624605 1.072509667 0.875213521 0.70364965 0.702942362 0.849086374 0.809922202 1 12.2689983 -6.957738573 5.650742762 0.795754851 1.002394098 0.236753486 0.156180217 0.268977597 21.05357233 0.052026304 0.058547037 1.10E-07 6.957738573 0.206639247 DGTDTS(ph)QSGEDGGCWQR ddPTM_K562_Paclitaxel_30min_R1 1 DGTDTSQSGEDGGCWQR 17 0 Q9NPI1;Q9NPI1-2 Q9NPI1 BRD7 Bromodomain-containing protein 7 1 DGTDT(0.029)S(0.971)QSGEDGGCWQR 145.46 1.85E-08 6117300 1086.5 968.72 1723.1 1419.7 1047.9 980.85 1032.7 1121.7 1192.5 1609.7 TRUE FALSE 1101.714352 1074.488126 1288.082094 1328.646796 1190.641721 1154.789976 1228.649434 1026.404584 1307.044953 1281.642256 0.859611445 0.838368211 1.005024676 1.036675242 0.92899693 0.901023644 0.958652407 0.800851079 1.019820427 1 10.3237779 -5.744575121 24.97620202 0.949261877 0.848989753 0.293792957 0.065863983 327.0001513 484283.9383 0.017150654 0.045118936 1.80E-06 5.744575121 -0.100272123 DGVSLGAVSS(ph)TEEASR ddPTM_K562_Paclitaxel_30min_R1 1 DGVSLGAVSSTEEASR 16 0 H3BS66;A0A2R8Y7R4;B2RUZ4 H3BS66 SMIM1 Small integral membrane protein 1 1 DGVSLGAVS(0.238)S(0.727)T(0.035)EEASR 249.89 9.63E-64 98220000 1941.3 1905 3031.5 2224.9 1907.1 1440.4 1811.7 1962.9 1197.7 2163.2 TRUE FALSE 1968.484189 2112.994342 2266.160332 2082.204872 2166.879307 1695.834716 2155.460617 1796.139393 1312.744436 1722.338653 1.142913553 1.226817002 1.315746081 1.208940454 1.258102931 0.984611658 1.251473172 1.042849146 0.762187178 1 10.75015312 -8.516009842 4.585183747 0.881615146 1.196722481 0.621630431 0.099418612 0.119841473 6.639545162 0.065734092 0.025976963 3.05E-09 8.516009842 0.315107335 DGWS(ph)LDRDRGDRDLPSSR ddPTM_K562_Paclitaxel_30min_R1 1 DGWSLDRDRGDRDLPSSR 18 3 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 DGWS(0.999)LDRDRGDRDLPSS(0.001)R 72.145 0.025081 14585000 526.04 615.67 832.08 599.59 643.63 522.95 354.68 625.88 822.69 567.02 TRUE FALSE 533.406183 682.8909327 622.011113 561.1349811 731.3033027 615.6878399 421.9786784 572.7075874 901.7130504 451.4610128 1.181511067 1.512624376 1.377773707 1.242931206 1.619859262 1.363767463 0.934695725 1.268564884 1.997322083 1 8.818457595 -7.535355761 24.88393416 1.297769827 1.396052817 0.019188906 0.29055167 1153.511989 2300521.698 0.111214109 0.08619741 2.92E-08 7.535355761 0.09828299 DGYGGSRDS(ph)YSSSR ddPTM_K562_Paclitaxel_30min_R1 2 DGYGGSRDSYSSSR 14 1 P38159;P38159-2;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 DGYGGS(0.009)RDS(0.991)YSSSR;DGYGGS(0.001)RDS(0.995)YS(0.003)S(0.001)SR 185.14 5.86E-06 58560000 5937.2 5069.4 7048.6 5685.2 4559.5 4152.3 4682.4 6189.2 6353.5 7154.5 TRUE FALSE 6020.339118 5622.894236 5269.093754 5320.576718 5180.581093 4888.652104 5570.860956 5663.388828 6963.782063 5696.408973 1.056865676 0.987094547 0.924985158 0.934022951 0.909446832 0.858198933 0.977960147 0.99420334 1.222486324 1 12.47583701 -8.57243768 7.778146821 1.111992876 0.947448658 0.451131668 0.070241639 0.210563441 28.10315915 0.047694405 0.017880239 2.68E-09 8.57243768 -0.164544217 DHDYRDMDYR ddPTM_K562_Paclitaxel_30min_R1 2 DHDYRDMDYR 10 1 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 0 ; 114.97 0.0042766 15291900 468.19 288.45 794.08 554.02 620.05 467.08 596.51 533.39 802.9 692.55 FALSE TRUE 474.7461045 319.9439465 593.6046829 518.4876369 704.5113075 549.9100799 709.6946585 488.0751902 880.0221325 551.4079299 0.86097076 0.580230949 1.076525474 0.940297752 1.277659006 0.99728359 1.287059217 0.885143582 1.5959548 1 9.106976205 -6.058107299 1.553499287 1.157524618 0.719342 0.35802399 0.213149654 0.427661974 1.95213701 0.06134621 0.179126531 8.75E-07 6.058107299 -0.438182618 DHFEEAMR ddPTM_K562_Paclitaxel_30min_R1 2 DHFEEAMR 8 0 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ; 184.49 3.59E-07 35349000 9700.2 9305.5 12379.9 10423.7 8404.3 8360.3 7806.9 10421.2 9559.5 10958.7 FALSE TRUE 9836.032728 10321.50596 9254.441132 9755.170537 9549.107946 9842.881821 9288.21852 9535.854013 10477.73269 8725.310925 1.127298822 1.18293847 1.060643135 1.118031279 1.094414632 1.12808379 1.064514331 1.092895611 1.200843475 1 13.09099083 -12.28487669 2.391140596 0.442347811 1.116191526 0.403982734 0.043199977 834245.9971 655974.1513 2566387.831 0.010994084 5.19E-13 12.28487669 0.673843715 DHGS(ph)WSLSPPPER ddPTM_K562_Paclitaxel_30min_R1 1 DHGSWSLSPPPER 13 0 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 DHGS(0.9)WS(0.099)LS(0.001)PPPER 85.473 0.01705 8034200 633.66 536.31 719.7 664.4 526.02 485.5 490.17 592.46 548.3 749.08 TRUE FALSE 642.533195 594.8661395 538.0028339 621.7883577 597.6728296 571.5966082 583.1771986 542.126825 600.9666649 596.4170848 1.077321913 0.997399563 0.902058052 1.04253948 1.002105481 0.958384028 0.977800961 0.908972662 1.007628185 1 9.220177775 -7.255815168 22.98587722 0.965320695 1.000348369 0.099675842 0.048733294 383.0537397 1565524.643 0.016497844 0.016012171 5.55E-08 7.255815168 0.035027673 DHGSWS(ph)LSPPPER ddPTM_K562_Paclitaxel_30min_R1 1 DHGSWSLSPPPER 13 0 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 DHGS(0.021)WS(0.955)LS(0.024)PPPER 93.181 0.014211 0 1688.6 1496.4 2442.1 1976.1 1223.1 1128.3 1103.6 1741.6 1441.8 1383.3 TRUE FALSE 1712.24561 1659.782012 1825.561651 1849.361791 1389.706927 1328.388163 1313.002339 1593.640209 1580.291332 1101.382701 1.554632744 1.506998441 1.657518 1.679127327 1.261783871 1.206109522 1.192139969 1.446945016 1.434824908 1 10.10510014 -6.769108643 24.9997599 1.273530165 1.597096149 0.632772039 0.127481779 122.0570725 397872.6924 0.040483387 0.046763746 1.70E-07 6.769108643 0.323565984 DHHPENGEEAVT(ph)VLEDLESELDDPGQPVSLRR ddPTM_K562_Paclitaxel_30min_R1 1 DHHPENGEEAVTVLEDLESELDDPGQPVSLRR 32 1 P17028-2;P17028 P17028-2 ZNF24 Zinc finger protein 24 1 DHHPENGEEAVT(0.497)VLEDLES(0.497)ELDDPGQPVS(0.006)LRR 47.429 0.0080858 4310800 886.25 809.64 905.87 952.78 749.56 674.44 777.4 947.7 866.56 1125.9 TRUE FALSE 898.6602343 898.0392332 677.1719148 891.6729553 851.6627622 794.0424644 924.9075917 867.1869696 949.7969599 896.440962 1.002475648 1.001782907 0.75540046 0.994681182 0.950048914 0.885772179 1.031755164 0.967366515 1.059519812 1 9.808064763 -7.772458565 24.99936872 1.011940929 0.930563513 0.239958357 0.072255451 346.4229308 785926.6941 0.030311741 0.02065385 1.69E-08 7.772458565 -0.081377416 DHHPENGEEAVTVLEDLES(ph)ELDDPGQPVSLRR ddPTM_K562_Paclitaxel_30min_R1 1 DHHPENGEEAVTVLEDLESELDDPGQPVSLRR 32 1 P17028-2;P17028 P17028-2 ZNF24 Zinc finger protein 24 1 DHHPENGEEAVT(0.009)VLEDLES(0.983)ELDDPGQPVS(0.008)LRR 48.788 0.0030712 7447200 824.26 687 906.82 683 686.39 616.41 576.57 1000.9 800.87 953.28 TRUE FALSE 835.8021831 762.0089833 677.8820756 639.195437 779.8879387 725.7216587 685.9711476 915.8672976 877.7971419 759.0010127 1.101187178 1.003963065 0.893124073 0.842153602 1.02751897 0.956153742 0.903781597 1.206674671 1.15651643 1 9.567958 -8.258250369 24.99931575 1.136196666 0.957944619 0.423978196 0.084824765 246.2484322 1930410.383 0.042768646 0.023357569 5.52E-09 8.258250369 -0.178252047 DHS(ph)PTPSVFNS(ph)DEERYR ddPTM_K562_Paclitaxel_30min_R1 4 DHSPTPSVFNSDEERYR 17 1 Q6UN15-3;Q6UN15-5;Q6UN15 Q6UN15-3 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 2 DHS(0.957)PT(0.043)PSVFNS(1)DEERYR;DHS(0.994)PT(0.006)PSVFNS(1)DEERYR;DHS(0.992)PT(0.008)PS(0.014)VFNS(0.986)DEERYR;DHS(0.972)PT(0.028)PSVFNS(1)DEERYR 127.59 0.00024753 274063000 6208.3 6113.49 9704.1 7800.6 5910.1 6207.3 5315.9 6971.2 5202.28 7664.8 TRUE FALSE 6295.235354 6780.981513 7254.179936 7300.30443 6715.155679 7308.0775 6324.564274 6378.953047 5701.982238 6102.709553 1.031547594 1.111142756 1.188681826 1.196239862 1.100356427 1.19751357 1.036353479 1.045265712 0.934336165 1 12.57523421 -8.112610662 1.987322021 0.981554256 1.139053358 0.580986573 0.055466222 0.250198989 1.897523977 0.036226298 0.016974167 7.72E-09 8.112610662 0.157499102 DHS(ph)PTPSVFNSDEER ddPTM_K562_Paclitaxel_30min_R1 3 DHSPTPSVFNSDEER 15 0 Q6UN15-3;Q6UN15-5;Q6UN15 Q6UN15-3 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 DHS(0.976)PT(0.003)PS(0.021)VFNSDEER;DHS(0.971)PT(0.029)PSVFNSDEER;DHS(0.952)PT(0.048)PSVFNSDEER 206.43 3.37E-13 67318000 3807.81 3263.53 5517.3 4931.1 3762.16 3481.86 3340.09 4031.28 2013.3 5560.9 TRUE FALSE 3861.131088 3619.853242 4124.389378 4614.841317 4274.629886 4099.318983 3973.854641 3688.797602 2206.686461 4427.585528 0.872062451 0.817568225 0.931521108 1.042292981 0.965453939 0.925858791 0.897521825 0.833139773 0.498394994 1 12.11230446 -8.527185213 24.98878767 0.721387446 0.920364107 0.22958188 0.125629143 154.6835129 897529.4841 0.08046196 0.030678738 2.97E-09 8.527185213 0.19897666 DHSPT(ph)PSVFNSDEER ddPTM_K562_Paclitaxel_30min_R1 1 DHSPTPSVFNSDEER 15 0 Q6UN15-3;Q6UN15-5;Q6UN15 Q6UN15-3 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 DHS(0.088)PT(0.567)PS(0.218)VFNS(0.127)DEER 90.653 0.029844 13383000 882.17 563.25 983.26 916.27 569.3 614.3 557.07 759.34 495.59 1121.6 TRUE FALSE 894.5231017 624.7475398 735.0238522 857.5045433 646.8482983 723.2374798 662.7711244 694.8293273 543.1936339 893.0173043 1.001686191 0.699591751 0.82307907 0.960232841 0.724340161 0.8098807 0.742170528 0.778069276 0.608267758 1 9.802544321 -6.791965294 24.99994341 0.765915289 0.855460225 0.12084204 0.119048008 440.4821142 360741.1667 0.035336602 0.040072492 1.61E-07 6.791965294 0.089544936 DHTVS(ph)GDEDYCPR ddPTM_K562_Paclitaxel_30min_R1 2 DHTVSGDEDYCPR 13 0 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 DHT(0.064)VS(0.936)GDEDYCPR;DHT(0.025)VS(0.975)GDEDYCPR 184.96 0.00018499 84277000 849.43 818.4 1563.25 939.79 1007.08 985.75 991.2 1164.14 746.09 1198.68 TRUE FALSE 861.3246407 907.7556797 1168.588203 879.5160757 1144.261346 1160.558922 1179.275026 1065.239041 817.7552781 954.388358 0.902488629 0.951138676 1.224436775 0.92154946 1.198947301 1.216023762 1.235634337 1.116148402 0.856837022 1 9.898432634 -5.610999091 7.251593638 1.106756399 0.914552054 0.223932091 0.126236934 0.280653805 19.08684235 0.03254401 0.087349907 2.45E-06 5.610999091 -0.192204346 DIAINIS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 DIAINISR 8 0 A0A087X1N6;J3QRU7;Q6QNY1-2;Q6QNY1 A0A087X1N6 BLOC1S2 Biogenesis of lysosome-related organelles complex 1 subunit 2 1 DIAINIS(1)R 86.472 0.021206 118220000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 DIDEVSSLLR ddPTM_K562_Paclitaxel_30min_R1 2 DIDEVSSLLR 10 0 P50990-2;P50990;P50990-3;H7C4C8 P50990-2 CCT8 T-complex protein 1 subunit theta 0 ; 172.59 0.0012361 29866000 3479.7 3446 4842.5 4577.1 3474.4 3448.3 3667.7 4104.6 2955 4905.9 FALSE TRUE 3528.426536 3822.245934 3619.950984 4283.545292 3947.672102 4059.807588 4363.626928 3755.88861 3238.840953 3906.074887 0.903317688 0.978538826 0.926748997 1.096636756 1.010649364 1.039357336 1.117138574 0.961550589 0.829180455 1 11.93150389 -2.069684653 19.01813132 0.992221561 0.004945268 0 0.083084021 0 0 0.019665408 0 0.008517563 2.069684653 -0.987276293 DIDIHEVR ddPTM_K562_Paclitaxel_30min_R1 4 DIDIHEVR 8 0 A0A1W2PPS1;Q00839-2;Q00839;A0A1W2PP35;Q5RI18;A0A1X7SBS1;A0A1W2PRZ7;A0A1W2PQ74;A0A1W2PQL0;A0A1W2PP34;A0A1W2PPL4;A0A1W2PPH7 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 ;;; 120.87 0.0082888 219125000 33552.3 31368 42499.5 35774 28524.8 27768.8 31189 37457.9 27427.1 40200.5 FALSE TRUE 34022.13572 34792.86432 31769.9756 33479.61576 32410.36069 32693.20679 37106.94993 34275.61759 30061.5955 32007.61603 1.062938761 1.087018299 0.992575503 1.045989046 1.012582776 1.021419613 1.159316267 1.070858184 0.939201329 1 14.96612761 -8.755153888 24.99442699 0.969600655 1.055899901 0.366075394 0.045780247 152.7970008 607619.0417 0.034427649 0.01229144 1.76E-09 8.755153888 0.086299246 DIGMLNT(ph)SVPNDMDEQQNAR ddPTM_K562_Paclitaxel_30min_R1 1 DIGMLNTSVPNDMDEQQNAR 20 0 Q8TB52 Q8TB52 FBXO30 F-box only protein 30 1 DIGMLNT(0.797)S(0.203)VPNDMDEQQNAR 145.99 1.45E-12 12191000 383.18 611.84 658.85 528.31 479.42 441.94 369.03 542.43 496.6 620.51 TRUE FALSE 388.5457022 678.6427603 492.5151689 494.4265612 544.7251206 520.3118539 439.051516 496.3471858 544.3006489 494.0497214 0.786450605 1.373632513 0.996893931 1.000762757 1.102571456 1.053156861 0.888678805 1.00465027 1.101712288 1 8.948512432 -7.549965433 24.95279275 0.995114991 1.065397628 0.027969688 0.143484819 738.6650789 680466.2695 0.052501144 0.04066817 2.82E-08 7.549965433 0.070282637 DIGMLNTS(ph)VPNDMDEQQNAR ddPTM_K562_Paclitaxel_30min_R1 1 DIGMLNTSVPNDMDEQQNAR 20 0 Q8TB52 Q8TB52 FBXO30 F-box only protein 30 1 DIGMLNT(0.329)S(0.671)VPNDMDEQQNAR 134.93 7.83E-10 7641300 442.52 476.56 557.55 517.09 563.91 436.45 275.58 362.53 444.94 660.6 TRUE FALSE 448.7166453 528.5924324 416.7896068 483.9261618 640.7240891 513.8482794 327.8698664 331.7308137 487.678475 525.9693574 0.85312317 1.004987125 0.792421842 0.920065314 1.218177599 0.976954783 0.623363057 0.630703688 0.927199405 1 9.038834941 -7.734783929 24.97542602 0.764541827 0.965129234 0.212270679 0.151627207 288.7252827 270527.4762 0.059267724 0.045895487 1.84E-08 7.734783929 0.200587407 DIS(ph)LDSELHDLR ddPTM_K562_Paclitaxel_30min_R1 2 DISLDSELHDLR 12 0 H0YJ97;Q15643-2;Q15643 H0YJ97 TRIP11 Thyroid receptor-interacting protein 11 1 DIS(0.999)LDS(0.001)ELHDLR;DIS(1)LDSELHDLR 154.72 0.0010089 8447100 6146.9 5574.6 7623.1 6677.8 5475.2 5453.1 5732.4 6623.9 6901.3 8280.1 TRUE FALSE 6232.975565 6183.25368 5698.554124 6249.515797 6221.014936 6420.13072 6820.092975 6061.15835 7564.200701 6592.611075 0.945448699 0.937906637 0.864385 0.947957604 0.943634452 0.973837323 1.034505585 0.91938661 1.147375541 1 12.68663426 -7.570880815 0.890746285 1.035189423 0.917946378 0.409577661 0.055964361 0.596371472 0.968909147 0.038395283 0.02636356 2.69E-08 7.570880815 -0.117243045 DIS(ph)SSLNSLADSNAR ddPTM_K562_Paclitaxel_30min_R1 1 DISSSLNSLADSNAR 15 0 O94776 O94776 MTA2 Metastasis-associated protein MTA2 1 DIS(0.935)S(0.033)S(0.033)LNSLADSNAR 220.72 1.22E-162 0 1289.1 1553 1636.9 1458 1242.6 1118.9 992.43 2055.7 722.36 1850.6 TRUE FALSE 1307.151377 1722.561792 1223.64435 1364.490406 1411.863157 1317.321205 1180.738412 1881.055454 791.7459056 1473.446704 0.887138553 1.169069629 0.830463936 0.926053451 0.958204429 0.89404062 0.801344499 1.276636236 0.537342751 1 10.52497916 -5.781137327 24.99040659 0.911733481 1.028104308 0.066607784 0.185020046 606.8525076 769902.2089 0.044763853 0.093389361 1.66E-06 5.781137327 0.116370827 DISENKR ddPTM_K562_Paclitaxel_30min_R1 1 DISENKR 7 1 P11142-2;P11142;E9PKE3;E9PN89;E9PNE6;A8K7Q2 P11142-2 HSPA8 Heat shock cognate 71 kDa protein 0 92.467 0.02599 6946400 2161.5 1688.1 3856.7 2908.2 2097.2 1932.8 1540.9 2319.4 1999.7 3526.2 FALSE TRUE 2191.767669 1872.412467 2883.028386 2721.681069 2382.874146 2275.554942 1833.277731 2122.352493 2191.78012 2807.558504 0.780666784 0.666918415 1.026880965 0.969412058 0.848735349 0.810510249 0.652979351 0.755942392 0.780671219 1 11.45510037 -7.36213612 3.980369982 0.772523193 0.863450109 0.036299146 0.122654142 0.603313051 17.05535889 0.046785688 0.040966985 4.34E-08 7.36213612 0.090926916 DISMEIDS(ph)PENMMR ddPTM_K562_Paclitaxel_30min_R1 2 DISMEIDSPENMMR 14 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 DISMEIDS(1)PENMMR;DISMEIDS(1)PENMMR 245.39 2.40E-58 27267000 3253.9 3059.8 4138.5 3166 2829.6 2943.2 2715.8 4063.9 3087.8 4036.5 TRUE FALSE 3299.464639 3393.879312 3093.684491 2962.94693 3215.039426 3465.135195 3231.108873 3718.646329 3384.396987 3213.859084 1.026636375 1.056013728 0.962607386 0.921928079 1.000367266 1.078185168 1.005367313 1.157065768 1.053063279 1 11.65009096 -7.208561741 6.005525239 1.065202621 0.99076345 0.273261683 0.052650014 0.283760748 23.6853141 0.018258964 0.018117699 6.19E-08 7.208561741 -0.074439171 DISSS(ph)LNSLADSNAR ddPTM_K562_Paclitaxel_30min_R1 1 DISSSLNSLADSNAR 15 0 O94776 O94776 MTA2 Metastasis-associated protein MTA2 1 DIS(0.017)S(0.194)S(0.789)LNS(0.001)LADSNAR 163.56 4.49E-05 38186000 1497.8 1380.6 1751.4 1426.1 1565.1 1182.1 1472.2 1908.7 1182.2 1636.5 TRUE FALSE 1518.773821 1531.338577 1309.237409 1334.636329 1778.293117 1391.728837 1751.542265 1746.544021 1295.755592 1302.980402 1.165615246 1.175258335 1.004802073 1.024295014 1.364788845 1.068111873 1.344258334 1.340422326 0.994455166 1 10.34759967 -6.720877328 24.9999966 1.204445876 1.092140935 0.087559542 0.138840361 321.2310079 197985.9382 0.040129735 0.051806726 1.90E-07 6.720877328 -0.112304941 DISTCPNSPSTPPSTPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 DISTCPNSPSTPPSTPSPR 19 0 Q07890-2;Q07890 Q07890-2 SOS2 Son of sevenless homolog 2 1 DISTCPNSPSTPPS(0.006)T(0.006)PS(0.988)PR 191.97 6.97E-102 0 592.5 706.91 819.63 612.9 832.38 542.95 596.47 817.97 533.85 885.7 TRUE FALSE 600.796828 784.0928244 612.7042694 573.5913372 945.7642483 639.2345591 709.6470687 748.4783429 585.1286778 705.1938538 0.851959819 1.111882669 0.868845164 0.813381078 1.341140799 0.906466436 1.00631488 1.061379561 0.829741602 1 9.461876091 -5.213664726 21.43341597 0.994218242 0.851956093 0.074807436 0.149018126 16163.32987 7250323.367 0.036159531 16.34896365 6.11E-06 5.213664726 -0.142262149 DITDPLSLNTCTDEGHVVLAS(ph)PLK ddPTM_K562_Paclitaxel_30min_R1 4 DITDPLSLNTCTDEGHVVLASPLK 24 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 DITDPLSLNTCTDEGHVVLAS(0.999)PLK;DITDPLSLNTCT(0.001)DEGHVVLAS(0.999)PLK;DITDPLSLNTCTDEGHVVLAS(1)PLK;DITDPLSLNT(0.001)CTDEGHVVLAS(0.999)PLK 110.33 1.43E-06 388416000 16207.6 14199.8 30179.9 19230.2 13994.4 11807.4 13642.4 20846.4 10666.7 27497.8 TRUE FALSE 16434.5564 15750.18218 22560.61098 17996.86104 15900.67421 13901.27661 16230.97418 19075.3682 11691.2842 21893.73327 0.750651166 0.719392257 1.030459754 0.822009697 0.726266006 0.634943179 0.741352513 0.871270695 0.534001399 1 14.41823036 DITDPLSLNTCTDEGHVVLAS(ph)PLKTGR ddPTM_K562_Paclitaxel_30min_R1 4 DITDPLSLNTCTDEGHVVLASPLKTGR 27 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 DITDPLSLNTCT(0.002)DEGHVVLAS(0.925)PLKT(0.073)GR;DITDPLSLNT(0.001)CT(0.026)DEGHVVLAS(0.53)PLKT(0.444)GR;DITDPLSLNTCTDEGHVVLAS(0.998)PLKT(0.002)GR;DITDPLSLNTCTDEGHVVLAS(0.978)PLKT(0.022)GR 118.63 3.24E-12 287373000 9906.5 7886.9 16350.7 10261 8220.9 7429.9 6656 11005.2 11636.3 14452.7 TRUE FALSE 10045.22156 8748.018414 12222.76356 9602.905387 9340.725761 8747.488444 7918.941253 10070.23957 12754.01861 11507.23181 0.872948571 0.760219187 1.06218105 0.834510467 0.811726566 0.760173132 0.688170829 0.875122683 1.108348109 1 13.4902532 -8.656534333 5.441436518 1.051236943 0.827723107 0.463206364 0.096079472 0.185912524 8.019976102 0.072606859 0.025821149 2.21E-09 8.656534333 -0.223513836 DITQDNS(ph)ELK ddPTM_K562_Paclitaxel_30min_R1 1 DITQDNSELK 10 0 Q6NXT6-2;Q6NXT6 Q6NXT6-2 TAPT1 Transmembrane anterior posterior transformation protein 1 homolog 1 DIT(0.003)QDNS(0.997)ELK 86.794 0.023376 9207600 1000.9 1035.4 1432 935.43 827.93 742 859.68 1254.2 837.92 965.38 TRUE FALSE 1014.915688 1148.448473 1070.473889 875.4357066 940.708083 873.5832818 1022.799792 1147.647882 918.4059599 768.6350261 1.32041301 1.494140176 1.392694651 1.138948496 1.223868352 1.136538477 1.330670289 1.4930986 1.194853121 1 9.58615491 DKAS(ph)GKLY(ph)PES(ph)EEDKEAPT(ph)GS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 DKASGKLYPESEEDKEAPTGSR 22 3 F2Z314;E7EWE7;Q03431 F2Z314 PTH1R Parathyroid hormone/parathyroid hormone-related peptide receptor 5 DKAS(1)GKLY(1)PES(1)EEDKEAPT(1)GS(1)R 47.618 0.019839 25835000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 DKDDDGGEDDDANCNLICGDEYGPETR ddPTM_K562_Paclitaxel_30min_R1 1 DKDDDGGEDDDANCNLICGDEYGPETR 27 1 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 140.21 4.82E-23 10644000 628.81 471.72 1417.7 686.11 537.37 572.63 485.36 498.77 457.72 897.61 FALSE TRUE 637.61528 523.2239849 1059.784101 642.1059755 610.5688917 674.1778904 577.4545263 456.3963753 501.6860511 714.6765893 0.892173173 0.732112948 1.482886269 0.898456708 0.854328938 0.943332831 0.807994182 0.638605465 0.701976333 1 9.48114672 -7.432385256 1.304876211 0.755611778 1.001843284 0.153789957 0.205230503 0.756762567 2.619168817 0.110307491 0.08587837 3.70E-08 7.432385256 0.246231507 DKPTYDEIFYTLS(ph)PVNGK ddPTM_K562_Paclitaxel_30min_R1 2 DKPTYDEIFYTLSPVNGK 18 1 A0A024R571;Q9H4M9 A0A024R571 EHD1 EH domain-containing protein 1 1 DKPTYDEIFYTLS(1)PVNGK;DKPTYDEIFYTLS(1)PVNGK 139.43 4.76E-11 77792000 8854 6559.9 20100.3 9330 6237.1 5724.6 6152.6 11101.5 8600.3 15138.2 TRUE FALSE 8977.983317 7276.132066 15025.73067 8731.61556 7086.698615 6739.777433 7320.023731 10158.35828 9426.397242 12053.02653 0.74487377 0.603676765 1.246635493 0.724433447 0.587960094 0.559177184 0.607318312 0.842805602 0.7820772 1 13.55710783 -11.39242581 8.298954448 1.00000233 0.743202368 0.140063773 0.190034033 8.62E-06 6.31E-07 0.193607852 0.046956375 4.05E-12 11.39242581 -0.256799962 DKS(ph)PVREPIDNLTPEER ddPTM_K562_Paclitaxel_30min_R1 2 DKSPVREPIDNLTPEER 17 2 G3XAC6;Q14498-2;Q14498;Q5QP22;Q5QP23;H0Y4X3;Q14498-3 G3XAC6 RBM39 RNA-binding protein 39 1 DKS(1)PVREPIDNLTPEER;DKS(0.999)PVREPIDNLT(0.001)PEER 116.04 0.0018537 577824000 2641.9 2007.01 4940.2 2892.7 2290.1 1873.88 1915.44 3183.7 1902.38 4320.6 TRUE FALSE 2678.894751 2226.142139 3692.98541 2707.175169 2602.050392 2206.186307 2278.884741 2913.224813 2085.112099 3440.059348 0.778735039 0.647123178 1.07352375 0.786955949 0.756396948 0.641322165 0.662455065 0.846853068 0.606126781 1 11.74821774 -6.523893678 19.86238879 0.737883489 0.833812092 0.054067537 0.144444958 6.652618533 130135.8119 0.041531771 0.054408909 2.99E-07 6.523893678 0.095928603 DKSFSDQRS(ph)TSVSCHET(ph)RR ddPTM_K562_Paclitaxel_30min_R1 1 DKSFSDQRSTSVSCHETRR 19 3 H3BMR9 H3BMR9 KARS 2 DKS(0.001)FS(0.01)DQRS(0.328)T(0.328)S(0.312)VS(0.134)CHET(0.888)RR 51.495 0.024879 14836000 705.16 888.01 897.06 788.18 834.35 831.76 809.65 1090.2 743.31 1137 TRUE FALSE 715.0344156 984.9659349 670.5861083 737.6296626 948.0025957 979.2609575 963.2768608 997.5807052 814.7082467 905.2787759 0.789849972 1.088024994 0.740750945 0.814809407 1.047194103 1.081723093 1.064066547 1.101959674 0.899952886 1 9.822218321 -6.770804807 24.91525429 1.041621944 0.866362991 0.416188252 0.100503991 186.7607439 496846.3126 0.030872088 0.035472271 1.70E-07 6.770804807 -0.175258953 DLASPLIGRS(ph) ddPTM_K562_Paclitaxel_30min_R1 1 DLASPLIGRS 10 1 H0YMP3;O95067 H0YMP3 CCNB2 G2/mitotic-specific cyclin-B2 1 DLASPLIGRS(1) 100.04 0.019249 5797500 1909.8 2008.3 2150.2 2190.9 1894.4 1641.6 1837.1 2171.2 1436.5 2846.8 TRUE FALSE 1936.543092 2227.572986 1607.355417 2050.38548 2152.449352 1932.714711 2185.680135 1986.743008 1574.482243 2266.620597 0.854374611 0.982772762 0.709141803 0.904600215 0.949629309 0.852685585 0.964290247 0.876522083 0.694638637 1 11.14632721 -4.946798916 16.06899646 0.8793193 0.67593852 0.006052063 0.100922565 21498105.91 157870415.8 0.024284411 138498638.9 1.13E-05 4.946798916 -0.20338078 DLAVPAALT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 DLAVPAALTPR 11 0 Q8TEM1 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 1 DLAVPAALT(1)PR;DLAVPAALT(1)PR;DLAVPAALT(1)PR 122.66 0.0055957 284664000 15877.9 12310.2 16526.9 11794.1 7658.7 10828.9 12080.3 10155.7 7678.6 15340.9 TRUE FALSE 16100.23959 13654.26927 12354.47969 11037.67921 8701.944603 12749.25337 14372.47386 9292.909895 8416.163839 12214.41616 1.318134193 1.117881452 1.011467067 0.903659992 0.7124323 1.043787374 1.1766812 0.760814907 0.689035295 1 13.57629728 -5.511322782 1.410661771 0.89920064 1.382063778 0.460151556 0.144573675 0.774684389 1.978494758 0.046115596 0.467623855 3.08E-06 5.511322782 0.482863138 DLDAPDDVDFF ddPTM_K562_Paclitaxel_30min_R1 1 DLDAPDDVDFF 11 0 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;H7C3A1 Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 0 114.93 3.19E-06 0 1749.6 1546.2 2347.9 1809 1338.7 1676.1 1466.9 1761 1614 2252.9 FALSE TRUE 1774.099798 1715.019345 1755.143607 1692.978837 1521.053604 1973.332801 1745.236617 1611.392058 1769.031912 1793.757743 0.989040914 0.956104218 0.978473048 0.94381688 0.847970474 1.100111098 0.972950012 0.898333158 0.986215624 1 10.80876934 -7.243353243 24.99933983 0.984007075 0.945811726 0.14089179 0.058156196 2275.780138 3145672.899 0.019966646 0.019932676 5.71E-08 7.243353243 -0.038195349 DLDGTSWRDPGPAQS(ph)PDVHWMGTGALR ddPTM_K562_Paclitaxel_30min_R1 1 DLDGTSWRDPGPAQSPDVHWMGTGALR 27 1 P59923 P59923 ZNF445 Zinc finger protein 445 1 DLDGT(0.026)S(0.026)WRDPGPAQS(0.949)PDVHWMGTGALR 58.054 0.0024275 7828300 790.71 726.39 881.66 743.35 783.47 610.21 569.16 752.16 907.44 833.18 TRUE FALSE 801.7823795 805.6997167 659.0740288 695.6748581 890.1918783 718.4221757 677.1551388 688.2593132 994.6036665 663.3774587 1.208636756 1.214541896 0.993512849 1.048686308 1.341908542 1.082976466 1.02076899 1.037507838 1.499302778 1 9.37368618 DLDLLASVPS(ph)PSSSGSR ddPTM_K562_Paclitaxel_30min_R1 4 DLDLLASVPSPSSSGSR 17 0 A0A087WV97;Q8WU79-3;Q8WU79-2;Q8WU79 A0A087WV97 SMAP2 Stromal membrane-associated protein 2 1 DLDLLASVPS(0.995)PS(0.004)SSGS(0.001)R;DLDLLASVPS(0.957)PS(0.04)S(0.002)S(0.001)GSR;DLDLLASVPS(0.965)PS(0.034)SSGSR;DLDLLASVPS(0.999)PS(0.001)SSGSR 249.89 4.71E-64 366325000 13173.8 13099.1 18516.6 15874.6 12873.4 11720.3 14383.2 16276.7 8391.3 19257.8 TRUE FALSE 13358.27384 14529.30404 13841.85532 14856.47421 14626.97503 13798.73064 17112.33711 14893.89274 9197.321858 15333.04979 0.871207883 0.947580829 0.902746388 0.968918409 0.953950794 0.899933857 1.116042624 0.971358793 0.599836431 1 13.90435706 -11.10770639 4.496623006 1.000006175 0.925154698 0.035367134 0.123166913 180793103 4.010795178 13618.67156 0.029411903 7.80E-12 11.10770639 -0.074851477 DLEAEHVEVEDTTLNR ddPTM_K562_Paclitaxel_30min_R1 2 DLEAEHVEVEDTTLNR 16 0 H3BV85;H3BTW0;A0A0B4J295;A0A087WZT3;H3BVE0;Q9H3K6-2;Q9H3K6 H3BV85 BOLA2B;BOLA2 BolA-like protein 2 0 ; 118.2 0.0009218 17635900 3228.8 3255.8 5137 3716.8 3219.3 3290.9 2794.6 3467.2 3499.1 4806.7 FALSE TRUE 3274.013162 3611.279254 3840.100816 3478.421084 3657.823163 3874.494908 3324.860761 3172.639718 3835.204189 3827.091902 0.855483288 0.943609233 1.003399164 0.908894057 0.955770924 1.012386169 0.868769511 0.828994913 1.0021197 1 11.90203283 -6.255399095 0.004486097 1.860087272 8.40E-08 0.057456612 0.063249796 128484.8153 129.5724155 26262.8336 27467.07133 5.55E-07 6.255399095 -1.860087188 DLEEWNQR ddPTM_K562_Paclitaxel_30min_R1 1 DLEEWNQR 8 0 P09497-2;P09497 P09497-2 CLTB Clathrin light chain B 0 104.06 0.01092 0 1210.7 923.48 1455.7 1365.6 988.52 963.38 996.31 1289.5 1019.1 1237.3 FALSE TRUE 1227.653535 1024.308669 1088.190531 1278.016528 1123.17316 1134.221916 1185.354621 1179.948926 1116.989108 985.1375808 1.246174706 1.039762049 1.104607673 1.297297508 1.140118072 1.151333518 1.203237644 1.197750395 1.133840725 1 9.94418141 -9.091972224 6.288101513 1.000001991 1.169118028 0.365291155 0.068122004 1.324376648 89.8332453 0.066311289 0.017196137 8.09E-10 9.091972224 0.169116037 DLELALS(ph)PIHNSSALPTTGR ddPTM_K562_Paclitaxel_30min_R1 2 DLELALSPIHNSSALPTTGR 20 0 A0A087WUU7;Q96GX5-2;Q96GX5-3;Q96GX5 A0A087WUU7 MASTL Serine/threonine-protein kinase greatwall 1 DLELALS(1)PIHNSSALPTTGR;DLELALS(1)PIHNSSALPTTGR 98.067 0.00059805 197159000 3959.9 3197.4 4909.6 4117.8 3499.4 3594.1 3411.7 3937 3635.9 4248.4 TRUE FALSE 4015.350817 3546.502945 3670.110759 3853.702739 3976.077525 4231.463171 4059.052265 3602.527276 3985.144441 3382.573748 1.187069704 1.04846286 1.085005393 1.139281218 1.175459228 1.25095962 1.199989288 1.065025494 1.178139706 1 11.72390567 -4.849576418 19.61137928 1.13465355 47.90943853 0.047714724 0.073652457 2824.363912 368051.8474 0.018269163 2812.134941 1.41E-05 4.849576418 46.77478498 DLFAFQES(ph)PPR ddPTM_K562_Paclitaxel_30min_R1 1 DLFAFQESPPR 11 0 E7EX48;P51957-3;P51957-2;P51957 E7EX48 NEK4 Serine/threonine-protein kinase Nek4 1 DLFAFQES(1)PPR 107.93 0.0058913 10314000 875.03 750.04 1178 969.71 884.73 761.67 773.06 964.13 581.04 1124.9 TRUE FALSE 887.2831197 831.9319037 880.5993307 907.5171409 1005.245205 896.7414801 919.7440994 882.2211386 636.8514882 895.6447625 0.990664108 0.928863695 0.983201563 1.013255678 1.122370438 1.001224501 1.026907249 0.985012335 0.711053662 1 9.806782823 -8.552340072 24.95452088 0.853028594 1.00929634 0.371800477 0.079013739 202.3469215 171389.453 0.051436652 0.019441825 2.80E-09 8.552340072 0.156267746 DLFDLNS(ph)SEEDDTEGFSER ddPTM_K562_Paclitaxel_30min_R1 2 DLFDLNSSEEDDTEGFSER 19 0 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 DLFDLNS(0.887)S(0.113)EEDDTEGFSER;DLFDLNS(0.976)S(0.024)EEDDTEGFSER 219.95 7.77E-31 68820000 3845.7 3564 5337.4 4215.6 3362.5 3088.87 2947 4624.6 3222.2 5446.9 TRUE FALSE 3899.551665 3953.129573 3989.907358 3945.230284 3820.529428 3636.637725 3506.177866 4231.711364 3531.706707 4336.81879 0.8991733 0.911527496 0.920007856 0.909706048 0.880952056 0.838549614 0.808467689 0.975763934 0.814354226 1 12.08242145 -6.765636347 6.119457693 0.878729484 0.911063443 0.027960224 0.059194992 0.478668823 68.77470871 0.017365315 0.020958933 1.72E-07 6.765636347 0.032333959 DLFDLNSS(ph)EEDDTEGFSER ddPTM_K562_Paclitaxel_30min_R1 1 DLFDLNSSEEDDTEGFSER 19 0 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 DLFDLNS(0.244)S(0.756)EEDDTEGFSER 234.51 1.31E-46 10610000 580.2 544.75 824.1 727.54 737.66 619.58 652.46 648.68 564.15 690.29 TRUE FALSE 588.3245901 604.2276472 616.0457627 680.8788407 838.1417807 729.4538137 776.2608789 593.5705851 618.3391282 549.6085191 1.070442996 1.099378241 1.120881029 1.238843317 1.524979602 1.327224358 1.412388731 1.079987963 1.125053755 1 9.102260556 -4.317068409 14.27871171 1.216700645 1.180648007 0 0.16261041 0 0 0.03998988 0 4.82E-05 4.317068409 -0.036052638 DLFDYS(ph)PPLHK ddPTM_K562_Paclitaxel_30min_R1 1 DLFDYSPPLHK 11 0 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 DLFDY(0.001)S(0.999)PPLHK 78.529 0.028851 30110000 2373.1 2049.5 4038.6 2515.6 2246.6 1954.2 1858.1 2742.9 1831.1 3569.9 TRUE FALSE 2406.330722 2273.271341 3019.005481 2354.260675 2552.624955 2300.749932 2210.664775 2509.873524 2006.985337 2842.35242 0.846598298 0.79978518 1.062150302 0.828278949 0.898067719 0.809452732 0.777758859 0.883026857 0.706100103 1 11.47286973 -7.258405038 24.30471577 0.824362585 0.8886031 0.060615726 0.097041468 459.9973227 3684530.219 0.031480313 0.030186265 5.52E-08 7.258405038 0.064240515 DLFSLDSEDPSPAS(ph)PPLR ddPTM_K562_Paclitaxel_30min_R1 4 DLFSLDSEDPSPASPPLR 18 0 H3BTX0;Q9BTK6 H3BTX0 PAGR1 PAXIP1-associated glutamate-rich protein 1 1 DLFSLDSEDPSPAS(1)PPLR;DLFSLDSEDPS(0.001)PAS(0.999)PPLR;DLFSLDSEDPSPAS(1)PPLR;DLFSLDSEDPSPAS(1)PPLR 255.23 3.93E-80 320979300 8519.7 8297.3 11226.1 9200 7334.4 7571.4 8077.2 9723.9 8119.3 10644.2 TRUE FALSE 8639.002086 9203.227274 8391.932212 8609.953178 8333.469452 8914.081482 9609.806534 8897.794 8899.195043 8474.906197 1.019362561 1.085938541 0.990209451 1.015934923 0.983311114 1.051820666 1.133913026 1.049898818 1.050064135 1 13.04898168 -7.510269798 24.98736458 1.066947171 1.02057422 0.173104604 0.04018467 946.3681824 1875442.114 0.014641835 0.012314171 3.09E-08 7.510269798 -0.046372951 DLGHPVEEEDELES(ph)GDQEDEDDESEDPGKDLDHI ddPTM_K562_Paclitaxel_30min_R1 1 DLGHPVEEEDELESGDQEDEDDESEDPGKDLDHI 34 1 O60763;O60763-2 O60763 USO1 General vesicular transport factor p115 1 DLGHPVEEEDELES(0.995)GDQEDEDDES(0.005)EDPGKDLDHI 76.267 7.32E-06 10481000 993.45 617.05 1387 1056.6 867.37 681.08 696.21 920.34 838.48 1216.8 TRUE FALSE 1007.361365 684.4216057 1036.834696 988.8344052 985.5204787 801.8599752 828.312213 842.1513724 919.0197504 968.8154921 1.039786598 0.706451963 1.070208625 1.020663288 1.017242691 0.827670472 0.854974162 0.86925878 0.948601419 1 9.920078125 -7.257419139 24.93987947 0.889109216 0.96446574 0.095799919 0.105137778 831.3633734 5157436.847 0.035747998 0.034501524 5.53E-08 7.257419139 0.075356524 DLGSHDNLS(ph)PPFVNSR ddPTM_K562_Paclitaxel_30min_R1 2 DLGSHDNLSPPFVNSR 16 0 A0A1B0GVB8;P15884-12;P15884-15;P15884-5;P15884-4;P15884-10;P15884-13;P15884-14;P15884;P15884-3;A0A1B0GVR6;H3BTP3;H3BPJ7;E9PH57;H3BT24;H3BP59;G0LNT4;A0A0D9SEX8;H3BMC8;H3BTZ0;A0A0D9SGE5;A0A1B0GTP2;H3BTC3;H3BUQ3;A0A0D9SG55;A0A0D9SG61;A0A075B723;H3BNI2 A0A1B0GVB8 TCF4 Transcription factor 4 1 DLGSHDNLS(1)PPFVNSR;DLGSHDNLS(1)PPFVNSR 115.91 0.00046761 65296000 5025.4 4688.9 6281.8 5921.7 5134 4693.6 4294.1 5406 4985.1 6008.3 TRUE FALSE 5095.771105 5200.849959 4695.881898 5541.908667 5833.337719 5525.944059 5108.883058 4946.726557 5463.941129 4783.805162 1.065212928 1.087178466 0.981620643 1.158472906 1.219392831 1.155135686 1.067953833 1.034056863 1.14217468 1 12.22394292 -6.275321423 24.98894803 1.117004149 1.048921451 0.170433766 0.065973663 1375.45415 2475938.487 0.019676956 0.029365516 5.30E-07 6.275321423 -0.068082697 DLGTHMMHLS(ph)GNDS(ph)GVRLGQK ddPTM_K562_Paclitaxel_30min_R1 1 DLGTHMMHLSGNDSGVRLGQK 21 1 Q6ZUB0;P0C874 Q6ZUB0 SPATA31D4;SPATA31D3 Putative spermatogenesis-associated protein 31D4;Putative spermatogenesis-associated protein 31D3 2 DLGT(0.037)HMMHLS(0.963)GNDS(1)GVRLGQK 44.831 0.026182 39743000 2149.5 2236.1 2385.6 2688.5 2542.9 2349 1834.1 2228.7 2092.3 2554.8 TRUE FALSE 2179.599632 2480.24496 1783.325775 2516.071643 2889.286032 2765.562168 2182.1109 2039.358024 2293.274764 2034.130358 1.071514234 1.219314657 0.876701814 1.236927434 1.420403575 1.359579615 1.0727488 1.002569976 1.127398131 1 10.99019642 -7.972662502 24.76964091 1.046522201 1.197458381 0.201344771 0.14401635 351.0631278 318086.4854 0.066256588 0.044669203 1.06E-08 7.972662502 0.15093618 DLHDANTDLIGR ddPTM_K562_Paclitaxel_30min_R1 2 DLHDANTDLIGR 12 0 Q5T8R3;Q5T8R5;P53985-2;P53985 Q5T8R3 SLC16A1 Monocarboxylate transporter 1 0 ; 124.48 0.0035298 18473700 1911.29 1842.98 2167.3 2175.2 2184.7 1806.92 1968.81 2572.6 1557.21 2588.5 FALSE TRUE 1938.053957 2044.202789 1620.13831 2035.692408 2482.293127 2127.351892 2342.38142 2354.041572 1706.786978 2060.962279 0.940363624 0.991868124 0.786107697 0.9877388 1.204434042 1.03221292 1.136547448 1.142205074 0.828150518 1 11.00910238 -6.523814942 24.99926611 1.069717658 0.91006107 0.280617809 0.107455139 37.1855319 992941.1985 0.030952654 0.040306392 2.99E-07 6.523814942 -0.159656588 DLHILPPPLIPT(ph)PPPDDPR ddPTM_K562_Paclitaxel_30min_R1 3 DLHILPPPLIPTPPPDDPR 19 0 Q9NRS6;E9PK26;E9PMW6;Q9NRS6-2 Q9NRS6 SNX15 Sorting nexin-15 1 DLHILPPPLIPT(1)PPPDDPR;DLHILPPPLIPT(1)PPPDDPR;DLHILPPPLIPT(1)PPPDDPR 108.96 0.00049185 39993100 7111.6 7074.2 8627.1 7667.6 7130.2 6562.1 7654.2 8950.6 4998.5 9381.5 TRUE FALSE 7211.184341 7846.585079 6449.081906 7175.834455 8101.453955 7725.796299 9106.544492 8190.190662 5478.628259 7469.54515 0.96541144 1.05047696 0.863383483 0.960678905 1.08459803 1.034306125 1.219156496 1.096477831 0.733462098 1 12.86680468 -6.739320244 22.49634348 1.042697081 0.959550747 0.061027957 0.122823879 200.6054735 204022.3615 0.03709071 0.047819254 1.82E-07 6.739320244 -0.083146334 DLHILPPPLIPT(ph)PPPDDPRLSQLLPAER ddPTM_K562_Paclitaxel_30min_R1 1 DLHILPPPLIPTPPPDDPRLSQLLPAER 28 1 Q9NRS6;E9PK26;E9PMW6;Q9NRS6-2 Q9NRS6 SNX15 Sorting nexin-15 1 DLHILPPPLIPT(1)PPPDDPRLSQLLPAER 69.619 0.00068441 10911000 772.8 976.64 1145.1 904.8 831.61 1041.2 1138.3 1118.1 1069.7 1198 TRUE FALSE 783.6215843 1083.272858 856.0053426 846.7701777 944.8893613 1225.842201 1354.286483 1023.110426 1172.449465 953.8469424 0.821538079 1.135688348 0.897424214 0.887742194 0.990608995 1.285156084 1.4198153 1.072614882 1.229179874 1 9.897613975 -7.172828722 5.302635973 1.218937349 0.947246127 0.484463451 0.131240789 0.192798267 8.825718702 0.043434109 0.043379697 6.72E-08 7.172828722 -0.271691222 DLHQPS(ph)LSPASPHSQGFER ddPTM_K562_Paclitaxel_30min_R1 1 DLHQPSLSPASPHSQGFER 19 0 Q9BZF1-3;Q9BZF1-2;Q9BZF1;F8VVD3;F8VVE7;F8VZ43;F8VQX7 Q9BZF1-3 OSBPL8 Oxysterol-binding protein-related protein 8;Oxysterol-binding protein 1 DLHQPS(0.957)LS(0.043)PASPHSQGFER 107.03 0.00039632 32313000 1708 1682.9 1956.1 2006.9 1646.5 1693.4 1382.4 1968.4 1305.2 2140.6 TRUE FALSE 1731.91727 1866.644713 1462.258362 1878.186417 1870.781175 1993.700713 1644.703183 1801.172134 1430.570292 1704.344545 1.016177905 1.095227323 0.857959364 1.101999254 1.097654333 1.16977563 0.965006277 1.056812215 0.839366838 1 10.7350013 -8.739820146 24.78586437 0.919683394 1.045648664 0.240657549 0.089090218 263.0650098 301598.9781 0.06015057 0.02268887 1.82E-09 8.739820146 0.125965271 DLHQPSLS(ph)PASPHSQGFER ddPTM_K562_Paclitaxel_30min_R1 1 DLHQPSLSPASPHSQGFER 19 0 Q9BZF1-3;Q9BZF1-2;Q9BZF1;F8VVD3;F8VVE7;F8VZ43;F8VQX7 Q9BZF1-3 OSBPL8 Oxysterol-binding protein-related protein 8;Oxysterol-binding protein 1 DLHQPS(0.198)LS(0.802)PASPHSQGFER 92.439 0.0009768 32229000 914.16 1075.1 1362.5 1167.7 1047.9 963.5 1161.2 1092.7 805.53 1557.9 TRUE FALSE 926.9610604 1192.483054 1018.520024 1092.808948 1190.641721 1134.363197 1381.531638 999.8683146 882.9047557 1240.399125 0.747308702 0.961370441 0.821122817 0.881013963 0.959885973 0.91451467 1.11377992 0.806085956 0.711790857 1 10.2765887 -5.248259855 23.74258276 0.906409283 0.747308492 0.169300346 0.106568193 2076.275057 3740225.258 0.027099944 0.469197473 5.65E-06 5.248259855 -0.159100791 DLIHDQDEDEEEEEGQR ddPTM_K562_Paclitaxel_30min_R1 2 DLIHDQDEDEEEEEGQR 17 0 F2Z2K0;Q9UNZ2-4;Q9UNZ2;R4GNE6;Q9UNZ2-5 F2Z2K0 NSFL1C NSFL1 cofactor p47 0 ; 205.12 6.07E-17 96769000 6648 5625.3 8065.2 7127 5663.7 5589.1 5178.8 7198 4340.7 7350.6 FALSE TRUE 6741.092511 6239.489278 6029.040511 6669.906119 6435.191827 6580.24841 6161.450265 6586.484971 4757.64363 5852.543685 1.151822673 1.066115797 1.030157285 1.139659348 1.099554685 1.124339905 1.052781593 1.12540552 0.812918944 1 12.51484808 -8.749187547 24.99243509 0.906459457 1.096070653 0.653761795 0.055942469 108.2578529 220837.5049 0.03579282 0.013310196 1.78E-09 8.749187547 0.189611196 DLIHDQDEDEEEEEGQRFYAGGSER ddPTM_K562_Paclitaxel_30min_R1 2 DLIHDQDEDEEEEEGQRFYAGGSER 25 1 F2Z2K0;Q9UNZ2-4;Q9UNZ2 F2Z2K0 NSFL1C NSFL1 cofactor p47 0 ; 116.98 4.42E-08 31245000 4022.01 3928.21 6333.37 4775.2 3480.44 3916.85 3086.85 3657.89 5851.42 4207.28 FALSE TRUE 4078.330549 4357.105252 4734.432413 4468.940045 3954.534852 4611.448352 3672.563673 3347.129413 6413.475036 3349.834027 1.217472423 1.300692875 1.41333343 1.33407805 1.180516653 1.376619951 1.096341981 0.999192613 1.914565016 1 11.7098739 DLISHDEMFSDIYK ddPTM_K562_Paclitaxel_30min_R1 3 DLISHDEMFSDIYK 14 0 A0A0B4J2C3;Q5W0H4;P13693 A0A0B4J2C3 TPT1 Translationally-controlled tumor protein 0 ;; 127.79 1.19E-09 11257000 6983.7 6343.8 11722.5 8133.8 6121.5 5879.8 5607.5 8797.7 6631 11372.8 FALSE TRUE 7081.493347 7036.437537 8763.009893 7612.134474 6955.351938 6922.499974 6671.493852 8050.280471 7267.937178 9055.017117 0.782051901 0.777076117 0.967751886 0.840653792 0.768121346 0.764493306 0.736773191 0.889040889 0.802642014 1 13.14450165 -10.00117954 1.105272002 1.001092084 0.813807717 0.418013944 0.065648854 11.16625981 11.16506691 0.114018436 0.020805608 9.97E-11 10.00117954 -0.187284366 DLLHNEDRHDDYFQER ddPTM_K562_Paclitaxel_30min_R1 1 DLLHNEDRHDDYFQER 16 1 Q8N684-2;Q8N684;Q8N684-3 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 0 85.006 0.015092 37456000 2011.6 1892.9 2506.8 2319.7 1841.5 1460.3 1669.2 2457.7 1737.2 2687.1 FALSE TRUE 2039.768606 2099.573223 1873.927336 2170.924825 2092.343477 1719.263701 1985.921986 2248.903045 1904.065822 2139.467545 0.953400116 0.981353154 0.875884909 1.014703322 0.977973927 0.803594196 0.928231882 1.051150811 0.889971819 1 11.06303608 -11.19867697 3.801738914 1.000050165 0.942990724 0.061138868 0.068270467 17479358.58 17162824.03 6216.311143 0.016619248 6.33E-12 11.19867697 -0.057059441 DLLSDLQDIS(ph)DSER ddPTM_K562_Paclitaxel_30min_R1 4 DLLSDLQDISDSER 14 0 P21127;A0A0D9SEN2;A0A0D9SER5;A0A0D9SEI3;P21127-8;P21127-2;P21127-6;P21127-3;P21127-9;Q5QPR3;Q5QPR4;Q9UQ88;Q9UQ88-2;Q9UQ88-3;Q9UQ88-4;P21127-10;Q9UQ88-9;P21127-5;E7ESP2;J3KS35 P21127 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 DLLSDLQDIS(0.998)DS(0.002)ER;DLLSDLQDIS(0.921)DS(0.079)ER;DLLSDLQDIS(0.998)DS(0.002)ER;DLLSDLQDIS(0.92)DS(0.08)ER 242.1 4.05E-46 212824000 10531.3 9102.2 14195.8 11446.2 10272.8 9067.9 9602 12900.7 6302.9 13674.3 TRUE FALSE 10678.77069 10096.00898 10611.89472 10712.09196 11672.12928 10675.96475 11423.92937 11804.70501 6908.321707 10887.47015 0.980831225 0.927305318 0.974688754 0.983891741 1.072069922 0.980573503 1.049273083 1.084246831 0.634520381 1 13.41038114 -8.739903378 24.99584763 0.817259801 1.004881451 0.394227482 0.09386751 193.137076 224166.7815 0.059625993 0.022491466 1.82E-09 8.739903378 0.187621649 DLLSDLQDISDS(ph)ER ddPTM_K562_Paclitaxel_30min_R1 1 DLLSDLQDISDSER 14 0 P21127;A0A0D9SEN2;A0A0D9SER5;A0A0D9SEI3;P21127-8;P21127-2;P21127-6;P21127-3;P21127-9;Q5QPR3;Q5QPR4;Q9UQ88;Q9UQ88-2;Q9UQ88-3;Q9UQ88-4;P21127-10;Q9UQ88-9;P21127-5;E7ESP2;J3KS35 P21127 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 DLLSDLQDIS(0.048)DS(0.952)ER 148.7 4.21E-05 10284000 862.09 729.73 1267.5 799.69 818.26 836.74 747.45 869.02 646.05 1216.6 TRUE FALSE 874.1619198 809.4043892 947.5039488 748.4014627 929.7208653 985.1240906 889.2747355 795.1913267 708.1059891 968.6562522 0.902448023 0.83559507 0.978163251 0.772618213 0.959804743 1.017000704 0.918049859 0.820922102 0.73101886 1 9.919840976 -11.15425759 4.765004856 1.000010681 0.885559306 0.140788679 0.08718854 1.02E-05 1.82E-06 0.087344707 0.021182226 7.01E-12 11.15425759 -0.114451375 DLNYCFSGMSDHR ddPTM_K562_Paclitaxel_30min_R1 2 DLNYCFSGMSDHR 13 0 P31943;G8JLB6;E9PCY7;P55795;H0YBD7;H0YBG7;H0YB39 P31943 HNRNPH1;HNRNPH2 "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2" 0 ; 160.87 0.00061366 111060000 5294.8 4884.5 6456.2 5406.1 4676.1 4711 5590.5 6817.5 4413.8 7165.4 FALSE TRUE 5368.943536 5417.806228 4826.252461 5059.376943 5313.063987 5546.429704 6651.268191 6238.310821 4837.765211 5705.087547 0.941079956 0.949644713 0.845955898 0.886818458 0.931285268 0.972190113 1.165848576 1.093464521 0.847973878 1 12.47803331 -7.409205043 3.610295436 1.03773006 0.908186479 0.302846831 0.080960183 0.287501178 6.810678297 0.031126029 0.026726371 3.90E-08 7.409205043 -0.129543581 DLPPPQEASAT(ph)QT(ph)WRS(ph)VT(ph)ELK ddPTM_K562_Paclitaxel_30min_R1 1 DLPPPQEASATQTWRSVTELK 21 1 H7C342 H7C342 DDT 4 DLPPPQEAS(0.198)AT(0.803)QT(0.999)WRS(1)VT(1)ELK 55.662 0.018098 15738000 152.04 246.94 489.48 380.72 347.94 264.96 236.98 277.25 344.99 299.06 TRUE FALSE 154.1690291 273.9017443 365.9047202 356.3023232 395.3353187 311.9469358 281.9457179 253.695882 378.127831 238.1114078 0.647465951 1.150309205 1.536695463 1.496368135 1.660295583 1.310088158 1.1840916 1.065450346 1.588029042 1 7.895492931 -5.342549522 3.073501991 1.365258591 0.595011267 0.50356966 0.211499039 0.249791348 3.739773663 0.055880272 0.41611292 4.54E-06 5.342549522 -0.770247324 DLPTIPGVTSPSSDEPPMEAS(ph)QSHLRNSPEDKR ddPTM_K562_Paclitaxel_30min_R1 1 DLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKR 33 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 DLPTIPGVTSPS(0.001)S(0.003)DEPPMEAS(0.332)QS(0.332)HLRNS(0.332)PEDKR 43.992 0.01235 36968000 1676.5 1411.6 3422.9 1983.6 1659.1 1272.1 1212.7 1848.6 1092.8 2841.7 TRUE FALSE 1699.976172 1565.723262 2558.746561 1856.380774 1885.097509 1497.689074 1442.803494 1691.549891 1197.768323 2262.55998 0.751350765 0.692014035 1.130907726 0.820478038 0.833170181 0.661944473 0.637686296 0.747626541 0.529386329 1 11.14374032 -7.186529267 5.121006622 0.694874187 0.853586891 0.142245727 0.155694519 0.381320404 18.34569523 0.051398605 0.051151877 6.51E-08 7.186529267 0.158712703 DLPTIPGVTSPSSDEPPMEASQS(ph)HLRNSPEDKR ddPTM_K562_Paclitaxel_30min_R1 1 DLPTIPGVTSPSSDEPPMEASQSHLRNSPEDKR 33 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 DLPTIPGVTSPSSDEPPMEAS(0.101)QS(0.449)HLRNS(0.449)PEDKR 70.213 4.31E-05 46924000 1428.1 1353.4 3370.6 2276.4 1411.9 1432.5 1265 1987.2 1061.5 2667.8 TRUE FALSE 1448.097806 1501.168789 2519.650343 2130.401893 1604.224684 1686.533762 1505.027146 1818.374956 1163.461818 2124.100896 0.681746243 0.706731395 1.186219707 1.00296643 0.755248815 0.793998894 0.708547861 0.856068071 0.547743198 1 11.05263658 -6.789229468 24.90331234 0.767171706 0.90185306 0.099635086 0.170928892 463.6805189 415511.738 0.054855264 0.062213361 1.62E-07 6.789229468 0.134681354 DLQEQDADAGS(ph)ER ddPTM_K562_Paclitaxel_30min_R1 2 DLQEQDADAGSER 13 0 A0A087WW12;A0A087WZ11;Q6P158-3;Q6P158-2;Q6P158 A0A087WW12 DHX57 Putative ATP-dependent RNA helicase DHX57 1 DLQEQDADAGS(1)ER;DLQEQDADAGS(1)ER 193.31 4.11E-05 44418000 4375.8 3900.6 4977.5 4004.6 3143.5 3295.8 4164.7 5917.1 3234.4 6067.4 TRUE FALSE 4437.0747 4326.480699 3720.868564 3747.76288 3571.69792 3880.263855 4954.930084 5414.405422 3545.078572 4830.86055 0.918485362 0.895592132 0.770228932 0.775796122 0.739350243 0.803224149 1.025682698 1.120795222 0.733839972 1 12.23806449 -7.7539118 24.99731587 0.980145747 0.813136261 0.336806491 0.104686191 187.8173554 623699.0813 0.040898933 0.031050431 1.76E-08 7.7539118 -0.167009486 DLS(ph)MSEEDQMMR ddPTM_K562_Paclitaxel_30min_R1 2 DLSMSEEDQMMR 12 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 DLS(0.992)MS(0.008)EEDQMMR;DLS(0.712)MS(0.288)EEDQMMR 115.24 6.91E-07 6010400 1302.4 1302.43 1927.75 1538.23 1020.86 1378.77 1240.61 1601.43 1465.91 1871.93 TRUE FALSE 1320.637618 1444.633712 1441.06567 1439.574813 1159.918415 1623.275501 1476.009271 1465.378526 1606.717205 1490.429638 0.886078473 0.969273339 0.96687937 0.965879083 0.77824433 1.089132596 0.990324691 0.983192019 1.078022849 1 10.54151255 -7.297520164 24.99996915 1.024720813 0.92228296 0.456839794 0.062180639 624.1266927 432448.2565 0.021889447 0.019305351 5.04E-08 7.297520164 -0.102437853 DLS(ph)PQHMVVR ddPTM_K562_Paclitaxel_30min_R1 1 DLSPQHMVVR 10 0 A0A2R8Y5E8;D6RB22;A0A2R8Y3N3;A0A2R8Y5P7;P49590-2;P49590 A0A2R8Y5E8 HARS2 "Probable histidine--tRNA ligase, mitochondrial" 1 DLS(1)PQHMVVR 98 0.0080747 15455000 3390.5 2677.2 4039.2 3318.9 2392.8 3008.2 2633.4 3340.9 2481.9 3419.9 TRUE FALSE 3437.977461 2969.50575 3019.454004 3106.040609 2718.73987 3541.662033 3133.073903 3057.069692 2720.297584 2722.922503 1.262605696 1.090558305 1.108901925 1.140701069 0.998463918 1.30068411 1.150629112 1.122716379 0.999035992 1 11.41094021 -8.724216394 4.06559391 0.995271804 1.145413887 0.355013753 0.079942531 0.235704699 7.951415895 0.066234399 0.020410774 1.89E-09 8.724216394 0.150142083 DLS(ph)QVDLGS(ph)EQS(ph)FRIHFSREDQAGK ddPTM_K562_Paclitaxel_30min_R1 1 DLSQVDLGSEQSFRIHFSREDQAGK 25 2 H0YFT1 H0YFT1 NLRC5 3 DLS(1)QVDLGS(1)EQS(0.996)FRIHFS(0.004)REDQAGK 41.76 0.021862 10435000 1989.8 2153.2 1698.3 2456.3 2053.3 2285 2495.6 2927.7 1906.8 2493.5 TRUE FALSE 2017.663339 2388.293658 1269.543161 2298.763912 2332.994223 2690.212667 2969.127072 2678.973611 2089.95666 1985.323331 1.016289542 1.202974659 0.639464182 1.157878858 1.175120539 1.355050145 1.495538296 1.349389074 1.05270342 1 10.95515827 -6.630392813 3.081293102 1.277331878 0.970383499 0.283364788 0.19208893 0.296609841 5.62788496 0.05997076 0.080594858 2.34E-07 6.630392813 -0.306948379 DLSYCLSGMYDHR ddPTM_K562_Paclitaxel_30min_R1 2 DLSYCLSGMYDHR 13 0 P52597 P52597 HNRNPF "Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed" 0 ; 122.52 0.0026608 29255000 5869 4951.2 8196 6159.5 4815.2 5109.1 5627.1 7723.4 5280.1 8782.5 FALSE TRUE 5951.184107 5491.78876 6126.818433 5764.457239 5471.111762 6015.12715 6694.81285 7067.248962 5787.277197 6992.621679 0.851066221 0.785369066 0.876183314 0.824362807 0.782412093 0.86021058 0.957410991 1.010672289 0.827626241 1 12.77161774 -7.651932115 4.118482067 0.94976614 0.824434172 0.554440343 0.052967511 0.164603221 5.066140015 0.020436351 0.01537359 2.23E-08 7.651932115 -0.125331967 DLT(ph)HSDSESSLHMSDR ddPTM_K562_Paclitaxel_30min_R1 1 DLTHSDSESSLHMSDR 16 0 E9PNJ4;Q13586;H0YDB2 E9PNJ4 STIM1 Stromal interaction molecule 1 1 DLT(0.99)HS(0.01)DSESSLHMSDR 103.99 0.0022135 33219000 2544.6 1949.2 3763.7 2956.6 2620.3 2274.6 2243.7 2694.9 2965.4 2920.1 TRUE FALSE 2580.232251 2162.020248 2813.507386 2766.976909 2977.229222 2677.968373 2669.430362 2465.951424 3250.23992 2324.982017 1.109785896 0.929908374 1.210120063 1.1901068 1.280538602 1.151823263 1.148150972 1.060632472 1.397963466 1 11.18300384 -5.775682741 24.99806742 1.183902127 1.019847122 0.248810794 0.111079854 259.2384757 454982.6436 0.027397165 0.057462704 1.68E-06 5.775682741 -0.164055005 DLTHS(ph)DSESSLHMSDR ddPTM_K562_Paclitaxel_30min_R1 3 DLTHSDSESSLHMSDR 16 0 E9PNJ4;Q13586;H0YDB2 E9PNJ4 STIM1 Stromal interaction molecule 1 1 DLT(0.004)HS(0.991)DS(0.005)ESSLHMSDR;DLTHS(0.992)DS(0.008)ESSLHMSDR;DLT(0.007)HS(0.988)DS(0.004)ESSLHMSDR 151.03 1.38E-07 392195000 2358.04 1916.93 2965.12 2873.21 2424.68 2467.94 1951.62 2700.04 2492.87 2531.12 TRUE FALSE 2391.059835 2126.2269 2216.538784 2688.935171 2754.962466 2905.594507 2321.929707 2470.654749 2732.321302 2015.276355 1.186467469 1.055054755 1.099868402 1.334276147 1.367039543 1.441784647 1.152164417 1.22596325 1.355804774 1 10.97676197 -6.252750764 24.38363846 1.284085425 1.10792264 0.243082034 0.122445193 573.7016727 1610024.469 0.032869855 0.055746093 5.59E-07 6.252750764 -0.176162785 DLTQMADELRR ddPTM_K562_Paclitaxel_30min_R1 2 DLTQMADELRR 11 1 P41227;P41227-2;C9JN83 P41227 NAA10 N-alpha-acetyltransferase 10 0 ; 118.03 0.0087468 23678300 4887.3 4697.6 6161.2 6050.7 4911 5317.1 5378.9 5997.4 5463.6 6011.5 FALSE TRUE 4955.737279 5210.499854 4605.728859 5662.635184 5579.961344 6260.013029 6399.518195 5487.883435 5988.403192 4786.353 1.035389007 1.088615874 0.962262679 1.183079306 1.16580648 1.30788787 1.337034313 1.146568888 1.251141149 1 12.22471109 -6.405000056 4.803264818 1.217379226 1.035542935 0.404088172 0.093305951 0.21035698 7.375225485 0.02618362 0.039278909 3.94E-07 6.405000056 -0.181836291 DLVLEEKS(ph)K ddPTM_K562_Paclitaxel_30min_R1 2 DLVLEEKSK 9 1 A0A494C151;Q5CZ79-2;Q5VUR7;Q5TYW2;Q5SQ80;Q5CZ79 A0A494C151 ANKRD20A8P;ANKRD20A3;ANKRD20A1;ANKRD20A2 Ankyrin repeat domain-containing protein 20B;Ankyrin repeat domain-containing protein 20A3;Ankyrin repeat domain-containing protein 20A1;Ankyrin repeat domain-containing protein 20A2 1 DLVLEEKS(1)K;DLVLEEKS(1)K 84.615 0.015571 47561000 2303.6 2378.14 2277.04 2914.3 1895.08 2589.1 2375.06 2677.8 3484.3 2197.32 TRUE FALSE 2335.857507 2637.793368 1702.17309 2727.389842 2153.22198 3048.240532 2825.715236 2450.304176 3818.982583 1749.504978 1.335153393 1.507736989 0.972945554 1.558949461 1.230760705 1.742344589 1.615151298 1.400569994 2.182893236 1 10.77273105 -7.25743288 24.69620244 1.614912417 1.325348347 0.150756881 0.313682485 521.6311153 3215357.192 0.099038104 0.095532671 5.53E-08 7.25743288 -0.28956407 DLVLPTQALPAS(ph)PALK ddPTM_K562_Paclitaxel_30min_R1 2 DLVLPTQALPASPALK 16 0 J3KSZ6;U3KQ35;H3BR06;Q15554 J3KSZ6 TERF2 Telomeric repeat-binding factor 2 1 DLVLPT(0.035)QALPAS(0.965)PALK;DLVLPTQALPAS(1)PALK 106.75 0.001445 77072500 13410.5 10830.2 23900.4 15616.5 11993.5 9944.8 10340.6 14282.4 10307.2 17426.9 TRUE FALSE 13598.28837 12012.67786 17866.44842 14614.92759 13627.21775 11708.37065 12302.67487 13069.02097 11297.25261 13875.28821 0.980036462 0.865760601 1.287645211 1.053306235 0.982121419 0.843829005 0.886660852 0.941891856 0.814199492 1 13.76023012 -7.014530899 3.926298921 0.893511971 1.049388137 0.295806237 0.108632454 0.28843479 9.98753787 0.037187851 0.039743055 9.67E-08 7.014530899 0.155876166 DLVSFPLS(ph)PAVR ddPTM_K562_Paclitaxel_30min_R1 4 DLVSFPLSPAVR 12 0 J3QLB5;E9PI66;Q7KZJ0;J3QKK3;O43502-2;O43502 J3QLB5 RAD51C DNA repair protein RAD51 homolog 3 1 DLVSFPLS(1)PAVR;DLVS(0.003)FPLS(0.997)PAVR;DLVS(0.005)FPLS(0.995)PAVR;DLVSFPLS(1)PAVR 151.74 0.00059608 21793800 5376.29 4058.97 6007.69 5207.4 4028.01 4218.63 3905.65 5153.4 5020.75 6247.1 TRUE FALSE 5451.574647 4502.142071 4490.974357 4873.420671 4576.693157 4966.744798 4646.726699 4715.586503 5503.015471 4973.937591 1.096027955 0.905146474 0.902901228 0.979791279 0.920134817 0.998553904 0.934214918 0.948059041 1.106370028 1 12.28017269 -8.744037988 24.99691513 1.053185017 0.9565077 0.280482582 0.059022177 243.7219455 350107.1625 0.038056567 0.014307368 1.80E-09 8.744037988 -0.096677317 DMES(ph)PTKLDVTLAK ddPTM_K562_Paclitaxel_30min_R1 2 DMESPTKLDVTLAK 14 1 E7EVA0;P27816;P27816-2;P27816-6;P27816-5;H7C456 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 DMES(0.977)PT(0.023)KLDVTLAK;DMES(0.957)PT(0.043)KLDVTLAK 112.02 0.0087949 346324000 4592.2 2727.3 10217.2 4735.2 2900.27 2594.14 2771.72 4410.2 2832.73 6435.4 TRUE FALSE 4656.504968 3025.075837 7637.741495 4431.505466 3295.335876 3054.174305 3297.639401 4035.525982 3104.826373 5123.861948 0.90878814 0.590389801 1.49062203 0.864876047 0.64313518 0.596068812 0.643584748 0.787594596 0.605954338 1 12.32301589 -6.530795965 14.5577192 0.698356319 0.992928348 0.231453963 0.232555036 1.671250544 3066.739319 0.068023447 0.088791758 2.95E-07 6.530795965 0.29457203 DMGSVALDAGTAKDSLS(ph)PVLHPSDLILTR ddPTM_K562_Paclitaxel_30min_R1 2 DMGSVALDAGTAKDSLSPVLHPSDLILTR 29 1 Q9HCN4-3;Q9HCN4-2;Q9HCN4-4;Q9HCN4;Q9HCN4-5 Q9HCN4-3 GPN1 GPN-loop GTPase 1 1 DMGS(0.001)VALDAGT(0.071)AKDS(0.218)LS(0.71)PVLHPSDLILTR;DMGSVALDAGT(0.004)AKDS(0.208)LS(0.787)PVLHPS(0.001)DLILTR 88.433 1.48E-06 76877000 3866.9 2753.13 5749.2 3617.38 3075.23 2806.45 2524.23 4337.8 4755.1 5345.7 TRUE FALSE 3921.04853 3053.726044 4297.743355 3385.377438 3494.12839 3304.134503 3003.189465 3969.276814 5211.848601 4256.243406 0.92124631 0.717469786 1.00975037 0.795390939 0.820941863 0.776302995 0.705596269 0.932577495 1.224518455 1 12.05536494 -8.556898543 6.141926994 1.106612373 0.821128766 0.577656473 0.098890413 0.122680401 13.227071 0.064777296 0.024329264 2.77E-09 8.556898543 -0.285483607 DMMVMLPQS(ph)DACNPESK ddPTM_K562_Paclitaxel_30min_R1 1 DMMVMLPQSDACNPESK 17 0 Q6UWW0 Q6UWW0 LCN15 Lipocalin-15 1 DMMVMLPQS(1)DACNPESK 97.45 0.0018574 66531000 3822.9 3036.6 6007.4 3836.8 3306.1 2697.9 2940.1 3658.3 3296.9 4383.5 TRUE FALSE 3876.432395 3368.146257 4490.757571 3590.724821 3756.446793 3176.334685 3497.968627 3347.504581 3613.581976 3490.140294 1.110680966 0.965046094 1.286698297 1.028819623 1.07630252 0.910087967 1.002242985 0.959131811 1.035368688 1 11.76906931 -6.952190708 2.497605854 0.981067411 1.103946794 0.306208991 0.083008349 0.352719529 4.460615174 0.027930713 0.031392523 1.12E-07 6.952190708 0.122879384 DMPGGFLFEGLS(ph)DDEDDFHPNTR ddPTM_K562_Paclitaxel_30min_R1 10 DMPGGFLFEGLSDDEDDFHPNTR 23 0 H3BUV9;Q96S82 H3BUV9 UBL7 Ubiquitin-like protein 7 1 DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR;DMPGGFLFEGLS(1)DDEDDFHPNTR 171.16 1.77E-20 542361400 25820.11 24436.15 33337.23 27522.54 23963.21 22811.94 23053.08 27628.7 25461.01 32364.8 TRUE FALSE 26181.6712 27104.17149 24920.83398 25757.36747 27227.4049 26857.31726 27427.28158 25281.46948 27906.65377 25768.83599 1.016020716 1.051819783 0.967091955 0.999554946 1.056602049 1.042240219 1.064358576 0.98108698 1.082961364 1 14.65333975 -6.750634396 24.95609762 1.038471668 1.008740993 0.151465721 0.033901701 410.9597274 949185.7216 0.00982782 0.012559534 1.78E-07 6.750634396 -0.029730675 DMQPLS(ph)PISVHER ddPTM_K562_Paclitaxel_30min_R1 3 DMQPLSPISVHER 13 0 P28749;P28749-2 P28749 RBL1 Retinoblastoma-like protein 1 1 DMQPLS(1)PISVHER;DMQPLS(1)PISVHER;DMQPLS(1)PISVHER 127.49 0.00052751 274296000 5734.1 5718.46 8174.4 7016.9 5886.3 5420.4 5611.88 7233 5723.18 6914.3 TRUE FALSE 5814.395091 6342.820801 6110.67162 6566.86744 6688.113716 6381.631834 6676.704934 6618.511503 6272.917011 5505.161865 1.056171505 1.152158821 1.109989455 1.192856378 1.214880485 1.159208755 1.212808106 1.202237403 1.139460958 1 12.42656927 -4.506610519 1.009658477 1.169762647 0.708253943 0.15821 0.061862429 11.02961763 3.001448283 0.018394918 7.938870905 3.11E-05 4.506610519 -0.461508704 DMQPLSPIS(ph)VHER ddPTM_K562_Paclitaxel_30min_R1 1 DMQPLSPISVHER 13 0 P28749;P28749-2 P28749 RBL1 Retinoblastoma-like protein 1 1 DMQPLS(0.443)PIS(0.557)VHER 176.25 0.00015421 89328000 1376.2 1342.3 1539.9 1398.9 1177.3 1188.1 1354.9 1433.3 1162.3 1451 TRUE FALSE 1395.471046 1488.856853 1151.1332 1309.180815 1337.668192 1398.792853 1611.985202 1311.532219 1273.944108 1155.285404 1.207901564 1.288735103 0.996405906 1.133209864 1.157868166 1.210776877 1.395313398 1.135245208 1.10270943 1 10.17403359 -8.938895117 2.386519559 1.004667333 1.193003597 0.277852085 0.098267416 0.383487133 4.818644472 0.099677315 0.027446869 1.15E-09 8.938895117 0.188336264 DMQPS(ph)MES(ph)DMALVK ddPTM_K562_Paclitaxel_30min_R1 1 DMQPSMESDMALVK 14 0 E7EVA0;P27816;P27816-2;P27816-6;P27816-5;H7C456 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 2 DMQPS(1)MES(1)DMALVK 89.624 0.024948 18015000 1667.9 1714 1747.9 1876 1772.7 1680.8 1804.8 1860.4 1484.8 1900.9 TRUE FALSE 1691.255746 1901.140316 1306.621027 1755.681757 2014.171752 1978.86628 2147.251378 1702.347408 1627.421674 1513.495537 1.117450105 1.256125486 0.863313433 1.160017796 1.330807857 1.307480751 1.418736512 1.124778611 1.075273521 1 10.56366871 -4.965984398 15.64122001 1.182009553 0.897664693 0.005619384 0.157880675 30640341.75 404320471.4 0.041613697 235578261.9 1.08E-05 4.965984398 -0.28434486 DMSPLSETEMALGKDVT(ph)PPPETEVVLIK ddPTM_K562_Paclitaxel_30min_R1 1 DMSPLSETEMALGKDVTPPPETEVVLIK 28 1 E7EVA0;P27816;P27816-2;P27816-6 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 DMS(0.001)PLS(0.005)ET(0.005)EMALGKDVT(0.986)PPPET(0.004)EVVLIK 56.947 0.020562 8305000 998.09 1011.1 2741.9 1321.5 1062.7 727.08 712.14 1401.8 1119.7 1777.3 TRUE FALSE 1012.066339 1121.495317 2049.673434 1236.744905 1207.457732 856.0174293 847.2648474 1282.70834 1227.252188 1415.085284 0.715198123 0.792528429 1.448445162 0.873971992 0.85327559 0.604922854 0.598737657 0.906453028 0.867263762 1 10.46667329 -6.689719246 3.650471205 0.777937047 0.98997297 0.107085612 0.216882395 0.453743102 11.98650854 0.070003512 0.090283222 2.04E-07 6.689719246 0.212035923 DMT(ph)IPR ddPTM_K562_Paclitaxel_30min_R1 1 DMTIPR 6 0 H0YAU1;G3V144;A0A1B0GUF2;A1X283 H0YAU1 SH3PXD2B SH3 and PX domain-containing protein 2B 1 DMT(1)IPR 53.466 0.024911 4818600 166.12 150.76 241.41 207.01 224.4 276.44 220.04 0 471.36 146.81 TRUE FALSE 168.4461925 167.2204866 180.4630598 193.7333051 254.9670791 325.4627526 261.7914413 0 516.6362341 116.8900414 1.441065385 1.430579411 1.54387027 1.657397866 2.181255786 2.784349707 2.239638537 0 4.419848157 1 6.869008213 -6.619181501 3.897696322 2.093591159 1.483345566 0.068398646 1.072787587 0.697148975 20.04503371 0.31246228 0.413328271 2.40E-07 6.619181501 -0.610245593 DNDFIYHDR ddPTM_K562_Paclitaxel_30min_R1 1 DNDFIYHDR 9 0 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 110.38 0.012654 10530000 9130.5 8582.3 12894 10438 8414.2 8140.3 8243.4 10167 6553.3 12535 FALSE TRUE 9258.35517 9519.344537 9638.750229 9768.553399 9560.356494 9583.86791 9807.542117 9303.24989 7182.773746 9980.360119 0.927657425 0.953807721 0.965771787 0.978777647 0.957916987 0.960272755 0.982684192 0.932155732 0.719690839 1 13.28487616 -8.541286125 24.99307657 0.84853798 0.961144743 0.274257228 0.064439908 256.1011251 347720.8311 0.039065019 0.0147706 2.88E-09 8.541286125 0.112606763 DNEESEQPPVPGT(ph)PTLR ddPTM_K562_Paclitaxel_30min_R1 3 DNEESEQPPVPGTPTLR 17 0 A0A2R8YDC1;A0A2R8Y6V8;O15439-4;O15439-3;O15439-2;O15439 A0A2R8YDC1 ABCC4 Multidrug resistance-associated protein 4 1 DNEESEQPPVPGT(1)PTLR;DNEESEQPPVPGT(0.999)PT(0.001)LR;DNEESEQPPVPGT(0.803)PT(0.197)LR 180.03 6.66E-10 47310000 3741.6 2806.44 4889.1 3308.41 2671.17 2796.45 2919.41 3978.2 4015.7 4479.5 TRUE FALSE 3793.993944 3112.85661 3654.786237 3096.22339 3035.028577 3292.361143 3473.352807 3640.227079 4401.425928 3566.575441 1.063763828 0.872785859 1.024732632 0.86812222 0.850964357 0.92311552 0.973862144 1.02065052 1.234076217 1 11.80032377 -8.395598077 2.78555524 1.118008253 0.931952751 0.406266534 0.084217324 0.250286587 3.655966041 0.056559936 0.022227836 4.02E-09 8.395598077 -0.186055502 DNFWEMGDTGPCGPCSEIHYDR ddPTM_K562_Paclitaxel_30min_R1 1 DNFWEMGDTGPCGPCSEIHYDR 22 0 P49588;P49588-2 P49588 AARS "Alanine--tRNA ligase, cytoplasmic" 0 120.33 9.22E-06 15104000 451.89 343.78 707.75 506.63 429.44 397.65 490.83 676.85 347.42 588.83 FALSE TRUE 458.2178542 381.315063 529.0697592 474.1370194 487.9369985 468.1676442 583.9624302 619.3473677 380.7912433 468.8261228 0.977372702 0.813340052 1.12849889 1.011328073 1.040763248 0.998595474 1.245584241 1.321059851 0.812222751 1 8.872909148 -5.768107362 24.99961574 1.081838884 0.895356365 0.197783347 0.138797941 207.0689228 776353.6424 0.036307119 0.078424723 1.71E-06 5.768107362 -0.186482519 DNLTLWTSENQGDEGDAGEGEN ddPTM_K562_Paclitaxel_30min_R1 3 DNLTLWTSENQGDEGDAGEGEN 22 0 P31946-2;P31946 P31946-2 YWHAB "14-3-3 protein beta/alpha;14-3-3 protein beta/alpha, N-terminally processed" 0 ;; 143.93 1.44E-24 6556400 3537.43 3584.38 4312.3 3978.61 3172.21 3423.89 3067.04 4013.16 3197.26 4220.52 FALSE TRUE 3586.964934 3975.73473 3223.606531 3723.439762 3604.318708 4031.068818 3648.994829 3672.217009 3504.371109 3360.375707 1.06742973 1.18312209 0.959299439 1.108042697 1.072593966 1.199588727 1.085888944 1.092799534 1.042850983 1 11.71440683 -8.940259341 2.360671568 1.000329315 1.09785064 0.202716506 0.062163649 0.438259659 5.401840743 0.05836338 0.016089766 1.15E-09 8.940259341 0.097521325 DNQESS(ph)DAELSSSEYIK ddPTM_K562_Paclitaxel_30min_R1 2 DNQESSDAELSSSEYIK 17 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 DNQES(0.06)S(0.94)DAELSSSEYIK;DNQES(0.031)S(0.966)DAELS(0.002)SSEYIK 151.41 9.89E-08 6355300 1333.15 1042.59 2931.9 1941.66 1438.85 1047.18 954.71 1494.05 1214.84 2087.48 TRUE FALSE 1351.818213 1156.423502 2191.705584 1817.130618 1634.84573 1232.88267 1135.861239 1367.121127 1331.53081 1662.05043 0.81334368 0.695781236 1.318675742 1.093306548 0.983631844 0.741784153 0.683409611 0.82255093 0.80113743 1 10.69874844 -7.25039609 22.47634496 0.790787942 0.990110096 0.193867519 0.171854553 299.9383806 610461.6432 0.060751827 0.060052519 5.62E-08 7.25039609 0.199322154 DNTFFRES(ph)PVGR ddPTM_K562_Paclitaxel_30min_R1 1 DNTFFRESPVGR 12 1 F8WF16;B7Z8L1;F8W6A0;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-9;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8;F8VPY7;F8VWU8 F8WF16;F8VWU8 PPHLN1 Periphilin-1 1 DNTFFRES(1)PVGR 135.91 0.00096344 844000000 3523.7 3284.6 4239 3829.4 3115.6 3252.7 2818 3938.2 3132.1 3959.2 TRUE FALSE 3573.042672 3643.223736 3168.812023 3583.799424 3539.997468 3829.520675 3352.700789 3603.625329 3432.9522 3152.312867 1.13346702 1.155730376 1.005233984 1.136879357 1.122984176 1.214828869 1.063568539 1.143168677 1.089026485 1 11.62219501 -9.083791341 5.323137843 1.000006898 1.120750896 0.32905765 0.052557751 0.697521114 42.25254848 0.050238114 0.013070565 8.25E-10 9.083791341 0.120743998 DNTRPGANS(ph)PEMWSEAIK ddPTM_K562_Paclitaxel_30min_R1 1 DNTRPGANSPEMWSEAIK 18 1 F1T0B3;A0A087X2G1;Q92499-3;Q92499-2;Q92499 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 1 DNTRPGANS(1)PEMWSEAIK 95.195 0.0045618 10046000 803.07 615.42 1404.5 1035.5 655.44 531.64 456.17 956.14 877.05 886.42 TRUE FALSE 814.3154577 682.6136368 1049.916604 969.0876647 744.7220247 625.9188894 542.7258761 874.909939 961.2945713 705.7671174 1.153801924 0.96719388 1.487624711 1.37309835 1.055195129 0.886863207 0.768987195 1.239658121 1.362056332 1 9.463048405 -6.857424967 8.779053333 1.040571143 1.242518619 0.180900508 0.200722972 0.516171832 42.3414839 0.068552596 0.07784481 1.39E-07 6.857424967 0.201947477 DPAQPMS(ph)PGEATQSGAR ddPTM_K562_Paclitaxel_30min_R1 1 DPAQPMSPGEATQSGAR 17 0 Q9BQG0;Q9BQG0-2 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 DPAQPMS(0.925)PGEAT(0.075)QSGAR 91.307 0.0057694 32212000 1407.8 1284.9 2090.3 1642.1 1140.6 1024.7 1248.4 1581.2 1206.5 1652.5 TRUE FALSE 1427.513543 1425.189727 1562.577912 1536.783056 1295.969031 1206.416157 1485.277383 1446.86719 1322.389716 1315.719593 1.084967915 1.083201721 1.187622287 1.168017155 0.984988775 0.916924977 1.128870765 1.099677468 1.005069563 1 10.36163634 -6.759369804 24.99998721 1.02760339 1.131589379 0.413440599 0.063060927 63.70978604 769593.2998 0.020832038 0.025566847 1.74E-07 6.759369804 0.103985989 DPAQPMS(ph)PGEATQSGARPADR ddPTM_K562_Paclitaxel_30min_R1 1 DPAQPMSPGEATQSGARPADR 21 1 Q9BQG0;Q9BQG0-2 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 DPAQPMS(0.999)PGEATQSGARPADR 67.418 0.026766 60289000 1733.3 2105.1 3051.2 2335.7 1968.3 1742.8 1878.5 2797.3 1163.2 2331.8 TRUE FALSE 1757.571548 2334.941937 2280.886823 2185.898656 2236.415784 2051.86111 2234.935569 2559.651905 1274.930557 1856.57788 0.946672675 1.257659031 1.228543574 1.177380534 1.204590342 1.105184507 1.203793061 1.378693527 0.686709979 1 10.85843012 -8.764717109 24.99999996 0.843354982 1.189490094 0.546226299 0.125575738 61.72022873 470716.5789 0.099560975 0.029857313 1.72E-09 8.764717109 0.346135112 DPAQPMSPGEATQS(ph)GARPADR ddPTM_K562_Paclitaxel_30min_R1 1 DPAQPMSPGEATQSGARPADR 21 1 Q9BQG0;Q9BQG0-2 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 DPAQPMS(0.01)PGEAT(0.363)QS(0.627)GARPADR 114.53 8.96E-05 39874000 754.69 871.23 938.56 682.05 905.54 742.21 745.89 993.77 415.65 834.95 TRUE FALSE 765.2579884 966.3538377 701.60892 638.3063657 1028.889879 873.8305224 887.4187337 909.3430356 455.5750397 664.7867317 1.151133066 1.453629851 1.055389475 0.960167126 1.547699179 1.314452411 1.334892367 1.367871818 0.685295025 1 9.376747778 -8.756284261 24.99949662 0.842647461 1.274064566 0.471609434 0.182272594 100.9895904 489762.4409 0.133527039 0.047047297 1.75E-09 8.756284261 0.431417106 DPGGRD ddPTM_K562_Paclitaxel_30min_R1 1 DPGGRD 6 1 K7EKK2 K7EKK2 BECN1 0 7.4132 0.029736 1337800 910.04 773.33 865.4 669.32 700.18 860.78 716.6 724.57 834.23 1101.3 FALSE TRUE 922.7833677 857.7647846 646.9190669 626.392811 795.5563701 1013.427247 852.5711091 663.0132559 914.3615189 876.8544555 1.052379174 0.978229373 0.737772458 0.714363492 0.907284402 1.155753091 0.972306298 0.756126917 1.04277456 1 9.776193587 -7.007199544 24.85891966 0.976241851 0.861617704 0.144435616 0.131411977 695.0477573 2399903.223 0.045095159 0.049150161 9.84E-08 7.007199544 -0.114624147 DQDS(ph)SDDERALEDWVSSETSALPRPR ddPTM_K562_Paclitaxel_30min_R1 1 DQDSSDDERALEDWVSSETSALPRPR 26 2 Q5TAQ8;V9GY54;Q5TAQ9-2;Q5TAQ9 Q5TAQ8 DCAF8 DDB1- and CUL4-associated factor 8 1 DQDS(0.5)S(0.5)DDERALEDWVSSETSALPRPR 61.16 0.0022885 9488700 775.58 643.62 1111.3 758.92 640.14 689.56 888.25 969.38 662.84 1046.9 TRUE FALSE 786.4405129 713.8926082 830.7385706 710.246268 727.3379057 811.8437841 1056.790801 887.0251183 726.5087436 833.5412053 0.943493264 0.85645749 0.996637677 0.852082973 0.872587823 0.973969588 1.267832704 1.06416469 0.871593077 1 9.703109709 -7.527988732 24.99551845 1.065481314 0.905775646 0.321831478 0.09946025 159.8565764 781927.463 0.038443049 0.029881684 2.96E-08 7.527988732 -0.159705669 DQEPDVHYDFEPHVSANAWS(ph)PVMR ddPTM_K562_Paclitaxel_30min_R1 2 DQEPDVHYDFEPHVSANAWSPVMR 24 0 K7ES92;F5H1R4;K7ES98;K7EM85;Q92619;Q92619-2 K7ES92 HMHA1 Minor histocompatibility protein HA-1;Minor histocompatibility antigen HA-1 1 DQEPDVHYDFEPHVS(0.015)ANAWS(0.985)PVMR;DQEPDVHY(0.009)DFEPHVS(0.051)ANAWS(0.94)PVMR 91.592 0.00011568 66734000 3434.4 3155.8 4501.3 3841.9 3143.2 2812.1 3460.4 3542.3 3699.9 4752.4 TRUE FALSE 3482.492196 3500.360916 3364.891144 3595.49773 3571.357055 3310.786451 4116.992836 3241.359505 4055.291927 3783.858271 0.920354819 0.925077174 0.889275153 0.95021998 0.94384007 0.874976337 1.088040973 0.856628148 1.071734625 1 11.88564234 -7.873225537 0.674407178 1.006125121 0.914521326 0.208768438 0.066509314 1.225624846 1.096268762 0.055499304 0.034592357 1.34E-08 7.873225537 -0.091603795 DQHLNNSSS(ph)SPQR ddPTM_K562_Paclitaxel_30min_R1 1 DQHLNNSSSSPQR 13 0 A0A5H1ZRS1;A0A4W8VX11;E9PGW9;E7EV93 A0A5H1ZRS1 PCM1 1 DQHLNNS(0.019)S(0.063)S(0.459)S(0.459)PQR 128.85 0.0005719 738960 207.48 269.2 260.68 266.42 190.88 306.42 237.01 277.03 136.19 173.3 TRUE FALSE 210.3853601 298.5921664 194.86811 249.3330137 216.8810876 360.7592846 281.9814102 253.4945723 149.271658 137.9813649 1.524737491 2.164003571 1.412278463 1.807004981 1.571814338 2.614550776 2.043619517 1.837165276 1.081824768 1 7.108329626 DQHLNNSSSS(ph)PQR ddPTM_K562_Paclitaxel_30min_R1 1 DQHLNNSSSSPQR 13 0 A0A5H1ZRS1;A0A4W8VX11;E9PGW9;E7EV93 A0A5H1ZRS1 PCM1 1 DQHLNNS(0.028)S(0.101)S(0.101)S(0.77)PQR 130.95 0.00037601 722830 378.32 324.79 401.73 262.84 333.02 296.85 225.26 410.2 313.59 312.73 TRUE FALSE 383.6176472 360.2516706 300.308293 245.9826188 378.3829621 349.4921795 268.0019091 375.3509496 343.7117207 248.9954543 1.540661247 1.44682027 1.206079419 0.987900038 1.519638031 1.403608674 1.076332537 1.507461052 1.380393556 1 7.959975594 -11.43040987 2.798429232 0.991503818 1.333956606 0.240241723 0.181530188 14812615.12 16390448.65 994607.294 0.048434584 3.71E-12 11.43040987 0.342452788 DQLEMYHMNQSTAMRQMVFMQK ddPTM_K562_Paclitaxel_30min_R1 1 DQLEMYHMNQSTAMRQMVFMQK 22 1 F8W1C8;Q8WXB4 F8W1C8 ZNF606 Zinc finger protein 606 0 45.696 0.019663 13112000 0 0 0 0 0 0 0 56.483 0 0 FALSE TRUE 0 0 0 0 0 0 0 51.68441659 0 0 0 DQLPPHPRS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 DQLPPHPRSR 10 1 A0A5E8;Q99501 A0A5E8 GAS2L1 GAS2-like protein 1 1 DQLPPHPRS(1)R 77.185 0.029453 12646000 1034.6 871.88 1216.9 1001.1 802.15 1101.1 902.41 1155.4 1066 1284.5 TRUE FALSE 1049.087592 967.0748069 909.6785446 936.8939268 911.4164105 1296.364625 1073.637587 1057.241558 1168.394063 1022.718195 1.025783639 0.945592649 0.889471361 0.916082193 0.891170623 1.267567773 1.049788292 1.033756477 1.142439891 1 9.998192957 -7.225156484 24.99994582 1.097762716 0.930858178 0.533595141 0.077149194 464.9738997 320380.4809 0.025209029 0.025208265 5.95E-08 7.225156484 -0.166904538 DQLSSRS(ph)ELNTVR ddPTM_K562_Paclitaxel_30min_R1 1 DQLSSRSELNTVR 13 1 Q969H9 Q969H9 DIRC1 Disrupted in renal carcinoma protein 1 1 DQLSS(0.003)RS(0.922)ELNT(0.075)VR 80.17 0.02263 27416000 2641.6 2717.6 3394.4 3134.9 2394.2 2473.3 3069.6 3796.6 1722.1 4244.5 TRUE FALSE 2678.59055 3014.316758 2537.441739 2933.841545 2720.330574 2911.905028 3652.040576 3474.055132 1887.5154 3379.46857 0.792607031 0.891949931 0.750840461 0.868136952 0.804958093 0.861645838 1.080655286 1.027988591 0.558524324 1 11.72258068 -7.532948683 24.83245116 0.92655673 0.825150413 0.094589459 0.137177018 468.0909171 1154298.482 0.051722367 0.040109738 2.93E-08 7.532948683 -0.101406317 DQMEGS(ph)PNSSESFEHIAR ddPTM_K562_Paclitaxel_30min_R1 1 DQMEGSPNSSESFEHIAR 18 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 DQMEGS(0.996)PNS(0.003)S(0.001)ESFEHIAR 138 5.38E-10 24818000 2406.7 1974.4 3381.4 2635.7 2338.1 2127.5 1711.1 2800.4 2143.9 2806.6 TRUE FALSE 2440.401225 2189.971669 2527.723749 2466.657999 2656.588804 2504.782253 2035.772292 2562.48854 2349.831174 2234.613379 1.092091029 0.980022625 1.131168269 1.103841059 1.188835988 1.120901842 0.911017678 1.146725677 1.051560505 1 11.12580953 DQMEGSPNS(ph)SESFEHIAR ddPTM_K562_Paclitaxel_30min_R1 1 DQMEGSPNSSESFEHIAR 18 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 DQMEGS(0.235)PNS(0.629)S(0.134)ES(0.002)FEHIAR 106.75 0.00088813 13804000 1325.9 1209.6 1694.5 1505.3 1362.1 1209.7 1127.4 1161.9 1298.9 1489.1 TRUE FALSE 1344.466691 1341.668219 1266.702518 1408.756795 1547.641081 1424.22331 1341.318265 1063.189343 1423.665149 1185.620603 1.133977166 1.131616822 1.068387741 1.18820202 1.3053426 1.201247099 1.131321657 0.896736562 1.200776324 1 10.21142671 -8.016349741 24.12039313 1.032059666 1.17135161 0.324356049 0.089729593 547.5780926 807826.3118 0.041625555 0.024907732 9.63E-09 8.016349741 0.139291944 DQPAFTPSGILTPHALGS(ph)RNSPGSQVASNPR ddPTM_K562_Paclitaxel_30min_R1 2 DQPAFTPSGILTPHALGSRNSPGSQVASNPR 31 1 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 1 DQPAFTPSGILTPHALGS(0.474)RNS(0.474)PGS(0.007)QVAS(0.044)NPR;DQPAFTPSGILT(0.009)PHALGS(0.53)RNS(0.38)PGS(0.018)QVAS(0.063)NPR 128.18 5.00E-21 117395000 1264.32 1085.58 1610.37 1409.59 1202.22 964.57 1424.32 1531.84 1690.12 1462.86 TRUE FALSE 1282.024381 1204.107296 1203.812177 1319.185206 1365.982718 1135.622946 1694.577285 1401.700631 1852.463578 1164.728329 1.10070679 1.033809572 1.033556192 1.132611935 1.172790842 0.975011012 1.454912053 1.203457146 1.590468379 1 10.18577777 -7.75829534 24.99997923 1.329164161 1.07810125 0.363078408 0.153383834 81.27127432 646239.1618 0.05594031 0.041456146 1.74E-08 7.75829534 -0.251062911 DQPSPCLS(ph)SAEDSGVDEGQGSPSEMVHSSEFR ddPTM_K562_Paclitaxel_30min_R1 1 DQPSPCLSSAEDSGVDEGQGSPSEMVHSSEFR 32 0 A0A2R8Y575;Q5VVD7;Q8IWE5 A0A2R8Y575 PLEKHM2 Pleckstrin homology domain-containing family M member 2 1 DQPS(0.016)PCLS(0.328)S(0.328)AEDS(0.328)GVDEGQGSPSEMVHSSEFR 78.757 1.29E-05 12387000 569.19 348.28 503.8 616.05 527.89 627.6 483.21 547.6 564.14 649.91 TRUE FALSE 577.1604161 386.3063882 376.6094591 576.5393103 599.7975553 738.8960481 574.896575 501.077962 618.3281676 517.4579853 1.115376383 0.746546385 0.727806836 1.114176081 1.159123199 1.427934381 1.111001456 0.968345211 1.194934053 1 9.015297918 -6.364826548 6.024588389 1.152491493 0.852861016 0.406365887 0.152643116 0.221704145 10.83539046 0.044768489 0.066876703 4.32E-07 6.364826548 -0.299630478 DQQNLPYGVTPAS(ph)PSGHSQGR ddPTM_K562_Paclitaxel_30min_R1 2 DQQNLPYGVTPASPSGHSQGR 21 0 Q7KZI7-10;Q7KZI7-13;Q7KZI7-7;Q7KZI7-2;Q7KZI7-15;Q7KZI7-5;Q7KZI7-4;Q7KZI7-16;Q7KZI7-9;Q7KZI7;Q7KZI7-11;E9PC69;E7ETY4;Q7KZI7-8;Q7KZI7-14;Q7KZI7-6;Q7KZI7-3;Q7KZI7-12 Q7KZI7-10 MARK2 Serine/threonine-protein kinase MARK2 1 DQQNLPYGVT(0.001)PAS(0.985)PS(0.013)GHSQGR;DQQNLPYGVT(0.007)PAS(0.991)PS(0.002)GHSQGR 193.36 7.49E-24 67348000 4450 4261 5645.9 4750.4 4140.1 4198 3372.8 4846.4 3519.6 4865.5 TRUE FALSE 4512.313729 4726.23039 4220.522717 4445.730606 4704.051712 4942.456357 4012.771193 4434.66807 3857.673306 3873.908429 1.164796177 1.220016032 1.089474053 1.147608594 1.21429089 1.275832005 1.035845649 1.144752942 0.99580911 1 11.91957414 -8.492985173 1.260448332 0.996199412 1.176420988 0.518595537 0.063444771 0.379734452 1.074978131 0.058108768 0.019996014 3.21E-09 8.492985173 0.180221576 DQQNLPYGVTPAS(ph)PSGHSQGRR ddPTM_K562_Paclitaxel_30min_R1 1 DQQNLPYGVTPASPSGHSQGRR 22 1 Q7KZI7-10;Q7KZI7-13;Q7KZI7-7;Q7KZI7-2;Q7KZI7-15;Q7KZI7-5;Q7KZI7-4;Q7KZI7-16;Q7KZI7-9;Q7KZI7;Q7KZI7-11;E9PC69;E7ETY4;Q7KZI7-8;Q7KZI7-14;Q7KZI7-6;Q7KZI7-3;Q7KZI7-12 Q7KZI7-10 MARK2 Serine/threonine-protein kinase MARK2 1 DQQNLPY(0.001)GVT(0.009)PAS(0.775)PS(0.054)GHS(0.161)QGRR 50.986 0.018996 24532000 2157.2 1604.9 2465.9 2000.9 2140.1 2039.5 1505.5 2119.5 1935.2 2287 TRUE FALSE 2187.407456 1780.128409 1843.353047 1872.57123 2431.617852 2401.176689 1791.160766 1939.435245 2121.084607 1820.908145 1.201272817 0.977604727 1.012326213 1.028372153 1.335387433 1.31866986 0.983663438 1.065092301 1.164849865 1 10.83044243 -4.922285809 19.1103874 1.105302508 4.134193323 0.053655371 0.126641906 893.0842903 226351.8201 0.032990604 3535.349047 1.20E-05 4.922285809 3.028890815 DQQNLPYGVTPASPS(ph)GHSQGRR ddPTM_K562_Paclitaxel_30min_R1 1 DQQNLPYGVTPASPSGHSQGRR 22 1 Q7KZI7-10;Q7KZI7-13;Q7KZI7-7;Q7KZI7-2;Q7KZI7-15;Q7KZI7-5;Q7KZI7-4;Q7KZI7-16;Q7KZI7-9;Q7KZI7;Q7KZI7-11;E9PC69;E7ETY4;Q7KZI7-8;Q7KZI7-14;Q7KZI7-6;Q7KZI7-3;Q7KZI7-12 Q7KZI7-10 MARK2 Serine/threonine-protein kinase MARK2 1 DQQNLPYGVTPAS(0.191)PS(0.737)GHS(0.072)QGRR 82.139 0.00075129 26133000 1216 1040.5 1289.7 1335.8 990.45 1185.1 773.54 1147.8 1199 984.15 TRUE FALSE 1233.027752 1154.105309 964.0992842 1250.127767 1125.366058 1395.260845 920.3151769 1050.287226 1314.169307 783.5796898 1.573583093 1.472862714 1.230378093 1.595406036 1.436185844 1.780624056 1.174501061 1.34037066 1.67713549 1 9.613936194 -11.51288192 2.909164554 0.98215438 1.466866754 0.381544267 0.181369909 26798641.68 30379244.13 3815816.952 0.045121116 3.07E-12 11.51288192 0.484712374 DQRKPRMS(ph)S(ph)DAK ddPTM_K562_Paclitaxel_30min_R1 1 DQRKPRMSSDAK 12 3 H3BPE1;H3BQK9;Q9UPN3;Q9UPN3-5 H3BPE1 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 2 DQRKPRMS(1)S(1)DAK 62.338 0.023425 0 753.08 591.54 738.58 699.32 559.4 531.41 511.18 696.38 484.52 800.54 TRUE FALSE 763.6254435 656.1263377 552.1163444 654.4687452 635.5997507 625.6481021 608.1737365 637.2181723 531.0603109 637.3895086 1.198051479 1.029396199 0.866214986 1.026795604 0.99719205 0.981578915 0.954163393 0.999731191 0.833180188 1 9.316031462 -5.33900487 3.411886117 0.961359512 1.210717569 0.598966366 0.05930127 0.169807326 3.260035271 0.014524275 0.095793095 4.58E-06 5.33900487 0.249358057 DQS(ph)PFSK ddPTM_K562_Paclitaxel_30min_R1 1 DQSPFSK 7 0 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 DQS(0.913)PFS(0.087)K 112.3 0.0043635 60436000 4130 3476 7789.3 4929.1 3358.8 2870.8 2685.2 4437.9 2449.7 6044.4 TRUE FALSE 4187.832742 3855.521435 5822.794878 4612.969588 3816.325425 3379.896072 3194.702682 4060.872694 2685.004631 4812.547962 0.870190339 0.801139327 1.209919345 0.958529582 0.792994783 0.702309068 0.663827708 0.843809293 0.55791748 1 12.2325852 -6.830577346 3.997465939 0.739611164 0.96746212 0.30800384 0.146630153 0.254861538 8.010775847 0.045912403 0.053932137 1.48E-07 6.830577346 0.227850957 DQSPFS(ph)K ddPTM_K562_Paclitaxel_30min_R1 2 DQSPFSK 7 0 E9PG73;Q13427 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 DQS(0.072)PFS(0.928)K;DQS(0.207)PFS(0.793)K 117.31 0.002926 190953000 9733 8129.5 17844.4 10097.4 8578.8 6615.9 6982.2 10309.3 5745 12644.2 TRUE FALSE 9869.292029 9017.106302 13339.36052 9449.797958 9747.3778 7789.136973 8307.036 9433.460616 6296.832919 10067.3051 0.980331075 0.895682232 1.325018005 0.938662121 0.968221158 0.77370626 0.82514992 0.937039309 0.625473536 1 13.29738992 -6.921572153 2.240388878 0.82955113 1.050950848 0.314134654 0.142073715 0.362616696 3.701393541 0.048819024 0.056206046 1.20E-07 6.921572153 0.221399717 DQST(ph)PIIEVEGPLLSDTHVTFK ddPTM_K562_Paclitaxel_30min_R1 1 DQSTPIIEVEGPLLSDTHVTFK 22 0 P49116;P49116-2 P49116 NR2C2 Nuclear receptor subfamily 2 group C member 2 1 DQS(0.258)T(0.742)PIIEVEGPLLSDTHVTFK 140.81 1.69E-16 8074500 2179.1 2037.6 3532.8 2251.8 1831.6 1528.5 1530.4 2481.9 2134.9 3436 TRUE FALSE 2209.614123 2260.072059 2640.900947 2107.379627 2081.094929 1799.558014 1820.785411 2271.047103 2339.966684 2735.741314 0.807683867 0.826127839 0.965332845 0.770313924 0.760706036 0.657795386 0.665554671 0.830139565 0.855331852 1 11.4177161 -4.777902338 16.46787431 0.802281136 25.38001849 0 0.10590486 9744.618242 723118.1476 0.026707518 7284.993436 1.67E-05 4.777902338 24.57773735 DQVLHEHIQR ddPTM_K562_Paclitaxel_30min_R1 1 DQVLHEHIQR 10 0 Q14C86-4;Q14C86-2;Q14C86-6;F8W9S7;Q14C86-3;Q14C86-5;Q14C86 Q14C86-4 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 0 154.84 0.00014555 3226400 2596.8 2552.8 3547.6 2948 2506.5 2128.2 2468.5 2945.9 1615.1 3509.7 FALSE TRUE 2633.163212 2831.523337 2651.964504 2758.928475 2847.927735 2505.606389 2936.884989 2695.627407 1770.237571 2794.421213 0.94229288 1.013277212 0.949021032 0.987298716 1.019147622 0.896645923 1.050981496 0.964646058 0.633489884 1 11.44833378 -8.562233927 24.99845727 0.810852112 0.980607681 0.330889758 0.091814743 155.1176459 98528.3023 0.055553949 0.020997481 2.74E-09 8.562233927 0.169755569 DRCPLPCIPTLIGT(ph)PVK ddPTM_K562_Paclitaxel_30min_R1 1 DRCPLPCIPTLIGTPVK 17 1 Q9H0H5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 DRCPLPCIPTLIGT(1)PVK 92.563 0.028486 5612200 1080.1 972.61 2050.8 1217.6 1196.8 929.23 1001.4 1498.4 890.75 2389.4 TRUE FALSE 1095.224732 1078.802849 1533.050176 1139.508586 1359.824422 1094.015893 1191.410422 1371.101567 976.3105175 1902.438968 0.575695069 0.567063053 0.805834091 0.598972479 0.714779525 0.575059653 0.626254215 0.720707255 0.513188877 1 10.89363446 -12.27509719 2.416091573 2.671367289 0.638274497 0.62994062 0.084287201 3145542.111 697946.4381 28687270.49 0.02006687 5.31E-13 12.27509719 -2.033092792 DRDRDLYPDSDWVPPPPPVR ddPTM_K562_Paclitaxel_30min_R1 1 DRDRDLYPDSDWVPPPPPVR 20 2 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 0 65.231 0.011936 9748000 1494.1 1605.6 1892.3 1654.7 1243.5 1348.7 1414 1444.8 1388.9 1971.7 FALSE TRUE 1515.02201 1780.904838 1414.565461 1548.574948 1412.885753 1587.873008 1682.299118 1322.055222 1522.310051 1569.866458 0.965064259 1.134430785 0.901073753 0.986437375 0.900003784 1.011470116 1.071619252 0.842145022 0.969706718 1 10.61642612 -5.771922145 24.99999136 0.959251564 1.049747546 0.19496429 0.072672916 286.492055 683249.4764 0.018558025 0.039276007 1.69E-06 5.771922145 0.090495982 DRDYFDYSR ddPTM_K562_Paclitaxel_30min_R1 1 DRDYFDYSR 9 1 Q9HCG8;B7WP74 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 0 152.06 0.0010218 29850000 1887.4 1786 2692.8 2082.7 1840 1810.9 2015.5 2367.1 1546.2 2812.1 FALSE TRUE 1913.829423 1981.00152 2012.969336 1949.124944 2090.639151 2132.037689 2397.930603 2166.00008 1694.719419 2238.992476 0.854772601 0.884773638 0.899051407 0.870536621 0.933741035 0.952230841 1.07098645 0.967399445 0.756911618 1 11.12863397 -6.886779867 3.662843907 0.95421103 0.879256532 0.172044961 0.074835541 0.439427322 11.29854258 0.024963579 0.02879754 1.30E-07 6.886779867 -0.074954498 DRDYS(ph)DHPSGGSYR ddPTM_K562_Paclitaxel_30min_R1 1 DRDYSDHPSGGSYR 14 1 P38159;P38159-2;H3BUY5;H0Y6E7;H3BT71;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 DRDY(0.003)S(0.997)DHPSGGSYR 65.949 0.028635 0 444.36 533.88 573.26 539.12 387.13 325.58 490.15 641.87 399.68 583.88 TRUE FALSE 450.582411 592.1708239 428.533423 504.5432562 439.8636602 383.3170416 583.1534037 587.3391371 438.0710498 464.8849355 0.96923427 1.273800845 0.921805355 1.085307821 0.946177487 0.824541757 1.254403744 1.263407549 0.942321457 1 8.860729866 -7.784197957 24.99993502 1.136983723 1.01316778 0.115373485 0.144881681 495.5913415 544393.8413 0.061064085 0.041201605 1.64E-08 7.784197957 -0.123815943 DRDYSDHPS(ph)GGSYR ddPTM_K562_Paclitaxel_30min_R1 2 DRDYSDHPSGGSYR 14 1 P38159;P38159-2;H3BUY5;H0Y6E7;H3BT71;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 DRDYSDHPS(0.986)GGS(0.014)YR;DRDYSDHPS(0.966)GGS(0.033)YR 123.4 0.00041717 28649000 2740.1 2110.79 2797.1 2755.65 2104.03 1680.66 2262.36 2806.86 1410.79 2791.83 TRUE FALSE 2778.469854 2341.25319 2090.937511 2578.914943 2390.634508 1978.701453 2691.631 2568.399723 1546.302683 2222.853514 1.249956345 1.053264723 0.940654658 1.160182138 1.075480005 0.890162776 1.210889959 1.155451633 0.69563859 1 11.11819716 -5.272853854 4.562134952 1.029436135 1.262165021 0.185271632 0.144108444 0.317898879 17.20967829 0.035231565 0.232932168 5.34E-06 5.272853854 0.232728886 DRDYSDHPSGGSYRDS(ph)YESYGNSR ddPTM_K562_Paclitaxel_30min_R1 1 DRDYSDHPSGGSYRDSYESYGNSR 24 2 P38159;P38159-2;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 DRDYSDHPS(0.089)GGS(0.13)Y(0.112)RDS(0.299)Y(0.112)ES(0.115)Y(0.123)GNS(0.019)R 45.913 0.026123 85003000 1704.6 1666.3 2269.5 1985.7 1397.1 1566.1 1292.8 1990.3 1415 1821.9 TRUE FALSE 1728.469659 1848.232269 1696.536656 1858.34609 1587.408673 1843.825846 1538.102051 1821.211592 1550.917072 1450.59578 1.19155845 1.274119431 1.169544734 1.281091614 1.094314967 1.271081766 1.060324366 1.255492134 1.069158682 1 10.50242984 -10.18561872 0.230673469 0.90448588 1.248556282 0.423204319 0.075141001 8.229817285 0.673825258 0.753376182 0.160162076 6.52E-11 10.18561872 0.344070401 DRDYSDHPSGGSYRDSYESYGNSR ddPTM_K562_Paclitaxel_30min_R1 2 DRDYSDHPSGGSYRDSYESYGNSR 24 2 P38159;P38159-2;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 0 ; 51.044 0.012105 117263000 1633.41 1455.83 1444.46 1461.78 1447.87 1305.2 1335.8 1305.61 3117.8 1887.57 FALSE TRUE 1656.28278 1614.782443 1079.788208 1368.027973 1645.094407 1536.658894 1589.261077 1194.690281 3417.278621 1502.882198 1.102070929 1.074457096 0.718478274 0.910269598 1.094626318 1.022474613 1.057475482 0.794932752 2.273816687 1 10.55351621 -8.731918257 24.99997465 1.636910839 0.973404442 0.423566129 0.310333502 152.4486564 129101.7453 0.19112763 0.07221651 1.85E-09 8.731918257 -0.663506397 DREEALHQFR ddPTM_K562_Paclitaxel_30min_R1 1 DREEALHQFR 10 1 A0A2R8Y4A4;A0A2R8YFS5;A0A2R8YDT5;A0A2R8YFR4;A0A2R8YCW1;A0A2R8Y5G6;A0A0J9YVQ7;O00571;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;A0A0D9SG12;A0A0D9SFB3;F6S8Q4;A0A2R8Y7T2;A0A0D9SF53;O00571-2;O15523-2;O15523;A0A087WVZ1;A0A2R8YDH3 A0A2R8Y4A4 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 118.71 0.0033115 51546000 2058.8 1921.3 2506 1855.5 1437.6 1719.4 1615.4 2253.7 1918.2 2771.5 FALSE TRUE 2087.629552 2131.074031 1873.329306 1736.496535 1633.425459 2024.311448 1921.913717 2062.234118 2102.451681 2206.666779 0.94605564 0.96574347 0.84894073 0.786931925 0.74022298 0.917361637 0.870957834 0.934547136 0.952772617 1 11.10765307 -8.561141627 1.297492517 0.993353065 0.86197536 0.330684313 0.064602155 0.579701355 1.772844009 0.066985453 0.022360035 2.75E-09 8.561141627 -0.131377704 DREEDEEDAYER ddPTM_K562_Paclitaxel_30min_R1 2 DREEDEEDAYER 12 1 P49756 P49756 RBM25 RNA-binding protein 25 0 ; 159.5 0.00089193 8417900 2734.2 2852.7 3677.8 2465.89 2486.4 2079.09 2267.9 3130.6 2389.7 3017.2 FALSE TRUE 2772.487236 3164.167433 2749.293904 2307.738852 2825.089775 2447.78742 2698.222186 2864.635989 2619.241362 2402.292984 1.154100376 1.317144684 1.144445712 0.96064005 1.17599718 1.018937921 1.123186141 1.192459042 1.090308876 1 11.2301964 -5.990898856 22.64439152 1.088471299 1.234415949 0.379337308 0.078727538 64.42118307 160274.9292 0.019862697 0.041210611 1.02E-06 5.990898856 0.14594465 DREEDEEDAYERR ddPTM_K562_Paclitaxel_30min_R1 2 DREEDEEDAYERR 13 2 P49756 P49756 RBM25 RNA-binding protein 25 0 ; 115.33 0.0018936 12092600 3706.4 4031 5083.4 3941.6 3522.4 4144.4 3662 4657.6 3563.2 4990.6 FALSE TRUE 3758.301035 4471.118212 3800.032799 3688.803418 4002.210515 4879.35115 4356.845383 4261.907808 3905.461281 3973.512981 0.945838369 1.125230554 0.956340855 0.928348148 1.007222207 1.227969098 1.096471914 1.072579309 0.982873669 1 11.95619934 -7.029445913 24.97385663 1.085773587 0.992775937 0.211790609 0.079799388 1050.419563 890885.9399 0.026907988 0.026951901 9.34E-08 7.029445913 -0.092997649 DRELWVQR ddPTM_K562_Paclitaxel_30min_R1 1 DRELWVQR 8 1 Q9Y3C8 Q9Y3C8 UFC1 Ubiquitin-fold modifier-conjugating enzyme 1 0 128.61 0.0069072 6590000 2223.9 2268.3 3257.9 2637.9 2145.7 2289.7 2373.1 2959.2 2775.6 3740.8 FALSE TRUE 2255.041461 2515.960665 2435.402852 2468.716901 2437.980667 2695.746146 2823.383337 2707.797489 3042.208782 2978.422907 0.757126013 0.844729155 0.817682018 0.828867148 0.818547514 0.905091799 0.94794575 0.909138015 1.02141599 1 11.5403329 -7.716914979 0.668436213 1.00541844 0.799150783 0.855088005 0.031125658 0.267134484 0.240689213 0.026309425 0.018399448 1.92E-08 7.716914979 -0.206267657 DRMSPVT(ph)IALISCRHVET(ph)LEKDR ddPTM_K562_Paclitaxel_30min_R1 1 DRMSPVTIALISCRHVETLEKDR 23 3 Q9UHA7 Q9UHA7 IL36A Interleukin-36 alpha 2 DRMS(0.444)PVT(0.556)IALIS(0.002)CRHVET(0.998)LEKDR 47.757 0.015939 2072300000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 DRNVIPDT(ph)PPSTPLVPSR ddPTM_K562_Paclitaxel_30min_R1 2 DRNVIPDTPPSTPLVPSR 18 1 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 DRNVIPDT(1)PPSTPLVPSR;DRNVIPDT(1)PPSTPLVPSR 131.56 5.91E-08 87813000 3658.4 3885 5031.4 4165.1 3840.4 3589.2 3386.1 4406.2 3652.6 4661.7 TRUE FALSE 3709.628887 4309.177438 3761.160842 3897.969128 4363.527499 4225.694225 4028.594798 4031.865807 4003.44855 3711.642981 0.999457358 1.160989206 1.013341224 1.05020045 1.175632333 1.138496953 1.08539394 1.086275223 1.078618976 1 11.85784223 -2.025407395 21.94826722 1.085431842 0.005430382 0 0.06151146 0 0 0.013706813 0 0.009431757 2.025407395 -1.08000146 DRQS(ph)PLHGNHITISHTQATGSR ddPTM_K562_Paclitaxel_30min_R1 2 DRQSPLHGNHITISHTQATGSR 22 1 Q86VQ1;H7C2L5 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 DRQS(1)PLHGNHITISHTQATGSR;DRQS(0.998)PLHGNHIT(0.002)ISHTQATGSR 77.631 0.00092535 45537000 1678.36 1801.34 2683.18 2131.88 1762.96 1790.21 1854.21 2395.68 1911.3 2298.69 TRUE FALSE 1701.862218 1998.016393 2005.778024 1995.150759 2003.104999 2107.678608 2206.036668 2192.152031 2094.888905 1830.215716 0.929869743 1.091683551 1.09592438 1.090117816 1.094463883 1.151601196 1.205342435 1.197756096 1.144613111 1 10.83779798 -4.043841366 0.713265784 1.143712711 1.81E-12 0.494796429 0.05706811 11.4610646 1.169542345 0.022477553 15.66884091 9.04E-05 4.043841366 -1.143712711 DRREMT(ph)T(ph)TKADR ddPTM_K562_Paclitaxel_30min_R1 1 DRREMTTTKADR 12 3 A0A0B4J1S2;Q8WWV6-4;Q8WWV6;Q8WWV6-3 A0A0B4J1S2 FCAMR High affinity immunoglobulin alpha and immunoglobulin mu Fc receptor 2 DRREMT(0.985)T(0.507)T(0.507)KADR 59.067 0.027322 0 432.28 430.48 654.63 498.89 595.63 412.73 471.1 495.31 663.76 818.34 TRUE FALSE 438.3332537 477.4812622 489.3605601 466.8934283 676.7648901 485.9218705 560.4887657 453.2303239 727.5171138 651.5618588 0.672742346 0.73282568 0.751057714 0.716575751 1.038680949 0.745780103 0.860223413 0.695605978 1.116574127 1 9.347758343 -2.935121748 0.115245025 1.091302313 3.13E-11 0.37760991 0.120634685 92.39396134 0.917237847 1.020344085 15.76764337 0.001161123 2.935121748 -1.091302313 DRS(ph)ATVS(ph)S(ph)S(ph)VPMPAGGK ddPTM_K562_Paclitaxel_30min_R1 2 DRSATVSSSVPMPAGGK 17 1 A0A0U1RRL8;Q8TB22-4;Q8TB22;Q8TB22-2 A0A0U1RRL8 SPATA20 Spermatogenesis-associated protein 20 4 DRS(0.996)AT(0.004)VS(1)S(1)S(1)VPMPAGGK;DRS(0.999)AT(0.009)VS(1)S(1)S(0.993)VPMPAGGK 104.2 0.0010742 399860000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 DRS(ph)SPPPGYIPDELHQVAR ddPTM_K562_Paclitaxel_30min_R1 1 DRSSPPPGYIPDELHQVAR 19 1 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 DRS(0.5)S(0.5)PPPGYIPDELHQVAR 93.812 0.00093162 66052000 1306.7 957.02 1701.4 1199.6 1172.9 1341.1 1057 1595.8 1430.1 1493.1 TRUE FALSE 1324.997832 1061.51068 1271.860527 1122.663025 1332.668837 1578.925255 1257.560232 1460.226829 1567.467495 1188.8054 1.114562426 0.892922155 1.069864359 0.944362319 1.121015127 1.32816124 1.057835228 1.228314431 1.318523195 1 10.21529686 -6.957733819 5.905872734 1.196284797 1.003894065 0.369684433 0.111191236 0.18389283 15.99457852 0.033131702 0.037320632 1.10E-07 6.957733819 -0.192390731 DRS(ph)SSAPNVHINTIEPVNIDDLIR ddPTM_K562_Paclitaxel_30min_R1 2 DRSSSAPNVHINTIEPVNIDDLIR 24 1 A0A2R8Y679;A0A2R8Y492;A0A2R8YDP5;H7C560;A0A2U3TZI2;A0A2R8Y8E0;P15056 A0A2R8Y679 BRAF Serine/threonine-protein kinase B-raf 1 DRS(0.333)S(0.333)S(0.333)APNVHINTIEPVNIDDLIR;DRS(0.333)S(0.333)S(0.333)APNVHINTIEPVNIDDLIR 105.22 3.94E-06 45867000 5189.8 4743.3 7226.6 5445.7 4789.7 4627 4712.2 5946.4 4426 6765.4 TRUE FALSE 5262.473212 5261.189535 5402.155453 5096.437176 5442.13823 5447.533484 5606.315351 5441.216204 4851.137076 5386.607766 0.976954967 0.976716658 1.002886359 0.946131108 1.010308986 1.011310591 1.040787745 1.010137816 0.900592225 1 12.3951613 -6.824577776 24.99996785 0.999082406 0.977688241 0.059579471 0.036702287 192.2965305 76138.55137 0.011649653 0.013209472 1.50E-07 6.824577776 -0.021394165 DRSS(ph)PPPGYIPDELHQVAR ddPTM_K562_Paclitaxel_30min_R1 1 DRSSPPPGYIPDELHQVAR 19 1 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 DRS(0.223)S(0.756)PPPGY(0.021)IPDELHQVAR 111.09 0.00025999 75115000 654.08 575.71 788.62 729.03 642.39 537.99 453.31 822.37 823.53 721.44 TRUE FALSE 663.239138 638.5679647 589.5231275 682.2732788 729.8943938 633.3949727 539.3232061 752.5045354 902.6337361 574.410132 1.15464387 1.111693421 1.026310461 1.187780718 1.270685096 1.102687675 0.938916596 1.310047462 1.571409844 1 9.165937387 -8.444970967 11.03232865 1.337217823 1.11864381 0.209622379 0.154559342 0.868184336 120.4867058 0.081639284 0.039151123 3.59E-09 8.444970967 -0.218574013 DRSWVIGS(ph)PEILR ddPTM_K562_Paclitaxel_30min_R1 2 DRSWVIGSPEILR 13 1 E7ERL6;A0A669KBJ4;Q6P0Q8-2;Q6P0Q8 E7ERL6;Q6P0Q8-2 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 DRS(0.018)WVIGS(0.982)PEILR;DRSWVIGS(1)PEILR 108.25 0.0036101 24869000 4003.9 3950.7 5212.1 3955.7 3832.4 3811.1 3442.6 4736.1 4362.3 4928 TRUE FALSE 4059.966953 4382.050786 3896.240893 3701.999107 4354.437763 4486.945075 4095.815378 4333.738743 4781.318406 3923.670895 1.034736873 1.116824245 0.993009097 0.94350398 1.109786697 1.143557957 1.043873324 1.104511275 1.218582938 1 11.93798832 -6.862660182 24.99999997 1.107646779 1.02667962 0.2564186 0.067460159 16.82937583 4128.549256 0.021215222 0.024055802 1.37E-07 6.862660182 -0.080967159 DRVS(ph)RT(ph)VSLPT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 DRVSRTVSLPTR 12 2 O75037-3;O75037-4;O75037-2;O75037 O75037-3 KIF21B Kinesin-like protein KIF21B 3 DRVS(0.998)RT(0.993)VS(0.01)LPT(0.999)R 68.557 0.029413 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 DRWIS(ph)ENQDSADVDPQEHSFTR ddPTM_K562_Paclitaxel_30min_R1 2 DRWISENQDSADVDPQEHSFTR 22 1 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 DRWIS(1)ENQDSADVDPQEHSFTR;DRWIS(0.976)ENQDS(0.024)ADVDPQEHSFTR 116.27 9.79E-06 35889000 1491.2 1581.86 1833.62 1644.39 1294.35 1452.7 1258.38 1961.32 2019.16 1880.14 TRUE FALSE 1512.081401 1754.572824 1370.699953 1538.926185 1470.662384 1710.315948 1497.151036 1794.693624 2213.10934 1496.966436 1.010097063 1.172085614 0.915651761 1.028029853 0.982428429 1.14252124 1.000123316 1.198887016 1.478396099 1 10.54782616 -8.394802776 4.749372252 1.267859879 1.038853531 0.308480275 0.128960447 0.232028172 7.867280775 0.070530951 0.032027319 4.03E-09 8.394802776 -0.229006348 DRWPEVSPEDTQSLS(ph)LSEESPSKETSLDVSSK ddPTM_K562_Paclitaxel_30min_R1 1 DRWPEVSPEDTQSLSLSEESPSKETSLDVSSK 32 2 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 DRWPEVSPEDTQSLS(0.64)LS(0.149)EES(0.149)PS(0.033)KET(0.008)S(0.01)LDVS(0.004)S(0.006)K 93.596 2.58E-10 31062000 1186.1 699.24 3326.9 1378 907.35 826.44 797.8 1237.1 976.75 2166.7 TRUE FALSE 1202.709059 775.5853879 2486.982948 1289.621248 1030.946432 972.9975302 949.1783852 1132.000633 1070.571202 1725.125351 0.697171982 0.449582048 1.441624487 0.747552198 0.597606679 0.564015554 0.550208357 0.656184568 0.620575891 1 10.75248548 DS(ph)ELLTFSLSRHR ddPTM_K562_Paclitaxel_30min_R1 2 DSELLTFSLSRHR 13 1 J3JS66;A6NNM2;J9JIE8;Q8IVV8 J3JS66 NKAIN4 Sodium/potassium-transporting ATPase subunit beta-1-interacting protein 4 1 DS(0.999)ELLT(0.001)FSLSRHR;DS(0.965)ELLT(0.025)FS(0.005)LS(0.006)RHR 84.479 0.014619 46619000 4454.4 5287 4585.3 5225.5 5142.7 5030.1 5629.2 4903.6 5112 5117.8 TRUE FALSE 4516.775343 5864.252539 3427.684305 4890.359818 5843.222807 5922.117609 6697.311314 4487.008573 5603.030441 4074.789551 1.108468373 1.439154701 0.841192965 1.20015028 1.433993764 1.453355452 1.643596861 1.101163267 1.375047808 1 11.99250984 -5.20433596 20.12933234 1.285512981 1.108455495 0.044397018 0.230276689 16154.40918 5692402.934 0.058817393 46.7580442 6.25E-06 5.20433596 -0.177057486 DS(ph)GRLSPDLSVCGQPR ddPTM_K562_Paclitaxel_30min_R1 1 DSGRLSPDLSVCGQPR 16 1 Q8TF76-2;Q8TF76 Q8TF76-2 GSG2 Serine/threonine-protein kinase haspin 1 DS(0.932)GRLS(0.068)PDLSVCGQPR 128.45 7.68E-05 26194000 1331.7 1430.9 1857.5 1445.8 1157.5 910.43 1131.6 1453.1 1069 1662 TRUE FALSE 1350.347909 1587.130501 1388.551152 1353.072859 1315.171097 1071.881977 1346.315193 1329.650085 1171.682226 1323.283488 1.020452474 1.199388125 1.049322511 1.022511708 0.993869499 0.810016892 1.017404967 1.004811212 0.885435538 1 10.36990645 -6.449240903 1.77833132 0.947644833 1.106998139 0.427165691 0.072868836 0.328419723 2.063426123 0.023612946 0.040929708 3.55E-07 6.449240903 0.159353306 DS(ph)GSDGEDDVNEQHSGSDTGSVER ddPTM_K562_Paclitaxel_30min_R1 1 DSGSDGEDDVNEQHSGSDTGSVER 24 0 Q96ST2;Q96ST2-3;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 1 DS(0.5)GS(0.5)DGEDDVNEQHSGSDTGSVER 49.088 0.029074 3853800 246.52 222.83 312.01 303.28 325.83 346.38 246.59 330.8 228.35 300.05 TRUE FALSE 249.9720406 247.159333 233.2392166 283.8289782 370.2135623 407.8056296 293.3791652 302.6964752 250.2840378 238.8996453 1.046347475 1.03457388 0.976306249 1.188067809 1.549661415 1.707016472 1.228043536 1.267044473 1.047653451 1 7.900260902 -6.514300896 7.458051327 1.333709152 1.029850666 0.274723709 0.199502921 0.175891911 64.40493295 0.061342989 0.084918815 3.06E-07 6.514300896 -0.303858486 DS(ph)S(ph)S(ph)S(ph)GSGSDNDVEVIK ddPTM_K562_Paclitaxel_30min_R1 1 DSSSSGSGSDNDVEVIK 17 0 P46100-4;P46100;P46100-2;P46100-5;P46100-3;A0A096LNX6 P46100-4 ATRX Transcriptional regulator ATRX 4 DS(0.999)S(0.989)S(0.989)S(0.989)GS(0.028)GS(0.007)DNDVEVIK 59.367 0.028161 9454100 158.8 0 170.45 177.19 150.12 61.032 178.95 186.97 321.6 178.5 TRUE FALSE 161.0236899 0 127.4177894 165.8258265 170.5688856 71.85516827 212.9048283 171.0857315 352.4911169 142.121602 1.132999401 0 0.896540621 1.166788329 1.200161574 0.505589349 1.498046921 1.20379822 2.480207878 1 7.150982046 -7.841620105 6.96151648 1.572556406 0.817863285 0.343735089 0.493017534 0.259492297 18.63535672 0.206010186 0.138770993 1.44E-08 7.841620105 -0.754693121 DSAIPVES(ph)DT(ph)DDEGAPR ddPTM_K562_Paclitaxel_30min_R1 2 DSAIPVESDTDDEGAPR 17 0 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 2 DSAIPVES(1)DT(1)DDEGAPR;DSAIPVES(1)DT(1)DDEGAPR 204.9 6.14E-17 92939000 7875.5 6772.5 9237.5 7016.3 6262.1 6431 6666 7859.8 8086.2 9115.7 TRUE FALSE 7985.781298 7511.944453 6905.378877 6566.305922 7115.104038 7571.447554 7930.838701 7192.060931 8862.91564 7257.915336 1.100285816 1.035000287 0.951427312 0.904709633 0.980323372 1.04319866 1.092715791 0.99092654 1.22113792 1 12.82533951 -7.444676752 3.726716981 1.07508384 0.989626724 0.205066673 0.07582881 0.392752446 10.37061711 0.029019756 0.024584449 3.59E-08 7.444676752 -0.085457116 DSAIPVES(ph)DTDDEGAPR ddPTM_K562_Paclitaxel_30min_R1 2 DSAIPVESDTDDEGAPR 17 0 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 1 DSAIPVES(0.809)DT(0.191)DDEGAPR;DSAIPVES(0.956)DT(0.044)DDEGAPR 300.87 5.10E-178 177878000 7567.9 6993.2 8705 7977.8 6274.4 5497.7 6171.4 7664.2 7425.9 8478.9 TRUE FALSE 7673.873949 7756.741225 6507.315088 7466.139615 7129.079506 6472.639903 7342.390933 7013.078372 8139.190875 6750.895526 1.136719406 1.148994411 0.963918796 1.105948031 1.056019824 0.958782413 1.087617325 1.038836751 1.205646102 1 12.72086318 -5.70294865 24.99925209 1.05348218 1.142857715 0.218019924 0.068715372 117.3508044 50154.15624 0.01693049 0.044793839 1.98E-06 5.70294865 0.089375535 DSALAEAPEGLS(ph)PAPPAR ddPTM_K562_Paclitaxel_30min_R1 3 DSALAEAPEGLSPAPPAR 18 0 Q9H9J4-2;Q9H9J4;C9JPC9 Q9H9J4-2 USP42 Ubiquitin carboxyl-terminal hydrolase 42 1 DSALAEAPEGLS(1)PAPPAR;DSALAEAPEGLS(1)PAPPAR;DSALAEAPEGLS(1)PAPPAR 220.1 2.76E-32 234553000 7511.41 7437.34 10280.3 9063.83 6978.53 6652.39 7394.44 8838.6 5096.75 9373.7 TRUE FALSE 7616.592915 8249.373933 7684.91112 8482.516512 7929.123933 7832.097962 8797.496388 8087.705761 5586.31561 7463.334795 1.020534804 1.105320096 1.029688649 1.136558488 1.062410323 1.049409973 1.178762126 1.083658443 0.748501275 1 12.86560469 -8.737096221 24.94184634 0.87425073 1.085372678 0.571050082 0.072452382 122.6984674 125716.7615 0.045287791 0.017099169 1.83E-09 8.737096221 0.211121947 DSALAEAPEGLS(ph)PAPPARSEEPCEQPLLVHPSGDHAR ddPTM_K562_Paclitaxel_30min_R1 3 DSALAEAPEGLSPAPPARSEEPCEQPLLVHPSGDHAR 37 1 Q9H9J4-2;Q9H9J4;C9JPC9 Q9H9J4-2 USP42 Ubiquitin carboxyl-terminal hydrolase 42 1 DS(0.001)ALAEAPEGLS(0.868)PAPPARS(0.13)EEPCEQPLLVHPSGDHAR;DSALAEAPEGLS(0.981)PAPPARS(0.019)EEPCEQPLLVHPSGDHAR;DSALAEAPEGLS(0.98)PAPPARS(0.018)EEPCEQPLLVHPS(0.001)GDHAR 99.061 3.60E-17 87341000 2582.27 2486.32 3594 3301.2 2606.7 2226.4 1951.43 2342.5 3400.29 2971.09 TRUE FALSE 2618.429747 2757.784826 2686.65025 3089.475808 2961.776672 2621.22078 2321.703655 2143.490004 3726.903047 2365.580227 1.106886893 1.165796363 1.135725696 1.30601185 1.252029687 1.108066744 0.981452089 0.906115962 1.575471001 1 11.20797837 -7.365885489 7.753902536 1.099326153 1.194672212 0.044109651 0.177632276 0.928817731 61.52901722 0.062187898 0.054753907 4.31E-08 7.365885489 0.095346059 DSAPSTPT(ph)SPTEFLTPGLR ddPTM_K562_Paclitaxel_30min_R1 1 DSAPSTPTSPTEFLTPGLR 19 0 Q9NZJ4-2;Q9NZJ4 Q9NZJ4-2 SACS Sacsin 1 DSAPSTPT(0.436)S(0.436)PT(0.127)EFLT(0.001)PGLR 143.55 2.94E-12 26016000 1001.6 907.38 1391.9 1117 1012.8 1007.7 910.44 1051.9 1023.8 1409.2 TRUE FALSE 1015.62549 1006.450817 1040.49763 1045.36062 1150.760507 1186.401446 1083.191237 962.5345292 1122.140564 1122.004266 0.905188617 0.897011577 0.927356215 0.931690414 1.02562935 1.057394773 0.965407414 0.85787065 1.000121477 1 10.13186245 -6.571484796 7.592513146 0.980078998 0.911931206 0.322837932 0.04950861 0.323776777 42.77412016 0.016292492 0.02112827 2.68E-07 6.571484796 -0.068147792 DSAYIS(ph)SSPLGSHQVFDFR ddPTM_K562_Paclitaxel_30min_R1 1 DSAYISSSPLGSHQVFDFR 19 0 Q9HCD6;Q9HCD6-2 Q9HCD6 TANC2 Protein TANC2 1 DS(0.007)AY(0.11)IS(0.334)S(0.274)S(0.274)PLGSHQVFDFR 73.918 0.0091427 11611000 604.85 723.87 961.46 713.5 504.18 730.95 405.93 721.02 527.16 1130 TRUE FALSE 613.3197661 802.9045746 718.7275318 667.7393035 572.8578518 860.5737195 482.9530984 659.7648505 577.7960734 899.7053797 0.681689562 0.892408329 0.798847654 0.742175515 0.636717157 0.95650614 0.536790275 0.73331211 0.642205867 1 9.813308839 -6.27844461 5.795169971 0.733346026 0.801409418 0.007123967 0.141364224 0.604641155 77.15634043 0.037688672 0.0592584 5.27E-07 6.27844461 0.068063392 DSAYQSITHYRPVS(ph)ASR ddPTM_K562_Paclitaxel_30min_R1 2 DSAYQSITHYRPVSASR 17 1 P50402;Q5HY57 P50402 EMD Emerin 1 DSAYQS(0.001)IT(0.002)HY(0.042)RPVS(0.706)AS(0.248)R;DSAYQSITHY(0.005)RPVS(0.497)AS(0.497)R 71.894 0.020248 253860000 964.61 1201.64 1355.8 1057.77 959.36 866.05 1024.81 1091.06 1584.98 1721.75 TRUE FALSE 978.1175161 1332.839119 1013.511522 989.9293666 1090.041074 1019.631808 1219.262348 998.3676428 1737.224411 1370.856405 0.713508368 0.972267492 0.739327269 0.72212477 0.795153358 0.74379184 0.889416531 0.728280248 1.267254838 1 10.42086174 -8.754266526 24.99999267 1.133627453 0.79245634 0.661021604 0.098965716 81.80262705 285119.0889 0.065785592 0.023705489 1.76E-09 8.754266526 -0.341171113 DSDAGSS(ph)TPTTSTR ddPTM_K562_Paclitaxel_30min_R1 1 DSDAGSSTPTTSTR 14 0 P51532;A0A2R8Y4C5;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A2R8YGG3;A0A2R8YG32;A0A2R8Y440;A0A2R8Y7F3;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF58;A0A2R8Y6V2;A0A2R8YDA1;A0A0A0MT49;P51532-5;P51532-2;P51532-3;P51532-4;A0A2R8Y523;A0A2R8Y5K3;K7EQF0;A0A2R8YFK5;K7EP28 P51532 SMARCA4 Transcription activator BRG1 1 DSDAGS(0.238)S(0.355)T(0.355)PT(0.049)T(0.002)STR 115.12 0.0023609 6666700 3644.2 3234.6 4893.5 3847.4 3165.3 3504.3 3132.2 3685 3411.7 4802.6 TRUE FALSE 3695.230043 3587.764567 3658.075403 3600.644984 3596.467449 4125.738402 3726.518599 3371.936249 3739.409029 3823.827484 0.966369445 0.938265281 0.956652835 0.941633743 0.940541242 1.078955162 0.974551968 0.881822274 0.977923048 1 11.90080172 -4.858242026 17.85509804 0.963230264 2.033134395 0 0.048335597 11511.93368 1229966.033 0.012130199 76612.55789 1.39E-05 4.858242026 1.069904131 DSDAGSST(ph)PTTSTR ddPTM_K562_Paclitaxel_30min_R1 1 DSDAGSSTPTTSTR 14 0 P51532;A0A2R8Y4C5;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A2R8YGG3;A0A2R8YG32;A0A2R8Y440;A0A2R8Y7F3;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF58;A0A2R8Y6V2;A0A2R8YDA1;A0A0A0MT49;P51532-5;P51532-2;P51532-3;P51532-4;A0A2R8Y523;A0A2R8Y5K3;K7EQF0;A0A2R8YFK5;K7EP28 P51532 SMARCA4 Transcription activator BRG1 1 DSDAGS(0.051)S(0.342)T(0.605)PT(0.001)TSTR 249.58 2.45E-58 7843600 3734.6 3278.8 4708.7 3295.1 2756.5 3007.6 2592.5 3646 2880.9 3979 TRUE FALSE 3786.895922 3636.790472 3519.930449 3083.767034 3131.981968 3540.955631 3084.413341 3336.249542 3157.623317 3168.077616 1.195329276 1.147948666 1.111061936 0.973387463 0.988606451 1.11769851 0.973591469 1.053083272 0.996700113 1 11.62939197 -5.990149597 2.872771629 1.018684482 1.172776912 0.690803131 0.042900596 0.147435929 2.465076046 0.011819236 0.02694496 1.02E-06 5.990149597 0.15409243 DSENLASPS(ph)EYPENGER ddPTM_K562_Paclitaxel_30min_R1 2 DSENLASPSEYPENGER 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 DS(0.003)ENLAS(0.019)PS(0.977)EYPENGER;DSENLAS(0.116)PS(0.884)EYPENGER 204.78 3.10E-17 326710000 2741.5 2134.22 3334.3 2563.2 2055.45 1803.29 2172.9 2791.5 1948.34 3496.6 TRUE FALSE 2779.889458 2367.241357 2492.514727 2398.807824 2335.437089 2123.078162 2585.196432 2554.344651 2135.486762 2783.991001 0.99852674 0.85030496 0.895302724 0.861643527 0.838880976 0.76260238 0.928593674 0.91751182 0.767059506 1 11.44293883 -4.796976467 0.002506323 1.738329077 7.37E-05 0.007183692 0.078366093 1492415.82 509.9470228 173158.0707 180574.5614 1.60E-05 4.796976467 -1.738255353 DSFDDRGPS(ph)LNPVLDYDHGSR ddPTM_K562_Paclitaxel_30min_R1 1 DSFDDRGPSLNPVLDYDHGSR 21 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 DS(0.196)FDDRGPS(0.804)LNPVLDYDHGSR 74.744 0.00224 11598000 1795.3 1424.8 2559.9 2132.3 1484.6 1382.1 1495 1597.8 1825.6 1961.6 TRUE FALSE 1820.439739 1580.364482 1913.621585 1995.543822 1686.827654 1627.196029 1778.668446 1462.056917 2000.957037 1561.824843 1.165585083 1.011870498 1.225247244 1.277700141 1.080036383 1.041855645 1.138839898 0.936120925 1.281166096 1 10.60901695 -6.940685648 24.99966307 1.077265112 1.164754189 0.147852906 0.105973009 154.5356613 65132.05439 0.032236881 0.036553185 1.15E-07 6.940685648 0.087489078 DSFDDRGPSLNPVLDYDHGSR ddPTM_K562_Paclitaxel_30min_R1 1 DSFDDRGPSLNPVLDYDHGSR 21 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 0 85.974 0.0012753 62802000 3164.2 2885.4 4292 3386 3397.6 2847.9 3014.3 3777.8 3373.7 3745.6 FALSE TRUE 3208.508562 3200.43773 3208.431517 3168.837115 3860.410642 3352.935079 3586.247689 3456.85231 3697.758959 2982.244664 1.075870334 1.073164039 1.075844499 1.062567788 1.294464766 1.124299129 1.202533022 1.159144436 1.239924747 1 11.54218291 -6.660044791 20.0186435 1.177544768 1.07221731 0.300797788 0.072805198 3.412447809 663.8266806 0.019773239 0.025527097 2.19E-07 6.660044791 -0.105327458 DSFDDRGPSLNPVLDYDHGSRS(ph)QESGYYDR ddPTM_K562_Paclitaxel_30min_R1 1 DSFDDRGPSLNPVLDYDHGSRSQESGYYDR 30 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 DSFDDRGPSLNPVLDY(0.143)DHGS(0.297)RS(0.39)QES(0.128)GY(0.03)Y(0.011)DR 60.814 0.00064061 72420000 856.94 704.24 1148.9 873.08 860.2 800.33 768.61 977.95 951.43 1383.6 TRUE FALSE 868.9398039 781.1313048 858.8459856 817.0845566 977.3738033 942.2572883 914.4497351 894.8670433 1042.819103 1101.621561 0.788782496 0.709074089 0.779619804 0.741710752 0.887213757 0.855336644 0.830094261 0.812318019 0.946621907 1 10.10541299 -8.395070704 0.156560086 1.098979956 0.636641529 0.717810517 0.045426199 2.333430385 0.376863187 0.460965256 0.475360153 4.03E-09 8.395070704 -0.462338427 DSFSHS(ph)PGAVSSLK ddPTM_K562_Paclitaxel_30min_R1 2 DSFSHSPGAVSSLK 14 0 Q9H6R7;Q9H6R7-3 Q9H6R7 C2orf44 WD repeat and coiled-coil-containing protein C2orf44 1 DSFS(0.011)HS(0.989)PGAVSSLK;DS(0.001)FS(0.226)HS(0.772)PGAVSSLK 274.38 5.77E-107 160959000 10962.4 9291.1 19235.7 12527.1 9644.5 7544.4 7834.6 11361.8 9798.9 14136.7 TRUE FALSE 11115.90742 10305.53372 14379.40963 11723.66788 10958.24418 8882.293411 9321.174451 10396.54417 10740.12813 11255.63278 0.987586184 0.915589014 1.277530096 1.0415823 0.973578687 0.789142075 0.8281342 0.923674784 0.954200296 1 13.45835955 -6.937611725 3.719378655 0.888868861 1.06051179 0.335099326 0.10285363 0.261104529 7.352889895 0.034889877 0.039358015 1.15E-07 6.937611725 0.171642929 DSGS(ph)QEVLSELR ddPTM_K562_Paclitaxel_30min_R1 1 DSGSQEVLSELR 12 0 Q9BVJ6-3;Q9BVJ6;Q9BVJ6-2;X6RJY0 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 DS(0.006)GS(0.994)QEVLSELR 142.19 0.00011865 9969800 737.33 888.55 1259.9 967.2 880.63 807.96 863.1 1104.9 791.95 1319.8 TRUE FALSE 747.6548949 985.5648939 941.8226628 905.168121 1000.586715 951.2403617 1026.868719 1011.031848 868.020336 1050.824036 0.711493903 0.937897175 0.896270575 0.861388863 0.952192452 0.905232779 0.977203304 0.962132397 0.826037763 1 10.03730539 -5.258818788 24.78471481 0.922171449 0.711493819 0.612741328 0.050720024 143.4309883 1356435.225 0.012211719 0.081451419 5.51E-06 5.258818788 -0.210677631 DSGVVGARPRAS(ph)PPPQGPLPGPPGALHR ddPTM_K562_Paclitaxel_30min_R1 1 DSGVVGARPRASPPPQGPLPGPPGALHR 28 2 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 DS(0.469)GVVGARPRAS(0.531)PPPQGPLPGPPGALHR 65.753 0.00046447 56130000 1934.1 2302.1 2615.1 2540.2 1643.5 1889.6 1558.9 1984.3 2471.1 2336.9 TRUE FALSE 1961.183367 2553.451063 1954.885662 2377.282942 1867.372525 2224.694029 1854.693137 1815.721329 2708.460196 1860.638497 1.054037832 1.372352054 1.05065313 1.277670512 1.003619202 1.195661614 0.996804667 0.975859272 1.455661699 1 10.86158207 -6.756266314 24.99044528 1.102557249 1.191938959 0.061076427 0.161174165 387.956703 1874158.906 0.04594197 0.057507011 1.75E-07 6.756266314 0.089381709 DSITPDIATKPGQPLFLDS(ph)ISPK ddPTM_K562_Paclitaxel_30min_R1 1 DSITPDIATKPGQPLFLDSISPK 23 1 Q2TB10 Q2TB10 ZNF800 Zinc finger protein 800 1 DSITPDIATKPGQPLFLDS(0.589)IS(0.411)PK 94.057 0.00016607 12485000 1340.6 823.67 3411.2 1887.2 1072.2 999.85 776.44 1551.5 1553.1 2260.9 TRUE FALSE 1359.372536 913.6010761 2550.000371 1766.163439 1218.251792 1177.159359 923.7654367 1419.690391 1702.282194 1800.127339 0.755153542 0.507520249 1.416566659 0.981132501 0.676758675 0.65393116 0.513166717 0.788661091 0.945645432 1 10.81388325 -6.761732176 24.99964145 0.734512403 0.921800421 0.074728358 0.249905754 19.29480087 1647500.285 0.079678041 0.096112038 1.73E-07 6.761732176 0.187288018 DSITPDIATKPGQPLFLDSIS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 DSITPDIATKPGQPLFLDSISPK 23 1 Q2TB10 Q2TB10 ZNF800 Zinc finger protein 800 1 DSITPDIATKPGQPLFLDS(0.188)IS(0.812)PK 71.085 0.0018384 9411000 1649.3 1426.6 3667.9 2078.4 1431.7 1275.3 863.85 1954.7 1746.1 2935 TRUE FALSE 1672.395289 1582.361012 2741.893281 1945.100727 1626.721779 1501.456549 1027.761028 1788.636034 1913.820707 2336.845389 0.715663645 0.677135518 1.173331062 0.832361754 0.696118702 0.642514287 0.439807029 0.765406236 0.818976179 1 11.19034657 -6.723616954 5.454834462 0.696472993 0.862583237 0.083134329 0.18264097 0.380418556 27.87686148 0.056643797 0.071801853 1.89E-07 6.723616954 0.166110244 DSIVAELDREMSR ddPTM_K562_Paclitaxel_30min_R1 1 DSIVAELDREMSR 13 1 M0QXB4;O14579-3;O14579 M0QXB4 COPE Coatomer subunit epsilon 0 142.76 0.00037037 11311000 1007 1024.6 1429.6 1133.2 1044.2 929.56 939.02 1074 1164.4 1090.8 FALSE TRUE 1021.101107 1136.469293 1068.679799 1060.521624 1186.437718 1094.404414 1117.194143 982.7569963 1276.245823 868.4943612 1.175714147 1.308551147 1.230497107 1.221103638 1.36608569 1.260116891 1.286357394 1.131564049 1.469492353 1 9.762372672 -11.54228524 6.283898023 0.999642037 1.26919774 0.445365944 0.091062511 0.000421987 3.07E-05 0.081473299 0.019734468 2.87E-12 11.54228524 0.269555703 DSLGDFIEHYAQLGPS(ph)SPEQLAAGAEEGGGPR ddPTM_K562_Paclitaxel_30min_R1 4 DSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPR 32 0 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 DSLGDFIEHYAQLGPS(0.598)S(0.402)PEQLAAGAEEGGGPR;DSLGDFIEHYAQLGPS(0.673)S(0.327)PEQLAAGAEEGGGPR;DSLGDFIEHY(0.001)AQLGPS(0.576)S(0.423)PEQLAAGAEEGGGPR;DSLGDFIEHYAQLGPS(0.552)S(0.447)PEQLAAGAEEGGGPR 128.91 2.55E-21 203525000 6226.97 6596.32 8967.05 7127.27 5536.96 5871.07 6430.64 9061.84 5918.56 9305.81 TRUE FALSE 6314.166792 7316.528525 6703.207324 6670.158803 6291.187694 6912.221831 7650.82037 8291.98013 6487.064133 7409.280814 0.852196988 0.987481607 0.90470418 0.900243758 0.849095594 0.932914004 1.032599595 1.119134277 0.875532227 1 12.8551178 -7.64925082 4.73280209 1.016287584 0.903064991 0.368736963 0.066109355 0.220354145 8.175589927 0.025490373 0.019363158 2.24E-08 7.64925082 -0.113222593 DSLGDFIEHYAQLGPS(ph)SPEQLAAGAEEGGGPRR ddPTM_K562_Paclitaxel_30min_R1 1 DSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRR 33 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 DSLGDFIEHYAQLGPS(0.5)S(0.5)PEQLAAGAEEGGGPRR 94.957 1.47E-10 34812000 436.44 378.78 566.71 540.07 317.41 304.97 388.91 417.65 334.4 592.58 TRUE FALSE 442.5515065 420.1364814 423.6370515 505.4323275 360.6466158 359.0521475 462.7036423 382.1680256 366.5206141 471.8118707 0.937982984 0.890474588 0.897894008 1.071258183 0.764386482 0.761007024 0.980695211 0.81000087 0.776836356 1 8.882067907 -6.781754791 24.99995953 0.841524073 0.941514231 0.221271913 0.091350116 376.1053437 462829.5443 0.028240102 0.032058194 1.65E-07 6.781754791 0.099990159 DSLGDFIEHYAQLGPSS(ph)PEQLAAGAEEGGGPRR ddPTM_K562_Paclitaxel_30min_R1 1 DSLGDFIEHYAQLGPSSPEQLAAGAEEGGGPRR 33 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 DSLGDFIEHYAQLGPS(0.061)S(0.939)PEQLAAGAEEGGGPRR 161.91 1.80E-46 30290000 806.38 859.8 1300.6 754.84 783.84 571.62 871.69 1021.1 822.75 1138.8 TRUE FALSE 817.6718079 953.6758717 972.2474444 706.4279409 890.6122785 672.9887811 1037.088627 934.3511815 901.7788136 906.7119349 0.901798881 1.051795874 1.072278203 0.779109565 0.982243913 0.74222998 1.143790643 1.030482941 0.994559329 1 9.824500465 -7.798010678 24.99987175 1.04474833 0.930626487 0.236258726 0.105464533 287.3286104 196413.1905 0.044825755 0.030222485 1.59E-08 7.798010678 -0.114121843 DSLITPHVS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 DSLITPHVSR 10 0 P49792;Q99666;O14715;Q7Z3J3;P0DJD1;P0DJD0;F8VYC4;A0A1W2PNU4;A0A286YES2;J3KQ37;H7BZ48;J3KNE0;A6NKT7 P49792;J3KNE0 RANBP2;RGPD5;RGPD8;RGPD4;RGPD2;RGPD1;RGPD6;RGPD3 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 1;RanBP2-like and GRIP domain-containing protein 3 1 DSLITPHVS(1)R 96.866 0.0086698 12476000 3921.8 3817.5 4964.5 4468.9 3791.1 3246.2 3425.1 5184.5 2318.1 5624.4 TRUE FALSE 3976.7173 4234.30756 3711.150575 4182.284756 4307.512004 3821.867991 4074.994845 4744.044364 2540.763863 4478.144193 0.888027971 0.945549625 0.828725118 0.933932579 0.961896674 0.853449069 0.909974014 1.059377314 0.56736982 1 12.12868527 -8.739359977 24.99993827 0.783684103 0.919210759 0.192050099 0.113812897 314.9763518 356641.8763 0.07048833 0.026594174 1.82E-09 8.739359977 0.135526656 DSLLDGHFVLATLSDTDSHSQDLGS(ph)PER ddPTM_K562_Paclitaxel_30min_R1 2 DSLLDGHFVLATLSDTDSHSQDLGSPER 28 0 Q99638 Q99638 RAD9A Cell cycle checkpoint control protein RAD9A 1 DSLLDGHFVLATLS(0.001)DT(0.015)DS(0.012)HS(0.126)QDLGS(0.847)PER;DSLLDGHFVLATLSDTDS(0.026)HS(0.08)QDLGS(0.893)PER 117.85 2.73E-12 35123000 4646.1 4631.4 5839.7 5244.2 4329.8 4310.6 5547.4 7795.6 3942 8458.9 TRUE FALSE 4711.159734 5137.071914 4365.395511 4907.860484 4919.592064 5075.024386 6599.990191 7133.315121 4320.646713 6734.971537 0.699507 0.762745898 0.648168368 0.728712877 0.730454767 0.75353316 0.979958142 1.059145548 0.641524124 1 12.71745613 -7.66236788 5.343462035 0.924325393 0.716748161 0.45654991 0.107152043 0.187595064 8.312694429 0.040562283 0.030941325 2.18E-08 7.66236788 -0.207577233 DSLLQDGEFSMDLR ddPTM_K562_Paclitaxel_30min_R1 4 DSLLQDGEFSMDLR 14 0 P07737;K7EJ44 P07737 PFN1 Profilin-1 0 ;;; 190.85 5.78E-06 152111000 4489.67 4805.67 6029.91 4878.36 3387.61 3416.16 4945.89 5674.21 3629.31 6517.72 FALSE TRUE 4552.539232 5330.369302 4507.584644 4565.483824 3849.059835 4021.968011 5884.346808 5192.150443 3977.921442 5189.405086 0.877275749 1.027163849 0.868612985 0.879770176 0.741715046 0.775034507 1.133915489 1.000529031 0.766546719 1 12.34135344 -7.736074544 24.99925647 0.975292161 0.864817265 0.205042463 0.109520876 407.3524912 401481.2373 0.044426109 0.034398905 1.84E-08 7.736074544 -0.110474897 DSLS(ph)PVLHPSDLILTR ddPTM_K562_Paclitaxel_30min_R1 4 DSLSPVLHPSDLILTR 16 0 Q9HCN4-3;Q9HCN4-2;Q9HCN4-4;Q9HCN4;Q9HCN4-5 Q9HCN4-3 GPN1 GPN-loop GTPase 1 1 DS(0.078)LS(0.922)PVLHPSDLILTR;DS(0.003)LS(0.997)PVLHPSDLILTR;DS(0.049)LS(0.951)PVLHPSDLILTR;DS(0.001)LS(0.999)PVLHPSDLILTR 115.91 0.00046761 200195000 13054.9 11835.6 17087.6 15444.6 12351.1 11290.5 11893.4 14881.2 8718 16998.6 TRUE FALSE 13237.70888 13127.85083 12773.62404 14454.05248 14033.52893 13292.71165 14150.11056 13616.94917 9555.402853 13534.27599 0.9780877 0.969970676 0.943798106 1.067959047 1.036888042 0.982151661 1.045501848 1.006108431 0.706015073 1 13.72433009 -8.693995893 24.99974777 0.853005653 1.004589386 0.393604482 0.074865529 42.36056761 15701.5581 0.047097098 0.017801009 2.02E-09 8.693995893 0.151583733 DSNAPKS(ph)PLTGYVR ddPTM_K562_Paclitaxel_30min_R1 1 DSNAPKSPLTGYVR 14 1 H0YNS8;H0YKM5;Q9NP66 H0YNS8 HMG20A High mobility group protein 20A 1 DSNAPKS(1)PLTGYVR 193.54 1.12E-06 18505000 1418.4 1149.3 2644.1 1633.3 960.09 973.35 1077.6 1188.4 1132.9 1834.4 TRUE FALSE 1438.261976 1274.784461 1976.564253 1528.547448 1090.870512 1145.959956 1282.068975 1087.438002 1241.720107 1460.548273 0.984741143 0.872812275 1.353302927 1.046557294 0.746891104 0.784609435 0.877799795 0.744540952 0.850173959 1 10.51229433 -6.705757937 7.41566294 0.821158659 1.073075462 0.418137988 0.132549023 0.215804913 24.00021564 0.039715527 0.05109157 1.97E-07 6.705757937 0.251916803 DSPAFPDS(ph)PWRER ddPTM_K562_Paclitaxel_30min_R1 3 DSPAFPDSPWRER 13 1 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 DSPAFPDS(1)PWRER;DSPAFPDS(1)PWRER;DSPAFPDS(1)PWRER 86.777 0.014947 52852000 5223.3 5460.5 7273.3 5530.3 4698.2 4952.2 4549.29 5920.8 5141.56 7630.7 TRUE FALSE 5296.442315 6056.695856 5437.06546 5175.611311 5338.174381 5830.403138 5412.494029 5417.791084 5635.429811 6075.559151 0.871762118 0.996895217 0.894907831 0.851874071 0.878630962 0.959648815 0.890863523 0.891735386 0.927557394 1 12.56880147 -9.101973238 5.172507897 0.999995756 0.90617188 0.331660745 0.040686223 0.97592998 47.90261477 0.04002779 0.010421157 7.91E-10 9.101973238 -0.093823876 DSPLQGSGQQNSQAGQRNS(ph)TSSIEPR ddPTM_K562_Paclitaxel_30min_R1 2 DSPLQGSGQQNSQAGQRNSTSSIEPR 26 1 C9J840;A0A0D9SG62;G5E948;A0A0D9SEY1;O95819-2;O95819-6;O95819-3 C9J840 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 DSPLQGSGQQNSQAGQRNS(0.65)T(0.234)S(0.085)S(0.031)IEPR;DSPLQGSGQQNSQAGQRNS(0.716)T(0.183)S(0.072)S(0.028)IEPR 105.74 9.58E-07 68163000 1805.07 1547.69 1741.27 1520.26 1369.41 1385.17 1384.55 1862.92 2708.5 1633.02 TRUE FALSE 1830.346549 1716.672028 1301.664853 1422.757328 1555.946826 1630.810451 1647.261135 1704.653318 2968.663527 1300.209628 1.407731884 1.320304043 1.001119223 1.094252263 1.196689206 1.254267324 1.266919656 1.311060372 2.283219155 1 10.34452853 -8.547192965 24.99955832 1.69345333 1.21673068 0.223344256 0.306876035 278.4272093 286269.4389 0.190678803 0.072076468 2.84E-09 8.547192965 -0.476722649 DSQDASAEQS(ph)DHDDEVASLASASGGFGTK ddPTM_K562_Paclitaxel_30min_R1 1 DSQDASAEQSDHDDEVASLASASGGFGTK 29 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 DS(0.041)QDAS(0.408)AEQS(0.55)DHDDEVASLASASGGFGTK 85.123 2.01E-06 95972000 3324.5 2438.9 6043.5 3704.9 2230.2 2231.6 2193.9 3518.5 2741.7 4123.1 TRUE FALSE 3371.053257 2705.18735 4517.74368 3467.284297 2533.990998 2627.342927 2610.181072 3219.581463 3005.052535 3282.809957 1.026880417 0.824046285 1.376181911 1.056194036 0.771896951 0.800333544 0.79510575 0.980739521 0.915390344 1 11.68071552 -6.683038768 7.819940253 0.868621488 1.076744651 0.301284632 0.144108384 0.311270351 26.92154871 0.044005183 0.056777714 2.07E-07 6.683038768 0.208123163 DSQDASAEQS(ph)DHDDEVASLASASGGFGTKVPAPR ddPTM_K562_Paclitaxel_30min_R1 2 DSQDASAEQSDHDDEVASLASASGGFGTKVPAPR 34 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 DS(0.001)QDAS(0.087)AEQS(0.912)DHDDEVASLASASGGFGTKVPAPR;DS(0.005)QDAS(0.013)AEQS(0.982)DHDDEVASLASASGGFGTKVPAPR 110.25 5.22E-15 156311000 1695.16 1281.38 2849.8 1962.08 1275.26 1496.95 1084.03 1379.63 4269.9 1698.4 TRUE FALSE 1718.89747 1421.285402 2130.332744 1836.240971 1448.972002 1762.413064 1289.719033 1262.42182 4680.042973 1352.265148 1.271124582 1.051040474 1.575380943 1.357900094 1.071514713 1.303304361 0.953747152 0.933560864 3.460891513 1 10.40116234 -8.702475015 24.99999942 2.230571379 1.19551916 0.33895369 0.581320446 66.68120161 28271.55848 0.355379415 0.1343206 1.98E-09 8.702475015 -1.035052219 DSQQTEFTQNAAT(ph)GLNISRDETVLQEEAR ddPTM_K562_Paclitaxel_30min_R1 1 DSQQTEFTQNAATGLNISRDETVLQEEAR 29 1 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 DSQQT(0.001)EFT(0.042)QNAAT(0.472)GLNIS(0.472)RDET(0.013)VLQEEAR 67.367 0.0033657 16656000 216.8 178.16 292.48 289.38 160.58 226.13 145.35 286.06 207.09 196.75 TRUE FALSE 219.8358689 197.6121113 218.6398067 270.820462 182.4537146 266.2309805 172.9294037 261.7574175 226.9819198 156.652242 1.403336882 1.261470048 1.395701739 1.728800422 1.164705416 1.699503161 1.103906344 1.670945874 1.448954173 1 7.291421607 -10.34256547 8.802804809 0.999991679 1.431087376 0.281036594 0.206719728 0 0 0.186010967 0.045114286 4.54E-11 10.34256547 0.431095697 DSQQTEFTQNAATGLNIS(ph)RDETVLQEEAR ddPTM_K562_Paclitaxel_30min_R1 1 DSQQTEFTQNAATGLNISRDETVLQEEAR 29 1 O75113 O75113 N4BP1 NEDD4-binding protein 1 1 DSQQT(0.001)EFT(0.053)QNAAT(0.093)GLNIS(0.813)RDET(0.039)VLQEEAR 48.607 0.011397 15961000 146.12 315.93 344.74 167.02 160.7 168.36 130.29 144.01 223.29 126.93 TRUE FALSE 148.1661308 350.4243058 257.7061233 156.3080848 182.5900607 198.2162821 155.0118473 131.7754516 244.7380022 101.0615963 1.466097273 3.467432918 2.549990626 1.546661545 1.806720528 1.961341294 1.533835334 1.303912232 2.421671645 1 6.659091063 -6.253837155 22.26768069 1.680343206 2.591800015 0.304019367 0.576549153 143.448901 420169.0973 0.148923422 0.250672 5.57E-07 6.253837155 0.911456809 DSRLRIT(ph)PT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 DSRLRITPTR 10 2 C9JZX1;H7C0Z8;C9JXR6;H0Y7R1;A0A140VK87;Q8TBZ2 C9JZX1 MYCBPAP MYCBP-associated protein 2 DSRLRIT(1)PT(1)R 67.879 0.0293 22429000 171.4 263.5 228.3 206.9 200.83 114.65 171.24 280.12 352.09 288.2 TRUE FALSE 173.8001288 292.2698211 170.6628414 193.6303601 228.1864461 134.9815677 203.7318961 256.3220575 385.9098177 229.4646818 0.757415596 1.273702858 0.743743395 0.843835132 0.994429488 0.588245505 0.887857314 1.117043614 1.681783073 1 7.842128307 -8.481529458 4.328235005 1.361006797 0.877359067 0.405115033 0.229221557 0.1877039 7.761603596 0.140513525 0.058336462 3.30E-09 8.481529458 -0.483647729 DSSDS(ph)ADGRATPSENLVPSSAR ddPTM_K562_Paclitaxel_30min_R1 1 DSSDSADGRATPSENLVPSSAR 22 1 Q8N684-2;Q8N684;Q8N684-3;F5H6M0;F5H047;F5H669 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 1 DS(0.035)S(0.056)DS(0.624)ADGRAT(0.266)PS(0.018)ENLVPSSAR 53.188 0.027098 223180000 1714.9 1377 1837.3 1254.5 1245.4 1439.7 1477.8 1807.7 1228.5 2396.5 TRUE FALSE 1738.913891 1527.345517 1373.450892 1174.041985 1415.044565 1695.010581 1758.204835 1654.124602 1346.502914 1908.091985 0.911336511 0.800456964 0.719803292 0.615296325 0.74160186 0.888327499 0.921446581 0.866899822 0.705680295 1 10.89791501 -7.258831521 24.57365888 0.870963064 0.750057853 0.269202376 0.097228562 271.5657259 2558953.515 0.034448933 0.032969926 5.51E-08 7.258831521 -0.120905212 DSSDSADGRAT(ph)PSENLVPSSAR ddPTM_K562_Paclitaxel_30min_R1 1 DSSDSADGRATPSENLVPSSAR 22 1 Q8N684-2;Q8N684;Q8N684-3;F5H6M0;F5H047;F5H669 Q8N684-2 CPSF7 Cleavage and polyadenylation specificity factor subunit 7 1 DSSDSADGRAT(0.992)PS(0.005)ENLVPS(0.001)S(0.002)AR 111.33 0.00026838 206380000 1018.9 1079.1 1594.9 1167.4 854.08 1338.5 866.88 1443.8 1010.9 1782.6 TRUE FALSE 1033.167744 1196.919787 1192.24777 1092.528189 970.4201557 1575.864182 1031.365955 1321.140178 1108.001462 1419.305142 0.727939126 0.843313923 0.840022159 0.769762722 0.68372905 1.110306822 0.726669639 0.9308359 0.780664728 1 10.47096908 DSSFFANPVEIS(ph)PPYCSQGR ddPTM_K562_Paclitaxel_30min_R1 1 DSSFFANPVEISPPYCSQGR 20 0 A0A0C4DFQ2;Q8NCN2 A0A0C4DFQ2 ZBTB34 Zinc finger and BTB domain-containing protein 34 1 DSSFFANPVEIS(0.817)PPY(0.001)CS(0.183)QGR 137.23 2.72E-10 6210400 1389.8 1664.8 1876.2 1458.5 1286.8 1371.6 1844 1567.8 898.85 1916.6 TRUE FALSE 1409.261488 1846.568494 1402.530105 1364.958338 1462.083946 1614.834002 2193.889374 1434.605604 985.1885587 1525.995868 0.92350282 1.210074374 0.91909168 0.894470533 0.958117893 1.058216497 1.437677139 0.940111067 0.645603687 1 10.57553534 -8.524226427 24.99924204 0.812820271 1.057900427 0.226548153 0.174465317 67.60965149 1253988.202 0.117978443 0.045365223 2.99E-09 8.524226427 0.245080155 DSSMLIS(ph)LTY(ph)DVILVILCT(ph)VY(ph)AFKTR ddPTM_K562_Paclitaxel_30min_R1 1 DSSMLISLTYDVILVILCTVYAFKTR 26 1 Q14832 Q14832 GRM3 Metabotropic glutamate receptor 3 4 DS(0.276)S(0.276)MLIS(0.451)LT(0.452)Y(0.544)DVILVILCT(0.892)VY(0.575)AFKT(0.533)R 47.564 0.010045 34105000 1458.5 1507.4 1128.3 1523.3 1400.2 1466.1 1461.9 1430.5 1343.6 1149.5 TRUE FALSE 1478.9235 1671.98303 843.4467104 1425.602356 1590.930946 1726.09225 1739.287893 1308.970096 1472.658783 915.231269 1.615901412 1.826842118 0.921566755 1.557641663 1.738282989 1.885962935 1.900380759 1.430206922 1.609056457 1 9.837992533 -9.69172296 1.450702286 0.999938394 1.615415473 0.313445682 0.270705128 8.102761514 15.56463712 0.278272466 0.080305929 2.03E-10 9.69172296 0.615477079 DSSSLSSCTSGILEERS(ph)PAFRGPDR ddPTM_K562_Paclitaxel_30min_R1 1 DSSSLSSCTSGILEERSPAFRGPDR 25 2 Q9H3Q1-2;Q9H3Q1 Q9H3Q1-2 CDC42EP4 Cdc42 effector protein 4 1 DSSSLS(0.001)S(0.002)CT(0.01)S(0.03)GILEERS(0.956)PAFRGPDR 51.175 0.013217 33059000 1165.7 1179.4 1466.3 1398.9 1094.1 1001.1 1047.2 1372.7 1462.7 1535.3 TRUE FALSE 1182.023396 1308.17088 1096.11443 1309.180815 1243.134943 1178.631029 1245.900733 1256.080567 1603.198871 1222.405017 0.966965433 1.070161577 0.896686789 1.070987763 1.016958312 0.964190274 1.019220893 1.027548602 1.311512018 1 10.25550665 -8.552150756 24.9875527 1.160347712 1.002902383 0.340811318 0.085004212 206.9522515 176657.4703 0.051999107 0.019654443 2.80E-09 8.552150756 -0.157445329 DSTAPQRVPVAS(ph)PSAHNISSSGGAPDR ddPTM_K562_Paclitaxel_30min_R1 1 DSTAPQRVPVASPSAHNISSSGGAPDR 27 1 Q7KZI7-10;Q7KZI7-13;Q7KZI7-7;Q7KZI7-2;Q7KZI7-15;Q7KZI7-5;Q7KZI7-4;Q7KZI7-16;Q7KZI7-9 Q7KZI7-10 MARK2 Serine/threonine-protein kinase MARK2 1 DS(0.007)T(0.007)APQRVPVAS(0.906)PS(0.08)AHNIS(0.001)SSGGAPDR 52.427 0.0088309 17857000 1134.2 861.07 1400.7 1176.3 933.95 946.4 816.51 1229.8 787.8 1083.5 TRUE FALSE 1150.082299 955.0845346 1047.075961 1100.857383 1061.169802 1114.230752 971.43851 1125.320814 863.47171 862.6821053 1.333147277 1.107110636 1.213744849 1.276086957 1.230082084 1.29158904 1.126067765 1.304444368 1.00091529 1 9.75268522 -8.773270924 24.99940594 1.000457387 1.229716673 0.645626887 0.069492099 147.2410837 311102.3552 0.061260519 0.016331234 1.69E-09 8.773270924 0.229259285 DSYESYGNSR ddPTM_K562_Paclitaxel_30min_R1 1 DSYESYGNSR 10 0 P38159;P38159-2;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 0 128.91 0.0071482 10444000 497.4 536.31 715.85 628.39 403.98 458.01 705.69 547.98 358.2 567.76 FALSE TRUE 504.3651346 594.8661395 535.124814 588.087878 459.0089154 539.2316427 839.5909936 501.4256786 392.6067105 452.0502003 1.115728152 1.315929379 1.183772983 1.300934891 1.015393678 1.192857878 1.857295922 1.109225653 0.868502459 1 8.820339183 -8.521096745 24.95047348 0.952455325 1.282898169 0.30075529 0.214031602 92.16783367 1290591.467 0.144096911 0.056254551 3.01E-09 8.521096745 0.330442844 DSYS(ph)SSRSDLYSSGR ddPTM_K562_Paclitaxel_30min_R1 3 DSYSSSRSDLYSSGR 15 1 P38159;P38159-2;H3BUY5 P38159 RBMX "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed" 1 DS(0.006)YS(0.939)S(0.002)S(0.009)RS(0.043)DLYSSGR;DS(0.002)YS(0.774)S(0.016)S(0.016)RS(0.016)DLYS(0.087)S(0.087)GR;DSYS(0.904)S(0.006)S(0.021)RS(0.068)DLYSSGR 172.42 4.71E-06 175244000 4791.6 4127.29 5459.3 4257.6 3179.04 3402.99 4076.3 3902.13 4148 5741.2 TRUE FALSE 4858.697183 4577.92148 4081.032195 3984.536592 3612.07907 4006.462496 4849.756645 3570.6197 4546.433934 4571.140289 1.062907038 1.001483479 0.892782093 0.871672349 0.790192127 0.876468943 1.060951172 0.781122318 0.994595144 1 12.15833838 -5.612179827 3.18751186 0.899196286 1.054832906 0.258500709 0.085355758 0.305565813 5.922343283 0.021992587 0.078039482 2.44E-06 5.612179827 0.15563662 DSYVGDEAQSKR ddPTM_K562_Paclitaxel_30min_R1 4 DSYVGDEAQSKR 12 1 P60709;P63261;A0A2R8Y793;P63267;I3L3I0;A0A2R8YGF8;P68133;C9JUM1;E7EVS6;I3L1U9;G5E9R0;P62736;P68032;C9JZR7;K7EM38;A6NL76;C9JTX5;J3KT65;I3L3R2;F6QUT6;C9JFL5;F8WB63;B8ZZJ2;F6UVQ4 P60709 ACTB;ACTG1;ACTG2;ACTA1;ACTA2;ACTC1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, aortic smooth muscle;Actin, alpha cardiac muscle 1" 0 ;;; 151.13 0.00069794 352016000 8348.1 6413.7 15612 10254.9 7592.9 5605.3 5700.3 9995.7 8967.6 11165.8 FALSE TRUE 8464.999156 7113.969456 11670.55751 9597.196613 8627.181529 6599.321253 6781.902167 9146.502894 9828.978048 8890.203831 0.952171549 0.800203189 1.312743525 1.079524924 0.970414368 0.74231383 0.762851145 1.02882938 1.105596478 1 13.11800078 -6.997239602 22.34092312 0.912399006 1.037301093 0.09011559 0.158417991 55.05524946 445545.8487 0.053327571 0.060005031 1.01E-07 6.997239602 0.124902087 DT(ph)CS(ph)PELLMSLIQT(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 DTCSPELLMSLIQTK 15 0 F5GX88;P17813-2;P17813 F5GX88 ENG Endoglin 3 DT(0.969)CS(0.961)PELLMS(0.108)LIQT(0.961)K 44.734 0.030882 0 0 0 148.56 0 0 129.76 0 0 139.89 0 TRUE FALSE 0 0 111.0541906 0 0 152.7711141 0 0 153.3270595 0 0 DT(ph)ERNDIQDLHEYHSGY(ph)VHK ddPTM_K562_Paclitaxel_30min_R1 1 DTERNDIQDLHEYHSGYVHK 20 1 Q7Z333-3;Q7Z333;Q7Z333-4;X6RI79 Q7Z333-3 SETX Probable helicase senataxin 2 DT(1)ERNDIQDLHEY(0.168)HS(0.193)GY(0.639)VHK 54.103 0.030221 20506000 0 0 0 0 139.67 0 0 0 0 0 TRUE FALSE 0 0 0 0 158.6954186 0 0 0 0 0 0 DT(ph)ILFS(ph)DPT(ph)LPSGQRS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 DTILFSDPTLPSGQRSR 17 1 A0A0U1RQD2;Q6ZUS6-6;Q6ZUS6;Q6ZUS6-5;Q6ZUS6-4 A0A0U1RQD2 CCDC149 Coiled-coil domain-containing protein 149 4 DT(1)ILFS(0.994)DPT(0.994)LPS(0.012)GQRS(1)R 83.229 0.00533 32540000 1538.4 1648.9 1963.4 2175.6 1653 2022.6 1441 2207.3 1319.2 1951.7 TRUE FALSE 1559.942346 1828.932478 1467.715387 2036.066754 1878.166586 2381.279711 1714.422227 2019.776087 1445.915054 1553.942469 1.003861068 1.1769628 0.944510763 1.310258774 1.208646152 1.532411759 1.103272651 1.299775332 0.930481716 1 10.60171738 -6.265949102 24.93336228 1.220776875 1.05529667 0.140046025 0.16972153 657.1119517 3633046.629 0.0461314 0.071071738 5.42E-07 6.265949102 -0.165480205 DT(ph)SPSSGSAVSSSK ddPTM_K562_Paclitaxel_30min_R1 2 DTSPSSGSAVSSSK 14 0 F8WF16;B7Z8L1;F8W6A0;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-9;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8;Q8NEY8-7 F8WF16 PPHLN1 Periphilin-1 1 DT(0.639)S(0.36)PS(0.001)SGSAVSSSK;DT(0.5)S(0.5)PSSGSAVSSSK 233.52 8.46E-35 199740000 11829.5 10011.9 21983 13797.8 9446.2 8667.5 8266 13050.9 9387.4 15125.4 TRUE FALSE 11995.1495 11105.0331 16433.11977 12912.87086 10732.93237 10204.55943 9834.430349 11942.14458 10289.10171 12042.83518 0.996040328 0.922127799 1.364555732 1.072245088 0.891229699 0.847355235 0.816620854 0.991638963 0.854375366 1 13.55588746 -6.736393656 5.751576237 0.892485246 1.098480835 0.372277697 0.119709475 0.187299983 18.18800247 0.037267822 0.046786609 1.83E-07 6.736393656 0.205995589 DTDSEEEIREAFR ddPTM_K562_Paclitaxel_30min_R1 1 DTDSEEEIREAFR 13 1 G3V361;A0A590UJI2;Q96HY3;P0DP25;P0DP24;P0DP23;E7EMB3;A0A590UJC0;G3V226 G3V361 CALM1;CALM2 0 116.84 0.021931 12441000 1512.8 1308.3 1644.1 1294.3 1269.5 1284.4 996.41 1225.5 839.53 1627.6 FALSE TRUE 1533.983867 1451.144618 1229.026621 1211.289391 1442.427393 1512.170306 1185.473596 1121.386126 920.1706076 1295.894227 1.183726137 1.119801747 0.948400414 0.934713163 1.113074943 1.166893312 0.914791942 0.865337697 0.710066137 1 10.33973225 -7.937300347 5.380451163 0.849223432 1.068490564 0.49975465 0.10125264 0.174677731 9.91656992 0.045914624 0.030346734 1.16E-08 7.937300347 0.219267132 DTEEQNPETVNWEDRPS(ph)TPTILGYEVMEER ddPTM_K562_Paclitaxel_30min_R1 1 DTEEQNPETVNWEDRPSTPTILGYEVMEER 30 1 E5RGS8;E5RH07;E5RGQ6;A0A0C4DGW2;P57768-2;P57768 E5RGS8 SNX16 Sorting nexin-16 1 DTEEQNPET(0.001)VNWEDRPS(0.428)T(0.428)PT(0.129)ILGY(0.014)EVMEER 90.388 5.02E-07 7674300 1847.5 1888.8 2434.1 1838.3 1576.6 1542.1 1704.2 2377.9 1734.4 2525.7 TRUE FALSE 1873.3707 2095.025572 1819.58135 1720.399666 1791.359612 1815.569783 2027.563053 2175.882553 1900.99687 2010.960954 0.931579848 1.041803207 0.904831766 0.855511224 0.890797809 0.902836915 1.008255804 1.082011338 0.945317643 1 10.97366935 -7.792919727 8.523968809 1.016049201 0.921599763 0.376880366 0.054923514 0.279489617 66.90303086 0.024564431 0.016747872 1.61E-08 7.792919727 -0.094449439 DTGKTPVEPEVAIHR ddPTM_K562_Paclitaxel_30min_R1 2 DTGKTPVEPEVAIHR 15 1 E5RIP1;E5RJX2;P60866;P60866-2 E5RIP1 RPS20 40S ribosomal protein S20 0 ; 102.52 0.0043415 16068400 5384 4204.9 8409.8 5735.5 4810.3 4175.3 3798.2 4908 4283.4 7167.4 FALSE TRUE 5459.392611 4664.005202 6286.641979 5367.650701 5465.544299 4915.730831 4518.888622 4491.034765 4694.839709 5706.679946 0.95666704 0.817288729 1.101628624 0.940590808 0.95774502 0.861399426 0.791859481 0.78697856 0.82269196 1 12.47843594 -7.344047696 3.798200142 0.832079242 0.954935638 0.253442263 0.085311212 0.295586532 8.081457652 0.030697813 0.027063638 4.53E-08 7.344047696 0.122856396 DTGNQLIVT(ph)MSCLTKEDT(ph)GWYWCGIQR ddPTM_K562_Paclitaxel_30min_R1 1 DTGNQLIVTMSCLTKEDTGWYWCGIQR 27 1 Q5QNY8;P0DMS9;P0DMS9-2 Q5QNY8 ADORA3;TMIGD3 Transmembrane domain-containing protein TMIGD3 2 DT(0.013)GNQLIVT(0.489)MS(0.489)CLT(0.128)KEDT(0.778)GWY(0.104)WCGIQR 40.669 0.030829 0 307.28 376.02 801.14 289.2 488.17 430.72 203.61 303.61 220.7 224.43 TRUE FALSE 311.582868 417.0751352 598.8822986 270.6520064 554.6670188 507.1021444 242.2439346 277.8164354 241.8992211 178.6910428 1.743696064 2.334057313 3.351495907 1.514636672 3.104056085 2.83787109 1.35565796 1.554730618 1.353728857 1 7.481323508 -7.77200713 24.82256613 1.36225648 2.498258417 0.524565812 0.542454858 164.0894738 385425.3103 0.223616242 0.15255988 1.69E-08 7.77200713 1.136001937 DTHEDHDTSTENT(ph)DESNHDPQFEPIVSLPEQEIK ddPTM_K562_Paclitaxel_30min_R1 1 DTHEDHDTSTENTDESNHDPQFEPIVSLPEQEIK 34 0 C9JJ34;P43487-2;P43487 C9JJ34 RANBP1 Ran-specific GTPase-activating protein 1 DTHEDHDT(0.064)S(0.265)T(0.265)ENT(0.307)DES(0.098)NHDPQFEPIVSLPEQEIK 80.554 2.57E-06 14820000 1393.5 1344.1 2420.8 1824.3 1536.6 1162.6 1213.4 1617.8 1213.7 2119.5 TRUE FALSE 1413.013299 1490.853383 1809.6391 1707.297563 1745.910935 1368.770786 1443.636316 1480.357792 1330.281308 1687.544737 0.837319017 0.883445251 1.072350297 1.011705068 1.03458646 0.811101926 0.855465508 0.877225806 0.788293951 1 10.72071003 -7.266443468 24.97333433 0.858059556 0.971428828 0.268156625 0.083136145 558.0928907 2785202.358 0.029910416 0.027206971 5.41E-08 7.266443468 0.113369272 DTIIDVVGAPLT(ph)PNSR ddPTM_K562_Paclitaxel_30min_R1 2 DTIIDVVGAPLTPNSR 16 0 Q9NPF5 Q9NPF5 DMAP1 DNA methyltransferase 1-associated protein 1 1 DTIIDVVGAPLT(0.999)PNS(0.001)R;DTIIDVVGAPLT(0.999)PNS(0.001)R 229.4 4.35E-39 163623000 6290.9 6301.1 8403.2 7649.2 6866.6 5780.2 6104.9 7762.2 4568.3 8658.7 TRUE FALSE 6378.992009 6989.075407 6281.708231 7158.614549 7801.947172 6805.237312 7263.272905 7102.75266 5007.105627 6894.052187 0.925289197 1.013783362 0.911177934 1.038375451 1.131692503 0.987117174 1.053556415 1.03027254 0.726293549 1 12.7511365 -8.723382396 24.9999941 0.863146134 1.01364996 0.325235487 0.085372149 154.5900062 101551.8839 0.055741664 0.021067407 1.89E-09 8.723382396 0.150503827 DTIIDVVGAPLT(ph)PNSRK ddPTM_K562_Paclitaxel_30min_R1 1 DTIIDVVGAPLTPNSRK 17 1 Q9NPF5 Q9NPF5 DMAP1 DNA methyltransferase 1-associated protein 1 1 DTIIDVVGAPLT(0.92)PNS(0.08)RK 87.654 0.0097273 4058100 1084.5 1016.5 2166.9 1624.7 977.71 959.38 1126 1423.8 891.52 2165.1 TRUE FALSE 1099.686346 1127.484908 1619.839295 1520.499014 1110.890655 1129.512573 1339.652622 1302.839303 977.1544794 1723.851432 0.637924084 0.65404993 0.939662935 0.882035996 0.644423663 0.655226171 0.777127656 0.755772382 0.56684379 1 10.75141973 -11.07367974 4.530298259 1.000016347 0.730808781 0.355348093 0.111282287 174895800.8 70868.38777 31234.80644 0.0284835 8.44E-12 11.07367974 -0.269207566 DTLQTVS(ph)SSPVTEISR ddPTM_K562_Paclitaxel_30min_R1 1 DTLQTVSSSPVTEISR 16 0 Q5T3J3 Q5T3J3 LRIF1 Ligand-dependent nuclear receptor-interacting factor 1 1 DTLQT(0.059)VS(0.844)S(0.088)S(0.009)PVTEISR 205.12 6.04E-17 49323000 3460.8 3480.4 4592.2 4068.4 3457.2 2990.8 3123.6 4119.1 3421.7 4283.6 TRUE FALSE 3509.261877 3860.401842 3432.842314 3807.471033 3928.129171 3521.176387 3716.286794 3769.156744 3750.369574 3410.599969 1.028928021 1.131883504 1.006521535 1.116364003 1.151741397 1.032421398 1.089628461 1.105130118 1.099621652 1 11.73580983 -5.210717084 21.82368695 1.084429465 1.028926631 0.089821451 0.049388021 21117.68422 9084811.048 0.011692606 7.644029623 6.16E-06 5.210717084 -0.055502834 DTLQTVSSS(ph)PVTEISR ddPTM_K562_Paclitaxel_30min_R1 1 DTLQTVSSSPVTEISR 16 0 Q5T3J3 Q5T3J3 LRIF1 Ligand-dependent nuclear receptor-interacting factor 1 1 DTLQTVS(0.019)S(0.222)S(0.757)PVT(0.002)EISR 235.02 3.52E-40 51013000 2236.9 1892.3 2787.9 2245.1 2017.7 1805.5 1726.6 2373.8 1930.3 2675.4 TRUE FALSE 2268.223501 2098.907713 2084.060165 2101.109335 2292.5449 2125.680075 2054.213337 2172.130873 2115.71394 2130.152011 1.06481767 0.985332362 0.97836218 0.986365914 1.076235352 0.997900649 0.964350584 1.019706979 0.993222046 1 11.05674067 -7.497757974 24.7403559 0.993842629 1.01487684 0.106761953 0.032947028 1806.358146 1779007.045 0.012062942 0.010598569 3.18E-08 7.497757974 0.021034211 DTPGHGSGWAET(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 DTPGHGSGWAETPR 14 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 DTPGHGS(0.001)GWAET(0.999)PR;DTPGHGS(0.003)GWAET(0.997)PR 87.157 0.019422 9299000 2414.1 2202.6 3206.2 2633.6 2197.08 2534.2 2751.9 2840.3 1891.74 3725 TRUE FALSE 2447.904848 2443.087317 2396.755156 2464.692684 2496.359493 2983.604788 3274.058659 2598.998786 2073.45008 2965.842955 0.825365633 0.823741295 0.808119375 0.831026026 0.841703196 1.005988797 1.103921788 0.876310319 0.699109869 1 11.53422649 -7.115107121 6.334822909 0.939431615 0.82300982 0.242236976 0.098603592 0.388932729 19.00993311 0.035120028 0.035227139 7.67E-08 7.115107121 -0.116421795 DTPRPDHPPHDGHSPAS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 DTPRPDHPPHDGHSPASR 18 1 Q9C0J8 Q9C0J8 WDR33 pre-mRNA 3 end processing protein WDR33 1 DTPRPDHPPHDGHS(0.178)PAS(0.822)R 67.251 0.014398 2366800 243.66 360.74 393.08 305.29 184.99 213.2 307.44 462.41 131.71 706.86 TRUE FALSE 247.0719918 400.1268131 293.8420924 285.7100658 210.1887699 251.0080265 365.7751351 423.1253842 144.361334 562.801544 0.439003756 0.710955429 0.522106052 0.507656862 0.373468716 0.445997402 0.6499185 0.751819871 0.256504865 1 9.136482476 -11.34979634 4.61754816 1.000469977 0.527476976 0.497160113 0.145264775 0.000699496 9.85E-05 0.139984911 0.033918456 4.47E-12 11.34979634 -0.472993 DTS(ph)PSSGSAVSSSK ddPTM_K562_Paclitaxel_30min_R1 2 DTSPSSGSAVSSSK 14 0 F8WF16;B7Z8L1;F8W6A0;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-9;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8;Q8NEY8-7 F8WF16 PPHLN1 Periphilin-1 1 DT(0.455)S(0.545)PSSGSAVSSSK;DT(0.076)S(0.924)PSSGSAVSSSK 225.33 4.85E-26 78026000 12035.4 9011.6 22475.1 13439.2 9901.6 9049.1 8778.8 13147.5 10265.6 14565.9 TRUE FALSE 12203.93273 9995.516963 16800.98304 12577.26986 11250.36556 10653.83083 10444.53147 12030.53781 11251.65675 11597.36158 1.052302512 0.861878531 1.448690111 1.08449407 0.970079744 0.918642637 0.900595484 1.037351274 0.970191079 1 13.50150901 -6.721400483 4.998301946 0.961832432 1.120658344 0.210693878 0.138774131 0.314822485 18.11909205 0.043266848 0.054828206 1.90E-07 6.721400483 0.158825911 DTSATSQSVNGS(ph)PQAEQPSLESTSK ddPTM_K562_Paclitaxel_30min_R1 3 DTSATSQSVNGSPQAEQPSLESTSK 25 0 C9J0I9;Q86WB0-2;Q86WB0;Q86WB0-3;F8WAU5 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 DTSATSQSVNGS(1)PQAEQPSLESTSK;DTSATSQS(0.001)VNGS(0.999)PQAEQPSLESTSK;DTSATSQSVNGS(1)PQAEQPSLESTSK 165 4.60E-26 47446000 10115.8 8948.4 19148.8 11778.2 9353.7 7731.4 7169.3 11436.6 7557.3 12648.8 TRUE FALSE 10257.45241 9925.416574 14314.44861 11022.79897 10627.8323 9102.455236 8529.637249 10464.98944 8283.212432 10070.96762 1.018517068 0.985547462 1.421357823 1.094512403 1.055294059 0.903831249 0.846953101 1.039124525 0.822484268 1 13.29791468 -7.035107508 2.710812769 0.920583352 1.139507021 0.382977406 0.124764354 0.300915164 4.419387391 0.044751995 0.047632704 9.22E-08 7.035107508 0.218923668 DTSLYRPALEELRR ddPTM_K562_Paclitaxel_30min_R1 1 DTSLYRPALEELRR 14 2 Q13200;C9JPC0;H7C2Q3 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 81.278 0.01694 12537000 675.55 760 741 879.31 505.46 501.48 990.9 1081.6 621.58 1332.8 FALSE TRUE 685.0097843 842.9793702 553.9253854 822.9149922 574.3122095 590.4104369 1178.918102 989.7113289 681.2855363 1061.174628 0.645520319 0.794383269 0.521992677 0.775475563 0.541204241 0.556374437 1.110955794 0.932656419 0.642010766 1 10.05144637 -7.746774951 24.99988073 0.91579382 0.642632131 0.496887746 0.139063498 207.6291932 353965.9423 0.053215512 0.041038582 1.79E-08 7.746774951 -0.273161689 DTYSDRS(ph)GSSS(ph)PDSEITELKFPSINHD ddPTM_K562_Paclitaxel_30min_R1 1 DTYSDRSGSSSPDSEITELKFPSINHD 27 2 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 2 DT(0.004)Y(0.015)S(0.068)DRS(0.574)GS(0.209)S(0.298)S(0.696)PDS(0.134)EIT(0.002)ELKFPSINHD 86.073 1.13E-05 38655000 1122.4 707.27 1621.9 1140.6 689.21 758.08 868.3 1215.8 1207.8 1147.3 TRUE FALSE 1138.117063 784.4921304 1212.431286 1067.447021 783.0920704 892.514844 1033.055392 1112.510201 1323.814587 913.4796302 1.245914003 0.858795428 1.327266909 1.168550437 0.857262762 0.977049531 1.130901399 1.217881783 1.449199898 1 9.835228748 -8.189146388 3.431990969 1.252933475 1.068737488 0.118761549 0.175930836 0.450603777 10.32677932 0.094525611 0.048857236 6.47E-09 8.189146388 -0.184195987 DVCT(ph)NIAR ddPTM_K562_Paclitaxel_30min_R1 1 DVCTNIAR 8 0 Q8NEN0-2;Q8NEN0 Q8NEN0-2 ARMC2 Armadillo repeat-containing protein 2 1 DVCT(1)NIAR 57.55 0.02826 55332000 261.1 264.41 338.75 325.46 361.78 293.88 192.49 209.29 182.57 489.27 TRUE FALSE 264.7562056 293.279178 253.2283729 304.5864523 411.060561 345.9954917 229.0139726 191.5095082 200.1066642 389.5565054 0.679634923 0.752854012 0.650042726 0.78188003 1.055201377 0.888177933 0.587883836 0.491609062 0.513678148 1 8.605688797 -7.773806458 24.98689049 0.60592679 0.802879598 0.144677988 0.170185669 355.2868175 717827.337 0.0725269 0.049288242 1.68E-08 7.773806458 0.196952808 DVDDGS(ph)GSPHSPHQLSSK ddPTM_K562_Paclitaxel_30min_R1 1 DVDDGSGSPHSPHQLSSK 18 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 DVDDGS(0.779)GS(0.183)PHS(0.038)PHQLSSK 62.589 0.027619 23776000 1036.7 936.76 2087.8 1308 1035.7 758.89 911.38 1167 1096.7 1264.1 TRUE FALSE 1051.216998 1039.038625 1560.709068 1224.110734 1176.779875 893.4684862 1084.309597 1067.856066 1202.042935 1006.475726 1.044453404 1.032353387 1.550667371 1.216234731 1.169208401 0.887719855 1.077333083 1.060985415 1.194308918 1 9.975096663 -7.017356594 22.47673048 1.047571553 1.218724506 0.220653851 0.15023649 321.8881485 416844.8792 0.051432447 0.052713181 9.61E-08 7.017356594 0.171152953 DVDDGSGS(ph)PHS(ph)PHQLSSK ddPTM_K562_Paclitaxel_30min_R1 1 DVDDGSGSPHSPHQLSSK 18 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 2 DVDDGS(0.051)GS(0.952)PHS(0.995)PHQLS(0.001)SK 95.361 0.0033466 20812000 3629.9 2799.4 6842.8 3992 2668.7 2861.7 2627.5 3629 3603.9 4116.9 TRUE FALSE 3680.729799 3105.047959 5115.250509 3735.970988 3032.222121 3369.182315 3126.054409 3320.693798 3950.070698 3277.87352 1.122901716 0.947275098 1.560539319 1.139754467 0.925057695 1.027856107 0.953683658 1.013063432 1.205071115 1 11.67854447 -6.532659975 22.75895951 1.019709473 1.211643025 0.231419692 0.157375459 102.1159714 237599.8622 0.047179389 0.0610211 2.93E-07 6.532659975 0.191933552 DVDDGSGSPHS(ph)PHQLSSK ddPTM_K562_Paclitaxel_30min_R1 1 DVDDGSGSPHSPHQLSSK 18 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 DVDDGSGS(0.012)PHS(0.988)PHQLSSK 94.632 0.0011032 23506000 2031.1 1618.4 3516.9 2348.9 1509.7 1695.7 1552.8 2162.4 1997.6 2892.8 TRUE FALSE 2059.541666 1795.102385 2629.015099 2198.252067 1715.346699 1996.408586 1847.435694 1978.690623 2189.478406 2303.245772 0.894191011 0.779379434 1.141439238 0.954414893 0.744751915 0.866780528 0.802100981 0.859087921 0.950605633 1 11.16945265 -3.778711377 11.64518779 0.892394403 0.980075805 0 0.1119507 0 0 0.026270008 0 0.000166452 3.778711377 0.087681402 DVDELPSLQPSVGS(ph)PSRPSSSR ddPTM_K562_Paclitaxel_30min_R1 3 DVDELPSLQPSVGSPSRPSSSR 22 1 O43815-2;O43815 O43815-2 STRN Striatin 1 DVDELPSLQPS(0.232)VGS(0.685)PS(0.082)RPSSSR;DVDELPSLQPS(0.296)VGS(0.607)PS(0.09)RPS(0.003)S(0.003)S(0.003)R;DVDELPSLQPS(0.059)VGS(0.893)PS(0.037)RPS(0.004)S(0.004)S(0.004)R 113.65 1.61E-05 86737000 2984.77 2192.65 3787.36 2876.39 3111.24 2847.96 2622.32 3301.83 1578.52 4359.23 TRUE FALSE 3026.565989 2432.050942 2831.194127 2691.91122 3535.043562 3353.005719 3119.891531 3021.318932 1730.143899 3470.816533 0.872004026 0.700714347 0.815714141 0.775584418 1.018504876 0.966056744 0.898892667 0.870492261 0.498483248 1 11.76105939 -4.920928354 20.40442142 0.839743878 2.196904491 0.004576226 0.147823677 4288.035832 1608250.856 0.036057648 121026.1912 1.20E-05 4.920928354 1.357160613 DVDELPSLQPSVGSPS(ph)RPSSSR ddPTM_K562_Paclitaxel_30min_R1 1 DVDELPSLQPSVGSPSRPSSSR 22 1 O43815-2;O43815 O43815-2 STRN Striatin 1 DVDELPSLQPSVGS(0.005)PS(0.993)RPS(0.001)S(0.001)SR 192.72 3.98E-24 44359000 1386.4 1472.8 1894.8 1402.1 1381.4 1192.3 1414.7 1701.8 905.34 2031.6 TRUE FALSE 1405.813877 1633.605285 1416.434305 1312.175582 1569.570067 1403.737664 1683.13194 1557.221468 992.3019522 1617.558805 0.869095994 1.009920183 0.875661708 0.811207344 0.970332616 0.867812447 1.040538331 0.96269852 0.613456493 1 10.65960245 DVDVS(ph)EDSPPPLPERTPESFVLASEHNTPVR ddPTM_K562_Paclitaxel_30min_R1 1 DVDVSEDSPPPLPERTPESFVLASEHNTPVR 31 1 Q05209-2;Q05209-3;Q05209 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 DVDVS(0.512)EDS(0.486)PPPLPERT(0.001)PES(0.001)FVLASEHNTPVR 69.952 0.00010703 13599000 142.75 256.19 253.41 185.91 175.25 237.14 196.27 165.29 155.52 343.38 TRUE FALSE 144.7489404 284.1616906 189.4335114 173.9865647 199.122017 279.1934494 233.5112079 151.2475828 170.4583909 273.3989675 0.529442162 1.039366363 0.692883053 0.636383401 0.728320296 1.021194235 0.854104205 0.553211975 0.623478547 1 8.094863984 -5.016499245 17.92200746 0.779463575 0.40293831 0.176020754 0.169202714 27109712.85 1287818251 0.043250256 147752747.1 9.63E-06 5.016499245 -0.376525265 DVESYIHR ddPTM_K562_Paclitaxel_30min_R1 2 DVESYIHR 8 0 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 ; 160.63 1.34E-07 10104300 6655.2 7258.2 9810.9 8671.9 7355.6 6799.8 6979.6 8949.2 5226.2 10431 FALSE TRUE 6748.393333 8050.674822 7334.016955 8115.723148 8357.557251 8005.649056 8303.942664 8188.909601 5728.199861 8305.156474 0.812554628 0.969358596 0.883067884 0.977190878 1.006309427 0.963937173 0.999853849 0.986003048 0.689716067 1 13.01979163 -2.076669991 18.61450073 0.934713764 0.00465885 0 0.098860838 0 0 0.02187017 0 0.008381659 2.076669991 -0.930054914 DVHTLLDR ddPTM_K562_Paclitaxel_30min_R1 1 DVHTLLDR 8 0 E9PI41;Q9NPD3 E9PI41 EXOSC4 Exosome complex component RRP41 0 158.07 2.83E-07 5204000 3062.5 2984.2 3848.1 3633.1 3070.9 2822.5 3286.8 3306.7 3013.7 3861.7 FALSE TRUE 3105.384449 3310.025048 2876.599562 3400.089227 3489.208571 3323.030745 3910.453142 3025.775195 3303.179351 3074.68342 1.009985102 1.076541743 0.935575853 1.105833923 1.134818807 1.080771673 1.271823016 0.984093249 1.074315271 1 11.58622216 -6.30598502 24.64181007 1.101103136 1.014284934 0.184859839 0.080893784 596.3039466 329862.7713 0.022549274 0.033446194 4.94E-07 6.30598502 -0.086818201 DVNQQEFVR ddPTM_K562_Paclitaxel_30min_R1 1 DVNQQEFVR 9 0 M0R2L9;M0QYF7;M0R140;P39019 M0R2L9 RPS19 40S ribosomal protein S19 0 117.01 0.023892 24547000 1136.6 1022.6 1333.4 1120.6 1164.4 1162.9 845.45 1164.7 945.52 1379.7 FALSE TRUE 1152.515907 1134.250926 996.7666787 1048.729732 1323.010993 1369.123987 1005.869724 1065.751465 1036.341421 1098.516383 1.049156776 1.032529823 0.907375342 0.954678281 1.204361641 1.246339161 0.915662015 0.970173483 0.94340097 1 10.10134067 DVPDPQEGVGMET(ph)CPPQTTAR ddPTM_K562_Paclitaxel_30min_R1 1 DVPDPQEGVGMETCPPQTTAR 21 0 B1AL46 B1AL46 NUTM2E NUT family member 2E 1 DVPDPQEGVGMET(0.765)CPPQT(0.117)T(0.117)AR 60.334 0.025263 6120800 751 676.83 617.02 525.08 572.3 842.42 592.17 667.42 623.89 853.8 TRUE FALSE 761.516317 750.7285883 461.2456698 491.403719 650.2569491 991.8113588 704.5311662 610.7185051 683.8174221 679.7950913 1.120214498 1.104345409 0.678506914 0.722870355 0.956548462 1.458985761 1.036387546 0.898386165 1.005916975 1 9.408956134 -7.013289674 24.98818064 1.086074287 0.896255149 0.158662264 0.190139022 1219.037358 2292121.082 0.066978823 0.069983065 9.70E-08 7.013289674 -0.189819138 DVPPDILLDS(ph)PER ddPTM_K562_Paclitaxel_30min_R1 5 DVPPDILLDSPER 13 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 DVPPDILLDS(1)PER;DVPPDILLDS(1)PER;DVPPDILLDS(1)PER;DVPPDILLDS(1)PER;DVPPDILLDS(1)PER 184.48 1.82E-41 41386700 4517.12 4185.24 6042.85 5193.75 4204.89 4093.31 4163.8 5474.99 4411.87 5563.62 TRUE FALSE 4580.373617 4642.198657 4517.25778 4860.646121 4777.667207 4819.201056 4953.859314 5009.855426 4835.649826 4429.75119 1.034002457 1.047959232 1.01975429 1.097272942 1.078540758 1.087916871 1.118315477 1.130956393 1.091630121 1 12.11300995 -6.268472896 24.29132665 1.092901135 1.035310716 0.324934333 0.033734557 365.9324292 1263802.973 0.009127223 0.013858087 5.39E-07 6.268472896 -0.057590419 DVSGFSDPYCLLGIEQGVGVPGGS(ph)PGSR ddPTM_K562_Paclitaxel_30min_R1 3 DVSGFSDPYCLLGIEQGVGVPGGSPGSR 28 0 K7EIH3;K7EQ37;K7EN81;Q70J99-2;Q70J99;Q70J99-3 K7EIH3 UNC13D Protein unc-13 homolog D 1 DVSGFSDPYCLLGIEQGVGVPGGS(0.594)PGS(0.406)R;DVSGFSDPYCLLGIEQGVGVPGGS(0.815)PGS(0.185)R;DVSGFSDPYCLLGIEQGVGVPGGS(0.6)PGS(0.4)R 146.65 1.45E-31 238844000 9297 8914.8 10048.8 9013.1 7259.5 8214.1 8679.1 10857.3 8466.3 13112.4 TRUE FALSE 9427.186684 9888.148012 7511.856158 8435.040107 8248.366804 9670.755303 10325.91392 9934.904596 9279.525943 10440.08568 0.902979819 0.947132841 0.719520547 0.807947402 0.790066965 0.926309955 0.989064097 0.951611404 0.888836186 1 13.34984593 -7.403401829 5.163485921 0.953850123 0.832564527 0.462063391 0.06401961 0.231668469 8.859398373 0.024639014 0.021518314 3.95E-08 7.403401829 -0.121285596 DVSGFSDPYCLLGIEQGVGVPGGSPGS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 DVSGFSDPYCLLGIEQGVGVPGGSPGSR 28 0 K7EIH3;K7EQ37;K7EN81;Q70J99-2;Q70J99;Q70J99-3 K7EIH3 UNC13D Protein unc-13 homolog D 1 DVSGFSDPYCLLGIEQGVGVPGGS(0.252)PGS(0.748)R 141.78 2.46E-24 41520000 2834.7 3006.9 3401.5 2844.6 2840.6 2774.7 3228 4447.6 3101.9 4658.1 TRUE FALSE 2874.394546 3335.203511 2542.749256 2662.160088 3227.537812 3266.754086 3840.496149 4069.748619 3399.851355 3708.776663 0.775024976 0.899273214 0.685603229 0.717800054 0.870243238 0.880817149 1.035515615 1.097329116 0.916704257 1 11.85672768 -7.419112786 1.828108627 1.019923389 0.778201333 0.683002559 0.07169171 0.205564897 1.364805405 0.032529106 0.026554039 3.81E-08 7.419112786 -0.241722056 DVSGPMPDSYS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 DVSGPMPDSYSPR 13 0 A0A140T936;P26640;A0A140T954 A0A140T936 VARS Valine--tRNA ligase 1 DVSGPMPDS(0.318)Y(0.012)S(0.67)PR 102.9 0.0071974 5101300 634.83 485.36 596.19 653.01 410.64 541.17 305.93 671.27 638.7 613.17 TRUE FALSE 643.7195786 538.3532462 445.6744609 611.1288614 466.5761202 637.1389011 363.9786204 614.2414236 700.0499888 488.2056174 1.318541933 1.102718254 0.912882697 1.251785804 0.955695927 1.305062618 0.745543696 1.258161319 1.433924486 1 8.931345085 -8.445641423 25 1.260045668 1.08244794 0.097525062 0.197627023 212.3288373 68725.03313 0.101474392 0.048746682 3.58E-09 8.445641423 -0.177597728 DVT(ph)PPPETEVVLIK ddPTM_K562_Paclitaxel_30min_R1 1 DVTPPPETEVVLIK 14 0 E7EVA0;P27816;P27816-2;P27816-6 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 DVT(0.998)PPPET(0.002)EVVLIK 107.46 0.0003848 0 853.2 742.23 1713.7 957.47 958.04 875.33 661.47 951.88 653.09 1335.5 TRUE FALSE 865.1474323 823.2691815 1281.05524 896.0621597 1088.541268 1030.557485 786.9804794 871.0118526 715.8222126 1063.324367 0.813625136 0.774240869 1.204764303 0.842698792 1.023715154 0.969184491 0.740113275 0.819140311 0.67319271 1 10.05436604 -7.755281838 24.84762348 0.793039928 0.94227753 0.170885791 0.138433152 217.7936518 878870.5277 0.053034463 0.04000913 1.76E-08 7.755281838 0.149237602 DVTNFTVGGFAPMS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 6 DVTNFTVGGFAPMSPR 16 0 O00267-2;O00267 O00267-2 SUPT5H Transcription elongation factor SPT5 1 DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR;DVTNFTVGGFAPMS(1)PR 235.24 2.95E-40 831387000 10548.2 9656.4 11810.8 10787.5 7607.38 7588.92 9305.64 10586.6 11272 11906.9 TRUE FALSE 10695.90734 10710.71841 8829.017466 10095.63803 8643.63395 8934.708408 11071.33661 9687.202251 12354.72596 9480.267244 1.128228463 1.129790768 0.931304703 1.064910701 0.911750031 0.942453222 1.16782959 1.021827972 1.303204398 1 13.21071201 -7.77173969 24.99061856 1.12503449 1.016503171 0.192418805 0.105468705 359.3100134 871749.668 0.043661517 0.029803228 1.69E-08 7.77173969 -0.108531319 DVTNNVHYENYR ddPTM_K562_Paclitaxel_30min_R1 1 DVTNNVHYENYR 12 0 G3V1Q4;E7ES33;E7EPK1;Q16181-2;Q16181 G3V1Q4 7-Sep Septin-7 0 107.39 0.01416 6180000 1574.9 1422.1 1897.4 1677.6 1094.1 1570.2 1278.4 1580.3 1085.1 2200.5 FALSE TRUE 1596.953459 1577.369687 1418.377903 1570.006245 1243.134943 1848.652923 1520.969726 1446.043651 1189.328703 1752.036892 0.911483923 0.900306206 0.809559382 0.896103416 0.709536967 1.055144975 0.868115125 0.825350001 0.67882629 1 10.77481744 -11.14474219 4.995436751 1.000007811 0.85374691 0.163796108 0.101101772 8.67E-06 1.48E-06 0.096504963 0.023404642 7.17E-12 11.14474219 -0.146260901 DVVLST(ph)SPK ddPTM_K562_Paclitaxel_30min_R1 1 DVVLSTSPK 9 0 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 DVVLS(0.011)T(0.59)S(0.399)PK 104.22 0.021891 6354100 3973.8 3114.5 7012.9 5035 3263.9 3100.5 2613.4 4283.3 3537 5569.8 TRUE FALSE 4029.44546 3454.551643 5242.406661 4712.077636 3708.498438 3650.330142 3109.279007 3919.406929 3876.744654 4434.671703 0.90862317 0.778987008 1.182140869 1.062553883 0.836250953 0.823134245 0.701129467 0.88380994 0.874189774 1 12.11461159 -6.782826793 24.47941161 0.838180771 0.98271732 0.216763197 0.119044924 278.797029 319101.0901 0.038830028 0.044074466 1.65E-07 6.782826793 0.144536549 DVVLSTS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 DVVLSTSPK 9 0 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 DVVLS(0.002)T(0.013)S(0.985)PK 132.32 0.00069308 12590000 5638.9 3952.9 9509.2 6040.7 4076.6 3678 3721.8 5344.4 3879.2 6422 TRUE FALSE 5717.861997 4384.49099 7108.484852 5653.276539 4631.901937 4330.241658 4427.992121 4890.359861 4251.814493 5113.192875 1.118256662 0.857485938 1.390224274 1.105625522 0.90587272 0.84687626 0.865993564 0.956419987 0.831538062 1 12.32000873 -6.760373324 5.952878065 0.893596295 1.119999354 0.407276912 0.128085507 0.158629544 20.51095567 0.039249085 0.047779338 1.74E-07 6.760373324 0.226403059 DVYLS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 DVYLSPR 7 0 P38159;P38159-2;H3BUY5;H0Y6E7;H3BT71;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 DVYLS(1)PR 109.48 0.0054389 1419100000 5897.3 5825.6 8261.5 6958.5 5268.8 5110.9 5562.4 6698.1 4232.8 6724.1 TRUE FALSE 5979.880395 6461.658709 6175.782148 6512.212955 5986.499762 6017.246354 6617.836362 6129.054597 4639.379353 5353.724729 1.116957015 1.206946385 1.15354869 1.216389203 1.118193419 1.123936448 1.23611816 1.144820645 0.866570395 1 12.38632725 -8.706557219 7.279215507 0.934196308 1.167652676 0.773930907 0.050026486 0.080858638 8.792633958 0.032927154 0.012054282 1.97E-09 8.706557219 0.233456368 DWDDDQND ddPTM_K562_Paclitaxel_30min_R1 1 DWDDDQND 8 0 P50990-2;P50990;P50990-3;H7C2U0 P50990-2 CCT8 T-complex protein 1 subunit theta 0 101.99 0.0048144 8129600 2724.7 2623.8 3649.8 3029.7 2505.8 2449.4 2065.1 3186.5 2387.9 3434.9 FALSE TRUE 2762.854206 2910.275357 2728.36285 2835.388602 2847.132384 2883.766699 2456.941944 2915.786935 2617.268464 2734.865495 1.010234036 1.064138387 0.997622316 1.036756143 1.041050241 1.054445531 0.898377617 1.066153689 0.957000799 1 11.41725417 DWEDDS(ph)DEDMSNFDR ddPTM_K562_Paclitaxel_30min_R1 4 DWEDDSDEDMSNFDR 15 0 B4DDC6;A0A087WYT3;Q15185-2;Q15185-4;Q15185 B4DDC6 PTGES3 Prostaglandin E synthase 3 1 DWEDDS(0.995)DEDMS(0.005)NFDR;DWEDDS(0.998)DEDMS(0.002)NFDR;DWEDDS(1)DEDMSNFDR;DWEDDS(1)DEDMSNFDR 290.37 3.38E-148 552129000 6264 5857.5 8509.9 6827.3 5864.8 5221.62 6491 9628.4 3956.82 11629 TRUE FALSE 6351.715326 6497.041659 6361.470496 6389.427536 6663.685052 6147.600992 7722.633365 8810.407321 4336.890241 9259.003417 0.68600421 0.701699888 0.687057798 0.690077241 0.719697872 0.663959253 0.83406745 0.951550283 0.468397088 1 13.1766412 -7.762736526 24.9999721 0.809466242 0.692910067 0.169294517 0.132343247 65.89779971 1270001.183 0.050408766 0.03610322 1.73E-08 7.762736526 -0.116556175 DYAFIHFDER ddPTM_K562_Paclitaxel_30min_R1 1 DYAFIHFDER 10 0 B7Z645;O60506-5;O60506-4;O60506-3;O60506-2;O60506 B7Z645 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 92.866 0.01582 0 6076.7 5161.4 6472.7 6273.1 6019.7 5860 5365.6 6416.8 3698.1 6218 FALSE TRUE 6161.792548 5724.939107 4838.586832 5870.771443 6839.685054 6899.188722 6383.69459 5871.652788 4053.319029 4950.768187 1.244613425 1.156373898 0.977340616 1.185830405 1.381540156 1.393559234 1.289435164 1.186008427 0.818725272 1 12.27343668 -8.682035527 6.099363261 0.911962969 1.229918947 0.533296004 0.119155807 0.167532031 9.746085866 0.09584643 0.034535217 2.08E-09 8.682035527 0.317955978 DYAFVHFEDR ddPTM_K562_Paclitaxel_30min_R1 2 DYAFVHFEDR 10 0 B4DT28;O43390-4;O43390-3;O43390;O43390-2;A0A286YEZ8 B4DT28 HNRNPR Heterogeneous nuclear ribonucleoprotein R 0 ; 127.51 0.0027544 38125000 12265.4 11817 14501.2 12504.2 10994.9 10426.3 11264.6 13185.1 8976.2 14558.1 FALSE TRUE 12437.15344 13107.22002 10840.19271 11702.23658 12492.59153 12275.25791 13401.99904 12064.94346 9838.404117 11591.15123 1.072986902 1.13079536 0.935212775 1.009583634 1.077769695 1.059019736 1.156226744 1.040875338 0.848785761 1 13.50073624 -8.634071241 7.293681647 0.926146512 1.061801505 0.403064915 0.066564101 0.22184062 13.20818515 0.046698328 0.017328523 2.32E-09 8.634071241 0.135654992 DYASHLS(ph)PGSIIQPQR ddPTM_K562_Paclitaxel_30min_R1 1 DYASHLSPGSIIQPQR 16 0 C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;Q9Y618;C9JQE8;C9J330 C9JE98 NCOR2 Nuclear receptor corepressor 2 1 DYASHLS(0.998)PGS(0.002)IIQPQR 102.84 0.001903 10288000 748.14 783.42 829.97 817.11 652.23 598.52 673.33 574.44 505.27 840.12 TRUE FALSE 758.6162682 868.956445 620.4338086 764.7042218 741.0747683 704.6591184 801.0908525 525.6377365 553.8034411 668.9030828 1.134119856 1.299076753 0.927539167 1.143221255 1.107895579 1.053454733 1.197618718 0.785820472 0.827927775 1 9.385653384 -8.262526662 24.99826266 0.855155583 1.119998682 0.553352775 0.1034294 68.85815366 1583101.123 0.051599831 0.026998207 5.46E-09 8.262526662 0.264843099 DYDDMS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 DYDDMSPR 8 0 Q5T6W2;P61978-3;P61978;P61978-2 Q5T6W2 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR;DYDDMS(1)PR 128.6 0.00089465 2220905000 16363.7 15565.6 22669.1 17348.4 15120.4 14362.6 13769.8 17972.2 15974.8 19685.3 TRUE FALSE 16592.84229 17265.10485 16946.00534 16235.75127 17180.05447 16909.60545 16382.54767 16445.34943 17509.25092 15673.42505 1.058660901 1.101552774 1.081193503 1.035877686 1.096126367 1.078871108 1.045243628 1.049250523 1.117129846 1 13.93603286 -11.93399946 2.435229955 0.94962714 1.072936312 0.436351014 0.025135997 6845315.561 3843635.073 1962803.896 0.006202904 1.16E-12 11.93399946 0.123309172 DYDDMSPR ddPTM_K562_Paclitaxel_30min_R1 2 DYDDMSPR 8 0 Q5T6W2;P61978-3;P61978;P61978-2 Q5T6W2 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 ; 166.68 1.52E-08 41458000 4998.6 5832.7 8367 6314 5531.6 5085.8 4697.3 6234.2 5503.2 6939.8 FALSE TRUE 5068.595822 6469.533911 6254.647368 5909.0483 6285.097571 5987.695222 5588.588153 5704.565797 6031.806949 5525.464951 0.917315713 1.170857832 1.131967613 1.069421009 1.137478498 1.083654548 1.011424053 1.032413715 1.091637899 1 12.43188015 -7.643597426 6.543847068 1.036859097 1.093587768 0.113825259 0.067874709 0.446680304 23.83098245 0.025439849 0.019582239 2.27E-08 7.643597426 0.056728671 DYEIESQNPLAS(ph)PTNTLLGSAK ddPTM_K562_Paclitaxel_30min_R1 2 DYEIESQNPLASPTNTLLGSAK 22 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 DYEIESQNPLAS(0.876)PT(0.124)NTLLGSAK;DYEIES(0.004)QNPLAS(0.598)PT(0.351)NT(0.045)LLGS(0.001)AK 123.62 1.35E-07 61117000 7467.8 6430.4 13884.3 8000.7 6159.1 5128.8 5104.9 8644 6290.8 10764 TRUE FALSE 7572.37224 7132.492818 10379.03675 7487.570912 6998.073694 6038.320668 6073.528126 7909.638246 6895.059448 8570.290892 0.883560702 0.832234624 1.211048362 0.873665901 0.816550311 0.704564261 0.708672343 0.922913626 0.804530387 1 13.06512846 -6.513490705 24.05383188 0.813548107 0.974789985 0.22082204 0.12415905 382.7623065 980706.2513 0.036367746 0.049775875 3.07E-07 6.513490705 0.161241878 DYEPPS(ph)PSPAPGAPPPPPQR ddPTM_K562_Paclitaxel_30min_R1 2 DYEPPSPSPAPGAPPPPPQR 20 0 A8MQ02;J3KN01;P55196;P55196-5;P55196-1;H0Y8L4 A8MQ02 MLLT4 Afadin 1 DYEPPS(0.875)PS(0.125)PAPGAPPPPPQR;DY(0.009)EPPS(0.968)PS(0.022)PAPGAPPPPPQR 140.3 2.30E-13 20971300 2445 2042.49 2236.3 2057.97 1548.58 1778.5 1738.43 2675.3 2356.2 3015 TRUE FALSE 2479.237543 2265.495965 1671.718407 1925.981015 1759.522814 2093.892004 2068.288017 2448.016566 2582.523538 2400.541345 1.032782688 0.943743781 0.696392258 0.80231112 0.732969177 0.872258255 0.861592333 1.019776881 1.075808814 1 11.22914407 -8.254214353 3.234856029 1.042819554 0.838696216 0.451098652 0.092476878 0.242386382 5.257254178 0.058568871 0.027773009 5.57E-09 8.254214353 -0.204123337 DYGHSSSRDDYPSR ddPTM_K562_Paclitaxel_30min_R1 2 DYGHSSSRDDYPSR 14 1 P38159;P38159-2;H3BUY5;H0Y6E7;H3BT71;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 0 ; 126.32 0.00039501 80237000 5509.5 4883.8 6736.2 6139.4 5623 4988.6 4660.6 6097.7 5062.3 6392.2 FALSE TRUE 5586.649998 5417.0298 5035.562998 5745.646363 6388.947798 5873.258167 5544.92452 5579.662324 5548.556534 5089.466131 1.097688806 1.064361106 0.989408883 1.128929089 1.255327697 1.1540028 1.089490406 1.096315838 1.090204039 1 12.31329861 -6.302113338 23.74090532 1.126581131 1.051873731 0.162377677 0.065671714 442.5666426 258319.6448 0.01928309 0.028601895 4.99E-07 6.302113338 -0.0747074 DYLHYIR ddPTM_K562_Paclitaxel_30min_R1 2 DYLHYIR 7 0 M0R1H5;M0QZC5;P62280 M0R1H5 RPS11 40S ribosomal protein S11 0 ; 128.48 0.00098085 97863000 12701.9 13421.6 14152.8 12280.6 10149.4 10997.2 14101.7 16789.6 14094.7 19430 FALSE TRUE 12879.76579 14887.01568 10579.7506 11492.97728 11531.92011 12947.39901 16777.42396 15363.21868 15448.55891 15470.15533 0.832555686 0.962305507 0.683881343 0.742912856 0.745430143 0.836927538 1.084502618 0.993087551 0.998603994 1 13.91720006 -7.654168357 5.49448323 1.017529743 0.793953369 0.685231665 0.072866089 0.131596808 5.886522334 0.030489001 0.023315114 2.22E-08 7.654168357 -0.223576374 DYLLCDYNRDGDSYR ddPTM_K562_Paclitaxel_30min_R1 2 DYLLCDYNRDGDSYR 15 1 B1AK87;B1AK85;P47756-2;P47756;A0A6I8PRV6;B1AK88 B1AK87 CAPZB F-actin-capping protein subunit beta 0 ; 144.51 3.61E-05 137798000 5090.4 5073.1 7040.9 5549.6 4760.5 5092 5102.4 6376.3 4560.7 7645.9 FALSE TRUE 5161.681305 5626.998214 5263.337714 5193.673495 5408.960696 5994.994705 6070.553764 5834.593515 4998.775613 6087.661383 0.847892315 0.924328385 0.864591077 0.853147567 0.888512083 0.984777951 0.997189788 0.958429378 0.821132336 1 12.5716724 -7.135531704 5.769052996 0.952225796 0.875180315 0.359595566 0.051363028 0.281852425 12.09745127 0.017396041 0.017443284 7.32E-08 7.135531704 -0.077045481 DYSDHPS(ph)GGSYR ddPTM_K562_Paclitaxel_30min_R1 1 DYSDHPSGGSYR 12 0 P38159;P38159-2;H3BUY5;H0Y6E7;H3BT71;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 DYSDHPS(0.934)GGS(0.066)YR 86.262 0.023373 3849000 2201.7 1618.8 2277.7 1685.1 1867.6 1486.4 1632.7 2015.4 1271.9 2303.3 TRUE FALSE 2232.530593 1795.546058 1702.666465 1577.025228 2121.998739 1749.99217 1942.496302 1844.17919 1394.071678 1833.886196 1.217376846 0.979093502 0.928447179 0.859936256 1.157104919 0.954253418 1.059224016 1.005612668 0.760173495 1 10.8406884 -5.262533888 5.964908894 0.970676076 1.224056694 0.352859852 0.101640394 0.149281038 25.49971221 0.025101085 0.15416469 5.46E-06 5.262533888 0.253380618 DYSDHPS(ph)GGSYRDSYESYGNSR ddPTM_K562_Paclitaxel_30min_R1 1 DYSDHPSGGSYRDSYESYGNSR 22 1 P38159;P38159-2;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 DY(0.001)S(0.002)DHPS(0.838)GGS(0.108)Y(0.025)RDS(0.014)Y(0.012)ES(0.001)Y(0.001)GNSR 58.564 0.015976 17044000 1776.1 1414.5 2459.8 1798.6 1563 1894.1 1620.5 1729.3 1686.7 2273.9 TRUE FALSE 1800.97088 1568.939894 1838.793068 1683.245846 1775.907062 2229.992041 1927.981415 1582.385171 1848.715071 1810.477932 0.994748872 0.866588797 1.015639592 0.929724586 0.980905114 1.231714566 1.064901914 0.874015167 1.021119915 1 10.82215488 -5.797836288 23.42986937 1.015547393 0.9306689 0.115906377 0.09286895 177.6873251 114382.4161 0.026135535 0.054409885 1.59E-06 5.797836288 -0.084878493 DYSDHPSGGSYRDS(ph)YESYGNSR ddPTM_K562_Paclitaxel_30min_R1 2 DYSDHPSGGSYRDSYESYGNSR 22 1 P38159;P38159-2;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 DYSDHPSGGSYRDS(0.521)Y(0.398)ES(0.063)Y(0.017)GNSR;DYSDHPS(0.006)GGS(0.024)Y(0.019)RDS(0.665)Y(0.135)ES(0.126)Y(0.024)GNSR 101.05 0.0001995 83855000 2968.7 2948.8 3966.1 3661 2801.5 2460.1 2877.1 3134 3115.5 3336 TRUE FALSE 3010.270959 3270.759956 2964.809003 3426.199846 3183.11173 2896.364193 3423.014706 2867.747138 3414.757695 2656.121369 1.133333361 1.231404557 1.116217443 1.289925937 1.198405979 1.090448738 1.288726767 1.079674736 1.285618095 1 11.37510536 -11.04508173 6.36082461 0.99999984 1.189296206 0.346933114 0.078362504 1.62E-07 2.43E-08 0.069167834 0.016775649 9.01E-12 11.04508173 0.189296365 DYTGCSTSESLS(ph)PVK ddPTM_K562_Paclitaxel_30min_R1 1 DYTGCSTSESLSPVK 15 0 O95297-4;O95297-2;O95297 O95297-4 MPZL1 Myelin protein zero-like protein 1 1 DYTGCSTSES(0.117)LS(0.883)PVK 169.25 1.24E-05 10050000 824.1 628.29 1747.7 830.9 608.05 574.48 734.59 981.49 431.86 1075.9 TRUE FALSE 835.6399426 696.8888269 1306.47152 777.609793 690.8767044 676.3559619 873.9746177 898.1062982 473.3420826 856.6309894 0.975495812 0.813522783 1.525127547 0.907753516 0.806504449 0.78955346 1.020246324 1.048416774 0.552562408 1 9.742530059 -6.492786521 24.96514749 0.873832837 1.099070178 0.195253351 0.214713355 1154.404662 957718.5246 0.060322855 0.08932886 3.22E-07 6.492786521 0.225237341 DYTYEELLNR ddPTM_K562_Paclitaxel_30min_R1 1 DYTYEELLNR 10 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 0 119.75 0.019231 23615000 1338.3 1180 1625.2 1359.6 1240.5 1312.5 1270.7 1535.9 960.59 1643 FALSE TRUE 1357.040329 1308.836391 1214.89816 1272.401341 1409.477102 1545.253447 1511.808692 1405.415708 1052.858962 1308.155698 1.037369123 1.000520345 0.928710674 0.972668118 1.077453627 1.181245817 1.155679476 1.074348956 0.804842239 1 10.35331855 -4.915350339 13.32655968 1.029835484 1.138429459 0 0.104343934 6868216.244 23693205.37 0.027950212 20833982.52 1.22E-05 4.915350339 0.108593975 DYTYRDYGHSSSRDDYPSR ddPTM_K562_Paclitaxel_30min_R1 2 DYTYRDYGHSSSRDDYPSR 19 2 P38159;P38159-2;H3BUY5;H0Y6E7;H3BT71;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 0 ; 66.977 0.0087036 68835000 2643.69 2307.13 2984.91 2661 2766.75 2642.92 1896.39 2470.52 4710.2 2618.47 FALSE TRUE 2680.709816 2559.030256 2231.332554 2490.33537 3143.628191 3111.604754 2256.220103 2260.633905 5162.635756 2084.824377 1.285820449 1.227456031 1.07027363 1.194506069 1.507862354 1.492502097 1.08221111 1.08432822 2.476292878 1 11.02571014 -7.302679556 0.707848625 1.490673282 1.191431839 0.064789432 0.398671183 2.23164153 2.433820787 0.296172962 0.287189996 4.98E-08 7.302679556 -0.299241443 EAADLDAVPMSLS(ph)YEELVRR ddPTM_K562_Paclitaxel_30min_R1 1 EAADLDAVPMSLSYEELVRR 20 1 A0A0A6YYG7;Q6IBW4-2;Q6IBW4;Q6IBW4-4;H0YC55 A0A0A6YYG7 NCAPH2 Condensin-2 complex subunit H2 1 EAADLDAVPMS(0.009)LS(0.99)YEELVRR 100.76 0.00039919 7508600 1008.9 965.6 1387.7 980.5 848.58 1015.5 768.91 1140.2 1101.3 1603.1 TRUE FALSE 1023.027713 1071.027473 1037.357972 917.6151186 964.1709626 1195.584667 914.8066585 1043.332893 1207.084786 1276.38734 0.801502554 0.839108506 0.812729757 0.718915873 0.755390572 0.936694238 0.716715553 0.817410875 0.945704135 1 10.31785049 -8.826176632 3.254860067 0.996162201 0.797964018 0.579560041 0.059979966 0.16504933 3.265792667 0.056727813 0.015513479 1.49E-09 8.826176632 -0.198198183 EAAFS(ph)PGQQDWSR ddPTM_K562_Paclitaxel_30min_R1 2 EAAFSPGQQDWSR 13 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 EAAFS(0.996)PGQQDWS(0.004)R;EAAFS(1)PGQQDWSR 148.85 0.00024078 25974000 3252.3 2807.7 4425.5 3500.7 3011.3 2906.5 3053.1 3445.4 2595 3979.6 TRUE FALSE 3297.842234 3114.254181 3308.227791 3276.180771 3421.490042 3421.926966 3632.409787 3152.691764 2844.261345 3168.555336 1.040803106 0.982862488 1.0440808 1.033966721 1.079826507 1.079964401 1.146393041 0.994993437 0.897652414 1 11.6296095 -8.518061206 24.44357835 0.947991738 1.056634952 0.490623964 0.045543399 138.9242115 704911.7378 0.030568538 0.012264851 3.03E-09 8.518061206 0.108643215 EAAGPAPS(ph)PMR ddPTM_K562_Paclitaxel_30min_R1 2 EAAGPAPSPMR 11 0 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 EAAGPAPS(1)PMR;EAAGPAPS(1)PMR 91.202 0.016605 101843000 3544.2 3374.4 4391.5 4113.1 3560.4 3457.7 3299.3 4149.7 3297.6 4495.3 TRUE FALSE 3593.829735 3742.828403 3282.811512 3849.304176 4045.386758 4070.874546 3925.324951 3797.157083 3614.349214 3579.155392 1.004099946 1.045729507 0.917202846 1.075478361 1.130262957 1.137384131 1.096718226 1.060908697 1.009832996 1 11.80540347 -6.426213278 11.32554588 1.082086332 0.994761809 0.346410164 0.051672667 0.697494787 78.84055458 0.014932295 0.022149333 3.75E-07 6.426213278 -0.087324523 EAALILGVS(ph)PTANK ddPTM_K562_Paclitaxel_30min_R1 2 EAALILGVSPTANK 14 0 Q96DA6-2;Q96DA6 Q96DA6-2 DNAJC19 Mitochondrial import inner membrane translocase subunit TIM14 1 EAALILGVS(0.915)PT(0.085)ANK;EAALILGVS(0.898)PT(0.102)ANK 212.35 3.00E-18 21248600 7845.2 6587.6 13052.2 9476.8 5928.4 6270.9 5963.5 8516.7 6497.8 10425.4 TRUE FALSE 7955.057005 7306.856446 9757.010682 8869.000465 6735.948449 7382.956067 7095.042993 7793.153175 7121.942723 8300.697757 0.958360036 0.880270148 1.175444639 1.06846445 0.811491834 0.889438007 0.8547526 0.938855191 0.857993259 1 13.0190169 -6.753906327 24.99975927 0.887031921 1.021666622 0.35147773 0.085371639 198.4733179 658664.8586 0.026306292 0.033296813 1.76E-07 6.753906327 0.134634701 EAALPPVS(ph)PLK ddPTM_K562_Paclitaxel_30min_R1 2 EAALPPVSPLK 11 0 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 EAALPPVS(1)PLK;EAALPPVS(1)PLK 135.58 0.00079825 234030000 12999.9 10572.3 23236.2 15018.6 11160.7 10071.4 9688.9 14918.6 8429.2 17290.5 TRUE FALSE 13181.93871 11726.61947 17369.93393 14055.37422 12680.97629 11857.42138 11527.3182 13651.17181 9238.862323 13766.68661 0.957524427 0.851811318 1.261736714 1.020970014 0.921134958 0.861312654 0.837334249 0.991609107 0.671102829 1 13.74889375 -6.881398609 3.523162511 0.871256556 1.027906454 0.236806501 0.12772254 0.353687275 8.515792679 0.041282083 0.047790661 1.31E-07 6.881398609 0.156649898 EAALPPVS(ph)PLKAALSEEELEK ddPTM_K562_Paclitaxel_30min_R1 1 EAALPPVSPLKAALSEEELEK 21 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 EAALPPVS(1)PLKAALSEEELEK 84.249 0.0010676 8582500 1963.5 1464.4 5135.5 2200.9 1793.6 1452.5 1197 2303.3 2686.1 3631.5 TRUE FALSE 1990.995058 1624.288144 3838.97951 2059.744125 2037.918686 1710.080481 1424.124501 2107.620288 2944.111907 2891.398307 0.688592455 0.561765614 1.327724202 0.712369555 0.704821152 0.591437187 0.492538333 0.72892769 1.018231179 1 11.49755165 -11.7491951 4.623600358 1.017109625 0.752906054 0.088185457 0.232352772 0.043823624 0.002377189 0.240586617 0.056381133 1.78E-12 11.7491951 -0.264203571 EAALPPVS(ph)PLKAALSEEELEKK ddPTM_K562_Paclitaxel_30min_R1 1 EAALPPVSPLKAALSEEELEKK 22 2 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 EAALPPVS(0.995)PLKAALS(0.005)EEELEKK 48.371 0.026322 15247000 2186.1 1125.6 6977.9 2407.2 1568 1067.8 884.43 2143.7 1835.8 4114.5 TRUE FALSE 2216.712145 1248.496815 5216.242843 2252.812966 1781.588146 1257.159337 1052.245975 1961.579304 2012.136793 3275.962642 0.676659775 0.38110838 1.592277878 0.687679688 0.543836527 0.383752648 0.321202068 0.59877951 0.614212374 1 11.67770319 -6.51752736 24.2329219 0.541845355 0.884266944 0.142050654 0.330092964 274.9215564 1244943.969 0.097210909 0.129545312 3.04E-07 6.51752736 0.342421588 EAASGTT(ph)PQK ddPTM_K562_Paclitaxel_30min_R1 1 EAASGTTPQK 10 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 EAAS(0.004)GT(0.228)T(0.768)PQK 107.17 0.014543 57900000 7821.5 7261.9 14419 8703.9 6626.7 6361.4 6441.7 9057.3 5485.5 10982 TRUE FALSE 7931.025131 8054.7788 10778.74512 8145.670811 7529.368731 7489.504972 7663.978947 8287.825831 6012.406785 8743.862372 0.907039109 0.921192313 1.232721269 0.931587263 0.861103299 0.856544242 0.876498122 0.947844954 0.687614527 1 13.09405498 -6.515525214 23.89408769 0.87101784 1.022363235 0.262824881 0.111489509 248.7966766 808425.3269 0.03204215 0.043247221 3.05E-07 6.515525214 0.151345395 EAASS(ph)PAGEPLR ddPTM_K562_Paclitaxel_30min_R1 1 EAASSPAGEPLR 12 0 Q96EB6;Q96EB6-2 Q96EB6 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 EAAS(0.059)S(0.941)PAGEPLR 111.72 0.0054068 20644000 2475.9 2242 3431.4 2620.1 2379.5 2385.7 2338.2 3217.6 1795.1 3814.1 TRUE FALSE 2510.570239 2486.789142 2565.100631 2452.058513 2703.628185 2808.770398 2781.861244 2944.244796 1967.527376 3036.784326 0.826719967 0.818888954 0.844676591 0.807452308 0.890293118 0.924915995 0.916054927 0.969527131 0.647898291 1 11.56832874 -6.77331032 23.07358248 0.892828367 0.825484226 0.119004193 0.089259869 193.0178182 375167.1283 0.026672065 0.030529485 1.69E-07 6.77331032 -0.067344141 EAASSSSGTQPAPPAPAS(ph)PWDSKK ddPTM_K562_Paclitaxel_30min_R1 2 EAASSSSGTQPAPPAPASPWDSKK 24 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 EAASSSSGTQPAPPAPAS(0.982)PWDS(0.018)KK;EAASSSSGTQPAPPAPAS(0.99)PWDS(0.01)KK 156.02 1.46E-25 81075000 4087.6 2663.4 9008 4631.8 3129.7 2818.2 2487.2 4952.7 3484.6 6057.8 TRUE FALSE 4144.839011 2954.199019 6733.81899 4334.737079 3556.018126 3317.968201 2959.133216 4531.937221 3819.3114 4823.217035 0.859351545 0.61249556 1.396126059 0.898723207 0.737271017 0.687916006 0.61351857 0.939608811 0.791859743 1 12.23578001 EAATQEDPEQLPELEAHGVS(ph)ES(ph)EGEERPVAEEEILLR ddPTM_K562_Paclitaxel_30min_R1 2 EAATQEDPEQLPELEAHGVSESEGEERPVAEEEILLR 37 1 Q9BVJ6-3;Q9BVJ6;Q9BVJ6-2;X6RJY0 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 2 EAATQEDPEQLPELEAHGVS(1)ES(1)EGEERPVAEEEILLR;EAATQEDPEQLPELEAHGVS(1)ES(1)EGEERPVAEEEILLR 62.594 0.00015831 65062000 2514.68 2314.86 2771.41 2681.05 2050.51 2142.3 2775.2 3057.9 2150.96 3974.9 TRUE FALSE 2549.893278 2567.604243 2071.733269 2509.099453 2329.824177 2522.206826 3301.779712 2798.112308 2357.569319 3164.813198 0.805701038 0.81129725 0.654614708 0.792811233 0.736164832 0.796952827 1.043277914 0.884131901 0.744931587 1 11.62790463 -7.542393333 24.71199243 0.91009913 0.759680387 0.44097039 0.084406754 211.5382387 267875.5147 0.03233008 0.025046306 2.87E-08 7.542393333 -0.150418743 EAATQEDPEQLPELEAHGVS(ph)ESEGEERPVAEEEILLR ddPTM_K562_Paclitaxel_30min_R1 1 EAATQEDPEQLPELEAHGVSESEGEERPVAEEEILLR 37 1 Q9BVJ6-3;Q9BVJ6;Q9BVJ6-2;X6RJY0 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 EAAT(0.001)QEDPEQLPELEAHGVS(0.5)ES(0.5)EGEERPVAEEEILLR 40.017 0.017442 25364000 620.02 788.26 944.96 832.77 751.16 635.17 605.55 820.2 480.07 929.53 TRUE FALSE 628.7021929 874.3248925 706.3931609 779.3598595 853.4807092 747.8084813 720.4499513 750.5188905 526.1828685 740.0912758 0.849492777 1.181374408 0.954467623 1.053059109 1.153210066 1.01042737 0.973460943 1.014089633 0.710970235 1 9.5315594 -8.618064519 10.21576235 0.855884579 1.03095268 0.269474801 0.110608445 0.405184594 40.18086578 0.069799385 0.026291598 2.41E-09 8.618064519 0.175068101 EAATQEDPEQLPELEAHGVS(ph)ESEGEERPVAEEEILLREFEER ddPTM_K562_Paclitaxel_30min_R1 1 EAATQEDPEQLPELEAHGVSESEGEERPVAEEEILLREFEER 42 2 Q9BVJ6-3;Q9BVJ6;Q9BVJ6-2;X6RJY0 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 EAAT(0.001)QEDPEQLPELEAHGVS(0.5)ES(0.5)EGEERPVAEEEILLREFEER 41.514 0.0039061 88969000 1712.9 1455.2 2112.3 1909.1 1264 1405.2 1750.5 1584.3 1367.9 1824 TRUE FALSE 1736.885885 1614.083657 1579.02374 1786.658871 1436.1782 1654.39249 2082.648237 1449.703826 1499.292907 1452.267799 1.19598182 1.111422878 1.087281383 1.230254415 0.988921052 1.139178663 1.43406625 0.998234504 1.032380466 1 10.5040918 EAATQEDPEQLPELEAHGVSES(ph)EGEERPVAEEEILLREFEERR ddPTM_K562_Paclitaxel_30min_R1 1 EAATQEDPEQLPELEAHGVSESEGEERPVAEEEILLREFEERR 43 3 Q9BVJ6-3;Q9BVJ6;Q9BVJ6-2;X6RJY0 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 EAATQEDPEQLPELEAHGVS(0.159)ES(0.841)EGEERPVAEEEILLREFEERR 40.163 0.0032443 48379000 808.93 736.19 1225.3 918.35 745.86 677.88 700.29 601.21 928.95 779.08 TRUE FALSE 820.2575158 816.5697138 915.9578607 859.4511414 847.4587595 798.0925001 833.1663717 550.1334579 1018.179798 620.3030684 1.322349602 1.316404441 1.476629582 1.385534242 1.366201141 1.286617044 1.343160165 0.886878505 1.641423121 1 9.276829451 -8.039476271 24.99720084 1.181494333 1.359823275 0.162256778 0.188219881 952.4152494 603085.4475 0.08203357 0.047373 9.13E-09 8.039476271 0.178328941 EAAVSASDILQESAIHS(ph)PGTVEK ddPTM_K562_Paclitaxel_30min_R1 2 EAAVSASDILQESAIHSPGTVEK 23 0 F5H3K2;F5H8B7;E7ENF1;G5EA44;F5H7W8;Q96C57 F5H3K2 C12orf43 Uncharacterized protein C12orf43 1 EAAVSASDILQESAIHS(0.999)PGT(0.001)VEK;EAAVSASDILQESAIHS(1)PGTVEK 231.23 9.75E-55 139002000 3679.6 3473.7 7073.7 4515.2 3522.6 2566.1 2572.3 4180.4 2852.7 5800.7 TRUE FALSE 3731.125753 3852.970313 5287.856949 4225.615281 4002.437758 3021.161805 3060.380497 3825.248927 3126.714581 4618.514156 0.807862795 0.834244561 1.144926002 0.914929594 0.86660723 0.654141506 0.662633131 0.82824233 0.676995777 1 12.17321307 -7.036766227 4.591786379 0.747232512 0.931281772 0.258969044 0.127295512 0.258669754 12.7470167 0.042218868 0.044015782 9.19E-08 7.036766227 0.18404926 EADIDS(ph)S(ph)DES(ph)DIEEDIDQPSAHK ddPTM_K562_Paclitaxel_30min_R1 2 EADIDSSDESDIEEDIDQPSAHK 23 0 Q9P2I0 Q9P2I0 CPSF2 Cleavage and polyadenylation specificity factor subunit 2 3 EADIDS(1)S(1)DES(1)DIEEDIDQPSAHK;EADIDS(1)S(1)DES(0.999)DIEEDIDQPS(0.001)AHK 94.96 0.00048048 22873000 3546.7 2724.35 6326.7 4203.5 2684.78 2762.74 2513.1 4375 2376.89 4884.9 TRUE FALSE 3596.364743 3021.803746 4729.446337 3933.906324 3050.49249 3252.673148 2989.947606 4003.316442 2605.200905 3889.354699 0.924668749 0.776942187 1.215997692 1.01145476 0.784318409 0.836301495 0.768751589 1.029300939 0.669828572 1 11.9253151 -6.752904104 24.97299358 0.844992849 0.984295024 0.177990417 0.141146436 327.4185837 957974.9533 0.041691463 0.052942961 1.77E-07 6.752904104 0.139302175 EADLPMTAASHSSAFTPVT(ph)AAASPVSLPR ddPTM_K562_Paclitaxel_30min_R1 1 EADLPMTAASHSSAFTPVTAAASPVSLPR 29 0 Q9Y4B6-3;Q9Y4B6-2;Q9Y4B6 Q9Y4B6-3 VPRBP Protein VPRBP 1 EADLPMTAASHSSAFT(0.007)PVT(0.602)AAAS(0.334)PVS(0.057)LPR 72.459 0.00019475 36163000 1016 1169 1774.7 1256.1 1231.3 1004 1102.3 1524.6 895.37 1568.6 TRUE FALSE 1030.227135 1296.635373 1326.655036 1175.539368 1399.023906 1182.045303 1311.455671 1395.075714 981.3742891 1248.918459 0.824895434 1.038206589 1.062243116 0.941245891 1.120188349 0.946455147 1.050073094 1.117027059 0.785779313 1 10.28646357 -5.256684939 24.4580656 1.013152762 0.824895329 0.250246889 0.093881845 478.9939479 2463952.03 0.021750561 0.169895824 5.54E-06 5.256684939 -0.188257434 EADLPMTAASHSSAFTPVTAAAS(ph)PVSLPR ddPTM_K562_Paclitaxel_30min_R1 1 EADLPMTAASHSSAFTPVTAAASPVSLPR 29 0 Q9Y4B6-3;Q9Y4B6-2;Q9Y4B6 Q9Y4B6-3 VPRBP Protein VPRBP 1 EADLPMTAASHSSAFT(0.002)PVT(0.027)AAAS(0.897)PVS(0.075)LPR 123.08 9.64E-15 36377000 1850 1906.9 2443.1 2306 1868.2 2059.1 2161.8 2150.2 1781.5 2674.6 TRUE FALSE 1875.905708 2115.101791 1826.309189 2158.103481 2122.680469 2424.252474 2571.990265 1967.527089 1952.621035 2129.515052 0.880907466 0.99323167 0.857617413 1.013424854 0.996790545 1.138405888 1.207782149 0.923931994 0.916932253 1 11.05630921 -6.428639789 5.059115844 1.038418055 0.919131592 0.261915753 0.089778732 0.337498236 13.81335671 0.027869197 0.041549193 3.73E-07 6.428639789 -0.119286463 EAEDS(ph)DS(ph)DDNIKR ddPTM_K562_Paclitaxel_30min_R1 1 EAEDSDSDDNIKR 13 1 Q96ST2;Q96ST2-3;Q96ST2-2 Q96ST2 IWS1 Protein IWS1 homolog 2 EAEDS(1)DS(1)DDNIKR 99.991 0.0094516 25616000 6174.5 4973.6 11429 7225.1 4518.8 4745.4 4487.9 7078.6 4526.4 8986.7 TRUE FALSE 6260.96205 5516.634468 8543.607598 6761.714424 5134.337064 5586.930061 5339.455597 6477.228747 4961.180944 7155.205607 0.875021962 0.770995939 1.194040824 0.945006307 0.71756667 0.780820338 0.746233706 0.905247047 0.69336665 1 12.80477751 -6.719958989 13.54577541 0.798111317 0.95149695 0.21226774 0.130378213 2.233306078 726.8357331 0.038353402 0.049474442 1.91E-07 6.719958989 0.153385634 EAEEES(ph)S(ph)GGEEEDEDENIEVVYSK ddPTM_K562_Paclitaxel_30min_R1 1 EAEEESSGGEEEDEDENIEVVYSK 24 0 P55010 P55010 EIF5 Eukaryotic translation initiation factor 5 2 EAEEES(1)S(1)GGEEEDEDENIEVVYSK 63.085 0.016123 0 1554.3 1112.4 2694.1 1637.1 1089.3 1077.6 1036.1 1757.1 1297 2056.6 TRUE FALSE 1576.064995 1233.855594 2013.941135 1532.103733 1237.681102 1268.69723 1232.694566 1607.823388 1421.582645 1637.463791 0.962503723 0.753516261 1.229914912 0.935656557 0.755852501 0.774794067 0.752807221 0.98189859 0.86816127 1 10.67724729 -3.804442419 9.552018842 0.895270985 0.988931102 0 0.145494937 0 0 0.034262481 0 0.000156876 3.804442419 0.093660118 EAEEGEDDRDS(ph)ANGEDDS ddPTM_K562_Paclitaxel_30min_R1 1 EAEEGEDDRDSANGEDDS 18 1 G3V2D6;G3V4C1;P07910-4;P07910-2;P07910-3;G3V2Q1;P07910 G3V2D6;G3V2Q1 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 EAEEGEDDRDS(0.917)ANGEDDS(0.083) 120.79 0.00018292 52964000 2130.9 2436.9 2905.5 2595.6 2808.2 1921.9 2262.9 2583.8 1492.8 3198.6 TRUE FALSE 2160.739174 2702.968983 2171.97059 2429.129833 3190.724383 2262.72198 2692.273462 2364.290062 1636.19011 2546.723564 0.848438835 1.061351542 0.852848978 0.953825483 1.252874253 0.888483545 1.057151824 0.928365409 0.642468673 1 11.31442665 -8.534219924 24.77813791 0.809295146 0.990708025 0.182928747 0.139065321 301.7449029 659233.7847 0.089189607 0.033773901 2.92E-09 8.534219924 0.181412879 EAEFS(ph)DPENTR ddPTM_K562_Paclitaxel_30min_R1 1 EAEFSDPENTR 11 0 Q5T481 Q5T481 RBM20 RNA-binding protein 20 1 EAEFS(1)DPENTR 130.56 0.00087396 36942000 1009.7 1133.3 1341.2 1478.6 1085.5 778.85 912.54 1406.1 1057.3 1589.3 TRUE FALSE 1023.838915 1257.037527 1002.597472 1383.769214 1233.363478 916.9681119 1085.689701 1286.643028 1158.858389 1265.399788 0.809103119 0.993391605 0.79231677 1.093543106 0.974682855 0.724646962 0.857981574 1.01678777 0.91580416 1 10.30537754 -8.259969416 24.98002657 0.974721973 0.896753049 0.121039098 0.104752753 324.8232434 5520043.055 0.053705521 0.028884958 5.50E-09 8.259969416 -0.077968924 EAEHLSSPWGESS(ph)PEELR ddPTM_K562_Paclitaxel_30min_R1 2 EAEHLSSPWGESSPEELR 18 0 Q6PJI9-3;Q6PJI9;Q6PJI9-4;H3BNY4 Q6PJI9-3 WDR59 WD repeat-containing protein 59 1 EAEHLSSPWGES(0.194)S(0.806)PEELR;EAEHLSSPWGES(0.218)S(0.782)PEELR 215.62 3.33E-25 51783000 5894.4 4931.7 6248.1 6048.9 5163.3 5276.1 5520.7 5954.1 4163.7 6579.8 TRUE FALSE 5976.939786 5470.159684 4670.689879 5660.950628 5866.628875 6211.742255 6568.224005 5448.262041 4563.641989 5238.833148 1.140891419 1.044156118 0.891551563 1.080574713 1.11983503 1.185711031 1.253757052 1.039976248 0.871118026 1 12.3550298 -8.54833556 9.2668958 0.941541053 1.098730671 0.330660996 0.094038598 0.395202484 130.9036116 0.069938694 0.026662236 2.83E-09 8.54833556 0.157189618 EAELQQLRDS(ph)LDENEATMCQAYEER ddPTM_K562_Paclitaxel_30min_R1 1 EAELQQLRDSLDENEATMCQAYEER 25 1 Q9BRK4 Q9BRK4 LZTS2 Leucine zipper putative tumor suppressor 2 1 EAELQQLRDS(0.989)LDENEAT(0.011)MCQAYEER 56.453 0.0087704 8891500 200.53 185.46 241.61 264.05 100.05 270.05 269.04 192.93 151.96 150.02 TRUE FALSE 203.3380387 205.70915 180.6125673 247.1150148 113.6785039 317.9395758 320.0889355 176.5393923 166.556437 119.4458417 1.702345062 1.722195994 1.512087527 2.068845691 0.951715876 2.661788568 2.679782997 1.477986926 1.394409673 1 6.900212819 -6.223784889 21.64863221 1.811453721 1.653208618 0 0.570362808 790.8735041 454686.5369 0.159979356 0.27706718 5.97E-07 6.223784889 -0.158245103 EAFAQRPSS(ph)APDLMCLSPDR ddPTM_K562_Paclitaxel_30min_R1 1 EAFAQRPSSAPDLMCLSPDR 20 1 G8JLH2;B4DIG0;P30305-3;P30305-2;P30305;P30305-4 G8JLH2 CDC25B M-phase inducer phosphatase 2 1 EAFAQRPS(0.43)S(0.561)APDLMCLS(0.008)PDR 64.547 0.015322 14105000 399.29 296.51 670.71 352.18 376.19 547.07 268.15 555.43 464.9 511.33 TRUE FALSE 404.8812919 328.8839645 501.3809653 329.5927511 427.4334469 644.0851833 319.0300627 508.2427546 509.5557222 407.1206653 0.994499485 0.807829208 1.231529146 0.809570182 1.049893762 1.58204984 0.783625323 1.248383582 1.251608591 1 8.669312644 -7.007442977 24.96517494 1.181164133 0.964319127 0.172617055 0.219498554 598.8149398 2008547.611 0.067004187 0.072921099 9.83E-08 7.007442977 -0.216845006 EAGDVCYADVYR ddPTM_K562_Paclitaxel_30min_R1 2 EAGDVCYADVYR 12 0 J3KTL2;Q07955;J3KSR8;Q07955-3;Q07955-2 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 0 ; 155.11 0.0092119 16666000 1689.62 1855.11 2273 1733.86 1905.7 1749.48 1719.89 2104.26 1580.59 2439.8 FALSE TRUE 1713.279893 2057.657183 1699.153038 1622.65798 2165.288604 2059.725714 2046.230149 1925.489979 1732.412732 1942.567421 0.881966759 1.059246213 0.8746945 0.835316171 1.114653 1.060311056 1.053363774 0.991208829 0.891816013 1 10.92374896 -6.758872436 24.99967025 1.021947078 0.920543704 0.308377466 0.077140319 95.72749438 932287.6806 0.024454308 0.030125271 1.74E-07 6.758872436 -0.101403374 EAGELPTS(ph)PLHLLSPGTPR ddPTM_K562_Paclitaxel_30min_R1 2 EAGELPTSPLHLLSPGTPR 19 0 H7C228;Q969R5-2;Q969R5-3;Q969R5 H7C228 L3MBTL2 Lethal(3)malignant brain tumor-like protein 2 1 EAGELPT(0.144)S(0.856)PLHLLSPGTPR;EAGELPT(0.21)S(0.79)PLHLLSPGTPR 149.93 3.79E-12 13550200 2460.34 2245.18 3849.92 3295.42 2874.58 2676.25 2958.45 3350.56 1757.9 3810.06 TRUE FALSE 2494.792351 2490.316345 2877.960081 3084.066511 3266.146463 3150.845361 3519.800443 3065.909014 1926.75415 3033.567681 0.822395481 0.820919988 0.948704754 1.01664668 1.076668401 1.038659985 1.160284132 1.010661155 0.635144606 1 11.56679978 -5.866721349 3.07387912 1.003523671 0.817319394 0.206044218 0.129350354 0.374543042 6.979242236 0.036296159 0.092160494 1.36E-06 5.866721349 -0.186204277 EAGENAPVLS(ph)DDELVSMSVR ddPTM_K562_Paclitaxel_30min_R1 2 EAGENAPVLSDDELVSMSVR 20 0 O60675 O60675 MAFK Transcription factor MafK 1 EAGENAPVLS(1)DDELVSMSVR;EAGENAPVLS(1)DDELVSMSVR 216.31 1.06E-29 8752300 1253.15 1198.33 1538.78 1343.18 1277.72 1301.42 1158.03 1421.87 1186.31 1525.5 TRUE FALSE 1270.697966 1329.167722 1150.295958 1257.034447 1451.767096 1532.208564 1377.760147 1301.073268 1300.260376 1214.602263 1.046184422 1.094323436 0.947055668 1.034935044 1.195261314 1.261489964 1.134330299 1.071192858 1.070523591 1 10.24626825 -6.683453201 9.172859404 1.13318295 1.028688017 0.25315697 0.075582182 0.420660523 45.40353807 0.02370366 0.030592198 2.07E-07 6.683453201 -0.104494932 EAGLSQS(ph)HDDLSNATATPSVR ddPTM_K562_Paclitaxel_30min_R1 3 EAGLSQSHDDLSNATATPSVR 21 0 O14523-2;O14523 O14523-2 C2CD2L C2 domain-containing protein 2-like 1 EAGLS(0.021)QS(0.979)HDDLSNATATPSVR;EAGLS(0.006)QS(0.977)HDDLS(0.015)NAT(0.002)ATPSVR;EAGLS(0.002)QS(0.998)HDDLSNATATPSVR 145.14 5.38E-17 158442000 4067.66 3385 4826.02 3882.76 3238.29 2960.75 3445.44 3954.85 3201.8 4005.15 TRUE FALSE 4124.61979 3754.585747 3607.631564 3633.737152 3679.399923 3485.797442 4099.194254 3618.860807 3509.347196 3188.898232 1.293430988 1.177392778 1.131309719 1.139496117 1.153815411 1.093104009 1.285457847 1.134831075 1.100488928 1 11.63884234 -15 0.150094005 0.403866103 1.217721447 0.448149901 0.061508129 139.1218459 1.238347914 24.68230542 0.323714714 1.00E-15 15 0.813855344 EALAEAALES(ph)PRPALVR ddPTM_K562_Paclitaxel_30min_R1 3 EALAEAALESPRPALVR 17 1 J3QRP6;O14745-2;O14745 J3QRP6 SLC9A3R1 Na(+)/H(+) exchange regulatory cofactor NHE-RF1 1 EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR;EALAEAALES(1)PRPALVR 83.292 0.0087436 588893000 3468.29 2950.6 4073.52 3608.11 2606.87 2948.67 2947.93 3703.26 3034.59 3411.45 TRUE FALSE 3516.856761 3272.756486 3045.109495 3376.701974 2961.969829 3471.575223 3507.284328 3388.644948 3326.075928 2716.194617 1.294773481 1.204905004 1.121094003 1.243173796 1.090485126 1.278102534 1.291249274 1.247570747 1.224535203 1 11.40737114 -11.3944193 3.080997276 0.997034279 1.219536706 0.511895383 0.064932418 20019326.96 24658705.99 527343.9704 0.016952812 4.03E-12 11.3944193 0.222502427 EALGLGPPAAQLT(ph)PPPAPVGLR ddPTM_K562_Paclitaxel_30min_R1 4 EALGLGPPAAQLTPPPAPVGLR 22 0 A0A087WZ13;E9PAU2;Q8IY67-2;Q8IY67 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 EALGLGPPAAQLT(1)PPPAPVGLR;EALGLGPPAAQLT(1)PPPAPVGLR;EALGLGPPAAQLT(1)PPPAPVGLR;EALGLGPPAAQLT(1)PPPAPVGLR 141.74 3.39E-16 95846500 5076.46 4739.57 6362.3 4942.5 4694.56 4279.78 5447.09 6698.8 3196.85 7910.3 TRUE FALSE 5147.546102 5257.052281 4756.058677 4625.510172 5334.038552 5038.738892 6480.646892 6129.695127 3503.921726 6298.176518 0.817307373 0.834694338 0.75514852 0.734420536 0.846917919 0.800031386 1.028971937 0.973249179 0.556339079 1 12.62071848 -7.580963271 24.99964058 0.891281141 0.7968319 0.111838722 0.126363599 184.3582292 79346.01122 0.047882495 0.037089625 2.62E-08 7.580963271 -0.094449241 EANANGS(ph)SPEPVKAVEAR ddPTM_K562_Paclitaxel_30min_R1 1 EANANGSSPEPVKAVEAR 18 1 Q3KQU3-2;Q3KQU3-4;Q3KQU3;Q3KQU3-3 Q3KQU3-2 MAP7D1 MAP7 domain-containing protein 1 1 EANANGS(0.5)S(0.5)PEPVKAVEAR 96.633 0.00091729 88202000 2195.9 1846.2 3735.8 2007.8 1676.2 1927.2 1436.8 2177.4 1892.5 2874.4 TRUE FALSE 2226.649375 2047.774359 2792.651086 1879.028695 1904.526818 2268.961861 1709.425299 1992.416279 2074.283081 2288.595702 0.972932604 0.894773313 1.220246583 0.821040035 0.832181419 0.991421009 0.746931971 0.870584646 0.906356277 1 11.16024691 EANANGSS(ph)PEPVKAVEAR ddPTM_K562_Paclitaxel_30min_R1 1 EANANGSSPEPVKAVEAR 18 1 Q3KQU3-2;Q3KQU3-4;Q3KQU3;Q3KQU3-3 Q3KQU3-2 MAP7D1 MAP7 domain-containing protein 1 1 EANANGS(0.262)S(0.738)PEPVKAVEAR 74.859 0.011682 71356000 1285.5 927.26 2439.5 1241.6 1139.9 974.69 813.48 1308.9 1140.4 1725 TRUE FALSE 1303.500966 1028.501383 1823.618054 1161.969333 1295.173679 1147.537586 967.8335833 1197.700775 1249.940515 1373.444053 0.949074673 0.748848401 1.327770177 0.846025967 0.943011603 0.835518261 0.70467638 0.87204191 0.910077489 1 10.42358243 EANNCS(ph)SPAGILVDAMSQK ddPTM_K562_Paclitaxel_30min_R1 1 EANNCSSPAGILVDAMSQK 19 0 K7EK35;P42229 K7EK35 STAT5A Signal transducer and activator of transcription;Signal transducer and activator of transcription 5A 1 EANNCS(0.5)S(0.5)PAGILVDAMSQK 212.26 6.10E-29 39062000 2101.2 1996.8 3794.3 2719 1526.9 1446.4 1567.2 2526.3 1967.6 3129.7 TRUE FALSE 2130.623283 2214.817377 2836.382038 2544.61551 1734.889631 1702.898732 1864.568019 2311.675046 2156.596771 2491.865422 0.855031441 0.888819018 1.13825651 1.021168915 0.696221239 0.683383106 0.748261925 0.92768856 0.865454752 1 11.28301044 -6.746743307 24.99862441 0.806118107 0.981207401 0.293102314 0.11708814 298.9019769 508442.4459 0.036974638 0.047525416 1.79E-07 6.746743307 0.175089294 EANNCSS(ph)PAGILVDAMSQK ddPTM_K562_Paclitaxel_30min_R1 1 EANNCSSPAGILVDAMSQK 19 0 K7EK35;P42229 K7EK35 STAT5A Signal transducer and activator of transcription;Signal transducer and activator of transcription 5A 1 EANNCS(0.038)S(0.962)PAGILVDAMSQK 197.41 9.54E-19 38967000 2262.5 2047.1 3841.3 2978.2 1857.1 1637.3 1704.5 2863.2 2191.5 3161.7 TRUE FALSE 2294.18198 2270.609301 2871.516306 2787.191582 2110.068461 1927.652166 2027.919977 2619.953288 2402.003367 2517.343805 0.91135028 0.901986172 1.14069294 1.10719544 0.838212268 0.76574847 0.805579267 1.040761013 0.95418169 1 11.29768655 EANNGS(ph)SPAGSLADAMSQK ddPTM_K562_Paclitaxel_30min_R1 1 EANNGSSPAGSLADAMSQK 19 0 P51692;C9J4I3 P51692 STAT5B Signal transducer and activator of transcription 5B 1 EANNGS(0.648)S(0.352)PAGS(0.001)LADAMSQK 152.01 7.38E-12 42703000 1938 1575.1 2866.8 2076.3 1341.2 1158.4 1313.7 1688.3 1510.3 2311.8 TRUE FALSE 1965.137979 1747.074745 2143.040884 1943.135411 1523.894147 1363.825975 1562.967717 1544.868377 1655.371063 1840.653891 1.067630362 0.949159836 1.164282375 1.055676692 0.827909122 0.740946455 0.849137214 0.839304111 0.899338584 1 10.84600266 -6.758138817 24.94691582 0.844964698 1.058835045 0.606207316 0.078350324 53.33429168 403117.5667 0.023297939 0.028835904 1.75E-07 6.758138817 0.213870347 EANNGSS(ph)PAGSLADAMSQK ddPTM_K562_Paclitaxel_30min_R1 1 EANNGSSPAGSLADAMSQK 19 0 P51692;C9J4I3 P51692 STAT5B Signal transducer and activator of transcription 5B 1 EANNGS(0.029)S(0.971)PAGSLADAMSQK 178.71 8.94E-15 44359000 2835.5 2449.4 4566.2 3383.5 2278.9 1693.4 1829.6 3128.2 2580.3 3626.7 TRUE FALSE 2875.205748 2716.833775 3413.406336 3166.497454 2589.324762 1993.700713 2176.757049 2862.439884 2828.149344 2887.576549 0.995715853 0.940869871 1.182100726 1.096593424 0.896712076 0.690440818 0.75383527 0.991294892 0.979419695 1 11.49564348 -6.833877532 6.0363479 0.866544271 1.054536666 0.34817999 0.11164357 0.235981198 14.82634808 0.038007303 0.043546805 1.47E-07 6.833877532 0.187992396 EAPAPT(ph)PT(ph)SLEVS(ph)SPPDT(ph)TEEEDHK ddPTM_K562_Paclitaxel_30min_R1 1 EAPAPTPTSLEVSSPPDTTEEEDHK 25 0 A8MUH7-2;A8MUH7 A8MUH7-2 PDZK1P1 Putative PDZ domain-containing protein 1P 4 EAPAPT(0.664)PT(0.664)S(0.664)LEVS(0.504)S(0.504)PPDT(0.873)T(0.125)EEEDHK 42.612 0.028035 11785000 713.57 762.04 750.26 752.14 622.53 641.56 527.49 702.58 850.77 916.47 TRUE FALSE 723.5621816 845.2421043 560.8475839 703.9011069 707.3291255 755.3316581 627.5784738 642.8914436 932.4902598 729.6929109 0.991598206 1.158353181 0.768607692 0.964653892 0.969351785 1.035136352 0.86005834 0.881043839 1.277921501 1 9.511145628 -8.748574981 24.99999594 1.138960827 0.954752368 0.285942259 0.11715532 250.7880933 487374.3232 0.078738631 0.029346251 1.78E-09 8.748574981 -0.18420846 EAPPPVLLT(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 EAPPPVLLTPK 11 0 P48634-2;P48634-3;P48634 P48634-2 PRRC2A Protein PRRC2A 1 EAPPPVLLT(1)PK 119.39 0.0076311 6154200 2600 2107.3 3971.7 2499.6 1735.3 1965.6 2006 2278.5 1425.7 3374.8 TRUE FALSE 2636.408022 2337.38214 2968.995214 2339.286844 1971.677239 2314.171562 2386.628028 2084.927203 1562.644855 2687.013908 0.981166496 0.869880924 1.104942258 0.870589779 0.733780065 0.861242867 0.88820829 0.775927209 0.581554435 1 11.39178807 -6.514793468 23.4133453 0.802358463 0.976115191 0.324524963 0.114875332 192.5772628 557666.0608 0.032870176 0.044600954 3.06E-07 6.514793468 0.173756728 EAPS(ph)PTLR ddPTM_K562_Paclitaxel_30min_R1 2 EAPSPTLR 8 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 EAPS(0.947)PT(0.053)LR;EAPS(0.962)PT(0.038)LR 131.62 0.00015879 33604000 5395.9 4890.9 6667.1 5799.6 4739.7 4520 4539.4 5502 4880.3 5935.9 TRUE FALSE 5471.459248 5424.905002 4983.908147 5427.639614 5385.327384 5321.558536 5400.727453 5034.570758 5349.074621 4726.160322 1.157696497 1.147846165 1.054536412 1.148424777 1.139472006 1.125979267 1.14273048 1.065256025 1.131801348 1 12.20645285 -14.9999853 0.237349203 0.303450863 1.135315614 0.570411886 0.032780409 124.4107749 1.243358911 41.68354729 0.053271457 1.00E-15 14.9999853 0.831864751 EAPS(ph)PTLRR ddPTM_K562_Paclitaxel_30min_R1 1 EAPSPTLRR 9 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 EAPS(0.97)PT(0.03)LRR 77.644 0.022816 21430000 616.7 590.1 771.67 762.08 606.94 636.73 532.91 795.81 658.85 764.05 TRUE FALSE 625.3357027 654.5291136 576.8523646 713.2035997 689.6155036 749.6451254 634.0268905 728.2009732 722.1354863 608.3361906 1.027944272 1.075933215 0.948246009 1.172383972 1.133609202 1.232287569 1.042231089 1.197037073 1.187066457 1 9.248725024 -6.276105609 24.72703184 1.14579213 1.023230367 0.360421819 0.072848701 676.870308 1141191.005 0.019438241 0.028988671 5.30E-07 6.276105609 -0.122561763 EAPSPLMIHS(ph)PQMS(ph)QFQSLTHQSPPQQNVQPK ddPTM_K562_Paclitaxel_30min_R1 1 EAPSPLMIHSPQMSQFQSLTHQSPPQQNVQPK 32 0 O60885 O60885 BRD4 Bromodomain-containing protein 4 2 EAPS(0.028)PLMIHS(0.938)PQMS(0.272)QFQS(0.272)LT(0.245)HQS(0.245)PPQQNVQPK 43.801 0.023757 10401000 763.44 527.75 968.75 683.65 555.16 661.88 534.25 747.44 772.75 913.86 TRUE FALSE 774.1305154 585.3715297 724.1770812 639.8037489 630.7821909 779.2551247 635.6211485 683.9403066 846.9760902 727.6148304 1.063928995 0.80450742 0.995275317 0.879316531 0.866917722 1.07097202 0.87356816 0.939975765 1.164044567 1 9.507031138 -8.697538007 9.830347197 1.081633613 0.932261821 0.293365969 0.089940242 0.376095196 54.8589789 0.056765782 0.021324623 2.01E-09 8.697538007 -0.149371791 EAPSPLMIHSPQMSQFQSLT(ph)HQSPPQQNVQPK ddPTM_K562_Paclitaxel_30min_R1 1 EAPSPLMIHSPQMSQFQSLTHQSPPQQNVQPK 32 0 O60885 O60885 BRD4 Bromodomain-containing protein 4 1 EAPSPLMIHSPQMS(0.02)QFQS(0.02)LT(0.48)HQS(0.48)PPQQNVQPK 107.65 5.43E-14 59372000 1741.5 1387.8 2838.7 2136.9 1734.1 1576.8 1503.5 2131.9 1691.1 2936.3 TRUE FALSE 1765.886373 1539.324697 2122.035076 1999.848798 1970.313779 1856.423341 1788.781276 1950.781788 1853.537711 2337.880448 0.755336473 0.658427465 0.907674761 0.855411063 0.842777816 0.794062563 0.76512949 0.834423244 0.79282827 1 11.19098544 -15 0.30092707 2.644753112 0.792207955 0.467361351 0.063947004 266.0910312 2.462975519 276.2552154 0.068767424 1.00E-15 15 -1.852545157 EAPSPLMIHSPQMSQFQSLTHQS(ph)PPQQNVQPK ddPTM_K562_Paclitaxel_30min_R1 1 EAPSPLMIHSPQMSQFQSLTHQSPPQQNVQPK 32 0 O60885 O60885 BRD4 Bromodomain-containing protein 4 1 EAPSPLMIHSPQMS(0.001)QFQS(0.011)LT(0.156)HQS(0.832)PPQQNVQPK 111.4 1.17E-14 57670000 1528.7 1506.3 3107.5 1945.4 1374.9 1354.4 1207.3 2024 1469 2364.7 TRUE FALSE 1550.106516 1670.762928 2322.973192 1820.630751 1562.184657 1594.583823 1436.378872 1852.048567 1610.104014 1882.772842 0.823310429 0.887394852 1.233804281 0.966994377 0.82972551 0.846933729 0.762906093 0.983681369 0.855176991 1 10.87864323 -6.649835366 6.380832365 0.87188667 0.992304431 0.136696072 0.118954579 0.390057529 20.4255276 0.036586635 0.047295452 2.24E-07 6.649835366 0.120417761 EAQSSQATPVQTSQPDSSNIVKVS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 EAQSSQATPVQTSQPDSSNIVKVSPR 26 1 H7C5E4;Q8IZH2-2;Q8IZH2 H7C5E4 XRN1 5-3 exoribonuclease 1 1 EAQSSQATPVQTSQPDS(0.084)S(0.348)NIVKVS(0.568)PR 91.213 3.95E-05 17454000 1193.1 731 1739.5 1439.1 904.26 899.64 954.13 1333.4 1022.9 1604.5 TRUE FALSE 1209.807081 810.8130521 1300.341711 1346.802567 1027.435521 1059.178522 1135.171187 1220.119347 1121.154115 1277.502019 0.947009917 0.634686317 1.0178784 1.054246918 0.80425354 0.829101251 0.888586608 0.955082128 0.877614359 1 10.31910986 -15 0.150693401 1.397152117 0.854384083 0.079468743 0.112766619 381.6254296 3.403939314 45.38083513 0.585517833 1.00E-15 15 -0.542768033 EAQTLDSQIQET(ph)SI ddPTM_K562_Paclitaxel_30min_R1 2 EAQTLDSQIQETSI 14 0 E7EVA0;P27816;P27816-2;P27816-4 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 EAQTLDSQIQET(0.5)S(0.5)I;EAQTLDSQIQET(0.693)S(0.307)I 190.24 2.38E-06 58028000 7399.6 6725 9121.7 8658.7 7370 6759.7 7482.4 9198.3 7355.6 9250.2 TRUE FALSE 7503.21723 7459.258242 6818.814019 8103.369737 8373.918775 7958.437884 8902.146339 8416.847001 8062.138246 7365.004162 1.01876619 1.01279756 0.925839805 1.100253246 1.13698765 1.080574798 1.208708935 1.142816326 1.094654948 1 12.84647063 -6.390015129 5.993613119 1.120852483 0.989182412 0.503132568 0.055591543 0.174262746 7.747157689 0.015361364 0.022909875 4.07E-07 6.390015129 -0.131670071 EARGS(ph)PNTASAEATLPR ddPTM_K562_Paclitaxel_30min_R1 1 EARGSPNTASAEATLPR 17 1 Q6PJG6;Q6PJG6-3 Q6PJG6 BRAT1 BRCA1-associated ATM activator 1 1 EARGS(0.985)PNT(0.013)AS(0.002)AEAT(0.001)LPR 91.518 0.016603 20353000 935.78 889.66 1116.7 972.24 953.02 959.67 788.77 1099.3 1115.3 1093.1 TRUE FALSE 948.8838071 986.7960874 834.7752738 909.884878 1082.837459 1129.854 938.4349898 1005.907603 1222.429548 870.32562 1.090262984 1.133824013 0.959152821 1.045453399 1.244175093 1.298196875 1.078257342 1.155783054 1.40456574 1 9.765411456 -6.754238173 24.96260454 1.203758582 1.05564686 0.267799165 0.112769826 216.4735576 750390.158 0.033191996 0.041949587 1.76E-07 6.754238173 -0.148111721 EARS(ph)PQPNK ddPTM_K562_Paclitaxel_30min_R1 2 EARSPQPNK 9 1 A9Z1X7;Q8IYB3-2;Q8IYB3;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 EARS(1)PQPNK;EARS(1)PQPNK 79.201 0.025087 54239000 7182.5 5765.5 11520.2 7736.8 6890 5178.1 5013.2 8044 5621.5 9252 TRUE FALSE 7283.07716 6394.996788 8611.78303 7240.596277 7828.534649 6096.363331 5964.428529 7360.611991 6161.470193 7366.437321 0.988683789 0.868126139 1.169056717 0.982916973 1.062730097 0.827586398 0.809676139 0.999209207 0.836424709 1 12.84675133 -7.258062657 24.88841411 0.889223419 1.01303561 0.291819973 0.093055873 366.8117045 2703621.833 0.031139015 0.029911519 5.52E-08 7.258062657 0.123812191 EAS(ph)PAPLAQGEPGREDLPTR ddPTM_K562_Paclitaxel_30min_R1 1 EASPAPLAQGEPGREDLPTR 20 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 EAS(0.838)PAPLAQGEPGREDLPT(0.162)R 67.88 0.011394 75753000 972.88 1262.6 1536.4 1546.5 1307.4 827.78 1184.8 1376.3 866.14 1600.1 TRUE FALSE 986.5033216 1400.454938 1148.516818 1447.314412 1485.490014 974.5751604 1409.609615 1259.374724 949.336617 1273.998742 0.774336182 1.099259279 0.901505457 1.136040692 1.166005873 0.764973409 1.106445061 0.988521168 0.745162916 1 10.31514814 -8.563218676 24.79222407 0.87066783 1.000301778 0.09436521 0.146840315 307.2505873 188825.4049 0.094554495 0.035738334 2.73E-09 8.563218676 0.129633947 EAS(ph)QKER ddPTM_K562_Paclitaxel_30min_R1 1 EASQKER 7 1 K7EIQ0 K7EIQ0 MPPE1 1 EAS(1)QKER 77.318 0.027684 5361500 0 55.163 156.09 0 110.35 0 0 0 0 0 TRUE FALSE 0 61.18588289 116.683149 0 125.3815382 0 0 0 0 0 0 EASRPPEEPSAPS(ph)PTLPAQFK ddPTM_K562_Paclitaxel_30min_R1 4 EASRPPEEPSAPSPTLPAQFK 21 1 H0Y3X6;A0A0C4DFX9;Q9H3P2;Q9H3P2-7 H0Y3X6 NELFA Negative elongation factor A 1 EASRPPEEPSAPS(0.962)PT(0.038)LPAQFK;EASRPPEEPS(0.032)APS(0.587)PT(0.381)LPAQFK;EASRPPEEPS(0.003)APS(0.987)PT(0.01)LPAQFK;EASRPPEEPS(0.001)APS(0.978)PT(0.022)LPAQFK 124.25 1.98E-07 336043000 7704.3 6420.87 14158.4 8659.5 6695.3 5661.2 6226.5 8512.4 7835.1 10759.8 TRUE FALSE 7812.18397 7121.922301 10583.93681 8104.118428 7607.313212 6665.134333 7407.94587 7789.218487 8587.696363 8566.946854 0.911898265 0.831325608 1.235438598 0.945975103 0.887984172 0.778005799 0.864712481 0.909217557 1.002422042 1 13.06456542 EASTTAAAPGEETS(ph)PVQVPAR ddPTM_K562_Paclitaxel_30min_R1 1 EASTTAAAPGEETSPVQVPAR 21 0 Q5SXM2 Q5SXM2 SNAPC4 snRNA-activating protein complex subunit 4 1 EASTTAAAPGEET(0.234)S(0.766)PVQVPAR 180.03 2.03E-22 21644000 2478.2 2183.2 3103.7 2702.8 2290.1 2350.8 1893.6 2756.7 1881.5 2758.9 TRUE FALSE 2512.902446 2421.569159 2320.132549 2529.454505 2602.050392 2767.681373 2252.900715 2522.501128 2062.226482 2196.634666 1.143978325 1.102399592 1.056221403 1.151513515 1.1845622 1.259964352 1.02561466 1.148348047 0.938811772 1 11.10107923 -8.758139768 24.99990208 0.969405845 1.133269412 0.522097102 0.063014565 64.68032482 490088.7848 0.048496806 0.016632416 1.75E-09 8.758139768 0.163863568 EAT(ph)VEDLGQHET(ph)VIPGELPLVQELT(ph)S(ph)TLR ddPTM_K562_Paclitaxel_30min_R1 1 EATVEDLGQHETVIPGELPLVQELTSTLR 29 0 Q9H7D0-2;Q9H7D0 Q9H7D0-2 DOCK5 Dedicator of cytokinesis protein 5 4 EAT(0.999)VEDLGQHET(1)VIPGELPLVQELT(0.893)S(0.567)T(0.541)LR 43.041 0.029729 0 65.883 0 120.91 130.66 0 0 56.918 0 70.17 0 TRUE FALSE 66.80556527 0 90.3847751 122.2800524 0 0 67.71789337 0 76.91014203 0 0 EATAQKPTGSVGSTVTT(ph)PPPLVR ddPTM_K562_Paclitaxel_30min_R1 3 EATAQKPTGSVGSTVTTPPPLVR 23 1 Q86YP4-2;Q86YP4;Q86YP4-3 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 EATAQKPTGSVGS(0.004)T(0.018)VT(0.236)T(0.742)PPPLVR;EATAQKPTGSVGS(0.001)T(0.005)VT(0.233)T(0.761)PPPLVR;EATAQKPTGSVGS(0.002)T(0.008)VT(0.405)T(0.585)PPPLVR 82.8 0.0033283 283109000 5231.5 4506.8 8739.4 5659.9 4881.7 4233.9 3781.2 5449.3 5682.4 6789.4 TRUE FALSE 5304.757141 4998.867665 6533.030382 5296.899347 5546.670188 4984.722718 4498.662961 4986.347952 6228.21991 5405.716553 0.981323584 0.924737288 1.208541054 0.979869976 1.026074921 0.922120623 0.832204744 0.922421274 1.152154363 1 12.40027015 -7.24381654 21.87930348 0.952583073 1.026377194 0.066910393 0.10301111 405.7666647 503769.6665 0.035016315 0.034894386 5.70E-08 7.24381654 0.073794121 EATDAIGHLDR ddPTM_K562_Paclitaxel_30min_R1 1 EATDAIGHLDR 11 0 Q12906;Q12906-7;Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3 Q12906 ILF3 Interleukin enhancer-binding factor 3 0 98.407 0.0061807 0 3908.5 3560.1 4982.6 4409.3 4088.3 3509.7 4466.6 5238.4 3285.5 5994.3 FALSE TRUE 3963.231059 3948.803757 3724.681006 4126.507233 4645.195675 4132.096016 5314.114033 4793.365223 3601.086955 4772.65837 0.830403258 0.827380351 0.78042062 0.864613998 0.973293145 0.865784998 1.113449491 1.004338641 0.75452435 1 12.22057736 -6.606525315 3.746654328 0.955862088 0.814585805 0.333015941 0.089389976 0.269631413 7.392251813 0.027533329 0.036747934 2.47E-07 6.606525315 -0.141276283 EATGLS(ph)PQAAQEK ddPTM_K562_Paclitaxel_30min_R1 2 EATGLSPQAAQEK 13 0 P17029;C9JRM9 P17029 ZKSCAN1 Zinc finger protein with KRAB and SCAN domains 1 1 EATGLS(1)PQAAQEK;EAT(0.003)GLS(0.997)PQAAQEK 193.47 4.53E-05 16877000 3888.9 2961.6 7182.2 4518.1 3232.6 2767.4 2715.6 4544.9 3058.2 5686.8 TRUE FALSE 3943.356598 3284.957503 5368.964782 4228.329288 3672.934848 3258.159534 3230.870924 4158.782377 3351.953774 4527.827038 0.870915908 0.725504193 1.185770732 0.933853977 0.811191509 0.719585688 0.713558821 0.91849409 0.740300755 1 12.14460313 -6.771210864 7.284209837 0.802736705 0.933055132 0.136358913 0.134878479 0.258286147 73.8600731 0.04186045 0.04978533 1.69E-07 6.771210864 0.130318427 EATNTTSEPSAPSQDLLDLSPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 EATNTTSEPSAPSQDLLDLSPSPR 24 0 I3NI44;J3KQU4;I3L4I4;O75674-2;O75674-3;O75674 I3NI44 TOM1L1 TOM1-like protein 1 1 EATNTTSEPSAPSQDLLDLS(0.019)PS(0.981)PR;EATNTTSEPSAPSQDLLDLS(0.143)PS(0.857)PR 204.35 1.87E-39 101256000 5519.5 5025.5 6866.1 5599.6 4957.7 4772.4 5386.1 6543.8 6016.4 7271.3 TRUE FALSE 5596.790029 5574.201085 5132.668136 5240.466719 5633.022675 5618.718132 6408.084358 5987.863345 6594.302102 5789.405069 0.966729735 0.962827962 0.886562276 0.905182252 0.972988175 0.970517362 1.106864053 1.034279563 1.139029317 1 12.49919939 -7.619018871 3.924291236 1.07269403 0.937862598 0.669334195 0.043629815 0.13281935 3.86879091 0.017365094 0.013173119 2.40E-08 7.619018871 -0.134831432 EAVAY(ph)AVNS(ph)WTT(ph)S(ph)ISGMLLK ddPTM_K562_Paclitaxel_30min_R1 1 EAVAYAVNSWTTSISGMLLK 20 0 A0A140T9T7;Q03518 A0A140T9T7 TAP1 Antigen peptide transporter 1 4 EAVAY(0.994)AVNS(0.51)WT(0.51)T(0.924)S(0.923)IS(0.138)GMLLK 50.787 0.021074 66928000 1303.6 1074.8 2403 1863.6 1255.8 1147.5 950.45 1599.8 1273.2 1937.2 TRUE FALSE 1321.854422 1192.150299 1796.33293 1744.077037 1426.861221 1350.993013 1130.792926 1463.887004 1395.496549 1542.397577 0.857012772 0.772920236 1.164636769 1.130757117 0.925093013 0.875904523 0.733139719 0.949098356 0.904758001 1 10.59095897 -6.994131154 24.71059731 0.881774283 0.985586733 0.09766605 0.124922555 312.6755443 1316494.967 0.04218173 0.047688822 1.01E-07 6.994131154 0.10381245 EAVIT(ph)PVASATQSVSR ddPTM_K562_Paclitaxel_30min_R1 3 EAVITPVASATQSVSR 16 0 P28749;P28749-2;H0YE05 P28749 RBL1 Retinoblastoma-like protein 1 1 EAVIT(0.991)PVAS(0.006)AT(0.003)QSVSR;EAVIT(0.969)PVAS(0.015)AT(0.015)QS(0.001)VSR;EAVIT(0.808)PVAS(0.095)AT(0.095)QS(0.001)VS(0.002)R 124.04 0.00020977 154961000 5829.5 5013.8 6533.2 4888 4982.9 4958.42 5228.44 5939.4 5243.6 7775.6 TRUE FALSE 5911.130986 5561.22364 4883.812858 4574.505558 5661.655341 5837.726167 6220.509196 5434.810897 5747.271209 6190.928452 0.95480525 0.898285884 0.788865983 0.738904608 0.914508282 0.942948414 1.004778079 0.877866856 0.928337527 1 12.59594007 -6.984827145 24.94343347 0.944549696 0.84269685 0.376942439 0.063830416 276.6014249 454716.7888 0.021287552 0.024129923 1.04E-07 6.984827145 -0.101852845 EAVREGS(ph)PANWK ddPTM_K562_Paclitaxel_30min_R1 1 EAVREGSPANWK 12 1 O96019-2;O96019 O96019-2 ACTL6A Actin-like protein 6A 1 EAVREGS(1)PANWK 108.66 0.0045001 138530000 3247.8 2894.9 5384.3 3731.5 2961.3 2309.6 2010.9 3824.8 3687.5 3814.9 TRUE FALSE 3293.27922 3210.974972 4024.966873 3492.178292 3364.679195 2719.175132 2392.457777 3499.859366 4041.700851 3037.421286 1.084235248 1.057138497 1.325126314 1.14971812 1.107742021 0.895224888 0.787660832 1.152246935 1.330635585 1 11.56863131 -7.012688422 19.00847275 1.024454325 1.155524349 0.125192167 0.150667776 56.96017922 85335.02951 0.052825888 0.055543579 9.71E-08 7.012688422 0.131070023 EAYPGDVFYLHSR ddPTM_K562_Paclitaxel_30min_R1 2 EAYPGDVFYLHSR 13 0 P25705-2;P25705-3;P25705 P25705-2 ATP5A1 "ATP synthase subunit alpha, mitochondrial" 0 ; 156.52 0.00019632 41891000 5755 6109.4 6762.9 5876.7 4947.2 5326.6 6901.5 8067 6513.5 9422.1 FALSE TRUE 5835.587756 6776.444953 5055.522253 5499.794765 5621.092397 6271.197721 8211.023597 7381.657997 7139.150778 7501.870848 0.777884327 0.903300669 0.673901531 0.733123094 0.749292078 0.835951171 1.09453012 0.983975617 0.951649385 1 12.87303471 -7.601415366 5.294182628 1.004954558 0.769990238 0.76092766 0.063654372 0.10545997 5.167234822 0.025919046 0.019936041 2.50E-08 7.601415366 -0.23496432 EAYPTPTKDLHQPSLSPAS(ph)PHSQGFER ddPTM_K562_Paclitaxel_30min_R1 1 EAYPTPTKDLHQPSLSPASPHSQGFER 27 1 Q9BZF1-3;Q9BZF1-2;Q9BZF1;F8VVD3;F8VVE7;F8VZ43;F8VQX7 Q9BZF1-3 OSBPL8 Oxysterol-binding protein-related protein 8;Oxysterol-binding protein 1 EAYPTPTKDLHQPS(0.004)LS(0.012)PAS(0.962)PHS(0.023)QGFER 82.988 3.87E-06 10729000 1131.4 1119.2 1687.4 1000.9 999.52 1037.7 765.17 1237.2 1503.4 1336.3 TRUE FALSE 1147.243091 1241.398041 1261.395001 936.7067539 1135.671546 1221.721525 910.357013 1132.092138 1647.808287 1063.961326 1.07827518 1.166769891 1.185564709 0.88039549 1.067399273 1.148276253 0.855629796 1.064035045 1.548748292 1 10.05523 -8.576757115 24.99994842 1.28504816 1.054106404 0.226888492 0.161233308 126.3865893 58641.83898 0.103746183 0.039212378 2.65E-09 8.576757115 -0.230941757 EAYVNANQARVS(ph)PSTSYTPSR ddPTM_K562_Paclitaxel_30min_R1 1 EAYVNANQARVSPSTSYTPSR 21 1 Q9BTE3;Q9BTE3-2 Q9BTE3 MCMBP Mini-chromosome maintenance complex-binding protein 1 EAYVNANQARVS(0.309)PS(0.309)T(0.309)S(0.066)Y(0.005)T(0.001)PSR 78.428 0.0019792 98142000 829.03 666.66 755.55 619.18 595.78 477.01 556.64 636.14 866.76 608.8 TRUE FALSE 840.6389778 739.4481933 564.802058 579.4685661 676.9353226 561.6010259 662.2595341 582.0959363 950.0161708 484.7262258 1.7342552 1.525496567 1.16519806 1.195455363 1.396531251 1.158594266 1.366254803 1.200875681 1.95990256 1 8.921026331 -5.529879554 4.413814561 1.309094414 1.699392841 0.238127683 0.24504769 0.256019308 12.27275329 0.06014625 0.207829493 2.95E-06 5.529879554 0.390298427 ECGKT(ph)FY(ph)Y(ph)NSSLTR ddPTM_K562_Paclitaxel_30min_R1 1 ECGKTFYYNSSLTR 14 1 P51504 P51504 ZNF80 Zinc finger protein 80 3 ECGKT(0.998)FY(0.976)Y(0.943)NS(0.051)S(0.017)LT(0.015)R 45.433 0.030846 0 361.49 250.44 182.43 245.91 339.21 111.36 219.27 311.04 297.63 267.95 TRUE FALSE 366.5519753 277.7838861 136.3732902 230.1384333 385.4161449 131.1081324 260.8753378 284.6152105 326.2186913 213.3416429 1.71814546 1.302061249 0.639224899 1.078731888 1.806567811 0.614545433 1.222805516 1.334081835 1.529090556 1 7.737021788 -8.169323726 5.659428134 1.32258776 1.174942204 0.007463133 0.383208709 1.094410439 53.17940338 0.187519003 0.106464626 6.77E-09 8.169323726 -0.147645556 ECNPPNS(ph)QPASYQR ddPTM_K562_Paclitaxel_30min_R1 2 ECNPPNSQPASYQR 14 0 E9PG73;Q13427;C9JM79;Q13427-2 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 ECNPPNS(0.993)QPAS(0.007)YQR;ECNPPNS(0.937)QPAS(0.063)YQR 142.4 1.42E-21 4557000 3226.5 2664.2 3368.8 2746 2197.4 2456.8 2658.4 3167.5 2465.1 3976.2 TRUE FALSE 3271.680955 2955.086366 2518.304775 2569.883851 2496.723082 2892.478985 3162.817522 2898.401104 2701.883869 3165.848257 1.033429491 0.933426408 0.795459722 0.811752062 0.788642689 0.913650545 0.999042678 0.915521171 0.853447054 1 11.62837639 -7.511236179 24.57732914 0.938017652 0.866553125 0.146352819 0.078531118 957.4388108 2021152.062 0.030937726 0.025779598 3.08E-08 7.511236179 -0.071464528 ECPSDECGAGVFMASHFDR ddPTM_K562_Paclitaxel_30min_R1 5 ECPSDECGAGVFMASHFDR 19 0 P62979;A0A2R8Y422 P62979 RPS27A Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a 0 ;;;; 154.48 1.55E-12 360891000 7353.8 6664.99 9679.1 7942.4 6908.63 6908.62 7204.85 8484.2 6862.89 9011.24 FALSE TRUE 7456.775888 7392.696148 7235.491495 7433.010013 7849.70237 8133.766755 8571.932676 7763.414253 7522.101249 7174.744342 1.039308933 1.030377641 1.008466804 1.035996498 1.094074157 1.133666423 1.19473702 1.08204751 1.048413838 1 12.80871171 -6.761045284 4.050872286 1.104326323 1.025968175 0.271884361 0.049054955 0.24765438 9.1627149 0.015696074 0.019292165 1.73E-07 6.761045284 -0.078358148 ECS(ph)VEKGTGDSLR ddPTM_K562_Paclitaxel_30min_R1 1 ECSVEKGTGDSLR 13 1 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 ECS(0.497)VEKGT(0.497)GDS(0.006)LR 174.47 0.00033816 13539000 2361.4 1893.4 4884.2 2682.6 1977.3 1841.9 1617.4 2897 1789.4 3668.1 TRUE FALSE 2394.466886 2100.127815 3651.123303 2510.550043 2246.641736 2168.535103 1924.293207 2650.881767 1961.279865 2920.539207 0.819871509 0.719089068 1.25015384 0.859618675 0.769255804 0.742511896 0.658882854 0.907668612 0.671547179 1 11.51201904 -6.52409387 23.41649765 0.7812516 0.933017012 0.130824807 0.158628117 33.60580692 647582.3588 0.04647114 0.060580589 2.99E-07 6.52409387 0.151765412 ECSTDLS(ph)I ddPTM_K562_Paclitaxel_30min_R1 1 ECSTDLSI 8 0 A0A087WT53;Q96QZ7-7;Q96QZ7-6;Q96QZ7-2;Q96QZ7 A0A087WT53 MAGI1 "Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1" 1 ECS(0.002)T(0.012)DLS(0.986)I 69.812 0.019194 7439300 3457 3346.9 4368.3 3895.8 3182.3 3206.4 2894.9 4185.8 2332.3 4883.4 TRUE FALSE 3505.408666 3712.32586 3265.468639 3645.940825 3615.783137 3775.01002 3444.192163 3830.190163 2556.327836 3888.160399 0.901559685 0.954776933 0.839849261 0.937703297 0.92994701 0.970898737 0.885815349 0.985090575 0.657464604 1 11.92487202 EDAEGVAAEEEQEGDS(ph)GEQETGATDARPR ddPTM_K562_Paclitaxel_30min_R1 1 EDAEGVAAEEEQEGDSGEQETGATDARPR 29 1 Q96KC8 Q96KC8 DNAJC1 DnaJ homolog subfamily C member 1 1 EDAEGVAAEEEQEGDS(1)GEQETGATDARPR 130.81 1.34E-18 30485000 622.54 641.67 1090.4 797.86 657.64 489.9 538.8 648 614.14 1062 TRUE FALSE 631.2574807 711.7297006 815.1150341 746.6888307 747.2217019 576.7768865 641.0344873 592.9483553 673.1308911 845.5638171 0.746552144 0.841722039 0.963989965 0.883066205 0.883696401 0.682121059 0.758114851 0.701246131 0.796073433 1 9.723769833 -7.231722847 24.71345423 0.767001697 0.869214373 0.118033624 0.095878434 960.7598614 799006.6369 0.03073346 0.030729346 5.87E-08 7.231722847 0.102212676 EDHLVYADEESSNITDGRIT(ph)PEPAVSNTEEPSTTSTASNYPDVLTRPSLHR ddPTM_K562_Paclitaxel_30min_R1 1 EDHLVYADEESSNITDGRITPEPAVSNTEEPSTTSTASNYPDVLTRPSLHR 51 2 P49790-2;P49790;P49790-3 P49790-2 NUP153 Nuclear pore complex protein Nup153 1 EDHLVY(0.001)ADEES(0.113)S(0.113)NIT(0.134)DGRIT(0.566)PEPAVS(0.033)NT(0.033)EEPS(0.002)T(0.002)T(0.001)STASNYPDVLTRPSLHR 72.766 1.81E-12 38290000 870.71 907.86 1135.1 823.97 827.06 653.02 1151 1714.2 585.44 1844.1 TRUE FALSE 882.9026264 1006.983225 848.5299663 771.1242522 939.7195742 768.8239281 1369.396241 1568.56801 641.6741278 1468.271408 0.601321133 0.685829077 0.577910842 0.525191901 0.640017622 0.523625213 0.932658795 1.068309307 0.437026918 1 10.51990296 -7.761945607 24.99999921 0.865191222 0.595028934 0.389838845 0.16367161 14.05073543 693825.469 0.063222496 0.045568198 1.73E-08 7.761945607 -0.270162289 EDKS(ph)PSEESAPTTSPESVSGSVPSSGSSGR ddPTM_K562_Paclitaxel_30min_R1 1 EDKSPSEESAPTTSPESVSGSVPSSGSSGR 30 1 A0A494C0B4;P54725-2;P54725-3;P54725 A0A494C0B4 RAD23A UV excision repair protein RAD23 homolog A 1 EDKS(0.729)PS(0.121)EES(0.121)APT(0.024)T(0.005)S(0.001)PESVSGSVPSSGSSGR 56.952 0.00146 9411200 343.66 415.52 501.09 396.25 313.88 405.68 354.42 495.16 158.18 521.57 TRUE FALSE 348.4723003 460.8878788 374.5836321 370.8362985 356.63577 477.621652 421.6693448 453.0930673 173.3738958 415.2737477 0.839138766 1.109841114 0.902016162 0.892992395 0.858796811 1.150136879 1.015400918 1.091070817 0.417493031 1 8.697918862 -8.733359639 24.99999919 0.708745228 0.983578877 0.301812515 0.166493339 210.113805 187069.6953 0.105589194 0.03989124 1.85E-09 8.733359639 0.27483365 EDKSPSEESAPTT(ph)SPESVSGSVPSSGSSGR ddPTM_K562_Paclitaxel_30min_R1 1 EDKSPSEESAPTTSPESVSGSVPSSGSSGR 30 1 A0A494C0B4;P54725-2;P54725-3;P54725 A0A494C0B4 RAD23A UV excision repair protein RAD23 homolog A 1 EDKSPSEESAPT(0.009)T(0.494)S(0.494)PES(0.001)VS(0.001)GSVPSSGSSGR 110.07 2.16E-09 12330000 979.26 807.07 2036 1125.2 946.1 801.81 855.09 1141.8 664.15 1787.2 TRUE FALSE 992.9726613 895.1886319 1521.986619 1053.034708 1074.974838 943.9997455 1017.338864 1044.796963 727.944575 1422.967659 0.697818151 0.629099773 1.069586234 0.740027155 0.755445727 0.663402109 0.714941662 0.734238025 0.511567899 1 10.47468716 -6.808125181 3.027915191 0.709127032 0.795365047 0.024649078 0.155497344 0.83581735 15.64719214 0.049653232 0.060187735 1.56E-07 6.808125181 0.086238015 EDMEY(ph)IGLDSGRIRT(ph)RR ddPTM_K562_Paclitaxel_30min_R1 1 EDMEYIGLDSGRIRTRR 17 3 Q7Z460-4 Q7Z460-4 CLASP1 CLIP-associating protein 1 2 EDMEY(0.997)IGLDS(0.171)GRIRT(0.832)RR 52.254 0.03035 25830000 150.05 185.39 231.08 217.41 186.09 0 46.719 68.325 238.23 225.3 TRUE FALSE 152.1511629 205.6315071 172.740996 203.4662957 211.4386085 0 55.58368636 62.52036478 261.1130559 179.3837363 0.848188169 1.146321909 0.962969105 1.134251632 1.178694417 0 0.309859118 0.348528613 1.455611647 1 7.486905285 -7.211729201 24.99838968 0.562522791 1.058601159 0.229919069 0.386822749 503.3583351 253130.1644 0.128370496 0.128370312 6.14E-08 7.211729201 0.496078368 EDNS(ph)EGEEILEEVGGDLEEEDDHHMEFCR ddPTM_K562_Paclitaxel_30min_R1 2 EDNSEGEEILEEVGGDLEEEDDHHMEFCR 29 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8YDJ9;A0A2R8Y425;A0A2R8Y445;A0A2R8Y8C1;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR;EDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR 129.23 1.43E-15 24788000 495.7 595.57 552.32 627.23 446.02 618.15 600.55 843.25 608.76 864.12 TRUE FALSE 502.6413294 660.5963467 412.879985 587.0022752 506.7754752 727.7702232 714.5012274 771.6106491 667.234118 688.0118697 0.730570723 0.960152544 0.600105904 0.853186262 0.736579553 1.057787308 1.038501309 1.121507758 0.969800301 1 9.426289644 -7.265679698 24.6482609 1.045174957 0.780846088 0.658729348 0.093963019 178.8960721 1039889.204 0.030874466 0.028200443 5.42E-08 7.265679698 -0.264328869 EDPQARPLEGSSSEDSPPEGQAPPS(ph)HSPR ddPTM_K562_Paclitaxel_30min_R1 2 EDPQARPLEGSSSEDSPPEGQAPPSHSPR 29 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 EDPQARPLEGSSSEDS(0.004)PPEGQAPPS(0.783)HS(0.213)PR;EDPQARPLEGS(0.003)S(0.003)S(0.003)EDS(0.019)PPEGQAPPS(0.732)HS(0.24)PR 69.874 0.00028295 23525000 455.35 354.56 469.76 404.21 463.16 446.16 403.15 501.35 422.24 466.88 TRUE FALSE 461.7263049 393.2720598 351.1632781 378.2857798 526.2502334 525.2802116 479.6456079 458.7571882 462.7980386 371.7295997 1.242102607 1.057951963 0.944673974 1.01763696 1.415680198 1.413070716 1.290307816 1.234115305 1.244985707 1 8.53810976 -6.747036396 24.9996859 1.28659866 1.056408695 0.358959441 0.129525477 236.5655469 410612.0469 0.038678251 0.049704705 1.79E-07 6.747036396 -0.230189965 EDPQARPLEGSSSEDSPPEGQAPPSHS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 EDPQARPLEGSSSEDSPPEGQAPPSHSPR 29 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 EDPQARPLEGSSSEDSPPEGQAPPS(0.026)HS(0.974)PR 115.37 3.36E-17 0 190.38 329.17 316.49 332.73 384.48 447.48 362.24 293.18 272.58 362.07 TRUE FALSE 193.0459074 365.1098938 236.5881852 311.390187 436.8526853 526.8342951 430.973149 268.272529 298.7625269 288.2799353 0.669647394 1.266511641 0.820689047 1.080166009 1.51537666 1.827509412 1.494981427 0.930597299 1.036362543 1 8.171326616 -6.56993719 6.540305743 1.332124774 0.952736007 0.251951031 0.293391343 0.291996101 29.69981862 0.094109919 0.122654698 2.69E-07 6.56993719 -0.379388768 EDQTEYLEER ddPTM_K562_Paclitaxel_30min_R1 1 EDQTEYLEER 10 0 P08238;Q58FF7;G3V2J8;Q58FF6;P07900;P07900-2 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AB4P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-alpha 0 121.29 0.016722 49056000 972.52 748.57 935.03 999.35 822.75 775.9 742.58 1175.6 589.67 1129.8 FALSE TRUE 986.1382805 830.3014041 698.9701122 935.2561639 934.8224793 913.4949708 883.4806785 1075.725442 646.3104382 899.5461398 1.096262033 0.923022586 0.777025303 1.039697824 1.039215709 1.015506521 0.982140481 1.195853547 0.718485033 1 9.813053472 -5.245506177 23.1327194 0.972571265 1.0962623 0.082136317 0.129128962 3037.619002 4409982.049 0.031459768 0.697458629 5.68E-06 5.245506177 0.123691035 EDQTEYLEERR ddPTM_K562_Paclitaxel_30min_R1 2 EDQTEYLEERR 11 1 P08238;Q58FF7;G3V2J8;P07900;P07900-2 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AA1 Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Heat shock protein HSP 90-alpha 0 ; 153.74 0.00090712 58030000 3469.2 3252.3 4737.8 4140.2 3504.5 3096.4 3254.2 4082.5 2582.86 4543.5 FALSE TRUE 3517.779503 3607.397113 3541.683794 3874.666103 3981.872232 3645.503064 3871.667462 3735.666143 2830.955244 3617.532206 0.972425207 0.997198341 0.979033107 1.071079919 1.100715075 1.007732027 1.070251 1.032655946 0.782565319 1 11.82079015 -8.726235385 24.91426139 0.891282663 1.030642788 0.434151943 0.06281191 129.7174669 91802.76276 0.041193523 0.015568316 1.88E-09 8.726235385 0.139360126 EDS(ph)CTAS(ph)SKNY(ph)KNAS(ph)GVVNS(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 1 EDSCTASSKNYKNASGVVNSSPR 23 2 A0A3B3ITD2;Q8N5G2 A0A3B3ITD2 TMEM57 Macoilin 5 EDS(0.87)CT(0.209)AS(0.515)S(0.515)KNY(0.898)KNAS(0.976)GVVNS(0.508)S(0.508)PR 50.883 0.015128 6445000 0 0 0 0 64.705 0 0 0 0 0 TRUE FALSE 0 0 0 0 73.51891646 0 0 0 0 0 0 EDS(ph)RGSLIPEGATGFPDQGNTGENTR ddPTM_K562_Paclitaxel_30min_R1 2 EDSRGSLIPEGATGFPDQGNTGENTR 26 1 A0A0J9YW64;A6NIW2;Q5JSL3 A0A0J9YW64 DOCK11 Dedicator of cytokinesis protein 11 1 EDS(0.774)RGS(0.226)LIPEGATGFPDQGNTGENTR;EDS(0.498)RGS(0.498)LIPEGAT(0.004)GFPDQGNTGENTR 73.788 0.00018075 20960400 859.98 1010.38 1384.68 957.54 755.87 752.88 822.78 878.96 913.77 1201.92 TRUE FALSE 872.0223733 1120.696705 1035.100408 896.1276702 858.832291 886.392697 978.8982098 804.2868617 1001.541691 956.9680443 0.911234579 1.171091043 1.08164574 0.936423819 0.897451379 0.926251093 1.022916299 0.840453207 1.046577989 1 9.90232694 -6.263212653 24.58816116 0.945720552 1.066300518 0.235331761 0.082593134 147.8180243 2049655.46 0.021801077 0.034285537 5.45E-07 6.263212653 0.120579966 EDSGLFS(ph)PIR ddPTM_K562_Paclitaxel_30min_R1 1 EDSGLFSPIR 10 0 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 EDS(0.002)GLFS(0.998)PIR 95.618 0.012903 2114900 886.25 1037 1202.6 1379.6 784.96 804.5 858.46 977.42 784.17 1171.7 TRUE FALSE 898.6602343 1150.223167 898.9887564 1291.118631 891.8848415 947.1667793 1021.348304 894.3820701 859.4930323 932.9068968 0.963290375 1.232945293 0.963642524 1.383973723 0.956027707 1.015285429 1.094801965 0.958704532 0.921306333 1 9.865589299 EDSRGS(ph)LIPEGATGFPDQGNTGENTR ddPTM_K562_Paclitaxel_30min_R1 1 EDSRGSLIPEGATGFPDQGNTGENTR 26 1 A0A0J9YW64;A6NIW2;Q5JSL3 A0A0J9YW64 DOCK11 Dedicator of cytokinesis protein 11 1 EDS(0.408)RGS(0.592)LIPEGATGFPDQGNTGENTR 106.19 8.51E-07 58727000 548.45 557.21 755.41 520.02 521.62 600.87 503.72 619.05 687.3 772.73 TRUE FALSE 556.1299921 618.0480722 564.6974027 486.6682447 592.6734751 707.4258579 599.2982404 566.4578385 753.3182359 615.2472018 0.903913078 1.004552431 0.91783823 0.791012528 0.963309501 1.149823771 0.974077149 0.920699577 1.224415542 1 9.265022381 -7.006855709 24.96582253 1.045275458 0.90804134 0.359131286 0.094224673 385.059 1402240.781 0.029854595 0.032623462 9.84E-08 7.006855709 -0.137234118 EDST(ph)KY(ph)AELVLERALDRER ddPTM_K562_Paclitaxel_30min_R1 1 EDSTKYAELVLERALDRER 19 3 A0A087X1P2;Q9UN70-2;Q9UN70 A0A087X1P2 PCDHGC3 Protocadherin gamma-C3 2 EDS(0.641)T(0.679)KY(0.679)AELVLERALDRER 51.029 0.026865 24086000 3298.6 3205.7 3789.5 3164.8 2718.7 2885.9 3077.7 3417.8 2540.5 4324.5 TRUE FALSE 3344.790577 3555.709167 2832.793857 2961.823893 3089.032968 3397.673845 3661.677508 3127.436557 2784.526376 3443.164526 0.971429205 1.032686396 0.82272974 0.860203999 0.897149394 0.986788119 1.063462835 0.908302967 0.808711392 1 11.7495194 -7.247818208 24.3064392 0.954597611 0.914900908 0.04712871 0.082003957 2134.784384 3809439.234 0.029508073 0.029339915 5.65E-08 7.247818208 -0.039696703 EDVEVAES(ph)PLR ddPTM_K562_Paclitaxel_30min_R1 1 EDVEVAESPLR 11 0 Q99567;J3KMX1 Q99567 NUP88 Nuclear pore complex protein Nup88 1 EDVEVAES(1)PLR 127.02 0.001502 19404000 952.49 1185.1 1321.2 1494.1 1072.9 1469.1 1322.5 1571.1 1032.1 1993.3 TRUE FALSE 965.8277987 1314.493226 987.6467196 1398.275113 1219.047144 1729.624258 1573.437471 1437.625249 1131.237817 1587.064366 0.608562463 0.828254514 0.622310437 0.881044993 0.768114495 1.089826156 0.991413773 0.905839284 0.71278635 1 10.63214492 -6.610203012 1.649888902 0.92963742 0.700775731 0.417283469 0.118109373 0.384981333 2.145079077 0.041127942 0.063072936 2.45E-07 6.610203012 -0.228861689 EDY(ph)IET(ph)DDKK ddPTM_K562_Paclitaxel_30min_R1 1 EDYIETDDKK 10 1 Q8IWU2 Q8IWU2 LMTK2 Serine/threonine-protein kinase LMTK2 2 EDY(1)IET(1)DDKK 46.955 0.029471 41114000 256.09 160.91 513.5 424.76 290.12 256.99 150.03 220.46 301.85 142.98 TRUE FALSE 259.6760501 178.478698 383.8605741 397.5177948 329.6392558 302.5635682 178.4974093 201.7305469 330.8440412 113.8405975 2.281049606 1.56779481 3.371912854 3.491880783 2.895621272 2.657782678 1.567959174 1.772043992 2.906204363 1 6.830871329 -9.786054322 0.416248144 0.839902806 2.683679289 0.318791383 0.662070407 4.370618242 1.17606506 2.248063769 0.496331738 1.64E-10 9.786054322 1.843776483 EEAS(ph)DDDMEGDEAVVR ddPTM_K562_Paclitaxel_30min_R1 8 EEASDDDMEGDEAVVR 16 0 A0A494C1A5;O75643;O75643-2 A0A494C1A5 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 1 EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR;EEAS(1)DDDMEGDEAVVR 262.73 3.52E-94 671664500 17919 17567.2 27100.5 21498.4 19491.5 16394.5 18505.1 23824 13791.21 26849.5 TRUE FALSE 18169.92128 19485.2463 20258.6436 20119.58885 22146.57229 19301.83438 22016.34612 21800.0025 15115.91734 21377.55716 0.849953114 0.911481427 0.947659428 0.941154721 1.035973013 0.902901779 1.029881289 1.01976116 0.707092828 1 14.38380938 -5.348517028 1.751932373 0.953743423 0.825753353 0.09741342 0.090907974 1.731194695 6.148652857 0.024394392 0.348976251 4.48E-06 5.348517028 -0.12799007 EEASLLSHS(ph)PGTSNQSQPCSPKPIR ddPTM_K562_Paclitaxel_30min_R1 1 EEASLLSHSPGTSNQSQPCSPKPIR 25 1 Q9H4Z3 Q9H4Z3 PCIF1 Phosphorylated CTD-interacting factor 1 1 EEASLLS(0.001)HS(0.716)PGT(0.034)S(0.034)NQS(0.039)QPCS(0.176)PKPIR 72.145 0.00040944 13216000 1169.5 826.12 1857.9 1255.6 836.67 854.2 1043.8 1307.2 940.69 1683 TRUE FALSE 1185.876608 916.3185754 1388.850167 1175.071436 950.6386189 1005.680376 1241.855601 1196.145201 1031.047478 1340.003676 0.884980116 0.683817956 1.036452505 0.876916576 0.709429859 0.750505685 0.926755369 0.892643223 0.769436305 1 10.38802124 -11.62889677 3.349183409 1.009297944 0.837333352 0.183597631 0.103255167 162882143.3 145537282.8 12780033.75 0.026089452 2.35E-12 11.62889677 -0.171964592 EEASLLSHSPGTSNQSQPCS(ph)PKPIR ddPTM_K562_Paclitaxel_30min_R1 1 EEASLLSHSPGTSNQSQPCSPKPIR 25 1 Q9H4Z3 Q9H4Z3 PCIF1 Phosphorylated CTD-interacting factor 1 1 EEASLLS(0.003)HS(0.116)PGT(0.116)S(0.143)NQS(0.019)QPCS(0.602)PKPIR 65.598 0.0017039 11426000 929.92 816.19 1969.1 1334.7 1315.7 973.12 920.04 1238.1 960 1491.2 TRUE FALSE 942.941749 905.3043844 1471.976351 1249.098316 1494.920615 1145.689169 1094.612787 1132.915677 1052.212289 1187.292621 0.794194904 0.762494745 1.23977554 1.052055991 1.2591004 0.964959394 0.921940192 0.954200891 0.886228273 1 10.21345983 -11.20462293 15.5528116 1 0.98998171 0 0.156862565 0 0 0.16198193 0.039286389 6.24E-12 11.20462293 -0.01001829 EEATYGVWAERDS(ph)DDERPSFGGK ddPTM_K562_Paclitaxel_30min_R1 2 EEATYGVWAERDSDDERPSFGGK 23 2 Q9UBB9;F6UKU9;F6SQZ1;F6XM96 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 1 EEAT(0.008)Y(0.009)GVWAERDS(0.983)DDERPSFGGK;EEAT(0.001)Y(0.002)GVWAERDS(0.997)DDERPSFGGK 56.553 0.0099485 63680000 2423.6 1955.77 4238.4 2347.1 1944.03 1880.32 2066.2 3136.7 1773.88 4365.6 TRUE FALSE 2457.537877 2169.307583 3168.3635 2196.567511 2208.839799 2213.768351 2458.250664 2870.217756 1944.2691 3475.888324 0.707024406 0.624101634 0.911526265 0.631944213 0.635474904 0.63689283 0.707229472 0.825750855 0.559358909 1 11.76316602 -11.74571855 2.823270701 1.058044546 0.696789136 0.461503464 0.09933747 55218346.36 47362208.43 22447285.02 0.024131532 1.80E-12 11.74571855 -0.36125541 EEDEENDNDNES(ph)DHDEADS ddPTM_K562_Paclitaxel_30min_R1 1 EEDEENDNDNESDHDEADS 19 0 H0YBP8;Q9NRG0 H0YBP8 CHRAC1 Chromatin accessibility complex protein 1 1 EEDEENDNDNES(0.973)DHDEADS(0.027) 83.894 0.0047222 3347000 712.06 667.4 1111.1 952.46 1166.2 713.34 749.31 1045.1 705.05 1309.6 TRUE FALSE 722.0310369 740.268989 830.5890631 891.3734787 1325.056184 839.8408332 891.4876608 956.3122317 772.7732027 1042.702801 0.692461012 0.709952048 0.796573158 0.854868211 1.270789896 0.805446031 0.854977717 0.917147466 0.741125086 1 10.02611229 -6.116359872 2.548904266 0.924935593 0.706014985 0.307523843 0.135001533 0.370304603 4.67164572 0.040117323 0.083815167 7.65E-07 6.116359872 -0.218920608 EEDEPEERS(ph)GDETPGSEVPGDK ddPTM_K562_Paclitaxel_30min_R1 2 EEDEPEERSGDETPGSEVPGDK 22 1 H3BQZ7;Q1KMD3 H3BQZ7 HNRNPUL2-BSCL2;HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 EEDEPEERS(0.815)GDET(0.009)PGS(0.176)EVPGDK;EEDEPEERS(0.999)GDETPGS(0.001)EVPGDK 78.674 0.0012483 43971000 2834.3 2654.8 6158.7 3937 2864.9 2186.77 2406.95 3915 1943.11 5482.9 TRUE FALSE 2873.988945 2944.660042 4603.860015 3684.498441 3255.147883 2574.562956 2863.656197 3582.396313 2129.754398 4365.48197 0.658344019 0.674532632 1.054605207 0.844007252 0.745656014 0.589754573 0.655977099 0.82061874 0.487862374 1 12.09192523 -5.5579484 24.99768513 0.766019784 0.662388103 0.063862324 0.163729282 496.5451109 353936.1745 0.042597241 0.112702569 2.77E-06 5.5579484 -0.103631681 EEDGADAS(ph)EEDLTR ddPTM_K562_Paclitaxel_30min_R1 2 EEDGADASEEDLTR 14 0 E5RHA3;Q86X53 E5RHA3 ERICH1 Glutamate-rich protein 1 1 EEDGADAS(0.99)EEDLT(0.01)R;EEDGADAS(1)EEDLTR 184.87 2.06E-06 69449000 2897.1 3066.6 4783.9 3522 3185.4 3407.1 3433.5 4618.9 2442.5 4402.8 TRUE FALSE 2937.668338 3401.421759 3576.145278 3296.114684 3619.305409 4011.301347 4084.988701 4226.495615 2677.113038 3505.506943 0.838015267 0.970308093 1.020150676 0.940267624 1.03246277 1.144285666 1.165306122 1.205673155 0.763687844 1 11.77540738 -4.33496142 0.642327452 1.063686142 0.266540703 0.196246948 0.119542269 14.7977627 1.912697618 0.052830473 11.34044522 4.62E-05 4.33496142 -0.797145439 EEEEGIS(ph)QES(ph)S(ph)EEEQ ddPTM_K562_Paclitaxel_30min_R1 1 EEEEGISQESSEEEQ 15 0 P17096;P17096-2 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 3 EEEEGIS(1)QES(1)S(1)EEEQ 91.032 0.011884 4518500 1324.3 1094.9 1812.2 1703.1 1239.9 1153.9 1165.4 1702.1 1083.2 1692.9 TRUE FALSE 1342.844286 1214.444885 1354.687697 1593.870789 1408.795372 1358.527963 1386.528566 1557.495981 1187.2462 1347.886051 0.996259502 0.900999668 1.005046158 1.182496687 1.045188776 1.007895261 1.028668978 1.155510126 0.880820897 1 10.39648282 -5.996732589 24.58999965 1.051021081 0.949727869 0.169704051 0.081675056 121.9985882 918095.1732 0.020601383 0.042536969 1.01E-06 5.996732589 -0.101293213 EEEEGISQES(ph)S(ph)EEEQ ddPTM_K562_Paclitaxel_30min_R1 2 EEEEGISQESSEEEQ 15 0 P17096;P17096-2 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 2 EEEEGISQES(1)S(1)EEEQ;EEEEGIS(0.008)QES(0.993)S(0.999)EEEQ 130.72 0.0001919 173426000 16165.1 15569.5 23259.1 20216 16011.1 15596.9 15264.8 20798.9 12518.7 24025.2 TRUE FALSE 16391.46127 17269.43066 17387.05254 18919.43624 18192.08289 18362.79122 18161.21611 19031.90362 13721.17707 19128.85105 0.856897324 0.902794978 0.908943903 0.989052411 0.951028519 0.959952648 0.949414895 0.994931874 0.717302729 1 14.2234626 -5.531901315 1.83414998 0.938751056 0.853783133 0.088678207 0.077320279 1.245542353 6.390951893 0.020843406 0.152246983 2.94E-06 5.531901315 -0.084967923 EEEEGISQES(ph)SEEEQ ddPTM_K562_Paclitaxel_30min_R1 2 EEEEGISQESSEEEQ 15 0 P17096;P17096-2 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 EEEEGISQES(0.826)S(0.174)EEEQ;EEEEGISQES(0.979)S(0.021)EEEQ 258.39 1.79E-73 47510000 10648.5 10816.6 14573.8 12119.8 10837.2 10442.3 10623.3 13199.2 6209.2 15319.6 TRUE FALSE 10797.61185 11997.59297 10894.46394 11342.49027 12313.41012 12294.09529 12639.01572 12077.84557 6805.621403 12197.45711 0.885234665 0.983614278 0.893175015 0.929906141 1.009506326 1.007922813 1.036200874 0.990193732 0.557954116 1 13.57429279 EEEPQLRLT(ph)LTALDGGSPPRS(ph)GT(ph)AQVR ddPTM_K562_Paclitaxel_30min_R1 1 EEEPQLRLTLTALDGGSPPRSGTAQVR 27 2 Q9NRJ7 Q9NRJ7 PCDHB16 Protocadherin beta-16 3 EEEPQLRLT(0.754)LT(0.246)ALDGGS(0.145)PPRS(0.928)GT(0.928)AQVR 57.068 0.0021419 16946000 465.69 554.96 427.25 541.72 307.97 463.11 748.3 907.96 669.82 926.11 TRUE FALSE 472.2110968 615.5524096 319.3854533 506.9765038 349.920728 545.2360561 890.2860186 830.8231307 734.1592038 737.3682736 0.640400616 0.83479644 0.433142386 0.687548572 0.474553545 0.739435199 1.207383136 1.126741088 0.995647942 1 9.526241533 -7.633671861 4.965633841 1.090618328 0.619325886 0.776482711 0.118905295 0.095388259 3.768907668 0.046096834 0.035200635 2.32E-08 7.633671861 -0.471292442 EEEPQLRLTLTALDGGSPPRS(ph)GTAQVR ddPTM_K562_Paclitaxel_30min_R1 1 EEEPQLRLTLTALDGGSPPRSGTAQVR 27 2 Q9NRJ7 Q9NRJ7 PCDHB16 Protocadherin beta-16 1 EEEPQLRLT(0.001)LTALDGGS(0.033)PPRS(0.483)GT(0.483)AQVR 47.159 0.015896 14204000 1149.8 973.23 1645.4 1047.9 716.45 760.2 613.03 1094.8 1383.5 1509.3 TRUE FALSE 1165.900747 1079.490543 1229.99842 980.6923842 814.0426196 895.0107963 729.3492423 1001.789906 1516.391357 1201.703832 0.970206399 0.898299992 1.023545393 0.816084927 0.677407027 0.74478484 0.606929281 0.833641268 1.261867789 1 10.23086566 -11.20483774 8.155018103 1.000000047 0.855852749 0.040257578 0.177781956 1.60E-07 1.57E-08 0.180832233 0.043858245 6.24E-12 11.20483774 -0.144147298 EEGAAPS(ph)PTHVAELATMEVESAR ddPTM_K562_Paclitaxel_30min_R1 1 EEGAAPSPTHVAELATMEVESAR 23 0 Q9NRS6 Q9NRS6 SNX15 Sorting nexin-15 1 EEGAAPS(0.908)PT(0.092)HVAELATMEVESAR 77.51 0.0006778 3350900 874.25 546.21 1082.3 841.04 749.27 905.45 959.79 1003 580.43 1326.6 TRUE FALSE 886.4921973 605.847055 809.0599793 787.0994588 851.3332592 1066.018844 1141.905142 917.7888895 636.1828949 1056.238192 0.839291936 0.573589423 0.765982508 0.74519125 0.806004996 1.009259893 1.081105712 0.868922272 0.602310066 1 10.0447195 -6.973424275 3.505724812 0.914861736 0.72303891 0.284451149 0.13511617 0.316976062 8.262297035 0.046738029 0.051581139 1.06E-07 6.973424275 -0.191822826 EEGAQTLEEDRAQT(ph)PHEDGGPQPHR ddPTM_K562_Paclitaxel_30min_R1 2 EEGAQTLEEDRAQTPHEDGGPQPHR 25 1 Q9BRZ2 Q9BRZ2 TRIM56 E3 ubiquitin-protein ligase TRIM56 1 EEGAQT(0.006)LEEDRAQT(0.994)PHEDGGPQPHR;EEGAQT(0.005)LEEDRAQT(0.995)PHEDGGPQPHR 70.679 0.0014664 187187000 4597.1 4295.4 5296.1 4940.9 4288.9 3746.6 3852.1 5140.1 2978.6 6171.3 TRUE FALSE 4661.473583 4764.386298 3959.034054 4624.012789 4873.120792 4411.006905 4583.015866 4703.416422 3264.707839 4913.585673 0.948690812 0.969635337 0.805732171 0.94106689 0.991764694 0.897716494 0.932723305 0.957226908 0.664424731 1 12.2625605 EEGS(ph)DIEDEDMEELLNDTR ddPTM_K562_Paclitaxel_30min_R1 2 EEGSDIEDEDMEELLNDTR 19 0 F5H5U2;Q8NHQ9-2;Q8NHQ9 F5H5U2 DDX55 ATP-dependent RNA helicase DDX55 1 EEGS(1)DIEDEDMEELLNDTR;EEGS(1)DIEDEDMEELLNDTR 215.49 3.57E-29 69966000 3038.9 3226.9 4028.4 3098.6 2786.9 2654 3022.3 3564.2 2871.7 3687.3 TRUE FALSE 3081.453976 3579.223855 3011.380597 2899.869665 3166.522963 3124.649636 3595.765648 3261.398963 3147.539616 2935.826236 1.049603665 1.219153849 1.025735297 0.987752487 1.07857983 1.064316954 1.224788308 1.110896457 1.07211373 1 11.51955087 EEIQETQT(ph)PTHSR ddPTM_K562_Paclitaxel_30min_R1 1 EEIQETQTPTHSR 13 0 H7BZL0;Q9BYG3 H7BZL0 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 1 EEIQET(0.034)QT(0.853)PT(0.113)HSR 135.86 3.21E-15 0 858.42 676.97 789.86 893.8 450.73 574.03 630.93 748.7 521.44 969.95 TRUE FALSE 870.4405285 750.883874 590.4500741 836.4756685 512.1270569 675.8261607 750.6456738 685.0932618 571.5266419 772.2736576 1.1271141 0.972302844 0.764560682 1.083133757 0.663141947 0.875112279 0.971994404 0.887112043 0.74005715 1 9.592968351 -5.41568035 3.439051788 0.872203156 1.126386128 0.29504592 0.120398606 0.311069176 6.138503786 0.029386991 0.158893231 3.84E-06 5.41568035 0.254182972 EELMSS(ph)DLEETAGSTSIPK ddPTM_K562_Paclitaxel_30min_R1 3 EELMSSDLEETAGSTSIPK 19 0 O00567 O00567 NOP56 Nucleolar protein 56 1 EELMS(0.23)S(0.77)DLEETAGSTSIPK;EELMS(0.056)S(0.944)DLEETAGSTSIPK;EELMS(0.039)S(0.961)DLEETAGSTSIPK 274.23 7.55E-120 75082000 6502.3 5327.9 12235.9 7431.5 4948.36 4323.3 4760 7569 4202.36 9638.7 TRUE FALSE 6593.352261 5909.61814 9146.795713 6954.876852 5622.410408 5089.976553 5663.185151 6925.966206 4606.015455 7674.327649 0.859143962 0.770050278 1.191869325 0.90625227 0.732625797 0.66324723 0.737938932 0.90248508 0.600184885 1 12.90582465 -6.687564315 5.651607557 0.760874678 0.942110221 0.220363117 0.146032929 0.293193649 16.3545531 0.043210319 0.055641369 2.05E-07 6.687564315 0.181235544 EELS(ph)MGQPPASLGTLLR ddPTM_K562_Paclitaxel_30min_R1 1 EELSMGQPPASLGTLLR 17 0 Q96S37-3;Q96S37-2;Q96S37-4;Q96S37 Q96S37-3 SLC22A12 Solute carrier family 22 member 12 1 EELS(1)MGQPPASLGTLLR 66.12 0.02909 12511000 554.94 484.54 654.95 636.76 499.1 533.54 423.48 498.27 549.93 890.54 TRUE FALSE 562.7108721 537.4437158 489.5997722 595.9210636 567.0858698 628.1558277 503.8331193 455.9388534 602.7532337 709.0474592 0.793615244 0.757979891 0.690503528 0.840452999 0.79978549 0.885915068 0.710577427 0.643030093 0.850088701 1 9.469738385 -9.010552975 24.28473494 1.000000011 0.766997255 0.532034586 0.067678974 269.2346998 619570.1928 0.068565367 0.017703502 9.76E-10 9.010552975 -0.233002756 EEMGHLMQAEDTSHHTAPMSVPEPHAATAS(ph)PPTDGTTR ddPTM_K562_Paclitaxel_30min_R1 1 EEMGHLMQAEDTSHHTAPMSVPEPHAATASPPTDGTTR 38 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 EEMGHLMQAEDTSHHT(0.002)APMS(0.018)VPEPHAAT(0.063)AS(0.318)PPT(0.141)DGT(0.318)T(0.141)R 71.682 6.21E-07 60417000 1205.9 1143.9 1232.6 1254.6 1299.5 1113 1075 1435.4 771.08 1574.6 TRUE FALSE 1222.786321 1268.79487 921.4148854 1174.135571 1476.513901 1310.374923 1278.975638 1313.453811 845.1456793 1253.695656 0.975345424 1.012043764 0.734958984 0.936539555 1.177729135 1.04520975 1.020164369 1.047665599 0.674123481 1 10.29197145 -4.795356326 15.51438142 0.967498668 12.71937764 0 0.14268113 4654.828201 353299.8324 0.035307695 2246.619215 1.60E-05 4.795356326 11.75187897 EEPDSENIPQELLSNLGHPES(ph)PPR ddPTM_K562_Paclitaxel_30min_R1 2 EEPDSENIPQELLSNLGHPESPPR 24 0 D6RF40;D6RAG5;D6R9R7;A0A0A0MTL5;Q13309-2;Q13309 D6RF40 SKP2 S-phase kinase-associated protein 2 1 EEPDSENIPQELLS(0.258)NLGHPES(0.742)PPR;EEPDSENIPQELLS(0.01)NLGHPES(0.99)PPR 97.482 3.06E-05 12013900 2662 3286.9 4087.3 3992.6 3944.1 3027.7 3109.5 4139.9 2006.02 5689 TRUE FALSE 2699.276213 3645.774858 3055.410564 3736.532506 4481.353194 3564.620084 3699.511392 3788.189655 2198.707184 4529.578677 0.595922139 0.804881672 0.674546306 0.824918336 0.989353208 0.786965044 0.816745145 0.836322741 0.485410971 1 12.14516115 -4.553081826 1.074336105 0.809099059 7.89E-16 0.165453316 0.138905922 13.38329336 4.233933917 0.04237412 17.80748225 2.80E-05 4.553081826 -0.809099059 EEPGS(ph)PLSPAPR ddPTM_K562_Paclitaxel_30min_R1 2 EEPGSPLSPAPR 12 0 B2RBV5 B2RBV5 LOC93622 1 EEPGS(0.999)PLS(0.001)PAPR;EEPGS(0.996)PLS(0.004)PAPR 111.31 0.0055454 24822000 2202.33 2365.64 3183 2489.42 2043.81 1968.34 1783.27 2930.6 1470.52 3048.8 TRUE FALSE 2233.169415 2623.928575 2379.412283 2329.759743 2322.211524 2317.397462 2121.636173 2681.627238 1611.770016 2427.452886 0.919964061 1.080939033 0.98020946 0.959754876 0.956645353 0.954662179 0.874017446 1.104708253 0.663975818 1 11.24522758 -7.080075841 0.765630066 0.911085253 1.002183807 0.081643892 0.110574096 1.778304701 2.314799181 0.06780895 0.080382141 8.32E-08 7.080075841 0.091098554 EEPLDPEEAEGPLSLVTTANHS(ph)PDFDHDRDYEDEPVNEDME ddPTM_K562_Paclitaxel_30min_R1 1 EEPLDPEEAEGPLSLVTTANHSPDFDHDRDYEDEPVNEDME 41 1 H0Y882;A0A3B3IRW5;A0A0B4J2F3;A0A3B3IT66;C9J0F0;A0A3B3IUB6;A0A3B3IRS5;A0A3B3IST0;Q9H334-6;Q9H334-3;Q9H334-7;Q9H334;Q9H334-4;Q9H334-8 H0Y882 FOXP1 Forkhead box protein P1 1 EEPLDPEEAEGPLS(0.128)LVT(0.128)T(0.128)ANHS(0.449)PDFDHDRDY(0.168)EDEPVNEDME 56.729 2.63E-05 19971000 2624.9 2156.5 3020.8 2677.7 2277.8 1966.2 2472.4 2869.1 1852.4 2995.7 TRUE FALSE 2661.656699 2391.953963 2258.161679 2505.964307 2588.074923 2314.877963 2941.524993 2625.352047 2030.331297 2385.174696 1.115916877 1.002842252 0.946748967 1.05064183 1.08506724 0.970527638 1.23325348 1.100695916 0.851229598 1 11.21987922 -5.245599581 22.69037158 1.034686124 1.115917082 0.065301788 0.097109136 2689.521317 3852483.08 0.024475136 0.512482931 5.68E-06 5.245599581 0.081230958 EEPPPLT(ph)PPAR ddPTM_K562_Paclitaxel_30min_R1 2 EEPPPLTPPAR 11 0 Q9C0C2;E9PKE7;E9PKK0 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 EEPPPLT(1)PPAR;EEPPPLT(1)PPAR 118.5 0.0082123 49485000 7285.5 7073.9 6201.8 7224.4 6280.2 6917.7 7116.1 7478.1 8105.1 7935.6 TRUE FALSE 7387.519478 7846.252324 4636.078887 6761.059319 7135.669565 8144.456966 8466.342826 6842.788728 8883.63107 6318.320364 1.169222048 1.241825655 0.733751792 1.070072255 1.129361785 1.289022477 1.339967323 1.083007561 1.406011496 1 12.62532537 -6.990107152 3.377016329 1.235241646 1.045813939 0.187482443 0.165396144 0.387014724 9.310536063 0.055437532 0.060495058 1.02E-07 6.990107152 -0.189427707 EEPS(ph)QNDISPK ddPTM_K562_Paclitaxel_30min_R1 1 EEPSQNDISPK 11 0 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 EEPS(0.88)QNDIS(0.12)PK 103.43 0.0077271 38196000 3664.1 3062.5 7852.1 5149.4 3999.5 3121.6 2902 4814 3055.5 5999.2 TRUE FALSE 3715.408705 3396.874107 5869.740241 4819.140532 4544.299612 3675.171931 3452.639351 4405.020652 3348.994427 4776.559747 0.777841983 0.71115495 1.228863565 1.00891453 0.951375017 0.769418185 0.722829721 0.922216173 0.701131066 1 12.2217562 -7.251551725 23.74047797 0.81198946 0.943521301 0.114840579 0.153867207 741.5704104 1780526.902 0.05330062 0.052614281 5.60E-08 7.251551725 0.131531841 EEPSQNDIS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 EEPSQNDISPK 11 0 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 EEPS(0.014)QNDIS(0.986)PK 144.88 0.00037575 48546000 1920.4 1235.8 3642.5 2237.9 1378.8 1273.2 1204.1 2271.3 1390.2 2966.7 TRUE FALSE 1947.291525 1370.728823 2722.905825 2094.37111 1566.615903 1498.984143 1432.571689 2078.338888 1523.734922 2362.084912 0.824395226 0.580304635 1.152755268 0.886662076 0.663234372 0.634602142 0.60648611 0.879874757 0.645080502 1 11.20584511 -6.753284096 24.81694991 0.720439831 0.861815132 0.102984289 0.172855548 358.3375886 1090433.553 0.051566606 0.065391721 1.76E-07 6.753284096 0.141375302 EEPVS(ph)S(ph)GPEEAVGK ddPTM_K562_Paclitaxel_30min_R1 2 EEPVSSGPEEAVGK 14 0 O00567 O00567 NOP56 Nucleolar protein 56 2 EEPVS(1)S(1)GPEEAVGK;EEPVS(1)S(1)GPEEAVGK 125.33 0.0027062 35606000 11773.3 10761.4 23425 13848.4 9427.8 9553.2 9363.7 14327.7 8566 16680.5 TRUE FALSE 11938.16252 11936.36604 17511.06903 12960.22561 10712.02597 11247.32589 11140.41319 13110.47245 9388.802574 13281.00494 0.898889999 0.898754732 1.31850482 0.975846757 0.806567426 0.846873104 0.838823059 0.98715967 0.706934649 1 13.6970767 -6.547151462 9.403247081 0.864062657 1.044995006 0.259798926 0.134203325 0.376645971 136.5366512 0.039710603 0.051665078 2.84E-07 6.547151462 0.180932349 EEPVS(ph)SGPEEAVGK ddPTM_K562_Paclitaxel_30min_R1 1 EEPVSSGPEEAVGK 14 0 O00567 O00567 NOP56 Nucleolar protein 56 1 EEPVS(0.948)S(0.052)GPEEAVGK 148.89 4.47E-05 50735000 4508.8 3622.7 8346.4 5200.2 4122.2 3382.1 3485.9 5474 3121.9 6711 TRUE FALSE 4571.937111 4018.238637 6239.248093 4866.682447 4683.713429 3981.867948 4147.331327 5008.949532 3421.772444 5343.294516 0.855640111 0.752015189 1.16767812 0.910801834 0.876559099 0.745208398 0.776174945 0.937427184 0.64038627 1 12.38351382 -6.982834318 4.061080325 0.812598176 0.925450803 0.111270239 0.134266776 0.459205506 17.39013929 0.043636267 0.047868894 1.04E-07 6.982834318 0.112852626 EEPVSS(ph)GPEEAVGK ddPTM_K562_Paclitaxel_30min_R1 1 EEPVSSGPEEAVGK 14 0 O00567 O00567 NOP56 Nucleolar protein 56 1 EEPVS(0.023)S(0.977)GPEEAVGK 193.51 3.89E-07 46941000 3414.3 3036.6 6472.6 3949.1 3073.8 2403.2 2595.7 4156 2507.6 4590.3 TRUE FALSE 3462.110734 3368.146257 4838.512078 3695.822402 3492.5036 2829.373777 3088.220525 3802.921859 2748.466184 3654.79434 0.947279221 0.921569299 1.323880806 1.011225819 0.95559511 0.774154033 0.844977921 1.040529645 0.752016647 1 11.83557451 -6.833558888 3.263344121 0.88200437 1.063725606 0.265108613 0.13161622 0.330801861 7.081773574 0.043122241 0.051271319 1.47E-07 6.833558888 0.181721236 EEQGEKVSERPGKPR ddPTM_K562_Paclitaxel_30min_R1 1 EEQGEKVSERPGKPR 15 3 Q86V88-2 Q86V88-2 0 47.621 0.029813 42414000 854.53 715.42 599.72 839.03 952.83 829.65 1119.1 996.67 557.52 760.1 FALSE TRUE 866.4960565 793.531975 448.3132688 785.2183712 1082.621578 976.7767786 1331.443383 911.9966625 611.0722871 605.1912028 1.431772393 1.311208708 0.740779553 1.297471555 1.788891796 1.613996988 2.20003757 1.506956245 1.009717729 1 9.241247206 -6.559552692 8.323321231 1.581233246 1.150302475 0.151105155 0.370133065 0.38282676 77.2855132 0.111962217 0.145323413 2.76E-07 6.559552692 -0.43093077 EEQTDT(ph)SDGESVTHHIR ddPTM_K562_Paclitaxel_30min_R1 1 EEQTDTSDGESVTHHIR 17 0 A2AB27;P36915 A2AB27 GNL1 Guanine nucleotide-binding protein-like 1 1 EEQT(0.002)DT(0.499)S(0.499)DGESVTHHIR 99.238 0.0031342 54256000 2526.5 2785.5 4417.6 3403.8 3150.3 3032.7 2858.7 3620.6 1806.7 3606.7 TRUE FALSE 2561.878795 3089.63031 3302.322244 3185.495503 3579.424195 3570.506764 3401.123402 3313.007431 1980.241608 2871.65256 0.892127004 1.075906728 1.149972768 1.109290012 1.246468408 1.243363077 1.184378448 1.153693687 0.689582589 1 11.48766549 -8.743362639 24.99841238 0.844791319 1.139166049 0.486354468 0.117832496 171.2984374 236891.3822 0.081144245 0.030535096 1.81E-09 8.743362639 0.29437473 EEQTDTS(ph)DGESVTHHIR ddPTM_K562_Paclitaxel_30min_R1 1 EEQTDTSDGESVTHHIR 17 0 A2AB27;P36915 A2AB27 GNL1 Guanine nucleotide-binding protein-like 1 1 EEQT(0.002)DT(0.15)S(0.847)DGES(0.001)VTHHIR 88.133 0.0052879 40056000 2487.1 2335.1 4030.1 2962.2 3275.7 2621.9 2453.4 3338 1666.2 3417.1 TRUE FALSE 2521.927073 2590.054115 3012.651411 2772.21775 3721.905798 3086.857152 2918.919842 3054.416065 1826.245955 2720.693144 0.926942856 0.951983181 1.107310252 1.018938044 1.367999109 1.134584824 1.072858896 1.122660992 0.671242899 1 11.40975853 -8.74132786 24.99668938 0.835621384 1.092117003 0.3537763 0.136295614 227.1619441 282342.5166 0.094656956 0.035678594 1.81E-09 8.74132786 0.256495619 EES(ph)EES(ph)DDDMGFGLFD ddPTM_K562_Paclitaxel_30min_R1 2 EESEESDDDMGFGLFD 16 0 P05387;H0YDD8;P05386-2;P05386 P05387 RPLP2;RPLP1 60S acidic ribosomal protein P2;60S acidic ribosomal protein P1 2 EES(1)EES(1)DDDMGFGLFD;EES(1)EES(1)DDDMGFGLFD 164.7 9.59E-07 10282200 2954.6 2787.3 3376.5 3997.4 3186.2 2613.2 2681 3731.8 2545.31 4313.2 TRUE FALSE 2995.973516 3091.62684 2524.060815 3741.024656 3620.214383 3076.614329 3189.705754 3414.760297 2789.798398 3434.167472 0.872401693 0.900255117 0.734984777 1.08935417 1.054175258 0.895883603 0.928814852 0.994348798 0.812365274 1 11.74574468 -6.257101365 24.99969765 0.966585348 0.842317997 0.340344252 0.084037419 466.9253615 2690850.517 0.02361783 0.039164193 5.53E-07 6.257101365 -0.124267351 EES(ph)EES(ph)DEDMGFGLFD ddPTM_K562_Paclitaxel_30min_R1 3 EESEESDEDMGFGLFD 16 0 F8W1K8;F8VWS0;P05388-2;Q8NHW5;P05388 F8W1K8 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 2 EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD;EES(1)EES(1)DEDMGFGLFD 191.01 9.10E-30 155755000 6313.67 5422.81 8026.75 7431.18 6048.11 5339.09 5627.44 6721.62 4492.84 7872.35 TRUE FALSE 6402.080859 6014.890735 6000.297689 6954.577376 6871.964977 6285.902647 6695.217363 6150.576426 4924.397357 6267.960749 1.021397727 0.959624825 0.957296628 1.109543862 1.096363754 1.002862478 1.068165171 0.981272326 0.785645851 1 12.61378043 -8.534230158 24.67355393 0.889701547 1.029317589 0.392520133 0.06800045 191.2444243 415679.8284 0.045721951 0.017314468 2.92E-09 8.534230158 0.139616042 EES(ph)EES(ph)EAEPVQR ddPTM_K562_Paclitaxel_30min_R1 2 EESEESEAEPVQR 13 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 EES(1)EES(1)EAEPVQR;EES(1)EES(1)EAEPVQR 193.51 0.00026625 61837000 11977 9123.3 13108.5 11680.4 8987.8 8884.2 9171.5 12109.3 8893.9 14145 TRUE FALSE 12144.71495 10119.41275 9799.097051 10931.27142 10212.09052 10459.68813 10911.74425 11080.53938 9748.198834 11262.24124 1.078356847 0.898525661 0.870084102 0.970612438 0.906754731 0.928739485 0.968878576 0.983866279 0.865564734 1 13.45920634 -7.743507519 24.58326453 0.95323293 0.936599853 0.004450617 0.062557548 1271.712838 1743427.207 0.023571968 0.018217689 1.81E-08 7.743507519 -0.016633078 EES(ph)EESEAEPVQR ddPTM_K562_Paclitaxel_30min_R1 2 EESEESEAEPVQR 13 0 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 EES(0.983)EES(0.017)EAEPVQR;EES(1)EESEAEPVQR 173.59 9.64E-05 62238000 1776.09 1735.66 3115.7 2726.3 2113.96 2196.1 1547.29 2090.98 1221.06 2119.1 TRUE FALSE 1800.96074 1925.165228 2329.103001 2551.44732 2401.917142 2585.5475 1840.8802 1913.338198 1338.348269 1687.226257 1.067409147 1.141023749 1.380433117 1.512214091 1.423589238 1.532424884 1.091068962 1.134014001 0.793223946 1 10.72043774 -8.21318966 1.982328854 0.930541752 1.341984134 0.517137412 0.160382444 0.303544062 2.24492612 0.120617201 0.051342208 6.12E-09 8.21318966 0.411442382 EESEES(ph)DEDMGFGLFD ddPTM_K562_Paclitaxel_30min_R1 3 EESEESDEDMGFGLFD 16 0 F8W1K8;F8VWS0;P05388-2;Q8NHW5;P05388 F8W1K8 RPLP0;RPLP0P6 60S acidic ribosomal protein P0;60S acidic ribosomal protein P0-like 1 EES(0.002)EES(0.998)DEDMGFGLFD;EES(0.002)EES(0.998)DEDMGFGLFD;EES(0.002)EES(0.998)DEDMGFGLFD 197.38 6.41E-13 48811000 8206.4 8224.1 11961 8561.8 7883.1 7317 7555.7 9459.8 6193.5 10872.7 TRUE FALSE 8321.314919 9122.03505 8941.297618 8012.684469 8956.911682 8614.567214 8989.354632 8656.130944 6788.413348 8656.837772 0.961241869 1.053737553 1.032859556 0.925590231 1.034663224 0.99511709 1.038410892 0.99991835 0.784167791 1 13.07962441 -8.576182938 21.81863203 0.892066814 1.007327079 0.357851473 0.060634085 27.79157855 11373.96393 0.03773729 0.014263359 2.65E-09 8.576182938 0.115260265 EFAGEDT(ph)SDLFLEER ddPTM_K562_Paclitaxel_30min_R1 1 EFAGEDTSDLFLEER 15 0 O14980 O14980 XPO1 Exportin-1 1 EFAGEDT(0.5)S(0.5)DLFLEER 245.19 2.47E-58 6395200 1561.5 1359.2 1739.2 1395.9 1517.6 1080.2 1497.9 1696.6 923.8 1856.9 TRUE FALSE 1583.365818 1507.602053 1300.11745 1306.373222 1724.322813 1271.758303 1782.118705 1552.46324 1012.535118 1478.462761 1.070954142 1.019709182 0.879371117 0.883602385 1.166294383 0.860189608 1.205386265 1.050052312 0.684856693 1 10.52988219 -8.730725598 24.99390137 0.842427769 1.014041077 0.219691059 0.13146876 258.269906 210172.6673 0.08640407 0.03264982 1.86E-09 8.730725598 0.171613308 EFAGEDTS(ph)DLFLEER ddPTM_K562_Paclitaxel_30min_R1 1 EFAGEDTSDLFLEER 15 0 O14980 O14980 XPO1 Exportin-1 1 EFAGEDT(0.226)S(0.774)DLFLEER 207.08 2.97E-13 7408100 1345.3 1415.8 1624.5 1356.6 1312.4 1073.3 1271 1412.2 877.67 1855 TRUE FALSE 1364.138351 1570.381832 1214.374883 1269.593748 1491.171099 1263.634685 1512.165615 1292.224795 961.974125 1476.949982 0.923618516 1.063259996 0.822218016 0.859605108 1.009628706 0.855570399 1.023843484 0.874927933 0.651324782 1 10.52840525 -8.525539649 24.99904212 0.804817042 0.93508166 0.143951307 0.107893571 134.8984619 1267279.79 0.067610553 0.025886392 2.98E-09 8.525539649 0.130264618 EFDELNPS(ph)AQR ddPTM_K562_Paclitaxel_30min_R1 1 EFDELNPSAQR 11 0 H7C5W9;P16615-5;P16615-2;P16615-3;P16615-4;P16615 H7C5W9 ATP2A2 Sarcoplasmic/endoplasmic reticulum calcium ATPase 2 1 EFDELNPS(1)AQR 151.66 0.00050777 19174000 1741.2 1540.6 1842.2 1535.8 1477.4 1228.1 1545.1 1951.1 1566.8 2099.5 TRUE FALSE 1765.582172 1708.807918 1377.113826 1437.300662 1678.646893 1445.886292 1838.274659 1785.341877 1717.298141 1671.620748 1.056209774 1.022246177 0.823819534 0.859824613 1.004203193 0.864960724 1.099696006 1.06803046 1.027325213 1 10.70703185 -7.769327582 24.99974729 1.054432129 0.93654025 0.341638566 0.074760188 212.282109 672769.422 0.032646581 0.022458861 1.70E-08 7.769327582 -0.117891879 EFGSLPT(ph)TPSEQR ddPTM_K562_Paclitaxel_30min_R1 2 EFGSLPTTPSEQR 13 0 O15400-2;O15400 O15400-2 STX7 Syntaxin-7 1 EFGS(0.001)LPT(0.499)T(0.499)PS(0.001)EQR;EFGS(0.001)LPT(0.852)T(0.131)PS(0.015)EQR 197.38 3.72E-06 40234000 4688.3 4521.9 6474.8 5235.2 4368.5 4524.8 4245.6 5518.4 3766.4 6243.7 TRUE FALSE 4753.950665 5015.616334 4840.156661 4899.437704 4963.563659 5327.209749 5051.180436 5049.577475 4128.179549 4971.230513 0.956292542 1.008928538 0.97363352 0.985558342 0.998457755 1.071607872 1.016082522 1.015760074 0.830414027 1 12.27938729 -8.720890203 24.99999634 0.915206409 1.004441117 0.351985337 0.047785594 133.8910546 82548.69987 0.030982645 0.011710039 1.90E-09 8.720890203 0.089234709 EFGSLPTT(ph)PSEQR ddPTM_K562_Paclitaxel_30min_R1 2 EFGSLPTTPSEQR 13 0 O15400-2;O15400 O15400-2 STX7 Syntaxin-7 1 EFGSLPT(0.115)T(0.885)PS(0.001)EQR;EFGSLPT(0.076)T(0.897)PS(0.027)EQR 171.26 0.00010921 46085700 3904.7 4265.8 5397.3 5008 3856.4 3994 4288.6 4417 3234.9 5200.7 TRUE FALSE 3959.377847 4731.55447 4034.684862 4686.809295 4381.706969 4702.279821 5102.339462 4041.74828 3545.626599 4140.794485 0.956187964 1.14266827 0.974374574 1.13186233 1.058180256 1.135598455 1.232212678 0.976080386 0.856267224 1 12.01569189 -8.508931963 24.69588713 0.924146976 1.090865384 0.399810233 0.083355965 503.6160446 891773.9095 0.047098217 0.021111119 3.10E-09 8.508931963 0.166718407 EFGYDSPHDLDS(ph)D ddPTM_K562_Paclitaxel_30min_R1 1 EFGYDSPHDLDSD 13 0 Q96CW6 Q96CW6 SLC7A6OS Probable RNA polymerase II nuclear localization protein SLC7A6OS 1 EFGYDSPHDLDS(1)D 84.365 0.025207 25557000 3494.2 4011.9 5079.8 4005.1 3750.5 4227.9 3844.6 4714.8 2344.7 5696.5 TRUE FALSE 3543.129581 4449.932809 3797.341664 3748.230812 4261.381596 4977.658702 4574.09278 4314.248311 2569.918911 4535.550173 0.781190692 0.981123048 0.837239479 0.826411498 0.939551198 1.097476274 1.00849789 0.951207273 0.566616797 1 12.14706185 -5.240677591 22.56045831 0.915148555 0.781190193 0.074293348 0.138139097 3726.779517 4049400.617 0.034990982 1.221933478 5.75E-06 5.240677591 -0.133958362 EFITGDVEPTDAES(ph)EWHSENEEEEK ddPTM_K562_Paclitaxel_30min_R1 1 EFITGDVEPTDAESEWHSENEEEEK 25 0 E9PNJ7;C9J6D1;Q99733;Q99733-2;E9PS34;A8MXH2;E9PKT8;C9JZI7 E9PNJ7 NAP1L4 Nucleosome assembly protein 1-like 4 1 EFITGDVEPT(0.003)DAES(0.956)EWHS(0.041)ENEEEEK 101.89 9.62E-06 30635000 640.78 711.19 1525.3 924.99 636.22 666.72 648.01 1013.3 572.42 1438.8 TRUE FALSE 649.752897 788.8401293 1140.21915 865.6652815 722.8839353 784.9534308 770.9665147 927.2138402 627.4034986 1145.57177 0.567186547 0.688599484 0.995327556 0.755662198 0.631024571 0.685206681 0.672997131 0.809389568 0.547677164 1 10.16185213 -11.97856627 3.988423885 1.23438052 0.714629997 0.340673916 0.122202062 0.084893261 0.000456215 0.039439797 0.029410589 1.05E-12 11.97856627 -0.519750523 EFITGDVEPTDAES(ph)EWHSENEEEEKLAGDMK ddPTM_K562_Paclitaxel_30min_R1 1 EFITGDVEPTDAESEWHSENEEEEKLAGDMK 31 1 E9PNJ7;C9J6D1;Q99733;Q99733-2;A8MXH2;E9PKT8;C9JZI7 E9PNJ7 NAP1L4 Nucleosome assembly protein 1-like 4 1 EFITGDVEPT(0.104)DAES(0.486)EWHS(0.41)ENEEEEKLAGDMK 56.156 0.0010521 50642000 1907.4 968.22 3777 1711.1 1269.4 996.27 981.36 1722.6 1490.9 2255.7 TRUE FALSE 1934.109485 1073.933534 2823.449637 1601.357705 1442.313771 1172.944496 1167.567937 1576.254378 1634.107607 1795.987102 1.076906111 0.597962832 1.572087925 0.89163096 0.803075796 0.653091826 0.650098175 0.877653507 0.909866003 1 10.81056127 -6.511942882 24.91049744 0.798041147 1.066879341 0.194849671 0.240368888 812.3709389 1850478.344 0.068953346 0.095506602 3.08E-07 6.511942882 0.268838194 EFITGDVEPTDAESEWHS(ph)ENEEEEK ddPTM_K562_Paclitaxel_30min_R1 1 EFITGDVEPTDAESEWHSENEEEEK 25 0 E9PNJ7;C9J6D1;Q99733;Q99733-2;E9PS34;A8MXH2;E9PKT8;C9JZI7 E9PNJ7 NAP1L4 Nucleosome assembly protein 1-like 4 1 EFITGDVEPTDAES(0.173)EWHS(0.827)ENEEEEK 108.32 1.40E-06 35698000 2135.5 1732.4 2827.3 1865 1261.1 1410.2 1241.5 2454.3 1273.3 2887.9 TRUE FALSE 2165.403589 1921.549291 2113.513147 1745.387247 1432.883171 1660.27917 1477.068144 2245.791896 1395.606154 2299.344395 0.941748262 0.835694424 0.919180768 0.759080393 0.623170315 0.722066331 0.64238665 0.976709666 0.606958295 1 11.16700685 -6.288689004 8.825263904 0.748019789 0.892554542 0.184060539 0.130227265 0.512501924 158.0255602 0.034934768 0.052674469 5.14E-07 6.288689004 0.144534752 EFITGDVEPTDAESEWHS(ph)ENEEEEKLAGDMK ddPTM_K562_Paclitaxel_30min_R1 4 EFITGDVEPTDAESEWHSENEEEEKLAGDMK 31 1 E9PNJ7;C9J6D1;Q99733;Q99733-2;A8MXH2;E9PKT8;C9JZI7 E9PNJ7 NAP1L4 Nucleosome assembly protein 1-like 4 1 EFIT(0.001)GDVEPT(0.019)DAES(0.028)EWHS(0.952)ENEEEEKLAGDMK;EFITGDVEPT(0.032)DAES(0.222)EWHS(0.745)ENEEEEKLAGDMK;EFITGDVEPT(0.002)DAES(0.076)EWHS(0.922)ENEEEEKLAGDMK;EFITGDVEPTDAES(0.045)EWHS(0.954)ENEEEEKLAGDMK 97.771 7.87E-12 399513100 7553.89 5039.47 16546.9 7295.97 5055.2 4610.83 4034.1 7151.15 6854.57 10971.26 TRUE FALSE 7659.667766 5589.696377 12369.43045 6828.03914 5743.803825 5428.495961 4799.549416 6543.615171 7512.982076 8735.31119 0.87686261 0.639896651 1.416026307 0.781659519 0.657538547 0.621442768 0.549442294 0.749099263 0.860070341 1 13.09264338 -6.505446256 24.86346184 0.71236187 0.969661588 0.19272667 0.214549719 1043.570949 1488416.198 0.060808712 0.087960143 3.12E-07 6.505446256 0.257299719 EFNAEVHRK ddPTM_K562_Paclitaxel_30min_R1 1 EFNAEVHRK 9 1 A0A2R8Y6J3;P46777 A0A2R8Y6J3 RPL5 60S ribosomal protein L5 0 80.219 0.015654 8439600 2981.2 2539.3 5147.7 3230.3 2705.5 2528.8 2432 3842.9 2443.5 4773 FALSE TRUE 3022.945998 2816.549361 3848.099469 3023.123016 3074.034904 2977.247174 2893.459304 3516.421658 2678.209093 3800.25998 0.795457683 0.741146494 1.012588478 0.795504263 0.808901212 0.783432499 0.761384568 0.925310815 0.704743651 1 11.8918824 -11.38373896 5.428385841 1.000082158 0.818049333 0.295763461 0.085798776 8.26E-05 9.37E-06 0.080395365 0.01948996 4.13E-12 11.38373896 -0.182032825 EFRPEDQPWLLR ddPTM_K562_Paclitaxel_30min_R1 1 EFRPEDQPWLLR 12 1 M0QXD6;P35269;M0R0Z3;M0R0R9 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 0 122.33 0.015908 8012400 761.05 833.66 753.98 681.88 815.36 824.43 887.87 1029.9 827.44 1389.3 FALSE TRUE 771.707048 924.6818181 563.6284239 638.1472688 926.4258362 970.6310849 1056.338698 942.4035666 906.9193091 1106.159897 0.697645114 0.835938656 0.509536122 0.576903276 0.837515298 0.8774781 0.954960219 0.851959621 0.819880843 1 10.11134423 -6.898061538 5.249779695 0.891188665 0.658558912 0.614158919 0.092192044 0.157253697 6.784059362 0.030651946 0.034969873 1.26E-07 6.898061538 -0.232629753 EFS(ph)SNMYLSRLR ddPTM_K562_Paclitaxel_30min_R1 1 EFSSNMYLSRLR 12 1 Q9BZM3 Q9BZM3 GSX2 GS homeobox 2 1 EFS(0.5)S(0.5)NMYLSRLR 72.089 0.030349 0 1981.1 1925.2 2953.8 2109.5 1872.8 1767.1 1583.1 2062.1 2454.9 2247.6 TRUE FALSE 2008.841512 2135.399847 2208.076658 1974.206112 2127.907067 2080.470374 1883.484961 1886.911734 2690.704114 1789.537886 1.12254763 1.193268867 1.233880922 1.103193247 1.189081876 1.162574087 1.052497952 1.054412845 1.503574825 1 10.80537137 -6.262063199 24.54880017 1.152273807 1.184236102 0.011327183 0.132798045 335.8515928 13216910.06 0.035955602 0.057073944 5.47E-07 6.262063199 0.031962295 EFVSISS(ph)PAHVAT ddPTM_K562_Paclitaxel_30min_R1 1 EFVSISSPAHVAT 13 0 P22681;A0A0U1RR39 P22681 CBL E3 ubiquitin-protein ligase CBL 1 EFVSIS(0.162)S(0.838)PAHVAT 100.09 0.0085167 15777000 1985.7 2051.7 2727.1 2043.6 1638.3 2156.2 1761.4 1770.5 1676.8 2522.4 TRUE FALSE 2013.505926 2275.711544 2038.609877 1912.532643 1861.464197 2538.571795 2095.616455 1620.084974 1837.864132 2008.333495 1.002575484 1.133134288 1.015075375 0.952298335 0.926870065 1.264019049 1.043460391 0.80668125 0.915118996 1 10.97178314 -8.199394582 10.32868597 0.89576913 1.050253416 0.292010841 0.100055882 0.773884881 126.6443405 0.048562153 0.028005289 6.32E-09 8.199394582 0.154484286 EGALSRVSDES(ph)LSK ddPTM_K562_Paclitaxel_30min_R1 1 EGALSRVSDESLSK 14 1 Q08357 Q08357 SLC20A2 Sodium-dependent phosphate transporter 2 1 EGALS(0.007)RVS(0.088)DES(0.453)LS(0.453)K 103.88 0.015116 11967000 919.1 1181.1 2700.3 1784.8 1195.6 1271.3 903.11 1527.5 872.51 1512.3 TRUE FALSE 931.9702357 1310.056492 2018.575868 1670.330916 1358.460962 1496.747205 1074.470408 1397.729341 956.318484 1204.09243 0.774002238 1.088003263 1.676429332 1.387211542 1.128203224 1.243050091 0.892348778 1.160815653 0.794223483 1 10.23373043 -7.750974282 24.61665543 0.97524829 1.235024893 0.220584712 0.232017547 285.3273194 671165.9474 0.094981551 0.072741128 1.77E-08 7.750974282 0.259776602 EGDPVSLSTPLETEFGS(ph)PS(ph)ELSPR ddPTM_K562_Paclitaxel_30min_R1 1 EGDPVSLSTPLETEFGSPSELSPR 24 0 E9PMR3;E9PMG4;Q9BUR4 E9PMR3 WRAP53 Telomerase Cajal body protein 1 2 EGDPVSLS(0.004)T(0.051)PLET(0.008)EFGS(0.96)PS(0.946)ELS(0.031)PR 115.83 1.76E-07 1453900 784.37 882.53 1371.8 834.9 709.08 860.69 760 1031.4 810.61 976.66 TRUE FALSE 795.3536 978.8876099 1025.472124 781.3532509 805.6687008 1013.321287 904.2060325 943.7761322 888.4727124 777.6161559 1.022810025 1.258831369 1.318738192 1.004805835 1.036075054 1.303112441 1.162792241 1.213678658 1.142559482 1 9.602914383 -9.034820852 21.07309816 0.999999996 1.168847655 0.17160959 0.107936571 1131.556887 684804.4616 0.106341781 0.02745733 9.23E-10 9.034820852 0.168847659 EGDPVSLSTPLETEFGS(ph)PSELS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 EGDPVSLSTPLETEFGSPSELSPR 24 0 E9PMR3;E9PMG4;Q9BUR4 E9PMR3 WRAP53 Telomerase Cajal body protein 1 2 EGDPVSLSTPLET(0.001)EFGS(0.989)PS(0.033)ELS(0.977)PR 141.84 5.12E-19 1972500 1562.2 1626.4 1957.2 1806.8 1230.7 1393.5 1464.1 1697.2 1071.1 1866.4 TRUE FALSE 1584.07562 1803.975852 1463.080654 1690.919935 1398.342176 1640.617659 1741.905332 1553.012266 1173.983941 1486.026656 1.065980623 1.213959282 0.984558822 1.137879949 0.940994006 1.104029765 1.172189829 1.045076991 0.790015399 1 10.53724428 -8.602556852 7.10165708 0.897825362 1.087717206 0.419055316 0.089792603 0.206082776 15.21271113 0.059129439 0.021942405 2.50E-09 8.602556852 0.189891843 EGDPVSLSTPLETEFGSPSELS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 EGDPVSLSTPLETEFGSPSELSPR 24 0 E9PMR3;E9PMG4;Q9BUR4 E9PMR3 WRAP53 Telomerase Cajal body protein 1 1 EGDPVSLSTPLETEFGSPS(0.014)ELS(0.986)PR;EGDPVSLSTPLETEFGSPS(0.004)ELS(0.996)PR;EGDPVSLSTPLETEFGSPS(0.003)ELS(0.997)PR;EGDPVSLSTPLET(0.002)EFGS(0.01)PS(0.033)ELS(0.955)PR 201.47 1.96E-35 41904800 6830.3 6118.6 9363.8 7783.3 7090.7 6199.76 6629.7 8496.6 5535.18 9822.3 TRUE FALSE 6925.945273 6786.64944 6999.79288 7284.113975 8056.573387 7299.200387 7887.650966 7774.760796 6066.858771 7820.509868 0.885613009 0.867801403 0.895055821 0.931411647 1.030185183 0.93334073 1.008585258 0.994150116 0.775762562 1 12.93304695 -6.306343581 3.230113375 0.959335453 0.87917822 0.193287943 0.067238364 0.397222585 8.382120681 0.019350633 0.032081695 4.94E-07 6.306343581 -0.080157233 EGDVLTLLESER ddPTM_K562_Paclitaxel_30min_R1 4 EGDVLTLLESER 12 0 P62857 P62857 RPS28 40S ribosomal protein S28 0 ;;; 180.19 0.0011856 52235000 3374.58 3108.4 5355.7 3939.59 3404.02 3313.6 3709.42 3997.05 2406.81 4453.6 FALSE TRUE 3421.834531 3447.785624 4003.587297 3686.92233 3867.705155 3901.220435 4413.263081 3657.475654 2637.994854 3545.953875 0.96499691 0.972315418 1.129057917 1.039754735 1.090737582 1.100189278 1.244591226 1.031450431 0.743945056 1 11.79195805 -8.584769017 8.535323548 0.875010221 1.079699875 0.423420571 0.094482539 0.271042749 33.59138345 0.064643158 0.024255285 2.60E-09 8.584769017 0.204689654 EGDVLTLLESEREAR ddPTM_K562_Paclitaxel_30min_R1 4 EGDVLTLLESEREAR 15 1 P62857 P62857 RPS28 40S ribosomal protein S28 0 ;;; 201.09 9.37E-09 60122000 7365.2 6452.6 9249 7900.4 5764.6 6017.5 5892.4 6687.8 9993.4 7017.7 FALSE TRUE 7468.335524 7157.116689 6913.97556 7393.703705 6549.836115 7084.619135 7010.45214 6119.629646 10953.31072 5587.488888 1.336617517 1.280918286 1.237403008 1.323260565 1.172232509 1.267943306 1.254669545 1.095237909 1.960327965 1 12.44798434 EGEEPTVYS(ph)DEEEPKDESAR ddPTM_K562_Paclitaxel_30min_R1 2 EGEEPTVYSDEEEPKDESAR 20 1 O00264-2;O00264 O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 1 EGEEPTVYS(0.999)DEEEPKDESAR;EGEEPT(0.001)VY(0.001)S(0.998)DEEEPKDESAR 152.51 1.99E-12 247105000 4289.9 3621.9 9100.1 4671.6 3572.1 3167.9 3572.4 5415.4 3189.5 7037.6 TRUE FALSE 4349.971835 4017.35129 6802.667206 4371.984485 4058.680496 3729.682585 4250.244251 4955.327968 3495.865726 5603.333257 0.776318601 0.716957408 1.214039375 0.780247093 0.724333233 0.665618555 0.758520698 0.884353605 0.623890382 1 12.45206958 EGHS(ph)VLESLR ddPTM_K562_Paclitaxel_30min_R1 1 EGHSVLESLR 10 0 O15068-5;O15068-4;O15068-3;O15068-2;O15068-6;O15068-8;O15068-10;O15068-9;O15068 O15068-5 MCF2L Guanine nucleotide exchange factor DBS 1 EGHS(1)VLESLR 82.494 0.023603 13209000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 EGIQWEAKEDNS(ph)EGEEILEEVGGDLEEEDDHHMEFCR ddPTM_K562_Paclitaxel_30min_R1 1 EGIQWEAKEDNSEGEEILEEVGGDLEEEDDHHMEFCR 37 1 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8YDJ9;A0A2R8Y425;A0A2R8Y445;A0A2R8Y8C1;A0A2R8YER1;A0A2R8Y5Z7;A0A2R8Y685;A0A2R8Y8B3 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 EGIQWEAKEDNS(1)EGEEILEEVGGDLEEEDDHHMEFCR 59.431 0.00014618 5659800 655.58 636.54 1322.9 772.15 669.26 541.36 521.55 964.21 744.23 1338.3 TRUE FALSE 664.7601426 706.0395898 988.9175336 722.627755 760.4245427 637.3625949 620.5113898 882.2943421 815.7166168 1065.553725 0.623863562 0.662603464 0.928078529 0.678171112 0.713642611 0.598151534 0.582337028 0.828014882 0.765533072 1 10.05738762 -9.158808459 1.337130426 0.996705081 0.695003511 0.464506017 0.09826173 0.628210149 2.285167179 0.09847439 0.029623999 6.94E-10 9.158808459 -0.30170157 EGLIS(ph)QDGSSLEALLR ddPTM_K562_Paclitaxel_30min_R1 1 EGLISQDGSSLEALLR 16 0 J3KMZ8;Q92785;Q92785-2 J3KMZ8 DPF2 Zinc finger protein ubi-d4 1 EGLIS(1)QDGSSLEALLR 95.662 0.0060999 2380800 364.84 444.83 515.21 621.13 372.83 315.48 294.16 455.92 492.87 746.37 TRUE FALSE 369.9488856 493.3980437 385.1388635 581.2935019 423.6157581 371.4259484 349.9753244 417.1867502 540.2123657 594.2593843 0.622537726 0.830273878 0.648098917 0.978181443 0.71284656 0.625023278 0.588926879 0.702028039 0.909051468 1 9.214948971 -8.887646943 3.732219466 0.995913407 0.716856321 0.444488713 0.1097468 0.204529312 5.051816524 0.108881893 0.02894261 1.30E-09 8.887646943 -0.279057086 EGLSNCNTESPVS(ph)PLESHSK ddPTM_K562_Paclitaxel_30min_R1 1 EGLSNCNTESPVSPLESHSK 20 0 B4DKH3;Q5U623 B4DKH3 ATF7IP2 Activating transcription factor 7-interacting protein 2 1 EGLSNCNTES(0.007)PVS(0.992)PLESHSK 97.124 0.00062457 17071000 909.35 615.49 1381.8 757.32 673.66 428.19 470.32 821.9 638.8 952.36 TRUE FALSE 922.0837056 682.6912797 1032.9475 708.7488848 765.4238972 504.1234844 559.5607648 752.0744649 700.1595942 758.2685092 1.216038507 0.900329199 1.362245019 0.934693814 1.009436483 0.664835053 0.737945408 0.991831331 0.923366309 1 9.566564999 -6.642775014 2.399188755 0.861998399 1.132084134 0.366204899 0.153632664 0.313706771 3.673565143 0.049173517 0.067672088 2.28E-07 6.642775014 0.270085734 EGMNPSYDEYADS(ph)DEDQHDAYLER ddPTM_K562_Paclitaxel_30min_R1 10 EGMNPSYDEYADSDEDQHDAYLER 24 0 Q08945;A0A0U1RRK2 Q08945 SSRP1 FACT complex subunit SSRP1 1 EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEY(0.002)ADS(0.998)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSYDEYADS(1)DEDQHDAYLER;EGMNPSY(0.001)DEY(0.003)ADS(0.996)DEDQHDAYLER;EGMNPS(0.018)Y(0.013)DEY(0.185)ADS(0.763)DEDQHDAY(0.021)LER 162.32 1.03E-25 6577603000 25680.29 23673.75 33950.1 27943.9 25266.05 24276.32 23376.1 27340.1 23055.99 28828.6 TRUE FALSE 26039.89329 26258.53008 25378.97737 26151.70333 28707.71377 28581.3845 27811.59294 25017.38785 25270.62086 22953.3155 1.134471981 1.143997262 1.105678061 1.139343174 1.250700091 1.245196342 1.211659072 1.089924802 1.100957326 1 14.48641494 -8.862722105 1.53946339 1.007442582 1.174101281 0.53807306 0.049602747 0.320247475 1.632102455 0.053494029 0.015996414 1.37E-09 8.862722105 0.166658699 EGNTTEDDFPS(ph)SPGNGNK ddPTM_K562_Paclitaxel_30min_R1 1 EGNTTEDDFPSSPGNGNK 18 0 Q15007 Q15007 WTAP Pre-mRNA-splicing regulator WTAP 1 EGNTTEDDFPS(0.884)S(0.116)PGNGNK 183.71 2.80E-12 74565000 3362 2570.6 6134 3698.5 2608.4 2084.6 2108.7 3385.1 2820.4 4345 TRUE FALSE 3409.078373 2851.266801 4585.395836 3461.294764 2963.708241 2454.274541 2508.814817 3097.514626 3091.312022 3459.486615 0.985428982 0.82418784 1.325455579 1.000522664 0.856690189 0.709433166 0.72519859 0.895368293 0.893575367 1 11.75634224 -6.748166842 4.425124674 0.826738374 1.043134863 0.299170934 0.139660242 0.24052322 11.1968358 0.044264622 0.054864921 1.79E-07 6.748166842 0.216396489 EGNTTEDDFPSS(ph)PGNGNK ddPTM_K562_Paclitaxel_30min_R1 1 EGNTTEDDFPSSPGNGNK 18 0 Q15007 Q15007 WTAP Pre-mRNA-splicing regulator WTAP 1 EGNTTEDDFPS(0.064)S(0.936)PGNGNK 231.44 9.63E-42 88367000 2138.1 1681.6 3896.2 2528.9 1594.7 1608.4 1631.1 2592.8 1971.9 2591.1 TRUE FALSE 2168.039997 1865.202775 2912.556122 2366.707673 1811.925138 1893.627157 1940.59271 2372.525456 2161.309806 2063.032398 1.050899636 0.90410736 1.411783996 1.1471985 0.878282445 0.917885322 0.940650623 1.150018516 1.047637356 1 11.01055076 EGPGALGGEPSPPTHS(ph)PSR ddPTM_K562_Paclitaxel_30min_R1 1 EGPGALGGEPSPPTHSPSR 19 0 A0A087WVC5;A0A0C4DH65;A5PL33-3;A5PL33-2;A5PL33 A0A087WVC5 KRBA1 Protein KRBA1 1 EGPGALGGEPSPPT(0.048)HS(0.476)PS(0.476)R 93.407 0.00099772 27979000 762.36 822.54 1105.2 837.12 661.13 878.94 780.81 805.6 950.43 1076.1 TRUE FALSE 773.0353921 912.3476989 826.1785911 783.43087 751.187099 1034.807668 928.9646214 737.1592516 1041.723048 856.7902293 0.902245807 1.064843724 0.964271723 0.914378856 0.876745641 1.207772489 1.084238113 0.860373084 1.215843753 1 9.742798218 -7.23766217 24.99711199 1.06558088 0.950608427 0.26903929 0.105782898 1251.643208 1315860.677 0.034875763 0.03485922 5.79E-08 7.23766217 -0.114972453 EGPMHQWVS(ph)YQGRVPY(ph)PRPGMCPSK ddPTM_K562_Paclitaxel_30min_R1 1 EGPMHQWVSYQGRVPYPRPGMCPSK 25 2 B4DEK9;A0A0C4DGV8;Q13214-2;Q13214 B4DEK9 SEMA3B Semaphorin-3B 2 EGPMHQWVS(0.917)Y(0.083)QGRVPY(0.964)PRPGMCPS(0.036)K 60.382 0.0036304 25025000 927.33 797.01 697.68 754.42 821.27 688.59 670.9 839.72 568.99 938.14 TRUE FALSE 940.3154811 884.0302471 521.5420552 706.0348779 933.1408782 810.7017682 798.1997727 768.3805446 623.6440318 746.946553 1.258879203 1.183525439 0.698232093 0.945228109 1.24927396 1.085354454 1.068616984 1.028695482 0.834924573 1 9.544861206 -5.543375213 24.99508141 0.999663425 1.240041119 0.309154848 0.140201196 257.6753926 314229.8985 0.037974196 0.10049346 2.86E-06 5.543375213 0.240377694 EGPTDHLESACPLNLPLQNNHTAADMY(ph)LSPVRS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 EGPTDHLESACPLNLPLQNNHTAADMYLSPVRSPK 35 1 P06400;A0A3B3IS71 P06400 RB1 Retinoblastoma-associated protein 2 EGPTDHLESACPLNLPLQNNHT(0.026)AADMY(0.753)LS(0.416)PVRS(0.805)PK 94.929 7.34E-12 32768000 785.07 660.14 2025.7 912.05 585.74 725 707.43 1084.8 847.89 1145.6 TRUE FALSE 796.0634021 732.2163177 1514.286981 853.5551952 665.5277047 853.5685705 841.6611495 992.6394689 929.333623 912.1260912 0.872755872 0.802757782 1.66017286 0.935786404 0.729644411 0.935801068 0.92274649 1.088270008 1.018865299 1 9.833089464 EGPTDHLESACPLNLPLQNNHTAADMYLS(ph)PVRS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 EGPTDHLESACPLNLPLQNNHTAADMYLSPVRSPK 35 1 P06400;A0A3B3IS71 P06400 RB1 Retinoblastoma-associated protein 2 EGPTDHLESACPLNLPLQNNHT(0.062)AADMY(0.379)LS(0.779)PVRS(0.779)PK 75.416 2.63E-06 35360000 852.63 699.15 1619.5 890.11 831.47 692.5 652.07 819.98 816.83 1409.7 TRUE FALSE 864.5694506 775.4855614 1210.637195 833.0223286 944.7302909 815.3051518 775.7968785 750.3175808 895.2901712 1122.402366 0.770284772 0.690915829 1.078612476 0.742177987 0.841703759 0.726392937 0.691193196 0.668492515 0.797655278 1 10.13237424 -7.25704128 24.5200553 0.750680467 0.826821711 0.013756491 0.129499731 852.9138874 4755128.027 0.04258141 0.041164747 5.53E-08 7.25704128 0.076141244 EGQEDQGLTKDYGNSPLHR ddPTM_K562_Paclitaxel_30min_R1 2 EGQEDQGLTKDYGNSPLHR 19 1 A0A0U1RRM4;A0A087WUW5;A0A0D9SF20;A6NLN1;P26599;P26599-2;P26599-3 A0A0U1RRM4;A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 0 ; 94.845 0.0012939 22256900 6539.4 5249.7 10668 7212.9 5119.9 4902.6 4096.3 6781.7 9433.3 7557.5 FALSE TRUE 6630.971776 5822.879999 7974.73146 6750.296878 5817.317061 5772.007274 4873.551541 6205.552255 10339.41061 6017.277352 1.101988722 0.96769347 1.325305615 1.121819136 0.966768976 0.959239027 0.80992636 1.031289052 1.718287194 1 12.55489514 -8.630518041 23.68659658 1.364440187 1.033367166 0.285113243 0.204930053 7.680235988 1667.755024 0.134824724 0.050958825 2.34E-09 8.630518041 -0.33107302 EGQSSRGS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 EGQSSRGSR 9 1 Q15735-3;Q15735 Q15735-3 INPP5J "Phosphatidylinositol 4,5-bisphosphate 5-phosphatase A" 1 EGQS(0.002)S(0.009)RGS(0.989)R 75.043 0.014039 6474900 0 55.944 149.63 121.36 0 115.8 0 0 0 157.42 TRUE FALSE 0 62.05215511 111.8540559 113.5765128 0 136.3355041 0 0 0 125.3377176 0 0.495079664 0.892421356 0.906163882 0 1.087745227 0 0 0 1 6.969676817 -7.811159727 24.9999897 0.16666649 0.565363864 0.097913516 0.437948223 208.1797563 104673.24 0.177908909 0.119946367 1.54E-08 7.811159727 0.398697374 EGRGES(ph)ENAGTNQETR ddPTM_K562_Paclitaxel_30min_R1 1 EGRGESENAGTNQETR 16 1 Q08170 Q08170 SRSF4 Serine/arginine-rich splicing factor 4 1 EGRGES(0.65)ENAGT(0.35)NQETR 106.44 0.0043114 1804100 601.82 460.06 836.73 668.48 592.53 362.37 563.11 919.22 445.65 721.21 TRUE FALSE 610.2473368 510.2909066 625.487163 625.6066848 673.2426176 426.6312316 669.9571829 841.1265234 488.4566737 574.2270061 1.062728381 0.888657101 1.089268105 1.089476249 1.172432871 0.742966156 1.16671138 1.464797919 0.850633405 1 9.165477372 EGRGLDLSSGLVVT(ph)S(ph)LCKS(ph)S(ph)S(ph)LPASQNNLRH ddPTM_K562_Paclitaxel_30min_R1 1 EGRGLDLSSGLVVTSLCKSSSLPASQNNLRH 31 3 H3BU49;Q9Y2Y0-2;Q9Y2Y0 H3BU49 ARL2BP ADP-ribosylation factor-like protein 2-binding protein 5 EGRGLDLS(0.043)S(0.043)GLVVT(0.963)S(0.963)LCKS(0.957)S(0.957)S(0.921)LPAS(0.152)QNNLRH 40.094 0.021407 20098000 0 158.87 60.976 0 150.38 74.451 0 55.399 71.794 0 TRUE FALSE 0 176.2159639 45.58185466 0 170.864302 87.65383951 0 50.69250916 78.69013448 0 0 EGS(ph)PIPHDPEFGSK ddPTM_K562_Paclitaxel_30min_R1 1 EGSPIPHDPEFGSK 14 0 P85037-2;P85037 P85037-2 FOXK1 Forkhead box protein K1 1 EGS(1)PIPHDPEFGSK 79.326 0.024078 17859000 3965 2812.3 7720.9 3931.6 3023.1 2749.3 2811.6 3747.2 2831.9 5145.6 TRUE FALSE 4020.522233 3119.356425 5771.663304 3679.444773 3434.897402 3236.849753 3345.086422 3428.851971 3103.916648 4096.923896 0.981351457 0.761389888 1.408779721 0.898099371 0.838408887 0.790068314 0.816487323 0.836933284 0.757621261 1 12.00032538 -6.50918382 24.89583922 0.831752439 1.043569339 0.258884466 0.158971489 819.9623089 1490600.578 0.044895332 0.063495059 3.10E-07 6.50918382 0.2118169 EGS(ph)PRDNPTAQQIMQLLR ddPTM_K562_Paclitaxel_30min_R1 4 EGSPRDNPTAQQIMQLLR 18 1 A0A087WYC0;Q08379-2;Q08379 A0A087WYC0 GOLGA2 Golgin subfamily A member 2 1 EGS(0.985)PRDNPT(0.015)AQQIMQLLR;EGS(0.885)PRDNPT(0.115)AQQIMQLLR;EGS(1)PRDNPTAQQIMQLLR;EGS(0.996)PRDNPT(0.004)AQQIMQLLR 80.411 0.0068349 34929000 3423.71 3191.33 4630.83 3440.95 3269 3090.26 2826.78 4175.29 3866.77 4332.51 TRUE FALSE 3471.652503 3539.770202 3461.719693 3220.262868 3714.293145 3638.274222 3363.146748 3820.573053 4238.190536 3449.542084 1.006409668 1.026156549 1.00353021 0.933533434 1.076749625 1.054712229 0.974954549 1.107559485 1.228624099 1 11.75218915 -8.372319223 5.59340109 1.13035522 1.012668738 0.339028505 0.063763063 0.230018544 9.850900001 0.034703839 0.016190257 4.24E-09 8.372319223 -0.117686483 EGSEFSFS(ph)DGEVAEK ddPTM_K562_Paclitaxel_30min_R1 1 EGSEFSFSDGEVAEK 15 0 Q9BVS4-2;Q9BVS4 Q9BVS4-2 RIOK2 Serine/threonine-protein kinase RIO2 1 EGS(0.008)EFS(0.008)FS(0.984)DGEVAEK 100.68 0.0049885 15148000 821.07 411.01 1106.2 808.69 644.58 598.35 588.94 877.35 438.75 891.3 TRUE FALSE 832.5675132 455.8854617 826.9261287 756.824243 732.3827088 704.4589712 700.6882905 802.8136413 480.8938979 709.6525708 1.173204393 0.642406553 1.165254891 1.066471502 1.032029952 0.99268149 0.987368072 1.131277014 0.677646947 1 9.470969078 -10.71641532 4.932420704 0.999999998 0.98889741 0.000260093 0.176116596 41351769.63 89842825.13 1.069842113 0.039887474 1.92E-11 10.71641532 -0.011102588 EGSQGELT(ph)PANSQSR ddPTM_K562_Paclitaxel_30min_R1 2 EGSQGELTPANSQSR 15 0 J3QQX0;C9JFE4;A0A096LP07;A0A096LPJ3;A8K070;Q13098-5;Q13098;Q13098-7 J3QQX0 GPS1 COP9 signalosome complex subunit 1 1 EGSQGELT(1)PANSQSR;EGSQGELT(1)PANSQSR 169.58 2.53E-05 38667000 4073.2 2771.5 4755.5 4065.3 3237.5 3182.1 3046.3 3847.1 2294.9 4340.8 TRUE FALSE 4130.237367 3074.101743 3554.91521 3804.569854 3678.502311 3746.400756 3624.319522 3520.264842 2515.335399 3456.142577 1.195042529 0.889460337 1.028578865 1.100813919 1.064337547 1.083983277 1.048660303 1.018553131 0.727786931 1 11.75494702 -8.598006992 8.746337593 0.864709814 1.052412881 0.400250401 0.093822922 0.275652413 28.9091751 0.059934209 0.022489085 2.52E-09 8.598006992 0.187703067 EGSRTDDEVVQREEEAIQLDGLNASQIR ddPTM_K562_Paclitaxel_30min_R1 2 EGSRTDDEVVQREEEAIQLDGLNASQIR 28 2 P14625;Q96GW1;A0A1W2PRR1 P14625 HSP90B1 Endoplasmin 0 ; 89.979 1.68E-06 23422000 1285.65 1180.56 1361.1 1152.61 1300.1 1157.88 1129.32 1487.83 1482.96 1376.32 FALSE TRUE 1303.653067 1309.457533 1017.473471 1078.686753 1477.195631 1363.213761 1343.602575 1361.429555 1625.404934 1095.825229 1.189654183 1.194951074 0.928499769 0.984360211 1.348021192 1.244006549 1.226110277 1.242378364 1.483270226 1 10.09780201 -6.762755959 24.99933944 1.267192753 1.072560465 0.301494995 0.135896667 42.97904788 816097.415 0.041347573 0.04950986 1.73E-07 6.762755959 -0.194632289 EGSTQQLQTTS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 EGSTQQLQTTSPK 13 0 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6;Q5T8P6-5;Q5T8P6-4 A0A087X0H9 RBM26 RNA-binding protein 26 1 EGSTQQLQT(0.002)T(0.101)S(0.897)PK;EGSTQQLQTT(0.381)S(0.619)PK 127.71 0.00070116 24051600 7920.9 6490.8 14915.6 8797.4 7314.8 6418.3 5874.1 8281.6 7583.1 11621 TRUE FALSE 8031.817038 7199.487494 11149.97231 8233.17414 8311.199601 7556.495388 6988.67981 7578.026388 8311.490637 9252.633821 0.868057376 0.778101418 1.205059286 0.889819515 0.898252299 0.816685879 0.755317885 0.819012892 0.898283753 1 13.17564838 -6.886660446 2.748913267 0.841791329 0.944385648 0.07735623 0.118802392 0.592289836 9.063036697 0.040436487 0.047133262 1.30E-07 6.886660446 0.102594319 EGT(ph)NVPLVAAGPCDDEGIVT(ph)S(ph)TGAK ddPTM_K562_Paclitaxel_30min_R1 1 EGTNVPLVAAGPCDDEGIVTSTGAK 25 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 3 EGT(1)NVPLVAAGPCDDEGIVT(0.692)S(0.692)T(0.616)GAK 43.349 0.028944 0 251.48 359.46 301.48 227.65 214.61 229.59 122.79 336.5 578.14 231.14 TRUE FALSE 255.0014959 398.7070584 225.3676453 213.0495479 243.8435154 270.3045629 146.0887615 307.9122246 633.6729302 184.0335411 1.385625111 2.16649126 1.224600929 1.157666948 1.324994965 1.468778796 0.793815957 1.673131011 3.443246956 1 7.523824919 -8.536460402 24.9708221 2.33381231 1.370549974 0.219674731 0.636758737 295.3007068 542919.3275 0.400566204 0.151564444 2.91E-09 8.536460402 -0.963262336 EGTGQQERES(ph)PRPLQLPGAEGPAIS(ph)DGEEGGGEPGAGGGAAGAAGAGR ddPTM_K562_Paclitaxel_30min_R1 1 EGTGQQERESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGR 48 2 Q6PKG0;A0A0B4J210 Q6PKG0 LARP1 La-related protein 1 2 EGT(0.246)GQQERES(0.806)PRPLQLPGAEGPAIS(0.947)DGEEGGGEPGAGGGAAGAAGAGR 42.039 0.0008482 50956000 313.54 241.04 505.75 483.98 373.56 307.28 435.98 308.87 140.04 348.29 TRUE FALSE 317.9305274 267.3575623 378.0671575 452.939689 424.4451964 361.7717936 518.704929 282.6295656 153.4914677 277.3083068 1.146487572 0.964116674 1.363345952 1.633343387 1.53058955 1.304583327 1.870499066 1.019188963 0.55350476 1 8.115347023 -8.514491769 23.70232001 0.779950214 1.397305874 0.501417686 0.256398702 170.597873 482139.4764 0.166007467 0.069420341 3.06E-09 8.514491769 0.617355659 EHAPLAS(ph)PVENKEVYQCR ddPTM_K562_Paclitaxel_30min_R1 1 EHAPLASPVENKEVYQCR 18 1 Q9ULJ3 Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 EHAPLAS(1)PVENKEVYQCR 98.804 0.00077879 23403000 1392.9 1286.5 2851 2060.7 1557.6 1314 1162.5 2159.4 1553.5 2007.4 TRUE FALSE 1412.404897 1426.964421 2131.229789 1928.535925 1769.77149 1547.019451 1383.078306 1975.945491 1702.720616 1598.290778 0.883697082 0.892806516 1.333443087 1.206623946 1.107290059 0.967921152 0.865348362 1.236286612 1.065338448 1 10.64231419 -5.581974234 24.99873719 1.098549555 0.885967268 0.294725139 0.129680246 84.62341024 35797.0234 0.035212379 0.093163219 2.62E-06 5.581974234 -0.212582287 EHASIDAQSGAGVPNPSTS(ph)ASPK ddPTM_K562_Paclitaxel_30min_R1 1 EHASIDAQSGAGVPNPSTSASPK 23 0 Q8IXJ6-5;Q8IXJ6-2;Q8IXJ6-3;Q8IXJ6 Q8IXJ6-5 SIRT2 NAD-dependent protein deacetylase sirtuin-2 1 EHASIDAQSGAGVPNPS(0.022)T(0.039)S(0.625)AS(0.314)PK 160.16 1.35E-18 16301000 1544 1250.4 2582.9 2029.4 1579.2 1364.3 1053.5 1810.7 1230.4 2320.2 TRUE FALSE 1565.620764 1386.922901 1930.81495 1899.243367 1794.313776 1606.239449 1253.396125 1656.869733 1348.585418 1847.341966 0.847499159 0.750766737 1.045185453 1.028095178 0.971294871 0.869486797 0.678486251 0.896893896 0.730013956 1 10.85123524 -7.52223235 24.99616238 0.81150352 0.92966767 0.14688642 0.114314892 42.64744531 1649329.648 0.044302488 0.034733359 3.00E-08 7.52223235 0.11816415 EHASIDAQSGAGVPNPSTSAS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 EHASIDAQSGAGVPNPSTSASPK 23 0 Q8IXJ6-5;Q8IXJ6-2;Q8IXJ6-3;Q8IXJ6 Q8IXJ6-5 SIRT2 NAD-dependent protein deacetylase sirtuin-2 1 EHASIDAQSGAGVPNPS(0.002)T(0.019)S(0.167)AS(0.812)PK 172.67 1.44E-20 14426000 2140.6 1978.3 4086.5 2426.1 1610 1505.9 1497.3 1982.8 1622.8 3156.3 TRUE FALSE 2170.575004 2194.297484 3054.812534 2270.500805 1829.309258 1772.950221 1781.404859 1814.348764 1778.677191 2513.044327 0.863723326 0.873163064 1.215582431 0.903486174 0.727925583 0.705498985 0.708863285 0.721972447 0.707777882 1 11.2952204 -6.639043709 4.525198047 0.743200476 0.985263606 0.396118496 0.123247398 0.196212715 6.857382972 0.036625137 0.04773753 2.30E-07 6.639043709 0.24206313 EHISAENMSLETLRNS(ph)SPEDLFDEI ddPTM_K562_Paclitaxel_30min_R1 2 EHISAENMSLETLRNSSPEDLFDEI 25 1 Q13426;Q13426-2 Q13426 XRCC4 DNA repair protein XRCC4 1 EHISAENMS(0.001)LET(0.067)LRNS(0.466)S(0.466)PEDLFDEI;EHISAENMSLET(0.091)LRNS(0.454)S(0.454)PEDLFDEI 80.994 0.00012819 15775100 1811.41 1679.34 2116.09 1763.46 1422.43 1400.47 1477 1728.92 1555.03 2040.67 TRUE FALSE 1836.775329 1862.69602 1581.856908 1650.359569 1616.189048 1648.823691 1757.25304 1582.037454 1704.39758 1624.780334 1.130476096 1.146429447 0.973582013 1.015743196 0.99471234 1.014797912 1.081532687 0.973693133 1.049001852 1 10.66602897 -5.752200151 24.99998919 1.013916737 1.138452841 0.721362735 0.031211491 95.56791872 258587.1051 0.007747957 0.019899605 1.77E-06 5.752200151 0.124536103 EHIYDLR ddPTM_K562_Paclitaxel_30min_R1 2 EHIYDLR 7 0 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 0 ; 129.68 0.00047757 10855100 7998.9 8404.8 12243.3 10142 8200.6 7816.3 8346.1 9894.8 8701.6 10629.7 FALSE TRUE 8110.909279 9322.464487 9152.327492 9491.537514 9317.660557 9202.411059 9929.728905 9054.174979 9537.42756 8463.361305 0.95835555 1.101508508 1.08140574 1.121485562 1.100940893 1.087323432 1.173260664 1.069808396 1.126907763 1 13.04701504 -5.261231178 23.8939958 1.100692115 0.958355487 0.482386704 0.04246168 7.024489937 805085.581 0.009657352 0.054358715 5.48E-06 5.261231178 -0.142336628 EHNSMWASLSS(ph)PDAEAVEPDFSSIER ddPTM_K562_Paclitaxel_30min_R1 2 EHNSMWASLSSPDAEAVEPDFSSIER 26 0 Q27J81;Q27J81-2;A0A0A0MQU1 Q27J81 INF2 Inverted formin-2 1 EHNSMWAS(0.001)LS(0.123)S(0.876)PDAEAVEPDFSSIER;EHNSMWASLS(0.081)S(0.919)PDAEAVEPDFSSIER 132.02 2.31E-14 69521000 2055.76 2030.89 2212.65 2126.47 1833.61 1649.89 1625.94 2162.92 1884.98 2217.59 TRUE FALSE 2084.546983 2252.629438 1654.039142 1990.087732 2083.378725 1942.474826 1934.453627 1979.166445 2066.040751 1765.643941 1.180615714 1.275811836 0.93679088 1.127117244 1.179954054 1.100150931 1.095608 1.120931803 1.170134422 1 10.78597872 -12.35281679 2.238616521 0.202754903 1.129344395 0.187833487 0.082127715 4479790.769 910048.1088 18938664.06 0.021031328 4.44E-13 12.35281679 0.926589492 EHS(ph)PYGPSPLGWPSSETR ddPTM_K562_Paclitaxel_30min_R1 1 EHSPYGPSPLGWPSSETR 18 0 G3V599;Q96PC5-6;Q96PC5-11;Q96PC5-13;Q96PC5-10;Q96PC5-9;Q96PC5-14;Q96PC5-7;Q96PC5-12;Q96PC5 G3V599 MIA2 Melanoma inhibitory activity protein 2 1 EHS(0.775)PY(0.224)GPS(0.001)PLGWPSSETR 69.289 0.019284 7426000 548.88 558.34 931.33 533.82 593.3 440.11 616.34 624.81 394.63 866.96 TRUE FALSE 556.5660134 619.3014494 696.204223 499.5831745 674.1175047 518.157329 733.2872975 571.7284906 432.5359748 690.2730761 0.806298308 0.897183261 1.008592464 0.723747154 0.976595391 0.750655569 1.062314789 0.828264219 0.626615741 1 9.431023403 -8.516790567 24.98994899 0.784685253 0.890125489 0.049006737 0.132935116 643.9041945 2643073.57 0.078084993 0.03165548 3.04E-09 8.516790567 0.105440236 EHSLQVS(ph)PSLEK ddPTM_K562_Paclitaxel_30min_R1 2 EHSLQVSPSLEK 12 0 O95235-2;O95235 O95235-2 KIF20A Kinesin-like protein KIF20A 1 EHSLQVS(0.992)PS(0.008)LEK;EHSLQVS(0.999)PS(0.001)LEK 95.067 0.0097381 34721000 7112.4 6296.5 11927 8117.8 6023.1 5265.2 5602.3 8703.3 7488 10619.9 TRUE FALSE 7211.995544 6983.973163 8915.881339 7597.160642 6843.548192 6198.909293 6665.307179 7963.900341 8207.255857 8455.558551 0.852929526 0.825962368 1.054440258 0.898481229 0.809354953 0.733116477 0.788275208 0.941853846 0.970634383 1 13.04568434 -8.458467108 5.466583569 0.977216945 0.854297232 0.323098422 0.080308906 0.293694516 17.338516 0.052776264 0.02391775 3.48E-09 8.458467108 -0.122919713 EHSPYGPS(ph)PLGWPSSETR ddPTM_K562_Paclitaxel_30min_R1 1 EHSPYGPSPLGWPSSETR 18 0 G3V599;Q96PC5-6;Q96PC5-11;Q96PC5-13;Q96PC5-10;Q96PC5-9;Q96PC5-14;Q96PC5-7;Q96PC5-12;Q96PC5 G3V599 MIA2 Melanoma inhibitory activity protein 2 1 EHSPYGPS(1)PLGWPSSETR 122.3 5.66E-06 10991000 1257.1 1194.9 1422.1 1222.5 1050.2 936.98 986.23 1213.6 1172.8 1382.9 TRUE FALSE 1274.703278 1325.363223 1063.073267 1144.094322 1193.25502 1103.140247 1173.361994 1110.497105 1285.45268 1101.064221 1.157701117 1.203711099 0.96549615 1.039080464 1.083728812 1.001885472 1.065661722 1.008567061 1.167463855 1 10.1046829 -5.747034876 24.99928818 1.042663359 1.180706181 0.512723422 0.054279016 179.013362 310675.9478 0.013119369 0.034366088 1.79E-06 5.747034876 0.138042821 EHVIEALR ddPTM_K562_Paclitaxel_30min_R1 1 EHVIEALR 8 0 F8W7C6;A0A087WV22;X1WI28;P27635;H7C123;H7C2C5 F8W7C6 RPL10 60S ribosomal protein L10 0 132.76 0.00028057 13761000 5202.5 5155.1 6434.2 5457.6 5178.4 4806.7 5274.9 6099.8 4404.1 6911.6 FALSE TRUE 5275.351051 5717.951251 4809.806633 5107.573963 5883.785751 5659.100756 6275.784738 5581.583916 4827.133483 5503.012126 0.958629734 1.03905845 0.874031625 0.928141506 1.069193674 1.028364217 1.140427205 1.014277961 0.877180237 1 12.42600579 -6.753303407 24.99738759 1.028569965 0.950905281 0.186570498 0.072360301 310.7591084 954788.0169 0.022526687 0.028560691 1.76E-07 6.753303407 -0.077664684 EHVIEALRR ddPTM_K562_Paclitaxel_30min_R1 1 EHVIEALRR 9 1 F8W7C6;A0A087WV22;X1WI28;P27635;H7C123;H7C2C5 F8W7C6 RPL10 60S ribosomal protein L10 0 152.06 0.00019819 16634000 1973.5 2090.7 2248.3 1945.4 1594.3 1725 2459 3193.9 1993.3 3344.4 FALSE TRUE 2001.135089 2318.969696 1680.688858 1820.630751 1811.470652 2030.90453 2925.582413 2922.558259 2184.765371 2662.809444 0.75151269 0.870873318 0.631171285 0.683725512 0.680285499 0.762692402 1.098682604 1.097546903 0.820473795 1 11.37873347 -7.68388146 6.269918915 1.011531955 0.724959598 0.67557518 0.093162429 0.123963133 7.845993639 0.037054677 0.028386612 2.07E-08 7.68388146 -0.286572356 EHYPVSSPS(ph)SPSPPAQPGGVSR ddPTM_K562_Paclitaxel_30min_R1 1 EHYPVSSPSSPSPPAQPGGVSR 22 0 O75179-4;O75179-6;O75179-2;O75179;H0YM23;O75179-7 O75179-4 ANKRD17 Ankyrin repeat domain-containing protein 17 1 EHYPVS(0.001)S(0.005)PS(0.497)S(0.497)PS(0.001)PPAQPGGVSR 312.02 1.69E-245 30965000 3924.1 3869.6 5500.6 4454.5 4465.6 4766.3 3392.1 4601.1 3733.5 4212.2 TRUE FALSE 3979.049507 4292.096014 4111.905499 4168.808308 5073.890323 5611.536383 4035.733267 4210.207836 4092.119357 3353.751328 1.186447389 1.279789583 1.226061535 1.243028448 1.512899982 1.673211826 1.203348988 1.255372693 1.22016183 1 11.71156001 -9.069417559 1.249292512 1.004582932 1.338681958 0.323863955 0.144857867 0.716232625 2.46100569 0.152297391 0.046992268 8.52E-10 9.069417559 0.334099026 EHYPVSSPSS(ph)PS(ph)PPAQPGGVSR ddPTM_K562_Paclitaxel_30min_R1 1 EHYPVSSPSSPSPPAQPGGVSR 22 0 O75179-4;O75179-6;O75179-2;O75179;H0YM23;O75179-7 O75179-4 ANKRD17 Ankyrin repeat domain-containing protein 17 2 EHYPVS(0.026)S(0.088)PS(0.56)S(0.717)PS(0.609)PPAQPGGVSR 67.368 0.018576 72874000 949.84 864.67 1002.3 1061.2 1030.2 980.88 832.39 909.57 799.4 1165.3 TRUE FALSE 963.1406905 959.0775947 749.2569687 993.1393818 1170.530681 1154.825296 990.3316571 832.2963511 876.1859418 927.8112204 1.038078296 1.033699069 0.807553253 1.070411049 1.261604361 1.24467701 1.067384868 0.897053552 0.944357993 1 9.857687483 -8.229567363 11.2164532 0.940546074 1.076500422 0.191553726 0.119895088 1.746870688 612.7225025 0.065089804 0.037334321 5.89E-09 8.229567363 0.135954348 EHYPVSSPSS(ph)PSPPAQPGGVSR ddPTM_K562_Paclitaxel_30min_R1 2 EHYPVSSPSSPSPPAQPGGVSR 22 0 O75179-4;O75179-6;O75179-2;O75179;H0YM23;O75179-7 O75179-4 ANKRD17 Ankyrin repeat domain-containing protein 17 1 EHYPVSS(0.001)PS(0.314)S(0.647)PS(0.038)PPAQPGGVSR;EHYPVSSPS(0.075)S(0.903)PS(0.022)PPAQPGGVSR 109.18 5.27E-05 161477000 1668.27 1525.74 2764 2163.78 1650.22 1673.98 1437.39 1793.68 1739.78 2087.37 TRUE FALSE 1691.630927 1692.325453 2066.194015 2025.004836 1875.007902 1970.836849 1710.127249 1641.295688 1906.893643 1661.962848 1.017851229 1.018269124 1.243225152 1.218441698 1.128188819 1.18584892 1.028980432 0.987564608 1.14737441 1 10.69867242 -7.775067218 24.85523971 1.039943548 1.138345438 0.247578085 0.08044421 341.2405541 622368.2663 0.035938412 0.024382594 1.68E-08 7.775067218 0.09840189 EIAQDFKTDLR ddPTM_K562_Paclitaxel_30min_R1 1 EIAQDFKTDLR 11 1 K7EMV3;A0A590UJJ6;B4DEB1;K7EK07;K7ES00;Q71DI3;Q16695;P84243;P68431 K7EMV3 H3F3B;H3F3A;HIST2H3A;HIST3H3;HIST1H3A Histone H3;Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1 0 126.03 0.013086 60572000 5864.6 4512 10021 6111.4 3931.8 4316.7 4370.9 6550.7 6428.1 8296 FALSE TRUE 5946.722494 5004.635419 7491.074612 5719.442158 4467.377726 5082.206136 5200.255457 5994.177147 7045.547727 6605.270646 0.900299596 0.757673029 1.134105628 0.86589066 0.676335303 0.76941679 0.787288778 0.907483958 1.066655419 1 12.68940196 -8.597573832 4.365784695 1.03012329 0.841530344 0.298600607 0.11605264 0.291424634 10.46055154 0.092069424 0.03209521 2.53E-09 8.597573832 -0.188592946 EIEHVMYHDWR ddPTM_K562_Paclitaxel_30min_R1 2 EIEHVMYHDWR 11 0 C9JJ19;P82930 C9JJ19 MRPS34 "28S ribosomal protein S34, mitochondrial" 0 ; 110.93 0.0042131 22314000 5483.8 5204.4 5246.3 4994.3 4038.8 4426.3 5400.7 6092.7 5871.9 6995.3 FALSE TRUE 5560.590119 5772.633992 3921.80668 4673.987952 4588.952937 5211.242157 6425.454631 5575.087106 6435.922231 5569.65402 0.998372628 1.03644391 0.704138294 0.839188204 0.823920646 0.935649169 1.153654178 1.00097548 1.155533577 1 12.443372 -7.596894475 5.537141787 1.076389574 0.87712714 0.469795446 0.099112217 0.191980351 10.43017347 0.040231117 0.030990696 2.53E-08 7.596894475 -0.199262434 EIES(ph)SPQYR ddPTM_K562_Paclitaxel_30min_R1 1 EIESSPQYR 9 0 H3BUF6;Q8WWM7-7;H3BSK9;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 EIES(0.5)S(0.5)PQYR 123.62 0.0019853 68961000 3497.5 3211.7 5099 3883.2 3190.3 3384.7 3038.4 3743.3 3390.5 4339.9 TRUE FALSE 3546.475791 3562.364267 3811.694386 3634.148933 3624.872872 3984.929021 3614.920538 3425.2833 3716.172674 3455.425998 1.026349803 1.030947926 1.103104042 1.051722403 1.049037912 1.153238132 1.046157707 0.991276706 1.075460067 1 11.75464787 -7.998989776 24.99925932 1.023764464 1.069892028 0.211133993 0.040644616 53.66695234 1328033.539 0.017296998 0.01155188 1.00E-08 7.998989776 0.046127564 EIFDSR ddPTM_K562_Paclitaxel_30min_R1 2 EIFDSR 6 0 P06733;K7EM90;A0A2R8Y6G6;K7ERS8;A0A2R8Y879;A0A2R8YEM5;A0A2R8Y798;A0A2R8YEG5 P06733 ENO1 Alpha-enolase;Enolase 0 ; 123.99 0.012377 70554000 10310.5 9785.4 13362 10713.1 9723.2 9828.1 10111.1 11706.1 11262.1 12293.7 FALSE TRUE 10454.87881 10853.80306 9988.597841 10026.00972 11047.66446 11570.97554 12029.62844 10711.59374 12343.87503 9788.237192 1.068106402 1.108861877 1.020469533 1.024291659 1.128667424 1.182130686 1.228988244 1.094333283 1.261092757 1 13.25683335 -6.932484434 4.911151329 1.163264973 1.057313416 0.292110881 0.071378634 0.235142072 10.96118028 0.021402624 0.024257747 1.17E-07 6.932484434 -0.105951557 EIHQDWANR ddPTM_K562_Paclitaxel_30min_R1 1 EIHQDWANR 9 0 Q8WUW1;Q8WUW1-2 Q8WUW1 BRK1 Protein BRICK1 0 109.44 0.013591 11061000 1477 1640.3 1748.8 1768.9 1582 1549.2 1411.8 1610.8 1085.2 1872.6 FALSE TRUE 1497.682557 1819.393501 1307.293811 1655.450671 1797.495183 1823.928868 1679.68168 1473.952486 1189.438309 1490.963092 1.004506795 1.22028071 0.876811651 1.110323039 1.205593346 1.223322615 1.126574956 0.98859086 0.797765092 1 10.54202883 -8.455183154 3.983714362 0.895659045 1.112097027 0.376935025 0.110060911 0.231613373 7.080885506 0.071317956 0.029817696 3.51E-09 8.455183154 0.216437982 EIIDLVLDR ddPTM_K562_Paclitaxel_30min_R1 3 EIIDLVLDR 9 0 P68363;Q71U36;Q9BQE3;F8VVB9;F8VQQ4;Q71U36-2;F5H5D3;A0A1W2PQM2;F8VS66;F8VRZ4 P68363 TUBA1B;TUBA1A;TUBA1C Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain 0 ;; 155.58 3.90E-05 114581600 12350 11803.1 13537.1 12366.7 11267.2 10565.8 13253.2 16262.2 9927.5 17795.8 FALSE TRUE 12522.9381 13091.80237 10119.49168 11573.55521 12801.9834 12439.49628 15767.92551 14880.6246 10881.08073 14169.00619 0.883826144 0.923974638 0.714199115 0.816821946 0.903520206 0.877937105 1.112846258 1.050223594 0.767949466 1 13.79045095 -7.5461169 24.46533685 0.988147587 0.848173938 0.295875405 0.098510465 233.3618898 245682.7099 0.038544617 0.029858506 2.84E-08 7.5461169 -0.139973649 EIIEFPILK ddPTM_K562_Paclitaxel_30min_R1 2 EIIEFPILK 9 0 H0Y4B0 H0Y4B0 ERI3 0 ; 90.601 0.013198 16346500 11354.1 10393 12948 11717.2 9664.6 9529.5 7930.6 10040.2 17353.2 11753.9 FALSE TRUE 11513.09243 11527.74289 9679.117261 10965.71124 10981.08214 11219.42302 9435.389949 9187.222341 19020.0524 9358.448728 1.230235135 1.231800614 1.034265138 1.171744544 1.173387007 1.198854997 1.008221579 0.98170355 2.032393717 1 13.19205369 -8.697586717 24.99999895 1.516322318 1.130296809 0.283229239 0.246514371 62.28928413 24387.41296 0.151483911 0.057255465 2.01E-09 8.697586717 -0.386025509 EIKDSTS(ph)QHDDDNISTTSGFSSR ddPTM_K562_Paclitaxel_30min_R1 1 EIKDSTSQHDDDNISTTSGFSSR 23 1 P49790-2;P49790;P49790-3 P49790-2 NUP153 Nuclear pore complex protein Nup153 1 EIKDS(0.432)T(0.112)S(0.456)QHDDDNISTTSGFSSR 58.758 0.011801 18077000 1014 642 1529.7 1097.3 708.97 733.99 647.44 879.47 708.88 895.07 TRUE FALSE 1028.199128 712.0957311 1143.508316 1026.924089 805.543717 864.1528208 770.2883601 804.753534 776.9710914 712.6542427 1.442774163 0.999216294 1.604576592 1.440985022 1.130342975 1.212583563 1.080872482 1.129234187 1.090249724 1 9.477058486 -6.776552378 22.71595055 1.117626712 1.361889156 0.4223849 0.151154559 86.57291442 130124.3867 0.047198655 0.05379397 1.67E-07 6.776552378 0.244262445 EILS(ph)PLFPR ddPTM_K562_Paclitaxel_30min_R1 1 EILSPLFPR 9 0 A0A2R8YH03;Q5VWN6 A0A2R8YH03 FAM208B Protein FAM208B 1 EILS(1)PLFPR 99.788 0.011207 3308700 470.01 680.04 579.36 619.71 515.03 647.79 578.23 668.9 501.56 803.25 TRUE FALSE 476.5915901 754.2890669 433.0934026 579.9645743 585.1858055 762.6664611 687.9461239 612.0727699 549.737079 639.5472091 0.745201579 1.179411084 0.677187542 0.906836221 0.915000171 1.192510029 1.075676845 0.957040796 0.859572321 1 9.320907047 -7.024582934 24.16453749 1.02192378 0.887771473 0.172041625 0.145988494 934.0702216 918170.8399 0.047751248 0.048003788 9.45E-08 7.024582934 -0.134152307 EILSEVER ddPTM_K562_Paclitaxel_30min_R1 3 EILSEVER 8 0 B4DUR8;P49368-2;P49368 B4DUR8 CCT3 T-complex protein 1 subunit gamma 0 ;; 131.03 0.0011212 39800000 5106.4 4960.1 6935.6 5995.7 5227 4961.8 5051.5 6161.8 4627.4 6038.9 FALSE TRUE 5177.905355 5501.660492 5184.622002 5611.162638 5939.005894 5841.705563 6009.995754 5638.316629 5071.882446 4808.168865 1.076897567 1.144231962 1.078294492 1.16700615 1.235190789 1.214954326 1.249955216 1.172653621 1.054846988 1 12.23127185 -6.326554031 7.39729376 1.173415982 1.104366499 0.073299823 0.076541511 0.542336846 54.58559409 0.021468723 0.032005812 4.71E-07 6.326554031 -0.069049483 EIPSATQS(ph)PISK ddPTM_K562_Paclitaxel_30min_R1 3 EIPSATQSPISK 12 0 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 EIPS(0.085)AT(0.124)QS(0.632)PIS(0.16)K;EIPSAT(0.005)QS(0.991)PIS(0.003)K;EIPSAT(0.004)QS(0.935)PIS(0.061)K 194.67 5.99E-05 727900000 9814 8004.5 15598.6 10909.1 8043.3 7086.2 7149.7 10513.3 10077.7 11934.6 TRUE FALSE 9951.426279 8878.458379 11660.54051 10209.43915 9138.933634 8342.838075 8506.318251 9620.129543 11045.70811 9502.321969 1.047262586 0.934346195 1.227125385 1.074415199 0.961757943 0.877978888 0.895183122 1.012397767 1.162422001 1 13.21406438 -4.905560973 19.46463083 1.013745484 3.357180457 0.007170103 0.106303251 3110.648361 677695.4328 0.027614795 18366.19377 1.24E-05 4.905560973 2.343434973 EIPSATQS(ph)PISKK ddPTM_K562_Paclitaxel_30min_R1 2 EIPSATQSPISKK 13 1 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 EIPSAT(0.003)QS(0.989)PIS(0.008)KK;EIPS(0.007)AT(0.31)QS(0.682)PISKK 127.18 0.001485 47982000 5190.5 3946.4 11394.4 6091.1 4016.8 3765.3 3412.7 5952.7 5676.2 7815.7 TRUE FALSE 5263.183014 4377.281298 8517.742796 5700.444109 4563.956165 4433.023088 4060.24201 5446.980979 6221.424372 6222.85605 0.845782543 0.703419983 1.368783518 0.91604949 0.733418245 0.712377573 0.65247243 0.875318493 0.999769932 1 12.60336116 -6.533028232 22.8329607 0.809531978 0.978517506 0.100261383 0.190342105 151.2233511 340197.3495 0.058304641 0.075398457 2.93E-07 6.533028232 0.168985528 EIPSLS(ph)PTIPR ddPTM_K562_Paclitaxel_30min_R1 1 EIPSLSPTIPR 11 0 Q9ULD5 Q9ULD5 ZNF777 Zinc finger protein 777 1 EIPS(0.01)LS(0.741)PT(0.249)IPR 147.62 0.00031993 7799900 1795.7 1872.2 2477.3 2037.6 1640.5 1912.2 1805.9 1924 1302.1 2294.9 TRUE FALSE 1820.84534 2076.613127 1851.874976 1906.917456 1863.963874 2251.301821 2148.560098 1760.544191 1427.172523 1827.19812 0.996523212 1.136501348 1.013505298 1.043629278 1.020121383 1.23210603 1.17587692 0.963521236 0.78107158 1 10.83541736 -8.492111525 6.890600779 0.883926151 1.087577631 0.468985066 0.086846329 0.156281796 26.81877867 0.051397276 0.0231492 3.22E-09 8.492111525 0.20365148 EIQNGNLHES(ph)DSESVPR ddPTM_K562_Paclitaxel_30min_R1 4 EIQNGNLHESDSESVPR 17 0 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2 Q86UP2-2 KTN1 Kinectin 1 EIQNGNLHES(1)DSESVPR;EIQNGNLHES(0.999)DS(0.001)ESVPR;EIQNGNLHES(0.998)DS(0.002)ESVPR;EIQNGNLHES(0.999)DS(0.001)ESVPR 214.3 3.86E-23 403924000 8934.6 8282.7 10980 9105.3 7529.4 7712.4 8129.2 9874.2 7356.4 10499.6 TRUE FALSE 9059.711966 9187.033196 8207.963201 8521.326812 8555.031754 9080.085853 9671.673263 9035.325077 8063.015089 8359.775757 1.083726673 1.098956894 0.981840116 1.019324807 1.023356607 1.086163806 1.156929748 1.080809503 0.96450136 1 13.02924853 -8.760489956 24.99989008 0.982250656 1.065329885 0.33956545 0.046917236 31.76808052 836702.253 0.040688753 0.013335862 1.74E-09 8.760489956 0.083079229 EISPGS(ph)GPGEIR ddPTM_K562_Paclitaxel_30min_R1 4 EISPGSGPGEIR 12 0 H0Y5B0;E9PK52;E9PHY5;O43491-4;O43491;E9PMG5;E9PMV8;Q6R5J7 H0Y5B0 EPB41L2 Band 4.1-like protein 2 1 EIS(0.04)PGS(0.96)GPGEIR;EIS(0.139)PGS(0.861)GPGEIR;EIS(0.045)PGS(0.955)GPGEIR;EIS(0.144)PGS(0.856)GPGEIR 120.59 4.42E-09 73023000 4432.46 4168.83 5618.64 5232.83 4362.75 4562.74 4454.53 5400.71 3098.88 5742.09 TRUE FALSE 4494.528115 4623.996957 4200.144842 4897.219705 4957.030412 5371.877875 5299.753813 4941.885975 3396.54127 4571.848906 0.983087632 1.011406337 0.918697212 1.071168318 1.084250708 1.174990247 1.159214559 1.080938167 0.742925092 1 12.15856201 -6.283167129 23.73568986 1.059993965 0.97509798 0.068305724 0.115289165 1024.785523 1119486.749 0.033763872 0.050144831 5.21E-07 6.283167129 -0.084895985 EISS(ph)PARPCSFEEAMK ddPTM_K562_Paclitaxel_30min_R1 1 EISSPARPCSFEEAMK 16 1 O94916-2;O94916;O94916-4;O94916-5 O94916-2 NFAT5 Nuclear factor of activated T-cells 5 1 EIS(0.147)S(0.853)PARPCSFEEAMK 113.14 0.00061476 34986000 1458.3 1348.9 2605 1892.5 1186.7 1265.9 1269.8 1671.8 1488.8 2274.2 TRUE FALSE 1478.720699 1496.177464 1947.335532 1771.123521 1348.348631 1490.389591 1510.737921 1529.770155 1631.805892 1810.716792 0.816649355 0.826290158 1.075450087 0.978133924 0.744649101 0.823093704 0.834331425 0.844842309 0.901193328 1 10.8223452 -5.56094422 24.99965019 0.891062376 0.819056931 0.098573941 0.092177765 389.2789731 255659.0548 0.025375341 0.067137051 2.75E-06 5.56094422 -0.072005445 EISS(ph)SPTSK ddPTM_K562_Paclitaxel_30min_R1 1 EISSSPTSK 9 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 EIS(0.001)S(0.65)S(0.349)PTSK 157.97 4.91E-06 38939000 5388.5 4474.1 8806 5784.9 4561.2 3758.7 3768.9 5896.8 4918.5 5699.8 TRUE FALSE 5463.955625 4962.597368 6582.816389 5413.882406 5182.512662 4425.25267 4484.0291 5395.830033 5390.943901 4538.177631 1.203997743 1.093522064 1.450541809 1.192963971 1.141981007 0.975116672 0.988068221 1.18898608 1.187909408 1 12.14789736 -6.823884153 3.18935406 1.074430501 1.243387336 0.343048216 0.108747246 0.308214365 6.349754128 0.036909045 0.044181931 1.50E-07 6.823884153 0.168956835 EISSS(ph)PTSK ddPTM_K562_Paclitaxel_30min_R1 1 EISSSPTSK 9 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 EIS(0.018)S(0.219)S(0.759)PT(0.003)SK 147.3 0.00035239 51503000 6606.9 5406.3 10582 7072 5712.8 4543.5 4278.4 6257.2 5778.4 7731.9 TRUE FALSE 6699.416984 5996.578117 7910.443223 6618.433573 6490.980079 5349.225931 5090.204065 5725.611804 6333.441139 6156.134536 1.088250581 0.97408172 1.284969193 1.075095668 1.054392174 0.868926093 0.826850686 0.930066062 1.028801613 1 12.58780905 -7.083841088 3.817450584 0.920698407 1.105918161 0.460107591 0.089816609 0.216274789 5.885755001 0.031465062 0.032220068 8.24E-08 7.083841088 0.185219754 EIST(ph)PTHWSK ddPTM_K562_Paclitaxel_30min_R1 2 EISTPTHWSK 10 0 F5H1H2;F5H2E6;A0A0C4DGG8;Q8IX12-2;Q8IX12 F5H1H2 CCAR1 Cell division cycle and apoptosis regulator protein 1 1 EIS(0.026)T(0.973)PT(0.001)HWSK;EIS(0.176)T(0.823)PT(0.001)HWSK 111.86 0.011712 18833700 7025.9 6657.5 11907.7 8697.6 6492.4 5542.7 5284.3 8477.5 4737.8 9720.5 TRUE FALSE 7124.284277 7384.388364 8901.453862 8139.774865 7376.774797 6525.620022 6286.968339 7757.28346 5192.886859 7739.456764 0.920514772 0.95412231 1.150139362 1.051724315 0.953138576 0.84316254 0.812326825 1.002303352 0.670962707 1 12.91801659 -7.042075229 3.692083089 0.863445828 1.022982364 0.321123628 0.105116157 0.276359867 7.801663578 0.034833656 0.036553743 9.08E-08 7.042075229 0.159536536 EKADREVQAEQPSSSS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 EKADREVQAEQPSSSSPR 18 2 Q9Y388;A0A1W2PP04 Q9Y388 RBMX2 "RNA-binding motif protein, X-linked 2" 1 EKADREVQAEQPS(0.008)S(0.036)S(0.228)S(0.729)PR 57.142 0.026299 55226000 2817.9 2748.6 5031.2 2919.6 2246.1 1946 2022 2805.1 4588.8 3411.3 TRUE FALSE 2857.359294 3048.701443 3761.011335 2732.349924 2552.056847 2291.095777 2405.663944 2566.789246 5029.574743 2716.075187 1.052017745 1.122465776 1.384722835 1.005992005 0.939612003 0.843531794 0.88571331 0.945036153 1.85178038 1 11.4073077 -11.51508136 6.789405611 0.999951691 1.094696761 0.009965333 0.286523888 0.000210821 1.51E-05 0.279151289 0.06766965 3.05E-12 11.51508136 0.09474507 EKLQEEGGGS(ph)DEEETGS(ph)PSEDGMQSAR ddPTM_K562_Paclitaxel_30min_R1 1 EKLQEEGGGSDEEETGSPSEDGMQSAR 27 1 Q13610-2;Q13610 Q13610-2 PWP1 Periodic tryptophan protein 1 homolog 2 EKLQEEGGGS(0.997)DEEET(0.068)GS(0.745)PS(0.184)EDGMQS(0.006)AR 69.874 0.00067529 20744000 1232.3 1076.6 2218 1134.7 989.75 732.19 837.09 1203.8 1223.2 1637 TRUE FALSE 1249.556002 1194.146829 1658.038468 1061.925421 1124.570707 862.033616 995.9234576 1101.529676 1340.693825 1303.378501 0.958705396 0.916193437 1.272108191 0.814748302 0.862812073 0.661383946 0.764109164 0.845134146 1.028629691 1 10.34804039 EKLQEEGGGS(ph)DEEETGSPS(ph)EDGMQSAR ddPTM_K562_Paclitaxel_30min_R1 1 EKLQEEGGGSDEEETGSPSEDGMQSAR 27 1 Q13610-2;Q13610 Q13610-2 PWP1 Periodic tryptophan protein 1 homolog 2 EKLQEEGGGS(0.93)DEEET(0.267)GS(0.385)PS(0.414)EDGMQS(0.005)AR 57.397 0.0045215 21341000 633.36 524.67 1127.5 568.78 434.87 452.52 377.06 690.02 549.1 881.45 TRUE FALSE 642.2289941 581.9552449 842.8486803 532.3009966 494.1066564 532.7680683 448.6051666 631.398494 601.8435084 701.8100062 0.915103787 0.829220501 1.200964182 0.758468805 0.704046184 0.759134329 0.639211699 0.899671547 0.85755903 1 9.454936707 EKLQEEGGGS(ph)DEEETGSPSEDGMQSAR ddPTM_K562_Paclitaxel_30min_R1 7 EKLQEEGGGSDEEETGSPSEDGMQSAR 27 1 Q13610-2;Q13610 Q13610-2 PWP1 Periodic tryptophan protein 1 homolog 1 EKLQEEGGGS(0.963)DEEET(0.023)GS(0.013)PS(0.001)EDGMQSAR;EKLQEEGGGS(1)DEEETGSPSEDGMQSAR;EKLQEEGGGS(0.937)DEEET(0.04)GS(0.02)PS(0.003)EDGMQSAR;EKLQEEGGGS(1)DEEETGSPSEDGMQSAR;EKLQEEGGGS(1)DEEETGSPSEDGMQSAR;EKLQEEGGGS(0.877)DEEET(0.099)GS(0.018)PS(0.006)EDGMQSAR;EKLQEEGGGS(0.847)DEEET(0.095)GS(0.043)PS(0.015)EDGMQSAR 132.88 2.17E-18 649619000 12044 8825.56 20195.2 12710.6 9879.21 8680.56 7697.55 11578.19 11371.65 14464.7 TRUE FALSE 12212.65316 9789.164487 15096.67199 11895.39901 11224.92566 10219.93543 9158.119929 10594.55049 12463.94779 11516.7862 1.060421974 0.849990989 1.310840692 1.032874866 0.974657814 0.887394735 0.795197529 0.919922477 1.082241832 1 13.49145056 -6.83827264 3.313370243 0.924329294 1.067352573 0.183939904 0.125026874 0.400084266 8.787562138 0.041360575 0.049007998 1.45E-07 6.83827264 0.143023279 EKLQSFDS(ph)PER ddPTM_K562_Paclitaxel_30min_R1 3 EKLQSFDSPER 11 1 E9PGM9;P78332-2;P78332 E9PGM9 RBM6 RNA-binding protein 6 1 EKLQS(0.006)FDS(0.994)PER;EKLQSFDS(1)PER;EKLQSFDS(1)PER 127.78 0.0039749 191045000 6172.91 5873.7 10781.8 7148.9 5052.92 4712.86 5055.96 6508.3 5624 8629.1 TRUE FALSE 6259.349785 6515.01043 8059.801242 6690.401551 5741.213251 5548.619549 6015.302016 5955.379291 6164.210329 6870.484683 0.911049231 0.948260673 1.17310519 0.973788875 0.835634386 0.807602346 0.875528044 0.866806283 0.89720167 1 12.74619616 -6.628201953 5.453156053 0.87059759 1.014986908 0.358821849 0.079479031 0.210200442 9.37502563 0.024147336 0.031343489 2.35E-07 6.628201953 0.144389319 EKLS(ph)S(ph)GQY(ph)PNLET(ph)FALDVR ddPTM_K562_Paclitaxel_30min_R1 1 EKLSSGQYPNLETFALDVR 19 1 Q9UIF8-4;Q9UIF8-2;Q9UIF8-5;Q9UIF8-3;Q9UIF8 Q9UIF8-4 BAZ2B Bromodomain adjacent to zinc finger domain protein 2B 4 EKLS(1)S(1)GQY(1)PNLET(1)FALDVR 50.188 0.030222 20462000 345.27 433.43 407.93 440.49 331.72 469.06 511.98 311.82 323 383.4 TRUE FALSE 350.1048452 480.7533532 304.9430263 412.238943 376.9058801 552.2412051 609.1255323 285.3289447 354.0255932 305.2628695 1.146896266 1.574883162 0.998952237 1.350439192 1.234692842 1.809067725 1.995413111 0.93469915 1.159740108 1 8.253908309 EKMVS(ph)NTKSVDT(ph)KAS(ph)S(ph)SK ddPTM_K562_Paclitaxel_30min_R1 1 EKMVSNTKSVDTKASSSK 18 3 Q9HCM1 Q9HCM1 KIAA1551 Uncharacterized protein KIAA1551 4 EKMVS(0.439)NT(0.439)KS(0.122)VDT(0.952)KAS(0.952)S(0.952)S(0.145)K 57.973 0.027356 99096000 1210.2 1327 1366.3 1274.1 1568.8 1264.5 1427.7 1606 1513 1558.4 TRUE FALSE 1227.146534 1471.886348 1021.360667 1192.384929 1782.49712 1488.741321 1698.598622 1469.560276 1658.33041 1240.797225 0.988998452 1.186242456 0.823148736 0.960982911 1.436574071 1.199826443 1.368957464 1.184367797 1.336503965 1 10.27705165 -6.742068728 24.99972193 1.266592057 0.99196482 0.46294939 0.139198231 206.7914942 266883.5291 0.039321418 0.050685583 1.81E-07 6.742068728 -0.274627237 EKPELSEPSHLNGPSS(ph)DPEAAFLSR ddPTM_K562_Paclitaxel_30min_R1 2 EKPELSEPSHLNGPSSDPEAAFLSR 25 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 EKPELSEPSHLNGPS(0.125)S(0.875)DPEAAFLSR;EKPELSEPSHLNGPS(0.027)S(0.973)DPEAAFLSR 140.69 1.09E-19 164472000 5055.6 3976.8 7564.5 5222.8 4090 3645 3341.47 5104.4 4392.8 6414.2 TRUE FALSE 5126.393998 4411.000473 5654.748418 4887.832984 4647.127244 4291.389572 3975.496489 4670.749359 4814.748068 5106.982519 1.003800968 0.863719517 1.107258229 0.957088254 0.909955581 0.840298465 0.778443332 0.914581035 0.942777472 1 12.31825541 -6.770307714 3.480790598 0.882585097 0.985552857 0.217585231 0.078460627 0.329194368 8.414536068 0.025045556 0.030801852 1.70E-07 6.770307714 0.10296776 EKRT(ph)PAPEPEPCEASELPAKR ddPTM_K562_Paclitaxel_30min_R1 1 EKRTPAPEPEPCEASELPAKR 21 3 H0Y5D5;A0A494C0L7;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-3;Q9ULV3-4;Q9ULV3-2;Q9ULV3 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 1 EKRT(1)PAPEPEPCEASELPAKR 47.618 0.029623 39687000 1940.1 1193.7 3720.6 2103.2 1492.8 1076.5 1115.3 2093.3 1740.4 2991.4 TRUE FALSE 1967.267386 1324.032203 2781.288514 1968.310166 1696.144633 1267.40216 1326.922353 1915.461099 1907.573196 2381.751038 0.82597524 0.555907054 1.167749471 0.826413061 0.712141868 0.532130412 0.55712051 0.804223896 0.800912088 1 11.2178069 -4.880413662 20.12173422 0.760336964 17.5679229 0.00296521 0.192055016 5665.506372 947878.5104 0.047895732 24932.45934 1.32E-05 4.880413662 16.80758594 EKTATCHSSS(ph)SPPIDAASAEPYGFR ddPTM_K562_Paclitaxel_30min_R1 2 EKTATCHSSSSPPIDAASAEPYGFR 25 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 EKT(0.008)AT(0.008)CHS(0.047)S(0.159)S(0.389)S(0.389)PPIDAASAEPYGFR;EKT(0.005)AT(0.005)CHS(0.268)S(0.09)S(0.364)S(0.268)PPIDAASAEPYGFR 67.194 0.0016572 42402000 3177.5 3356.6 5338.6 3776.7 3589 2673.5 2910.2 4166.5 3950.4 4723.7 TRUE FALSE 3221.994803 3723.084939 3990.804403 3534.479366 4077.882562 3147.607687 3462.395258 3812.529819 4329.853571 3761.007347 0.856683996 0.989916955 1.061099869 0.939769333 1.084252751 0.836905487 0.920603162 1.013699115 1.151248368 1 11.87690341 -8.526510483 24.09271748 1.077907437 0.961212185 0.259332922 0.081164118 98.26147266 651805.6125 0.053744208 0.020550951 2.98E-09 8.526510483 -0.116695252 EKVAMEYLQSAS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 EKVAMEYLQSASR 13 1 F8VVE9;Q15256-3;Q15256-4;Q15256-5;Q15256 F8VVE9 PTPRR Receptor-type tyrosine-protein phosphatase R 1 EKVAMEYLQS(0.06)AS(0.94)R 61.165 0.030645 0 4738.2 4206.8 5308.2 4757.2 4416.2 3723.9 3669.2 4503.9 4552.4 4681.1 TRUE FALSE 4804.549419 4666.11265 3968.079259 4452.094484 5017.761207 4384.281379 4365.411545 4121.265583 4989.678361 3727.08925 1.28908891 1.251945509 1.064659039 1.194523175 1.346294888 1.176328519 1.171265632 1.105759832 1.338760095 1 11.86383365 -11.50749531 3.02033575 0.993209356 1.209607453 0.346828938 0.08835902 21018105.65 22962981.28 1173684.089 0.021960341 3.11E-12 11.50749531 0.216398097 EKY(ph)PEKFNS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 EKYPEKFNSR 10 2 H0YJH4;G3V4E1;P23743 H0YJH4 DGKA Diacylglycerol kinase;Diacylglycerol kinase alpha 2 EKY(1)PEKFNS(1)R 65.278 0.022014 0 923.36 998.12 894.06 782.14 659.53 741.18 825.38 1009.7 676.48 1067.9 TRUE FALSE 936.2898888 1107.098117 668.3434954 731.9770411 749.3691519 872.6178663 981.9915462 923.9196827 741.4589266 850.2613938 1.101178879 1.302067958 0.786044739 0.860884719 0.881339736 1.026293646 1.154929006 1.08663017 0.872036449 1 9.731762623 -5.74950084 24.9994379 0.96480544 1.201623423 0.411978821 0.115979983 240.4877677 503575.257 0.032344083 0.084129577 1.78E-06 5.74950084 0.236817983 ELAEAAKEPLPVEQDDDIEVIVDETSDHT(ph)EETSPVR ddPTM_K562_Paclitaxel_30min_R1 1 ELAEAAKEPLPVEQDDDIEVIVDETSDHTEETSPVR 36 1 C9JAY7;E7EVC7;Q676U5-4;Q676U5-5;Q676U5-3;Q676U5-2;Q676U5;C9JK97;C9J1B2 C9JAY7 ATG16L1 Autophagy-related protein 16-1 1 ELAEAAKEPLPVEQDDDIEVIVDET(0.078)S(0.078)DHT(0.623)EET(0.111)S(0.111)PVR 88.834 3.30E-10 14766000 2463.4 2090.2 4284.1 2699.6 2167.4 2202.2 2227.9 3045.3 2515.5 2973.2 TRUE FALSE 2497.8952 2318.415105 3202.52597 2526.459739 2462.636574 2592.72925 2650.632395 2786.582757 2757.125015 2367.260208 1.055184044 0.979366399 1.352840706 1.067250542 1.040289769 1.095244723 1.119704706 1.177134118 1.164690305 1 11.20900258 -7.946261292 6.044261722 1.132016108 1.100791616 0 0.10281425 1.173423634 91.97035495 0.044681087 0.029680313 1.13E-08 7.946261292 -0.031224492 ELAEAAKEPLPVEQDDDIEVIVDETSDHTEETS(ph)PVR ddPTM_K562_Paclitaxel_30min_R1 1 ELAEAAKEPLPVEQDDDIEVIVDETSDHTEETSPVR 36 1 C9JAY7;E7EVC7;Q676U5-4;Q676U5-5;Q676U5-3;Q676U5-2;Q676U5;C9JK97;C9J1B2 C9JAY7 ATG16L1 Autophagy-related protein 16-1 1 ELAEAAKEPLPVEQDDDIEVIVDET(0.006)S(0.006)DHT(0.055)EET(0.282)S(0.651)PVR 69.606 4.31E-06 16544000 1384 1123.4 2639.2 1630.5 1435.5 1134.8 1112.5 1743 1573.9 1856.5 TRUE FALSE 1403.38027 1246.056611 1972.901319 1525.927028 1631.039403 1336.040847 1323.591067 1594.921271 1725.080127 1478.144281 0.949420356 0.842987134 1.334714983 1.032326172 1.103437211 0.903863624 0.89544105 1.07900243 1.167058013 1 10.52957138 ELAGEMVSMS(ph)YFSR ddPTM_K562_Paclitaxel_30min_R1 1 ELAGEMVSMSYFSR 14 0 H0YDY4 H0YDY4 PEX19 1 ELAGEMVS(0.118)MS(0.461)Y(0.07)FS(0.35)R 49.31 0.031131 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 ELAPAWEDTS(ph)PEQDNR ddPTM_K562_Paclitaxel_30min_R1 3 ELAPAWEDTSPEQDNR 16 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 ELAPAWEDT(0.002)S(0.998)PEQDNR;ELAPAWEDT(0.034)S(0.966)PEQDNR;ELAPAWEDT(0.003)S(0.997)PEQDNR 242.9 3.43E-51 167222000 9271.1 9558.3 11363.6 10420.9 9448.9 9280.5 9440.8 11813.5 4266.48 13135.4 TRUE FALSE 9400.924004 10601.90752 8494.718637 9752.550116 10736.00015 10926.26637 11232.14252 10809.86944 4676.294467 10458.39827 0.898887551 1.013721915 0.81223897 0.932508962 1.026543441 1.044736114 1.073983054 1.033606596 0.44713295 1 13.3523743 -8.715263942 24.9999979 0.723560751 0.980413894 0.33399639 0.144573515 114.5555997 62021.93898 0.092676063 0.035027963 1.93E-09 8.715263942 0.256853143 ELAYLSELPPTPLHVSEDSSS(ph)PER ddPTM_K562_Paclitaxel_30min_R1 1 ELAYLSELPPTPLHVSEDSSSPER 24 0 Q96EB6;B0QZ35;E9PC49 Q96EB6 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 ELAYLSELPPT(0.008)PLHVS(0.065)EDS(0.276)S(0.276)S(0.374)PER 70.889 0.0010592 7344000 591.62 668.66 757 510.73 552.85 513.22 443.04 594.52 475.12 596.9 TRUE FALSE 599.9045053 741.6665601 565.8859875 477.9740637 628.1575298 604.232361 527.1045272 544.0118151 520.7573989 475.2514524 1.262288631 1.560577156 1.190708592 1.005728781 1.321737212 1.271395086 1.10910661 1.144682068 1.095751305 1 8.892547225 -2 0.136636576 0.956413399 2.432195483 0.381852165 0.12522585 84.82919046 0.777870856 0.60667886 24.33723182 0.01 2 1.475782084 ELDDDERDVDAS(ph)PTAGLQEAATLAPTRR ddPTM_K562_Paclitaxel_30min_R1 2 ELDDDERDVDASPTAGLQEAATLAPTRR 28 2 Q92508 Q92508 PIEZO1 Piezo-type mechanosensitive ion channel component 1 1 ELDDDERDVDAS(0.815)PT(0.185)AGLQEAATLAPTRR;ELDDDERDVDAS(0.785)PT(0.215)AGLQEAATLAPTRR 69.98 0.00024516 57193000 968.72 759.19 1141.93 1049.67 1045.55 1024.8 859.49 969.07 910.26 944.83 TRUE FALSE 982.2850688 842.0809316 853.6356483 982.3488643 1187.971611 1206.533891 1022.573741 886.7414548 997.6945401 752.2731274 1.305755892 1.119381912 1.134741648 1.305840696 1.579175924 1.603850845 1.359311802 1.178749343 1.326239771 1 9.555112745 -4.356566886 16.14006609 1.306116547 1.252804389 0 0.184556481 0 0 0.045594893 0 4.40E-05 4.356566886 -0.053312158 ELDEEGS(ph)DPPLPGR ddPTM_K562_Paclitaxel_30min_R1 4 ELDEEGSDPPLPGR 14 0 C9JQV0;Q9BRJ6;H7C0T1;H7C2R9 C9JQV0 C7orf50 Uncharacterized protein C7orf50 1 ELDEEGS(1)DPPLPGR;ELDEEGS(1)DPPLPGR;ELDEEGS(1)DPPLPGR;ELDEEGS(1)DPPLPGR 171.26 4.39E-06 53824600 9983.8 9743.6 14444 11456.5 9499 8966.6 8634.9 10881.9 9933.3 13172.2 TRUE FALSE 10123.604 10807.4392 10797.43356 10721.73137 10792.92462 10556.70061 10273.3272 9957.414672 10887.43785 10487.69841 0.965283669 1.030487222 1.029533186 1.022314997 1.02910326 1.006579347 0.979559747 0.949437549 1.038115078 1 13.35641048 -7.578922488 5.109544464 0.987823118 1.017443065 0.133909001 0.027241088 0.325605481 17.79138616 0.010376734 0.008028125 2.64E-08 7.578922488 0.029619947 ELDLS(ph)ELDDPDSAYLQEAR ddPTM_K562_Paclitaxel_30min_R1 2 ELDLSELDDPDSAYLQEAR 19 0 Q9UER7-3;Q9UER7;Q9UER7-2;Q9UER7-5;Q9UER7-4 Q9UER7-3 DAXX Death domain-associated protein 6 1 ELDLS(1)ELDDPDSAYLQEAR;ELDLS(0.864)ELDDPDS(0.132)AY(0.004)LQEAR 130.77 4.53E-09 23001000 1465.92 1482.08 1565.72 1411.64 1425.18 1250.93 1374.02 1760.83 1193.16 2201.3 TRUE FALSE 1486.447403 1643.898506 1170.434621 1321.103729 1619.313644 1472.764872 1634.733122 1611.236501 1307.768349 1752.673852 0.848102687 0.937937486 0.667799443 0.753764728 0.923910426 0.840296026 0.932708114 0.919301956 0.746156136 1 10.77534184 -6.766811448 24.99961223 0.888971205 0.802039282 0.200637491 0.089491549 240.9751899 1121407.608 0.028042084 0.032724663 1.71E-07 6.766811448 -0.086931923 ELDLYDNQ ddPTM_K562_Paclitaxel_30min_R1 1 ELDLYDNQ 8 0 H7C118 H7C118 PPP1R7 0 64.757 0.021401 24042000 0 0 0 0 0 0 0 0 0 0 FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 ELDPSLVSANDS(ph)PSGMQTR ddPTM_K562_Paclitaxel_30min_R1 3 ELDPSLVSANDSPSGMQTR 19 0 Q5UIP0-2;Q5UIP0;H7C2B5 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 ELDPSLVS(0.002)ANDS(0.976)PS(0.022)GMQTR;ELDPSLVS(0.002)ANDS(0.994)PS(0.004)GMQTR;ELDPS(0.001)LVS(0.078)ANDS(0.694)PS(0.227)GMQTR 178.71 8.94E-15 259248000 10051.7 9578.4 12649.9 10200.6 9472.5 9004.8 9011.5 11044.1 10456.3 11720.7 TRUE FALSE 10192.45481 10624.2021 9456.276293 9546.379172 10762.81487 10601.67485 10721.38508 10105.83477 11460.67433 9332.014906 1.092203015 1.138468188 1.013315601 1.022970845 1.153321654 1.136054213 1.148882121 1.082920985 1.228102875 1 13.1879729 -6.774505462 24.99749202 1.130785146 1.068046903 0.163846381 0.06348203 389.0119031 744239.3638 0.019113822 0.021809424 1.68E-07 6.774505462 -0.062738243 ELDPSLVSANDSPS(ph)GMQTR ddPTM_K562_Paclitaxel_30min_R1 1 ELDPSLVSANDSPSGMQTR 19 0 Q5UIP0-2;Q5UIP0;H7C2B5 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 ELDPSLVS(0.003)ANDS(0.233)PS(0.761)GMQT(0.003)R 181.6 1.09E-15 279270000 3317.7 3503.7 4280.1 3714.8 3700 2903 3081 3712.9 3435.1 3897 TRUE FALSE 3364.158036 3886.245815 3199.535819 3476.549355 4204.002642 3417.80629 3665.603666 3397.46597 3765.056703 3102.789261 1.084236715 1.25250073 1.031180512 1.120459388 1.354910788 1.101527046 1.181389826 1.094971551 1.213442611 1 11.59935 -11.58593491 3.871129415 0.996007139 1.160023451 0.219281243 0.090225427 0.003085814 0.000330066 0.086702567 0.020542466 2.59E-12 11.58593491 0.164016312 ELDS(ph)EFEDLASDVR ddPTM_K562_Paclitaxel_30min_R1 1 ELDSEFEDLASDVR 14 0 Q8NEN9 Q8NEN9 PDZD8 PDZ domain-containing protein 8 1 ELDS(1)EFEDLASDVR 120.53 0.0010756 2428500 411.91 494.92 381.5 480.88 342.2 470.84 391.12 537.1 662.09 829.01 TRUE FALSE 417.6780109 548.9570393 285.1856067 450.0385091 388.8134335 554.3368631 465.3329782 491.4700025 725.6867028 660.0573069 0.632790527 0.831680876 0.432061889 0.681817328 0.589060116 0.839831417 0.704988754 0.744586867 1.099429845 1 9.366447476 -8.678966514 4.498634804 1.050054098 0.676901997 0.632478067 0.112840484 0.13000885 4.625824782 0.086783658 0.02903238 2.09E-09 8.678966514 -0.3731521 ELEEWYAR ddPTM_K562_Paclitaxel_30min_R1 4 ELEEWYAR 8 0 P09496-5;P09496-2;C9J8P9;F8WF69;P09496-4;P09496-3;P09496 P09496-5 CLTA Clathrin light chain A 0 ;;; 148.38 8.67E-05 58274000 7067.5 7637.7 10013.1 8079 7531 7211.4 7244.9 8400.2 5134.57 9160.7 FALSE TRUE 7166.466805 8471.609915 7485.169065 7560.8491 8556.849701 8490.240537 8619.581954 7686.550578 5627.76839 7293.744312 0.982549771 1.16148984 1.026245059 1.036621079 1.173176538 1.164044169 1.181777368 1.053855228 0.771588385 1 12.83244391 -8.599432707 6.806562035 0.889084192 1.106230035 0.51523972 0.083268046 0.166826956 11.99676414 0.056420339 0.020877008 2.52E-09 8.599432707 0.217145843 ELEGQEPEPRPTEEEPGS(ph)PWSGPDELEPVVQDGQRR ddPTM_K562_Paclitaxel_30min_R1 1 ELEGQEPEPRPTEEEPGSPWSGPDELEPVVQDGQRR 36 2 Q8IX07;A0A087WWQ0;A0A087WZP1 Q8IX07 ZFPM1 Zinc finger protein ZFPM1 1 ELEGQEPEPRPT(0.066)EEEPGS(0.915)PWS(0.019)GPDELEPVVQDGQRR 74.733 2.80E-07 9740300 540.23 553.1 442.06 598.75 340.1 357.88 414.23 577.07 494.13 694.43 TRUE FALSE 547.7948868 613.4893285 330.4564857 560.3488549 386.4273779 421.3449931 492.8279801 528.0443015 541.5933943 552.9047848 0.990758087 1.109575003 0.597673406 1.013463566 0.698904022 0.762057057 0.891343308 0.955036592 0.979541884 1 9.110887247 -8.271498363 3.059690851 0.982211405 0.858986111 0.115578976 0.144268161 0.61868629 11.74995663 0.089177179 0.040823457 5.35E-09 8.271498363 -0.123225294 ELEQHIQTS(ph)DPENFQSEER ddPTM_K562_Paclitaxel_30min_R1 2 ELEQHIQTSDPENFQSEER 19 0 Q96K76-2;Q96K76-4;Q96K76 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 1 ELEQHIQT(0.036)S(0.964)DPENFQSEER;ELEQHIQT(0.235)S(0.765)DPENFQSEER 130.17 5.21E-08 71082000 4065.8 3681.2 5322.9 4928.8 3954 4233 4107.4 5478.9 2800.8 5520 TRUE FALSE 4122.733744 4083.125865 3979.068062 4612.688828 4492.601742 4983.663116 4886.757708 5013.433247 3069.829354 4395.02097 0.938046433 0.929034444 0.905358152 1.049526011 1.022202573 1.133933865 1.111884958 1.140707469 0.698478887 1 12.10165433 -6.263454158 24.54430677 1.036622092 0.92463515 0.116760995 0.119413193 261.6322076 3187258.063 0.033080897 0.05195268 5.45E-07 6.263454158 -0.111986942 ELFDDPS(ph)YVNVQNLDK ddPTM_K562_Paclitaxel_30min_R1 2 ELFDDPSYVNVQNLDK 16 0 Q5T188;H0Y539;X6R6D0;P29353-5;P29353-3;P29353-2;P29353-7;P29353;P29353-6 Q5T188 SHC1 SHC-transforming protein 1 1 ELFDDPS(0.638)Y(0.362)VNVQNLDK;ELFDDPS(0.56)Y(0.44)VNVQNLDK 169.09 6.11E-53 54561000 3252.5 2682.81 5694.1 3497.86 2596.82 1934.84 2457.61 3226.82 2636.24 4909.7 TRUE FALSE 3298.045035 2975.728268 4256.554031 3273.522915 2950.550849 2277.956707 2923.928668 2952.6815 2889.462631 3909.100445 0.843683881 0.761230956 1.088883259 0.837410796 0.754790236 0.58273169 0.747979928 0.755335285 0.739163056 1 11.93262094 -6.662235613 4.219853798 0.741237826 0.894825079 0.180780837 0.12300114 0.31489155 10.14608297 0.036706027 0.047663053 2.18E-07 6.662235613 0.153587252 ELFDDPSY(ph)VNVQNLDK ddPTM_K562_Paclitaxel_30min_R1 1 ELFDDPSYVNVQNLDK 16 0 Q5T188;H0Y539;X6R6D0;P29353-5;P29353-3;P29353-2;P29353-7;P29353;P29353-6 Q5T188 SHC1 SHC-transforming protein 1 1 ELFDDPS(0.023)Y(0.977)VNVQNLDK 231.52 2.20E-39 58505000 3092.3 2435.4 5378.4 3345.2 2457 2157.6 1936 3193.7 2383.9 4239 TRUE FALSE 3135.601741 2701.305208 4020.556401 3130.653845 2791.684997 2540.220066 2303.345893 2922.375251 2612.884247 3375.089473 0.929042553 0.80036551 1.19124439 0.927576549 0.827143997 0.752637844 0.682454765 0.865866009 0.774167401 1 11.72071003 -6.74271325 3.965051524 0.798499555 0.970470936 0.261074707 0.118948606 0.270976914 9.36599574 0.0367803 0.045880661 1.81E-07 6.74271325 0.17197138 ELFPPSPS(ph)EMGELEATR ddPTM_K562_Paclitaxel_30min_R1 1 ELFPPSPSEMGELEATR 17 0 Q8WYA1-6;Q8WYA1-8;Q8WYA1-7;H0Y5R1;Q8WYA1-4;Q8WYA1-3;Q8WYA1-5;Q8WYA1-2;Q8WYA1 Q8WYA1-6 ARNTL2 Aryl hydrocarbon receptor nuclear translocator-like protein 2 1 ELFPPS(0.003)PS(0.935)EMGELEAT(0.061)R 66.702 0.028284 20926000 0 0 57.961 0 0 0 0 0 0 0 TRUE FALSE 0 0 43.3280287 0 0 0 0 0 0 0 0 ELFYEDR ddPTM_K562_Paclitaxel_30min_R1 1 ELFYEDR 7 0 Q13643 Q13643 FHL3 Four and a half LIM domains protein 3 0 114.6 0.023536 6770600 1461.6 1207.9 1766.6 1809.7 1498.2 1637.7 1534.4 1824.2 1259 1735.9 FALSE TRUE 1482.066909 1339.782607 1320.599981 1693.633942 1702.280205 1928.123101 1825.54439 1669.222824 1379.932575 1382.122627 1.072312167 0.969365945 0.95548684 1.225386162 1.231641948 1.395044884 1.320826643 1.207724113 0.998415443 1 10.43266991 -6.267219448 24.12667082 1.220514811 0.996086074 0.347861957 0.121227866 286.9553922 1197786.82 0.035018755 0.053634999 5.40E-07 6.267219448 -0.224428737 ELGS(ph)PTDEDSGQDQQLLR ddPTM_K562_Paclitaxel_30min_R1 1 ELGSPTDEDSGQDQQLLR 18 0 H0Y713;Q86YN6-6;Q86YN6-5;Q86YN6-4;Q86YN6-2;Q86YN6-3;Q86YN6 H0Y713 PPARGC1B Peroxisome proliferator-activated receptor gamma coactivator 1-beta 1 ELGS(0.8)PT(0.186)DEDS(0.013)GQDQQLLR 123.63 6.49E-06 11372000 812.39 837.46 1275.7 1001.7 922.84 820.1 853.64 739.67 768.01 1155.9 TRUE FALSE 823.7659664 928.8967149 953.6337573 937.4554454 1048.546432 965.5332202 1015.613734 676.8304166 841.7807921 920.3269455 0.8950797 1.009311658 1.036190195 1.018611321 1.139319496 1.049119799 1.103535802 0.735423884 0.914654076 1 9.846002658 -8.246585557 24.9979178 0.868779221 1.038694477 0.396035308 0.0856993 695.1144856 1169830.646 0.040114418 0.023037716 5.67E-09 8.246585557 0.169915256 ELHPQLLS(ph)PTK ddPTM_K562_Paclitaxel_30min_R1 2 ELHPQLLSPTK 11 0 E9PK89;Q8TBN0 E9PK89 RAB3IL1 Guanine nucleotide exchange factor for Rab-3A 1 ELHPQLLS(0.991)PT(0.009)K;ELHPQLLS(0.994)PT(0.006)K 170.66 0.00010436 58953000 7023.5 6625.9 12784.8 8517.6 6764.5 5713 5966.3 8174.3 4585.5 10145.8 TRUE FALSE 7121.850669 7349.338169 9557.11912 7971.319259 7685.939424 6726.120336 7098.374279 7479.842193 5025.957764 8078.080391 0.881626615 0.909787699 1.183092846 0.986783849 0.951456169 0.83263845 0.878720431 0.925943025 0.622172289 1 12.97979679 -7.102219066 3.079643302 0.848617572 0.997037718 0.240261241 0.117149065 0.382860593 6.954512127 0.041022257 0.041901904 7.90E-08 7.102219066 0.148420146 ELHPQLLSPT(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 ELHPQLLSPTK 11 0 E9PK89;Q8TBN0 E9PK89 RAB3IL1 Guanine nucleotide exchange factor for Rab-3A 1 ELHPQLLS(0.329)PT(0.671)K 130.27 0.00088936 56450000 4820.7 3407 8257.9 5296.2 3954.2 3775.8 3394.6 4780.9 2619.3 6114.7 TRUE FALSE 4888.204673 3778.987782 6173.091013 4956.525437 4492.828985 4445.385115 4038.707629 4374.732704 2870.895468 4868.520784 1.004043094 0.776208616 1.267960288 1.018076261 0.922832455 0.913087427 0.829555384 0.898575337 0.589685368 1 12.24926779 -7.389479606 1.449167022 0.815702351 1.011599962 0.233613004 0.147166179 0.605585285 2.557767247 0.071044658 0.057966816 4.08E-08 7.389479606 0.195897611 ELHSWEPEPDVR ddPTM_K562_Paclitaxel_30min_R1 2 ELHSWEPEPDVR 12 0 Q9BTY7 Q9BTY7 HGH1 Protein HGH1 homolog 0 ; 122.18 0.0042708 19757600 4632.7 4128.8 6667.3 4816.2 4068.1 4146.8 3168.3 4235.4 3905.6 4945.4 FALSE TRUE 4697.572093 4579.596347 4984.057655 4507.310489 4622.244094 4882.176756 3769.468385 3875.576333 4280.750331 3937.524765 1.193026679 1.163064773 1.265784459 1.144706575 1.173895878 1.239910108 0.957319283 0.984267164 1.087167849 1 11.94307328 -7.760780431 24.99999393 1.005877488 1.194937151 0.80790664 0.045271253 7.440351546 282299.4406 0.017920738 0.013041548 1.73E-08 7.760780431 0.189059663 ELHYLPFPS(ph)P ddPTM_K562_Paclitaxel_30min_R1 2 ELHYLPFPSP 10 0 Q8N565 Q8N565 MREG Melanoregulin 1 ELHYLPFPS(1)P;ELHYLPFPS(1)P 128.35 0.0011874 9607800 6220.6 5355.6 7105.7 6323.7 5499.3 5784.5 5800 7219.3 5200.8 7486.1 TRUE FALSE 6307.707592 5940.342519 5311.778153 5918.126186 6248.397764 6810.299857 6900.519722 6605.975404 5700.360078 5960.428711 1.058264078 0.996630076 0.891173842 0.992902771 1.04831348 1.142585573 1.157722046 1.108305413 0.956367462 1 12.54120039 -6.847619532 3.534305641 1.085714064 0.978057609 0.256401308 0.069021006 0.287441721 7.052511686 0.02305645 0.027086744 1.42E-07 6.847619532 -0.107656455 ELILGSETPSS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 ELILGSETPSSPR 13 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 1 ELILGSET(0.021)PS(0.082)S(0.896)PR;ELILGSETPS(0.083)S(0.916)PR 197.06 1.63E-06 77759000 6076.1 5469.3 6853.3 5832.1 5142.4 5101.5 4914 6095.5 5312.8 6041.3 TRUE FALSE 6161.184146 6066.45667 5123.099654 5458.05521 5842.881942 6006.179396 5846.405847 5577.649228 5823.118178 4810.079744 1.280890229 1.261196694 1.065075826 1.134712001 1.214716232 1.248665244 1.21544884 1.15957521 1.21060741 1 12.2318451 -12.5639963 0.947250999 0.328376148 1.196288784 0.487531694 0.061144067 5028.636836 336.2739107 7073.856817 0.020680478 2.73E-13 12.5639963 0.867912636 ELKTDS(ph)SPNQAR ddPTM_K562_Paclitaxel_30min_R1 1 ELKTDSSPNQAR 12 1 A6NLN1;P26599;P26599-2;P26599-3;K7ES59;A0A087WU68 A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 1 ELKT(0.172)DS(0.414)S(0.414)PNQAR 183.28 0.0015365 82004000 3872.2 3124.6 6499 4005.7 3344.3 2854.5 2677.1 4365.3 4235.3 5183 TRUE FALSE 3926.422747 3465.754395 4858.247071 3748.792331 3799.850279 3360.705496 3185.06575 3994.440518 4642.119489 4126.701755 0.951467535 0.839836412 1.177271186 0.908423374 0.920795954 0.814380514 0.77181874 0.967949892 1.124898227 1 12.01077346 -8.542144469 11.00911794 1.057334385 0.912593006 0.237614594 0.106892225 0.750570553 413.7719089 0.074650938 0.028564479 2.87E-09 8.542144469 -0.144741379 ELKTDSS(ph)PNQAR ddPTM_K562_Paclitaxel_30min_R1 2 ELKTDSSPNQAR 12 1 A6NLN1;P26599;P26599-2;P26599-3;K7ES59;A0A087WU68 A6NLN1 PTBP1 Polypyrimidine tract-binding protein 1 1 ELKT(0.026)DS(0.182)S(0.792)PNQAR;ELKT(0.017)DS(0.075)S(0.908)PNQAR 201.06 5.97E-06 154723000 6582.3 6166.4 11951.9 7308.1 5727.3 5610 4691.4 6980 6385.4 8220.7 TRUE FALSE 6674.472508 6839.668405 8934.495026 6839.391176 6507.455224 6604.854732 5581.568659 6387.005432 6998.746201 6545.316828 1.019732533 1.044971326 1.365021016 1.044928971 0.994215467 1.00909626 0.852757598 0.975813028 1.06927539 1 12.67624731 -6.514501017 23.34170322 0.980921965 1.14534132 0.338517516 0.099851833 186.3414677 519177.9398 0.029985655 0.040773179 3.06E-07 6.514501017 0.164419355 ELLHSVHPES(ph)PNLK ddPTM_K562_Paclitaxel_30min_R1 1 ELLHSVHPESPNLK 14 0 Q9Y217 Q9Y217 MTMR6 Myotubularin-related protein 6 1 ELLHSVHPES(1)PNLK 127.05 0.00021618 21082000 2985.8 2466.6 4657.2 3209.4 2596.4 2529.9 2436.1 3718.2 2856.6 5179.4 TRUE FALSE 3027.610412 2735.91173 3481.43226 3003.563449 2950.073637 2978.542243 2898.337258 3402.315702 3130.989194 4123.835437 0.734173431 0.663438629 0.844221918 0.728342218 0.715371329 0.722274758 0.702825635 0.825036729 0.759242031 1 12.00977105 -9.771692157 0.720710137 1.006160163 0.732226724 0.712252225 0.049658739 1.613966876 1.099659351 0.074446079 0.01796332 1.69E-10 9.771692157 -0.273933439 ELLLGPSIACT(ph)VAELTSQNNR ddPTM_K562_Paclitaxel_30min_R1 1 ELLLGPSIACTVAELTSQNNR 21 0 Q96JB2;Q96JB2-2 Q96JB2 COG3 Conserved oligomeric Golgi complex subunit 3 1 ELLLGPSIACT(0.351)VAELT(0.325)S(0.325)QNNR 57.945 0.030366 90595000 0 0 0 0 54.302 0 0 0 0 0 TRUE FALSE 0 0 0 0 61.69885174 0 0 0 0 0 0 ELLLGPSIACTVAELT(ph)SQNNR ddPTM_K562_Paclitaxel_30min_R1 1 ELLLGPSIACTVAELTSQNNR 21 0 Q96JB2;Q96JB2-2 Q96JB2 COG3 Conserved oligomeric Golgi complex subunit 3 1 ELLLGPSIACT(0.002)VAELT(0.499)S(0.499)QNNR 60.517 0.024872 94969000 0 118.95 0 0 0 0 0 0 0 0 TRUE FALSE 0 131.9373633 0 0 0 0 0 0 0 0 0 ELLSPLS(ph)EPDDRYPLIVK ddPTM_K562_Paclitaxel_30min_R1 1 ELLSPLSEPDDRYPLIVK 18 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 ELLS(0.002)PLS(0.997)EPDDRYPLIVK 89.011 0.0020105 11626000 1870 2030.2 3347.1 2210.3 1885.8 1793.7 2340.6 3434.3 1367.9 4080.9 TRUE FALSE 1896.185769 2251.864102 2502.083209 2068.541251 2142.677887 2111.78751 2784.716631 3142.534779 1499.292907 3249.21034 0.58358357 0.693049654 0.770058859 0.636628914 0.659445731 0.649938689 0.857044125 0.967168773 0.46143301 1 11.66587343 -7.757108796 24.9700858 0.81867555 0.669877232 0.222347695 0.142707715 174.0247565 1003431.132 0.053622161 0.040055619 1.75E-08 7.757108796 -0.148798318 ELLTTMGDRFT(ph)DEEVDELYR ddPTM_K562_Paclitaxel_30min_R1 1 ELLTTMGDRFTDEEVDELYR 20 1 J3QRS3;P19105;O14950 J3QRS3 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B 1 ELLT(0.003)T(0.009)MGDRFT(0.989)DEEVDELYR 79.416 0.025847 21590000 440.5 545.67 605.8 466.03 412.54 395.32 475.02 664.91 425.03 641.16 TRUE FALSE 446.6683591 605.2480959 452.8582976 436.1409217 468.7349324 465.4244514 565.1525652 608.4217453 465.8560306 510.4912401 0.87497752 1.185618966 0.887102975 0.854355349 0.918203674 0.911718782 1.107075932 1.191835819 0.912564201 1 8.995742395 -7.759464677 24.99713901 1.068855314 0.942782391 0.198563132 0.110366982 81.98091903 1037789.713 0.044397163 0.032619853 1.74E-08 7.759464677 -0.126072923 ELLTTMGDRFTDEEVDELYR ddPTM_K562_Paclitaxel_30min_R1 1 ELLTTMGDRFTDEEVDELYR 20 1 J3QRS3;P19105;O14950 J3QRS3 MYL12A;MYL12B Myosin regulatory light chain 12A;Myosin regulatory light chain 12B 0 111.58 0.001415 17525000 1167.4 929 1094.1 1103.3 1096.6 743.04 880.1 1118.2 1060.2 1471.1 FALSE TRUE 1183.747202 1030.431362 817.8809233 1032.539276 1245.975486 874.8077112 1047.094381 1023.20193 1162.036947 1171.289012 1.010636307 0.879741337 0.698274221 0.88154099 1.063764342 0.74687605 0.89396756 0.873569136 0.992100954 1 10.19388139 -8.769216581 8.204192826 0.996884931 0.876911818 0.170943298 0.100983934 0.237858314 117.4124341 0.085753742 0.025867836 1.70E-09 8.769216581 -0.119973113 ELNSNHDGADET(ph)SEKEQQEAIEHIDEVQNEIDR ddPTM_K562_Paclitaxel_30min_R1 1 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDR 33 1 Q01105-2 Q01105-2 SET Protein SET 1 ELNS(0.008)NHDGADET(0.496)S(0.496)EKEQQEAIEHIDEVQNEIDR 73.492 1.26E-05 36981000 827.65 931.34 1687.8 900 790.38 910.42 750.55 1127.1 550.74 1458 TRUE FALSE 839.2396535 1033.026851 1261.694016 842.2780283 898.0431372 1071.870204 892.9629444 1031.34582 603.6410378 1160.8588 0.72294723 0.88988157 1.086862602 0.725564581 0.773602386 0.923342446 0.769226149 0.888433477 0.519995229 1 10.18097679 ELNSNHDGADET(ph)SEKEQQEAIEHIDEVQNEIDRLNEQASEEILK ddPTM_K562_Paclitaxel_30min_R1 2 ELNSNHDGADETSEKEQQEAIEHIDEVQNEIDRLNEQASEEILK 44 2 Q01105-2 Q01105-2 SET Protein SET 1 ELNS(0.016)NHDGADET(0.487)S(0.487)EKEQQEAIEHIDEVQNEIDRLNEQAS(0.01)EEILK;ELNS(0.05)NHDGADET(0.474)S(0.474)EKEQQEAIEHIDEVQNEIDRLNEQAS(0.003)EEILK 42.884 0.0014485 111005000 1094.34 1036.17 2958.72 1352 1039.09 870.61 1030.55 1454.47 1012.6 2015.16 TRUE FALSE 1109.664136 1149.302545 2211.754543 1265.288771 1180.63165 1025.00046 1226.091483 1330.903695 1109.864754 1604.469286 0.691608213 0.71631321 1.378496031 0.788602675 0.735839358 0.638840811 0.764172611 0.82949777 0.69173325 1 10.64788046 -5.556451373 24.99983684 0.844443521 0.697779173 0.081846932 0.199153394 458.0735254 341102.5728 0.053270111 0.140941015 2.78E-06 5.556451373 -0.146664348 ELPESGIQLGT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 ELPESGIQLGTPR 13 0 A0A087WW69;A0A087WTA5;E7ERK9;Q9UI10-3;Q9UI10;Q9UI10-2;F8W8L6 A0A087WW69 EIF2B4 Translation initiation factor eIF-2B subunit delta 1 ELPESGIQLGT(1)PR;ELPESGIQLGT(1)PR 155.37 0.0015969 111070000 2337.6 2240.5 2555.8 1865.59 1456.6 1819.38 2129.47 2491.3 1843.63 2532.2 TRUE FALSE 2370.333612 2485.125367 1910.55668 1745.939407 1655.01358 2142.021498 2533.525816 2279.648515 2020.718899 2016.13625 1.175681263 1.232617769 0.947632721 0.865982846 0.820883797 1.062438859 1.256624306 1.130701615 1.002272986 1 10.97737742 -5.754385759 24.99911784 1.014151526 1.204149588 0.29839991 0.11849137 236.5293117 838275.0986 0.035460952 0.089623091 1.76E-06 5.754385759 0.189998062 ELPLTQPPSAHSSITSGSCPGT(ph)PEMR ddPTM_K562_Paclitaxel_30min_R1 1 ELPLTQPPSAHSSITSGSCPGTPEMR 26 0 Q9HCD6;Q9HCD6-2;J3KRP9;Q9HCD6-3;Q9HCD6-4 Q9HCD6 TANC2 Protein TANC2 1 ELPLTQPPSAHSSIT(0.003)S(0.013)GS(0.023)CPGT(0.961)PEMR 69.162 0.0012177 17006000 693.98 782.24 944.99 826.18 948.95 695.5 776.89 803.39 703.8 814.85 TRUE FALSE 703.6978611 867.6476086 706.415587 773.1925126 1078.213056 818.8371597 924.3008219 735.1370049 771.4031347 648.7831227 1.084642674 1.337346146 1.088831633 1.191758055 1.661900592 1.262112301 1.424668413 1.133101308 1.189000003 1 9.34159248 -8.912909066 1.501193944 1.011531409 1.292311454 0.216301545 0.163939529 0.598268632 2.992237025 0.159162052 0.047548839 1.22E-09 8.912909066 0.280780045 ELPPAAAIGATSLVAAPHSS(ph)SSSPSKDSSR ddPTM_K562_Paclitaxel_30min_R1 1 ELPPAAAIGATSLVAAPHSSSSSPSKDSSR 30 1 Q14C86-4;Q14C86-2;Q14C86-6;F8W9S7;Q14C86-3;Q14C86-5;Q14C86;H0Y4E7;H0Y7I9;C9IZ08 Q14C86-4 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 ELPPAAAIGATSLVAAPHS(0.087)S(0.214)S(0.214)S(0.214)S(0.214)PS(0.033)KDS(0.013)S(0.011)R 69.71 0.00017177 33164000 1393.8 1155.3 2338 1705.3 1083.2 995.76 1079.1 1894.4 909.48 1951.1 TRUE FALSE 1413.3175 1281.439561 1747.742984 1595.929691 1230.750179 1172.344055 1283.853592 1733.458896 996.8396177 1553.464749 0.909784082 0.824891303 1.125061245 1.027335633 0.792261414 0.754664086 0.826445269 1.115866257 0.641687955 1 10.60127379 ELPPAAAIGATSLVAAPHSSS(ph)SSPSKDSSR ddPTM_K562_Paclitaxel_30min_R1 1 ELPPAAAIGATSLVAAPHSSSSSPSKDSSR 30 1 Q14C86-4;Q14C86-2;Q14C86-6;F8W9S7;Q14C86-3;Q14C86-5;Q14C86;H0Y4E7;H0Y7I9;C9IZ08 Q14C86-4 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 ELPPAAAIGATSLVAAPHS(0.06)S(0.086)S(0.265)S(0.265)S(0.265)PS(0.015)KDS(0.016)S(0.029)R 178.2 9.78E-39 23338000 1070.8 1095.7 2172.3 1268.5 979.05 931.93 887.31 1231.8 542.27 1553.1 TRUE FALSE 1085.794504 1215.332231 1623.875998 1187.144088 1112.413185 1097.194701 1055.67244 1127.150901 594.3574564 1236.577367 0.878064351 0.982819404 1.313202102 0.960024111 0.899590446 0.887283505 0.853705129 0.911508597 0.480647206 1 10.27213679 -7.093986416 1.305317 0.803712894 1.051452072 0.267512044 0.164000616 0.58343119 2.043311633 0.074186901 0.077284093 8.05E-08 7.093986416 0.247739178 ELPPLS(ph)PSLSR ddPTM_K562_Paclitaxel_30min_R1 4 ELPPLSPSLSR 11 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 ELPPLS(0.477)PS(0.477)LS(0.047)R;ELPPLS(0.735)PS(0.261)LS(0.005)R;ELPPLS(0.99)PS(0.01)LSR;ELPPLS(0.732)PS(0.268)LSR 168.83 0.00025591 536112000 9345.4 8907.9 10804.9 9609.2 8975.2 8341.1 8880.4 9861.6 8104.3 11332.1 TRUE FALSE 9476.264433 9880.494647 8077.069362 8992.908921 10197.77419 9820.27697 10565.40954 9023.795526 8882.754226 9022.6118 1.050279525 1.095081432 0.895203023 0.996707951 1.130246365 1.088407347 1.170992366 1.000131196 0.984499214 1 13.1393294 -6.721512485 24.99945637 1.069118126 1.007292814 0.108016203 0.073085459 339.2748053 212429.0436 0.022843739 0.029490766 1.90E-07 6.721512485 -0.061825312 ELPPLS(ph)PSLSRR ddPTM_K562_Paclitaxel_30min_R1 1 ELPPLSPSLSRR 12 1 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 ELPPLS(0.999)PS(0.001)LSRR 112.96 0.0029782 70340000 3010.1 2922.1 3068.3 3025.8 2388.7 2372.7 2418.2 2888.9 3305.5 3043.9 TRUE FALSE 3052.250687 3241.14476 2293.669717 2831.738731 2714.081381 2793.465031 2877.040826 2643.469913 3623.008044 2423.551509 1.259412344 1.337353362 0.946408487 1.168425231 1.119877738 1.152632828 1.187117672 1.090742203 1.494916873 1 11.24290703 ELQGDGPPS(ph)SPTNDPTVKYETQPR ddPTM_K562_Paclitaxel_30min_R1 1 ELQGDGPPSSPTNDPTVKYETQPR 24 1 A0A5F9ZHX5;Q12873-2;Q12873;Q12873-3 A0A5F9ZHX5;Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 ELQGDGPPS(0.45)S(0.275)PT(0.275)NDPTVKYETQPR 119.16 2.68E-08 17090000 1292.9 810.78 2046.8 1353.7 995.12 1025.4 983.44 1248.8 1143.3 1341.9 TRUE FALSE 1311.004589 899.3037023 1530.060025 1266.879741 1130.672192 1207.240293 1170.042606 1142.706645 1253.119073 1068.420043 1.227049789 0.84171362 1.432077239 1.185750631 1.058265612 1.129930405 1.095114804 1.069529397 1.172871177 1 10.06126323 -6.753507573 24.75570478 1.093585439 1.166683198 0.077412396 0.140798035 530.6888587 1656306.814 0.041580838 0.052671181 1.76E-07 6.753507573 0.073097759 ELQGDGPPSS(ph)PTNDPTVKYETQPR ddPTM_K562_Paclitaxel_30min_R1 1 ELQGDGPPSSPTNDPTVKYETQPR 24 1 A0A5F9ZHX5;Q12873-2;Q12873;Q12873-3 A0A5F9ZHX5;Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 ELQGDGPPS(0.344)S(0.656)PTNDPTVKYETQPR 144.3 7.92E-20 17280000 2203 1824.4 3427.9 2164.2 1395.1 1739.5 1467.4 2195.4 2177.8 2771.1 TRUE FALSE 2233.848797 2023.594162 2562.484249 2025.397899 1585.136239 2047.975901 1745.83149 2008.887067 2386.987421 2206.348299 1.01246426 0.917168954 1.161414202 0.917986475 0.718443339 0.928219675 0.791276468 0.910503146 1.081872441 1 11.10744484 -6.500257182 24.59792442 0.888971561 1.022476012 0.201292664 0.109845312 935.0315248 1016721.698 0.03107242 0.045669535 3.16E-07 6.500257182 0.13350445 ELRAPS(ph)PPVEHPR ddPTM_K562_Paclitaxel_30min_R1 1 ELRAPSPPVEHPR 13 1 Q86WR7;Q86WR7-2 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 ELRAPS(1)PPVEHPR 79.317 0.023912 164530000 1872.2 1774.7 2084.3 1956 1912.3 2010 1552.6 2017.4 2396.6 1988.4 TRUE FALSE 1898.416576 1968.467748 1558.092687 1830.550915 2172.787636 2366.445278 1847.197745 1846.009278 2626.804138 1583.162989 1.199128953 1.243376558 0.984164421 1.156261818 1.372434583 1.494757833 1.166776736 1.166026045 1.659212701 1 10.62859407 -6.715852793 8.215917003 1.320172002 1.140404019 0.159623856 0.183477341 0.457380145 73.10766548 0.05331669 0.068507963 1.92E-07 6.715852793 -0.179767983 ELS(ph)PAALEK ddPTM_K562_Paclitaxel_30min_R1 4 ELSPAALEK 9 0 O75683 O75683 SURF6 Surfeit locus protein 6 1 ELS(1)PAALEK;ELS(1)PAALEK;ELS(1)PAALEK;ELS(1)PAALEK 126.03 0.0014895 608930000 18633 14961.5 30893.8 19881.4 15127.5 12111.9 12768.3 18029.4 15141.9 21908.8 TRUE FALSE 18893.91949 16595.04717 23094.2781 18606.29599 17188.12161 14259.77541 15191.01827 16497.68993 16596.34715 17443.77453 1.083132521 0.95134497 1.323926657 1.066643917 0.985344174 0.817470747 0.870856146 0.945763768 0.951419495 1 14.09042463 -6.83401615 3.21897022 0.910695642 1.113572531 0.456345563 0.097304566 0.221595497 4.620492268 0.032033127 0.038110531 1.47E-07 6.83401615 0.202876889 ELS(ph)PAGSISK ddPTM_K562_Paclitaxel_30min_R1 2 ELSPAGSISK 10 0 A0A494C0Q6;A0A494C0K5;A0A494C0W0;O95453-4;O95453-2;O95453-3;O95453 A0A494C0Q6 PARN Poly(A)-specific ribonuclease PARN 1 ELS(1)PAGSISK;ELS(1)PAGSISK 171.49 9.87E-05 573950000 11350.4 9499.6 22176.8 13310.6 9892.1 9131.1 8716.7 13088.2 10840.5 15371.2 TRUE FALSE 11509.34062 10536.79845 16577.99256 12456.91769 11239.57149 10750.37238 10370.64832 11976.27572 11881.77846 12238.541 0.940417703 0.860952172 1.354572621 1.01784336 0.918375115 0.878403102 0.847376196 0.978570543 0.970849259 1 13.57914396 -6.678714204 5.197429788 0.924401959 1.055819349 0.15640689 0.126457385 0.374542013 17.26448479 0.039544893 0.051003086 2.10E-07 6.678714204 0.13141739 ELS(ph)PLFLR ddPTM_K562_Paclitaxel_30min_R1 1 ELSPLFLR 8 0 O75691 O75691 UTP20 Small subunit processome component 20 homolog 1 ELS(1)PLFLR 95.775 0.0085263 0 1257.8 890.52 1378.6 1379.8 998.18 972.4 1068.8 1015.6 741.91 1172.5 TRUE FALSE 1275.413081 987.7499851 1030.55538 1291.305804 1134.149015 1144.841487 1271.59922 929.3184408 813.1737704 933.5438564 1.366205853 1.058064898 1.103917478 1.383229931 1.214885629 1.226339265 1.362120496 0.99547379 0.871061134 1 9.866573989 -8.403031102 5.523491274 0.935156395 1.235058332 0.610240775 0.106365875 0.155997136 6.356815475 0.061389542 0.028469803 3.95E-09 8.403031102 0.299901938 ELSDIAHR ddPTM_K562_Paclitaxel_30min_R1 4 ELSDIAHR 8 0 H3BQN4;J3KPS3;P04075;P04075-2;H3BMQ8;H3BUH7;H3BR04;H3BPS8 H3BQN4 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A 0 ;;; 147.19 3.20E-05 243852000 37169.5 37913.2 48703.2 42962 38909.8 36426.1 38032.7 41082.9 39648 44384.8 FALSE TRUE 37689.98768 42052.69139 36407.47481 40206.60961 44209.97351 42885.75739 45249.20628 37592.65121 43456.36755 35339.1534 1.066522088 1.1899745 1.030230532 1.137735507 1.251019599 1.213547956 1.280427003 1.063767736 1.229694641 1 15.10897986 -6.527413916 24.72006803 1.1846304 1.101510154 0.123663489 0.089038522 202.5772609 1104187.805 0.025071705 0.032496396 2.97E-07 6.527413916 -0.083120246 ELSDQATAS(ph)PIVAR ddPTM_K562_Paclitaxel_30min_R1 2 ELSDQATASPIVAR 14 0 Q5JSH3-4;Q5JSH3-2;Q5JSH3 Q5JSH3-4 WDR44 WD repeat-containing protein 44 1 ELSDQAT(0.015)AS(0.985)PIVAR;ELSDQAT(0.004)AS(0.996)PIVAR 170.47 1.29E-05 97206000 3123.3 3419 3434.9 3416.3 2673.7 2363.7 2891.8 3615.4 2255.5 3844.6 TRUE FALSE 3167.035836 3792.297982 2567.717013 3197.193809 3037.903206 2782.869007 3440.503954 3308.249203 2472.150853 3061.06841 1.034617791 1.238880507 0.838830326 1.044469898 0.992432314 0.909116895 1.123955264 1.080749843 0.807610456 1 11.57981957 -5.75148847 24.99999603 0.983650678 1.136749095 0.270676935 0.105611133 273.4347814 686945.8706 0.026105553 0.067321227 1.77E-06 5.75148847 0.153098417 ELSESVQQQSTPVPLIS(ph)PKR ddPTM_K562_Paclitaxel_30min_R1 4 ELSESVQQQSTPVPLISPKR 20 1 Q9ULU4-19;Q9ULU4-16;H7C4X9;A0A087WVZ6;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-14;Q9ULU4-12;Q9ULU4-4;Q9ULU4-18;Q9ULU4-21;Q9ULU4-23;Q9ULU4-15;Q9ULU4-6;Q9ULU4-3;A0A087WYS3;Q9ULU4-8;Q9ULU4-17;Q9ULU4-2;A0A087WV57 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 ELSESVQQQSTPVPLIS(1)PKR;ELSESVQQQSTPVPLIS(1)PKR;ELSESVQQQSTPVPLIS(1)PKR;ELSESVQQQSTPVPLIS(1)PKR 178.17 3.53E-15 105336000 6326.5 6261.7 13058.1 7727.8 6192.3 5498.6 4893.58 7693.2 6163.1 9361.3 TRUE FALSE 6415.090519 6945.373582 9761.421154 7232.173496 7035.796097 6473.699506 5822.111259 7039.614641 6755.093292 7453.461921 0.860686026 0.9318319 1.309649295 0.970310652 0.943963513 0.86854935 0.781128464 0.944475831 0.906302784 1 12.86369496 -6.763372858 3.124692501 0.892537255 1.037001856 0.171873995 0.12129738 0.402323295 8.125868453 0.040348746 0.050162473 1.72E-07 6.763372858 0.144464602 ELSNS(ph)PLRENS(ph)FGSPLEFR ddPTM_K562_Paclitaxel_30min_R1 1 ELSNSPLRENSFGSPLEFR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 ELS(0.047)NS(0.923)PLRENS(0.874)FGS(0.156)PLEFR 71.696 0.016232 19810000 1852.2 1594.9 1930.2 1638.7 1378.5 1555.3 1740 1761.5 1319.4 2174.3 TRUE FALSE 1878.136515 1769.036576 1442.897138 1533.601117 1566.275038 1831.110618 2070.155917 1611.84958 1446.134265 1731.176467 1.084890276 1.021869584 0.833477791 0.885872207 0.904746032 1.057726149 1.195808721 0.931071795 0.835347692 1 10.75753708 -7.25646827 24.89450065 1.011671474 0.940765959 0.063416152 0.108130152 1153.785805 5777971.173 0.039716919 0.038535071 5.54E-08 7.25646827 -0.070905515 ELSNS(ph)PLRENSFGS(ph)PLEFR ddPTM_K562_Paclitaxel_30min_R1 1 ELSNSPLRENSFGSPLEFR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 ELS(0.026)NS(0.973)PLRENS(0.019)FGS(0.982)PLEFR 83.221 0.0051954 234850000 4124 3818.2 4466.4 4227.9 3327.3 3259.6 3927 5054.2 3602.9 5463.2 TRUE FALSE 4181.748724 4235.083988 3338.80208 3956.741417 3780.534592 3837.644293 4672.12775 4624.814163 3948.974643 4349.796841 0.961366445 0.973627998 0.767576556 0.909638211 0.869129003 0.882258283 1.07410252 1.063225326 0.907852662 1 12.08673231 -7.747221329 24.91800525 1.016563903 0.891398214 0.419798591 0.06744015 214.9810905 376767.8103 0.026460265 0.020396329 1.79E-08 7.747221329 -0.125165689 ELSNS(ph)PLRENSFGSPLEFR ddPTM_K562_Paclitaxel_30min_R1 3 ELSNSPLRENSFGSPLEFR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 ELS(0.036)NS(0.954)PLRENS(0.007)FGS(0.003)PLEFR;ELS(0.063)NS(0.917)PLRENS(0.008)FGS(0.012)PLEFR;ELS(0.009)NS(0.991)PLRENSFGSPLEFR 105.53 0.00046765 1368950000 2984.84 3060.44 3730.24 3320.67 3136.67 2695.57 3334.51 3769.2 2785.81 4525.2 TRUE FALSE 3026.636969 3394.589189 2788.494777 3107.697089 3563.937558 3173.591492 3967.215865 3448.982933 3053.399498 3602.961756 0.840041381 0.942166312 0.77394515 0.862539571 0.989168856 0.880828526 1.101098522 0.957263265 0.847469306 1 11.81496762 -6.73997276 12.93249847 0.963331808 0.855127263 0.334270292 0.074638015 1.307545518 783.9675866 0.022135028 0.028301393 1.82E-07 6.73997276 -0.108204545 ELSPLISLPSPVPPLS(ph)PIHSNQQTLPR ddPTM_K562_Paclitaxel_30min_R1 2 ELSPLISLPSPVPPLSPIHSNQQTLPR 27 0 F5GXF9;P51825-3;P51825-2;A0A669KBI3;P51825;E7ETI4;E7EMC5 F5GXF9 AFF1 AF4/FMR2 family member 1 1 ELSPLISLPSPVPPLS(0.695)PIHS(0.227)NQQT(0.078)LPR;ELSPLISLPSPVPPLS(0.992)PIHS(0.003)NQQT(0.005)LPR 153.11 4.13E-32 33096000 2196.26 2266.68 2775.44 2085.97 2032.06 2263.91 2239.45 2686.82 1591.97 2927.19 TRUE FALSE 2227.014416 2514.163788 2074.745846 1952.185221 2308.860975 2665.382652 2664.373947 2458.55787 1744.885832 2330.627071 0.955543014 1.078749929 0.890209279 0.837622305 0.990660841 1.143633267 1.143200463 1.05489115 0.748676549 1 11.18650246 -4.949227554 16.56999606 0.992865964 0.69658363 0.004371397 0.122832258 1889741.425 14782914.06 0.032522275 18223914.1 1.12E-05 4.949227554 -0.296282334 ELSSEPQT(ph)PPAQK ddPTM_K562_Paclitaxel_30min_R1 4 ELSSEPQTPPAQK 13 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 ELSS(0.002)EPQT(0.998)PPAQK;ELS(0.001)S(0.014)EPQT(0.985)PPAQK;ELSS(0.001)EPQT(0.999)PPAQK;ELSS(0.077)EPQT(0.923)PPAQK 137.62 0.00017092 124618000 17334.2 14861.6 29467.7 17545.2 13211.8 13184.4 11124.7 17106.9 9877.9 19837.2 TRUE FALSE 17576.93228 16484.23975 22028.21468 16419.9294 15011.47084 15522.46822 13235.55375 15653.56207 10826.71643 15794.36775 1.112860771 1.043678355 1.394687969 1.039606628 0.950431893 0.982785032 0.837991996 0.99108507 0.685479571 1 13.94712257 -6.628514192 3.202967848 0.905720174 1.175292489 0.502995464 0.122075744 0.20426933 4.163977245 0.036963663 0.049531117 2.35E-07 6.628514192 0.269572315 ELSTS(ph)PCNPIVR ddPTM_K562_Paclitaxel_30min_R1 2 ELSTSPCNPIVR 12 0 H3BSS6;Q9H2Y7;H3BNX5 H3BSS6 ZNF106 Zinc finger protein 106 1 ELS(0.001)T(0.306)S(0.694)PCNPIVR;ELS(0.004)T(0.203)S(0.792)PCNPIVR 185.57 0.00026335 593450000 3934.2 4176.9 4801.9 4647.7 3904.8 3883.4 3644.7 4183 4009.8 4814.6 TRUE FALSE 3989.290938 4632.948067 3589.600956 4349.617324 4436.699869 4572.066464 4336.262798 3827.628041 4394.959206 3833.381877 1.040671414 1.208579843 0.936405782 1.134668411 1.157385309 1.192697887 1.131184666 0.998499018 1.146496578 1 11.90440201 -11.46453713 4.518986504 0.999597305 1.10585846 0.127077728 0.082680277 0.000331778 3.93E-05 0.079179815 0.019131482 3.43E-12 11.46453713 0.106261155 ELSVQDQPSLS(ph)PTSLQNSSSHTTTAK ddPTM_K562_Paclitaxel_30min_R1 1 ELSVQDQPSLSPTSLQNSSSHTTTAK 26 0 O95628-3;O95628-2;O95628;O95628-8;O95628-4;O95628-7;O95628-9;O95628-10;O95628-6 O95628-3 CNOT4 CCR4-NOT transcription complex subunit 4 1 ELSVQDQPS(0.164)LS(0.412)PT(0.388)S(0.034)LQNSSSHTTTAK 82.639 6.04E-05 26277000 1788.3 1563.8 2991.9 2150.7 1634.8 1274.3 1319.8 2438.8 1453.6 2579.8 TRUE FALSE 1813.341717 1734.540972 2236.557842 2012.763728 1857.487437 1500.279213 1570.22516 2231.608717 1593.224775 2054.035344 0.882819141 0.844455271 1.088860446 0.979907057 0.904311332 0.730405744 0.764458686 1.086450982 0.775655969 1 11.00424529 ELSVQDQPSLSPT(ph)SLQNSSSHTTTAK ddPTM_K562_Paclitaxel_30min_R1 1 ELSVQDQPSLSPTSLQNSSSHTTTAK 26 0 O95628-3;O95628-2;O95628;O95628-8;O95628-4;O95628-7;O95628-9;O95628-10;O95628-6 O95628-3 CNOT4 CCR4-NOT transcription complex subunit 4 1 ELSVQDQPS(0.003)LS(0.057)PT(0.878)S(0.062)LQNSSSHTTTAK 134.68 1.88E-14 17632000 1847.1 2034.8 3504.5 2127.8 2070.2 1459.4 1868.5 2238.3 1531.8 2880.4 TRUE FALSE 1872.965099 2256.966345 2619.745632 1991.332432 2352.196289 1718.204099 2223.038121 2048.142444 1678.936234 2293.372899 0.816685808 0.984125323 1.142311236 0.86829858 1.025649291 0.749203978 0.969331294 0.89306996 0.732081658 1 11.16325524 -7.235430366 24.96621749 0.868341336 0.972552545 0.159223923 0.113066106 1374.134203 1319041.483 0.036618877 0.036607994 5.82E-08 7.235430366 0.10421121 ELSVQDQPSLSPTS(ph)LQNSSSHTTTAK ddPTM_K562_Paclitaxel_30min_R1 1 ELSVQDQPSLSPTSLQNSSSHTTTAK 26 0 O95628-3;O95628-2;O95628;O95628-8;O95628-4;O95628-7;O95628-9;O95628-10;O95628-6 O95628-3 CNOT4 CCR4-NOT transcription complex subunit 4 1 ELSVQDQPS(0.032)LS(0.207)PT(0.301)S(0.442)LQNS(0.008)S(0.008)S(0.002)HTTTAK 113.31 9.65E-08 20508000 2060.7 1939.1 3862.1 2427.7 2039.2 1685.4 2076.8 2817.5 1880.4 3985.9 TRUE FALSE 2089.556158 2150.817496 2887.065089 2271.998188 2316.973564 1984.282026 2470.861958 2578.135789 2061.020822 3173.571392 0.658424185 0.67772778 0.909721173 0.715912109 0.730083958 0.625252052 0.778574563 0.812376805 0.649432632 1 11.63189158 -12.08850385 2.487031746 1.443278337 0.733004829 0.496224917 0.081925985 28289644.68 8776396.471 71019297.36 0.021204573 8.16E-13 12.08850385 -0.710273507 ELTPAS(ph)PTCTNSVSK ddPTM_K562_Paclitaxel_30min_R1 1 ELTPASPTCTNSVSK 15 0 A0A494C0S2;A0A090HNM7;A0A1W2PS85;R4GMW8;P28715 A0A494C0S2 ERCC5-201;BIVM-ERCC5;ERCC5 DNA repair protein complementing XP-G cells 1 ELT(0.005)PAS(0.952)PT(0.031)CT(0.011)NS(0.001)VSK 193.77 1.43E-07 31957000 3401.5 2579.8 4732.8 3359.7 2491 2042.8 2424.5 3379.8 2143 3963.1 TRUE FALSE 3449.131495 2861.471288 3537.946105 3144.223879 2830.316373 2405.061898 2884.536218 3092.664894 2348.844725 3155.418045 1.093082262 0.906843799 1.121228964 0.996452399 0.896970333 0.762200718 0.914153427 0.980112572 0.74438464 1 11.62361544 -6.731040277 3.965002473 0.876203019 1.030870295 0.379711877 0.092569432 0.229181281 7.770066384 0.027710918 0.03485392 1.86E-07 6.731040277 0.154667275 ELTPASPTCTNS(ph)VSK ddPTM_K562_Paclitaxel_30min_R1 1 ELTPASPTCTNSVSK 15 0 A0A494C0S2;A0A090HNM7;A0A1W2PS85;R4GMW8;P28715 A0A494C0S2 ERCC5-201;BIVM-ERCC5;ERCC5 DNA repair protein complementing XP-G cells 1 ELTPAS(0.116)PT(0.116)CT(0.306)NS(0.457)VS(0.003)K 127.07 0.00016429 25336000 3362.5 2930.1 6239.1 3689.6 3136.3 2653.6 2943.2 4218.1 2812.9 4431.5 TRUE FALSE 3409.585374 3250.018227 4663.962041 3452.96557 3563.517158 3124.178702 3501.656835 3859.746076 3083.091613 3528.357867 0.966337742 0.921113546 1.321850622 0.978632469 1.009964774 0.885448364 0.992432448 1.093921371 0.873803545 1 11.78478118 -6.43623884 22.30890945 0.978428525 1.070790477 0.122657408 0.114425419 65.54223809 16872.57229 0.032527546 0.048246108 3.66E-07 6.43623884 0.092361952 ELVGPPLAETVFTPKT(ph)SPENVQDR ddPTM_K562_Paclitaxel_30min_R1 1 ELVGPPLAETVFTPKTSPENVQDR 24 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 ELVGPPLAET(0.011)VFT(0.279)PKT(0.355)S(0.355)PENVQDR 72.566 0.0038876 14417000 884.13 662.36 1771.6 1091.4 775.51 600.15 717.33 940.02 618.88 1091.9 TRUE FALSE 896.5105478 734.6787048 1324.337669 1021.402489 881.1475915 706.578176 853.4396228 860.1594336 678.3261892 869.3701806 1.031218424 0.845070053 1.523329991 1.174876378 1.013547061 0.812747195 0.981675748 0.989405265 0.780250122 1 9.763826802 -6.948305232 4.418193014 0.915628478 1.147443995 0.286606779 0.171254061 0.290728733 12.05372767 0.057286243 0.064415203 1.13E-07 6.948305232 0.231815517 ELVSDLSS(ph)QFVIS(ph)PPALR ddPTM_K562_Paclitaxel_30min_R1 1 ELVSDLSSQFVISPPALR 18 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 2 ELVS(0.017)DLS(0.494)S(0.544)QFVIS(0.945)PPALR 42.338 0.029228 7202100 304.87 410.67 573.62 491.24 551.53 497.01 350.35 643.19 418.05 476.05 TRUE FALSE 309.1391206 455.5083394 428.8025366 459.7340651 626.6577235 585.1477451 416.8270836 588.5469948 458.2055704 379.0307487 0.815604332 1.201771468 1.131313325 1.212920236 1.653316322 1.543800199 1.099718387 1.552768468 1.208887595 1 8.566171081 -4.895230122 0.913741458 1.354095126 0.194490978 0.337118625 0.204886812 4.170314033 1.745855706 0.069067155 5.619706817 1.27E-05 4.895230122 -1.159604148 EMDMSPEEVVAS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 EMDMSPEEVVASPR 14 0 Q13049 Q13049 TRIM32 E3 ubiquitin-protein ligase TRIM32 1 EMDMS(0.001)PEEVVAS(0.999)PR;EMDMSPEEVVAS(1)PR 128.95 0.00018096 20274100 1011.29 1208.29 1781.45 1454.31 1204.54 1049.19 1119.36 1469.73 906.98 1803.3 TRUE FALSE 1025.45118 1340.215188 1331.700915 1361.037066 1368.618741 1235.249115 1331.752717 1344.867263 994.0994815 1435.78647 0.714208694 0.933436285 0.927506243 0.947938356 0.953218859 0.860329263 0.927542322 0.936676373 0.692372788 1 10.48762549 -5.256980775 24.4872195 0.90907103 0.714208589 0.350637944 0.079434523 382.2750144 2099401.123 0.018999289 0.145415229 5.53E-06 5.256980775 -0.194862441 EMDRETLIDVAR ddPTM_K562_Paclitaxel_30min_R1 1 EMDRETLIDVAR 12 1 P40227;P40227-2 P40227 CCT6A T-complex protein 1 subunit zeta 0 122.18 0.016087 60946000 2614 2389.5 3662 3107.8 2892.8 2645 2397.7 3042.1 2816.1 3489.2 FALSE TRUE 2650.604065 2650.393691 2737.482809 2908.479618 3286.848336 3114.053612 2852.651058 2783.654617 3086.598988 2778.099125 0.954107088 0.954031362 0.985379818 1.046931548 1.183128531 1.120929626 1.026835592 1.001999746 1.111047104 1 11.43988236 -6.245172046 3.154710522 1.076619558 0.958354247 0.455358992 0.053765387 0.239448541 4.903133807 0.016640212 0.029382424 5.69E-07 6.245172046 -0.11826531 EMDT(ph)ARTPLSEAEFEEIMNR ddPTM_K562_Paclitaxel_30min_R1 2 EMDTARTPLSEAEFEEIMNR 20 1 F8WJN3;Q16630-3;Q16630;Q16630-2 F8WJN3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 1 EMDT(0.5)ART(0.5)PLSEAEFEEIMNR;EMDT(0.89)ART(0.11)PLSEAEFEEIMNR 141.6 1.74E-12 205901000 4369.6 4235.2 5732.7 5110 4316.4 4142.3 4690.6 5222.8 3257.4 5560.4 TRUE FALSE 4430.787881 4697.613459 4285.408984 4782.267472 4904.366757 4876.878744 5580.616863 4779.09054 3570.287824 4427.187428 1.00081326 1.061083032 0.967975504 1.08020443 1.107783855 1.101574944 1.260533229 1.079486834 0.806446052 1 12.11217474 -8.737753583 23.38530133 0.903223269 1.0852508 0.416987395 0.084708725 93.85497742 92665.2938 0.059937269 0.022614927 1.83E-09 8.737753583 0.182027531 EMDTART(ph)PLSEAEFEEIMNR ddPTM_K562_Paclitaxel_30min_R1 1 EMDTARTPLSEAEFEEIMNR 20 1 F8WJN3;Q16630-3;Q16630;Q16630-2 F8WJN3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 1 EMDT(0.009)ART(0.991)PLSEAEFEEIMNR 118.96 0.00022657 57694000 1125.8 1242.5 1653.9 1423.3 1478.1 1080.3 1335.9 1429.6 800.03 1676 TRUE FALSE 1141.564673 1378.160352 1236.35249 1332.015908 1679.442244 1271.876037 1589.380051 1308.146557 876.8764561 1334.43028 0.855469702 1.032770593 0.926502125 0.99819071 1.258546265 0.953122884 1.191055145 0.980303412 0.657116726 1 10.38200822 -8.541338522 24.39476808 0.825275323 1.035266556 0.255303725 0.136093711 235.2120681 310826.8367 0.088514432 0.033469243 2.88E-09 8.541338522 0.209991233 EMEHNTVCAAGT(ph)SPVGEIGEEK ddPTM_K562_Paclitaxel_30min_R1 5 EMEHNTVCAAGTSPVGEIGEEK 22 0 P18583-6;P18583-2;P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;H7C1M2 P18583-6 SON Protein SON 1 EMEHNTVCAAGT(0.5)S(0.5)PVGEIGEEK;EMEHNTVCAAGT(0.852)S(0.148)PVGEIGEEK;EMEHNTVCAAGT(0.83)S(0.17)PVGEIGEEK;EMEHNTVCAAGT(0.969)S(0.031)PVGEIGEEK;EMEHNTVCAAGT(0.984)S(0.016)PVGEIGEEK 137.4 6.94E-12 627866700 14758.5 11971.1 25400.1 15693 12540.8 11401.5 10161.5 15378.8 11341.1 19521.6 TRUE FALSE 14965.16453 13278.14518 18987.53061 14686.52122 14249.06928 13423.39594 12089.59158 14072.27495 12430.46333 15543.0872 0.962818026 0.854279784 1.22160613 0.944890872 0.916746402 0.863624823 0.777811475 0.905371936 0.799742237 1 13.92398546 -6.827288776 2.6036841 0.860357667 1.005321165 0.254802492 0.10286815 0.366195074 5.065037912 0.033987787 0.041158145 1.49E-07 6.827288776 0.144963498 EMEHNTVCAAGTS(ph)PVGEIGEEK ddPTM_K562_Paclitaxel_30min_R1 2 EMEHNTVCAAGTSPVGEIGEEK 22 0 P18583-6;P18583-2;P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;H7C1M2 P18583-6 SON Protein SON 1 EMEHNTVCAAGT(0.086)S(0.914)PVGEIGEEK;EMEHNTVCAAGT(0.236)S(0.764)PVGEIGEEK 109.98 0.00097156 18716800 3428.6 2924.3 6428.3 3842.7 2885.3 2548.6 2655.7 3701 2909.9 5172 TRUE FALSE 3476.610978 3243.584963 4805.396161 3596.246421 3278.326709 3000.558426 3159.605211 3386.576949 3189.408897 4117.943561 0.844259016 0.787671058 1.166940753 0.873311246 0.796107732 0.728654578 0.767277444 0.822395183 0.774514961 1 12.00770834 -6.526762748 15.04084143 0.802474786 0.935373646 0.172856045 0.114308732 1.265762611 4884.739887 0.033581926 0.044091044 2.97E-07 6.526762748 0.13289886 EMISLLS(ph)PQK ddPTM_K562_Paclitaxel_30min_R1 2 EMISLLSPQK 10 0 Q9Y2D8-2;Q9Y2D8-3;Q9Y2D8;S4R403 Q9Y2D8-2 SSX2IP Afadin- and alpha-actinin-binding protein 1 EMISLLS(1)PQK;EMIS(0.001)LLS(0.999)PQK 100.04 0.0098877 15634100 2936.94 2853.4 4572.8 2988.85 2264.69 2501.62 2289.06 3206.8 2690.89 3647.6 TRUE FALSE 2978.066221 3164.943862 3418.340084 2797.158539 2573.17912 2945.247183 2723.397185 2934.362324 2949.362008 2904.217118 1.025428231 1.089775225 1.177026354 0.963136854 0.886014721 1.014127754 0.937738838 1.010379805 1.015544599 1 11.5039336 -6.284298344 24.8076475 0.972045357 1.096646467 0.544402821 0.051138884 518.6457889 562858.0573 0.01473661 0.021874896 5.20E-07 6.284298344 0.12460111 EMPQDLRS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 2 EMPQDLRSPAR 11 1 O43765;K7EMD6 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 1 EMPQDLRS(1)PAR;EMPQDLRS(1)PAR 95.428 0.0090733 192913000 4913.5 5224.3 6440.4 5619.1 5189.4 4702.5 5041.1 6128.4 3150.4 7503.8 TRUE FALSE 4982.304159 5794.706741 4814.441366 5258.716076 5896.284137 5536.422349 5997.622409 5607.754168 3453.009996 5974.521441 0.833925229 0.969903079 0.805828787 0.880190343 0.986904842 0.926672103 1.00386658 0.938611439 0.577955913 1 12.54460744 -12.37890334 2.493107671 1.962411457 0.890692711 0.078320042 0.118435274 22153990.3 4721950.209 120119993.9 0.029709576 4.18E-13 12.37890334 -1.071718745 EMPQDLRS(ph)PART(ph)PPSEEDSAEAER ddPTM_K562_Paclitaxel_30min_R1 3 EMPQDLRSPARTPPSEEDSAEAER 24 2 O43765;K7EMD6 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 2 EMPQDLRS(1)PART(1)PPSEEDSAEAER;EMPQDLRS(0.711)PART(0.948)PPS(0.279)EEDS(0.063)AEAER;EMPQDLRS(0.902)PART(0.914)PPS(0.088)EEDS(0.096)AEAER 75.611 0.00058648 152826000 5969.4 5749.2 7441.5 6189.3 5467.4 5240 5621.5 6298.7 4753.4 6935.2 TRUE FALSE 6052.990017 6376.917099 5562.80129 5792.346 6212.152444 6169.240427 6688.150279 5763.58612 5209.985309 5521.802433 1.096198223 1.15486151 1.007424905 1.048995517 1.125022584 1.117251206 1.211225928 1.043787095 0.94352983 1 12.43092355 -8.525655776 8.977221056 0.978605297 1.106850756 0.512341069 0.053547585 0.095026951 100.5956161 0.036037098 0.014561891 2.98E-09 8.525655776 0.128245459 EMPQDLRS(ph)PARTPPSEEDSAEAER ddPTM_K562_Paclitaxel_30min_R1 2 EMPQDLRSPARTPPSEEDSAEAER 24 2 O43765;K7EMD6 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 1 EMPQDLRS(0.88)PART(0.108)PPS(0.011)EEDS(0.001)AEAER;EMPQDLRS(0.992)PART(0.006)PPS(0.001)EEDSAEAER 71.174 0.00079871 108317000 2213.63 2312.96 3062.43 2627.25 2189.55 2335.31 2363.32 2600.97 2521.57 2892.9 TRUE FALSE 2244.62765 2565.496795 2289.281671 2458.749944 2487.803779 2749.444439 2811.747633 2380.001364 2763.778065 2303.325392 0.974516088 1.113822999 0.99390285 1.067478331 1.080092195 1.193684769 1.220734006 1.033289249 1.199907783 1 11.16950252 -6.913978516 2.89668314 1.13713026 1.038542549 0.243947331 0.075267336 0.356198308 6.046604232 0.024098678 0.027605029 1.22E-07 6.913978516 -0.098587711 ENAS(ph)PAPGTTAEEAMSR ddPTM_K562_Paclitaxel_30min_R1 1 ENASPAPGTTAEEAMSR 17 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 ENAS(0.998)PAPGTT(0.002)AEEAMSR 181.86 2.30E-10 36768000 1456.2 1328.1 2226.9 1888.6 1499 1454.5 1354.2 1759.4 1102.9 2027.5 TRUE FALSE 1476.591293 1473.106449 1664.691553 1767.473649 1703.189178 1712.435153 1611.152381 1609.927988 1208.838473 1614.294387 0.914697656 0.912538916 1.031219316 1.094889299 1.055067274 1.060794838 0.998053635 0.997295166 0.748833969 1 10.65668798 -8.561386084 23.56404039 0.873965301 1.012558628 0.314009442 0.079116358 104.8088408 64133.28056 0.054461232 0.020584529 2.75E-09 8.561386084 0.138593327 ENASPAPGT(ph)TAEEAMSR ddPTM_K562_Paclitaxel_30min_R1 1 ENASPAPGTTAEEAMSR 17 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 ENAS(0.001)PAPGT(0.782)T(0.217)AEEAMSR 102.33 0.0045518 53344000 2026.4 1725.2 2534.3 1980.3 1507.2 1687 1985.4 2184.5 1269.7 2703.9 TRUE FALSE 2054.775852 1913.56317 1894.484621 1853.292421 1712.506157 1986.165763 2362.119286 1998.91309 1391.660358 2152.843696 0.9544473 0.88885374 0.879991717 0.860857862 0.795462374 0.922577783 1.09720891 0.92849894 0.646428889 1 11.07202786 -7.476510918 24.64320108 0.926049856 0.874329115 0.033541794 0.112259218 1376.524854 731584.9578 0.040973234 0.036133506 3.34E-08 7.476510918 -0.051720741 ENGEEGCHQNGLALPVVEEGEVLS(ph)HSLEAEHR ddPTM_K562_Paclitaxel_30min_R1 1 ENGEEGCHQNGLALPVVEEGEVLSHSLEAEHR 32 0 Q9HC44 Q9HC44 GPBP1L1 Vasculin-like protein 1 1 ENGEEGCHQNGLALPVVEEGEVLS(0.598)HS(0.402)LEAEHR 106.33 3.47E-14 7564700 1269.9 1017.7 1492.6 1206.1 1028.3 1033.3 1048.6 1327.5 782.64 1441.9 TRUE FALSE 1287.682518 1128.815928 1115.77467 1128.746144 1168.371869 1216.541247 1247.566376 1214.720589 857.8160689 1148.039989 1.121635597 0.983254886 0.971895301 0.983194101 1.017710081 1.059668007 1.08669244 1.058082124 0.747200513 1 10.16495718 -8.735538361 24.99958188 0.873600053 1.031627113 0.440309073 0.072815465 172.454423 166453.3529 0.047733749 0.018028438 1.84E-09 8.735538361 0.15802706 ENGEEGCHQNGLALPVVEEGEVLSHS(ph)LEAEHR ddPTM_K562_Paclitaxel_30min_R1 1 ENGEEGCHQNGLALPVVEEGEVLSHSLEAEHR 32 0 Q9HC44 Q9HC44 GPBP1L1 Vasculin-like protein 1 1 ENGEEGCHQNGLALPVVEEGEVLS(0.287)HS(0.713)LEAEHR 45.878 0.0069505 5901800 877.15 518.19 876.75 870.86 566.7 568.25 655.34 667.92 776.75 816.73 TRUE FALSE 889.4328062 574.7677366 655.403619 815.0069374 643.8941343 669.0211589 779.6873439 611.176027 851.3603081 650.2799777 1.367769018 0.883877339 1.007879131 1.253316979 0.990179855 1.028820173 1.199002538 0.939865978 1.309221162 1 9.344917193 ENGSFS(ph)GK ddPTM_K562_Paclitaxel_30min_R1 1 ENGSFSGK 8 0 H0Y897;H7C556;D3YTG3;Q7Z7G0-2;Q7Z7G0-3;Q7Z7G0-4;Q7Z7G0 H0Y897 ABI3BP Target of Nesh-SH3 1 ENGS(0.005)FS(0.995)GK 90.05 0.011436 42798000 3613.8 3397.3 3695.9 3912.2 3770 3519.4 3618.2 3639.6 3753.7 3683.5 TRUE FALSE 3664.40435 3768.228703 2762.824335 3661.289002 4283.537827 4143.516175 4304.734562 3330.393262 4114.259657 2932.800678 1.24945564 1.284856735 0.942042995 1.248393397 1.460562205 1.412818882 1.467789678 1.135567544 1.402843258 1 11.51806331 -5.234802687 18.40533686 1.272868685 1.249454689 0 0.176974522 3769.079897 2602771.998 0.04538458 1.759210116 5.82E-06 5.234802687 -0.023413996 ENGSGHEASLQLRPPPEPST(ph)PVSGQDDLIQHQDMR ddPTM_K562_Paclitaxel_30min_R1 2 ENGSGHEASLQLRPPPEPSTPVSGQDDLIQHQDMR 35 1 A0A2R8Y7W5;A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8YF61 A0A2R8Y7W5 CDK13 Cyclin-dependent kinase 13 1 ENGSGHEAS(0.001)LQLRPPPEPS(0.28)T(0.711)PVS(0.007)GQDDLIQHQDMR;ENGSGHEASLQLRPPPEPS(0.204)T(0.795)PVS(0.001)GQDDLIQHQDMR 99.863 3.93E-13 46949000 1068.99 1203.74 1877.86 1520.54 1182.89 935.23 1311.22 1548.08 1191.78 2017.91 TRUE FALSE 1083.959158 1335.168404 1403.771018 1423.01937 1344.019644 1101.079909 1560.01715 1416.560941 1306.255794 1606.658834 0.674666665 0.83102173 0.87372066 0.885701021 0.836530828 0.685322786 0.970969764 0.881681232 0.813026242 1 10.6498479 -15 0.06572765 1.551268849 0.618162285 0.333157344 0.081463945 457.6065756 2.174960367 39.73548202 5.59309889 1.00E-15 15 -0.933106564 ENHGQADHS(ph)PSMTATHFPR ddPTM_K562_Paclitaxel_30min_R1 1 ENHGQADHSPSMTATHFPR 19 0 Q9Y3L3;Q6ZT62-2;Q6ZT62;Q9Y3L3-2 Q9Y3L3 SH3BP1 SH3 domain-binding protein 1 1 ENHGQADHS(0.984)PS(0.015)MT(0.002)ATHFPR 63.979 0.02024 69844000 625.86 525.43 591.86 644.12 731.03 666.28 577.52 1086.6 514.96 578.25 TRUE FALSE 634.6239709 582.7982243 442.437623 602.8090262 830.6086624 784.435403 687.1014051 994.2865477 564.4242089 460.4023326 1.37841172 1.265845507 0.960980411 1.309309236 1.80409308 1.703804146 1.492393406 2.159603628 1.225936901 1 8.846751333 -6.605928864 6.080945541 1.623845512 1.196611638 0.206924192 0.313824902 0.257994092 14.90329317 0.088343201 0.114626866 2.48E-07 6.605928864 -0.427233874 ENLSPT(ph)SSQMIQQSHDNPSNSLCEAPLNISR ddPTM_K562_Paclitaxel_30min_R1 1 ENLSPTSSQMIQQSHDNPSNSLCEAPLNISR 31 0 Q8NEM0;Q8NEM0-3 Q8NEM0 MCPH1 Microcephalin 1 ENLS(0.1)PT(0.375)S(0.375)S(0.147)QMIQQS(0.002)HDNPSNSLCEAPLNISR 119.96 2.43E-17 34519000 792.5 564.21 1087 1128 828.78 511.55 826.28 945.14 807.73 811.48 TRUE FALSE 803.5974451 625.8123558 812.5734062 1055.655129 941.6738674 602.26621 983.0623165 864.8444576 885.3160755 646.0999306 1.243766493 0.968599943 1.257659021 1.633888318 1.457474027 0.932156438 1.521532924 1.338561446 1.370246356 1 9.33561351 -12.18797823 2.17624739 0.22432824 1.302397859 0.15725286 0.21019156 3707334.037 697132.9565 14191011.46 0.058121662 6.49E-13 12.18797823 1.078069619 ENLSPTSS(ph)QMIQQSHDNPSNSLCEAPLNISR ddPTM_K562_Paclitaxel_30min_R1 1 ENLSPTSSQMIQQSHDNPSNSLCEAPLNISR 31 0 Q8NEM0;Q8NEM0-3 Q8NEM0 MCPH1 Microcephalin 1 ENLS(0.001)PT(0.026)S(0.28)S(0.414)QMIQQS(0.28)HDNPSNSLCEAPLNISR 100.14 6.92E-12 30295000 423.21 436.94 452.81 467.45 334.8 351.46 394.79 440.41 319.35 698.39 TRUE FALSE 429.1362457 484.6465868 338.4925152 437.4698492 380.4054282 413.7864963 469.6993416 402.9944215 350.0249944 556.0577346 0.771747642 0.871576019 0.608736277 0.786734582 0.684111387 0.744143046 0.844695276 0.724734855 0.629475992 1 9.119090873 -11.30940551 5.646329892 1.000032403 0.743017549 0.484576502 0.08020651 3.23E-05 3.95E-06 0.076631152 0.018583444 4.90E-12 11.30940551 -0.257014853 ENMET(ph)GTGLTPVMTQALR ddPTM_K562_Paclitaxel_30min_R1 1 ENMETGTGLTPVMTQALR 18 0 Q96HE9;J3QQS2;J3QRE1 Q96HE9 PRR11 Proline-rich protein 11 1 ENMET(0.693)GT(0.306)GLTPVMTQALR 72.801 0.015278 7861200 1254.2 1280.5 1682.5 1537.8 1485.5 1294.4 1002.3 1005.4 1239.4 1007.6 TRUE FALSE 1271.76267 1420.30932 1257.732066 1439.172391 1687.85025 1523.943666 1192.481193 919.9849945 1358.449908 802.2505669 1.585243716 1.770406129 1.567754662 1.793918821 2.103894119 1.899585651 1.486419882 1.146755182 1.693298782 1 9.647909094 -7.936848716 4.724490965 1.313779062 1.788843073 0.524974886 0.217773396 0.173734684 7.714105222 0.096706655 0.06315826 1.16E-08 7.936848716 0.475064012 ENNS(ph)PALHIGS(ph)VSATDRDSGTNAQVT(ph)YS(ph)LLPPR ddPTM_K562_Paclitaxel_30min_R1 1 ENNSPALHIGSVSATDRDSGTNAQVTYSLLPPR 33 1 Q9Y5E8 Q9Y5E8 PCDHB15 Protocadherin beta-15 4 ENNS(0.998)PALHIGS(0.996)VS(0.257)AT(0.281)DRDS(0.281)GT(0.281)NAQVT(0.293)Y(0.3)S(0.313)LLPPR 42.828 0.010082 44595000 2090.9 1545 1282 2011.9 1859.9 1713.9 2022.9 1986.3 2457.3 1671.4 TRUE FALSE 2120.179051 1713.688325 958.3432444 1882.865739 2113.249868 2017.836101 2406.734715 1817.551417 2693.334645 1330.767763 1.593199889 1.287744093 0.720143117 1.414871769 1.587992983 1.516294697 1.808530972 1.365791589 2.023895318 1 10.37804311 -6.515887261 23.18895619 1.572772813 1.185501706 0.19058508 0.32041453 177.7695233 589617.3944 0.090060382 0.121347742 3.05E-07 6.515887261 -0.387271107 ENNSGTCLDS(ph)PLPLR ddPTM_K562_Paclitaxel_30min_R1 1 ENNSGTCLDSPLPLR 15 0 Q17RS7 Q17RS7 GEN1 Flap endonuclease GEN homolog 1 1 ENNSGT(0.001)CLDS(0.999)PLPLR 116.58 0.0012099 10319000 858.25 727.69 847.02 778.8 720.97 808.21 724.12 788.15 619.75 928 TRUE FALSE 870.2681479 807.1416551 633.1793252 728.8512538 819.1783201 951.5346957 861.5179898 721.191738 679.2797566 738.8730906 1.177831699 1.092395521 0.856952748 0.986436322 1.108686093 1.287818852 1.165989127 0.976069838 0.919345643 1 9.529182777 -8.397402176 6.587468771 0.956138893 1.090529653 0.229482903 0.110135977 0.426680675 20.86204437 0.070003109 0.033043134 4.00E-09 8.397402176 0.13439076 ENPPGPPIAASAPGPS(ph)QSLGLNVHNMTPATSPIGASGVAHR ddPTM_K562_Paclitaxel_30min_R1 1 ENPPGPPIAASAPGPSQSLGLNVHNMTPATSPIGASGVAHR 41 0 O95155;O95155-4;O95155-2 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 ENPPGPPIAAS(0.018)APGPS(0.439)QS(0.102)LGLNVHNMT(0.023)PAT(0.158)S(0.158)PIGAS(0.103)GVAHR 47.871 0.0010717 49844000 698.72 648.42 800.54 621.73 674.17 521.42 686.99 783.72 545.45 815.22 TRUE FALSE 708.5042357 719.2166884 598.433776 581.8550206 766.0033678 613.8865159 817.3427662 717.1380942 597.8429096 649.0777165 1.091555322 1.108059436 0.921975537 0.896433518 1.180141219 0.945782763 1.259237138 1.104857055 0.92106522 1 9.342247418 -6.764666152 24.99985088 1.077156336 1.006007614 0.067801974 0.113535932 237.5124275 1840158.736 0.035418415 0.041839634 1.72E-07 6.764666152 -0.071148722 ENQEPLRS(ph)PEVGDEEALRPLTK ddPTM_K562_Paclitaxel_30min_R1 1 ENQEPLRSPEVGDEEALRPLTK 22 2 P48681 P48681 NES Nestin 1 ENQEPLRS(1)PEVGDEEALRPLTK 54.511 0.016181 18330000 1109.4 1175.5 2664.5 1692.5 1255.1 1226.6 1066.5 1648.7 1082.2 1835.8 TRUE FALSE 1124.935023 1303.845065 1991.814021 1583.950625 1426.065869 1444.120288 1268.862807 1508.632644 1186.150145 1461.662952 0.769626829 0.892028537 1.362704047 1.083663387 0.975646175 0.987998146 0.868095347 1.03213442 0.811507293 1 10.51339496 -7.221043702 2.356132955 0.933163126 1.038007435 0.062301019 0.15411357 0.891813 9.735984628 0.062503294 0.059293752 6.01E-08 7.221043702 0.104844308 ENQPENSQT(ph)PTKK ddPTM_K562_Paclitaxel_30min_R1 1 ENQPENSQTPTKK 13 1 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 ENQPENS(0.005)QT(0.968)PT(0.028)KK 86.005 0.026288 14634000 2622.3 1735.8 5572.4 3091.8 2290.8 1704.4 1617.7 2843.9 1248.9 3856.1 TRUE FALSE 2659.02029 1925.320514 4165.578701 2893.505786 2602.845744 2006.651409 1924.65013 2602.292944 1368.862425 3070.224703 0.866066998 0.627094334 1.35676672 0.942441048 0.847770439 0.653584543 0.626875983 0.847590387 0.445850893 1 11.58412853 -7.028480637 3.411221413 0.700866843 0.951998454 0.206658629 0.214755249 0.379210786 9.13922603 0.072467213 0.076974078 9.37E-08 7.028480637 0.251131611 ENQPENSQTPT(ph)KK ddPTM_K562_Paclitaxel_30min_R1 2 ENQPENSQTPTKK 13 1 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 ENQPENS(0.002)QT(0.337)PT(0.661)KK;ENQPENS(0.001)QT(0.047)PT(0.951)KK 109.15 3.33E-05 14990000 7000.1 5207 16945.4 8344 5935.8 4883.9 4109.4 7865.2 4334.2 11189.9 TRUE FALSE 7098.122997 5775.517869 12667.32419 7808.853186 6744.356454 5749.991092 4889.137197 7197.002167 4750.519276 8909.392238 0.796701145 0.648250488 1.421794423 0.876474284 0.756993998 0.645385335 0.548762145 0.807799452 0.533203517 1 13.12111131 -6.770831668 3.591200711 0.688808687 0.955060514 0.191448814 0.223084981 0.353318003 9.699689819 0.070798573 0.08688853 1.69E-07 6.770831668 0.266251827 ENS(ph)SLLDS(ph)IFWMAAPKNRRT(ph)IEVNR ddPTM_K562_Paclitaxel_30min_R1 1 ENSSLLDSIFWMAAPKNRRTIEVNR 25 3 B3KQX1;Q9BYC8 B3KQX1 MRPL32 "39S ribosomal protein L32, mitochondrial" 3 ENS(0.522)S(0.522)LLDS(0.97)IFWMAAPKNRRT(0.986)IEVNR 45.885 0.020103 128550000 50.749 0 0 0 0 0 0 0 0 0 TRUE FALSE 51.45964257 0 0 0 0 0 0 0 0 0 0 ENSFGS(ph)PLEFR ddPTM_K562_Paclitaxel_30min_R1 4 ENSFGSPLEFR 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 ENS(0.001)FGS(0.999)PLEFR;ENSFGS(1)PLEFR;ENS(0.027)FGS(0.973)PLEFR;ENSFGS(1)PLEFR 141.59 0.00057011 142274100 7434.4 7339.7 10202.1 9467.9 6905.3 7553.2 7140.9 8349.2 5730.82 10438 TRUE FALSE 7538.504537 8141.073267 7626.453677 8860.671271 7845.918768 8892.653968 8495.848497 7639.883346 6281.290867 8310.72987 0.907080925 0.979585836 0.917663526 1.066172455 0.944070965 1.070020817 1.022274653 0.919279469 0.755804961 1 13.02075947 -8.519165633 24.92271541 0.864449052 0.987131265 0.254898828 0.075944578 179.2659394 1203296.567 0.046832042 0.018546873 3.03E-09 8.519165633 0.122682213 ENSIWDEK ddPTM_K562_Paclitaxel_30min_R1 1 ENSIWDEK 8 0 H3BPZ3;A0A0A0MRF9;P16885 H3BPZ3 PLCG2 "Phosphoinositide phospholipase C;1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-2" 0 82.75 0.022253 50007000 1494 1482.1 1242.2 1406.8 1341.8 1750.3 1353.5 1408.9 658.62 1503.6 FALSE TRUE 1514.920609 1643.92069 928.5912467 1316.574145 1524.575877 2060.69113 1610.319559 1289.205151 721.8833938 1197.165495 1.265422881 1.373177474 0.775658212 1.09974281 1.273487988 1.72130849 1.345110235 1.076881314 0.602993819 1 10.22540689 -8.550939862 5.660983618 0.805030508 1.259069356 0.372192192 0.239341022 0.205028082 19.18705192 0.177649939 0.066984559 2.81E-09 8.550939862 0.454038848 ENTLFDIHRS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 1 ENTLFDIHRSPAR 13 1 Q9ULI0-2;Q9ULI0;C9JG15 Q9ULI0-2 ATAD2B ATPase family AAA domain-containing protein 2B 1 ENTLFDIHRS(1)PAR 103.67 0.0047685 37852000 1817 1652.6 2053.6 2155.1 1628.6 1387.4 1600 1803.3 1522 2215.8 TRUE FALSE 1842.443606 1833.036457 1535.143281 2016.881532 1850.442892 1633.43591 1903.591647 1650.098409 1668.1949 1764.218744 1.044339662 1.039007472 0.870154728 1.143215114 1.048873842 0.925869264 1.078999786 0.935313954 0.945571464 1 10.78481373 -8.288136841 24.85228449 0.955332025 1.018403856 0.124524664 0.073693277 1531.537892 1425676.893 0.039784541 0.019121251 5.15E-09 8.288136841 0.063071831 ENVEYIEREES(ph)DGEYDEFGR ddPTM_K562_Paclitaxel_30min_R1 7 ENVEYIEREESDGEYDEFGR 20 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 ENVEYIEREES(0.985)DGEY(0.015)DEFGR;ENVEY(0.007)IEREES(0.974)DGEY(0.02)DEFGR;ENVEYIEREES(0.999)DGEY(0.001)DEFGR;ENVEY(0.001)IEREES(0.984)DGEY(0.016)DEFGR;ENVEYIEREES(1)DGEYDEFGR;ENVEYIEREES(0.951)DGEY(0.049)DEFGR;ENVEYIEREES(0.999)DGEY(0.001)DEFGR 104.97 0.00029522 2472844000 5962.62 5674.61 8168.25 7167.58 5824.02 5730.22 5885.43 7695.22 4997.33 8261.19 TRUE FALSE 6046.115076 6294.18311 6106.074264 6707.8835 6617.350125 6746.394061 7002.159618 7041.463029 5477.345875 6577.554943 0.91920404 0.956918363 0.928319766 1.019814134 1.006050148 1.025668979 1.064553573 1.070528956 0.83273282 1 12.68333568 -6.260601288 24.93428769 1.009368646 0.937024484 0.192825338 0.062648923 112.4189611 3344536.268 0.017143234 0.027658093 5.49E-07 6.260601288 -0.072344162 ENVGNVVS(ph)LGS(ph)AVST(ph)SNK ddPTM_K562_Paclitaxel_30min_R1 1 ENVGNVVSLGSAVSTSNK 18 0 Q63HK3-2;Q63HK3 Q63HK3-2 ZKSCAN2 Zinc finger protein with KRAB and SCAN domains 2 3 ENVGNVVS(1)LGS(0.5)AVS(0.5)T(0.5)S(0.5)NK 63.462 0.017686 18945000 2966.8 2647.6 2532.5 2665.8 2854.5 2671.3 2838.8 2997.7 2647.8 3033.1 TRUE FALSE 3008.344353 2936.673922 1893.139053 2494.82752 3243.331227 3145.017548 3377.44748 2743.026674 2902.133021 2414.952555 1.245715717 1.216037936 0.783923912 1.033075169 1.343020682 1.302310284 1.398556453 1.135851165 1.201735005 1 11.23777913 -6.748507795 24.96884186 1.249056936 1.059729961 0.193791936 0.157131111 342.9233013 662127.5835 0.04832277 0.061988033 1.78E-07 6.748507795 -0.189326975 ENYS(ph)DS(ph)EEEDDDDVASSR ddPTM_K562_Paclitaxel_30min_R1 1 ENYSDSEEEDDDDVASSR 18 0 Q9Y2U8 Q9Y2U8 LEMD3 Inner nuclear membrane protein Man1 2 ENY(0.004)S(0.828)DS(0.922)EEEDDDDVAS(0.24)S(0.005)R 170.22 1.22E-09 33920000 859.55 987.23 1136.8 856.43 947.66 703.94 858.27 928.56 871 854.36 TRUE FALSE 871.5863519 1095.01911 849.8007802 801.502413 1076.747336 828.7738752 1021.122252 849.6730321 954.6634417 680.240963 1.2812906 1.609751793 1.249264344 1.178262493 1.582891056 1.218353378 1.501118438 1.249076545 1.403419514 1 9.409902075 -12.96131455 0.448777111 9.89E-13 1.370790907 0.352232213 0.147671181 183.8542967 6.478547295 175.9512165 0.076667194 1.09E-13 12.96131455 1.370790907 ENYSDS(ph)EEEDDDDVASSR ddPTM_K562_Paclitaxel_30min_R1 2 ENYSDSEEEDDDDVASSR 18 0 Q9Y2U8 Q9Y2U8 LEMD3 Inner nuclear membrane protein Man1 1 ENYS(0.066)DS(0.934)EEEDDDDVASSR;ENYS(0.083)DS(0.917)EEEDDDDVASSR 244.89 2.02E-65 89362000 1981.41 1700.49 2768.9 2259.9 1914.84 2630.7 1765.24 2420.1 1100.93 3071.9 TRUE FALSE 2009.155853 1886.155249 2069.85695 2114.960129 2175.673627 3097.217708 2100.185075 2214.497399 1206.679246 2445.845094 0.821456706 0.771167092 0.846274752 0.864715486 0.889538602 1.266318017 0.858674607 0.90541196 0.493358818 1 11.25611732 -6.277687493 2.091535853 0.91061372 0.800176068 0.048556397 0.177268187 1.101623171 9.398654403 0.056347095 0.108069354 5.28E-07 6.277687493 -0.110437652 EPAITSQNS(ph)PEAR ddPTM_K562_Paclitaxel_30min_R1 3 EPAITSQNSPEAR 13 0 A0A1W2PRL9;A0A1W2PPZ5;P23193-2;P23193;E5RIS7 A0A1W2PRL9 TCEA1 Transcription elongation factor A protein 1 1 EPAITS(0.005)QNS(0.995)PEAR;EPAIT(0.002)S(0.018)QNS(0.981)PEAR;EPAITS(0.001)QNS(0.999)PEAR 141.06 4.21E-05 49690000 1507.53 1472.52 2248.08 1857.83 1662.55 1667.82 1976.87 2263.62 936.96 2170.5 TRUE FALSE 1528.640071 1633.294713 1680.5244 1738.677099 1889.017457 1963.58446 2351.970763 2071.311352 1026.959194 1728.150909 0.884552422 0.945111162 0.97244077 1.006091014 1.093085938 1.13623437 1.360975335 1.198570878 0.594253192 1 10.75501349 -6.329776027 1.619448994 1.09149899 0.917751815 0.080428909 0.185714856 0.901532545 4.622262859 0.062658181 0.127508461 4.68E-07 6.329776027 -0.173747175 EPAITSQNS(ph)PEAREESTSSGNVSNR ddPTM_K562_Paclitaxel_30min_R1 2 EPAITSQNSPEAREESTSSGNVSNR 25 1 A0A1W2PRL9;A0A1W2PPZ5;P23193-2;P23193 A0A1W2PRL9 TCEA1 Transcription elongation factor A protein 1 1 EPAIT(0.011)S(0.047)QNS(0.94)PEAREES(0.001)T(0.001)SSGNVSNR;EPAIT(0.002)S(0.003)QNS(0.993)PEAREES(0.001)T(0.001)SSGNVSNR 99.964 1.28E-05 65315000 571.74 521.5 913.01 652.4 779.02 626.23 568.72 691.39 467.27 742.78 TRUE FALSE 579.746124 578.4391336 682.5093335 610.557984 885.1357129 737.2830978 676.6316511 632.652104 512.1533713 591.4010283 0.980292722 0.978082732 1.154055034 1.032392497 1.496675979 1.246671992 1.14411646 1.069751444 0.866000137 1 9.207992942 -8.553743813 3.91043395 0.934820003 1.152373902 0.252731819 0.145439383 0.329389753 10.93553686 0.116199926 0.041607269 2.79E-09 8.553743813 0.217553899 EPALPLEPDSGGNT(ph)SPGVTANGEAR ddPTM_K562_Paclitaxel_30min_R1 1 EPALPLEPDSGGNTSPGVTANGEAR 25 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;Q5VY93 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 EPALPLEPDS(0.002)GGNT(0.333)S(0.333)PGVT(0.333)ANGEAR 75.646 0.00030023 12635000 2568.6 2635.5 3317.4 2773.6 2499.7 2449.1 2398.9 3128.2 2155.6 3468.9 TRUE FALSE 2604.568325 2923.252803 2479.881341 2595.71371 2840.20146 2883.413498 2854.078752 2862.439884 2362.655011 2761.936276 0.943022599 1.058407042 0.897877827 0.939816654 1.028337071 1.04398263 1.03336155 1.036388822 0.855434295 1 11.43146432 -6.761085247 24.99920531 1.005312305 0.962404089 0.081105885 0.063667673 25.22436115 1780543.963 0.01952813 0.023666661 1.73E-07 6.761085247 -0.042908215 EPALPLEPDSGGNTS(ph)PGVTANGEAR ddPTM_K562_Paclitaxel_30min_R1 2 EPALPLEPDSGGNTSPGVTANGEAR 25 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;Q5VY93 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 EPALPLEPDSGGNT(0.287)S(0.713)PGVTANGEAR;EPALPLEPDS(0.097)GGNT(0.185)S(0.695)PGVT(0.023)ANGEAR 143.47 7.18E-20 102310000 4985.4 5333.8 6119.2 5651.6 5094.6 4387.3 4991.3 6912.6 4179.4 7079.8 TRUE FALSE 5055.210981 5916.162322 4574.332279 5289.131672 5788.570772 5165.326054 5938.373119 6325.331483 4580.850044 5636.932874 0.8968017 1.049535706 0.811493126 0.938299566 1.026900781 0.916336272 1.053475933 1.122122903 0.812649387 1 12.46069467 -6.624594101 6.807485304 0.99401149 0.923114441 0.101089556 0.094419284 0.505130105 29.45489759 0.02742439 0.035469073 2.37E-07 6.624594101 -0.070897049 EPEAASSRGS(ph)PVR ddPTM_K562_Paclitaxel_30min_R1 1 EPEAASSRGSPVR 13 1 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 EPEAAS(0.032)S(0.145)RGS(0.824)PVR 84.62 0.017297 16287000 1805.3 1756.4 2562.3 2011.7 1713.9 1789.7 2060.5 2346.7 1592.5 2677.6 TRUE FALSE 1830.57977 1948.169692 1915.415675 1882.678566 1947.362197 2107.078166 2451.469118 2147.333187 1745.46674 2131.90365 0.85865971 0.91381695 0.898453209 0.883097398 0.913438183 0.988355251 1.149896769 1.007237446 0.818736222 1 11.05792652 -7.233607509 3.946943106 1.003981667 0.892499656 0.299095338 0.075854059 0.289310042 10.18024513 0.027795622 0.026622798 5.84E-08 7.233607509 -0.111482011 EPEDNS(ph)PNTCQVISVIQDHPFK ddPTM_K562_Paclitaxel_30min_R1 1 EPEDNSPNTCQVISVIQDHPFK 22 0 Q9BXL5 Q9BXL5 HEMGN Hemogen 1 EPEDNS(0.5)PNT(0.5)CQVISVIQDHPFK 142.85 9.85E-17 7303800 3153.6 2423.2 5427.4 3492.8 2509.7 2621.1 2493.4 3791.7 1831.3 4319.4 TRUE FALSE 3197.76013 2687.773171 4057.185745 3268.787441 2851.56363 3085.915283 2966.509634 3469.571418 2007.204547 3439.103909 0.929823644 0.781532993 1.179721768 0.950476498 0.829158904 0.897302136 0.862582147 1.008859142 0.583641728 1 11.74781699 -6.679582738 7.038007621 0.865855954 0.964449037 0.100434444 0.141958414 0.558920376 40.05901714 0.041094092 0.053020291 2.09E-07 6.679582738 0.098593083 EPES(ph)PPASAPIPLFGADTIGQR ddPTM_K562_Paclitaxel_30min_R1 2 EPESPPASAPIPLFGADTIGQR 22 0 Q96AY4 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 EPES(0.835)PPAS(0.165)APIPLFGADTIGQR;EPES(0.626)PPAS(0.374)APIPLFGADTIGQR 116.58 1.33E-05 13625600 2127.2 1787.97 2425.1 2513.8 1945.81 1997.19 2000.22 2263.01 1607.52 2603.6 TRUE FALSE 2156.987363 1983.186611 1812.853512 2352.576119 2210.862265 2351.363605 2379.751303 2070.753175 1761.929479 2072.984891 1.040522472 0.956681653 0.874513615 1.134873742 1.066511519 1.134288829 1.147982947 0.998923429 0.849948056 1 11.01749389 -4.845494868 18.65628893 1.024866763 12.99270782 0.000477001 0.100054909 7155.918176 862586.4562 0.025926301 6311.95807 1.43E-05 4.845494868 11.96784106 EPGGRS(ph)PAFVQLAPLSSK ddPTM_K562_Paclitaxel_30min_R1 1 EPGGRSPAFVQLAPLSSK 18 1 P51610-2;P51610;A6NEM2;P51610-4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 EPGGRS(1)PAFVQLAPLSSK 101.67 0.00073379 20560000 983.34 1142 1494.6 1245.8 966.3 809.19 926.65 1146 1247 1382 TRUE FALSE 997.1097939 1266.687422 1117.269745 1165.899964 1097.92642 952.6884849 1102.477 1048.640147 1366.779922 1100.347641 0.906177063 1.151170207 1.01537887 1.059574193 0.997799585 0.865806813 1.001935169 0.953008038 1.24213464 1 10.10374368 -8.736379562 24.99998555 1.121067678 0.998140481 0.232841542 0.092100453 288.5115678 287824.2065 0.061125374 0.02308285 1.83E-09 8.736379562 -0.122927197 EPGPIAPS(ph)TNSSPVLK ddPTM_K562_Paclitaxel_30min_R1 1 EPGPIAPSTNSSPVLK 16 0 Q14674-2;Q14674 Q14674-2 ESPL1 Separin 1 EPGPIAPS(0.288)T(0.288)NS(0.212)S(0.212)PVLK 100.4 0.0035165 8725900 1013.4 872.89 1550.6 769.62 860.54 654.09 724.21 1278.3 632.51 1216 TRUE FALSE 1027.590727 968.1950821 1159.131852 720.2600179 977.7601171 770.0836776 861.6250669 1169.700436 693.2654116 968.1785325 1.061364916 1.000017094 1.19722945 0.74393306 1.009896506 0.795394291 0.889944404 1.208145396 0.716051212 1 9.919129295 -6.249617148 24.99566315 0.916394795 1.077585133 0.240112403 0.143759121 1179.736598 2494304.577 0.037611073 0.064494115 5.63E-07 6.249617148 0.161190338 EPGPIAPSTNS(ph)SPVLK ddPTM_K562_Paclitaxel_30min_R1 1 EPGPIAPSTNSSPVLK 16 0 Q14674-2;Q14674 Q14674-2 ESPL1 Separin 1 EPGPIAPS(0.002)T(0.009)NS(0.619)S(0.37)PVLK 137.79 5.66E-08 9780600 2483.6 1997.9 3661.9 2690.4 2089.9 1804.7 1969.1 3139.6 1961.2 3557.4 TRUE FALSE 2518.378063 2216.037478 2737.408055 2517.849786 2374.579762 2124.738206 2342.726446 2872.871383 2149.582023 2832.399927 0.88913223 0.782388623 0.966462408 0.888945718 0.838363163 0.750154731 0.827117111 1.014288751 0.758926027 1 11.46780927 -11.39508931 3.150123307 1.001740896 0.859266376 0.215330504 0.081639454 91686578.13 111795714.7 1435534.743 0.019820676 4.03E-12 11.39508931 -0.14247452 EPGRPTPTYHLVPNT(ph)SQSQVEEDVSSPPQR ddPTM_K562_Paclitaxel_30min_R1 2 EPGRPTPTYHLVPNTSQSQVEEDVSSPPQR 30 1 H3BSB6;H3BPV6;H3BUR2;H3BUA4;H3BNF5;E7EPZ8;Q92536 H3BSB6 SLC7A6 Y+L amino acid transporter 2 1 EPGRPT(0.014)PT(0.016)Y(0.016)HLVPNT(0.679)S(0.209)QS(0.066)QVEEDVSSPPQR;EPGRPT(0.001)PT(0.002)Y(0.001)HLVPNT(0.478)S(0.478)QS(0.036)QVEEDVS(0.003)S(0.001)PPQR 58.776 0.0023554 91429000 1256.96 1303.76 1714.3 1572.64 1686.9 1511.14 1473.54 1779.68 1632.73 1877.55 TRUE FALSE 1274.561318 1446.108926 1281.503763 1471.777909 1916.684339 1779.119462 1753.136523 1628.485076 1789.561012 1494.904279 0.852603966 0.967358878 0.85724804 0.984529866 1.282145195 1.190122663 1.172741658 1.089357424 1.197107424 1 10.54583739 -6.579519751 5.962315257 1.161607552 0.902796337 0.715776089 0.075517214 0.099026593 7.293609111 0.021652351 0.028247814 2.63E-07 6.579519751 -0.258811215 EPHLNYS(ph)PTCLEPPVLSIHPGAID ddPTM_K562_Paclitaxel_30min_R1 1 EPHLNYSPTCLEPPVLSIHPGAID 24 0 O75054;O75054-2 O75054 IGSF3 Immunoglobulin superfamily member 3 1 EPHLNY(0.059)S(0.614)PT(0.327)CLEPPVLSIHPGAID 64.701 0.0032822 15501000 862.59 866.73 1079 1209.6 880.81 882.01 873.98 1327.8 846.27 1039.8 TRUE FALSE 874.6689213 961.3625125 806.5931051 1132.02167 1000.791234 1038.422089 1039.813143 1214.995102 927.5580147 827.8881892 1.056506099 1.161222645 0.974277826 1.367360574 1.208848305 1.254302336 1.255982578 1.467583567 1.120390443 1 9.693292127 -6.259718136 24.9999361 1.258755008 1.073724237 0.275359681 0.127225658 181.845654 2641177.452 0.033045245 0.053707584 5.50E-07 6.259718136 -0.185030771 EPHLNYSPT(ph)CLEPPVLSIHPGAID ddPTM_K562_Paclitaxel_30min_R1 1 EPHLNYSPTCLEPPVLSIHPGAID 24 0 O75054;O75054-2 O75054 IGSF3 Immunoglobulin superfamily member 3 1 EPHLNY(0.055)S(0.169)PT(0.776)CLEPPVLSIHPGAID 55.734 0.018842 15343000 1022.7 1064.4 1451 1367.4 890.98 1065.3 1179 1340.9 1459.7 1775.9 TRUE FALSE 1037.020955 1180.614792 1084.677104 1279.701084 1012.34656 1254.215997 1402.709095 1226.982175 1599.910707 1413.970605 0.733410547 0.834964169 0.767114324 0.905040798 0.715960117 0.887017023 0.992035542 0.867756494 1.131502099 1 10.46553641 -7.859606834 1.009380319 1.029424412 0.792967677 0.604874858 0.078026023 0.379535507 0.744921491 0.057123755 0.029916812 1.38E-08 7.859606834 -0.236456735 EPLIPAS(ph)PKAEPIWELPTR ddPTM_K562_Paclitaxel_30min_R1 1 EPLIPASPKAEPIWELPTR 19 1 Q9Y613 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 1 EPLIPAS(1)PKAEPIWELPTR 74.793 0.0082423 31998000 4269.7 3452.9 6678.7 4558 3046.2 3036.3 3421.1 4513.6 2542.7 5509.2 TRUE FALSE 4329.488973 3829.899299 4992.579584 4265.670281 3461.144013 3574.745173 4070.235866 4130.141507 2786.937696 4386.422016 0.987020619 0.873126043 1.138189523 0.972471473 0.789058599 0.814956965 0.92791707 0.941574133 0.635355578 1 12.0988289 -6.650902988 6.536697631 0.850985816 0.997463251 0.281028331 0.111116991 0.286223376 15.42394194 0.032432222 0.041915683 2.23E-07 6.650902988 0.146477436 EPSAPSIPTPAY(ph)QSSPAGGHAPTPPTPAPR ddPTM_K562_Paclitaxel_30min_R1 1 EPSAPSIPTPAYQSSPAGGHAPTPPTPAPR 30 0 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 1 EPSAPSIPT(0.003)PAY(0.332)QS(0.332)S(0.332)PAGGHAPTPPTPAPR 72.822 0.00031054 108210000 2482.7 2136.9 2939.6 2355.7 2387.3 2036.3 2292.5 2449.4 1580 3000.7 TRUE FALSE 2517.46546 2370.213969 2197.461623 2204.615946 2712.490677 2397.409214 2727.489907 2241.308181 1731.76606 2389.155693 1.053705067 0.992071792 0.919764932 0.92275943 1.135334413 1.003454576 1.14161246 0.938117255 0.724844373 1 11.22228516 -8.523738784 24.99555329 0.852108354 1.019972249 0.326474074 0.093730379 33.43580165 971565.7175 0.061128558 0.023533946 2.99E-09 8.523738784 0.167863895 EPSAPSIPTPAYQS(ph)SPAGGHAPTPPTPAPR ddPTM_K562_Paclitaxel_30min_R1 1 EPSAPSIPTPAYQSSPAGGHAPTPPTPAPR 30 0 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 1 EPSAPSIPT(0.001)PAY(0.061)QS(0.733)S(0.205)PAGGHAPTPPTPAPR 90.706 5.01E-07 131200000 1580.5 1278.4 1983.6 1424.4 1303.9 1250.2 1443.7 1672.2 1122 2150 TRUE FALSE 1602.631876 1417.980035 1482.815647 1333.045359 1481.513255 1471.905416 1717.634538 1530.136172 1229.773113 1711.82882 0.93621036 0.828342191 0.866217247 0.778725854 0.865456428 0.859843811 1.00339153 0.893860504 0.718397248 1 10.74132273 -7.549631452 24.99486377 0.900288818 0.85117201 0.075088058 0.081932854 646.1962853 603730.748 0.031262225 0.024216236 2.82E-08 7.549631452 -0.049116808 EPSAPSIPTPAYQSS(ph)PAGGHAPT(ph)PPTPAPR ddPTM_K562_Paclitaxel_30min_R1 1 EPSAPSIPTPAYQSSPAGGHAPTPPTPAPR 30 0 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 2 EPS(0.001)APS(0.003)IPT(0.018)PAY(0.132)QS(0.287)S(0.592)PAGGHAPT(0.751)PPT(0.216)PAPR 52.055 0.013305 17584000 573.81 700.38 595.05 751.54 702.35 570.23 530.92 708.19 235.65 639.97 TRUE FALSE 581.8451104 776.8498569 444.822268 703.3395882 798.0219609 671.3522841 631.6592984 648.0248391 258.2852354 509.5437627 1.141894285 1.524598894 0.87298148 1.380332053 1.566149994 1.31755569 1.23965662 1.271774647 0.506895098 1 8.993062249 -8.741003143 23.2360478 0.753448215 1.294870536 0.499216606 0.214647693 71.08831435 80828.81694 0.141254672 0.053198974 1.82E-09 8.741003143 0.541422322 EPSEVPT(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 EPSEVPTPK 9 0 P17096;P17096-2;P17096-3 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 EPSEVPT(1)PK 108.7 0.016741 44273000 4267.7 3511.4 7246.5 4600.5 3296.6 3201.7 3106.1 4420 2634.1 6141 TRUE FALSE 4327.460967 3894.786527 5417.031451 4305.444521 3745.652732 3769.476541 3695.46626 4044.493411 2887.117074 4889.460829 0.885058929 0.796567692 1.10789955 0.880556092 0.76606662 0.770939102 0.755802406 0.827185973 0.590477596 1 12.25545967 -6.658845137 4.661118936 0.774456697 0.927593534 0.234183013 0.118267519 0.287832012 10.60493644 0.034337785 0.044520968 2.19E-07 6.658845137 0.153136837 EPT(ph)PSIASDIS(ph)LPIATQELR ddPTM_K562_Paclitaxel_30min_R1 1 EPTPSIASDISLPIATQELR 20 0 A0A499FIX8;H7BXI1;A0A087WXU3;A0FGR8-5;A0FGR8-2;A0FGR8;A0FGR8-6 A0A499FIX8 ESYT2 Extended synaptotagmin-2 2 EPT(0.514)PS(0.413)IAS(0.093)DIS(0.916)LPIAT(0.065)QELR 81.226 0.013341 8790000 2421 1720.9 2211.8 1893.5 1913.8 1648.5 2550.4 2992.2 1987.8 3917.6 TRUE FALSE 2454.901469 1908.793682 1653.403735 1772.059385 2174.491961 1940.838329 3034.325086 2737.993933 2178.737072 3119.19097 0.787031475 0.611951529 0.530074545 0.568115066 0.697133321 0.622224913 0.972792341 0.877789773 0.698494287 1 11.60695617 -7.748494063 24.99931653 0.877084908 0.629857542 0.602335445 0.099769991 161.6074881 312088.2227 0.038825552 0.029880545 1.78E-08 7.748494063 -0.247227367 EPTPS(ph)IASDISLPIATQELR ddPTM_K562_Paclitaxel_30min_R1 1 EPTPSIASDISLPIATQELR 20 0 A0A499FIX8;H7BXI1;A0A087WXU3;A0FGR8-5;A0FGR8-2;A0FGR8;A0FGR8-6 A0A499FIX8 ESYT2 Extended synaptotagmin-2 1 EPT(0.203)PS(0.785)IAS(0.006)DIS(0.005)LPIATQELR 64.298 0.029041 0 147.33 117.57 0 0 180.7 0 68.131 0 140.15 207.72 TRUE FALSE 149.3930746 130.4066902 0 0 205.3143993 0 81.05850158 0 153.6120337 165.38655 0.903296396 0.788496345 0 0 1.241421381 0 0.490115439 0 0.928806083 1 7.369698102 -8.902215316 8.88565525 0.998673635 0.426773166 0.208744965 0.418847945 0.393723963 30.26536166 0.401291721 0.10372495 1.25E-09 8.902215316 -0.571900469 EPTPSIAS(ph)DISLPIATQELR ddPTM_K562_Paclitaxel_30min_R1 3 EPTPSIASDISLPIATQELR 20 0 A0A499FIX8;H7BXI1;A0A087WXU3;A0FGR8-5;A0FGR8-2;A0FGR8;A0FGR8-6 A0A499FIX8 ESYT2 Extended synaptotagmin-2 1 EPTPSIAS(0.709)DIS(0.291)LPIATQELR;EPTPS(0.019)IAS(0.916)DIS(0.065)LPIATQELR;EPT(0.179)PS(0.019)IAS(0.76)DIS(0.041)LPIAT(0.001)QELR 122.1 2.42E-06 148482000 1172.69 818.73 1036.55 1011.85 817.95 978.87 1493.45 1027.84 703.46 1669.27 TRUE FALSE 1189.111278 908.1217102 774.8601326 946.9544699 929.368638 1152.45885 1776.824341 940.5185764 771.0304761 1329.071858 0.894692993 0.683275103 0.583008457 0.712493056 0.699261393 0.867115532 1.336891103 0.707650659 0.580127005 1 10.37620339 -7.30935346 5.384667416 0.909632496 0.705158186 0.176745781 0.198101361 0.378458927 26.34355457 0.074244123 0.066133157 4.91E-08 7.30935346 -0.20447431 EPVAGS(ph)PFERR ddPTM_K562_Paclitaxel_30min_R1 2 EPVAGSPFERR 11 1 Q96JB3-2;Q96JB3 Q96JB3-2 HIC2 Hypermethylated in cancer 2 protein 1 EPVAGS(1)PFERR;EPVAGS(1)PFERR 93.348 0.0088407 38766000 2904.2 2589.2 3165.3 3007 2898.3 2092.24 2541.1 3264.7 2072.86 3526.1 TRUE FALSE 2944.86776 2871.897612 2366.180867 2814.144479 3293.097529 2463.269387 3023.26046 2987.343357 2271.967465 2807.478884 1.048936744 1.022945401 0.842813415 1.002374228 1.172973213 0.877395517 1.076859554 1.064066189 0.809255406 1 11.45505946 -8.746888251 24.99782219 0.904627619 1.010681801 0.159888811 0.099693309 384.1608881 659968.623 0.067344602 0.025205474 1.79E-09 8.746888251 0.106054181 EQAEAEVASLNRR ddPTM_K562_Paclitaxel_30min_R1 1 EQAEAEVASLNRR 13 1 P06753-2;A0A087WWU8;P06753-6;P06753-3;P06753-5;P06753-4;D6R904;A0A494C0G0 P06753-2 TPM3 Tropomyosin alpha-3 chain 0 98.592 0.013835 14763000 1813.5 1654.2 2187.4 1872.3 1453.3 1583.2 1423.9 1966.9 1984.6 1834.4 FALSE TRUE 1838.894595 1834.81115 1635.163817 1752.219058 1651.264065 1863.958291 1694.077592 1799.799568 2175.229697 1460.548273 1.259044038 1.256248208 1.119554791 1.199699517 1.130578218 1.276204508 1.159891544 1.232276674 1.489324069 1 10.51229433 -8.530445688 24.99154467 1.28337474 1.19921841 0.003493528 0.121687852 507.0266206 1674521.573 0.075518234 0.028657659 2.95E-09 8.530445688 -0.08415633 EQAEEERYFR ddPTM_K562_Paclitaxel_30min_R1 1 EQAEEERYFR 10 1 A0A0B4J230;Q9UII2-3;Q9UII2-2;Q9UII2 A0A0B4J230 ATPIF1 "ATPase inhibitor, mitochondrial" 0 117.71 0.026497 68928000 1037.1 1016.2 1497.1 1137.6 853.11 1138 791.43 1051.8 1818.9 936.54 FALSE TRUE 1051.6226 1127.152153 1119.138589 1064.639428 969.3180253 1339.808322 941.599711 962.4430249 1993.613472 745.6726339 1.410300649 1.511591148 1.50084439 1.427757141 1.299924365 1.796778185 1.262752136 1.290704501 2.67357736 1 9.542398586 EQDNSESPNGRTS(ph)PLVSQNNEQGSTLR ddPTM_K562_Paclitaxel_30min_R1 1 EQDNSESPNGRTSPLVSQNNEQGSTLR 27 1 A0A1W2PNZ9;Q15652-3;Q15652;H7BXU7 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 EQDNS(0.014)ES(0.076)PNGRT(0.085)S(0.822)PLVS(0.003)QNNEQGSTLR 63.576 0.0013376 40260000 797.1 691.57 973.31 618.9 746.3 553.94 713.64 848.47 305.58 882.29 TRUE FALSE 808.2618593 767.0779513 727.5858528 579.2065241 847.958695 652.1734813 849.0494645 776.3871775 334.9323244 702.4788137 1.150585389 1.091958841 1.035740635 0.824518139 1.207095045 0.928388826 1.208647788 1.105210808 0.476786371 1 9.456310905 -8.732765093 24.99988234 0.738392757 1.065092947 0.397679828 0.162700649 170.1989121 148389.7869 0.103022882 0.03892401 1.85E-09 8.732765093 0.326700191 EQDVVTGVS(ph)PLLFR ddPTM_K562_Paclitaxel_30min_R1 1 EQDVVTGVSPLLFR 14 0 Q6P0Q8-2;Q6P0Q8 Q6P0Q8-2 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 EQDVVT(0.054)GVS(0.946)PLLFR 137.32 1.38E-05 15028000 805.82 578.85 1159.2 1051.6 972.62 803.59 678.05 825.78 344.05 1049.2 TRUE FALSE 817.1039662 642.0508005 866.5456232 984.1550828 1105.107311 946.0954035 806.7064478 755.6248346 377.0975398 835.3724641 0.978131314 0.768580278 1.037316479 1.178103331 1.322891714 1.1325432 0.965684748 0.90453644 0.451412461 1 9.706275779 -8.369721478 2.79341479 0.720872247 1.064805417 0.324097372 0.186283586 0.327244696 4.8365593 0.134497921 0.054222879 4.27E-09 8.369721478 0.34393317 EQFLDGDGWTSR ddPTM_K562_Paclitaxel_30min_R1 2 EQFLDGDGWTSR 12 0 K7EJB9;P27797 K7EJB9 CALR Calreticulin 0 ; 170.4 0.00075244 219780000 6343.1 5711.9 7305.3 5843.7 5419.9 5643.2 5442.6 6797.8 4959.6 7921.6 FALSE TRUE 6431.92297 6335.544558 5460.986664 5468.911237 6158.18214 6643.942286 6475.304938 6220.284459 5435.99174 6307.173572 1.01977897 1.004498209 0.865837384 0.867093822 0.976377464 1.053394553 1.026657165 0.986223764 0.861874448 1 12.62277792 -5.547805451 24.98293393 0.956415269 1.015958995 0.11161995 0.065315238 472.433582 473497.6766 0.018403034 0.048692701 2.83E-06 5.547805451 0.059543726 EQGVLSFWR ddPTM_K562_Paclitaxel_30min_R1 1 EQGVLSFWR 9 0 P12236;P05141 P12236 SLC25A6;SLC25A5 "ADP/ATP translocase 3;ADP/ATP translocase 3, N-terminally processed;ADP/ATP translocase 2;ADP/ATP translocase 2, N-terminally processed" 0 145.9 0.0028543 6934300 857.72 1037.8 1180.2 1067.3 952.74 930.94 1066.3 1213 950.77 1790 FALSE TRUE 869.7307263 1151.110514 882.2439135 998.8481551 1082.519318 1096.029138 1268.624859 1109.948079 1042.095707 1425.197017 0.61025298 0.807685183 0.61903295 0.700849176 0.759557664 0.769036929 0.89013999 0.778803257 0.731194139 1 10.47694565 -7.140604117 1.571036146 0.830645407 0.687677423 0.415168768 0.084961241 0.43238195 2.138346596 0.034426715 0.034291663 7.23E-08 7.140604117 -0.142967983 EQIS(ph)DIDDAVR ddPTM_K562_Paclitaxel_30min_R1 2 EQISDIDDAVR 11 0 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 1 EQIS(1)DIDDAVR;EQIS(1)DIDDAVR 127.07 0.001492 36155000 1920.9 2006.95 2514.5 2267 1683.21 1587.82 1821.91 2648.2 1475.54 2764.5 TRUE FALSE 1947.798526 2226.075588 1879.683376 2121.604767 1912.491699 1869.397583 2167.607911 2423.21888 1617.27221 2201.093383 0.884923167 1.011349907 0.853977115 0.963886759 0.868882581 0.849304077 0.984786892 1.100915981 0.734758563 1 11.10400464 -7.791628441 24.99256481 0.963525031 0.908866627 0.055331834 0.097598915 624.2402651 516782.9965 0.039326219 0.026517509 1.62E-08 7.791628441 -0.054658405 EQISDIDDAVR ddPTM_K562_Paclitaxel_30min_R1 1 EQISDIDDAVR 11 0 P53999 P53999 SUB1 Activated RNA polymerase II transcriptional coactivator p15 0 131.37 0.005678 13176000 1835.9 1755.7 2310.7 2246.9 1546.7 1583.5 2041.5 2669.5 1250.7 2775 FALSE TRUE 1861.608264 1947.393263 1727.335207 2102.793891 1757.386726 1864.311492 2428.863968 2442.709313 1370.835323 2209.453477 0.842565043 0.881391387 0.781792975 0.951725806 0.795394311 0.843788526 1.099305323 1.105571734 0.620440909 1 11.10947384 EQMLDT(ph)SS(ph)LLQFMR ddPTM_K562_Paclitaxel_30min_R1 1 EQMLDTSSLLQFMR 14 0 A0A0A0MTR7;A0A0A0MTC1;Q63HN8-5;Q63HN8;Q63HN8-4 A0A0A0MTR7 RNF213 E3 ubiquitin-protein ligase RNF213 2 EQMLDT(0.939)S(0.181)S(0.88)LLQFMR 45.764 0.031002 14351000 100.43 100.04 65.533 103.63 152.59 67.099 0 163.48 0 196.13 TRUE FALSE 101.8363299 110.9627055 48.98838365 96.98363563 173.3753414 78.99806553 0 149.5913536 0 156.1585983 0.65213399 0.710576982 0.313709166 0.621058569 1.110251649 0.505883546 0 0.957945033 0 1 7.286868198 -7.502750033 24.85726498 0.452690244 0.674233541 0.060906425 0.359084073 1952.820339 2411575.044 0.122812209 0.106908388 3.14E-08 7.502750033 0.221543296 EQSEVSVS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 EQSEVSVSPR 10 0 E9PI52;Q7L4I2 E9PI52 RSRC2 Arginine/serine-rich coiled-coil protein 2 1 EQSEVSVS(1)PR;EQSEVSVS(1)PR;EQSEVS(0.006)VS(0.994)PR;EQSEVSVS(1)PR 182.23 0.00023866 1438313000 8814.4 8306.6 11377.6 9437.3 8065.9 7527.6 8952.8 9608.8 6206.88 10164.1 TRUE FALSE 8937.828795 9213.542679 8505.184164 8832.033818 9164.612137 8862.514167 10651.54706 8792.472464 6803.078557 8092.650841 1.104437714 1.138507377 1.050976291 1.091364745 1.132461083 1.095131168 1.316200003 1.086476191 0.840648965 1 12.98239664 -8.63111024 6.191814917 0.924308972 1.131699275 0.549413107 0.075700008 0.154850945 7.762998747 0.053376606 0.019486606 2.34E-09 8.63111024 0.207390303 EQSSDLTPSGDVS(ph)PVKPLSR ddPTM_K562_Paclitaxel_30min_R1 2 EQSSDLTPSGDVSPVKPLSR 20 1 Q8WYQ5-3;Q8WYQ5 Q8WYQ5-3 DGCR8 Microprocessor complex subunit DGCR8 1 EQSSDLTPS(0.003)GDVS(0.951)PVKPLS(0.045)R;EQSSDLTPSGDVS(0.999)PVKPLS(0.001)R 152.4 1.96E-12 250560000 2315.33 2369.76 3855.61 2918.14 1921.03 1538.57 1838.42 2903.65 1702.77 3477.72 TRUE FALSE 2347.751763 2628.498411 2882.21357 2730.983562 2182.706809 1811.413787 2187.250598 2656.966808 1866.328667 2768.958755 0.847882533 0.949273226 1.04090159 0.986285389 0.788277112 0.654185904 0.789918085 0.959554491 0.674018226 1 11.43512785 -6.764204791 24.99005737 0.800075978 0.961657372 0.288050521 0.110817036 86.03424314 777462.2484 0.033780409 0.040031578 1.72E-07 6.764204791 0.161581394 EQSSEAAETGVS(ph)ENEENPVR ddPTM_K562_Paclitaxel_30min_R1 1 EQSSEAAETGVSENEENPVR 20 0 Q29RF7 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A 1 EQSSEAAET(0.189)GVS(0.811)ENEENPVR 162.83 4.46E-42 0 653.44 514.14 474.71 566.24 269.11 423.32 511.43 437.11 336.2 527.11 TRUE FALSE 662.590176 570.2755439 354.8635894 529.9239008 305.7673381 498.3898583 608.4711727 399.9747771 368.4935122 419.6846927 1.578780898 1.358819023 0.845548088 1.262671501 0.728564428 1.187534039 1.44982932 0.953036373 0.878024666 1 8.713162034 -5.564413455 5.371510838 1.054089494 1.531824144 0.432225933 0.203643652 0.156164307 10.74996813 0.052916603 0.153770384 2.73E-06 5.564413455 0.477734651 EQTLHT(ph)PVMMQTPQLTSTIMR ddPTM_K562_Paclitaxel_30min_R1 1 EQTLHTPVMMQTPQLTSTIMR 21 0 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 1 EQT(0.135)LHT(0.864)PVMMQT(0.001)PQLTSTIMR 61.304 0.023192 17206000 1285 1387.4 1898.4 1740.9 1379 1386.2 1228.6 1931.1 909.21 2076.6 TRUE FALSE 1302.993965 1538.881024 1419.125441 1629.246466 1566.843147 1632.023107 1461.720436 1767.041001 996.543683 1653.38778 0.788075236 0.930744162 0.858313735 0.98539888 0.947656179 0.987078244 0.884075989 1.068739604 0.602728347 1 10.69120941 -4.48003437 1.466304733 0.925351649 1.11E-08 0.090444393 0.120323933 24.81200757 8.759261788 0.031464632 58.30711155 3.31E-05 4.48003437 -0.925351638 EQTLHT(ph)PVMMQTPQLTSTIMREPK ddPTM_K562_Paclitaxel_30min_R1 1 EQTLHTPVMMQTPQLTSTIMREPK 24 1 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 1 EQT(0.235)LHT(0.765)PVMMQTPQLTSTIMREPK 64.779 0.0054054 18953000 1489.5 1495.7 3101.9 1835.3 1413.8 1364.4 1414.7 2210.6 1691.3 2795.3 TRUE FALSE 1510.357596 1659.005584 2318.786981 1717.592072 1606.383496 1606.357183 1683.13194 2022.795732 1853.756922 2225.616326 0.678624423 0.745414007 1.041862856 0.771737722 0.72177018 0.721758357 0.75625431 0.90886992 0.83291846 1 11.11998919 -9.05421685 1.076752975 0.994769495 0.784639291 0.301284583 0.099217265 0.805680953 2.076083129 0.100307489 0.032518935 8.83E-10 9.05421685 -0.210130204 EQTLS(ph)PTITSGLHNIAR ddPTM_K562_Paclitaxel_30min_R1 4 EQTLSPTITSGLHNIAR 17 0 H7BXG7;D6REX3;O94979-7;O94979-6;O94979-3;O94979-10;O94979-4;O94979-9;O94979-2;O94979;O94979-8;H0Y8W8 H7BXG7 SEC31A Protein transport protein Sec31A 1 EQT(0.136)LS(0.657)PT(0.207)IT(0.001)SGLHNIAR;EQT(0.02)LS(0.599)PT(0.381)ITSGLHNIAR;EQT(0.004)LS(0.481)PT(0.481)IT(0.034)SGLHNIAR;EQT(0.033)LS(0.578)PT(0.246)IT(0.142)S(0.001)GLHNIAR 237.16 7.60E-51 415005000 8066.6 8788 9955.3 8619.3 7829.6 7465.4 8772.6 11708.1 7303.9 11724.6 TRUE FALSE 8179.557288 9747.503559 7441.961389 8066.496677 8896.124076 8789.283871 10437.15505 10713.42383 8005.47223 9335.120084 0.876213398 1.044175487 0.797200392 0.864102079 0.952973716 0.941528742 1.118052576 1.147647136 0.857564997 1 13.18845287 -7.5976178 6.320528961 1.042835001 0.909934178 0.27595713 0.094170988 0.267462252 17.72386309 0.036365427 0.028053977 2.53E-08 7.5976178 -0.132900823 EQTLSPT(ph)ITSGLHNIAR ddPTM_K562_Paclitaxel_30min_R1 1 EQTLSPTITSGLHNIAR 17 0 H7BXG7;D6REX3;O94979-7;O94979-6;O94979-3;O94979-10;O94979-4;O94979-9;O94979-2;O94979;O94979-8;H0Y8W8 H7BXG7 SEC31A Protein transport protein Sec31A 1 EQT(0.005)LS(0.041)PT(0.942)IT(0.007)S(0.005)GLHNIAR 241.13 8.41E-51 53917000 1457.7 1650.6 1460 1602.4 1311 1066.1 1293.6 2040.4 991.96 1518 TRUE FALSE 1478.112297 1830.81809 1091.404943 1499.629236 1489.580395 1255.157866 1539.053847 1867.055284 1087.24219 1208.630767 1.222964315 1.514786931 0.9030094 1.240767054 1.232452819 1.03849571 1.273386289 1.544768953 0.899565211 1 10.23915786 -5.737391363 24.99983133 1.168828671 1.368875439 0.163443463 0.19817153 450.9968362 468840.0536 0.048903769 0.129243741 1.83E-06 5.737391363 0.200046767 EQVANSAFVER ddPTM_K562_Paclitaxel_30min_R1 3 EQVANSAFVER 11 0 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 ;; 175.74 3.58E-07 133109000 2625.68 2521.18 3659.63 2989.85 2752.2 2626.43 2496.16 2845.56 2115.27 3204.75 FALSE TRUE 2662.447621 2796.450958 2735.711145 2798.094403 3127.096235 3092.190484 2969.793329 2603.811917 2318.451135 2551.620191 1.043434141 1.095951101 1.072146691 1.09659518 1.225533583 1.211853745 1.163885338 1.020454347 0.908619215 1 11.31719788 -8.45015784 4.114356625 0.955467622 1.131320484 0.601146085 0.058805232 0.166240524 5.311823231 0.041488079 0.017614758 3.55E-09 8.45015784 0.175852862 EQYVPPRS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 EQYVPPRSPK 10 1 X6RLN4;Q71RC2-2;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;Q71RC2-6 X6RLN4 LARP4 La-related protein 4 1 EQYVPPRS(1)PK;EQYVPPRS(1)PK 87.719 0.014929 29029000 6728.6 5207.5 10374 6842.5 5716.1 5414.1 4678.4 7736.9 4456.1 8987.1 TRUE FALSE 6822.82116 5776.072461 7754.955396 6403.652676 6494.729594 6374.214617 5566.101977 7079.602053 4884.128315 7155.524087 0.953504045 0.807218645 1.083771825 0.894924341 0.907652537 0.890810308 0.777874815 0.989389731 0.682567518 1 12.80484172 -7.0963843 1.953853128 0.860702158 0.935866261 0.081732061 0.107384813 0.868861406 6.584052002 0.038993551 0.040064826 8.01E-08 7.0963843 0.075164103 ERDHS(ph)PTPSVFNS(ph)DEERYR ddPTM_K562_Paclitaxel_30min_R1 2 ERDHSPTPSVFNSDEERYR 19 2 Q6UN15-3;Q6UN15-5;Q6UN15 Q6UN15-3 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 2 ERDHS(0.923)PT(0.077)PSVFNS(1)DEERYR;ERDHS(0.93)PT(0.068)PS(0.008)VFNS(0.93)DEERY(0.064)R 71.143 0.0088352 305030000 2598.7 2037.71 3284.4 2220.18 2154.74 2296.46 1864.89 2401.4 2077.83 2612.4 TRUE FALSE 2635.089818 2260.194069 2455.212599 2077.787592 2448.252068 2703.704937 2218.743142 2197.386081 2277.414855 2079.991446 1.266875315 1.086636233 1.180395527 0.99894045 1.177049104 1.299863489 1.066707821 1.05643996 1.094915491 1 11.02236188 -7.959366365 24.9999877 1.057720867 1.159953091 0.311819807 0.082301069 210.0826944 129253.7066 0.035026246 0.023614649 1.10E-08 7.959366365 0.102232224 ERDHS(ph)PTPSVFNSDEER ddPTM_K562_Paclitaxel_30min_R1 2 ERDHSPTPSVFNSDEER 17 1 Q6UN15-3;Q6UN15-5;Q6UN15 Q6UN15-3 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 ERDHS(0.988)PT(0.012)PSVFNSDEER;ERDHS(0.934)PT(0.066)PSVFNSDEER 102.24 0.0011173 94586000 3117.88 2297.83 3314.44 2688.79 2332.41 2422.82 2161.8 3174.21 1628.52 3242.99 TRUE FALSE 3161.539939 2548.71485 2477.66863 2516.343044 2650.12373 2852.473109 2571.990265 2904.541048 1784.946622 2582.066858 1.224422183 0.987083213 0.959567961 0.974546045 1.026357517 1.104724729 0.99609747 1.124889946 0.691285982 1 11.33431064 -8.748267155 24.99999985 0.845642896 1.041381472 0.378431148 0.104176437 204.5970952 388316.3252 0.067797494 0.025286234 1.79E-09 8.748267155 0.195738575 ERDHS(ph)PTPSVFNSDEERYR ddPTM_K562_Paclitaxel_30min_R1 1 ERDHSPTPSVFNSDEERYR 19 2 Q6UN15-3;Q6UN15-5;Q6UN15 Q6UN15-3 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 ERDHS(0.919)PT(0.074)PS(0.006)VFNSDEERYR 53.504 0.027672 656990000 1279.5 1096.1 1654.9 1304.6 1180.5 1096.2 1062.9 1558.3 1429.6 1469.3 TRUE FALSE 1297.416948 1215.775905 1237.100027 1220.928795 1341.304086 1290.595679 1264.579726 1425.912688 1566.919468 1169.855853 1.10904001 1.039252743 1.057480735 1.043657466 1.146555007 1.103209147 1.080970551 1.218878962 1.339412427 1 10.19211506 -8.258998164 23.87348262 1.20935928 1.081948151 0.228378906 0.083716476 131.0252115 1281368.964 0.039572344 0.021450085 5.51E-09 8.258998164 -0.127411129 EREDS(ph)GDAEAHAFK ddPTM_K562_Paclitaxel_30min_R1 1 EREDSGDAEAHAFK 14 1 Q9NPI1;Q9NPI1-2 Q9NPI1 BRD7 Bromodomain-containing protein 7 1 EREDS(1)GDAEAHAFK 73.984 0.030737 14148000 2010.8 1483.9 3329 2321.1 1830.5 1678.5 1445.5 2670 1732.1 2880.7 TRUE FALSE 2038.957404 1645.91722 2488.552777 2172.235035 2079.845091 1976.158408 1719.776079 2443.166834 1898.475944 2293.611759 0.888972336 0.71760934 1.084993032 0.947080528 0.906799105 0.861592377 0.749811328 1.065205053 0.827723322 1 11.16340549 -14.99989468 0.399651723 2.665641325 0.894546995 0.071926102 0.112418541 2284.038089 16.05503039 3318.439645 0.070944931 1.00E-15 14.99989468 -1.77109433 EREES(ph)EDELEEANGNNPIDIEVDQNK ddPTM_K562_Paclitaxel_30min_R1 2 EREESEDELEEANGNNPIDIEVDQNK 26 1 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 1 EREES(1)EDELEEANGNNPIDIEVDQNK;EREES(1)EDELEEANGNNPIDIEVDQNK 138.24 7.54E-16 89680000 2784.9 2392 6438.7 3417.5 2828.1 2418.1 2211.07 3590.1 2410.6 4710 TRUE FALSE 2823.897192 2653.166649 4813.170552 3198.316846 3213.3351 2846.916083 2630.60899 3285.098596 2642.148901 3750.099415 0.753019288 0.70749235 1.283478122 0.852861882 0.856866644 0.759157496 0.701477134 0.876003069 0.704554362 1 11.87271313 -6.869336445 2.97899443 0.795674836 0.913908767 0.057723059 0.165963427 0.683737227 12.19711471 0.055718806 0.065340173 1.35E-07 6.869336445 0.11823393 ERENMDTDDERQYQDFLEDLEEDEAIR ddPTM_K562_Paclitaxel_30min_R1 1 ERENMDTDDERQYQDFLEDLEEDEAIR 27 2 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 0 77.053 6.37E-05 3459100 195.1 173.22 257.6 228.67 176.73 279.72 279.84 365.87 283.08 320.3 FALSE TRUE 197.8320019 192.1327454 192.565694 214.0041297 200.8036181 329.3244145 332.9381791 334.7870598 310.2710988 255.0226842 0.775742764 0.753394726 0.755092413 0.839157232 0.787395124 1.291353417 1.305523782 1.312773649 1.216641178 1 7.99448177 -7.257944736 24.90777969 1.249823354 0.782221709 0.863400641 0.087852254 91.40678143 651495.631 0.028235834 0.027167822 5.52E-08 7.257944736 -0.467601645 ERENMDTDDERQYQDFLEDLEEDEAIRK ddPTM_K562_Paclitaxel_30min_R1 1 ERENMDTDDERQYQDFLEDLEEDEAIRK 28 3 C9JA08;Q96D46 C9JA08 NMD3 60S ribosomal export protein NMD3 0 60.347 0.0008531 17955000 869.81 740.08 1833.9 1115.2 832.66 532.9 656.68 1153.6 1087.5 1283.7 FALSE TRUE 881.9900236 820.8844372 1370.909264 1043.676063 946.0823891 627.4023327 781.2816019 1055.594479 1191.959234 1022.081235 0.862935345 0.803149895 1.341291882 1.021128289 0.925643047 0.613847815 0.764402647 1.032789218 1.166207922 1 9.997294151 -8.508406235 23.50764491 1.088568894 0.91069461 0.143812737 0.183049584 638.6006038 1037295.693 0.1169287 0.05266803 3.10E-09 8.508406235 -0.177874284 ERERDHS(ph)PTPSVFNSDEER ddPTM_K562_Paclitaxel_30min_R1 2 ERERDHSPTPSVFNSDEER 19 2 Q6UN15-3;Q6UN15-5;Q6UN15 Q6UN15-3 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 ERERDHS(0.99)PT(0.007)PS(0.002)VFNSDEER;ERERDHS(0.991)PT(0.009)PSVFNSDEER 97.081 0.00048786 56015000 2454.5 2629.2 3747.9 2696.47 2907.3 2183.3 2352.09 2460.54 2786.4 3310 TRUE FALSE 2488.870573 2916.264947 2801.696292 2523.530483 3303.323481 2570.4776 2798.386799 2251.501769 3054.04617 2635.420183 0.944392317 1.10656546 1.063092827 0.957543886 1.253433324 0.975357788 1.061837052 0.854323642 1.158846012 1 11.36381728 -10.40143239 6.346100239 1.000000002 1.041127379 0.012888052 0.109402995 72182590.76 0 0.100321717 0.025080429 3.97E-11 10.40143239 0.041127377 ERERDHS(ph)PTPSVFNSDEERYR ddPTM_K562_Paclitaxel_30min_R1 2 ERERDHSPTPSVFNSDEERYR 21 3 Q6UN15-3;Q6UN15-5;Q6UN15 Q6UN15-3 FIP1L1 Pre-mRNA 3-end-processing factor FIP1 1 ERERDHS(0.937)PT(0.061)PS(0.001)VFNSDEERYR;ERERDHS(0.879)PT(0.117)PS(0.004)VFNSDEERYR 88.264 0.00026189 190802000 1023.12 989.25 1487.15 1220.33 1064.16 1127.15 1016.65 1272.09 1879.37 1398.29 TRUE FALSE 1037.446837 1097.25966 1111.70059 1142.063496 1209.116608 1327.034227 1209.55403 1164.018014 2059.891886 1113.31773 0.931851535 0.985576382 0.998547458 1.025819912 1.086048102 1.191963615 1.086441002 1.045539815 1.850228223 1 10.12064967 -7.819372517 0.902914127 1.33022153 0.99184689 0.246644219 0.219188011 0.836557427 1.319978436 0.167928871 0.092892027 1.52E-08 7.819372517 -0.338374641 EREVDEDS(ph)EPER ddPTM_K562_Paclitaxel_30min_R1 2 EREVDEDSEPER 12 1 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 EREVDEDS(1)EPER;EREVDEDS(1)EPER 108.14 0.0046255 9659600 2777.8 2467.8 3978.7 3024.6 2398.5 2252.4 2413.3 3057.5 1985 3659.2 TRUE FALSE 2816.69777 2737.24275 2974.227977 2830.615694 2725.216307 2651.831515 2871.211077 2797.746291 2175.668119 2913.453031 0.966790176 0.939518407 1.020860108 0.971567299 0.935390507 0.910202254 0.985501069 0.960285359 0.746766155 1 11.50851434 -8.601393439 24.99999982 0.866761712 0.961180488 0.233950968 0.063385362 41.63236437 13253.51887 0.039575001 0.014957945 2.50E-09 8.601393439 0.094418776 EREVDEDS(ph)EPEREVR ddPTM_K562_Paclitaxel_30min_R1 2 EREVDEDSEPEREVR 15 2 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 EREVDEDS(1)EPEREVR;EREVDEDS(1)EPEREVR 129.42 0.00041929 300988000 2913.9 2688.22 3095.5 3008 2460.01 2406.83 2206.29 3135.7 3048.4 3226.2 TRUE FALSE 2954.70359 2981.728951 2314.00274 2815.080343 2795.10501 2833.647507 2624.92201 2869.302713 3341.212441 2568.698669 1.150272559 1.16079359 0.900846319 1.095916924 1.088140483 1.103145161 1.021887869 1.11702581 1.300741298 1 11.32682194 -8.526150925 24.97277542 1.169874942 1.073241596 0.085924949 0.096731757 195.8358067 1494503.493 0.062196652 0.02376526 2.98E-09 8.526150925 -0.096633346 ERGDES(ph)PLGAEGAK ddPTM_K562_Paclitaxel_30min_R1 2 ERGDESPLGAEGAK 14 1 K7EKN5;A0A590UJ23;A0A590UJ36;A6NDB9 K7EKN5 PALM3 Paralemmin-3 1 ERGDES(1)PLGAEGAK;ERGDES(1)PLGAEGAK 97.713 0.0046135 25731000 5698.2 5308.5 11776.2 6981.7 5835.5 5204.7 4249.2 7020.8 6325.3 7889.5 TRUE FALSE 5777.99238 5888.099982 8803.152664 6533.925011 6630.393896 6127.680467 5055.463518 6424.339218 6932.873327 6281.615569 0.91982585 0.937354398 1.401415379 1.04016633 1.055523666 0.975494345 0.804803074 1.02272085 1.103676793 1 12.61691994 -7.116168978 3.044673689 0.972048068 1.085511739 0.088716427 0.141379021 0.642430233 11.37454715 0.052460588 0.053215355 7.65E-08 7.116168978 0.113463671 ERGS(ph)ELS(ph)T(ph)TSPSGTS(ph)LADDDR ddPTM_K562_Paclitaxel_30min_R1 1 ERGSELSTTSPSGTSLADDDR 21 1 Q96MC4 Q96MC4 KIAA1731NL Protein DDC8 homolog 4 ERGS(0.878)ELS(0.526)T(0.526)T(0.532)S(0.532)PS(0.016)GT(0.016)S(0.975)LADDDR 46.131 0.023701 1860300 580.52 499.89 641.75 440.02 475.99 438.05 286.89 495.06 457.62 587.02 TRUE FALSE 588.6490711 554.4696807 479.7322754 411.7990867 540.8278966 515.732017 341.3258798 453.0015629 501.5764457 467.3850018 1.259452205 1.186323221 1.026417779 0.881070392 1.157135754 1.10344152 0.730288474 0.969225716 1.073154773 1 8.868467629 -5.723887735 3.024948809 0.985280723 1.24565762 0.407809117 0.113195487 0.255340892 4.640629091 0.031789966 0.098496139 1.89E-06 5.723887735 0.260376897 ERGS(ph)PLLGDHAVR ddPTM_K562_Paclitaxel_30min_R1 1 ERGSPLLGDHAVR 13 1 Q9C073;D6RFX7;D6RJ87 Q9C073 FAM117A Protein FAM117A 1 ERGS(1)PLLGDHAVR 75.316 0.025071 4943300 644.55 618.9 1001.5 840.04 788.34 796.81 652.16 853.11 817.28 1054.5 TRUE FALSE 653.5756886 686.473595 748.6589386 786.1635943 895.7252547 938.1130657 775.9039555 780.6329806 895.7833957 839.5923212 0.7784441 0.817627291 0.891693408 0.936363488 1.066857369 1.117343551 0.924143702 0.929776227 1.066926618 1 9.713545162 -6.094364417 1.588808245 1.012379645 0.788054421 0.683897883 0.058796245 0.259876013 1.250295258 0.020013816 0.0546811 8.05E-07 6.094364417 -0.224325224 ERLDGENIY(ph)IR ddPTM_K562_Paclitaxel_30min_R1 3 ERLDGENIYIR 11 1 P11171;P11171-7;A0A2R8YCW8;A0A2R8Y5G2;A0A2R8Y5Z6;P11171-2;P11171-3;P11171-4;A0A2R8YD30;A0A2R8Y420;Q4VB86;A0A2R8Y5C8 P11171 EPB41 Protein 4.1 1 ERLDGENIY(1)IR;ERLDGENIY(1)IR;ERLDGENIY(1)IR 166.69 0.0017008 35070600 2491.91 2098.79 3394.82 2988.01 2277.12 1849.61 1606.58 1870.13 1901.37 1761.59 TRUE FALSE 2526.804428 2327.94299 2537.755704 2796.372412 2587.302296 2177.612364 1911.420168 1711.250784 2084.005084 1402.576991 1.801544189 1.659761286 1.809352157 1.993738975 1.844677556 1.552579557 1.362791619 1.220076184 1.485840063 1 10.45386425 -7.587507577 2.129708851 1.26984968 1.82177728 0.788219669 0.13585823 0.15012398 1.381008208 0.062088293 0.045670364 2.59E-08 7.587507577 0.5519276 ERLELCDER ddPTM_K562_Paclitaxel_30min_R1 2 ERLELCDER 9 1 P07919 P07919 UQCRH "Cytochrome b-c1 complex subunit 6, mitochondrial" 0 ; 128.91 0.0069377 26217200 4575.4 4068.3 5334.5 5076.3 4289.6 4881.8 4500.7 5051.7 4393.5 5926.3 FALSE TRUE 4639.469716 4512.490752 3987.739499 4750.728839 4873.916144 5747.518686 5354.68433 4622.526553 4815.515306 4718.516807 0.983247471 0.956336692 0.845125632 1.006826728 1.032933937 1.2180774 1.134823621 0.979656689 1.020556989 1 12.20411773 -6.628104881 2.997354161 1.075592161 0.930758034 0.396131189 0.074016505 0.264197494 4.761868118 0.024839156 0.033524642 2.35E-07 6.628104881 -0.144834128 ERLGS(ph)FGSITR ddPTM_K562_Paclitaxel_30min_R1 3 ERLGSFGSITR 11 1 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 1 ERLGS(0.993)FGS(0.007)ITR;ERLGS(0.999)FGS(0.001)ITR;ERLGS(0.999)FGS(0.001)ITR 98.253 0.0075081 68355000 2649.72 2405.61 2902.16 2725.88 2438.5 2959.02 2580.36 3639.3 2291.51 4334.4 TRUE FALSE 2686.824255 2668.262635 2169.473815 2551.054257 2770.664984 3483.76065 3069.96984 3330.118749 2511.619774 3451.046901 0.778553388 0.77317484 0.628642229 0.739211703 0.802847676 1.00947937 0.889576389 0.964958995 0.727784886 1 11.75281837 -7.01199944 4.204809585 0.914741601 0.72829453 0.533721237 0.083269256 0.167754919 7.03519496 0.027060234 0.028935744 9.73E-08 7.01199944 -0.186447071 ERPES(ph)PMVPSEQVVEEAVPLPPQALTTSQDGHR ddPTM_K562_Paclitaxel_30min_R1 6 ERPESPMVPSEQVVEEAVPLPPQALTTSQDGHR 33 1 Q5T1M5-2;Q5T1M5 Q5T1M5-2 FKBP15 FK506-binding protein 15 1 ERPES(0.986)PMVPS(0.014)EQVVEEAVPLPPQALTTSQDGHR;ERPES(0.949)PMVPS(0.051)EQVVEEAVPLPPQALTTSQDGHR;ERPES(0.916)PMVPS(0.084)EQVVEEAVPLPPQALTTSQDGHR;ERPES(0.984)PMVPS(0.016)EQVVEEAVPLPPQALTTSQDGHR;ERPES(0.835)PMVPS(0.165)EQVVEEAVPLPPQALTTSQDGHR;ERPES(0.972)PMVPS(0.028)EQVVEEAVPLPPQALTTSQDGHR 97.366 1.91E-11 470569000 5140.55 4576.48 7154.58 5217.72 4944.7 4903.03 4528.99 5224.73 4509.7 6337.67 TRUE FALSE 5212.53356 5076.155563 5348.317792 4883.078793 5618.251854 5772.513529 5388.34221 4780.856575 4942.876835 5046.049375 1.032992976 1.005966289 1.059901994 0.967703332 1.113396132 1.143966913 1.067833826 0.947445461 0.979553799 1 12.30093861 -8.255647949 24.8197326 0.972624721 1.056393042 0.365566514 0.048424622 485.767893 2081817.153 0.025801598 0.014372617 5.55E-09 8.255647949 0.083768321 ERPES(ph)PMVPSEQVVEEAVPLPPQALTTSQDGHRR ddPTM_K562_Paclitaxel_30min_R1 4 ERPESPMVPSEQVVEEAVPLPPQALTTSQDGHRR 34 2 Q5T1M5-2;Q5T1M5 Q5T1M5-2 FKBP15 FK506-binding protein 15 1 ERPES(0.995)PMVPS(0.005)EQVVEEAVPLPPQALTTSQDGHRR;ERPES(0.994)PMVPS(0.006)EQVVEEAVPLPPQALTTSQDGHRR;ERPES(0.999)PMVPS(0.001)EQVVEEAVPLPPQALTTSQDGHRR;ERPES(0.997)PMVPS(0.003)EQVVEEAVPLPPQALTTSQDGHRR 119.28 3.93E-18 141442000 3897.05 3734.66 4573.19 4095.51 3175.48 3592.26 3489.28 4192.52 3858.43 4224.96 TRUE FALSE 3951.620723 4142.422809 3418.631624 3832.842319 3608.034137 4229.296873 4151.352665 3836.339257 4229.049441 3363.910833 1.174710306 1.231430622 1.016267016 1.139400689 1.072571277 1.257255939 1.234085227 1.140440234 1.257182384 1 11.71592375 -7.254413841 24.92397159 1.190088551 1.127235452 0.068287305 0.088378741 1276.66427 4529135.693 0.028659069 0.028084388 5.57E-08 7.254413841 -0.062853099 ERPGLGS(ph)NPCIPFFYR ddPTM_K562_Paclitaxel_30min_R1 1 ERPGLGSNPCIPFFYR 16 1 A0A087WYC0;Q08379-2;Q08379 A0A087WYC0 GOLGA2 Golgin subfamily A member 2 1 ERPGLGS(1)NPCIPFFYR 71.376 0.02656 35790000 682.83 548.95 720.47 666.74 428.88 556.37 577.67 646.77 626.71 640.26 TRUE FALSE 692.3917267 608.8862174 538.5784378 623.9782806 487.300717 655.0344077 687.2798669 591.8228515 686.9082957 509.7746606 1.35823096 1.19442229 1.05650296 1.224027652 0.955913965 1.284948936 1.348203275 1.16094992 1.347474382 1 8.993715853 ERPISMINEASNYNVTSDYAVHPMS(ph)PVGR ddPTM_K562_Paclitaxel_30min_R1 2 ERPISMINEASNYNVTSDYAVHPMSPVGR 29 1 B4DJX4;Q9HAU0-5;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;Q9HAU0-3;F5H1X3 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 ERPISMINEASNYNVTSDYAVHPMS(1)PVGR;ERPISMINEASNYNVTSDY(0.001)AVHPMS(0.999)PVGR 152.06 2.91E-32 56171000 1062.3 891.06 1188.43 1164.5 895.7 909.93 862.34 1121.81 869.18 1371.5 TRUE FALSE 1077.175477 988.3489442 888.3961482 1089.814182 1017.709504 1071.293309 1025.964513 1026.505238 952.6686226 1091.987547 0.986435679 0.905091772 0.813558864 0.998009716 0.931979039 0.981049017 0.939538657 0.940033832 0.872417112 1 10.09274069 -6.303989591 24.99982617 0.949236762 0.902034693 0.160904568 0.052255547 906.7884365 532769.8646 0.014728139 0.021845573 4.97E-07 6.303989591 -0.047202069 ERPSGPES(ph)PVQGPR ddPTM_K562_Paclitaxel_30min_R1 1 ERPSGPESPVQGPR 14 1 A0A669KBI7;Q9UMN6 A0A669KBI7 KMT2B Histone-lysine N-methyltransferase 2B 1 ERPS(0.086)GPES(0.914)PVQGPR 146.1 3.87E-05 18476000 1715.4 1564.6 2292.9 1801.1 1149.2 1382.4 1492.3 1708.2 1762.1 1829.2 TRUE FALSE 1739.420892 1735.428319 1714.029037 1685.585507 1305.740496 1627.54923 1775.456135 1563.077748 1931.357578 1456.408036 1.194322504 1.19158112 1.176887929 1.157358011 0.896548539 1.117509098 1.21906505 1.073241639 1.326110218 1 10.50819889 -12.43499621 1.935997787 8.87E-05 1.143825398 0.151420111 0.105743151 1301547.952 124526.7247 5691247.877 0.027178802 3.67E-13 12.43499621 1.143736722 ERPSSAIYPS(ph)DSFRQSLLGSR ddPTM_K562_Paclitaxel_30min_R1 1 ERPSSAIYPSDSFRQSLLGSR 21 2 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 ERPSSAIYPS(0.947)DS(0.02)FRQS(0.025)LLGS(0.007)R 69.361 0.0094577 0 388.8 436.82 459.47 426.31 395.01 409.92 618.69 494.51 431.73 463.68 TRUE FALSE 394.2443996 484.5134848 343.4711158 398.9683847 448.8170496 482.6135564 736.0831977 452.4982889 473.1995955 369.1817615 1.067886989 1.312398215 0.930357758 1.080682814 1.215707536 1.307251893 1.993823299 1.225678883 1.281752364 1 8.528187472 -7.20441107 3.042073919 1.418946735 1.107985616 0.178331105 0.254618561 0.399207046 7.342924787 0.092034511 0.088993095 6.25E-08 7.20441107 -0.310961119 ERPSSAIYPSDSFRQS(ph)LLGSR ddPTM_K562_Paclitaxel_30min_R1 1 ERPSSAIYPSDSFRQSLLGSR 21 2 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 ERPSSAIYPS(0.13)DS(0.051)FRQS(0.819)LLGSR 108.45 0.0008099 32291000 129.1 176.25 164.64 161.52 51.928 105.24 250.58 366.77 173.17 175.6 TRUE FALSE 130.9077983 195.493571 123.0745958 151.1608301 59.00147275 123.9028364 298.1262469 335.6105992 189.8037522 139.8126236 0.936308861 1.398254077 0.880282428 1.081167253 0.422003902 0.886206361 2.132327105 2.40043131 1.357558047 1 7.127350817 -7.75184813 24.99590925 1.839281731 0.936107871 0.438416213 0.429155844 163.3866952 425805.5833 0.164642131 0.125851206 1.77E-08 7.75184813 -0.903173859 ERQAQAQES(ph)EEEEESR ddPTM_K562_Paclitaxel_30min_R1 2 ERQAQAQESEEEEESR 16 1 H0YLQ7;Q9NVM6 H0YLQ7 DNAJC17 DnaJ homolog subfamily C member 17 1 ERQAQAQES(0.999)EEEEES(0.001)R;ERQAQAQES(0.999)EEEEES(0.001)R 123.58 6.54E-05 14055500 773.66 785.13 945.59 903.01 1014.39 686.8 746.88 1405.19 646.17 1371.29 TRUE FALSE 784.4936269 870.8531485 706.8641096 845.0949803 1152.567092 808.5943368 888.596581 1285.810339 708.2375157 1091.820345 0.718518967 0.797615791 0.647417968 0.774023844 1.055638042 0.740592846 0.813867029 1.177675745 0.648675873 1 10.09251977 -6.54028127 24.6007675 0.903233963 0.725809627 0.24970574 0.147818096 277.1554704 391793.4749 0.041785609 0.053957533 2.88E-07 6.54028127 -0.177424337 ERREEQTDTS(ph)DGESVTHHIR ddPTM_K562_Paclitaxel_30min_R1 1 ERREEQTDTSDGESVTHHIR 20 2 A2AB27;P36915 A2AB27 GNL1 Guanine nucleotide-binding protein-like 1 1 ERREEQT(0.019)DT(0.081)S(0.843)DGES(0.053)VT(0.004)HHIR 49.577 0.023953 10438000 734.95 446.84 916.59 687.61 504.12 547.6 486.08 587.52 513.02 705.62 TRUE FALSE 745.2415675 495.6275023 685.1855183 643.5097722 572.7896788 644.7091713 578.3111425 537.6065088 562.2978632 561.8142567 1.326491022 0.882191038 1.219594395 1.145413746 1.019535678 1.147548614 1.029363594 0.956911475 1.000860794 1 9.133949425 -7.935193039 4.598608008 0.985200041 1.112769784 0.241839854 0.110732212 0.310111018 12.96923115 0.045881791 0.029898992 1.16E-08 7.935193039 0.127569743 ERS(ph)DS(ph)GGSSSEPFDR ddPTM_K562_Paclitaxel_30min_R1 1 ERSDSGGSSSEPFDR 15 1 P48634-2;P48634-3;P48634;P48634-4 P48634-2 PRRC2A Protein PRRC2A 2 ERS(0.972)DS(0.829)GGS(0.19)S(0.007)S(0.002)EPFDR 114.54 0.018891 30842000 3256.1 2742.5 3383.7 2729.5 2443.3 2324.1 2725.6 3390.5 3453.1 4135.9 TRUE FALSE 3301.695446 3041.935425 2529.443086 2554.442087 2776.118825 2736.246503 3242.768371 3102.455862 3784.785684 3293.00131 1.002640186 0.923757733 0.76812696 0.775718515 0.843036053 0.830927851 0.984745546 0.942136237 1.149342295 1 11.68518737 -8.131753998 1.619725091 1.055003383 0.852428267 0.496268885 0.08036739 0.347773902 1.709284406 0.060719381 0.026344463 7.38E-09 8.131753998 -0.202575116 ERS(ph)PALKS(ph)PLQSVVVR ddPTM_K562_Paclitaxel_30min_R1 1 ERSPALKSPLQSVVVR 16 2 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 2 ERS(1)PALKS(0.886)PLQS(0.114)VVVR 152.89 7.43E-07 79682000 2810.7 2621.3 5689.4 3142.4 2282.9 2589.9 2190.3 3595.2 2386.8 3947.5 TRUE FALSE 2850.058472 2907.502399 4253.040604 2940.860529 2593.86963 3049.182401 2605.897991 3289.765319 2616.062805 3142.997333 0.906796338 0.925073136 1.353179832 0.935686613 0.825285342 0.970151126 0.829112377 1.046696822 0.832346492 1 11.61792533 -6.491624334 24.99750652 0.914441229 1.064090616 0.192949481 0.133238393 1064.573529 851453.5918 0.037329057 0.055298804 3.22E-07 6.491624334 0.149649387 ERS(ph)PS(ph)PLRGNVVPS(ph)PLPTRR ddPTM_K562_Paclitaxel_30min_R1 1 ERSPSPLRGNVVPSPLPTRR 20 3 H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9;Q9Y2V2 H3BTK3 CARHSP1 Calcium-regulated heat stable protein 1 3 ERS(1)PS(1)PLRGNVVPS(0.945)PLPT(0.055)RR 49.537 0.028549 603000000 958.47 996.71 1341.8 1063.2 830.9 782.25 634.74 958.13 1071.1 1208.6 TRUE FALSE 971.8915371 1105.534168 1003.045995 995.0111107 944.0826473 920.9710542 755.1786014 876.730876 1173.983941 962.2866566 1.009981309 1.14886158 1.042356753 1.034006971 0.98108255 0.957065182 0.784775094 0.91109117 1.219993993 1 9.910322914 -6.612660483 1.905480675 0.958409681 1.07607273 0.124240891 0.106387223 0.618182991 4.575539484 0.036816259 0.054188105 2.44E-07 6.612660483 0.117663049 ERS(ph)PS(ph)PLRGNVVPSPLPTRR ddPTM_K562_Paclitaxel_30min_R1 1 ERSPSPLRGNVVPSPLPTRR 20 3 H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9;Q9Y2V2 H3BTK3 CARHSP1 Calcium-regulated heat stable protein 1 2 ERS(1)PS(0.999)PLRGNVVPS(0.001)PLPTRR 48.112 0.029694 438430000 711.05 637.35 836.56 728.53 706.65 607.73 744.77 558.45 635.35 784.41 TRUE FALSE 721.0068938 706.9380284 625.3600816 681.8053466 802.9076937 715.5023825 886.0862195 511.0061868 696.3782063 624.5468114 1.154448122 1.131921604 1.001302176 1.091680134 1.285584489 1.145634514 1.418766701 0.818203179 1.115013628 1 9.286665899 -8.28025236 24.9997426 0.974956339 1.167082182 0.341933571 0.125390233 1030.905715 1369917.516 0.068616679 0.033054436 5.25E-09 8.28025236 0.192125843 ERS(ph)YELVR ddPTM_K562_Paclitaxel_30min_R1 2 ERSYELVR 8 1 A0A3B3ISE6;A0A3B3ITA8;A0A3B3ITJ7;A0A3B3ITE7;A0A3B3IT25;A0A3B3IS40;Q9UGL1;Q9UGL1-2 A0A3B3ISE6 KDM5B Lysine-specific demethylase 5B 1 ERS(1)YELVR;ERS(1)YELVR 95.483 0.010638 20017600 2278.4 2293.2 3014.6 2247.7 1952.94 1819.49 1951.77 2153.9 1944.8 2941 TRUE FALSE 2310.304629 2543.579331 2253.526946 2103.542582 2218.963492 2142.151005 2322.108169 1970.912751 2131.60673 2341.622586 0.986625532 1.086246497 0.962378378 0.89832691 0.947617906 0.914814803 0.991666284 0.84168677 0.910311825 1 11.19329285 -5.94996432 6.076965934 0.925655394 1.035371668 0.43148186 0.048489455 0.159477263 13.26372515 0.01225819 0.025829344 1.12E-06 5.94996432 0.109716274 ERSDS(ph)GGSSSEPFDR ddPTM_K562_Paclitaxel_30min_R1 1 ERSDSGGSSSEPFDR 15 1 P48634-2;P48634-3;P48634;P48634-4 P48634-2 PRRC2A Protein PRRC2A 1 ERS(0.009)DS(0.948)GGS(0.014)S(0.014)S(0.014)EPFDR 125.39 0.00068036 56305000 919.39 1097.5 1415.2 1229.5 873.52 1107 1160.1 1216.8 1048.1 1067.9 TRUE FALSE 932.2642966 1217.328762 1057.915257 1150.645373 992.5082128 1303.310907 1380.222919 1113.425245 1148.774688 850.2613938 1.096444344 1.431711201 1.244223558 1.353284274 1.167297751 1.532835568 1.623292471 1.30950935 1.351084145 1 9.731762623 -5.249715326 23.81819291 1.352192432 1.096444047 0.1455715 0.168569724 1702.525461 3458669.424 0.04141583 0.621403256 5.63E-06 5.249715326 -0.255748385 ERSPS(ph)PSFR ddPTM_K562_Paclitaxel_30min_R1 1 ERSPSPSFR 9 1 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 ERS(0.073)PS(0.924)PS(0.003)FR 77.674 0.026568 7599500 316.3 335.96 468.97 543.62 382.3 350.53 380.28 448.19 406.89 405.75 TRUE FALSE 320.7291759 372.6412489 350.5727234 508.7546464 434.3757324 412.6915738 452.4361448 410.113462 445.9736025 323.0579273 0.992791536 1.15348121 1.085169853 1.574809356 1.344575371 1.277453791 1.400479934 1.269473452 1.380475651 1 8.335649066 -6.162457126 17.31954534 1.334739783 1.084704378 0.385301189 0.140326076 3.460209632 601.9857981 0.035735303 0.061897212 6.88E-07 6.162457126 -0.250035406 ERT(ph)ETPS(ph)GS(ph)S(ph)S(ph)GNNR ddPTM_K562_Paclitaxel_30min_R1 1 ERTETPSGSSSGNNR 15 1 C9J3M8;A0A2U3TZK7;Q6ZVT6-2;Q6ZVT6 C9J3M8 C3orf67 Uncharacterized protein C3orf67 5 ERT(0.998)ET(0.199)PS(0.939)GS(0.939)S(0.939)S(0.986)GNNR 62.466 0.025248 3251900 93.385 68.15 119.12 188.06 234.82 158.8 0 0 0 142.93 TRUE FALSE 94.69267812 75.59084747 89.04668274 175.9986733 266.8064595 186.9609503 0 0 0 113.8007875 0.832091589 0.664238351 0.782478616 1.546550574 2.344504509 1.642879231 0 0 0 1 6.830366731 -7.766597572 24.99985078 0.166666467 1.308000061 0.472199234 0.542057355 121.657623 589621.4116 0.249501089 0.173943106 1.71E-08 7.766597572 1.141333595 ERVDDSTGTVIS(ph)DVEEDAGELSR ddPTM_K562_Paclitaxel_30min_R1 6 ERVDDSTGTVISDVEEDAGELSR 23 1 Q9Y2D8-2;Q9Y2D8-3;Q9Y2D8;S4R403 Q9Y2D8-2 SSX2IP Afadin- and alpha-actinin-binding protein 1 ERVDDSTGTVIS(1)DVEEDAGELSR;ERVDDSTGTVIS(1)DVEEDAGELSR;ERVDDSTGTVIS(1)DVEEDAGELSR;ERVDDSTGTVIS(1)DVEEDAGELSR;ERVDDSTGTVIS(1)DVEEDAGELSR;ERVDDSTGTVIS(1)DVEEDAGELSR 178.77 1.04E-21 411070300 6942.01 5618.16 8571.72 7266.91 5552 5442.34 6237.32 7126.39 7026.75 8542.19 TRUE FALSE 7039.219558 6231.569708 6407.683272 6800.842918 6308.276396 6407.462585 7420.818909 6520.958688 7701.700734 6801.286989 1.034983463 0.916233901 0.942128053 0.999934708 0.927512161 0.942095606 1.091090395 0.958783051 1.13238873 1 12.73159205 -7.746989926 24.99574213 1.042130803 0.957930557 0.36457959 0.054891941 247.5121329 428165.1556 0.019677004 0.015171515 1.79E-08 7.746989926 -0.084200246 ERVRGFLT(ph)QTR ddPTM_K562_Paclitaxel_30min_R1 1 ERVRGFLTQTR 11 2 J3KP97;H0YCD6;H0YDP2;H7C0C9 J3KP97;H0YDP2 CCDC18 1 ERVRGFLT(0.5)QT(0.5)R 113.67 0.0096822 6813000 0 63.226 218.49 190.9 60.305 0 0 124.37 0 171.37 TRUE FALSE 0 70.1292285 163.3294972 178.6565284 68.51956197 0 0 113.8039922 0 136.4446999 0 0.513975468 1.197038048 1.309369499 0.50217826 0 0 0.834066785 0 1 7.092172545 -5.288258615 5.269295402 0.593458728 3.79E-12 0.129506083 0.465569562 0.342877825 28.75531581 0.126418023 0.657459914 5.15E-06 5.288258615 -0.593458728 ES(ph)FIQGCTVRNS(ph)FS(ph)RGLSMCGT(ph)LGLK ddPTM_K562_Paclitaxel_30min_R1 1 ESFIQGCTVRNSFSRGLSMCGTLGLK 26 2 P08F94-2;P08F94 P08F94-2 PKHD1 Fibrocystin 4 ES(0.979)FIQGCT(0.026)VRNS(0.681)FS(0.681)RGLS(0.681)MCGT(0.953)LGLK 42.325 0.030713 0 323.19 334.79 465.25 503.56 357.26 312.47 291.75 381 305.33 477.55 TRUE FALSE 327.7156571 371.3435044 347.7918834 471.2639155 405.9248605 367.8821672 347.1080395 348.6316719 334.6583108 380.2250479 0.86189918 0.976641351 0.914700084 1.239434167 1.067591056 0.96753796 0.91290156 0.916908746 0.880158508 1 8.570709764 -7.53101011 4.788662334 0.921942181 1.017637873 0.139480655 0.098093704 0.375540902 23.48487167 0.040137328 0.032174743 2.94E-08 7.53101011 0.095695692 ES(ph)GSEAER ddPTM_K562_Paclitaxel_30min_R1 2 ESGSEAER 8 0 Q8NE01-2;Q8NE01;Q8NE01-3 Q8NE01-2 CNNM3 Metal transporter CNNM3 1 ES(1)GSEAER;ES(0.996)GS(0.004)EAER 98.582 0.014765 3391300 0 507.1 0 0 0 0 0 0 0 0 TRUE FALSE 0 562.4668929 0 0 0 0 0 0 0 0 0 ES(ph)SPSHGLLK ddPTM_K562_Paclitaxel_30min_R1 1 ESSPSHGLLK 10 0 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 1 ES(0.5)S(0.5)PS(0.001)HGLLK 90.697 0.018989 0 5367.2 4023.1 8325.7 5172.5 4256 3819.2 4068.6 6125.2 4801.7 6674.4 TRUE FALSE 5442.357359 4462.355663 6223.774064 4840.759001 4835.739255 4496.481496 4840.59561 5604.826028 5262.92474 5314.153616 1.02412496 0.839711455 1.171169393 0.910918154 0.909973554 0.846133142 0.910887407 1.054697781 0.990359918 1 12.37562422 -8.258730058 24.93326425 1.016896637 0.942948458 0.109401523 0.091796145 530.0788537 4878241.938 0.045880519 0.024992893 5.51E-09 8.258730058 -0.073948179 ES(ph)Y(ph)CQRQGVPMNS(ph)LR ddPTM_K562_Paclitaxel_30min_R1 1 ESYCQRQGVPMNSLR 15 1 B8ZZN6;P63165;B8ZZ67;P63165-2 B8ZZN6 SUMO1 Small ubiquitin-related modifier 1 3 ES(1)Y(1)CQRQGVPMNS(1)LR 77.324 0.012655 78253000 151.56 114.26 206.21 117.31 194.85 192.72 194.16 235.37 261.44 167.79 TRUE FALSE 153.6823076 126.7352932 154.1497351 109.7862617 221.3918688 226.8961861 231.0008464 215.3738494 286.5524801 133.5943059 1.150365703 0.948657896 1.153864561 0.821788481 1.657195397 1.698397133 1.729121948 1.612148421 2.144945312 1 7.061714708 -6.77380975 24.85305044 1.678254782 1.0233252 0.545639227 0.276587868 142.7232213 286741.1748 0.079924396 0.091268172 1.68E-07 6.77380975 -0.654929582 ESAAPAAAPTAEAPPPS(ph)VVTRPEPQALPSPAIR ddPTM_K562_Paclitaxel_30min_R1 2 ESAAPAAAPTAEAPPPSVVTRPEPQALPSPAIR 33 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 1 ESAAPAAAPT(0.049)AEAPPPS(0.391)VVT(0.361)RPEPQALPS(0.198)PAIR;ESAAPAAAPT(0.028)AEAPPPS(0.348)VVT(0.348)RPEPQALPS(0.276)PAIR 69.766 6.93E-05 132201000 2312.39 1810.16 2320.78 1967.52 1737.86 1627.52 2354.28 2515.93 1242.62 2785.83 TRUE FALSE 2344.770594 2007.79939 1734.870386 1841.332073 1974.585954 1916.13782 2800.99234 2302.186043 1361.979203 2218.076317 1.057118989 0.905198516 0.782150899 0.830148205 0.890224533 0.863873712 1.26280251 1.037920123 0.614036223 1 11.11509329 ESAAPAAAPTAEAPPPSVVT(ph)RPEPQALPSPAIR ddPTM_K562_Paclitaxel_30min_R1 1 ESAAPAAAPTAEAPPPSVVTRPEPQALPSPAIR 33 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 1 ESAAPAAAPT(0.081)AEAPPPS(0.317)VVT(0.402)RPEPQALPS(0.2)PAIR 62.57 0.0025096 121390000 872.58 769.82 812.81 832.78 695.98 605.76 794.13 1249.2 504.5 1222.9 TRUE FALSE 884.7988121 853.871551 607.6060628 779.3692182 790.784259 713.1830307 944.8120219 1143.072663 552.9594792 973.6723087 0.908723401 0.87695988 0.624035476 0.800443035 0.812166734 0.732467201 0.970359343 1.173980869 0.567911272 1 9.927292502 -7.768274224 24.99528738 0.942561302 0.789908739 0.146924748 0.158462711 287.9715842 1053110.411 0.063564118 0.043927977 1.71E-08 7.768274224 -0.152652563 ESAAPAAAPTAEAPPPSVVTRPEPQALPS(ph)PAIR ddPTM_K562_Paclitaxel_30min_R1 1 ESAAPAAAPTAEAPPPSVVTRPEPQALPSPAIR 33 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 1 ESAAPAAAPT(0.008)AEAPPPS(0.053)VVT(0.053)RPEPQALPS(0.887)PAIR 63.297 0.00026207 10081000 926.24 737.09 921.17 879.6 715.08 842.81 1021.7 1137.3 507.25 1337.5 TRUE FALSE 939.2102177 817.5679789 688.6092406 823.1863929 812.4860024 992.2705199 1215.562241 1040.679266 555.973629 1064.916766 0.881956457 0.767729465 0.646631984 0.773005383 0.762957283 0.931782231 1.141462207 0.977240006 0.522081769 1 10.05652496 -7.259632302 20.774356 0.927275092 0.760233744 0.179550169 0.156783917 26.21382296 301357.5613 0.054682034 0.051920989 5.50E-08 7.259632302 -0.167041348 ESAS(ph)PTIPNLDLLEAHTK ddPTM_K562_Paclitaxel_30min_R1 2 ESASPTIPNLDLLEAHTK 18 0 O75151 O75151 PHF2 Lysine-specific demethylase PHF2 1 ES(0.24)AS(0.759)PTIPNLDLLEAHTK;ES(0.253)AS(0.746)PT(0.001)IPNLDLLEAHTK 181.88 2.57E-12 46216000 9991.3 8126.5 17015.1 11354.9 8628.6 7349.3 7029.9 11056.2 9682.9 12923.2 TRUE FALSE 10131.20903 9013.778752 12719.42756 10626.64754 9803.961403 8652.595166 8363.786826 10116.9068 10612.98581 10289.44475 0.984621549 0.876021882 1.236162677 1.032771719 0.952817343 0.840919542 0.812851134 0.983231559 1.031443977 1 13.32887751 -6.835816559 4.486346417 0.922789704 1.035899504 0.164422755 0.104252702 0.373305696 14.1724877 0.034863549 0.040546491 1.46E-07 6.835816559 0.1131098 ESDMEHS(ph)PSATEDSLQPATDLLTR ddPTM_K562_Paclitaxel_30min_R1 2 ESDMEHSPSATEDSLQPATDLLTR 24 0 E7ET52;Q8WW38-2;Q8WW38 E7ET52 ZFPM2 Zinc finger protein ZFPM2 1 ES(0.007)DMEHS(0.958)PS(0.035)ATEDSLQPATDLLTR;ES(0.004)DMEHS(0.993)PS(0.003)ATEDSLQPATDLLTR 124.21 4.34E-10 66322000 3356.2 2797 4404.6 3617.4 3209.8 2956.3 3060.9 3803.7 3197 4341.5 TRUE FALSE 3403.197155 3102.385919 3292.604255 3385.396155 3647.029102 3480.558296 3641.689796 3480.551943 3504.086135 3456.699917 0.984522011 0.897499347 0.95252823 0.979372302 1.055060951 1.006902068 1.053516326 1.00690023 1.013708514 1 11.75517965 -6.4636521 3.054114016 1.023696739 0.940181265 0.626680026 0.026879799 0.150269972 2.762677155 0.007676161 0.01157603 3.44E-07 6.4636521 -0.083515473 ESDQTLAALLS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 ESDQTLAALLSPK 13 0 P18583-6;P18583-2;P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;H7C1M2 P18583-6 SON Protein SON 1 ESDQTLAALLS(1)PK;ESDQTLAALLS(1)PK 104.76 0.0045945 13272400 16976.7 14684.2 31506 19761.3 14463.8 13470.8 15310.2 22133.2 9793.6 28189 TRUE FALSE 17214.42618 16287.47061 23551.92064 18493.89867 16434.01443 15859.65724 18215.23053 20252.84651 10734.31904 22444.06633 0.766992306 0.725691609 1.049360677 0.823999466 0.732220899 0.706630296 0.811583349 0.902369749 0.478269797 1 14.45404646 -6.546785457 13.06265502 0.766802664 0.852085202 0.049985628 0.149988785 3.556048542 1937.005528 0.043151475 0.055836115 2.84E-07 6.546785457 0.085282538 ESDSAEGDEAES(ph)PEQQVR ddPTM_K562_Paclitaxel_30min_R1 2 ESDSAEGDEAESPEQQVR 18 0 Q8TEH3;Q8TEH3-7;Q8TEH3-6 Q8TEH3 DENND1A DENN domain-containing protein 1A 1 ESDSAEGDEAES(1)PEQQVR;ESDSAEGDEAES(1)PEQQVR 170.89 1.04E-53 0 1487.15 1404.59 2084.3 1633.84 1689.5 1053.14 1120.23 1471.08 961.76 1929.38 TRUE FALSE 1507.974688 1557.947886 1558.092687 1529.052815 1919.638503 1239.899592 1332.787795 1346.102572 1054.141345 1536.171297 0.98164488 1.014175886 1.014270147 0.995366089 1.249625291 0.807136284 0.867603631 0.876271139 0.686213411 1 10.58512338 -7.3048041 24.98904381 0.840971702 1.043836767 0.501155808 0.101321484 392.5997882 226235.5011 0.034684439 0.030588999 4.96E-08 7.3048041 0.202865066 ESDTKNEVNGTSEDIKSEGDTQS(ph)N ddPTM_K562_Paclitaxel_30min_R1 1 ESDTKNEVNGTSEDIKSEGDTQSN 24 2 O95232 O95232 LUC7L3 Luc7-like protein 3 1 ESDTKNEVNGTSEDIKS(0.001)EGDT(0.009)QS(0.99)N 72.286 0.0028928 0 922.44 600.64 2281.4 1080.4 634.7 543.39 609.15 936.98 540.78 1255.1 TRUE FALSE 935.357006 666.2199064 1705.432354 1011.10798 721.1568856 639.7525869 724.7330325 857.3777006 592.7243353 999.3099311 0.936002913 0.666679962 1.706610033 1.011806196 0.721654877 0.640194365 0.725233494 0.857969759 0.593133638 1 9.964788382 -6.686156685 5.105653528 0.742009973 1.103686114 0.266788963 0.264291321 0.275524976 12.90972443 0.080617564 0.103789311 2.06E-07 6.686156685 0.361676141 ESDVGSHDSTDSQS(ph)DAETAAAAGEVLDLTSR ddPTM_K562_Paclitaxel_30min_R1 2 ESDVGSHDSTDSQSDAETAAAAGEVLDLTSR 31 0 Q92766-4;Q92766-2 Q92766-4 RREB1 Ras-responsive element-binding protein 1 1 ESDVGSHDS(0.001)T(0.012)DS(0.111)QS(0.861)DAET(0.015)AAAAGEVLDLTSR;ESDVGSHDST(0.003)DS(0.217)QS(0.776)DAET(0.004)AAAAGEVLDLTSR 118.97 2.54E-17 13591900 789.2 984.55 1138.83 934.84 861.34 712.96 817.56 1030.35 1015.54 909.3 TRUE FALSE 800.2512349 1092.046499 851.3182816 874.8835466 978.6690906 839.3934455 972.6877421 942.8153363 1113.087155 723.9841609 1.105343567 1.508384517 1.175879705 1.208429126 1.351782461 1.159408577 1.343520749 1.302259617 1.537446832 1 9.499814325 ESEDSETQPFDTHLEAYGPCLS(ph)PPR ddPTM_K562_Paclitaxel_30min_R1 4 ESEDSETQPFDTHLEAYGPCLSPPR 25 0 Q14676;Q14676-3 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 ESEDSETQPFDTHLEAY(0.001)GPCLS(0.999)PPR;ESEDSETQPFDTHLEAYGPCLS(1)PPR;ESEDSETQPFDTHLEAYGPCLS(1)PPR;ESEDSETQPFDTHLEAYGPCLS(1)PPR 168.04 2.36E-26 548557000 5525.69 5421.49 6741.35 6245.94 5364.91 4965.71 4744.27 6015.74 5388.12 7592.9 TRUE FALSE 5603.066708 6013.426613 5039.412817 5845.353364 6095.701571 5846.308946 5644.470466 5504.665338 5905.673001 6045.462812 0.926821797 0.994700786 0.833585943 0.966899234 1.008310159 0.9670573 0.93367053 0.910544901 0.976876905 1 12.56163707 ESEITDEDIDGILER ddPTM_K562_Paclitaxel_30min_R1 1 ESEITDEDIDGILER 15 0 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 0 187.11 4.34E-06 6625200 1656.7 1593.9 1519.2 1572.5 1509.4 1269.9 1003.3 1503.4 1566.1 1829.5 FALSE TRUE 1679.898911 1767.927392 1135.659171 1471.646888 1715.005834 1495.098935 1193.670937 1375.676786 1716.530903 1456.646896 1.153264333 1.213696605 0.779639303 1.010297617 1.177365523 1.026397639 0.819464855 0.944413358 1.178412495 1 10.50843548 -7.530784661 24.97049799 0.972653439 1.060509355 0.066386083 0.139457254 553.8709557 1749358.001 0.055843377 0.043334379 2.95E-08 7.530784661 0.087855916 ESESALMEDRDES(ph)EVS(ph)DEGGSPISSEGQEPR ddPTM_K562_Paclitaxel_30min_R1 1 ESESALMEDRDESEVSDEGGSPISSEGQEPR 31 1 O14976-2;O14976 O14976-2 GAK Cyclin-G-associated kinase 2 ES(0.009)ES(0.015)ALMEDRDES(0.896)EVS(0.883)DEGGS(0.112)PIS(0.059)S(0.026)EGQEPR 52.054 0.0059643 11119000 823.08 493.83 751.93 600.12 615.84 444.3 576.72 770.56 508.53 702.31 TRUE FALSE 834.6056594 547.7480294 562.0959717 561.6309892 699.7278343 523.0903667 686.1496093 705.0961183 557.3765787 559.1788365 1.492555878 0.979557869 1.00521682 1.004385275 1.251348922 0.935461667 1.227066485 1.260949221 0.996776956 1 9.127165949 -5.252358627 24.79806018 1.083334938 1.492556116 0.529253909 0.118255223 900.1856461 2458204.323 0.029621375 0.354199107 5.59E-06 5.252358627 0.409221178 ESHLIELNIENPDDRRR ddPTM_K562_Paclitaxel_30min_R1 2 ESHLIELNIENPDDRRR 17 2 Q9NSI8;A0A2R8Y4K8;Q9NSI8-3;S6FRS6;Q9NSI8-2 Q9NSI8 SAMSN1 SAM domain-containing protein SAMSN-1 0 ; 65.704 0.014647 33520000 3760.8 3781.9 4569.8 4403.3 3707.7 3993.1 3692.7 4626.8 3725.7 5045.6 FALSE TRUE 3813.462803 4194.820632 3416.097471 4120.892046 4212.751512 4701.220219 4393.370548 4233.72446 4083.570132 4017.30395 0.949259217 1.044188013 0.850345783 1.025785476 1.048651425 1.1702426 1.093611686 1.053872078 1.016495187 1 11.9720119 -6.501499301 6.97939753 1.070397764 0.954141043 0.410252142 0.061676629 0.174824643 36.98891886 0.018009455 0.025612202 3.15E-07 6.501499301 -0.116256721 ESIESEIRR ddPTM_K562_Paclitaxel_30min_R1 2 ESIESEIRR 9 1 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 0 ; 193.1 0.00010117 108893000 4079.4 3303.9 4728.7 4720.9 4017.1 3606 3882.7 4364.4 3899.8 4904.6 FALSE TRUE 4136.524186 3664.630975 3534.881201 4418.122604 4564.29703 4245.473469 4619.422056 3993.616978 4274.393215 3905.039828 1.05927836 0.938436261 0.905210025 1.131389896 1.168822146 1.08717802 1.182938526 1.022682778 1.09458377 1 11.93112155 -6.269839912 24.99171472 1.105183623 0.964721019 0.456144423 0.065009647 491.2046867 1461341.118 0.018091492 0.027326955 5.37E-07 6.269839912 -0.140462604 ESIPAKS(ph)PVPGVDPVVSHSPFDPHHR ddPTM_K562_Paclitaxel_30min_R1 2 ESIPAKSPVPGVDPVVSHSPFDPHHR 26 1 O75376-2;O75376;A0A088AWL3;E7EVK1 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 ES(0.089)IPAKS(0.903)PVPGVDPVVS(0.007)HS(0.001)PFDPHHR;ES(0.094)IPAKS(0.906)PVPGVDPVVSHSPFDPHHR 68.916 0.00059646 77074000 6974.1 5108 10684.3 6794.7 5737 4730.3 4703.2 7129.3 6144.1 8770.1 TRUE FALSE 7071.758917 5665.708714 7986.916323 6358.918354 6518.476528 5569.152288 5595.607648 6523.621465 6734.268258 6982.748806 1.012747145 0.811386586 1.143806908 0.910661192 0.933511531 0.797558733 0.801347407 0.934248338 0.964415081 1 12.76957936 -6.497661052 24.87663686 0.894116809 0.980806379 0.127456967 0.096714868 1423.817558 1404561.419 0.027345135 0.040359763 3.18E-07 6.497661052 0.08668957 ESISPQPADS(ph)ACSSPAPSTGKVEAALNENTCR ddPTM_K562_Paclitaxel_30min_R1 1 ESISPQPADSACSSPAPSTGKVEAALNENTCR 32 1 H0Y4F4;F8W6D9;Q9GZR1-2;Q9GZR1 H0Y4F4 SENP6 Sentrin-specific protease 6 1 ES(0.016)IS(0.289)PQPADS(0.553)ACS(0.123)S(0.017)PAPS(0.001)TGKVEAALNENTCR 140.66 1.55E-30 19447000 863.04 997.48 1910.1 1300.2 794.21 786.31 704.48 1058 972.4 1382.6 TRUE FALSE 875.1252227 1106.38824 1427.871631 1216.810991 902.3948481 925.7510382 838.1514024 968.1162962 1065.803365 1100.825361 0.794971894 1.005053371 1.297091875 1.105362426 0.819743876 0.840960856 0.761384532 0.879445851 0.968185693 1 10.1043699 -6.760674477 24.99993639 0.864547672 1.064970301 0.284289019 0.132105126 25.16908512 822600.3307 0.042320763 0.051457523 1.74E-07 6.760674477 0.200422629 ESISPQPADSACS(ph)SPAPSTGKVEAALNENTCR ddPTM_K562_Paclitaxel_30min_R1 1 ESISPQPADSACSSPAPSTGKVEAALNENTCR 32 1 H0Y4F4;F8W6D9;Q9GZR1-2;Q9GZR1 H0Y4F4 SENP6 Sentrin-specific protease 6 1 ES(0.001)IS(0.012)PQPADS(0.223)ACS(0.606)S(0.141)PAPS(0.013)T(0.005)GKVEAALNENTCR 114.03 4.67E-17 20045000 1299.6 1085 2224.8 1438.5 1101.8 972.14 1044.7 1271.5 1052.1 1768.7 TRUE FALSE 1317.79841 1203.463969 1663.121724 1346.241048 1251.883814 1144.535379 1242.926371 1163.478139 1153.158906 1408.237969 0.935778213 0.854588497 1.180994804 0.955975537 0.88897178 0.812742878 0.882611035 0.826194268 0.818866506 1 10.45967543 -6.76779348 3.738727227 0.858321961 0.989372741 0.259002675 0.091523844 0.285573641 8.63123057 0.028835328 0.035388773 1.71E-07 6.76779348 0.13105078 ESLCDS(ph)PHQNLSR ddPTM_K562_Paclitaxel_30min_R1 3 ESLCDSPHQNLSR 13 0 C9J5L1;E7EW00;H0Y8D9;E7ET15;O15042-2;O15042;U3KPT1;C9JDJ7 C9J5L1;C9JDJ7 U2SURP U2 snRNP-associated SURP motif-containing protein 1 ES(0.113)LCDS(0.881)PHQNLS(0.006)R;ES(0.16)LCDS(0.837)PHQNLS(0.002)R;ES(0.029)LCDS(0.971)PHQNLSR 147.51 0.00013245 42413000 3557.56 3685.14 6043.2 4052.8 3704.68 4563.8 3492.59 4802.7 3329.35 5055.6 TRUE FALSE 3607.376816 4087.496048 4517.519419 3792.871548 4209.320137 5373.125851 4155.29072 4394.680657 3649.148943 4025.265945 0.896183473 1.015459874 1.12229092 0.942266076 1.045724728 1.334849902 1.032302158 1.091773989 0.906560956 1 11.97486839 -5.342506755 3.128829633 1.067178214 0.884201654 0.160160334 0.111000653 0.529263881 8.271789822 0.02898945 0.21095012 4.54E-06 5.342506755 -0.18297656 ESLCDS(ph)PHQNLSRPLLENK ddPTM_K562_Paclitaxel_30min_R1 1 ESLCDSPHQNLSRPLLENK 19 1 C9J5L1;E7EW00;H0Y8D9;E7ET15;O15042-2;O15042;U3KPT1;C9JDJ7 C9J5L1;C9JDJ7 U2SURP U2 snRNP-associated SURP motif-containing protein 1 ES(0.002)LCDS(0.998)PHQNLSRPLLENK 73.928 0.0087704 298450000 1026.1 1027.4 1852 1343.1 1247.6 1553.4 1210 1709 682.58 2216.4 TRUE FALSE 1040.468566 1139.575006 1384.439695 1256.959577 1417.544242 1828.873679 1439.591183 1563.809783 748.1448588 1764.696463 0.589602001 0.645762617 0.784520014 0.712280896 0.803279358 1.036367283 0.815772691 0.886163607 0.423951016 1 10.78520434 -5.657554085 1.060548495 0.823430242 0.541878652 0.197404997 0.158197267 1.685790686 2.430964194 0.05324435 0.464730185 2.20E-06 5.657554085 -0.281551591 ESLLVSVQR ddPTM_K562_Paclitaxel_30min_R1 2 ESLLVSVQR 9 0 J3QRZ1;A6NIZ0;Q9GZM8-3;Q9GZM8;Q9GZM8-2 J3QRZ1 NDEL1 Nuclear distribution protein nudE-like 1 0 ; 128.12 0.0021738 10648500 13325.2 14172.1 14327.2 14777.2 13956.2 13723.5 13699.2 15303.7 12839.8 16004.4 FALSE TRUE 13511.79391 15719.4578 10710.12116 13829.45653 15857.27072 16157.17004 16298.55169 14003.55516 14073.12016 12742.69449 1.060356106 1.233605484 0.840491088 1.085285105 1.244420537 1.267955537 1.279050651 1.098947728 1.104406934 1 13.63738275 -4.954164175 14.07264297 1.134489184 0.733286539 0.021875513 0.130281093 1841528.628 17729063.16 0.034360497 18908124.14 1.11E-05 4.954164175 -0.401202645 ESLPPAAEPS(ph)PVSK ddPTM_K562_Paclitaxel_30min_R1 2 ESLPPAAEPSPVSK 14 0 Q9NWT1 Q9NWT1 PAK1IP1 p21-activated protein kinase-interacting protein 1 1 ESLPPAAEPS(0.541)PVS(0.459)K;ESLPPAAEPS(0.999)PVS(0.001)K 179.55 3.21E-06 28073000 7948.8 7418.1 14250.6 9607.1 7351.2 6490.6 6221.4 10095.5 4296.5 11942.3 TRUE FALSE 8060.107724 8228.033244 10652.85978 8990.943606 8352.557897 7641.616777 7401.878172 9237.824261 4709.198022 9508.452705 0.847678163 0.86533882 1.120356814 0.945573784 0.878435026 0.803665645 0.778452436 0.97153812 0.495264389 1 13.21499488 -7.000873119 2.864787046 0.806488837 0.951011798 0.161339172 0.144622915 0.479835685 8.004037509 0.048184204 0.052343621 9.98E-08 7.000873119 0.144522961 ESLPPAAEPS(ph)PVSKEQSK ddPTM_K562_Paclitaxel_30min_R1 2 ESLPPAAEPSPVSKEQSK 18 1 Q9NWT1 Q9NWT1 PAK1IP1 p21-activated protein kinase-interacting protein 1 1 ESLPPAAEPS(1)PVSKEQSK;ESLPPAAEPS(0.979)PVS(0.005)KEQS(0.016)K 125.03 3.58E-06 29771000 4853.5 3943.9 11007.5 5743.9 3521 2527.9 3158.3 5755.1 4188.3 6907.9 TRUE FALSE 4921.463974 4374.508339 8228.520486 5375.511963 4000.619811 2976.187572 3757.570938 5266.168333 4590.604929 5500.066188 0.894800863 0.795355581 1.49607663 0.97735405 0.727376667 0.541118501 0.683186494 0.957473629 0.834645397 1 12.42523326 -6.642212594 5.254813777 0.771880126 1.065479217 0.255744443 0.210362894 0.283747078 11.90028537 0.065922927 0.085498676 2.28E-07 6.642212594 0.29359909 ESLSTHTS(ph)PS(ph)QSPNSVHGSR ddPTM_K562_Paclitaxel_30min_R1 1 ESLSTHTSPSQSPNSVHGSR 20 0 Q9H1K0 Q9H1K0 RBSN Rabenosyn-5 2 ES(0.001)LS(0.002)T(0.002)HT(0.179)S(0.815)PS(0.986)QS(0.013)PNSVHGSR 73.11 0.0064905 8063700 641.27 921.47 1177.9 862.69 853.37 761.17 603.35 825.36 806.11 861.32 TRUE FALSE 650.2497585 1022.079211 880.5245769 807.3609247 969.6134417 896.1528121 717.8325128 755.2405163 883.5404673 685.7825112 0.948186557 1.490383896 1.283970592 1.177284214 1.413878928 1.306759501 1.046734936 1.101282847 1.288368328 1 9.421607303 -7.751253026 24.94545792 1.117536763 1.283041325 0.207741805 0.152400968 309.2461538 757316.9087 0.056507412 0.043256507 1.77E-08 7.751253026 0.165504562 ESLSTHTS(ph)PSQSPNSVHGSR ddPTM_K562_Paclitaxel_30min_R1 1 ESLSTHTSPSQSPNSVHGSR 20 0 Q9H1K0 Q9H1K0 RBSN Rabenosyn-5 1 ESLSTHT(0.17)S(0.658)PS(0.17)QS(0.001)PNSVHGSR 84.436 0.001798 9812900 696.49 742.62 862.15 888.01 718.49 627.79 618.88 954.99 781.44 922.96 TRUE FALSE 706.2430089 823.701763 644.4895696 831.0570132 816.3605021 739.1197419 736.3092492 873.8576386 856.5008036 734.8602454 0.96105758 1.1208958 0.877023317 1.130904847 1.110905791 1.005796335 1.001971809 1.189148065 1.165528832 1 9.521326096 -6.607627873 0.613996146 1.100128787 0.995210961 0.111568337 0.09049765 2.4464415 1.826005167 0.062087087 0.14735972 2.47E-07 6.607627873 -0.104917825 ESNLQLTDFS(ph)PSR ddPTM_K562_Paclitaxel_30min_R1 1 ESNLQLTDFSPSR 13 0 Q5BKX5-3;Q5BKX5 Q5BKX5-3 C19orf54 UPF0692 protein C19orf54 1 ESNLQLT(0.003)DFS(0.919)PS(0.078)R 80.545 0.027851 0 1187 844.69 1431.3 929.4 900.14 728.96 932.56 1141.2 834.33 1451.9 TRUE FALSE 1203.621662 936.9161108 1069.950613 869.7924438 1022.754307 858.2308209 1109.508392 1044.247937 914.4711244 1156.001983 1.041193423 0.810479674 0.925561226 0.752414318 0.884734042 0.742412931 0.959780699 0.903327116 0.791063629 1 10.17492816 -10.54289992 11.71938348 0.999999997 0.865047515 0.160654016 0.090384344 0 0 0.0827312 0.020065263 2.86E-11 10.54289992 -0.134952482 ESNYFGLS(ph)PEER ddPTM_K562_Paclitaxel_30min_R1 4 ESNYFGLSPEER 12 0 Q01804-5;Q01804-3;Q01804 Q01804-5 OTUD4 OTU domain-containing protein 4 1 ESNYFGLS(1)PEER;ESNYFGLS(1)PEER;ESNYFGLS(1)PEER;ESNYFGLS(1)PEER 154.13 0.0012976 98194000 5525.9 4899.3 6692.7 5822.8 4816.9 4691.8 4752.9 5637.5 4147.39 6205.9 TRUE FALSE 5603.279649 5434.222142 5003.045111 5449.35167 5473.043331 5523.824854 5654.737963 5158.559187 4545.765341 4941.134174 1.134006779 1.099792467 1.012529702 1.102854421 1.107649203 1.117926504 1.144421051 1.044003058 0.919984194 1 12.27062652 -8.558657925 5.102699574 0.962890604 1.099790338 0.689732442 0.0380536 0.111265896 7.197217719 0.027616475 0.01020816 2.76E-09 8.558657925 0.136899733 ESNYFGLS(ph)PEERR ddPTM_K562_Paclitaxel_30min_R1 2 ESNYFGLSPEERR 13 1 Q01804-5;Q01804-3;Q01804 Q01804-5 OTUD4 OTU domain-containing protein 4 1 ESNYFGLS(1)PEERR;ESNYFGLS(1)PEERR 112.67 0.0023877 34595000 5208.2 5233.4 6623.5 6708.1 5223 4630.8 4864.8 5685.4 4546.4 5225.5 TRUE FALSE 5281.130869 5804.80031 4951.315507 6277.87249 5934.461026 5452.00736 5787.870404 5202.389783 4983.102034 4160.540232 1.269337772 1.395203504 1.190065528 1.508908012 1.426367898 1.310408518 1.391134344 1.250412084 1.197705528 1 12.02255515 -8.983891914 1.240883911 1.002699876 1.359125637 0.629927617 0.084440923 0.301841134 1.047932652 0.079616052 0.024816611 1.04E-09 8.983891914 0.356425761 ESPFSTS(ph)ASPLLSGSQHFDVPPR ddPTM_K562_Paclitaxel_30min_R1 1 ESPFSTSASPLLSGSQHFDVPPR 23 0 O14980 O14980 XPO1 Exportin-1 1 ES(0.004)PFS(0.03)T(0.34)S(0.42)AS(0.205)PLLSGSQHFDVPPR 70.501 0.0021991 17467000 639.24 657.51 819.07 746.1 494.31 642.23 779.32 988.33 412.62 1025.1 TRUE FALSE 648.1913322 729.2991654 612.2856484 698.2484854 561.6433907 756.1204731 927.1919017 904.3651975 452.2539946 816.1840573 0.794172989 0.893547428 0.750180848 0.855503706 0.688133253 0.926409266 1.136008347 1.108040753 0.554107852 1 9.67275072 -7.503539549 23.9460325 0.968923498 0.802919429 0.178980585 0.157264424 729.2386418 902955.0291 0.055574564 0.048227064 3.14E-08 7.503539549 -0.166004069 ESPFSTSAS(ph)PLLSGSQHFDVPPR ddPTM_K562_Paclitaxel_30min_R1 1 ESPFSTSASPLLSGSQHFDVPPR 23 0 O14980 O14980 XPO1 Exportin-1 1 ESPFST(0.001)S(0.003)AS(0.996)PLLSGSQHFDVPPR 160.95 1.26E-18 17068000 963.08 901.37 1136.8 976.7 943.47 998.12 1007.2 1333.5 875.69 1228.3 TRUE FALSE 976.5660914 999.7846248 849.8007802 914.0588335 1071.986587 1175.122568 1198.310942 1220.210852 959.8039372 977.9717858 0.998562643 1.02230416 0.868942021 0.934647448 1.096132427 1.201591482 1.225302161 1.247695352 0.981422932 1 9.933649034 -6.880661719 4.188782199 1.152235409 0.954942224 0.444555835 0.0915937 0.1866085 5.876450621 0.029293567 0.033715889 1.32E-07 6.880661719 -0.197293185 ESPRPLQLPGAEGPAIS(ph)DGEEGGGEPGAGGGAAGAAGAGR ddPTM_K562_Paclitaxel_30min_R1 5 ESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGR 40 1 Q6PKG0;A0A0B4J210 Q6PKG0 LARP1 La-related protein 1 1 ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGR 114.77 6.80E-25 923320000 2309.11 1842.244 2579.28 2438.866 2272.71 1596.54 1897.24 2134.69 1582.63 2973.61 TRUE FALSE 2341.444664 2043.38643 1928.108864 2282.448051 2582.291579 1879.663952 2257.231386 1953.33476 1734.648683 2367.58665 0.988958383 0.863067221 0.814377317 0.964039923 1.090685141 0.79391559 0.953389134 0.825032005 0.732665342 1 11.20920151 -8.271794438 23.79139392 0.834136488 0.92043782 0.083882638 0.102520356 823.0845751 1891069.44 0.054836296 0.026845211 5.35E-09 8.271794438 0.086301331 ESPRPLQLPGAEGPAIS(ph)DGEEGGGEPGAGGGAAGAAGAGRR ddPTM_K562_Paclitaxel_30min_R1 4 ESPRPLQLPGAEGPAISDGEEGGGEPGAGGGAAGAAGAGRR 41 2 Q6PKG0;A0A0B4J210 Q6PKG0 LARP1 La-related protein 1 1 ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGRR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGRR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGRR;ESPRPLQLPGAEGPAIS(1)DGEEGGGEPGAGGGAAGAAGAGRR 93.191 1.18E-17 3797900000 1386.88 1361.46 2101.09 1856.37 1385.57 1157.37 1322.52 1564.12 1925.56 1581.93 TRUE FALSE 1406.300599 1510.108807 1570.643844 1737.310737 1574.308092 1362.613319 1573.461266 1431.238243 2110.518642 1259.531798 1.116526476 1.198944568 1.247006107 1.37933059 1.249915322 1.081841143 1.249242988 1.136325614 1.675637444 1 10.29867183 ESQLAHIKDEPPPLS(ph)PAPLT(ph)PATPSSLDPFFSR ddPTM_K562_Paclitaxel_30min_R1 1 ESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSR 33 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 2 ES(0.005)QLAHIKDEPPPLS(0.952)PAPLT(0.873)PAT(0.084)PS(0.03)S(0.029)LDPFFS(0.026)R 43.921 0.0161 6232400 757.54 755.91 1035 947.73 862.6 631.33 687.48 692.92 610.17 940.84 TRUE FALSE 768.1478972 838.4428101 773.7014493 886.9468397 980.1007239 743.2875112 817.9257411 634.0521209 668.7795548 749.0962916 1.025432786 1.119272408 1.032846455 1.184022468 1.308377488 0.992245616 1.091883314 0.84642272 0.892781826 1 9.54900737 -8.058175336 2.285115314 0.903340909 1.121373671 0.458560208 0.094278784 0.273314689 2.792326323 0.055864068 0.028751635 8.75E-09 8.058175336 0.218032762 ESQLAHIKDEPPPLS(ph)PAPLTPATPSSLDPFFSR ddPTM_K562_Paclitaxel_30min_R1 1 ESQLAHIKDEPPPLSPAPLTPATPSSLDPFFSR 33 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 ES(0.003)QLAHIKDEPPPLS(0.934)PAPLT(0.046)PAT(0.009)PS(0.003)S(0.003)LDPFFS(0.002)R 44.955 0.012909 46912000 2096 2159 3937.3 2549 2003.9 1756.1 1742.7 2801.1 1520.3 3594.2 TRUE FALSE 2125.350467 2394.726921 2943.279919 2385.518549 2276.865106 2067.519678 2073.368227 2563.129071 1666.331608 2861.700067 0.742688058 0.836819675 1.028507478 0.833601878 0.795633733 0.722479516 0.724523248 0.895666566 0.582287301 1 11.48265676 -6.695440507 3.789308152 0.774435186 0.874351558 0.077185503 0.122882156 0.493152132 14.10463849 0.036587244 0.047007064 2.02E-07 6.695440507 0.099916372 ESQMTPSHGGS(ph)PVGPPQLPIMSSLR ddPTM_K562_Paclitaxel_30min_R1 3 ESQMTPSHGGSPVGPPQLPIMSSLR 25 0 A0A5F9ZH11;P55201-3;P55201;P55201-2 A0A5F9ZH11 BRPF1 Peregrin 1 ESQMT(0.001)PS(0.002)HGGS(0.994)PVGPPQLPIMS(0.001)S(0.003)LR;ESQMTPS(0.001)HGGS(0.998)PVGPPQLPIMSSLR;ESQMT(0.001)PS(0.008)HGGS(0.991)PVGPPQLPIMSSLR 80.632 0.00013914 78544000 3680.99 3921.2 4676.2 4387.48 3533.59 3393.86 3582.29 4703.25 3911.27 5075.7 TRUE FALSE 3732.535217 4349.329877 3495.635475 4106.08667 4014.924782 3995.713419 4262.010827 4303.679556 4286.96496 4041.269554 0.923604617 1.076228601 0.864984488 1.016038801 0.993481065 0.988727271 1.054621764 1.064932566 1.060796589 1 11.98059287 -7.705988893 4.385285269 1.050831161 0.978031876 0.268404919 0.05477511 0.272725913 10.71766546 0.021085472 0.015595893 1.97E-08 7.705988893 -0.072799285 ESQNTAEIISPPSPDRPPHS(ph)QTSGSCYYHVISK ddPTM_K562_Paclitaxel_30min_R1 2 ESQNTAEIISPPSPDRPPHSQTSGSCYYHVISK 33 1 Q03164-2;Q03164;Q03164-3 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 ES(0.001)QNT(0.001)AEIIS(0.005)PPS(0.1)PDRPPHS(0.308)QT(0.12)S(0.12)GS(0.12)CY(0.109)Y(0.109)HVIS(0.005)K;ESQNTAEIISPPS(0.012)PDRPPHS(0.216)QT(0.216)S(0.216)GS(0.216)CY(0.063)Y(0.063)HVISK 69.054 6.56E-05 82133000 3456.13 3048.36 5153 3898.2 2764.9 2968.82 2933.94 4619.8 3541.1 5108.2 TRUE FALSE 3504.526483 3381.190254 3852.061419 3648.1869 3141.52619 3495.298543 3490.639799 4227.319154 3881.238477 4067.146036 0.861667236 0.83134223 0.947116574 0.896989404 0.77241539 0.859398338 0.85825288 1.03938219 0.954290415 1 11.98980108 -8.251089492 24.59344197 0.997627226 0.861107996 0.651135237 0.045908503 347.203478 825028.8906 0.022842925 0.012998059 5.61E-09 8.251089492 -0.13651923 ESQRGMGY(ph)MPKRGLEVNK ddPTM_K562_Paclitaxel_30min_R1 1 ESQRGMGYMPKRGLEVNK 18 3 H3BRY3;P31146 H3BRY3 CORO1A Coronin;Coronin-1A 1 ES(0.167)QRGMGY(0.833)MPKRGLEVNK 44.567 0.027197 12403000 917.16 575.46 1258.9 988.66 813.62 748.61 835.48 570.16 1010.8 744.93 TRUE FALSE 930.0030697 638.2906689 941.0751251 925.2517727 924.4488187 881.3654725 994.0079685 521.7213492 1107.891856 593.1128571 1.568003557 1.076170684 1.586671261 1.559992776 1.55863898 1.485999607 1.675917082 0.879632507 1.867927567 1 9.212162836 -11.28683567 3.353605645 0.998211379 1.458820145 0.211238782 0.273053888 142561527.9 202856851.5 2669440.839 0.067832905 5.17E-12 11.28683567 0.460608766 ESRS(ph)PQQSAALPR ddPTM_K562_Paclitaxel_30min_R1 1 ESRSPQQSAALPR 13 1 A0A0A6YYG7;Q6IBW4-2;Q6IBW4;Q6IBW4-4;E5RJN3 A0A0A6YYG7 NCAPH2 Condensin-2 complex subunit H2 1 ES(0.01)RS(0.99)PQQSAALPR 130.66 0.00027159 58984000 719.13 699.9 954.73 725.87 580.52 499.37 681.69 753.67 861.36 901.99 TRUE FALSE 729.2000387 776.3174489 713.6966035 679.3159471 659.5966523 587.926258 811.0371188 689.6410292 944.0974767 718.1639429 1.015367098 1.080975252 0.993779499 0.945906508 0.918448578 0.818651874 1.129320299 0.960283562 1.314598827 1 9.488169411 -8.725751525 24.9985381 1.157300063 0.982509262 0.2979716 0.107111498 182.5726731 127888.384 0.071140035 0.026886262 1.88E-09 8.725751525 -0.1747908 ESS(ph)PLYS(ph)PTFSDSTSAVK ddPTM_K562_Paclitaxel_30min_R1 1 ESSPLYSPTFSDSTSAVK 18 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 ES(0.124)S(0.876)PLY(0.012)S(0.808)PT(0.134)FS(0.046)DSTSAVK 106.87 0.0052524 28266000 3575.7 2684.2 5502.9 3750.8 3650.6 3335.7 2466.6 3514 2532.9 3868.5 TRUE FALSE 3625.770832 2977.270033 4113.624836 3510.240476 4147.873525 3927.239559 2934.624473 3215.463766 2776.196362 3080.097577 1.177161029 0.966615492 1.335550168 1.139652361 1.34666952 1.275037385 0.952769969 1.043948669 0.9013339 1 11.58876034 -7.768361516 24.99965683 0.978175476 1.205024795 0.528940703 0.107351449 141.0358588 509352.5726 0.045588251 0.031495489 1.70E-08 7.768361516 0.22684932 ESS(ph)PLYSPTFSDSTSAVK ddPTM_K562_Paclitaxel_30min_R1 2 ESSPLYSPTFSDSTSAVK 18 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 ES(0.029)S(0.97)PLYSPTFSDSTSAVK;ES(0.008)S(0.992)PLYSPTFSDSTSAVK 226.7 5.14E-33 176718000 3573.5 2997.7 7075.1 4712.6 3142.6 2954.74 2494.48 4364.2 2497.79 5109 TRUE FALSE 3623.540025 3324.999024 5288.903501 4410.354929 3570.675325 3478.721652 2967.794558 3993.43397 2737.71389 4067.782996 0.890789904 0.817398329 1.300193129 1.084215882 0.877793955 0.855188602 0.729585271 0.98172247 0.673023584 1 11.990027 -6.873092552 5.415407363 0.842424248 1.027483929 0.235584352 0.150505789 0.312200389 13.64110316 0.048366908 0.055309069 1.34E-07 6.873092552 0.185059682 ESS(ph)SSASRLLRRR ddPTM_K562_Paclitaxel_30min_R1 1 ESSSSASRLLRRR 13 3 A0A0A0MRA3;A0A0A0MTS7;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13;Q8WZ42-12 A0A0A0MRA3 TTN Titin 1 ES(0.091)S(0.454)S(0.454)S(0.002)AS(0.001)RLLRRR 49.081 0.0289 1436500 482.16 397.3 630.93 441.45 374.46 428.96 139.52 311.07 393.61 284.8 TRUE FALSE 488.9117276 440.6785576 471.6439183 413.1373729 425.4677917 505.0300331 165.9931917 284.6426619 431.4179992 226.7576037 2.156098493 1.943390433 2.079947533 1.821933934 1.876311025 2.227180147 0.73202922 1.255272843 1.902551413 1 7.825007118 -7.74763814 24.99989148 1.243736022 2.001644037 0.630331283 0.297938725 158.4553212 287029.9433 0.114507697 0.088222174 1.79E-08 7.74763814 0.757908016 ESSANNS(ph)VSPSESLR ddPTM_K562_Paclitaxel_30min_R1 1 ESSANNSVSPSESLR 15 0 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 ESSANNS(0.8)VS(0.2)PSESLR 312.38 1.05E-222 101030000 1491.9 1022.9 1655.5 1514.2 1239.2 1165.3 1400.2 1473.2 1149.7 1491.7 TRUE FALSE 1512.791203 1134.583681 1237.54855 1417.085989 1408.00002 1371.949593 1665.88064 1348.042465 1260.133822 1187.690721 1.273724864 0.955285464 1.041978798 1.193143942 1.185493828 1.155140449 1.402621584 1.135011363 1.06099492 1 10.21394349 -4.931198794 20.32553341 1.139159125 4.641690156 0.111989482 0.11978096 991.8576108 305797.2057 0.030311685 6817.65452 1.17E-05 4.931198794 3.502531031 ESSANNSVS(ph)PSESLR ddPTM_K562_Paclitaxel_30min_R1 3 ESSANNSVSPSESLR 15 0 H0YKH0;H0YLW9;H0YLI3;H0YNT2;H0YKT5;H0YKN8;H0YL70;Q04726-2;Q04726-7;Q04726-3;Q04726-6;Q04726-5;Q04726-4;Q04726 H0YKH0 TLE3 Transducin-like enhancer protein 3 1 ESSANNS(0.008)VS(0.984)PS(0.008)ESLR;ESSANNS(0.002)VS(0.989)PS(0.009)ESLR;ESSANNS(0.002)VS(0.988)PS(0.01)ESLR 257.46 2.47E-73 468467000 4598.4 5124.4 6779.2 5467.2 4152.5 4908.5 4366.4 5473.7 4781.8 5851 TRUE FALSE 4662.791787 5683.899322 5067.707116 5116.558262 4718.140802 5778.953556 5194.901606 5008.675019 5241.113256 4658.562988 1.000907748 1.220097128 1.087826252 1.098312564 1.012788882 1.240501324 1.115129627 1.075154513 1.125049349 1 12.18566928 -11.51404982 2.68652296 0.994523335 1.111091543 0.166492462 0.072553542 48866760.99 50106844.51 1969679.056 0.01741269 3.06E-12 11.51404982 0.116568208 ESSHNSS(ph)FELIGSTIPSYQPCNR ddPTM_K562_Paclitaxel_30min_R1 2 ESSHNSSFELIGSTIPSYQPCNR 23 0 E7ESG2;Q9HAW4-2;Q9HAW4-3;Q9HAW4 E7ESG2 CLSPN Claspin 1 ES(0.009)S(0.009)HNS(0.193)S(0.789)FELIGSTIPSYQPCNR;ES(0.012)S(0.066)HNS(0.215)S(0.707)FELIGSTIPSYQPCNR 128.75 1.08E-08 298250000 3606.7 3370.8 4488.5 4319.4 3363.7 3836.4 3067.1 4318.6 3580.5 4140.6 TRUE FALSE 3657.204928 3738.835343 3355.322662 4042.373017 3821.892888 4516.731674 3649.066214 3951.707974 3924.423023 3296.743447 1.109338651 1.134099575 1.017768812 1.226171548 1.15929339 1.370058589 1.106869938 1.198670154 1.190393819 1 11.68682591 -6.275955685 24.82949014 1.19121935 1.091772063 0.161814323 0.092486187 1118.129516 1912506.943 0.024909647 0.037138765 5.30E-07 6.275955685 -0.099447287 ESSIIAPAPAEDVDT(ph)PPR ddPTM_K562_Paclitaxel_30min_R1 4 ESSIIAPAPAEDVDTPPR 18 0 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 1 ESSIIAPAPAEDVDT(1)PPR;ESSIIAPAPAEDVDT(1)PPR;ESSIIAPAPAEDVDT(1)PPR;ESS(0.001)IIAPAPAEDVDT(0.999)PPR 251.74 5.90E-66 306369000 13353 13681 17636.2 14662.9 13343.9 12135.8 13778.4 17232.3 10607.1 18522 TRUE FALSE 13539.9832 15174.73785 13183.72319 13722.48722 15161.56509 14287.91373 16392.77947 15768.30855 11625.95935 14747.20623 0.918138865 1.028990685 0.893981069 0.930514364 1.028097448 0.968855627 1.111585423 1.069240391 0.788349954 1 13.84815405 -6.754843137 24.95937731 1.002403399 0.945560474 0.073706412 0.086369878 410.0861723 1551706.867 0.025810773 0.032531163 1.76E-07 6.754843137 -0.056842925 ESSPT(ph)SPVAETEGTIMEESSR ddPTM_K562_Paclitaxel_30min_R1 1 ESSPTSPVAETEGTIMEESSR 21 0 Q8IWV8-4;Q8IWV8 Q8IWV8-4 UBR2 E3 ubiquitin-protein ligase UBR2 1 ESS(0.009)PT(0.923)S(0.068)PVAETEGTIMEESSR 214.59 1.15E-165 0 717.05 822.72 811.66 898.93 878.48 638.97 850.12 684.85 467.87 1061.1 TRUE FALSE 727.0909123 912.5473519 606.7463945 841.2766533 998.1438488 752.2823579 1011.425832 626.6677178 512.811004 844.8472375 0.860618204 1.080132965 0.718172905 0.995773692 1.181448911 0.890435956 1.197170077 0.741752698 0.606986661 1 9.722546691 -8.3060549 24.87860592 0.755777061 0.986047077 0.243504041 0.164411726 558.0465871 311176.2046 0.086977941 0.041783156 4.94E-09 8.3060549 0.230270016 ESSPTS(ph)PVAETEGTIMEESSR ddPTM_K562_Paclitaxel_30min_R1 2 ESSPTSPVAETEGTIMEESSR 21 0 Q8IWV8-4;Q8IWV8 Q8IWV8-4 UBR2 E3 ubiquitin-protein ligase UBR2 1 ESSPT(0.027)S(0.972)PVAETEGTIMEESSR;ESS(0.004)PT(0.052)S(0.944)PVAETEGTIMEESSR 221.81 2.19E-190 10670000 1498.36 1152.52 1785.14 1604.53 1314.13 1439.25 1515.57 1362.43 979.84 1767.05 TRUE FALSE 1519.341663 1278.356031 1334.459329 1501.622627 1493.136754 1694.480779 1803.141496 1246.683067 1073.95801 1406.92424 1.079902968 0.908617532 0.948494091 1.067308804 1.061277297 1.204386655 1.281619468 0.88610533 0.763337484 1 10.45832893 -8.486194886 24.51715726 0.862686203 1.071879669 0.374809346 0.115043615 473.9957427 316789.9528 0.068634484 0.03295207 3.26E-09 8.486194886 0.209193466 ESSS(ph)PLSSNQSEPGSIALNSYHSR ddPTM_K562_Paclitaxel_30min_R1 1 ESSSPLSSNQSEPGSIALNSYHSR 24 0 A0A2R8YFL3;A0A2R8Y7R1;A0A2R8Y4U4;P15260 A0A2R8YFL3 IFNGR1 Interferon gamma receptor 1 1 ES(0.178)S(0.178)S(0.639)PLS(0.004)S(0.001)NQSEPGSIALNSYHSR 92.449 0.00011201 19641000 564.76 636.36 726.68 580.05 744.92 541.78 472.92 901.36 681.59 742.96 TRUE FALSE 572.6683824 705.8399368 543.2206465 542.8481892 846.3907156 637.857076 562.6541012 824.7838419 747.0597649 591.5443442 0.968090369 1.193215595 0.918309256 0.91767962 1.430815329 1.078291226 0.951161323 1.394289118 1.262897317 1 9.208342512 -6.719088945 24.99952849 1.188806486 1.007386396 0.241321858 0.16207304 227.518439 134303.4376 0.048756235 0.062943506 1.91E-07 6.719088945 -0.18142009 ESSTESSQSAKPVSGQDTSGNTEGS(ph)PAAEK ddPTM_K562_Paclitaxel_30min_R1 1 ESSTESSQSAKPVSGQDTSGNTEGSPAAEK 30 1 Q96S66-4;Q96S66-3;Q96S66-2;Q96S66 Q96S66-4 CLCC1 Chloride channel CLIC-like protein 1 1 ESSTES(0.001)S(0.001)QS(0.003)AKPVS(0.003)GQDT(0.054)S(0.245)GNT(0.245)EGS(0.449)PAAEK 70.71 0.00016643 19824000 4339.4 3153 9474.6 4652 3449.7 2566 2427.7 4559.6 2718.7 6230.9 TRUE FALSE 4400.164988 3497.255203 7082.62005 4353.641542 3919.607544 3021.044072 2888.343402 4172.23352 2979.843282 4961.03916 0.886944216 0.704944083 1.427648487 0.877566454 0.790077929 0.608953885 0.582205322 0.840999917 0.600649015 1 12.27642663 -6.723496078 3.402248237 0.710561754 0.997346312 0.246312033 0.207589691 0.315879547 7.544157925 0.064863324 0.082311984 1.89E-07 6.723496078 0.286784559 ESSTSEGADQKMS(ph)S(ph)PEDDSDTKR ddPTM_K562_Paclitaxel_30min_R1 2 ESSTSEGADQKMSSPEDDSDTKR 23 2 Q15424-2;Q15424;Q15424-3;Q15424-4 Q15424-2 SAFB Scaffold attachment factor B1 2 ES(0.01)S(0.093)T(0.054)S(0.063)EGADQKMS(0.882)S(0.882)PEDDS(0.011)DT(0.005)KR;ES(0.008)S(0.081)T(0.074)S(0.142)EGADQKMS(0.882)S(0.805)PEDDS(0.003)DT(0.004)KR 61.959 0.015355 16195000 6541.34 4372.96 14136.4 7054.62 5318.69 3699.93 3875.31 6900.7 6153.67 9098.6 TRUE FALSE 6632.938942 4850.414561 10567.49098 6602.168249 6043.185624 4356.060636 4610.629842 6314.442462 6744.757499 7244.300326 0.915607946 0.669549072 1.458731763 0.911360373 0.83419866 0.601308676 0.636449296 0.871642833 0.93104333 1 12.82263064 EST(ph)S(ph)S(ph)EKVS(ph)QS(ph)PSK ddPTM_K562_Paclitaxel_30min_R1 1 ESTSSEKVSQSPSK 14 1 D6RC71;D6RF48;Q9P2W9 D6RC71 STX18 Syntaxin-18 5 ES(0.309)T(0.873)S(0.874)S(0.952)EKVS(0.976)QS(0.507)PS(0.508)K 41.399 0.030981 0 264.77 146.45 538.5 416.02 202.66 139.28 206.73 339.38 239.68 462.52 TRUE FALSE 268.4775969 162.4399063 402.5490149 389.3383392 230.2657231 163.9793524 245.9559383 310.5475507 262.7023349 368.2581701 0.729047225 0.441103333 1.093116318 1.05724291 0.625283406 0.445283678 0.66788997 0.843287606 0.71336458 1 8.524573723 -10.00493571 1.231117534 1.000875852 0.734129829 0.127298733 0.207704279 33.71641085 38.26216183 0.33310138 0.065129891 9.89E-11 10.00493571 -0.266746023 ESTHQSEDVFLPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 ESTHQSEDVFLPSPR 15 0 A0A0A0MSK6;Q13017-2;Q13017 A0A0A0MSK6 ARHGAP5 Rho GTPase-activating protein 5 1 ESTHQSEDVFLPS(1)PR;ESTHQSEDVFLPS(1)PR 121.01 0.00038833 16054200 2369.4 2332.81 2883.4 2605.1 2370.9 1992.59 1963.4 2568.8 2381.9 2718.2 TRUE FALSE 2402.57891 2587.514085 2155.450009 2438.020546 2693.85672 2345.947859 2335.9449 2350.564406 2610.692138 2164.229348 1.110131379 1.1955822 0.995943434 1.126507479 1.24471869 1.083964535 1.079342586 1.086097649 1.20629181 1 11.07963768 -11.19987776 5.335553663 0.999993356 1.123467525 0.226861997 0.0693655 5.48E-06 8.22E-07 0.067127765 0.016279998 6.31E-12 11.19987776 0.12347417 ESVGGS(ph)PQTK ddPTM_K562_Paclitaxel_30min_R1 1 ESVGGSPQTK 10 0 Q08495-3;Q08495-2;Q08495;Q08495-4;E5RFK4;E5RGQ7;E5RJC0;E5RGQ0 Q08495-3 DMTN Dematin 1 ESVGGS(0.997)PQT(0.003)K 111.94 0.0048584 13598000 2583.6 2193.1 4560.9 3359.7 2502.6 2372.9 2068.2 3067.4 2598.2 3536.2 TRUE FALSE 2619.778371 2432.550075 3409.444387 3144.223879 2843.496489 2793.700498 2460.630153 2806.805224 2847.768719 2815.520499 0.930477463 0.863978819 1.210946391 1.116746932 1.009936348 0.9922501 0.873952136 0.99690456 1.011453733 1 11.45918594 -7.268510419 3.582452939 0.967047961 1.033745491 0.067427753 0.095426668 0.675912597 18.96403706 0.037577845 0.034847802 5.39E-08 7.268510419 0.066697531 ESVNS(ph)PVFGK ddPTM_K562_Paclitaxel_30min_R1 2 ESVNSPVFGK 10 0 E7ESJ3;Q9UPS8;Q9UPS8-2 E7ESJ3 ANKRD26 Ankyrin repeat domain-containing protein 26 1 ESVNS(1)PVFGK;ESVNS(1)PVFGK 137.95 0.00099998 48330000 4516.5 3840.3 8795.5 5130.1 4308.7 3323.8 3234 4942.4 3804.4 6615.6 TRUE FALSE 4579.744935 4259.596941 6574.967244 4801.078347 4895.617887 3913.229262 3847.634617 4522.512271 4169.829619 5267.337089 0.869461145 0.808681288 1.248252605 0.911481127 0.929429388 0.742923644 0.730470549 0.858595566 0.791639029 1 12.36285807 -7.088456871 4.467386853 0.810378744 0.964853912 0.19657155 0.129032622 0.347068821 12.12565133 0.043884093 0.044572249 8.16E-08 7.088456871 0.154475168 ESVPEFPLS(ph)PPK ddPTM_K562_Paclitaxel_30min_R1 1 ESVPEFPLSPPK 12 0 A2A2D0;P16949;P16949-2 A2A2D0 STMN1 Stathmin 1 ESVPEFPLS(1)PPK 119.25 0.002985 31964000 2855.3 2346.4 5660.7 3839.6 2874.4 2225.9 2328.2 3395.7 1596.8 4169.3 TRUE FALSE 2895.283009 2602.587887 4231.586274 3593.345241 3265.941944 2620.632112 2769.963796 3107.21409 1750.179775 3319.594371 0.872179756 0.784007802 1.274729922 1.082465157 0.983837656 0.789443474 0.834428393 0.936022219 0.527226998 1 11.69679125 -7.209606553 5.433288898 0.814410073 1.009151885 0.228773092 0.166866644 0.327742783 22.27547421 0.057347464 0.056695328 6.17E-08 7.209606553 0.194741812 ESVSTASDQPSHS(ph)LER ddPTM_K562_Paclitaxel_30min_R1 1 ESVSTASDQPSHSLER 16 0 Q5VWU8;Q5VWV2;Q8TEW0-9;Q8TEW0-10;Q8TEW0-8;Q8TEW0-5;Q8TEW0-3;Q8TEW0-7;Q8TEW0-6;Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0;F5GZI3 Q5VWU8 PARD3 Partitioning defective 3 homolog 1 ESVSTASDQPS(0.043)HS(0.957)LER 170.16 2.84E-08 3991700 895.9 642.88 907.43 842.42 831.98 810.55 621.72 887.05 712.95 974.5 TRUE FALSE 908.4453641 713.0718125 678.3380735 788.3909517 945.3097615 954.2896618 739.6881244 811.6895657 781.432033 775.8963651 1.170833381 0.919029711 0.87426376 1.016103422 1.218345393 1.229918975 0.953333664 1.046131419 1.007134546 1 9.599720157 -5.210425124 21.91044116 1.035339997 1.170836579 0.128407606 0.109581749 23588.40623 10129792.67 0.030418118 20.2609553 6.16E-06 5.210425124 0.135496582 ESYKYFPSS(ph)LSPVTPSESLPRPR ddPTM_K562_Paclitaxel_30min_R1 1 ESYKYFPSSLSPVTPSESLPRPR 23 2 K7EKZ6;K7EQ21;Q9P0U4;Q9P0U4-2 K7EKZ6 CXXC1 CXXC-type zinc finger protein 1 1 ES(0.003)Y(0.002)KY(0.002)FPS(0.176)S(0.398)LS(0.398)PVT(0.019)PS(0.001)ESLPRPR 56.748 0.0096353 9640300 905.6 682.57 1460.6 1040.5 710.13 617.66 564.24 716.26 1172.1 1250.6 TRUE FALSE 918.281194 757.0953009 1091.853466 973.7669871 806.8617286 727.1933286 671.3015945 655.4092422 1284.685442 995.7270335 0.922221817 0.760344226 1.09653894 0.977945716 0.810324217 0.730313936 0.674182353 0.658221802 1.290198417 1 9.959606489 -3.153794991 15.94761871 0.874131818 0.868658259 0 0.193857847 0 0 0.044561974 0 0.000701786 3.153794991 -0.005473559 ESYSVYVYK ddPTM_K562_Paclitaxel_30min_R1 2 ESYSVYVYK 9 0 Q99880;Q99877;Q5QNW6-2;P57053;O60814;P58876;P62807;Q5QNW6;Q93079;U3KQK0;Q99879 Q99880 HIST1H2BL;HIST1H2BN;HIST2H2BF;H2BFS;HIST1H2BK;HIST1H2BD;HIST1H2BC;HIST1H2BH;HIST1H2BM Histone H2B type 1-L;Histone H2B type 1-N;Histone H2B type 2-F;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-M 0 ; 167.33 1.59E-05 67479000 2808.4 2492.6 4500.4 2903.2 2624.9 2230.3 2587.2 3603.2 3131 4995.3 FALSE TRUE 2847.726265 2764.750497 3364.21836 2717.001746 2982.45582 2625.81239 3078.107694 3297.08567 3431.74654 3977.255118 0.716002917 0.695140346 0.845864361 0.683134892 0.749877926 0.660207181 0.773927647 0.82898521 0.86284295 1 11.95755739 -8.864619399 1.073043719 0.995696839 0.728222782 0.747981339 0.049684038 0.237776496 0.602319421 0.046749627 0.015529341 1.37E-09 8.864619399 -0.267474057 ESYTEEIVS(ph)EAESHVS(ph)GISR ddPTM_K562_Paclitaxel_30min_R1 1 ESYTEEIVSEAESHVSGISR 20 0 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 2 ES(0.003)YT(0.014)EEIVS(0.982)EAES(0.005)HVS(0.985)GIS(0.012)R 94.295 0.0020301 9671200 1332 1063.5 1382.8 1092.2 955.18 938.03 1136.4 1741.8 1298.8 2112.4 TRUE FALSE 1350.65211 1179.616527 1033.695038 1022.151181 1085.291687 1104.37645 1352.025968 1593.823218 1423.555543 1681.89172 0.803055329 0.701362943 0.614602608 0.607738993 0.645280356 0.656627556 0.803872182 0.947637234 0.846401422 1 10.71586911 -7.975193452 2.848828785 0.922335958 0.665738661 0.773344347 0.063085918 0.132000026 2.170372757 0.033253202 0.019426873 1.06E-08 7.975193452 -0.256597298 ESYTEEIVS(ph)EAESHVSGISR ddPTM_K562_Paclitaxel_30min_R1 4 ESYTEEIVSEAESHVSGISR 20 0 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 ESYTEEIVS(1)EAESHVSGISR;ESYTEEIVS(0.992)EAES(0.008)HVSGISR;ESYTEEIVS(1)EAESHVSGISR;ESYTEEIVS(1)EAESHVSGISR 206.92 1.12E-23 115850000 7834.16 6173.62 7448.12 5518.44 5364.76 5575.19 6908.93 8604.23 7329.31 10676.4 TRUE FALSE 7943.86241 6847.676709 5567.749989 5164.511958 6095.531138 6563.871667 8219.8634 7873.246956 8033.322974 8500.54382 0.934512259 0.805557486 0.654987505 0.607550772 0.717075433 0.772170794 0.966980887 0.92620509 0.945036358 1 13.05333942 -7.702895553 4.49919951 0.954300447 0.735996235 0.599657262 0.08436679 0.161401267 6.591002026 0.037582159 0.027918532 1.98E-08 7.702895553 -0.218304212 ESYTEEIVSEAESHVS(ph)GISR ddPTM_K562_Paclitaxel_30min_R1 3 ESYTEEIVSEAESHVSGISR 20 0 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 ESYTEEIVSEAES(0.003)HVS(0.961)GIS(0.036)R;ESYTEEIVSEAES(0.001)HVS(0.86)GIS(0.139)R;ESYTEEIVSEAES(0.002)HVS(0.989)GIS(0.009)R 169.33 3.44E-13 18331400 3605.45 3108.44 2749.12 2766.17 2379.62 2350.12 2841.25 4171.81 3032.68 4427.47 TRUE FALSE 3655.937424 3447.829991 2055.070655 2588.760237 2703.764531 2766.880785 3380.362355 3817.388701 3323.982464 3525.149184 1.037101477 0.978066406 0.582974095 0.734368988 0.766992939 0.784897501 0.958927461 1.082901319 0.942933842 1 11.7834686 -7.862934661 4.373940733 1.011349188 0.805336364 0.348778605 0.122604725 0.258787431 8.732706885 0.058047214 0.038553792 1.37E-08 7.862934661 -0.206012823 ET(ph)GS(ph)S(ph)SS(ph)YHKR ddPTM_K562_Paclitaxel_30min_R1 1 ETGSSSSYHKR 11 1 A0A087WYW3;P30414 A0A087WYW3 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 4 ET(1)GS(0.996)S(0.533)S(0.476)S(0.526)Y(0.469)HKR 71.176 0.020478 6055100 72.032 115.8 163.91 116.14 149.77 0 0 71.656 131.11 143.81 TRUE FALSE 73.04067024 128.4434356 122.5288933 108.6913002 170.1712096 0 0 65.56837554 143.7037013 114.5014431 0.637901744 1.121762592 1.070107852 0.949257034 1.486192707 0 0 0.572642351 1.255038343 1 6.83922197 -7.25702453 24.99938818 0.503480282 1.052044052 0.252837929 0.412176041 518.2296346 2934515.358 0.143705527 0.138978837 5.53E-08 7.25702453 0.54856377 ET(ph)QSPEQVK ddPTM_K562_Paclitaxel_30min_R1 1 ETQSPEQVK 9 0 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 ET(0.595)QS(0.405)PEQVK 106.26 0.019575 52489000 2949.6 2747 5015.4 3410.1 2451.2 2112.4 2478.7 3254.8 1833.4 4323.7 TRUE FALSE 2990.9035 3046.92675 3749.20024 3191.391449 2785.094939 2487.00448 2949.020385 2978.284424 2009.506262 3442.527567 0.868810327 0.885084198 1.089083578 0.927048916 0.809026184 0.722435604 0.856643942 0.865144684 0.583729897 1 11.74925249 -6.742984444 4.745042732 0.796860006 0.951031357 0.253328195 0.1143628 0.251308723 14.10565998 0.034277614 0.042660527 1.81E-07 6.742984444 0.154171351 ET(ph)SSDVALASHILTALR ddPTM_K562_Paclitaxel_30min_R1 1 ETSSDVALASHILTALR 17 0 O00273;O00273-2 O00273;O00273-2 DFFA DNA fragmentation factor subunit alpha 1 ET(0.428)S(0.325)S(0.248)DVALASHILTALR 120.56 1.07E-05 0 1049.3 1077.6 1194.1 1151.5 834.01 1143.5 1242.4 1439.5 999.42 2018.6 TRUE FALSE 1063.993437 1195.256012 892.6346866 1077.647944 947.6162819 1346.283669 1478.138914 1317.20549 1095.418757 1607.208212 0.66201344 0.74368461 0.555394553 0.670509232 0.589603932 0.837653553 0.91969348 0.819561199 0.681566177 1 10.65034113 -7.27354209 23.88961246 0.8446674 0.646289208 0.576524388 0.088788198 325.438693 642382.8312 0.030850536 0.027434428 5.33E-08 7.27354209 -0.198378192 ET(ph)T(ph)ITR ddPTM_K562_Paclitaxel_30min_R1 2 ETTITR 6 0 A6NFH5 A6NFH5 FABP12 Fatty acid-binding protein 12 2 ET(1)T(0.999)IT(0.001)R;ET(1)T(1)ITR 47.916 0.027347 708737600 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 ET(ph)VNSPAIYK ddPTM_K562_Paclitaxel_30min_R1 1 ETVNSPAIYK 10 0 Q9Y3A2 Q9Y3A2 UTP11L Probable U3 small nucleolar RNA-associated protein 11 1 ET(0.937)VNS(0.063)PAIYK 150.14 0.0007266 25088000 1775 1511.4 3240.5 2247.4 1488.3 1417.9 1408.8 1899.7 1344.8 2480.7 TRUE FALSE 1799.855476 1676.419763 2422.395697 2103.261823 1691.031657 1669.344657 1676.112446 1738.308627 1473.974049 1975.131978 0.911258334 0.848763415 1.22644751 1.064871536 0.856161348 0.845181322 0.848607822 0.880097455 0.746266105 1 10.94773334 -6.772732269 24.40978581 0.855141389 1.016373803 0.310488324 0.109192073 198.2394836 428496.6463 0.035167067 0.04024792 1.69E-07 6.772732269 0.161232414 ETAVPGPLGIEDISPNLS(ph)PDDKSFSR ddPTM_K562_Paclitaxel_30min_R1 1 ETAVPGPLGIEDISPNLSPDDKSFSR 26 1 A6NNK5;Q12888;Q12888-3;Q12888-2 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 ETAVPGPLGIEDIS(0.058)PNLS(0.923)PDDKS(0.013)FS(0.006)R 54.086 0.010569 91603000 1232.5 699.12 1924 1142.8 877.51 1063.7 730.7 1158.9 1301.9 1369.8 TRUE FALSE 1249.758803 775.4522859 1438.262404 1069.505923 997.0417184 1252.33226 869.3465105 1060.444211 1426.953312 1090.634008 1.145901185 0.71101055 1.318739736 0.980627704 0.914185429 1.148260783 0.797101965 0.97231904 1.308370454 1 10.09095133 -8.720531769 24.99923062 1.154186484 0.994478758 0.106053783 0.180474609 274.3200188 167641.2078 0.11505931 0.043487243 1.90E-09 8.720531769 -0.159707726 ETCSTLAES(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 ETCSTLAESPR 11 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 ETCSTLAES(1)PR;ETCSTLAES(1)PR 158.86 0.0006678 84457000 2942.5 2878.62 3599.9 3053 2799.3 2432.34 2996.07 3518.5 2104.98 3913.7 TRUE FALSE 2983.704078 3192.917466 2691.060722 2857.194245 3180.612053 2863.681347 3564.558642 3219.581463 2307.172734 3116.085792 0.957516666 1.02465647 0.863602899 0.916917709 1.020707472 0.91899952 1.143921856 1.033213358 0.740407321 1 11.60551924 ETCSTLAES(ph)PRNGLQEK ddPTM_K562_Paclitaxel_30min_R1 2 ETCSTLAESPRNGLQEK 17 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 ETCS(0.001)T(0.021)LAES(0.979)PRNGLQEK;ETCSTLAES(1)PRNGLQEK 117.18 0.0010756 69066000 4168.8 3764.3 7505.7 4126.2 3069 3547.4 2921.9 4149.2 5024.5 5713.3 TRUE FALSE 4227.176062 4175.299004 5610.793206 3861.564 3487.049759 4176.481582 3476.315272 3796.699562 5507.125675 4548.926324 0.929268966 0.917864724 1.23343242 0.848895701 0.766565451 0.918124692 0.764205666 0.834636416 1.21064297 1 12.15131035 ETERAS(ph)PIKMDLAPSK ddPTM_K562_Paclitaxel_30min_R1 1 ETERASPIKMDLAPSK 16 2 E7EVA0;P27816;P27816-2;P27816-6 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 ET(0.002)ERAS(0.998)PIKMDLAPSK 98.421 0.025648 91237000 3373.2 2235.9 7750.5 3629 2880.8 2100.9 1998 3852.3 1356.5 4974.4 TRUE FALSE 3420.435207 2480.023123 5793.790418 3396.252183 3273.213732 2473.465117 2377.11007 3525.02307 1486.797886 3960.614549 0.863612241 0.62617129 1.46285137 0.857506364 0.82644087 0.624515485 0.600187178 0.890019219 0.375395754 1 11.95150859 -6.88361129 2.71400966 0.688085277 0.969226899 0.185557675 0.251259479 0.446814444 6.670180101 0.083030305 0.097006658 1.31E-07 6.88361129 0.281141622 ETES(ph)APGS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 ETESAPGSPR 10 0 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50;H0YBW1 Q6PKG0 LARP1 La-related protein 1 2 ET(0.016)ES(0.984)APGS(1)PR 119.21 0.018227 17419000 6177.8 5211.1 7164.5 6369.6 6019.2 5847.3 6084.2 8070.1 4435.3 9382.2 TRUE FALSE 6264.30826 5780.065521 5355.733366 5961.082365 6839.116946 6884.236555 7238.645188 7384.494633 4861.330382 7470.10249 0.838583978 0.773759869 0.716955808 0.797992045 0.915531876 0.921571901 0.969015512 0.988539935 0.650771578 1 12.86691232 -6.708874132 4.687757704 0.911110985 0.773837342 0.290940196 0.096299264 0.255037954 11.69159278 0.02879736 0.036724817 1.95E-07 6.708874132 -0.137273643 ETLVYLTHLDYVDTER ddPTM_K562_Paclitaxel_30min_R1 2 ETLVYLTHLDYVDTER 16 0 O14980 O14980 XPO1 Exportin-1 0 ; 181.75 9.78E-10 11399100 4462.6 4802.9 6804.7 5758.6 5165.9 4992.6 5251.5 6219.5 5546.4 7348.1 FALSE TRUE 4525.090168 5327.296864 5086.769326 5389.269171 5869.583039 5877.96751 6247.94471 5691.114654 6079.156502 5850.553187 0.773446548 0.910562932 0.869451001 0.921155487 1.003252659 1.004685766 1.067923752 0.972748127 1.039073795 1 12.51435733 -6.04014408 0.712195891 1.024854883 0.776129177 0.814289269 0.036143248 0.530463404 0.396593797 0.017520689 0.091088933 9.12E-07 6.04014408 -0.248725706 ETLWNQS(ph)VI ddPTM_K562_Paclitaxel_30min_R1 1 ETLWNQSVI 9 0 J3KRP5 J3KRP5 LRRC47 1 ETLWNQS(1)VI 95.352 0.013619 7767100 224.34 277.11 200.15 190.18 271.67 279.2 116.71 189.16 175.95 205.99 TRUE FALSE 227.4814521 307.3658069 149.6196571 177.982706 308.6760534 328.7121998 138.8551132 173.0896773 192.8507837 164.0091249 1.387004853 1.874077476 0.912264224 1.085200022 1.88206634 2.004231167 0.846630413 1.055366141 1.175853988 1 7.357632274 -7.788790535 24.9999915 1.024076396 1.508552181 0.35159513 0.335330076 291.4391008 266383.55 0.151904448 0.102441366 1.63E-08 7.788790535 0.484475786 ETPHS(ph)PGVEDAPIAK ddPTM_K562_Paclitaxel_30min_R1 3 ETPHSPGVEDAPIAK 15 0 Q9UHB6;Q9UHB6-4;F8VS07;F8VQE1;Q9UHB6-3;Q9UHB6-2;Q9UHB6-5 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 ETPHS(1)PGVEDAPIAK;ET(0.002)PHS(0.998)PGVEDAPIAK;ET(0.004)PHS(0.996)PGVEDAPIAK 210.02 1.15E-13 273530000 17003 15015.8 30225.8 18995.2 14845.8 12950.4 12480.3 18655.9 17636.7 22085.6 TRUE FALSE 17241.09446 16655.27582 22594.92296 17776.93289 16868.0493 15246.97161 14848.37177 17070.96485 19330.78384 17584.5426 0.980468748 0.947154339 1.284930946 1.010940876 0.959254368 0.867066716 0.84439909 0.970793795 1.099305468 1 14.10202019 -6.603026582 4.701106161 0.946252375 1.071330694 0.180318571 0.106590757 0.339547447 13.69336034 0.033617357 0.044129473 2.49E-07 6.603026582 0.12507832 ETPPNGNLS(ph)PAPR ddPTM_K562_Paclitaxel_30min_R1 1 ETPPNGNLSPAPR 13 0 P48634-2;P48634-3;P48634 P48634-2 PRRC2A Protein PRRC2A 1 ETPPNGNLS(1)PAPR 94.717 0.012369 25068000 646.74 525.92 580.27 520.53 514.06 540.43 468.29 733.26 343.86 589.18 TRUE FALSE 655.7963554 583.3417241 433.7736618 487.1455356 584.0836751 636.2676725 557.1455829 670.9649861 376.8892894 469.1047926 1.397974111 1.243521135 0.924683927 1.03845781 1.245102767 1.35634443 1.187678301 1.430309382 0.803422381 1 8.87376643 -8.774970545 24.99998287 0.901711084 1.215600146 0.416498746 0.153926 282.8119117 522503.1802 0.153888259 0.040621483 1.68E-09 8.774970545 0.313889063 ETPSQRRATRSGAQAS(ph)S(ph)T(ph)PLSPTR ddPTM_K562_Paclitaxel_30min_R1 1 ETPSQRRATRSGAQASSTPLSPTR 24 3 P02545-6;P02545;P02545-3;Q3BDU5;P02545-2 P02545-6;Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C 3 ETPSQRRATRS(0.001)GAQAS(0.742)S(0.758)T(0.763)PLS(0.401)PT(0.334)R 52.824 0.013108 53057000 269.25 235.55 469 338.57 256.25 240.29 162.06 292.26 316.73 319.46 TRUE FALSE 273.0203307 261.2681456 350.5951495 316.8556356 291.1555883 282.9020577 192.810039 267.4306888 347.1533317 254.3538766 1.073387732 1.027183659 1.378375491 1.245727566 1.144687049 1.112238042 0.758038531 1.051411884 1.364843879 1 7.990693272 -7.372244037 3.94259601 1.036282066 1.181256715 0.115630404 0.163938183 0.516276795 14.11249189 0.063574442 0.05547627 4.24E-08 7.372244037 0.14497465 ETPSSSPAS(ph)PQETR ddPTM_K562_Paclitaxel_30min_R1 2 ETPSSSPASPQETR 14 0 Q9BX66-2;S4R406;Q9BX66-7;Q9BX66-3;Q9BX66-11;Q9BX66;Q9BX66-4;Q9BX66-9;Q9BX66-8;Q9BX66-10;Q9BX66-6;Q9BX66-5;Q9BX66-12 Q9BX66-2;Q9BX66-4 SORBS1 Sorbin and SH3 domain-containing protein 1 1 ETPSSSPAS(1)PQETR;ETPSSSPAS(1)PQETR 193.98 3.02E-07 28183000 3777.2 3439.3 4939.9 4739.4 3639 3639.2 2978.2 4060.9 2936.4 4263.6 TRUE FALSE 3830.092454 3814.814405 3692.761149 4435.436097 4134.693409 4284.561023 3543.297903 3715.901198 3218.45434 3394.67598 1.128264517 1.123763926 1.087809609 1.306585996 1.217993539 1.262141379 1.043780886 1.094626179 0.948088819 1 11.72905816 -7.853240312 7.033499737 1.027082588 1.186822682 0.570685645 0.070608832 0.190893223 12.41460083 0.031958312 0.021512747 1.40E-08 7.853240312 0.159740094 ETQS(ph)PEQVK ddPTM_K562_Paclitaxel_30min_R1 2 ETQSPEQVK 9 0 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 ET(0.046)QS(0.954)PEQVK;ET(0.004)QS(0.996)PEQVK 105.25 0.0086334 173339000 5300.2 4595.6 9014.7 6505.5 5109.6 3839 4040.5 6239.8 3891.3 7318.8 TRUE FALSE 5374.419153 5097.363149 6738.827493 6088.266348 5805.614026 4519.792748 4807.163782 5709.690042 4265.076752 5827.224543 0.922294844 0.874749739 1.156438617 1.044796936 0.996291456 0.775633874 0.824949124 0.979830106 0.731922499 1 12.50859319 -7.187372202 8.948978108 0.858962288 1.0036742 0.302281016 0.103467776 0.516733794 59.13413384 0.034550485 0.034554289 6.50E-08 7.187372202 0.144711912 ETQS(ph)PEQVKSEK ddPTM_K562_Paclitaxel_30min_R1 1 ETQSPEQVKSEK 12 1 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 ETQS(1)PEQVKSEK 131.79 0.001995 99680000 2970.1 1675.2 6603.8 3735.8 2548 1969.5 2065.1 3387.6 2955.3 4441.9 TRUE FALSE 3011.690564 1858.104001 4936.589015 3496.202509 2895.080738 2318.763172 2456.941944 3099.802235 3239.16977 3536.638342 0.851568714 0.525387054 1.395842192 0.988566591 0.818596774 0.655640455 0.694711109 0.876482675 0.915889457 1 11.78816298 -6.817582915 7.814455825 0.804960498 0.943068501 0.055172683 0.219078545 0.704780912 85.05028475 0.0712194 0.081201548 1.52E-07 6.817582915 0.138108003 ETSAATLSPGASS(ph)RGWDDGDTR ddPTM_K562_Paclitaxel_30min_R1 1 ETSAATLSPGASSRGWDDGDTR 22 1 A0A087WTU3;Q9Y6I9 A0A087WTU3 TEX264 Testis-expressed sequence 264 protein 1 ETSAATLSPGAS(0.008)S(0.802)RGWDDGDT(0.189)R 54.511 0.023893 684550000 1129.4 822.54 1207.8 1092.8 1032.2 952.63 860 1132.5 652.31 928.26 TRUE FALSE 1145.215084 912.3476989 902.8759521 1022.712699 1172.803115 1121.565555 1023.18051 1036.287056 714.9672901 739.0801025 1.54951416 1.23443683 1.221621241 1.383764352 1.586841685 1.517515559 1.384397316 1.402130909 0.967374562 1 9.529586924 -8.75980593 24.99999832 0.983687099 1.405641474 0.689826663 0.11432306 25.16394253 385186.5822 0.095937018 0.031896768 1.74E-09 8.75980593 0.421954374 ETSFGS(ph)SENITMTSLSK ddPTM_K562_Paclitaxel_30min_R1 2 ETSFGSSENITMTSLSK 17 0 Q9UMZ2-6;Q9UMZ2-9;Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2;A0A087WZS7 Q9UMZ2-6 SYNRG Synergin gamma 1 ETS(0.002)FGS(0.875)S(0.104)ENIT(0.019)MTSLSK;ETSFGS(0.776)S(0.152)ENIT(0.07)MT(0.001)SLSK 123.14 5.21E-05 81490000 4192.6 3755.4 7593 5087.4 3812.1 3103.34 3274.5 5359.8 4698.1 5743.1 TRUE FALSE 4251.309335 4165.427272 5676.053241 4761.116934 4331.372559 3653.673776 3895.819281 4904.451535 5149.373497 4572.653068 0.929724882 0.910943212 1.241304153 1.041215431 0.947234023 0.799027112 0.851982257 1.072561479 1.126123811 1 12.15881575 -8.458113397 24.95125201 1.075156049 0.965305655 0.146399664 0.116285083 403.0014751 155258.7048 0.070703389 0.033964768 3.48E-09 8.458113397 -0.109850394 ETSQVILRPS(ph)SSPNPTTIQNENLK ddPTM_K562_Paclitaxel_30min_R1 1 ETSQVILRPSSSPNPTTIQNENLK 24 1 Q9ULH0-2;Q9ULH0-4;Q9ULH0;Q9ULH0-5 Q9ULH0-2 KIDINS220 Kinase D-interacting substrate of 220 kDa 1 ET(0.006)S(0.024)QVILRPS(0.323)S(0.323)S(0.323)PNPTTIQNENLK 69.704 0.0013873 19667000 1033.8 633.93 1431.9 901.88 706.65 602.23 563.79 1142.4 610.17 840.74 TRUE FALSE 1048.27639 703.1446212 1070.399135 844.0374535 802.9076937 709.0270348 670.7662093 1045.345989 668.7795548 669.3967265 1.566001667 1.050415387 1.599050448 1.260892711 1.199449686 1.059203021 1.002045846 1.561623994 0.999078018 1 9.386717686 -6.620257146 3.511656641 1.153805981 1.376989406 0.239248878 0.210158804 0.399114565 9.624049443 0.062438371 0.083287602 2.40E-07 6.620257146 0.223183425 ETSQVILRPSS(ph)SPNPTTIQNENLK ddPTM_K562_Paclitaxel_30min_R1 1 ETSQVILRPSSSPNPTTIQNENLK 24 1 Q9ULH0-2;Q9ULH0-4;Q9ULH0;Q9ULH0-5 Q9ULH0-2 KIDINS220 Kinase D-interacting substrate of 220 kDa 1 ETS(0.001)QVILRPS(0.084)S(0.456)S(0.456)PNPT(0.001)TIQNENLK 92.034 0.00011398 34624000 1762.4 1442.8 3052.5 2315.7 1517.7 1412.1 1150.5 1830.1 1356.1 2436.5 TRUE FALSE 1787.079037 1600.329783 2281.858622 2167.181367 1724.436435 1662.516108 1368.801369 1674.621582 1486.359464 1939.939963 0.92120327 0.824937789 1.176252186 1.117138369 0.88891227 0.856993588 0.705589552 0.863233716 0.766188384 1 10.92179629 -6.961418179 6.114563771 0.826613546 1.00900493 0.33046982 0.114882367 0.218327434 21.76457184 0.0378451 0.042588302 1.09E-07 6.961418179 0.182391385 ETTSGTSTEPVKNS(ph)SPAPPQPAPGK ddPTM_K562_Paclitaxel_30min_R1 2 ETTSGTSTEPVKNSSPAPPQPAPGK 25 1 J3QSD7;Q9NYV4-3;Q9NYV4-2;Q9NYV4 J3QSD7 CDK12 Cyclin-dependent kinase 12 1 ETTSGTSTEPVKNS(0.5)S(0.5)PAPPQPAPGK;ETTSGTS(0.001)T(0.001)EPVKNS(0.499)S(0.499)PAPPQPAPGK 119.87 1.32E-08 36680000 5599.9 4242.8 13108.8 6341.4 4545.8 3256.8 3970.7 6718.3 3769.6 9646 TRUE FALSE 5678.315877 4706.043252 9799.321312 5934.690987 5165.014921 3834.347752 4724.119597 6147.538481 4131.686923 7680.139905 0.739350578 0.612754886 1.275930052 0.772732146 0.672515733 0.499254935 0.615108534 0.800446158 0.537970268 1 12.90691688 ETVFTKS(ph)PYQEFTDHLVK ddPTM_K562_Paclitaxel_30min_R1 2 ETVFTKSPYQEFTDHLVK 18 1 H0YEN5;E9PQD7;P15880 H0YEN5 RPS2 40S ribosomal protein S2 1 ETVFT(0.071)KS(0.923)PY(0.006)QEFTDHLVK;ET(0.029)VFT(0.391)KS(0.497)PY(0.082)QEFTDHLVK 84.403 0.0044216 47594000 4538.7 3088 8271.2 4429.4 3279.1 2320.44 2554.36 4839.9 3664.4 6103.4 TRUE FALSE 4602.255803 3425.158283 6183.033263 4145.318109 3725.768936 2731.937453 3039.036475 4428.720285 4016.381993 4859.52373 0.947059025 0.704834151 1.272353755 0.853029708 0.766694257 0.562182141 0.625377433 0.911348628 0.826497043 1 12.24659921 -6.518314785 22.79134476 0.763405824 0.966913157 0.191757255 0.174290433 96.53795407 482091.4873 0.051956991 0.069100749 3.03E-07 6.518314785 0.203507332 ETVNS(ph)PAIYK ddPTM_K562_Paclitaxel_30min_R1 3 ETVNSPAIYK 10 0 Q9Y3A2 Q9Y3A2 UTP11L Probable U3 small nucleolar RNA-associated protein 11 1 ET(0.012)VNS(0.988)PAIYK;ET(0.002)VNS(0.997)PAIY(0.001)K;ET(0.01)VNS(0.99)PAIYK 138.24 0.0010954 84948000 5863.4 4404.5 8480.5 5385.5 4811.5 4284 4219.6 5711 4765.3 7199.2 TRUE FALSE 5945.50569 4885.398205 6339.49289 5040.098135 5466.907759 5043.70725 5020.247072 5225.814903 5223.028357 5731.999088 1.037248192 0.852302684 1.105982885 0.87929151 0.953752378 0.879921154 0.87582831 0.91169151 0.911205371 1 12.48482266 ETVYCLNDDDETEVLKEDIIQGFR ddPTM_K562_Paclitaxel_30min_R1 1 ETVYCLNDDDETEVLKEDIIQGFR 24 1 P13010 P13010 XRCC5 X-ray repair cross-complementing protein 5 0 132.6 7.51E-13 4443400 437.73 463.71 1099.5 661.46 530.65 367.93 545.1 460.96 425.27 539.7 FALSE TRUE 443.8595705 514.339426 821.9176266 619.0369162 602.933514 433.1772195 648.5298794 421.7985708 466.1190837 429.7088438 1.032930965 1.196948663 1.912731466 1.440596174 1.403121027 1.008071455 1.509230933 0.981591552 1.084732349 1 8.747215659 -8.152984825 0.913459752 0.989676637 1.399704292 0.235019287 0.252890601 0.88711536 1.340017108 0.232703817 0.102791164 7.03E-09 8.152984825 0.410027655 ETWGSVIAS(ph)SPSAQASAHLLS(ph)S(ph)KA ddPTM_K562_Paclitaxel_30min_R1 1 ETWGSVIASSPSAQASAHLLSSKA 24 1 A0A669KB70 A0A669KB70 3 ET(0.36)WGS(0.129)VIAS(0.418)S(0.048)PS(0.048)AQAS(0.025)AHLLS(0.981)S(0.991)KA 44.106 0.030997 0 371.91 318.46 352.86 346.03 180.29 309.62 301.96 282.08 299.23 319.78 TRUE FALSE 377.1178874 353.2305398 263.7761289 323.8371846 204.8485503 364.5267597 359.2553337 258.1155433 327.9723785 254.6086605 1.481166771 1.387346916 1.036006114 1.271901686 0.804562382 1.431713906 1.411009873 1.01377362 1.288143058 1 7.992137683 -5.607107887 5.889856964 1.168627011 1.458942301 0.260223591 0.188767763 0.254875574 13.5514597 0.047839494 0.131559184 2.47E-06 5.607107887 0.29031529 EVCGFAPYERR ddPTM_K562_Paclitaxel_30min_R1 2 EVCGFAPYERR 11 1 J3QSB5;Q9Y3U8 J3QSB5 RPL36 60S ribosomal protein L36 0 ; 113.67 0.0070738 23733000 3659.8 3873.7 5053.7 4094.7 3336.6 3252.6 3549.1 4357.4 6980 5299 FALSE TRUE 3711.048491 4296.643666 3777.830932 3832.084269 3791.101409 3829.402941 4222.523197 3987.211672 7650.460187 4219.060891 0.879591119 1.018388636 0.895419865 0.908278967 0.898565227 0.90764344 1.000820634 0.945047198 1.813308787 1 12.04270619 -8.657329059 11.93884405 1.406070307 0.932242481 0.508231138 0.186905067 0.285693024 30.25516461 0.112763458 0.042561455 2.20E-09 8.657329059 -0.473827826 EVDEDS(ph)EPER ddPTM_K562_Paclitaxel_30min_R1 1 EVDEDSEPER 10 0 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 EVDEDS(1)EPER 87.216 0.02248 5847400 1657.3 1459.2 2282.2 1891.5 1632.4 1340.4 1517.6 2045.5 1241.7 2084.6 TRUE FALSE 1680.507313 1618.520391 1706.030384 1770.187656 1854.760517 1578.10112 1805.556678 1871.722007 1360.970833 1659.757376 1.01250179 0.975154811 1.027879381 1.06653399 1.117488944 0.950802294 1.087843744 1.127708203 0.819981796 1 10.69675665 -8.759775756 24.99957169 0.909990919 1.04411475 0.39190726 0.067613214 42.68199954 641473.6008 0.050849353 0.016919866 1.74E-09 8.759775756 0.134123831 EVDEDS(ph)EPEREVR ddPTM_K562_Paclitaxel_30min_R1 3 EVDEDSEPEREVR 13 1 F8WC91;B9A018;Q53GS9-3;Q53GS9 F8WC91 USP39 U4/U6.U5 tri-snRNP-associated protein 2 1 EVDEDS(1)EPEREVR;EVDEDS(1)EPEREVR;EVDEDS(1)EPEREVR 94.532 0.0087426 461584000 8850.7 7727.3 11551.7 9766.2 8118.3 6790.1 7410.9 8982.8 9367.7 9838 TRUE FALSE 8974.637107 8570.992746 8635.330465 9139.839644 9224.149904 7994.228897 8817.079588 8219.655071 10267.50944 7833.0102 1.145745617 1.094214424 1.102428089 1.166836173 1.177599629 1.020581959 1.125631062 1.049360956 1.310799958 1 12.93535112 -2.665906191 13.5166418 1.119894599 1.125331348 0 0.085356125 0 0 0.018210732 0 0.002158211 2.665906191 0.005436749 EVDFDS(ph)DPMEECLR ddPTM_K562_Paclitaxel_30min_R1 1 EVDFDSDPMEECLR 14 0 Q8N1G1 Q8N1G1 REXO1 RNA exonuclease 1 homolog 1 EVDFDS(1)DPMEECLR 222.75 9.19E-26 8676400 881.07 897.19 976.12 889.56 741.07 788.88 672.5 1019.7 654.89 853.88 TRUE FALSE 893.4076983 995.1482383 729.6864335 832.5076031 842.0162804 928.7767916 800.1033643 933.0701202 717.7951106 679.8587873 1.314107746 1.463757264 1.07329117 1.22453018 1.238516433 1.366131922 1.17686699 1.372446952 1.055800299 1 9.409091307 -8.878695642 5.733756451 1.004090506 1.27389563 0.48035354 0.104773019 0.174340087 7.484071514 0.100430037 0.026142556 1.32E-09 8.878695642 0.269805124 EVDGLLTSEPMGS(ph)PVSSK ddPTM_K562_Paclitaxel_30min_R1 4 EVDGLLTSEPMGSPVSSK 18 0 H3BUF6;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 EVDGLLTSEPMGS(0.996)PVS(0.002)S(0.001)K;EVDGLLTS(0.002)EPMGS(0.998)PVSSK;EVDGLLTSEPMGS(0.999)PVSSK;EVDGLLTS(0.003)EPMGS(0.996)PVS(0.001)SK 218.64 1.46E-25 256162000 9246.2 8664.2 17148.3 10497.2 7941.3 7367.7 7039.24 10465.6 5580.2 13876.9 TRUE FALSE 9375.675327 9610.186656 12818.99958 9823.956576 9023.039507 8674.258147 8374.899043 9576.481956 6116.203143 11048.78016 0.848571081 0.869796169 1.160218539 0.889143999 0.816654814 0.785087405 0.757993092 0.866745633 0.553563656 1 13.43159948 -6.686293579 3.503957625 0.785844084 0.959586906 0.237722825 0.130197776 0.317565418 7.742917994 0.039332498 0.050889543 2.06E-07 6.686293579 0.173742822 EVDMWS(ph)T(ph)GVIMYTL ddPTM_K562_Paclitaxel_30min_R1 1 EVDMWSTGVIMYTL 14 0 C9J2Q6 C9J2Q6 PHKG1 2 EVDMWS(0.883)T(0.883)GVIMY(0.096)T(0.138)L 47.706 0.031151 0 182.43 170.75 334.17 300.65 146.81 243.77 130.12 0 172.49 262.76 TRUE FALSE 184.9845828 189.3930624 249.8046505 281.3676547 166.8080075 286.9991868 154.8095907 0 189.0584352 209.2093678 0.884207934 0.905280029 1.19404142 1.344909445 0.797325709 1.371827609 0.739974469 0 0.903680544 1 7.708803642 -7.988465639 20.61410887 0.54510192 1.076923343 0.302281485 0.308208405 26.18138048 46789.79774 0.123307563 0.082951429 1.03E-08 7.988465639 0.531821423 EVEDKES(ph)EGEEEDEDEDLSK ddPTM_K562_Paclitaxel_30min_R1 2 EVEDKESEGEEEDEDEDLSK 20 1 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 EVEDKES(1)EGEEEDEDEDLSK;EVEDKES(1)EGEEEDEDEDLSK 106.02 0.00025646 71727000 4557.2 2666.3 12073.4 4631.6 2968 2464 2309.8 4983 2574.1 7445.9 TRUE FALSE 4621.01486 2957.415651 9025.320848 4334.549906 3372.291849 2900.955804 2748.072492 4559.663047 2821.353806 5928.421493 0.779468003 0.49885381 1.522381777 0.731147391 0.568834698 0.489330222 0.463542023 0.769119242 0.475903039 1 12.53343231 -6.514854552 24.74400142 0.605552733 0.929541122 0.188197721 0.281717618 512.435235 1580185.726 0.081034153 0.109771726 3.06E-07 6.514854552 0.323988389 EVELVS(ph)E ddPTM_K562_Paclitaxel_30min_R1 1 EVELVSE 7 0 O60832 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 EVELVS(1)E 110.31 0.0051215 59821000 8308.3 7967.2 10899 9773.8 7519.8 8041.4 7888.8 8864.5 8592.5 9386.4 TRUE FALSE 8424.641833 8837.085839 8147.412653 9146.952214 8544.124071 9467.429383 9385.658618 8111.405395 9417.848017 7473.446528 1.127276659 1.182464584 1.090181434 1.223926896 1.143264228 1.266809008 1.255867501 1.085363408 1.260174671 1 12.86755801 -5.254957622 22.19954758 1.174673989 1.127276561 0.013866265 0.084552413 703.6325488 2409548.293 0.019736917 0.16772545 5.56E-06 5.254957622 -0.047397429 EVES(ph)RLSPGESAYQK ddPTM_K562_Paclitaxel_30min_R1 1 EVESRLSPGESAYQK 15 1 A0A0G2JHC2;Q6NYC8;Q6NYC8-2 A0A0G2JHC2 PPP1R18 Phostensin 1 EVES(0.512)RLS(0.488)PGESAYQK 126.07 0.00059998 12928000 877.41 917.13 1431 1166.4 870.61 945.05 688.96 1131.2 1085.2 1219.3 TRUE FALSE 889.696447 1017.265355 1069.726352 1091.592325 989.2018215 1112.641348 819.6865634 1035.097499 1189.438309 970.8059907 0.916451336 1.047856487 1.101895087 1.124418612 1.018949029 1.14610062 0.84433612 1.066224878 1.225207014 1 9.923039201 -5.271319166 4.259376226 1.064231796 0.90632959 0.176796628 0.096029457 0.365358186 15.39398324 0.024118574 0.172902068 5.35E-06 5.271319166 -0.157902206 EVESRLS(ph)PGESAYQK ddPTM_K562_Paclitaxel_30min_R1 1 EVESRLSPGESAYQK 15 1 A0A0G2JHC2;Q6NYC8;Q6NYC8-2 A0A0G2JHC2 PPP1R18 Phostensin 1 EVES(0.005)RLS(0.995)PGESAYQK 184.22 2.69E-06 11210000 1078.8 992.15 1647.6 1175.5 1136.2 800 864.78 1391.8 1202.4 1683.8 TRUE FALSE 1093.906528 1100.476292 1231.643003 1100.108691 1290.969676 941.8687674 1028.867491 1273.557903 1317.895892 1340.640636 0.815958057 0.820858523 0.918697353 0.820584325 0.962949833 0.70255126 0.767444655 0.949962181 0.983034422 1 10.38870685 -8.420997177 5.240744459 0.984219864 0.833161195 0.501077588 0.068204894 0.199805677 8.156444664 0.040842048 0.018717235 3.79E-09 8.420997177 -0.151058669 EVGGGHGCT(ph)SPPFPQEAR ddPTM_K562_Paclitaxel_30min_R1 2 EVGGGHGCTSPPFPQEAR 18 0 A0A1B0GVD3;Q6ZN17-2;Q6ZN17 A0A1B0GVD3 LIN28B Protein lin-28 homolog B 1 EVGGGHGCT(0.5)S(0.5)PPFPQEAR;EVGGGHGCT(0.952)S(0.048)PPFPQEAR 86.777 0.006729 194640000 4084.7 3921.2 5219.6 4517.4 4298.4 4074.7 3816.6 4926.1 4406.7 4424.2 TRUE FALSE 4141.898402 4349.329877 3901.847425 4227.674183 4883.914853 4797.290833 4540.779926 4507.597057 4829.983225 3522.545612 1.175825343 1.234712153 1.107678326 1.200175853 1.386473134 1.361881821 1.289062067 1.279641928 1.371162721 1 11.78240267 -6.591070654 8.84606002 1.299533295 1.174802223 0.169344142 0.10719309 0.418663354 49.6943121 0.029738871 0.038422434 2.56E-07 6.591070654 -0.124731072 EVGGGHGCTS(ph)PPFPQEAR ddPTM_K562_Paclitaxel_30min_R1 4 EVGGGHGCTSPPFPQEAR 18 0 A0A1B0GVD3;Q6ZN17-2;Q6ZN17 A0A1B0GVD3 LIN28B Protein lin-28 homolog B 1 EVGGGHGCT(0.221)S(0.779)PPFPQEAR;EVGGGHGCT(0.217)S(0.783)PPFPQEAR;EVGGGHGCT(0.201)S(0.799)PPFPQEAR;EVGGGHGCT(0.266)S(0.734)PPFPQEAR 114.37 0.00023371 512197000 7347.2 6074.6 8012 7466.3 6413.7 6160.2 6398.6 6996.2 6891.4 7881.7 TRUE FALSE 7450.083468 6737.845371 5989.271509 6987.444936 7287.354525 7252.624977 7612.700947 6401.829141 7553.349762 6275.405214 1.187187634 1.073690884 0.954403948 1.113465139 1.161256409 1.155722177 1.213101097 1.020145938 1.203643351 1 12.6154929 -5.247397077 22.76902555 1.103261925 1.187187837 0.089673624 0.083045203 1896.210138 3074439.996 0.021019458 0.372496471 5.66E-06 5.247397077 0.083925912 EVIGGLCSLANIPLTPET(ph)QRDQER ddPTM_K562_Paclitaxel_30min_R1 1 EVIGGLCSLANIPLTPETQRDQER 24 1 Q01664 Q01664 TFAP4 Transcription factor AP-4 1 EVIGGLCSLANIPLT(0.419)PET(0.581)QRDQER 78.221 0.0018277 5852600 372.85 350.93 200.75 252.67 266.93 263.77 184.94 309.99 239.25 444.84 TRUE FALSE 378.0710503 389.2457242 150.0681797 236.4648771 303.2903852 310.545906 220.0313995 283.6544146 262.2310315 354.1813638 1.067450433 1.099001144 0.423704336 0.66763783 0.856313788 0.876799114 0.621239348 0.800873348 0.740386306 1 8.468344493 -5.712356222 24.99940671 0.742275591 1.083227673 0.445239507 0.149387608 98.97517765 50409.31035 0.037761217 0.099906434 1.94E-06 5.712356222 0.340952082 EVLFT(ph)T(ph)GLIRPVALVVDNT(ph)LGK ddPTM_K562_Paclitaxel_30min_R1 1 EVLFTTGLIRPVALVVDNTLGK 22 1 O75197 O75197 LRP5 Low-density lipoprotein receptor-related protein 5 3 EVLFT(1)T(1)GLIRPVALVVDNT(1)LGK 41.521 0.030471 15854000 4027 3927.7 6149.3 4387.9 3490.3 3143.9 3345.9 4181 3629.9 5813.7 TRUE FALSE 4083.390424 4356.539569 4596.833161 4106.479734 3965.737951 3701.426522 3980.767058 3825.797953 3978.568114 4628.864749 0.882158077 0.941168041 0.993080034 0.887146192 0.856740943 0.799640241 0.859987767 0.826508909 0.859512716 1 12.17644269 -6.493651013 5.713306686 0.855852022 0.939708768 0.235020243 0.055690145 0.216329681 21.34577796 0.015364729 0.02207554 3.21E-07 6.493651013 0.083856745 EVLTPTSTS(ph)DNETR ddPTM_K562_Paclitaxel_30min_R1 1 EVLTPTSTSDNETR 14 0 H7C150;H7C183;Q70CQ2-3;Q70CQ2-2;Q70CQ2 H7C150 USP34 Ubiquitin carboxyl-terminal hydrolase 34 1 EVLT(0.156)PT(0.014)S(0.107)T(0.156)S(0.567)DNETR 127.03 0.00032565 11423000 992.56 1020.4 1487.4 1182.3 1067.6 1074.2 918.3 1536 821.39 1260.5 TRUE FALSE 1006.458902 1131.810723 1111.887474 1106.47257 1213.025195 1264.694287 1092.542631 1405.507213 900.2881796 1003.609408 1.002839246 1.127740248 1.107888652 1.102493222 1.208662638 1.260145907 1.088613381 1.400452408 0.897050359 1 9.970982185 -4.044906627 0.863966683 1.157813667 2.00E-10 0.062409197 0.13187464 36.6977823 4.163500554 0.042173833 65.12575875 9.02E-05 4.044906627 -1.157813667 EVMESAVGNSS(ph)GSGQNEESPRKR ddPTM_K562_Paclitaxel_30min_R1 1 EVMESAVGNSSGSGQNEESPRKR 23 2 Q9NVF7 Q9NVF7 FBXO28 F-box only protein 28 1 EVMESAVGNS(0.002)S(0.472)GS(0.472)GQNEES(0.054)PRKR 64.26 0.003748 27094000 2591.6 2183.1 4512.4 2743.1 2192.4 1822.1 1947.9 2755.5 1852.7 3625.5 TRUE FALSE 2627.890396 2421.458241 3373.188811 2567.169844 2491.041998 2145.223851 2317.503856 2521.403076 2030.660113 2886.62111 0.910369008 0.838855585 1.168559601 0.889333843 0.862961193 0.743160869 0.802843105 0.873479054 0.703473035 1 11.49516604 -6.678387083 3.29899224 0.817082143 0.966780127 0.241119801 0.108992054 0.320677042 6.950431029 0.033157868 0.043203698 2.10E-07 6.678387083 0.149697984 EVMESAVGNSSGSGQNEES(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 EVMESAVGNSSGSGQNEESPR 21 0 Q9NVF7 Q9NVF7 FBXO28 F-box only protein 28 1 EVMESAVGNS(0.012)S(0.03)GS(0.074)GQNEES(0.884)PR 148.64 5.41E-18 13638000 849.38 1291.7 1402.8 1064.1 1046.1 830.36 988.26 1059.5 620.37 1220.1 TRUE FALSE 861.2739406 1432.732174 1048.64579 995.8533887 1188.596531 977.6126872 1175.777176 969.4888618 679.9593104 971.4429503 0.886592404 1.474849525 1.079472336 1.025128021 1.223537142 1.006351106 1.210340942 0.997988468 0.699947753 1 9.923985463 -8.527107654 6.536575732 0.847252573 1.133934595 0.319531648 0.163546 0.148229133 31.6965464 0.099204511 0.039815703 2.97E-09 8.527107654 0.286682022 EVMS(ph)PLQAMSSYTVAGR ddPTM_K562_Paclitaxel_30min_R1 2 EVMSPLQAMSSYTVAGR 17 0 Q9BYT8 Q9BYT8 NLN "Neurolysin, mitochondrial" 1 EVMS(0.992)PLQAMS(0.002)S(0.002)YT(0.003)VAGR;EVMS(0.999)PLQAMSSYTVAGR 116.29 3.39E-05 5868300 1989.52 2114.64 2327.58 2029.25 2061.7 1692.36 2133.22 2667.5 2057.43 2712.2 TRUE FALSE 2017.379418 2345.523546 1739.953642 1899.102988 2342.538445 1992.476284 2537.987359 2440.879225 2255.055344 2159.452151 0.9342089 1.086166019 0.805738456 0.879437401 1.084783677 0.922676746 1.175292241 1.130323366 1.044271966 1 11.07644963 -7.384537568 1.58991923 1.090653248 0.940971807 0.275502646 0.09572172 0.485583399 2.450218754 0.04471029 0.036956538 4.13E-08 7.384537568 -0.149681441 EVNS(ph)QEEEEEELLR ddPTM_K562_Paclitaxel_30min_R1 1 EVNSQEEEEEELLR 14 0 Q96RL1-2;Q96RL1-3;Q96RL1;D6RC40;D6RCQ3;Q96RL1-5 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 EVNS(1)QEEEEEELLR 108.18 0.0037344 8338900 371.89 374.74 472.47 323.49 283.09 266.09 323.98 269.79 317.72 350.27 TRUE FALSE 377.0976074 415.6553805 353.1891051 302.7427993 321.6516508 313.2773254 385.4535137 246.8696555 348.2384256 278.8847817 1.352162728 1.490419728 1.266433768 1.085547936 1.153349597 1.123321694 1.382124587 0.885203036 1.248682067 1 8.123525401 -2.000000001 0.262579767 1.057117296 3.759720376 0.379306768 0.138194974 51.29373346 0.710133134 0.163806733 62.25091689 0.01 2.000000001 2.702603079 EVPHS(ph)SPPYYEFLWGPR ddPTM_K562_Paclitaxel_30min_R1 2 EVPHSSPPYYEFLWGPR 17 0 Q9UBF1 Q9UBF1 MAGEC2 Melanoma-associated antigen C2 1 EVPHS(0.665)S(0.335)PPYYEFLWGPR;EVPHS(0.941)S(0.059)PPYYEFLWGPR 219.41 4.35E-24 146462000 4041.4 3768.4 4244.71 4436.1 3873.5 3770.94 3878.4 4688.8 3115.3 5382.4 TRUE FALSE 4097.992069 4179.846656 3173.080463 4151.588401 4401.136279 4439.663262 4614.306153 4290.457173 3414.538485 4285.463926 0.956254011 0.975354531 0.740428695 0.968760553 1.026991793 1.035981947 1.076734336 1.001165159 0.796772192 1 12.06523568 -6.50476644 24.50887072 0.996480473 0.891721288 0.189795522 0.091048427 942.0282627 1274716.049 0.026582301 0.038555936 3.13E-07 6.50476644 -0.104759184 EVPHSS(ph)PPYYEFLWGPR ddPTM_K562_Paclitaxel_30min_R1 1 EVPHSSPPYYEFLWGPR 17 0 Q9UBF1 Q9UBF1 MAGEC2 Melanoma-associated antigen C2 1 EVPHS(0.058)S(0.942)PPYYEFLWGPR 118.52 0.00020638 32374000 1294.5 1212.9 1289.3 1616.8 1352.9 1118 1145.9 1822.4 956.07 1464.6 TRUE FALSE 1312.626994 1345.328524 963.8002691 1513.105685 1537.187885 1316.261603 1363.328543 1667.575745 1047.904795 1166.113716 1.125642359 1.153685533 0.826506245 1.297562719 1.318214393 1.128759215 1.169121437 1.430028411 0.898630023 1 10.18749277 -6.29993979 24.99899579 1.198877989 1.04711832 0.122141233 0.167064696 992.4378786 644405.2324 0.045386844 0.067321206 5.01E-07 6.29993979 -0.151759669 EVPIPEHIDIYHLTR ddPTM_K562_Paclitaxel_30min_R1 2 EVPIPEHIDIYHLTR 15 0 C9JHK9;C9JZV3;Q9UG63;Q9UG63-2 C9JHK9 ABCF2 ATP-binding cassette sub-family F member 2 0 ; 136.14 8.42E-06 18422500 6023.9 6257.6 6708.4 5762.8 5337.7 4935.5 7027.5 8353.6 7230.4 9570 FALSE TRUE 6108.253185 6940.82593 5014.781452 5393.199801 6064.785108 5810.741627 8360.931439 7643.909538 7924.912226 7619.628747 0.801647087 0.910913925 0.658139867 0.707803488 0.795942336 0.762601673 1.097288558 1.003186611 1.040065401 1 12.89550499 -7.754421105 24.99825798 1.035400703 0.77199745 0.789336708 0.066382072 75.22292401 267936.067 0.027163672 0.020576335 1.76E-08 7.754421105 -0.263403252 EVPWS(ph)PSAEK ddPTM_K562_Paclitaxel_30min_R1 1 EVPWSPSAEK 10 0 Q5JSZ5-5;Q5JSZ5;Q5JT00 Q5JSZ5-5 PRRC2B Protein PRRC2B 1 EVPWS(0.995)PS(0.005)AEK 116.24 0.0037863 17992000 1933.3 1731.9 3505.8 2427.4 1742.8 1539.2 1590.4 2723.6 1451.1 2989.3 TRUE FALSE 1960.372165 1920.994699 2620.717431 2271.717429 1980.198866 1812.155509 1892.170098 2492.21318 1590.484639 2380.079019 0.823658437 0.807113833 1.10110522 0.954471432 0.831988707 0.761384599 0.795003058 1.047113629 0.66824867 1 11.21679376 -6.767778311 24.93859595 0.845735855 0.926233275 0.068268308 0.127207982 403.458617 1587282.733 0.039280819 0.045616092 1.71E-07 6.767778311 0.08049742 EVQAEQPSSSS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 EVQAEQPSSSSPR 13 0 Q9Y388;A0A1W2PP04 Q9Y388 RBMX2 "RNA-binding motif protein, X-linked 2" 1 EVQAEQPSSSS(1)PR;EVQAEQPSSS(0.09)S(0.909)PR;EVQAEQPSS(0.003)S(0.095)S(0.901)PR 269.05 8.12E-103 298032600 11096 11476.2 13996.1 11630.4 10839 10686.9 10378.1 12547.8 8421.1 12425.5 TRUE FALSE 11251.37823 12729.21033 10462.61145 10884.4782 12315.45531 12582.07166 12347.2903 11481.78607 9229.984281 9893.176279 1.137286744 1.286665674 1.057558377 1.100200572 1.244843411 1.271792932 1.248061285 1.160576315 0.932964704 1 13.27221807 -8.702335667 5.548491321 0.966629062 1.192618036 0.596780633 0.073138963 0.129875346 7.843302791 0.057084529 0.019884208 1.98E-09 8.702335667 0.225988974 EVRS(ph)PTKAPHLQLIEGK ddPTM_K562_Paclitaxel_30min_R1 2 EVRSPTKAPHLQLIEGK 17 2 H0Y5B0;E9PK52;E9PHY5;O43491-4;O43491;E9PII3;A0A2R8Y5B3;O43491-2;O43491-3 H0Y5B0 EPB41L2 Band 4.1-like protein 2 1 EVRS(0.608)PT(0.392)KAPHLQLIEGK;EVRS(0.808)PT(0.192)KAPHLQLIEGK 67.416 0.017745 95180000 6133.7 4973.5 13511.1 6977.8 4896 4153.3 3502 6663.1 6093.5 8171.8 TRUE FALSE 6219.590724 5516.523549 10100.0557 6530.275139 5562.91809 4889.82944 4166.486218 6097.028065 6678.807901 6506.382674 0.955921444 0.847863371 1.552330413 1.003672158 0.854993991 0.751543474 0.640369069 0.937084148 1.026500935 1 12.66763996 -6.616565198 4.75279766 0.849645309 1.11857652 0.233542309 0.201256101 0.297622474 11.56135253 0.06291084 0.082237636 2.42E-07 6.616565198 0.268931211 EVS(ph)PEVVR ddPTM_K562_Paclitaxel_30min_R1 3 EVSPEVVR 8 0 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 EVS(1)PEVVR;EVS(1)PEVVR;EVS(1)PEVVR 111.61 0.0081311 466444000 12596 12135.1 15821.1 13423.5 11179.7 10518.2 11082.2 12431.1 10940.9 12966.4 TRUE FALSE 12772.38286 13460.05126 11826.86763 12562.57679 12702.56441 12383.45509 13184.9896 11375.00046 11991.82233 10323.84056 1.237173587 1.303783333 1.145587978 1.216851105 1.23041075 1.199500807 1.277139987 1.101818688 1.161566014 1 13.33369215 -9.091528609 0.797558727 1.000914722 1.230079407 0.65756098 0.049584724 0.453255631 0.642197511 0.047348568 0.01733252 8.10E-10 9.091528609 0.229164685 EVS(ph)S(ph)RPSTPGLSVVSGISATSEDIPNKIEDLR ddPTM_K562_Paclitaxel_30min_R1 1 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Q14C86-4;Q14C86-2;Q14C86-6;F8W9S7;Q14C86-3;Q14C86-5;Q14C86;H0Y4E7;H0Y7I9;C9IZ08 Q14C86-4 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 2 EVS(0.505)S(0.505)RPS(0.481)T(0.432)PGLS(0.066)VVS(0.005)GIS(0.004)AT(0.001)S(0.001)EDIPNKIEDLR 61.89 0.00034278 34482000 2592.4 2078.7 3306.8 2718.7 2446.9 1768 2330.6 3150.7 1479.5 3813.9 TRUE FALSE 2628.701598 2305.659496 2471.957442 2544.33475 2780.209206 2081.529976 2772.819183 2883.028369 1621.612586 3036.625087 0.865665508 0.759283557 0.814047626 0.837882412 0.915558927 0.685474801 0.913125297 0.94941861 0.534018043 1 11.56825308 -11.76898885 2.86850114 1.040301376 0.814653399 0.189761827 0.118191212 89885330.26 74537161.4 25518229.52 0.027356033 1.70E-12 11.76898885 -0.225647977 EVS(ph)SRPST(ph)PGLSVVSGISATSEDIPNKIEDLR ddPTM_K562_Paclitaxel_30min_R1 1 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Q14C86-4;Q14C86-2;Q14C86-6;F8W9S7;Q14C86-3;Q14C86-5;Q14C86;H0Y4E7;H0Y7I9;C9IZ08 Q14C86-4 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 2 EVS(0.38)S(0.38)RPS(0.4)T(0.641)PGLS(0.193)VVS(0.005)GISATSEDIPNKIEDLR 63.297 0.00036193 29952000 882.08 660.47 1128.9 870.81 498.01 748.75 746.57 898.31 507.84 1120.7 TRUE FALSE 894.4318414 732.5823482 843.8952329 814.9601442 565.8473934 881.5302995 888.2277601 821.9929584 556.6203011 892.3007248 1.002388339 0.82100387 0.945752042 0.913324535 0.634144272 0.987929602 0.995435435 0.921206198 0.623803484 1 9.801386202 -5.245121222 22.44397177 0.872674704 1.002388759 0.080838149 0.132445145 2081.504094 2862700.592 0.03265153 0.71476734 5.69E-06 5.245121222 0.129714055 EVSPGS(ph)RDILDGVR ddPTM_K562_Paclitaxel_30min_R1 1 EVSPGSRDILDGVR 14 1 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 EVS(0.441)PGS(0.559)RDILDGVR 119.54 0.0038327 37463000 961.02 913.43 1452.4 1318.5 1021.4 1011.2 934.41 1252.6 833.93 1262.7 TRUE FALSE 974.477245 1013.161376 1085.723657 1233.937311 1160.531972 1190.522122 1111.70942 1146.183812 914.0327026 1005.361047 0.969280885 1.007758735 1.07993408 1.227357391 1.154343483 1.184173711 1.105781274 1.140071833 0.90915866 1 9.973497982 -8.757558618 24.99954151 0.954579303 1.112181771 0.396787565 0.075852186 99.20181528 639083.4835 0.061518616 0.021282859 1.75E-09 8.757558618 0.157602468 EVSSRPST(ph)PGLSVVSGISATSEDIPNKIEDLR ddPTM_K562_Paclitaxel_30min_R1 1 EVSSRPSTPGLSVVSGISATSEDIPNKIEDLR 32 2 Q14C86-4;Q14C86-2;Q14C86-6;F8W9S7;Q14C86-3;Q14C86-5;Q14C86;H0Y4E7;H0Y7I9;C9IZ08 Q14C86-4 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 EVS(0.132)S(0.132)RPS(0.132)T(0.591)PGLS(0.008)VVS(0.001)GIS(0.002)AT(0.001)S(0.001)EDIPNKIEDLR 66.925 0.0020051 16516000 934.4 823.64 1386 1083.4 693.67 652.12 649.84 934 338.75 844.37 TRUE FALSE 947.4844829 913.5678006 1036.087158 1013.915573 788.1595979 767.7643258 773.1437476 854.6508702 371.2884511 672.2869305 1.409345385 1.358895673 1.541138331 1.508158983 1.172355972 1.142018818 1.150020494 1.271259088 0.552276765 1 9.392933293 -7.69291591 0.694835898 0.882213892 1.458467045 0.591767385 0.175042035 0.525599996 0.511540104 0.148101521 0.102536146 2.03E-08 7.69291591 0.576253153 EVTGAVR ddPTM_K562_Paclitaxel_30min_R1 1 EVTGAVR 7 0 A0A2C9F2M8;Q8NG84 A0A2C9F2M8 OR2AK2 Olfactory receptor 2AK2 0 117.56 0.018884 94966000 3241.9 3209 4437 3238.7 1993.7 2919 3229.7 4113.1 2802.1 4508 FALSE TRUE 3287.296602 3559.369472 3316.824474 3030.984278 2265.275694 3436.643665 3842.518715 3763.666482 3071.254225 3589.267126 0.915868473 0.991670262 0.924095187 0.844457705 0.631124855 0.957477821 1.070558022 1.048589127 0.85567725 1 11.80947358 -7.509099021 24.92671602 1.000078462 0.863523767 0.27484589 0.102652583 902.115966 1631880.581 0.040070442 0.033896198 3.10E-08 7.509099021 -0.136554695 EVVECQST(ph)S(ph)T(ph)VGGQS(ph)VK ddPTM_K562_Paclitaxel_30min_R1 1 EVVECQSTSTVGGQSVK 17 0 Q96T23-3;Q96T23-2;Q96T23;H0YER1;H0YCN2 Q96T23-3 RSF1 Remodeling and spacing factor 1 4 EVVECQS(0.708)T(0.764)S(0.764)T(0.764)VGGQS(1)VK 70.41 0.023251 0 196.46 0 127.09 0 46.78 145.38 0 0 124.44 197.49 TRUE FALSE 199.2110461 0 95.00455767 0 53.15222799 171.1611018 0 0 136.393018 157.2414296 1.26691195 0 0.604195459 0 0.338029412 1.088524203 0 0 0.86741146 1 7.296837575 -8.930828135 8.048692556 0.999247506 0.398112108 0.187812025 0.437239824 0.341805328 32.95035263 0.406850817 0.105225812 1.17E-09 8.930828135 -0.601135398 EVVKPVPITS(ph)PAVSK ddPTM_K562_Paclitaxel_30min_R1 2 EVVKPVPITSPAVSK 15 1 Q96HC4;A0A0D9SFR4 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 1 EVVKPVPIT(0.038)S(0.962)PAVSK;EVVKPVPIT(0.067)S(0.932)PAVS(0.001)K 141.31 2.01E-06 144204000 11769.9 8635.6 21770.6 12739.5 8699.2 6704.5 7436.1 12266.8 9649 15792.3 TRUE FALSE 11934.71491 9578.464012 16274.34277 11922.44549 9884.178319 7893.448939 8847.061156 11224.65877 10575.82956 12573.82059 0.94917172 0.761778327 1.294303721 0.948195928 0.786091884 0.627768536 0.703609622 0.892700726 0.84109913 1 13.61813546 -6.698490554 4.962110841 0.788699393 0.998486414 0.243380937 0.154303745 0.276886212 13.35752084 0.047669916 0.061115883 2.00E-07 6.698490554 0.209787021 EVYELLDS(ph)PGKVLLQSK ddPTM_K562_Paclitaxel_30min_R1 2 EVYELLDSPGKVLLQSK 17 1 E9PBS1;P22234;P22234-2 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 1 EVYELLDS(1)PGKVLLQSK;EVYELLDS(1)PGKVLLQSK 95.227 0.0027372 24128000 5661.2 4356.3 11884.5 5715.1 4588.7 3831.8 3442.3 5771.5 4340.3 8470.7 TRUE FALSE 5740.474266 4831.935566 8884.110989 5348.559066 5213.758627 4511.315929 4095.458455 5281.17505 4757.205208 6744.36669 0.851150972 0.716440222 1.317263933 0.793040965 0.773053849 0.668901342 0.607241368 0.783049809 0.70535981 1 12.71946726 -6.503833676 24.89815835 0.738095678 0.956775869 0.220732539 0.171373467 1016.716749 1329182.794 0.04807001 0.070018038 3.13E-07 6.503833676 0.21868019 EVYQQQQYGS(ph)GGR ddPTM_K562_Paclitaxel_30min_R1 2 EVYQQQQYGSGGR 13 0 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 1 EVYQQQQYGS(1)GGR;EVYQQQQYGS(1)GGR 127.03 3.49E-10 31204000 3113.98 3330.5 3846.3 3705.3 3457 3374.9 3716.9 4115.7 2553.72 4390.3 TRUE FALSE 3157.585327 3694.135253 2875.253995 3467.658642 3927.901927 3973.391129 4422.162371 3766.045596 2799.016216 3495.55445 0.903314588 1.056809529 0.822545904 0.992019633 1.12368495 1.136698394 1.265081816 1.077381471 0.800735979 1 11.77130559 -6.573156744 5.676791424 1.083412924 0.935147693 0.198721587 0.123677911 0.298142254 21.43218072 0.038164785 0.050026003 2.67E-07 6.573156744 -0.148265231 EVYQQQQYGS(ph)GGRGNR ddPTM_K562_Paclitaxel_30min_R1 1 EVYQQQQYGSGGRGNR 16 1 Q99729-3;Q99729-4;D6R9P3;D6RD18;D6RBZ0;Q99729-2;Q99729 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 1 EVYQQQQYGS(1)GGRGNR 83.723 0.012359 15127000 1340.1 1180.7 1444.5 1202.8 1163.8 1138.9 1090.5 1339.5 1494.4 1052.9 TRUE FALSE 1358.865535 1309.612819 1079.81811 1125.657792 1322.329263 1340.867924 1297.416682 1225.701114 1637.943797 838.3184021 1.620942033 1.562190232 1.288076353 1.342756868 1.577359223 1.599473328 1.547641897 1.462094964 1.953844498 1 9.711354488 -6.798863442 24.98579231 1.551522638 1.44943992 0.012280509 0.235916172 629.9121509 420550.8768 0.070362171 0.079785122 1.59E-07 6.798863442 -0.102082718 EWNRDVQYR ddPTM_K562_Paclitaxel_30min_R1 1 EWNRDVQYR 9 1 A0A2U3TZN1;A0A087WWU9;A0A087WYR0;P09132-2;P09132 A0A2U3TZN1 SRP19 Signal recognition particle 19 kDa protein 0 63.216 0.029729 0 450.61 387.71 748.64 627 441.18 407.59 366.4 632.93 1250.9 701.63 FALSE TRUE 456.9199303 430.041489 559.6365729 586.7870263 501.2761852 479.8703637 435.9224873 579.1586459 1371.054534 558.6374209 0.817918588 0.7698043 1.001788552 1.05038976 0.897319382 0.859001466 0.780331698 1.036734426 2.454283374 1 9.125768407 -8.550398645 24.59811538 1.733265839 0.89017964 0.496013474 0.335927137 132.7748335 118675.2288 0.204306029 0.077224347 2.82E-09 8.550398645 -0.8430862 EWPVSSFNRPFPNS(ph)P ddPTM_K562_Paclitaxel_30min_R1 1 EWPVSSFNRPFPNSP 15 1 Q96H12 Q96H12 MSANTD3 Myb/SANT-like DNA-binding domain-containing protein 3 1 EWPVS(0.006)S(0.013)FNRPFPNS(0.981)P 95.236 0.024745 10039000 1034.7 802.51 1313.2 1121.1 1015.1 856.79 914.01 899.11 939.56 1049.7 TRUE FALSE 1049.188992 890.1307557 981.6664185 1049.197664 1153.373806 1008.729677 1087.438626 822.7249934 1029.808936 835.7705638 1.255355283 1.065042003 1.174564481 1.255365658 1.380012477 1.206945686 1.301120993 0.984390967 1.232167033 1 9.706963137 -8.255247148 24.99930659 1.081209249 1.230659617 0.357315404 0.099189992 596.9659299 2410087.24 0.049235188 0.027500674 5.56E-09 8.255247148 0.149450368 EWQHEEFYR ddPTM_K562_Paclitaxel_30min_R1 4 EWQHEEFYR 9 0 I3L239;I3L0K7;Q12931-2;Q12931 I3L239 TRAP1 "Heat shock protein 75 kDa, mitochondrial" 0 ;;; 142.36 0.0013224 71350000 8384.1 7924.5 9639.7 8306.2 6932.6 7734 8297 9932.5 7552.7 11622.9 FALSE TRUE 8501.503267 8789.723709 7206.038513 7773.477509 7876.93749 9105.516309 9871.312437 9088.672128 8278.170581 9254.1466 0.918669612 0.949814617 0.778682122 0.839999391 0.851179242 0.98393906 1.066690735 0.982118884 0.894536356 1 13.17588424 -7.267890663 22.02199384 0.989416589 0.86575172 0.50804866 0.057872576 89.00834901 303834.6895 0.021579137 0.019550482 5.40E-08 7.267890663 -0.12366487 EWSLESSPAQNWT(ph)PPQPR ddPTM_K562_Paclitaxel_30min_R1 3 EWSLESSPAQNWTPPQPR 18 0 F8VWH9;Q8N6T3-5;Q8N6T3;Q8N6T3-2;E5RHT6;E5RHC5;F8W1U7;Q8N6T3-3 F8VWH9 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 EWSLESSPAQNWT(1)PPQPR;EWSLES(0.003)S(0.012)PAQNWT(0.984)PPQPR;EWSLESS(0.008)PAQNWT(0.991)PPQPR 189.87 2.23E-12 83867000 1128.36 1331.38 1575.14 1500.64 1492.47 1498.48 1385.16 1836.73 1227.23 1631.56 TRUE FALSE 1144.160521 1476.744571 1177.476426 1404.395667 1695.769682 1764.214388 1647.986879 1680.688322 1345.110925 1299.047176 0.88076903 1.136790563 0.906415446 1.08109674 1.305394995 1.358083386 1.268612033 1.293785439 1.035459643 1 10.34323811 -6.575345656 5.045125304 1.234090912 0.990629974 0.404233927 0.126616192 0.180011787 9.838626138 0.036774263 0.048536007 2.66E-07 6.575345656 -0.243460938 EY(ph)LEQMETPQK ddPTM_K562_Paclitaxel_30min_R1 2 EYLEQMETPQK 11 0 A8MXQ7 A8MXQ7 Putative IQ motif and ankyrin repeat domain-containing protein LOC642574 1 EY(1)LEQMETPQK;EY(1)LEQMETPQK 110.84 0.0040668 40166000 871.05 1060.7 1056.45 1110.1 1031.908 1429.68 1148 1303.33 1204.99 1427.7 TRUE FALSE 883.2473874 1176.510813 789.7361315 1038.903155 1172.47134 1683.213674 1365.827007 1192.603981 1320.734674 1136.733956 0.777004489 1.034992231 0.694741392 0.913936941 1.031438652 1.480745486 1.201536208 1.049149605 1.161867881 1 10.15067893 -6.886351607 3.508616776 1.188710959 0.854844171 0.518641647 0.145689473 0.191183663 4.575579862 0.047513997 0.054896509 1.30E-07 6.886351607 -0.333866788 EYEEIQAVER ddPTM_K562_Paclitaxel_30min_R1 1 EYEEIQAVER 10 0 A0A590UJL3 A0A590UJL3 0 114.89 0.027133 178660000 1008 958.43 1397.6 1310.9 1028.6 992.15 1254.4 1200 918.77 1322.6 FALSE TRUE 1022.11511 1063.074629 1044.758595 1226.824741 1168.712734 1168.093872 1492.415852 1098.05251 1007.021964 1053.053394 0.970620403 1.009516359 0.992123097 1.165016654 1.109832361 1.109244677 1.417227142 1.042732036 0.956287658 1 10.04036287 -6.251283332 23.36140182 1.128335741 0.992629556 0.180133378 0.118185872 476.9865693 1097177.93 0.033388641 0.056848028 5.61E-07 6.251283332 -0.135706185 EYGS(ph)PLK ddPTM_K562_Paclitaxel_30min_R1 1 EYGSPLK 7 0 P21127;A0A0D9SEN2;A0A0D9SER5;A0A0D9SEI3;P21127-8;P21127-2;P21127-6;P21127-3;P21127-9;Q5QPR3;Q5QPR4;Q9UQ88;Q9UQ88-2;Q9UQ88-3;Q9UQ88-4;P21127-10;P21127-5;P21127-4;P21127-12;Q9UQ88-10;Q9UQ88-5 P21127 CDK11B;CDK11A Cyclin-dependent kinase 11B;Cyclin-dependent kinase 11A 1 EYGS(1)PLK 101.25 0.0097441 38751000 3817.6 3476.3 7245.3 5412.7 3990.6 3356.4 3070.6 4135.8 3339.8 5114.4 TRUE FALSE 3871.058178 3855.85419 5416.134406 5065.553648 4534.187281 3951.610414 3653.23032 3784.437975 3660.602713 4072.082473 0.950633541 0.946899827 1.330065008 1.243971281 1.113481201 0.970415123 0.897140553 0.929361819 0.898951025 1 11.99155107 -7.319390198 3.625874077 0.926951808 1.127650187 0.387520686 0.112152209 0.271534124 7.220525368 0.045585048 0.040722814 4.79E-08 7.319390198 0.200698379 EYIPGQPPLS(ph)QSS(ph)DSSPTR ddPTM_K562_Paclitaxel_30min_R1 1 EYIPGQPPLSQSSDSSPTR 19 0 V9GYZ6;P07814 V9GYZ6 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 2 EYIPGQPPLS(0.496)QS(0.288)S(0.581)DS(0.464)S(0.163)PT(0.007)R 156.83 5.42E-11 67159000 2858.5 3209.7 4606.2 3708 3368 3044.8 2840.4 3760.4 2300.1 4059.7 TRUE FALSE 2898.527819 3560.145901 3443.307841 3470.185476 3826.778621 3584.752529 3379.351072 3440.930548 2521.034882 3232.330912 0.896729914 1.101417521 1.065270833 1.073586081 1.183906823 1.109030179 1.045484254 1.064535359 0.779943314 1 11.65835919 -8.687576226 9.57088843 0.890560074 1.073620275 0.415244269 0.08403259 0.270836143 32.44730148 0.055464518 0.020833333 2.05E-09 8.687576226 0.183060201 EYIPGQPPLS(ph)QSSDSSPTRNSEPAGLETPEAK ddPTM_K562_Paclitaxel_30min_R1 1 EYIPGQPPLSQSSDSSPTRNSEPAGLETPEAK 32 1 V9GYZ6;P07814 V9GYZ6 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 1 EYIPGQPPLS(0.142)QS(0.142)S(0.142)DS(0.142)S(0.142)PT(0.142)RNS(0.142)EPAGLET(0.005)PEAK 54.732 0.0017071 33185000 1606.8 1423.7 2704.2 1819.6 1305.4 1365 1240.8 1896.9 1393.4 2398.9 TRUE FALSE 1629.300157 1579.144381 2021.491265 1702.899 1483.217581 1607.063584 1476.235323 1735.746505 1527.242296 1910.002863 0.853035453 0.826775923 1.058370803 0.891568821 0.776552543 0.841393286 0.772896916 0.908766441 0.799602098 1 10.89935909 EYIPGQPPLSQS(ph)SDS(ph)SPTR ddPTM_K562_Paclitaxel_30min_R1 1 EYIPGQPPLSQSSDSSPTR 19 0 V9GYZ6;P07814 V9GYZ6 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 2 EYIPGQPPLS(0.023)QS(0.977)S(0.309)DS(0.419)S(0.27)PT(0.002)R 209.73 1.10E-22 63830000 7802.7 7148 9797.3 8438.5 7155.4 6979 7116.1 8843 5547.3 9532.3 TRUE FALSE 7911.961873 7928.442813 7323.850444 7897.292379 8130.086622 8216.62766 8466.342826 8091.731954 6080.142951 7589.612028 1.042472506 1.044644019 0.964983509 1.040539668 1.071212414 1.082614978 1.115517209 1.06615884 0.801113803 1 12.88981042 -8.739078661 24.99918279 0.900556872 1.053464741 0.530363676 0.057575055 153.4485216 171555.8399 0.038889087 0.014674709 1.82E-09 8.739078661 0.152907869 EYIPGQPPLSQS(ph)SDSSPTR ddPTM_K562_Paclitaxel_30min_R1 1 EYIPGQPPLSQSSDSSPTR 19 0 V9GYZ6;P07814 V9GYZ6 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 1 EYIPGQPPLS(0.073)QS(0.224)S(0.224)DS(0.224)S(0.224)PT(0.03)R 79.013 0.0081222 57323000 556.78 465.56 781.73 609.21 632.68 377.75 433.39 548.55 298.57 713.32 TRUE FALSE 564.5766378 516.3914152 584.3725932 570.1379973 718.8617274 444.7386586 515.6234901 501.9472536 327.2489825 567.9449925 0.994069224 0.909227869 1.028924633 1.003861298 1.265724211 0.783066432 0.907875757 0.883795544 0.576198376 1 9.149607396 -7.321958864 24.99999597 0.827779844 1.030414612 0.383627266 0.132887438 275.3932684 113761.2113 0.046527877 0.041033737 4.76E-08 7.321958864 0.202634767 EYIPGQPPLSQSS(ph)DSSPTR ddPTM_K562_Paclitaxel_30min_R1 1 EYIPGQPPLSQSSDSSPTR 19 0 V9GYZ6;P07814 V9GYZ6 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 1 EYIPGQPPLS(0.001)QS(0.07)S(0.802)DS(0.091)S(0.036)PTR 218.64 1.10E-29 1024500000 4768.3 4702.1 6345.9 5953.7 5396.9 4237.9 4714.7 6271 2559.2 6321.2 TRUE FALSE 4835.070911 5215.491179 4743.79906 5571.85633 6132.04915 4989.432062 5609.289713 5738.239408 2805.022595 5032.93597 0.960685957 1.03627211 0.942551045 1.107078724 1.218384098 0.991356157 1.114516407 1.140137574 0.557333257 1 12.29718453 -8.741879771 24.99998859 0.778666387 1.064770185 0.443210391 0.127864026 178.8464956 228593.1917 0.082706314 0.031163314 1.81E-09 8.741879771 0.286103798 EYIPGQPPLSQSSDS(ph)SPTR ddPTM_K562_Paclitaxel_30min_R1 1 EYIPGQPPLSQSSDSSPTR 19 0 V9GYZ6;P07814 V9GYZ6 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 1 EYIPGQPPLSQS(0.129)S(0.202)DS(0.318)S(0.318)PT(0.033)R 129.89 2.26E-07 1088800000 5338.9 5453.3 6792.4 5742.1 5338.6 4868.3 5049.8 5987.5 2887.6 7279.5 TRUE FALSE 5413.661072 6048.709736 5077.574613 5373.827407 6065.807703 5731.624651 6007.973188 5478.824502 3164.966882 5795.933904 0.934044653 1.043612615 0.87605806 0.927171962 1.046562608 0.988904419 1.036584145 0.945287609 0.546066766 1 12.50082543 -8.551968582 24.94824361 0.763914304 0.979392785 0.335441402 0.11430347 203.1322017 174207.9998 0.070779062 0.026752783 2.81E-09 8.551968582 0.215478481 EYIPGQPPLSQSSDS(ph)SPTRNSEPAGLETPEAK ddPTM_K562_Paclitaxel_30min_R1 1 EYIPGQPPLSQSSDSSPTRNSEPAGLETPEAK 32 1 V9GYZ6;P07814 V9GYZ6 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 1 EYIPGQPPLS(0.044)QS(0.067)S(0.067)DS(0.231)S(0.231)PT(0.178)RNS(0.178)EPAGLET(0.004)PEAK 58.47 0.00062932 20922000 3066.2 2716.8 5185 3470.3 2695.3 2309.7 2131.4 3389.7 2744 3968.1 TRUE FALSE 3109.13626 3013.429412 3875.982623 3247.73049 3062.445492 2719.292865 2535.822023 3101.723827 3007.573461 3159.399042 0.984091031 0.953798293 1.22681009 1.027958307 0.969312661 0.860699402 0.802627965 0.981744878 0.951944791 1 11.62543445 -6.872975054 3.23913781 0.911472154 1.055172022 0.327879802 0.086276325 0.286047994 5.949629729 0.029476179 0.034370707 1.34E-07 6.872975054 0.143699868 EYRDLTTAGAVTQCYR ddPTM_K562_Paclitaxel_30min_R1 1 EYRDLTTAGAVTQCYR 16 1 M0R0P7;M0R3D6;M0R1A7;M0R117;Q02543 M0R0P7 RPL18A 60S ribosomal protein L18a 0 114.01 0.0062298 14733000 173.86 370.71 483.79 365.37 318.98 320.7 238.76 382.25 591.13 413.13 FALSE TRUE 176.2945764 411.1853715 361.6512311 341.9368035 362.4304764 377.5716421 284.0634636 349.7754766 647.9106777 328.9338792 0.53595749 1.25005479 1.099464828 1.039530511 1.101833831 1.147864863 0.863588343 1.063361054 1.969729233 1 8.361653799 -8.564665825 24.9798104 1.495426519 1.024306302 0.305120008 0.285104458 162.5633974 97175.67176 0.176424091 0.066682157 2.72E-09 8.564665825 -0.471120217 EYS(ph)PPYAPSHQQYPPSHATPLPK ddPTM_K562_Paclitaxel_30min_R1 2 EYSPPYAPSHQQYPPSHATPLPK 23 0 Q9UPT8 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 EY(0.23)S(0.53)PPY(0.203)APS(0.037)HQQYPPSHATPLPK;EYS(0.999)PPY(0.001)APSHQQYPPSHATPLPK 119.88 1.39E-06 35214000 5214.5 4745.5 9761.2 6193.6 4339.8 4262.6 4590.7 7401.6 4975 8697.4 TRUE FALSE 5287.519088 5263.629738 7296.864335 5796.370218 4930.954233 5018.51226 5461.76136 6772.787881 5452.870979 6924.865106 0.763555536 0.760105743 1.053719347 0.837037275 0.712065023 0.724709028 0.788717365 0.978038962 0.787433531 1 12.75757025 -9.512674964 0.792412858 0.999508242 0.81618721 0.204018012 0.104661272 3.061500886 3.089506539 0.118603546 0.038691431 3.07E-10 9.512674964 -0.183321032 EYVEPELHINDLWR ddPTM_K562_Paclitaxel_30min_R1 1 EYVEPELHINDLWR 14 0 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 0 101.2 0.013369 3250300 3082.8 3237.8 3054.5 2986.5 2845.3 2823.6 2504.5 3002.2 3461.2 3600.5 FALSE TRUE 3125.968711 3591.313954 2283.353697 2794.959257 3232.878031 3324.325815 2979.715801 2747.144371 3793.663725 2866.716124 1.090435389 1.252762324 0.79650499 0.974968967 1.127728694 1.159628534 1.039417812 0.958289643 1.323348236 1 11.48518333 -6.774001627 24.88822952 1.099128736 1.028091586 0.059889077 0.140995811 755.1533903 1496100.286 0.044732383 0.051075444 1.68E-07 6.774001627 -0.07103715 EYVSNDAAQS(ph)DDEEKLQSQPTDTDGGR ddPTM_K562_Paclitaxel_30min_R1 1 EYVSNDAAQSDDEEKLQSQPTDTDGGR 27 1 Q5JSH3-4;Q5JSH3-2;Q5JSH3;H7BY83 Q5JSH3-4 WDR44 WD repeat-containing protein 44 1 EYVSNDAAQS(0.891)DDEEKLQS(0.108)QPTDTDGGR 119.25 2.67E-12 45486000 888.64 774.73 1743.6 1244.7 802.45 854.03 521.64 1126.7 893.7 1479 TRUE FALSE 901.0837017 859.3176414 1303.406615 1164.870513 911.7572756 1005.480229 620.6184669 1030.979802 979.5438782 1177.578988 0.765200221 0.729732485 1.106852813 0.989207964 0.774264219 0.853853745 0.527029162 0.875507981 0.831828597 1 10.20160812 -6.788472074 24.94911245 0.792192066 0.900683319 0.067734474 0.149684343 524.2480798 483837.927 0.048170822 0.054634181 1.63E-07 6.788472074 0.108491254 EYVSNDAAQSDDEEKLQS(ph)QPTDTDGGR ddPTM_K562_Paclitaxel_30min_R1 1 EYVSNDAAQSDDEEKLQSQPTDTDGGR 27 1 Q5JSH3-4;Q5JSH3-2;Q5JSH3;H7BY83 Q5JSH3-4 WDR44 WD repeat-containing protein 44 1 EYVS(0.001)NDAAQS(0.126)DDEEKLQS(0.837)QPT(0.034)DT(0.002)DGGR 80.477 1.94E-05 36200000 1431.8 1401.9 2879.6 1777.3 1331.4 1234.9 1217.9 2095.5 1512.2 2356.7 TRUE FALSE 1451.849617 1554.964183 2152.609366 1663.311933 1512.759221 1453.892176 1448.990167 1917.474195 1657.453567 1876.403246 0.77374073 0.828694038 1.147199766 0.88643629 0.806201558 0.77482928 0.77221683 1.021888125 0.883314165 1 10.87375419 -8.272848777 24.85561648 0.964450852 0.861973706 0.179310193 0.109887148 1518.104382 3307201.419 0.06433212 0.031349265 5.34E-09 8.272848777 -0.102477146 FAELPEFRPEEVLPSPTLQSLATS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 FAELPEFRPEEVLPSPTLQSLATSPR 26 1 I3L2J0;A0A0A0MQR4;Q96RK0;I3L373;I3L135;I3L1Q4 I3L2J0 CIC Protein capicua homolog 1 FAELPEFRPEEVLPS(0.003)PT(0.002)LQS(0.02)LAT(0.373)S(0.602)PR 83.22 5.72E-05 32776000 593.67 521.45 495.42 742.31 496.23 471.34 742.01 729.71 537.15 880.75 TRUE FALSE 601.9832116 578.3836744 370.3450937 694.7015591 563.8249272 554.9255311 882.8025239 667.7165808 588.7456576 701.2526665 0.858439818 0.824786417 0.528119338 0.990657993 0.804025359 0.791334647 1.258893643 0.952176887 0.839562808 1 9.453790541 -7.634455801 22.13902401 1.011062533 0.797196721 0.342785788 0.144517855 4.590237703 888.967042 0.055556366 0.04303372 2.32E-08 7.634455801 -0.213865812 FAHGNAELHEWEERR ddPTM_K562_Paclitaxel_30min_R1 1 FAHGNAELHEWEERR 15 1 Q8IWR0;Q8IWR0-2 Q8IWR0 ZC3H7A Zinc finger CCCH domain-containing protein 7A 0 72.705 0.012776 5811500 953.61 927.61 992.33 1081 1050.6 782.83 941.22 1150.5 1016.5 1287.9 FALSE TRUE 966.9634821 1028.889597 741.8040185 1011.669498 1193.709507 921.653909 1119.811582 1052.757844 1114.139367 1025.425273 0.942987761 1.003378426 0.723411094 0.986585298 1.16411165 0.898801632 1.092046013 1.026654864 1.086514441 1 10.00200665 -6.51455775 24.99816239 1.044208426 0.893558882 0.359570466 0.092365838 421.4635962 1266174.63 0.026026531 0.035320668 3.06E-07 6.51455775 -0.150649544 FAIVMMGR ddPTM_K562_Paclitaxel_30min_R1 3 FAIVMMGR 8 0 A0A669KBL1;Q93009-3;Q93009 A0A669KBL1 USP7 Ubiquitin carboxyl-terminal hydrolase 7 0 ;; 94.151 0.0061567 17686100 244.021 68.957 449.21 213.991 212.87 126.13 56 0 0 0 FALSE TRUE 247.4380469 76.48595846 335.8013797 200.266575 241.8664979 148.4973845 66.62570766 0 0 0 0 FAS(ph)DDEHDEHDENGATGPVK ddPTM_K562_Paclitaxel_30min_R1 4 FASDDEHDEHDENGATGPVK 20 0 P05455 P05455 SSB Lupus La protein 1 FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK;FAS(1)DDEHDEHDENGATGPVK 149.64 1.30E-12 459767000 14699.8 12116.7 28330.3 16267.6 11555.5 10041.8 10619.7 16352.5 10291.7 19803.5 TRUE FALSE 14905.64255 13439.64228 21177.96538 15224.26895 13129.55474 11822.57224 12634.73264 14963.25306 11280.26377 15767.53583 0.945337478 0.852361614 1.343137292 0.965545226 0.832695412 0.749804685 0.801313076 0.94899122 0.715410695 1 13.94466959 -6.640102574 4.577609253 0.832835914 1.045476408 0.299633261 0.141505039 0.259884453 9.216291983 0.042737223 0.055666563 2.29E-07 6.640102574 0.212640494 FAS(ph)DDEHDEHDENGATGPVKR ddPTM_K562_Paclitaxel_30min_R1 5 FASDDEHDEHDENGATGPVKR 21 1 P05455 P05455 SSB Lupus La protein 1 FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR;FAS(1)DDEHDEHDENGATGPVKR 71.402 0.0027076 1814874000 11425.5 8563.9 21606.7 13092.9 9973.7 8195.67 8273.5 12360.1 11525.5 15194.8 TRUE FALSE 11585.49225 9498.935563 16151.82136 12253.18 11332.2868 9649.057002 9843.353434 11310.03236 12632.57577 12098.09142 0.957629749 0.785159843 1.335071855 1.01281926 0.936700377 0.797568531 0.813628621 0.934860877 1.044179229 1 13.56249185 -6.808891296 4.473398343 0.90428837 1.028613442 0.102560775 0.144194486 0.45000528 19.12291511 0.047320568 0.055760604 1.55E-07 6.808891296 0.124325072 FAS(ph)ENDLPEWK ddPTM_K562_Paclitaxel_30min_R1 2 FASENDLPEWK 11 0 C9JJ34;P43487-2;P43487;C9JIC6;C9JXG8;C9JDM3;C9JGV6;F6WQW2 C9JJ34 RANBP1 Ran-specific GTPase-activating protein 1 FAS(1)ENDLPEWK;FAS(1)ENDLPEWK 174.94 0.00028899 62053000 6716.4 5503.3 13150.6 8414.8 5590.8 5079.8 4667.2 7977.2 3703.9 9719.3 TRUE FALSE 6810.450322 6104.168905 9830.568385 7875.112391 6352.361613 5980.631206 5552.776836 7299.487068 4059.676144 7738.501325 0.880073549 0.788805047 1.270345248 1.017653427 0.820877499 0.772841013 0.717551965 0.943268827 0.52460754 1 12.91783848 -6.828057804 5.087388109 0.785612222 0.994918241 0.24391186 0.166192298 0.287288061 14.16351779 0.051899541 0.060059723 1.49E-07 6.828057804 0.209306019 FASAENIPDLPYDYSSSLES(ph)VADETSPEREGR ddPTM_K562_Paclitaxel_30min_R1 1 FASAENIPDLPYDYSSSLESVADETSPEREGR 32 1 P50747 P50747 HLCS Biotin--protein ligase;Biotin--[methylmalonyl-CoA-carboxytransferase] ligase;Biotin--[propionyl-CoA-carboxylase [ATP-hydrolyzing]] ligase;Biotin--[methylcrotonoyl-CoA-carboxylase] ligase;Biotin--[acetyl-CoA-carboxylase] ligase 1 FAS(0.001)AENIPDLPY(0.012)DY(0.021)S(0.024)S(0.032)S(0.081)LES(0.276)VADET(0.276)S(0.276)PEREGR 59.636 0.00065052 45856000 1343.9 1363.5 1861.5 1480.7 1557.4 1102.2 945.28 1427.7 1339.4 1576.7 TRUE FALSE 1362.718746 1512.371541 1391.541302 1385.734529 1769.544247 1297.659694 1124.641945 1306.407974 1468.055355 1255.367675 1.08551365 1.20472398 1.108473104 1.103847548 1.409582454 1.033688951 0.89586658 1.04065765 1.16942262 1 10.29389425 -7.480990443 24.99500931 1.020575057 1.179836935 0.347714579 0.105688636 565.5708147 337480.1605 0.037733397 0.033274479 3.30E-08 7.480990443 0.159261878 FASAENIPDLPYDYSSSLESVADETS(ph)PEREGR ddPTM_K562_Paclitaxel_30min_R1 1 FASAENIPDLPYDYSSSLESVADETSPEREGR 32 1 P50747 P50747 HLCS Biotin--protein ligase;Biotin--[methylmalonyl-CoA-carboxytransferase] ligase;Biotin--[propionyl-CoA-carboxylase [ATP-hydrolyzing]] ligase;Biotin--[methylcrotonoyl-CoA-carboxylase] ligase;Biotin--[acetyl-CoA-carboxylase] ligase 1 FASAENIPDLPY(0.001)DY(0.003)S(0.004)S(0.021)S(0.117)LES(0.117)VADET(0.215)S(0.522)PEREGR 97.61 1.15E-11 62724000 2538 2786.7 3104.8 3025.2 2601.7 2513.9 2281.3 2980.3 2272.1 3394.4 TRUE FALSE 2573.53983 3090.96133 2320.95484 2831.177212 2956.095587 2959.704868 2714.164766 2727.104913 2490.345357 2702.619417 0.952239081 1.143690936 0.858779755 1.04756785 1.093789073 1.095124548 1.004271911 1.009059913 0.921456177 1 11.40014265 -8.482760452 2.952576128 0.961444228 1.031693601 0.09743765 0.078146482 0.608972762 10.28729871 0.057115556 0.020907977 3.29E-09 8.482760452 0.070249373 FCDS(ph)PTSDLEMR ddPTM_K562_Paclitaxel_30min_R1 1 FCDSPTSDLEMR 12 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 FCDS(0.378)PT(0.244)S(0.378)DLEMR 108.68 0.0064462 94197000 2529 1845.5 3255.5 2869.5 2263.7 2382.9 2346.6 3079.6 2257.4 3152 TRUE FALSE 2564.413803 2046.997931 2433.608761 2685.463113 2572.054265 2805.473857 2791.8551 2817.968758 2474.233356 2509.62067 1.021833233 0.815660293 0.969711794 1.07006734 1.024877702 1.117887612 1.112460992 1.122866412 0.985899338 1 11.2932536 -6.137411154 3.674055564 1.070197448 0.913777723 0.444071036 0.065393811 0.187067146 4.516468991 0.017535754 0.03270125 7.29E-07 6.137411154 -0.156419725 FCDSPT(ph)SDLEMR ddPTM_K562_Paclitaxel_30min_R1 1 FCDSPTSDLEMR 12 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 FCDS(0.361)PT(0.56)S(0.078)DLEMR 246.63 1.53E-53 93489000 2747.6 2114 3068.4 2327.3 2423.9 2205.2 2297.7 2620.7 2198.2 3136.9 TRUE FALSE 2786.074877 2344.813669 2293.744471 2178.037395 2754.076217 2596.261257 2733.67658 2398.055177 2409.346932 2497.598058 1.115501699 0.938827471 0.918380146 0.872052806 1.102689926 1.039503234 1.094522224 0.960144555 0.964665601 1 11.28632561 -5.246123548 24.0696102 0.989364088 1.115501854 0.228819737 0.070247022 2974.291814 4674127.31 0.019121661 0.430508831 5.67E-06 5.246123548 0.126137766 FCFTPHTEEGCLSER ddPTM_K562_Paclitaxel_30min_R1 2 FCFTPHTEEGCLSER 15 0 A0A0U1RQF0;P49327 A0A0U1RQF0 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ; 195.87 7.41E-09 50931000 4934.3 4622.3 5447 5236.2 3931.3 4225 4586.4 5747.9 5270.7 5987.3 FALSE TRUE 5003.395424 5126.978346 4071.837482 4900.373568 4466.809617 4974.244428 5456.645457 5259.580018 5776.974285 4767.084974 1.049571269 1.075495481 0.854156682 1.027960189 0.937010698 1.043456212 1.144650345 1.103311572 1.2118463 1 12.21889163 -7.57491221 4.3200661 1.122618504 0.988160116 0.37774567 0.075875103 0.212925204 8.402924667 0.02922931 0.022646623 2.66E-08 7.57491221 -0.134458388 FDGSENRPFS(ph)PSPLNNISSTVTVK ddPTM_K562_Paclitaxel_30min_R1 2 FDGSENRPFSPSPLNNISSTVTVK 24 1 Q5UIP0-2;Q5UIP0 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 FDGSENRPFS(0.962)PS(0.037)PLNNIS(0.001)STVTVK;FDGS(0.003)ENRPFS(0.939)PS(0.046)PLNNIS(0.004)S(0.006)T(0.002)VTVK 106.47 2.75E-06 36753000 2101.04 2186.4 3402.1 2180.05 1884.94 1514.02 2119.9 2507.3 1850.62 3004.1 TRUE FALSE 2130.461042 2425.118546 2543.197778 2040.231351 2141.70074 1782.510189 2522.139958 2294.289215 2028.38032 2391.862771 0.890712071 1.013903714 1.063270773 0.852988464 0.895411211 0.745239322 1.054466832 0.959206039 0.848033735 1 11.2239189 -6.269383137 24.99173172 0.90501501 0.99175634 0.144832521 0.09037896 1113.613067 3503519.629 0.02584183 0.039148137 5.38E-07 6.269383137 0.08674133 FDIYDPFHPTDEAYS(ph)PPPAPEQK ddPTM_K562_Paclitaxel_30min_R1 4 FDIYDPFHPTDEAYSPPPAPEQK 23 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 FDIYDPFHPTDEAY(0.131)S(0.869)PPPAPEQK;FDIYDPFHPTDEAY(0.002)S(0.998)PPPAPEQK;FDIYDPFHPTDEAY(0.064)S(0.936)PPPAPEQK;FDIYDPFHPT(0.044)DEAY(0.274)S(0.682)PPPAPEQK 153.27 1.69E-18 424254000 14974 13001.9 25204.3 15952.6 11731.3 11257 11913.4 17175.2 15402.7 21564.4 TRUE FALSE 15183.6822 14421.49141 18841.16274 14929.47164 13329.30167 13253.27089 14173.90546 15716.05956 16882.19816 17169.56344 0.884337115 0.839945142 1.097358288 0.869531231 0.776333173 0.771904943 0.825525093 0.915344156 0.983263099 1 14.06756574 -8.651858861 3.095168465 0.995787743 0.867371878 0.251568024 0.085648661 0.40697021 7.272042233 0.080296808 0.02488906 2.23E-09 8.651858861 -0.128415865 FDLLWLIQDRPDRDNDLR ddPTM_K562_Paclitaxel_30min_R1 1 FDLLWLIQDRPDRDNDLR 18 2 P33993-3;P33993 P33993-3 MCM7 DNA replication licensing factor MCM7 0 66.673 0.018429 11787000 2735.2 2721.9 3291.2 3271.7 2847.1 2585.2 3014.2 3464.6 3041.1 4575.4 FALSE TRUE 2773.501239 3019.086247 2460.295855 3061.867806 3234.923222 3043.648922 3586.128715 3170.260605 3333.211243 3642.930969 0.761337852 0.828751978 0.675361646 0.840495698 0.888000143 0.835494537 0.98440754 0.870249981 0.914980622 1 11.83088394 -6.84679748 1.222003836 0.924507657 0.761204651 0.6066599 0.057744462 0.324900313 1.024133299 0.023861083 0.03170265 1.42E-07 6.84679748 -0.163303005 FDLSHGS(ph)PQMVR ddPTM_K562_Paclitaxel_30min_R1 1 FDLSHGSPQMVR 12 0 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 FDLS(0.001)HGS(0.999)PQMVR 97.291 0.0081479 31769000 4501.7 3708.2 6055 4911.4 3974.3 4469.5 3959.6 4938.8 2801.3 5616.1 TRUE FALSE 4564.737689 4113.073816 4526.340363 4596.404787 4515.666945 5262.10307 4710.91343 4519.218113 3070.377382 4471.535737 1.020843387 0.919834719 1.012256332 1.027925316 1.009869363 1.176799959 1.053533664 1.010663535 0.686649411 1 12.12655469 -4.863829 18.94577683 0.997774216 9.792647098 0.001287152 0.118096886 5358.966809 754247.0164 0.029008885 23763.12515 1.37E-05 4.863829 8.794872883 FDS(ph)PESHVGVAWR ddPTM_K562_Paclitaxel_30min_R1 2 FDSPESHVGVAWR 13 0 P0DN79;P35520;P35520-2 P0DN79 CBS Cystathionine beta-synthase 1 FDS(1)PESHVGVAWR;FDS(1)PESHVGVAWR 111.43 0.0031402 21844900 3075.7 3028.6 4108.2 3584.9 2620.7 2830.3 2904.6 3241.4 3060 3666.7 TRUE FALSE 3118.769289 3359.27279 3071.0341 3354.980559 2977.683709 3332.213966 3455.732687 2966.022838 3353.926672 2919.424527 1.068282211 1.150662659 1.051931321 1.149192427 1.019955707 1.141394112 1.183703382 1.015961471 1.148831436 1 11.5114683 -11.22788956 4.242138303 0.999945362 1.103016037 0.22666506 0.057252456 40276168.54 2.112706 21495.82324 0.012964198 5.92E-12 11.22788956 0.103070676 FDSPDLLLEAGDPAT(ph)SPCR ddPTM_K562_Paclitaxel_30min_R1 1 FDSPDLLLEAGDPATSPCR 19 0 A0A096LNM2;Q969U6-2;Q969U6 A0A096LNM2 FBXW5 F-box/WD repeat-containing protein 5 1 FDSPDLLLEAGDPAT(0.5)S(0.5)PCR 116.06 0.0003896 9257300 384.2 380.37 786.8 370.19 389.82 346.03 407.56 529.13 359.45 583.49 TRUE FALSE 389.5799854 421.9000829 588.162609 346.4476703 442.9200837 407.393562 484.8923824 484.1771038 393.9767786 464.5744177 0.838573909 0.908143167 1.26602453 0.74573127 0.95338888 0.876917769 1.043734575 1.042194932 0.84803804 1 8.859765903 -7.764664188 24.99949715 0.987008114 0.938164841 0.032302618 0.136040525 419.0533049 3248544.011 0.055585834 0.039238422 1.72E-08 7.764664188 -0.048843273 FDSPDLLLEAGDPATS(ph)PCR ddPTM_K562_Paclitaxel_30min_R1 1 FDSPDLLLEAGDPATSPCR 19 0 A0A096LNM2;Q969U6-2;Q969U6 A0A096LNM2 FBXW5 F-box/WD repeat-containing protein 5 1 FDSPDLLLEAGDPAT(0.009)S(0.991)PCR 181.72 1.08E-15 7811200 696.71 552.64 1112.5 1018.1 768.65 716.43 614.42 996.54 392.4 1155.7 TRUE FALSE 706.4660895 612.9791041 831.6356158 952.8036228 873.3531434 843.4788013 731.0029875 911.8777068 430.0917733 920.1677056 0.76775797 0.666160201 0.903787006 1.035467358 0.94912388 0.916657688 0.79442365 0.990990774 0.467405855 1 9.845753014 -5.768641549 24.96076993 0.887865445 0.716959077 0.153015962 0.155083562 254.7996509 883077.4563 0.039495324 0.085031918 1.70E-06 5.768641549 -0.170906368 FEEESKEPVADEEEEDS(ph)DDDVEPITEFR ddPTM_K562_Paclitaxel_30min_R1 7 FEEESKEPVADEEEEDSDDDVEPITEFR 28 1 P54105;E9PJF4 P54105 CLNS1A Methylosome subunit pICln 1 FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(1)DDDVEPITEFR;FEEESKEPVADEEEEDS(0.982)DDDVEPIT(0.018)EFR;FEEESKEPVADEEEEDS(0.999)DDDVEPIT(0.001)EFR;FEEES(0.005)KEPVADEEEEDS(0.995)DDDVEPITEFR 128.92 2.83E-15 2059083000 10941.85 9369.29 20716.6 12637.56 8357.31 8398.24 7540.03 11337.48 11077.66 15340.24 TRUE FALSE 11095.06966 10392.26077 15486.43811 11827.04347 9495.717112 9887.549947 8970.711331 10374.29031 12141.71874 12213.89067 0.908397656 0.850855886 1.267936527 0.968327275 0.777452277 0.809533196 0.734467957 0.849384573 0.994090996 1 13.57623522 -6.60719193 6.589262133 0.845420549 1.013180122 0.214070313 0.129072738 0.300738274 19.18441384 0.039391809 0.051017706 2.47E-07 6.60719193 0.167759573 FEELNADLFR ddPTM_K562_Paclitaxel_30min_R1 3 FEELNADLFR 10 0 P11142-2;P11142;E9PKE3;E9PN89;E9PNE6;A8K7Q2;P54652 P11142-2 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 ;; 178.84 0.0013819 96909500 8925.7 8184.1 10640.8 8881.8 7745.3 7848.9 8714.7 9593.1 7861.1 11645.8 FALSE TRUE 9050.687338 9077.667715 7954.398436 8312.161101 8800.340989 9240.792211 10368.26883 8778.106277 8616.193779 9272.379567 0.976091118 0.979000876 0.85785945 0.896443145 0.94909197 0.996593393 1.118188568 0.946694019 0.929232212 1 13.17872391 -7.167359541 3.816799038 1.002361497 0.926080916 0.255181264 0.057282949 0.352004956 9.437273492 0.021253612 0.021124111 6.80E-08 7.167359541 -0.076280581 FELLPTPPLS(ph)PSR ddPTM_K562_Paclitaxel_30min_R1 1 FELLPTPPLSPSR 13 0 A0A0B4J1R1;P01106;H0YBG3;H0YBT0;A0A087WUS5;P01106-2;P04198 A0A0B4J1R1 MYC;MYCN Myc proto-oncogene protein;N-myc proto-oncogene protein 1 FELLPT(0.146)PPLS(0.789)PS(0.065)R 98.942 0.0090522 3922900 1415.8 1608.1 1841.4 1647.8 1572.1 1314.1 1346.1 1941.7 1366 1708.5 TRUE FALSE 1435.625568 1783.677796 1376.515796 1542.117483 1786.246636 1547.137184 1601.515448 1776.740465 1497.210403 1360.306762 1.055368986 1.311232029 1.011915719 1.133654207 1.313120456 1.137344331 1.177319331 1.306132201 1.100641741 1 10.40971631 -4.968942553 15.91551276 1.174123146 0.684801228 0.078837348 0.109806993 7663330.525 109880260.9 0.02598852 101161574.1 1.07E-05 4.968942553 -0.489321919 FELLPTPPLS(ph)PSRR ddPTM_K562_Paclitaxel_30min_R1 2 FELLPTPPLSPSRR 14 1 A0A0B4J1R1;P01106;H0YBG3;H0YBT0;A0A087WUS5;P01106-2 A0A0B4J1R1 MYC Myc proto-oncogene protein 1 FELLPTPPLS(0.974)PS(0.026)RR;FELLPTPPLS(0.849)PS(0.151)RR 109.04 0.0021359 29762000 4580.4 4390.1 5427.4 5188.6 3844.9 3673.4 4160 4430 4456.5 5502.6 TRUE FALSE 4644.539732 4869.425964 4057.185745 4855.826419 4368.640475 4324.825913 4949.338283 4053.643849 4884.566737 4381.1671 1.06011472 1.111444931 0.926051359 1.108340839 0.997140802 0.987140142 1.129684892 0.925242922 1.114900808 1 12.09709953 FEPES(ph)PGFESR ddPTM_K562_Paclitaxel_30min_R1 3 FEPESPGFESR 11 0 H3BS42;Q9H5H4 H3BS42 ZNF768 Zinc finger protein 768 1 FEPES(1)PGFESR;FEPES(1)PGFESR;FEPES(1)PGFESR 184.96 0.00043199 280428000 8514.5 7915.7 11105.9 9450.9 7770.4 7613.2 7608.6 9799.6 6891.4 10729.9 TRUE FALSE 8633.729269 8779.962895 8302.078189 8844.761575 8828.860034 8963.294125 9052.29213 8967.062813 7553.349762 8543.14049 1.010603686 1.027720767 0.971782941 1.035305645 1.033444322 1.049180232 1.059597714 1.049621369 0.884142052 1 13.06055079 -8.745321629 24.99955067 0.942070994 1.029626729 0.5025368 0.034857091 165.2725801 256349.5783 0.023471286 0.00881088 1.80E-09 8.745321629 0.087555736 FERPDGSHFDVR ddPTM_K562_Paclitaxel_30min_R1 1 FERPDGSHFDVR 12 1 B4DEM9;Q9Y2S7 B4DEM9 POLDIP2 Polymerase delta-interacting protein 2 0 84.352 0.027138 8148600 2161 1951.3 2143.8 1575.9 1861.8 2036.9 1523.8 2344.8 1579.9 2793 FALSE TRUE 2191.260667 2164.349533 1602.571176 1474.828827 2115.408681 2398.115616 1812.933095 2145.594604 1731.656454 2223.785067 0.985374306 0.973272806 0.72065021 0.663206552 0.951264901 1.078393614 0.815246546 0.96483902 0.778697762 1 11.11880164 FES(ph)PESQASAEQPEM ddPTM_K562_Paclitaxel_30min_R1 3 FESPESQASAEQPEM 15 0 O75436 O75436 VPS26A Vacuolar protein sorting-associated protein 26A 1 FES(0.998)PES(0.001)QASAEQPEM;FES(1)PESQASAEQPEM;FES(0.776)PES(0.179)QAS(0.044)AEQPEM 194.59 7.90E-08 22997300 4513.63 4587.34 6539.69 5718.52 4470.12 4379.28 4398.43 5436.2 4901.83 6074.36 TRUE FALSE 4576.834746 5088.201295 4888.664378 5351.759722 5079.026024 5155.88382 5233.009131 4974.360878 5372.672673 4836.402098 0.946330486 1.05206333 1.010806025 1.10655806 1.050166202 1.066057725 1.082004562 1.028525085 1.110882132 1 12.23971848 -4.164334317 1.097512401 1.062695028 8.20E-16 0.46726694 0.03517062 13.02439514 1.972739549 0.009840914 27.8530235 6.85E-05 4.164334317 -1.062695028 FESPATGILS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 FESPATGILSPR 12 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 FESPATGILS(1)PR;FESPATGILS(1)PR 175.48 0.00034093 119139000 2436.9 2699.17 2530.27 2672.1 2186.27 2062.39 2719.1 2978.5 1724.26 3813.8 TRUE FALSE 2471.024118 2993.874509 1891.472045 2500.723466 2484.076988 2428.125909 3235.03503 2725.457834 1889.882877 3036.545467 0.813761607 0.985947532 0.622902593 0.823542243 0.818060199 0.7996343 1.0653669 0.897552124 0.622379246 1 11.56821526 FFDS(ph)EDEDFEILSL ddPTM_K562_Paclitaxel_30min_R1 4 FFDSEDEDFEILSL 14 0 Q9Y4P1-4;Q9Y4P1 Q9Y4P1-4 ATG4B Cysteine protease ATG4B 1 FFDS(1)EDEDFEILSL;FFDS(1)EDEDFEILSL;FFDS(1)EDEDFEILSL;FFDS(1)EDEDFEILSL 308.12 8.67E-196 173999000 29118.5 28650.3 35087.9 31407.7 27319.1 25488.7 28394.2 34337.5 30802.2 38183 TRUE FALSE 29526.24884 31778.43664 26229.52568 29393.3507 31040.42394 30008.76307 33781.85122 31420.31505 33760.88894 30401.28364 0.971217176 1.045299173 0.862776914 0.966845711 1.021023464 0.987088684 1.111198186 1.033519355 1.110508666 1 14.89184462 -7.337739955 1.59561123 1.064617443 0.964134465 0.367303849 0.055062944 0.406038307 2.057536679 0.024624437 0.021108068 4.59E-08 7.337739955 -0.100482978 FFEHFIEGGR ddPTM_K562_Paclitaxel_30min_R1 1 FFEHFIEGGR 10 0 F5H3F0;J3KR44;F5H6Q1;F5GYJ8;Q96FW1;F5GYN4;Q96FW1-2 F5H3F0 OTUB1 Ubiquitin thioesterase OTUB1 0 94.616 0.028106 8374600 3145.3 3147.4 3809.9 3420.6 3019.8 3121.4 2896.1 3675.8 3404.8 4300 FALSE TRUE 3189.343904 3491.043776 2848.043625 3201.218026 3431.147886 3674.936463 3445.619856 3363.517846 3731.846253 3423.65764 0.931560407 1.019682498 0.831871619 0.935028663 1.002187791 1.073394846 1.00641484 0.982434052 1.090017357 1 11.74132273 -6.830449575 3.992136246 1.028517367 0.928479236 0.457872408 0.051949619 0.209209722 6.561704956 0.016538057 0.019429803 1.48E-07 6.830449575 -0.100038132 FFQGS(ph)QEFLASASASAER ddPTM_K562_Paclitaxel_30min_R1 1 FFQGSQEFLASASASAER 18 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 FFQGS(1)QEFLASASASAER 89.483 0.0025297 868690 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 FFQGSQEFLAS(ph)ASASAER ddPTM_K562_Paclitaxel_30min_R1 1 FFQGSQEFLASASASAER 18 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 FFQGS(0.038)QEFLAS(0.962)ASASAER 149.23 9.84E-10 56312000 1148.4 1101.6 1251.6 1331.8 1005.1 1048.4 1038.5 1363.7 973.04 1115.8 TRUE FALSE 1164.481143 1221.876413 935.6181004 1246.384309 1142.011636 1234.31902 1235.549954 1247.845173 1066.50484 888.3993475 1.310763168 1.375368427 1.053150369 1.402955003 1.285471044 1.389374073 1.390759637 1.40459938 1.200479089 1 9.795064523 -9.039381812 5.240718104 1.000096535 1.323873377 0.506606339 0.099613044 0.18019804 17.28286484 0.096854469 0.025211315 9.13E-10 9.039381812 0.323776842 FFTFDSPAELPS(ph)RTPR ddPTM_K562_Paclitaxel_30min_R1 1 FFTFDSPAELPSRTPR 16 1 Q9NXH8 Q9NXH8 TOR4A Torsin-4A 1 FFTFDS(0.001)PAELPS(0.552)RT(0.447)PR 73.688 0.023635 7454100 3043 2734.6 2978.4 2814.7 2106.7 2686.8 2714.4 2658.2 2698.9 3176.6 TRUE FALSE 3085.611388 3033.172876 2226.466084 2634.17774 2393.668207 3163.266255 3229.44323 2432.369318 2958.141404 2529.207176 1.219991552 1.19925837 0.880301979 1.041503347 0.946410491 1.250694797 1.276859903 0.961712168 1.169592365 1 11.3044695 -7.259770884 24.99961038 1.138446857 1.054636723 0.072275775 0.131782454 439.5174949 6585469.906 0.046735565 0.04449431 5.50E-08 7.259770884 -0.083810134 FFTT(ph)PSK ddPTM_K562_Paclitaxel_30min_R1 2 FFTTPSK 7 0 O76021;O76021-2 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 FFT(0.032)T(0.968)PSK;FFT(0.04)T(0.959)PS(0.001)K 134.05 0.00013893 261730000 23503.2 20191.4 36175 26623 19998.7 18427.6 15712.6 20859.8 18515.6 21929.8 TRUE FALSE 23832.31731 22395.96533 27042.17384 24915.51994 22722.86152 21695.47612 18693.98382 19087.62979 20294.10611 17460.49472 1.364927953 1.282664993 1.548763324 1.426965291 1.301387039 1.242546472 1.070644568 1.093189517 1.162287005 1 14.09180682 -7.386134977 1.653700996 1.085981551 1.403665649 0.784111112 0.075565546 0.17989636 0.979579521 0.035635091 0.029528844 4.11E-08 7.386134977 0.317684098 FGDES(ph)PLLTMR ddPTM_K562_Paclitaxel_30min_R1 1 FGDESPLLTMR 11 0 H0YJ41;Q9P203-5;Q9P203 H0YJ41 BTBD7 BTB/POZ domain-containing protein 7 1 FGDES(1)PLLTMR 158.86 0.00069837 3097100 1119.2 855.02 1489.9 1007.1 990.22 918.37 818.87 1235.4 833.31 1073.8 TRUE FALSE 1134.872253 948.3739751 1113.756318 942.5091136 1125.104729 1081.230025 974.2463077 1130.445059 913.3531488 854.9589706 1.327399667 1.109262558 1.302701482 1.102402742 1.315975114 1.264657208 1.139524049 1.322221414 1.068300562 1 9.739711377 -8.928922402 5.63668278 1.001103072 1.229030382 0.48337717 0.084399505 0.140965095 7.361729439 0.074430558 0.019353733 1.18E-09 8.928922402 0.22792731 FGDFLQHS(ph)PSILQSK ddPTM_K562_Paclitaxel_30min_R1 2 FGDFLQHSPSILQSK 15 0 Q96Q89-5;Q96Q89-3;Q96Q89;Q96Q89-2 Q96Q89-5 KIF20B Kinesin-like protein KIF20B 1 FGDFLQHS(0.987)PS(0.013)ILQSK;FGDFLQHS(0.851)PS(0.144)ILQS(0.004)K 112.91 0.0012682 46594000 6017.7 5327.5 10752.9 6772.8 5071.3 5509.1 4677.5 6832.3 4443 9124.4 TRUE FALSE 6101.966366 5909.174466 8038.197405 6338.422922 5762.096918 6486.061533 5565.031207 6251.853469 4869.770002 7264.842272 0.839931018 0.81339336 1.106451744 0.872479083 0.793148248 0.892801425 0.766022303 0.860562864 0.670320128 1 12.82671576 -6.522182395 24.49265316 0.824253563 0.922637698 0.119051751 0.108406749 37.71453361 1326582.693 0.031114223 0.040678955 3.00E-07 6.522182395 0.098384134 FGEYNSNMS(ph)PEEK ddPTM_K562_Paclitaxel_30min_R1 3 FGEYNSNMSPEEK 13 0 E9PFK5;P78316-2;P78316 E9PFK5 NOP14 Nucleolar protein 14 1 FGEYNS(0.003)NMS(0.997)PEEK;FGEYNS(0.007)NMS(0.993)PEEK;FGEYNS(0.025)NMS(0.975)PEEK 184 1.19E-82 83174000 6851.7 4973.7 12990.8 8001.5 4955.8 4695.1 4709 6896.3 6264.7 9404.6 TRUE FALSE 6947.644939 5516.745386 9711.111872 7488.319603 5630.863862 5527.710063 5602.508167 6310.41627 6866.452426 7487.937358 0.92784496 0.736751007 1.29690079 1.000051048 0.751991315 0.738215319 0.748204465 0.842744266 0.917001852 1 12.87035265 -6.749513675 24.77054949 0.816181788 0.994164003 0.206338416 0.148937367 302.94918 629243.9651 0.045456107 0.058203136 1.78E-07 6.749513675 0.177982214 FGGQPCQGVPGSAPCGQAGDTWS(ph)PDLHPVGGGR ddPTM_K562_Paclitaxel_30min_R1 1 FGGQPCQGVPGSAPCGQAGDTWSPDLHPVGGGR 33 0 Q14153-2;Q14153 Q14153-2 FAM53B Protein FAM53B 1 FGGQPCQGVPGS(0.022)APCGQAGDT(0.191)WS(0.787)PDLHPVGGGR 66.381 2.18E-05 0 346.5 303.79 401.13 424.56 102.03 311.22 314.98 429.89 228.41 464.19 TRUE FALSE 351.352069 336.9588196 299.8597704 397.3306219 115.9282134 366.4104973 374.7458107 393.3681612 250.3498011 369.5878232 0.950659213 0.911715155 0.811335633 1.075064158 0.31366892 0.991403056 1.013956054 1.064342861 0.677375675 1 8.529773415 FGGS(ph)GSQVDSAR ddPTM_K562_Paclitaxel_30min_R1 1 FGGSGSQVDSAR 12 0 Q13200;Q13200-3;Q13200-2 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 1 FGGS(0.491)GS(0.491)QVDS(0.017)AR 98.654 0.010439 9737600 707.46 511.93 627.22 636.51 532.14 403.89 558.73 472.49 480.03 719.71 TRUE FALSE 717.3666227 567.8242486 468.8705536 595.6870975 604.6264772 475.5142206 664.7461007 432.3490253 526.1390263 573.0327069 1.251877273 0.990910714 0.818226513 1.039534202 1.055134323 0.829820383 1.160049143 0.754492754 0.918165787 1 9.162473676 -5.281288302 4.173834782 0.946466393 1.271391355 0.375686298 0.117039242 0.205699465 7.918906463 0.028424514 0.192635332 5.23E-06 5.281288302 0.324924962 FGIHVYQFPECDS(ph)DEDEDFKQQDR ddPTM_K562_Paclitaxel_30min_R1 1 FGIHVYQFPECDSDEDEDFKQQDR 24 1 G3XAH0;Q99719-2;H7C299;E7EQM7;C9JM82;E7EPG2;B4DJ62;E7EX32;Q99719 G3XAH0 5-Sep Septin-5 1 FGIHVYQFPECDS(1)DEDEDFKQQDR 55.337 0.011675 24246000 1685.3 1359 2250.7 1356.7 1056.8 1033.1 1195.2 1846 753.33 2414.3 TRUE FALSE 1708.8994 1507.380216 1682.482949 1269.687334 1200.754052 1216.30578 1421.982961 1689.170778 825.6907125 1922.264335 0.889003333 0.78416906 0.875260971 0.660516512 0.624656053 0.63274637 0.739743715 0.878740112 0.429540671 1 10.90859102 -6.259972409 24.98318989 0.698904855 0.84294692 0.157697831 0.146699561 229.5001209 3908460.775 0.038393647 0.062154913 5.50E-07 6.259972409 0.144042065 FGQAATMEGIGAIGGT(ph)PPAFNR ddPTM_K562_Paclitaxel_30min_R1 10 FGQAATMEGIGAIGGTPPAFNR 22 0 Q15233-2;Q15233 Q15233-2 NONO Non-POU domain-containing octamer-binding protein 1 FGQAATMEGIGAIGGT(1)PPAFNR;FGQAAT(0.067)MEGIGAIGGT(0.933)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR;FGQAATMEGIGAIGGT(1)PPAFNR 187.04 5.17E-23 704098900 10499.4 10606.8 13903.25 11073.16 8976.25 9568.85 10610.63 12539.36 11428.98 14932.15 TRUE FALSE 10646.42399 11764.88629 10393.20258 10362.97708 10198.96722 11265.75119 12623.94165 11474.0631 12526.7846 11888.96963 0.895487525 0.989563154 0.874188673 0.871646358 0.85785123 0.947580113 1.061819656 0.965101557 1.053647623 1 13.53733607 -7.552809114 5.823776081 1.016508246 0.9001458 0.652575223 0.042038523 0.118525893 11.72502295 0.016495278 0.012922362 2.80E-08 7.552809114 -0.116362446 FGSTGST(ph)PPVS(ph)PTPSER ddPTM_K562_Paclitaxel_30min_R1 2 FGSTGSTPPVSPTPSER 17 0 E7ER32;A0A087X287;A0A494BZX7;W0Z7M9;A0A499FIJ6;Q969V6;A0A087WU73;B0QY83 E7ER32 MKL1;mkl1 MKL/myocardin-like protein 1 2 FGS(0.055)T(0.022)GS(0.002)T(0.921)PPVS(0.935)PT(0.064)PS(0.001)ER;FGS(0.001)TGS(0.003)T(0.995)PPVS(0.994)PT(0.005)PSER 167.18 9.91E-08 31887000 5418.7 5328.3 6719.4 6090.6 5444.8 4643.1 4960.7 5489.2 5295.9 5989 TRUE FALSE 5494.578518 5910.061813 5023.004366 5699.976177 6186.473941 5466.488593 5901.966928 5022.858197 5804.594858 4768.438513 1.152280459 1.239412398 1.053385579 1.195354865 1.297379409 1.146389657 1.237714802 1.053354926 1.217294685 1 12.2193012 -11.34676991 4.652341631 0.999838686 1.176490941 0.334146715 0.074934591 0.000122293 1.72E-05 0.070768524 0.017148266 4.50E-12 11.34676991 0.176652255 FGTSHMMVSFR ddPTM_K562_Paclitaxel_30min_R1 1 FGTSHMMVSFR 11 0 A0A1B0GU80;Q96N23-2;Q96N23 A0A1B0GU80 CFAP54 Cilia- and flagella-associated protein 54 0 94.114 0.0056571 9111600 907.82 732.45 1063.4 858.64 609.02 672.54 849.06 1018.9 655.8 888.49 FALSE TRUE 920.5322809 812.421368 794.931518 803.5706735 691.9788348 791.8055261 1010.164703 932.3380852 718.7925202 707.4152503 1.301261572 1.148436322 1.123712724 1.135925008 0.978179131 1.119293832 1.427965685 1.317950221 1.016082873 1 9.46641351 FHALSSPQS(ph)PFPSTPTSR ddPTM_K562_Paclitaxel_30min_R1 1 FHALSSPQSPFPSTPTSR 18 0 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 FHALSSPQS(1)PFPSTPTSR 96.467 0.00097581 18127000 1858.7 1745.3 2174.1 2136.9 1530.3 1606.7 1519.5 1735.2 1681.9 2230 TRUE FALSE 1884.727535 1935.857756 1625.221566 1999.848798 1738.752768 1891.625686 1807.817193 1587.783929 1843.45401 1775.524776 1.061504497 1.090301742 0.915347163 1.126342378 0.979289499 1.065389631 1.018187534 0.89426177 1.03825868 1 10.79402978 -8.015415478 24.60091794 0.971001061 1.03789095 0.154316832 0.064489439 948.8124244 1514165.389 0.027601227 0.016630093 9.65E-09 8.015415478 0.066889889 FHDFDHRDR ddPTM_K562_Paclitaxel_30min_R1 1 FHDFDHRDR 9 1 Q15424-2;Q15424;Q15424-3;Q15424-4;K7EII0;Q14151 Q15424-2;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 0 132.76 0.0038366 2206800 1246.1 1214.7 1674.7 1350.5 950.96 1153.3 1107 1024.1 1610.5 1057.1 FALSE TRUE 1263.549245 1347.325054 1251.901273 1263.884975 1080.496852 1357.821562 1317.047471 937.0963128 1765.195721 841.6624397 1.501254167 1.600790282 1.487414922 1.501653056 1.283765083 1.613261443 1.564816735 1.113387349 2.097272775 1 9.717097926 -11.98751191 2.716402361 0.525178502 1.513409891 0.302966499 0.239762528 69040658.83 66075218.29 205945964.5 0.054729398 1.03E-12 11.98751191 0.988231389 FHDRPVT(ph)YLYNT(ph)LHY(ph)YEMHLR ddPTM_K562_Paclitaxel_30min_R1 1 FHDRPVTYLYNTLHYYEMHLR 21 1 Q5JWT2;Q9ULK4-4;Q9ULK4-5;Q9ULK4-3;Q9ULK4 Q5JWT2 MED23 Mediator of RNA polymerase II transcription subunit 23 3 FHDRPVT(0.381)Y(0.338)LY(0.281)NT(0.976)LHY(0.512)Y(0.512)EMHLR 55.33 0.019808 33185000 54.264 122.34 58.626 111.02 0 125.81 0 0 66.436 0 TRUE FALSE 55.02386342 135.6974949 43.82514122 103.8996741 0 148.120637 0 0 72.81747464 0 0 FHDRPVTY(ph)LYNT(ph)LHY(ph)YEMHLR ddPTM_K562_Paclitaxel_30min_R1 1 FHDRPVTYLYNTLHYYEMHLR 21 1 Q5JWT2;Q9ULK4-4;Q9ULK4-5;Q9ULK4-3;Q9ULK4 Q5JWT2 MED23 Mediator of RNA polymerase II transcription subunit 23 3 FHDRPVT(0.241)Y(0.383)LY(0.384)NT(0.989)LHY(0.501)Y(0.501)EMHLR 42.806 0.025573 26041000 178.61 156.79 235.16 121.8 114.24 155.56 247.41 218.21 0 144.43 TRUE FALSE 181.1110911 173.9088624 175.7909496 113.9882932 129.8014221 183.1463818 294.3547559 199.6716985 0 114.9950867 1.574946341 1.51231559 1.528682265 0.991244899 1.128756243 1.592645278 2.559715935 1.736349823 0 1 6.845428412 -8.75016039 24.99975556 0.499999926 1.572911079 0.476582798 0.451899107 173.9900708 385652.7655 0.335539849 0.124294968 1.78E-09 8.75016039 1.072911154 FHDTSS(ph)PLMVTPPSAEAHWAVR ddPTM_K562_Paclitaxel_30min_R1 4 FHDTSSPLMVTPPSAEAHWAVR 22 0 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 FHDT(0.055)S(0.199)S(0.746)PLMVTPPSAEAHWAVR;FHDT(0.009)S(0.037)S(0.954)PLMVTPPSAEAHWAVR;FHDT(0.011)S(0.147)S(0.842)PLMVTPPSAEAHWAVR;FHDT(0.053)S(0.18)S(0.767)PLMVTPPSAEAHWAVR 145.83 1.76E-17 94497000 4573.61 4827.53 6722.6 5925.91 5050.02 5296.75 6220.31 7150.5 3500.7 8737.8 TRUE FALSE 4637.654651 5354.616051 5025.396486 5545.848656 5737.918222 6236.054242 7400.58135 6543.020393 3836.957877 6957.031564 0.666614002 0.76966965 0.722347806 0.797157323 0.8247653 0.896367105 1.063755609 0.940490256 0.551522275 1 12.76425615 -6.697462953 1.615296339 0.894727659 0.722345051 0.24453975 0.129001348 0.570023186 3.076007344 0.047212511 0.067358381 2.01E-07 6.697462953 -0.172382609 FHFPPLDTHS(ph)PTNDVQPGR ddPTM_K562_Paclitaxel_30min_R1 2 FHFPPLDTHSPTNDVQPGR 19 0 P41162 P41162 ETV3 ETS translocation variant 3 1 FHFPPLDT(0.003)HS(0.906)PT(0.091)NDVQPGR;FHFPPLDT(0.104)HS(0.81)PT(0.086)NDVQPGR 82.56 0.0036262 17087700 2265.27 2474.1 2624.9 2357.88 1950.63 1831.2 1876.35 2503.65 2202.25 2928.4 TRUE FALSE 2296.990769 2744.230605 1962.211531 2206.65613 2216.33883 2155.937609 2232.377617 2290.949305 2413.785952 2331.590473 0.985160471 1.176977963 0.841576406 0.946416687 0.950569517 0.92466393 0.957448421 0.982569337 1.035252966 1 11.1870987 -5.757284956 24.99999999 0.952755705 1.081069178 0.380102209 0.064452057 99.61919134 599454.899 0.01599175 0.039285797 1.75E-06 5.757284956 0.128313473 FHLETSWAEAS(ph)NDL ddPTM_K562_Paclitaxel_30min_R1 1 FHLETSWAEASNDL 14 0 A0A0C4DFW0;Q5VVW2-2 A0A0C4DFW0 GARNL3 1 FHLET(0.002)S(0.002)WAEAS(0.996)NDL 85.536 0.022007 9967700 0 59.306 150.52 0 49.63 0 0 0 0 0 TRUE FALSE 0 65.78122964 112.5193644 0 56.39044624 0 0 0 0 0 0 FHVEEEGK ddPTM_K562_Paclitaxel_30min_R1 1 FHVEEEGK 8 0 P00558;P00558-2;P07205 P00558;P07205 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 0 90.657 0.020978 0 2306.9 2585.4 4112.8 2900.6 2740 2406.2 2230.4 2689.2 1733.5 3408.1 FALSE TRUE 2339.203717 2867.682715 3074.472774 2714.568499 3113.234389 2832.905785 2653.606757 2460.735675 1900.01042 2713.527349 0.862052751 1.056809955 1.133017058 1.000383689 1.147301644 1.043993821 0.977917822 0.906840196 0.700199473 1 11.40595373 -8.196318519 2.4006493 0.843287112 1.046976518 0.366107199 0.100611238 0.29601983 3.283098469 0.061556978 0.028335037 6.36E-09 8.196318519 0.203689407 FICEQDHQNFLR ddPTM_K562_Paclitaxel_30min_R1 1 FICEQDHQNFLR 12 0 A0A0A0MSM0;Q92598-2;Q92598-3;Q92598;Q92598-4 A0A0A0MSM0 HSPH1 Heat shock protein 105 kDa 0 120.57 0.0052868 4404500 1088.9 1024 989.56 997.15 974.12 814.15 998.55 1197.8 1008.3 1212.2 FALSE TRUE 1104.14796 1135.803783 739.7333393 933.1972621 1106.811636 958.5280713 1188.01965 1096.039414 1105.15172 965.1529746 1.144013424 1.176812187 0.766441547 0.966890521 1.146773273 0.993135903 1.230913317 1.135612118 1.145053426 1 9.914613814 -7.310561 1.706658955 1.13066401 1.018729496 0.082936923 0.125664157 0.837310231 4.826595306 0.057216486 0.050294884 4.89E-08 7.310561 -0.111934514 FICVTPTTCSNTIDLPMS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 FICVTPTTCSNTIDLPMSPR 20 0 G8JLH9;P40763-2;P40763 G8JLH9 STAT3 Signal transducer and activator of transcription;Signal transducer and activator of transcription 3 1 FICVTPTTCSNTIDLPMS(1)PR;FICVTPTTCSNTIDLPMS(1)PR 176.14 1.16E-14 98211000 4236.5 4144.6 4144.5 3975.1 2913.92 2892.7 4297.6 4878 3815.1 6056.8 TRUE FALSE 4295.824071 4597.121444 3098.169716 3720.154878 3310.845237 3405.679729 5113.047165 4463.583452 4181.557401 4822.420835 0.890802403 0.953280852 0.64245113 0.771428916 0.686552532 0.706217861 1.060265651 0.925589783 0.867107526 1 12.23554184 -7.754466785 24.99999973 0.957039894 0.772996109 0.466470374 0.098455737 161.8761373 580403.4755 0.040993755 0.03105021 1.76E-08 7.754466785 -0.184043785 FIHQQPQSS(ph)SPVYGSSAK ddPTM_K562_Paclitaxel_30min_R1 1 FIHQQPQSSSPVYGSSAK 18 0 A0A1B0GTU4;A0A1B0GU60;F5H836;F5GZ78;P49023-2;P49023;P49023-3 A0A1B0GTU4 PXN Paxillin 1 FIHQQPQS(0.081)S(0.459)S(0.459)PVYGSSAK 68.676 0.020163 53280000 1676.8 1735.7 2529.8 1888 1588.8 1445 1244.7 1940.7 1832.1 2491.9 TRUE FALSE 1700.280373 1925.209596 1891.120702 1766.91213 1805.221459 1701.250461 1480.875327 1775.825422 2008.081391 1984.049412 0.856974813 0.970343573 0.953162099 0.890558531 0.909867188 0.857463756 0.746390346 0.895051006 1.012112591 1 10.95423224 -8.743780731 7.023720501 1.006722257 0.88531729 0.412246249 0.057863656 0.151039031 33.22088697 0.048130166 0.016375757 1.80E-09 8.743780731 -0.121404967 FIIGSVSEDNS(ph)EDEISNLVK ddPTM_K562_Paclitaxel_30min_R1 2 FIIGSVSEDNSEDEISNLVK 20 0 A0A0C4DGT1;Q13085;A0A087X2F8;A0A087X126;Q13085-4;A0A087WYK6 A0A0C4DGT1 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 FIIGSVSEDNS(1)EDEISNLVK;FIIGSVS(0.005)EDNS(0.994)EDEISNLVK 135.95 4.05E-10 15441400 5190.1 4680.4 7995.9 5530.3 4147.6 3848.6 3965.1 6122.1 4665.5 7007.2 TRUE FALSE 5262.777413 5191.4219 5977.236153 5175.611311 4712.573339 4531.095173 4717.457026 5601.989392 5113.642121 5579.128794 0.943297351 0.930507628 1.071356546 0.927673747 0.844679073 0.812151026 0.845554423 1.004097521 0.916566423 1 12.44582414 -6.514008965 24.36178845 0.895604593 0.980418546 0.198572494 0.068782442 465.7263387 1279168.234 0.021022228 0.028656195 3.06E-07 6.514008965 0.084813953 FIQELSGSS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 FIQELSGSSPK 11 0 Q01664;I3L254 Q01664 TFAP4 Transcription factor AP-4 1 FIQELSGS(0.148)S(0.852)PK 170.95 8.02E-05 62062000 3052.9 2912 5489.5 3785.9 2857.7 2683 2314.8 3450.2 3052.5 4440.7 TRUE FALSE 3095.650019 3229.942008 4103.607832 3543.089319 3246.967121 3158.792379 2754.021216 3157.083975 3345.706264 3535.682902 0.875545151 0.91352706 1.160626658 1.002094763 0.918342287 0.893403754 0.778922005 0.892920565 0.946268757 1 11.78777318 -6.881478683 3.981846216 0.889514334 0.994711575 0.170502092 0.087260685 0.357731748 10.46517628 0.029430028 0.033922404 1.31E-07 6.881478683 0.105197241 FIQENVFVAANHNGS(ph)PLSIK ddPTM_K562_Paclitaxel_30min_R1 1 FIQENVFVAANHNGSPLSIK 20 0 E9PFD2;P11172-4;P11172-2;P11172-3;P11172 E9PFD2 UMPS Uridine 5-monophosphate synthase;Orotate phosphoribosyltransferase;Orotidine 5-phosphate decarboxylase 1 FIQENVFVAANHNGS(0.917)PLS(0.083)IK 87.881 0.0011409 11350000 1537.3 1292.6 1991.3 1898.7 944.28 1309.1 1311.1 1853.4 1593.6 2667.4 TRUE FALSE 1558.826943 1433.730439 1488.571687 1776.92588 1072.906923 1541.250504 1559.874381 1695.942101 1746.6724 2123.782416 0.73398618 0.675083487 0.700905929 0.836679816 0.505186838 0.725710173 0.734479375 0.798547953 0.822434722 1 11.05242025 -8.99811346 0.916836574 0.997143271 0.694502979 0.585575212 0.07793242 0.42863145 0.814775879 0.073944068 0.025725685 1.00E-09 8.99811346 -0.302640292 FIVS(ph)PVPESR ddPTM_K562_Paclitaxel_30min_R1 4 FIVSPVPESR 10 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4;H0YH68 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 FIVS(0.971)PVPES(0.029)R;FIVS(0.981)PVPES(0.019)R;FIVS(0.999)PVPES(0.001)R;FIVS(0.99)PVPES(0.01)R 114.71 0.0041639 113088000 8280.8 7833.2 10281.5 8340.4 7593.8 7684.4 6885.3 8039.7 7391.4 8705.6 TRUE FALSE 8396.756748 8688.455266 7685.808165 7805.484074 8628.204124 9047.120446 8191.749731 7356.677303 8101.376996 6931.393941 1.21140954 1.253493214 1.108840189 1.126105967 1.244800714 1.305238242 1.181832947 1.061356109 1.168794771 1 12.7589298 -8.960051429 0.920881669 1.008340343 1.203124796 0.447818223 0.066020966 0.584582467 1.122483316 0.067945711 0.023715472 1.10E-09 8.960051429 0.194784453 FLEES(ph)VSMSPEER ddPTM_K562_Paclitaxel_30min_R1 1 FLEESVSMSPEER 13 0 A0A087WTB8;Q5TBK7;P15374 A0A087WTB8 UCHL3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L3 1 FLEES(0.836)VS(0.147)MS(0.018)PEER 83.869 0.025983 26283000 1171.5 989.4 1275.8 1397.1 1170.8 922 1114.3 1292.8 977.84 1597.3 TRUE FALSE 1187.904614 1097.426038 953.7085111 1307.496259 1330.282782 1085.503754 1325.732608 1182.968571 1071.765901 1271.769383 0.934056622 0.862912767 0.749906802 1.02809226 1.046009441 0.853538203 1.042431612 0.930175381 0.842736046 1 10.31262137 -6.272621271 24.99231824 0.962545976 0.850354129 0.301435373 0.07974049 909.0722807 2031839.005 0.02275013 0.034087491 5.34E-07 6.272621271 -0.112191847 FLEESVS(ph)MSPEER ddPTM_K562_Paclitaxel_30min_R1 1 FLEESVSMSPEER 13 0 A0A087WTB8;Q5TBK7;P15374 A0A087WTB8 UCHL3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L3 1 FLEES(0.333)VS(0.461)MS(0.206)PEER 81.789 0.029232 5433000 1506.4 1497.4 1750.9 1379 1398 1329.7 1108 1483.2 1063.7 1650.3 TRUE FALSE 1527.494248 1660.891196 1308.86364 1290.557112 1588.431268 1565.503625 1318.237216 1357.192902 1165.873138 1313.967954 1.162504948 1.264027171 0.996115344 0.982183095 1.208881285 1.19143212 1.003249137 1.032896501 0.887291912 1 10.35971438 -7.873411952 5.938088476 0.979556895 1.129962252 0.412684467 0.08984504 0.245846062 11.86990899 0.041192837 0.027625974 1.34E-08 7.873411952 0.150405357 FLEESVSMS(ph)PEER ddPTM_K562_Paclitaxel_30min_R1 1 FLEESVSMSPEER 13 0 A0A087WTB8;Q5TBK7;P15374 A0A087WTB8 UCHL3 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase isozyme L3 1 FLEES(0.031)VS(0.004)MS(0.965)PEER 157.33 0.00071552 26633000 1520.4 1264.4 1791 1867.3 1704.5 1574.2 1441.2 2003.8 1393.8 2203.7 TRUE FALSE 1541.690291 1402.451468 1338.839899 1747.539736 1936.681757 1853.362267 1714.660176 1833.564683 1527.680718 1754.58473 0.878663916 0.799306778 0.763052292 0.995984808 1.103783547 1.056296818 0.977245582 1.045013473 0.870679364 1 10.7769139 -6.306338019 7.328815541 1.014229859 0.812370835 0.660369557 0.063402794 0.145147545 20.68096991 0.018171774 0.027258367 4.94E-07 6.306338019 -0.201859024 FLESAAADFS(ph)DEDEDDDVDGREK ddPTM_K562_Paclitaxel_30min_R1 2 FLESAAADFSDEDEDDDVDGREK 23 1 O43815-2;O43815 O43815-2 STRN Striatin 1 FLESAAADFS(1)DEDEDDDVDGREK;FLESAAADFS(1)DEDEDDDVDGREK 109.19 1.86E-05 41428000 2720.8 2875.4 5288.9 3570.4 2834.8 2292.75 1989.44 3430 3443.9 3905.9 TRUE FALSE 2758.899594 3189.345896 3953.651783 3341.410525 3220.947754 2699.337021 2366.925854 3138.600091 3774.701983 3109.875436 0.887141511 1.025554226 1.27132159 1.074451564 1.035716002 0.867988791 0.761099891 1.009236593 1.213779156 1 11.60264108 -7.032758295 9.296273042 0.957161366 1.073986638 0.089543914 0.138920989 0.973343711 267.63574 0.048999244 0.049791856 9.27E-08 7.032758295 0.116825272 FLESPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 FLESPSR 7 0 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 FLES(0.044)PS(0.956)R 109.44 0.005454 23982000 3039.8 2783.1 4009.3 3490.1 2784 3112.4 2700.7 3125.2 2429.5 3874.8 TRUE FALSE 3082.366579 3086.96827 2997.102629 3266.260607 3163.227934 3664.34044 3213.143726 2859.694753 2662.86433 3085.113633 0.999109578 1.000601157 0.971472362 1.058716467 1.025319748 1.187748937 1.041499312 0.926933362 0.863133306 1 11.59110791 -8.267582485 7.060642994 0.920745349 1.042312279 0.389000149 0.063209207 0.143065245 48.25223472 0.034781389 0.017889783 5.40E-09 8.267582485 0.12156693 FLHDNMVEIPNRIMFSEMK ddPTM_K562_Paclitaxel_30min_R1 1 FLHDNMVEIPNRIMFSEMK 19 1 P49916-4;P49916-3;P49916-2;P49916;K7EJR4 P49916-4 LIG3 DNA ligase 3 0 46.249 0.028856 21237000 1509.9 1504.7 1342.5 1738.3 1592.3 1966.5 2055.1 1615.6 2498.5 1566.8 FALSE TRUE 1531.043258 1668.988235 1003.569271 1626.813218 1809.198218 2315.231164 2445.044497 1478.344696 2738.492089 1247.4853 1.227303647 1.337882085 0.804473825 1.304074059 1.450276182 1.855918594 1.959978604 1.185059813 2.195209906 1 10.2848071 -6.823898433 2.689558811 1.667840128 1.140140776 0.28102003 0.354693812 0.324045039 4.779277464 0.111199647 0.134630188 1.50E-07 6.823898433 -0.527699352 FLIVAHDDGR ddPTM_K562_Paclitaxel_30min_R1 2 FLIVAHDDGR 10 0 Q16658 Q16658 FSCN1 Fascin 0 ; 97.456 0.02359 92909000 11906.1 12835.2 12882.4 12793.4 11485.2 10816.1 13215.2 14989.3 10609.2 17557.4 FALSE TRUE 12072.82213 14236.59054 9630.078792 11972.88859 13049.67869 12734.18347 15722.71521 13715.8654 11628.26106 13979.19224 0.863628021 1.018412959 0.688886641 0.856479286 0.933507349 0.910938433 1.124722726 0.981162943 0.831826393 1 13.77099338 -7.099719564 2.184370937 0.980551758 0.858809427 0.215517301 0.101139223 0.50894151 4.795361023 0.038756651 0.039720454 7.95E-08 7.099719564 -0.121742331 FLLGPPQGGS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 FLLGPPQGGSPR 12 0 Q8IY92-2;Q8IY92 Q8IY92-2 SLX4 Structure-specific endonuclease subunit SLX4 1 FLLGPPQGGS(1)PR 103.83 0.0082625 29720000 2134.3 2341.1 2661.6 2723.5 2298 2358.4 2090.8 2270.8 1985.4 2667.9 TRUE FALSE 2164.186785 2596.709215 1989.646162 2548.8269 2611.026505 2776.629126 2487.518385 2077.881366 2176.106541 2124.180516 1.018833743 1.222452233 0.936665291 1.199910686 1.229192381 1.307153091 1.17104849 0.978203759 1.024445204 1 11.05269066 -8.258884885 24.47269839 1.000993353 1.159659291 0.325901072 0.101444871 203.5905569 1950482.264 0.052600852 0.028547908 5.51E-09 8.258884885 0.158665938 FLLSLPEHR ddPTM_K562_Paclitaxel_30min_R1 2 FLLSLPEHR 9 0 Q15008-4;C9J7B7;Q15008 Q15008-4 PSMD6 26S proteasome non-ATPase regulatory subunit 6 0 ; 112.11 0.010938 14149800 8171.5 7444.5 8798.7 9031.8 7469.6 7744 8408.7 8747.1 7149.1 9743.2 FALSE TRUE 8285.926211 8257.315686 6577.359364 8452.540773 8487.085981 9117.289669 10004.20693 8003.979257 7835.802998 7757.530492 1.068113908 1.064425811 0.847867678 1.089591692 1.094044811 1.175282479 1.289612324 1.031768972 1.010089874 1 12.92138175 -6.498130842 24.56933496 1.112849828 0.995258935 0.186895827 0.098580591 960.234237 953305.762 0.029163281 0.043009201 3.18E-07 6.498130842 -0.117590892 FLMECRNS(ph)PVT(ph)KTPPRDLPTIPGVTSPSSDEPPMEASQSHLR ddPTM_K562_Paclitaxel_30min_R1 2 FLMECRNSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLR 42 3 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 FLMECRNS(0.612)PVT(0.574)KT(0.328)PPRDLPT(0.158)IPGVT(0.097)S(0.097)PS(0.091)S(0.042)DEPPMEASQSHLR;FLMECRNS(0.64)PVT(0.282)KT(0.282)PPRDLPT(0.282)IPGVT(0.282)S(0.127)PS(0.049)S(0.054)DEPPMEASQSHLR 49.191 0.00015019 85199000 1816.79 1722.31 2804.2 1780.54 1347.74 1325.82 1640.57 1882.45 2384.9 2409.5 TRUE FALSE 1842.230665 1910.35763 2096.245028 1666.344134 1531.325005 1560.935562 1951.859593 1722.524123 2613.980301 1918.442577 0.960274072 0.995785672 1.092680622 0.868592135 0.798212583 0.813647268 1.017418825 0.8978763 1.362553319 1 10.90571987 -8.73776077 24.99972606 1.181276818 0.930659934 0.416705262 0.118650815 192.2302366 202956.639 0.081245384 0.030669887 1.83E-09 8.73776077 -0.250616884 FLMECRNS(ph)PVTK ddPTM_K562_Paclitaxel_30min_R1 2 FLMECRNSPVTK 12 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 FLMECRNS(1)PVTK;FLMECRNS(1)PVTK 91.076 0.012088 641920000 5013.3 4418.4 7727.8 5769.3 4119.2 3470.4 3723.2 5261.1 3926.3 5601.5 TRUE FALSE 5083.501667 4900.815854 5776.821314 5399.28292 4680.304779 4085.826713 4429.657764 4814.136716 4303.438658 4459.911225 1.139821268 1.098859508 1.295277198 1.210625649 1.049416579 0.916122879 0.993216578 1.079424337 0.964915766 1 12.12279928 -6.880430792 4.462595449 0.994709236 1.187146287 0.697100022 0.060798351 0.131286084 4.50928932 0.020483537 0.023528766 1.32E-07 6.880430792 0.192437051 FLMPEAYPS(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 1 FLMPEAYPSSPR 12 0 O43166-3;O43166-2;O43166 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 FLMPEAYPS(0.5)S(0.5)PR 87.216 0.022051 9701000 1928 1627.5 2700 2323.8 1922.6 1739.3 1608.4 2249.8 1846.3 2537.7 TRUE FALSE 1954.997948 1805.195954 2018.351607 2174.761869 2184.49067 2047.740434 1913.585504 2058.665447 2023.645364 2020.515347 0.967573917 0.893433429 0.998929115 1.076340188 1.081155198 1.013474328 0.947077936 1.018881371 1.001549118 1 10.98050759 -5.910689028 6.156880467 1.021118304 0.931727923 0.438440089 0.039769035 0.194499397 10.83779964 0.011397199 0.024217493 1.23E-06 5.910689028 -0.089390381 FLMPEAYPSS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 FLMPEAYPSSPR 12 0 O43166-3;O43166-2;O43166 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 FLMPEAYPS(0.024)S(0.976)PR;FLMPEAYPS(0.001)S(0.999)PR;FLMPEAYPS(0.275)S(0.725)PR 176.99 0.00024169 28244300 4309.8 3878.6 5106.3 4272.4 3825.66 3951.64 3313.81 4356.2 4171.44 4751.3 TRUE FALSE 4370.150497 4302.078665 3817.151411 3998.387387 4346.779661 4652.40787 3942.588148 3986.113619 4572.12545 3782.982452 1.155212997 1.137218774 1.009032281 1.056940506 1.149035111 1.22982539 1.042190441 1.053696037 1.208603399 1 11.88530837 -11.22167943 4.878231899 0.999982142 1.111858922 0.195673456 0.070004512 1.41E-05 2.25E-06 0.070237579 0.017032396 6.00E-12 11.22167943 0.11187678 FLNAEGS(ph)GGIVGHDEISR ddPTM_K562_Paclitaxel_30min_R1 1 FLNAEGSGGIVGHDEISR 18 0 H0Y8J2;Q03188 H0Y8J2 CENPC Centromere protein C 1 FLNAEGS(1)GGIVGHDEISR 98.533 0.00081567 5591100 697.46 868.79 1003.5 646.81 700.01 735.63 742.08 693.92 588.11 644.31 TRUE FALSE 707.2265918 963.6474303 750.1540139 605.3265016 795.3632133 866.0836517 882.8858061 634.9671647 644.6005932 512.9992683 1.378611307 1.878457709 1.462290612 1.17997537 1.550417832 1.688274634 1.721027418 1.237754523 1.256533163 1 9.002812958 -8.409100677 5.129532995 1.163606026 1.550654786 0.464638406 0.191482973 0.224907756 8.533481152 0.11641321 0.053345926 3.90E-09 8.409100677 0.387048761 FLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAR ddPTM_K562_Paclitaxel_30min_R1 1 FLNEHPGGEEVLLEQAGVDASESFEDVGHSSDAR 34 0 D6RFH4;H3BUX2;O43169 D6RFH4 CYB5B Cytochrome b5 type B 0 81.386 9.01E-08 7539700 302.11 570.1 641.53 652.84 494.71 636.87 575.17 687.5 548.53 704.32 FALSE TRUE 306.3404721 632.345446 479.5678172 610.9697644 562.0978775 749.8099524 684.3055049 629.0925838 601.2187574 560.7791974 0.546276455 1.1276193 0.855181183 1.089501478 1.002351514 1.33708589 1.220276194 1.121818689 1.07211316 1 9.131289022 -4.865652266 0.935989079 1.130435471 3.70E-45 0.574474568 0.133602686 3.049676101 1.280413939 0.044885863 4.160721244 1.36E-05 4.865652266 -1.130435471 FLPLFDR ddPTM_K562_Paclitaxel_30min_R1 2 FLPLFDR 7 0 P61604;B8ZZL8;S4R3N1 P61604 HSPE1;HSPE1-MOB4 "10 kDa heat shock protein, mitochondrial" 0 ; 133.47 0.00043139 35831000 5748.4 6277.5 6381.1 6058 3779.1 4669 6618.5 6746.1 6567.1 8927.7 FALSE TRUE 5828.895335 6962.898679 4770.112385 5669.466995 4293.877401 5496.981594 7874.325824 6172.976697 7197.899298 7108.229839 0.820020662 0.979554522 0.671068957 0.797591963 0.604071266 0.773326372 1.107775916 0.868426716 1.012614879 1 12.79527462 -7.738514321 24.70300545 0.986239906 0.772235721 0.510339421 0.106751373 180.6206566 194628.5085 0.042088546 0.032577926 1.83E-08 7.738514321 -0.214004185 FLPLNIRNS(ph)PFTR ddPTM_K562_Paclitaxel_30min_R1 2 FLPLNIRNSPFTR 13 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 FLPLNIRNS(0.999)PFT(0.001)R;FLPLNIRNS(0.996)PFT(0.004)R 109.39 0.0033977 204268000 4944.4 4690.7 5081.2 4612 3837.7 4532.9 4968.7 5937.7 3318.4 6921.6 TRUE FALSE 5013.636855 5202.846489 3798.388217 4316.206963 4360.459713 5336.74617 5911.484887 5433.255323 3637.147147 5510.974121 0.909755108 0.944088354 0.689240801 0.783202183 0.791232116 0.968385271 1.072675131 0.985897448 0.659982621 1 12.42809164 -7.263076327 24.95608248 0.944962128 0.820504833 0.180713391 0.12062113 256.0486019 3903564.052 0.043191776 0.040108028 5.46E-08 7.263076327 -0.124457295 FLPPPLYSEIDPNPDQSADDRPSCPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 FLPPPLYSEIDPNPDQSADDRPSCPSR 27 1 Q96B67 Q96B67 ARRDC3 Arrestin domain-containing protein 3 1 FLPPPLY(0.006)S(0.007)EIDPNPDQS(0.073)ADDRPS(0.33)CPS(0.583)R 64.209 0.0011587 8195800 490.58 453 381.58 521.3 687.59 415.87 461.2 705.35 588.34 583.07 TRUE FALSE 497.4496336 502.4600719 285.2454097 487.8661513 781.251399 489.6187054 548.7102924 645.4261148 644.8526858 464.2400139 1.071535453 1.082328229 0.614435208 1.050892074 1.682860967 1.054667178 1.181953894 1.390285403 1.389050203 1 8.858727067 -6.533743616 24.98700516 1.293505146 0.921045966 0.365995456 0.216424345 216.5681174 498060.1658 0.063047772 0.081470644 2.93E-07 6.533743616 -0.372459179 FLPS(ph)PVVIK ddPTM_K562_Paclitaxel_30min_R1 2 FLPSPVVIK 9 0 H7C399;A0A087WTG3;Q13618-3;Q13618-2;Q13618 H7C399 CUL3 Cullin-3 1 FLPS(1)PVVIK;FLPS(1)PVVIK 109.16 0.0067512 25718000 11845 10373.9 18091.1 12354.4 10737.8 9783.5 9063.8 12426.9 12374.7 16164.1 TRUE FALSE 12010.86654 11506.55748 13523.77806 11562.04408 12200.47015 11518.46636 10783.60873 11371.15728 13563.34523 12869.84755 0.933256319 0.894071001 1.050811053 0.898382365 0.947988708 0.894996333 0.837897162 0.88355027 1.053885462 1 13.65170734 -8.763917457 24.99999601 1.026942765 0.918233539 0.3947556 0.054142788 70.87265028 714921.9622 0.046962123 0.014307687 1.72E-09 8.763917457 -0.108709225 FLPSELRDEH ddPTM_K562_Paclitaxel_30min_R1 2 FLPSELRDEH 10 1 Q9Y490 Q9Y490 TLN1 Talin-1 0 ; 139.38 0.0079135 24183000 3236.8 2877.1 3515.7 3343.9 3135.1 2580.8 3110.4 3866.5 3002.9 4474 FALSE TRUE 3282.125186 3191.231508 2628.118053 3129.437221 3562.153698 3038.468644 3700.582163 3538.016691 3291.341962 3562.196344 0.921376833 0.895860643 0.737780234 0.8785134 0.999988028 0.852976184 1.038848453 0.99321215 0.923964219 1 11.79855132 -6.631745985 5.619803039 0.965132535 0.848769689 0.405726535 0.065466766 0.214308779 9.809627488 0.019815693 0.025693174 2.33E-07 6.631745985 -0.116362846 FLS(ph)PEFIPR ddPTM_K562_Paclitaxel_30min_R1 2 FLSPEFIPR 9 0 A0A0A0MRF4;P49406 A0A0A0MRF4 MRPL19 "39S ribosomal protein L19, mitochondrial" 1 FLS(1)PEFIPR;FLS(1)PEFIPR 100.48 0.010883 13600500 4392.9 3589.8 4657.2 4690.2 3974.2 4752 3821.9 3699.2 3625.8 4547.7 TRUE FALSE 4454.414153 3981.746504 3481.43226 4389.391565 4515.553324 5594.700479 4547.085573 3384.92987 3974.074291 3620.876244 1.230203369 1.099663793 0.961488884 1.212245675 1.247088555 1.545123363 1.255797014 0.934837217 1.09754491 1 11.82212315 -8.254365431 24.86183393 1.012143295 1.220017013 0.315413629 0.14234121 706.053788 2481481.184 0.077666414 0.043610065 5.57E-09 8.254365431 0.207873718 FMSLQPSISVSEMEPNGT(ph)FSNNNSR ddPTM_K562_Paclitaxel_30min_R1 1 FMSLQPSISVSEMEPNGTFSNNNSR 25 0 Q9NS75 Q9NS75 CYSLTR2 Cysteinyl leukotriene receptor 2 1 FMSLQPSISVSEMEPNGT(0.499)FS(0.499)NNNS(0.002)R 55.631 0.015083 38169000 1760.7 1469.6 2811.9 1562.4 1420.2 1741 1151.4 1670.5 1338.1 2212.8 TRUE FALSE 1785.355232 1630.055898 2102.001068 1462.194657 1613.655284 2049.741905 1369.872139 1528.580598 1466.630484 1761.830145 1.013352642 0.925206043 1.19307816 0.829929412 0.915897193 1.163416298 0.777527926 0.867609515 0.83244715 1 10.78285913 -7.78497284 24.99928054 0.858363636 0.999397829 0.250496097 0.115393985 333.860582 354652.119 0.047302223 0.031911617 1.64E-08 7.78497284 0.141034194 FNADEFEDMVAEKR ddPTM_K562_Paclitaxel_30min_R1 3 FNADEFEDMVAEKR 14 1 F8W7C6;A0A087WV22;X1WI28;P27635 F8W7C6 RPL10 60S ribosomal protein L10 0 ;; 130.47 0.0001174 57176300 3336.54 3107.2 5480.46 4170.78 2848.48 2775.43 2382.04 3926.38 4014.36 4599.05 FALSE TRUE 3383.261854 3446.454604 4096.850092 3903.284839 3236.491201 3267.613542 2834.019655 3592.809511 4399.957215 3661.761086 0.92394391 0.941201385 1.118819605 1.065958359 0.883861925 0.892361207 0.773949908 0.981169833 1.201595929 1 11.83832195 -8.57458165 10.04796128 1.098382416 0.944939425 0.276551544 0.100698213 0.62713061 116.3967735 0.073855133 0.027841822 2.66E-09 8.57458165 -0.153442991 FNADSGYSIHS(ph)DSESQAETVHGLDGCASLLR ddPTM_K562_Paclitaxel_30min_R1 1 FNADSGYSIHSDSESQAETVHGLDGCASLLR 31 0 A0A0A0MR27;J3QT39;Q49A88-5;Q49A88-6;Q49A88 A0A0A0MR27 CCDC14 Coiled-coil domain-containing protein 14 1 FNADS(0.012)GY(0.031)S(0.111)IHS(0.272)DS(0.272)ES(0.272)QAET(0.029)VHGLDGCASLLR 49.199 0.0061184 35972000 297.83 352.03 433.12 206.68 287.89 256.15 372.66 410.5 343.92 404.65 TRUE FALSE 302.0005389 390.4658259 323.7734992 193.4244699 327.105492 301.574606 443.3702896 375.6254627 376.9550527 322.1821079 0.937359746 1.211941372 1.004939416 0.600357578 1.01528137 0.936037721 1.376148081 1.165879338 1.170006166 1 8.331732567 -7.730967278 24.81176082 1.191831741 0.952284934 0.312498701 0.164445734 228.5210917 186071.9283 0.065510111 0.050737554 1.86E-08 7.730967278 -0.239546807 FNADSGYSIHSDS(ph)ESQAETVHGLDGCASLLR ddPTM_K562_Paclitaxel_30min_R1 1 FNADSGYSIHSDSESQAETVHGLDGCASLLR 31 0 A0A0A0MR27;J3QT39;Q49A88-5;Q49A88-6;Q49A88 A0A0A0MR27 CCDC14 Coiled-coil domain-containing protein 14 1 FNADSGYS(0.001)IHS(0.159)DS(0.622)ES(0.217)QAETVHGLDGCASLLR 81.803 2.87E-07 37069000 530.37 355.04 499.25 398.14 342.06 350.68 377.89 343.72 372.12 440.45 TRUE FALSE 537.7968163 393.8044679 373.2081629 372.6050824 388.6543631 412.8681742 449.5926548 314.5188406 407.8637887 350.6860482 1.533556351 1.122954477 1.064223013 1.062503297 1.108268678 1.177315654 1.282037472 0.896867275 1.163045381 1 8.454036225 -5.262336856 4.955042453 1.099217021 1.555286569 0.638859296 0.098513996 0.106521712 8.077252055 0.024379031 0.167153479 5.47E-06 5.262336856 0.456069548 FNDS(ph)EGDDT(ph)EETEDYR ddPTM_K562_Paclitaxel_30min_R1 2 FNDSEGDDTEETEDYR 16 0 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 2 FNDS(0.998)EGDDT(0.986)EET(0.016)EDYR;FNDS(0.999)EGDDT(0.869)EET(0.132)EDYR 157.62 5.54E-07 27028500 2226.34 2273.32 3269.9 2583.75 2007.31 2124.92 2226.59 2679.5 1838.12 2836.55 TRUE FALSE 2257.515629 2521.528765 2444.373303 2418.039839 2280.739606 2501.744727 2649.073829 2451.85975 2014.679639 2258.459553 0.99958205 1.116481702 1.082318831 1.070658908 1.009865155 1.107721732 1.172956064 1.085633678 0.892059207 1 11.14112336 -8.747712591 24.99439895 0.94602962 1.08318858 0.507197445 0.053032282 159.5065163 290440.5868 0.03669954 0.013709833 1.79E-09 8.747712591 0.13715896 FNDS(ph)EGDDTEETEDYR ddPTM_K562_Paclitaxel_30min_R1 3 FNDSEGDDTEETEDYR 16 0 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 FNDS(0.852)EGDDT(0.148)EETEDYR;FNDS(0.978)EGDDT(0.022)EETEDYR;FNDS(1)EGDDTEETEDYR 255.72 4.77E-78 844109500 4028.46 3575.49 5439.68 4853.03 3731.38 3911.36 3916.55 4134.94 2441.34 5202.32 TRUE FALSE 4084.870869 3965.87409 4066.365507 4541.778377 4239.657129 4604.984778 4659.694917 3783.651038 2675.841615 4142.084328 0.986187278 0.957458558 0.981719633 1.096495874 1.02355645 1.111755438 1.124963798 0.913465477 0.646013312 1 12.01614121 -8.51993324 24.97818546 0.808584197 1.037708091 0.460403043 0.095943333 98.43681318 834797.126 0.060672506 0.023875908 3.02E-09 8.51993324 0.229123895 FNDS(ph)EGDDTEETEDYRQFR ddPTM_K562_Paclitaxel_30min_R1 6 FNDSEGDDTEETEDYRQFR 19 1 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 FNDS(0.707)EGDDT(0.285)EET(0.001)EDY(0.007)RQFR;FNDS(0.503)EGDDT(0.301)EET(0.012)EDY(0.183)RQFR;FNDS(0.913)EGDDT(0.055)EET(0.032)EDYRQFR;FNDS(1)EGDDTEETEDYRQFR;FNDS(0.998)EGDDTEET(0.002)EDYRQFR;FNDS(1)EGDDTEETEDYRQFR 171.9 7.14E-14 1657306000 3216.72 2781.63 4244.49 3523.11 2996.04 2896.42 2647.9 3515.29 3185.75 3653.69 TRUE FALSE 3261.764004 3085.33777 3172.916004 3297.153493 3404.151371 3410.059419 3150.325202 3216.644173 3491.755522 2909.065972 1.121240988 1.06059395 1.090699226 1.133406229 1.170187065 1.172217974 1.082933571 1.105730913 1.20030125 1 11.5063403 -6.244223731 7.874587964 1.130238102 1.087699514 0.059722647 0.054722181 0.44939355 160.0321564 0.014436331 0.024201795 5.70E-07 6.244223731 -0.042538588 FNDS(ph)EGDDTEETEDYRQFRK ddPTM_K562_Paclitaxel_30min_R1 2 FNDSEGDDTEETEDYRQFRK 20 2 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 FNDS(0.368)EGDDT(0.313)EET(0.313)EDY(0.005)RQFRK;FNDS(0.909)EGDDT(0.091)EETEDYRQFRK 102.78 0.00025995 128354000 2670.88 2251.37 4704.9 2643.15 2458.91 2334.41 1806.23 2579.4 3700.7 3476 TRUE FALSE 2708.28056 2497.18219 3517.089806 2473.630189 2793.855172 2748.384837 2148.952713 2360.26387 4056.16877 2767.589292 0.978570255 0.902295076 1.270813489 0.893785142 1.009490527 0.993060945 0.77647096 0.852823024 1.465596352 1 11.43441415 -8.744367535 24.99999196 1.232798435 0.962594809 0.313003937 0.161812956 247.3744855 362258.1572 0.107730295 0.040491716 1.80E-09 8.744367535 -0.270203626 FNDSEGDDT(ph)EET(ph)EDYR ddPTM_K562_Paclitaxel_30min_R1 1 FNDSEGDDTEETEDYR 16 0 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 2 FNDS(0.312)EGDDT(0.978)EET(0.709)EDY(0.001)R 107.13 0.013839 20825000 1972.2 1708.2 2541.8 2049.1 1796.3 1727.2 2040.6 2599.3 1130.4 2625.2 TRUE FALSE 1999.816885 1894.707053 1900.091153 1917.679897 2040.986472 2033.494669 2427.793197 2378.473241 1238.979971 2090.182799 0.956766502 0.906479114 0.909055014 0.917469945 0.976463146 0.972878865 1.161521948 1.137925947 0.592761538 1 11.0294134 -6.854979135 3.371660529 0.99201903 0.919919337 0.020430924 0.145452599 0.900917008 20.22721964 0.047363739 0.055599207 1.40E-07 6.854979135 -0.072099693 FNEEHIPDSPFVVPVAS(ph)PSGDARR ddPTM_K562_Paclitaxel_30min_R1 1 FNEEHIPDSPFVVPVASPSGDARR 24 1 A0A087WWY3;Q60FE5;P21333-2;P21333;H0Y5C6 A0A087WWY3 FLNA Filamin-A 1 FNEEHIPDSPFVVPVAS(0.888)PS(0.112)GDARR 105.35 2.54E-06 10400000 2218.4 2056.8 3126.5 2804.9 2208.7 1758 2061.4 2710.9 2039.5 2521.6 TRUE FALSE 2249.464444 2281.36838 2337.176407 2625.006268 2509.562334 2069.756616 2452.539889 2480.592124 2235.403088 2007.696536 1.120420544 1.136311359 1.164108402 1.307471633 1.249970944 1.030911086 1.22156902 1.235541368 1.113416818 1 10.97132551 FNEEHIPDSPFVVPVASPS(ph)GDAR ddPTM_K562_Paclitaxel_30min_R1 2 FNEEHIPDSPFVVPVASPSGDAR 23 0 A0A087WWY3;Q60FE5;P21333-2;P21333;H0Y5C6 A0A087WWY3 FLNA Filamin-A 1 FNEEHIPDSPFVVPVAS(0.402)PS(0.598)GDAR;FNEEHIPDSPFVVPVAS(0.382)PS(0.618)GDAR 176.26 6.58E-21 90000000 4154.5 4152.8 5625.1 5023.5 4053.6 4149 3576.3 4666.9 3973.7 4810.9 TRUE FALSE 4212.675818 4606.216748 4204.973935 4701.315194 4605.768948 4884.766895 4254.884255 4270.417715 4355.39164 3830.435939 1.099790177 1.202530683 1.09777947 1.227357739 1.202413778 1.275250904 1.110809402 1.114864674 1.137048552 1 11.90329288 -9.19555157 0.870260038 1.002081889 1.178651982 0.456721175 0.05601836 0.779484556 1.230592466 0.055318 0.019171655 6.37E-10 9.19555157 0.176570093 FNGGHS(ph)PTHSPEK ddPTM_K562_Paclitaxel_30min_R1 1 FNGGHSPTHSPEK 13 0 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 1 FNGGHS(0.961)PT(0.038)HSPEK 86.411 0.015986 241730000 3506.2 3611 6526.2 4310.8 3117.9 3009.3 2917 3911.4 3509 4961.6 TRUE FALSE 3555.297618 4005.261192 4878.580095 4034.324582 3542.610766 3542.957102 3470.485522 3579.102156 3846.055129 3950.423197 0.899978924 1.013881549 1.234951258 1.021238582 0.896767407 0.896855078 0.878509808 0.906004744 0.973580535 1 11.9477915 -6.66067955 5.173443562 0.917160842 1.058135334 0.31484606 0.084290453 0.234830804 9.944384522 0.02624506 0.033960405 2.18E-07 6.66067955 0.140974492 FNGGHSPT(ph)HS(ph)PEK ddPTM_K562_Paclitaxel_30min_R1 1 FNGGHSPTHSPEK 13 0 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 2 FNGGHS(0.361)PT(0.653)HS(0.986)PEK 104.81 0.012707 20317000 5162 4522.4 9663.5 6489.3 4520.5 3995.8 4533.7 6029.3 5430.5 7703.1 TRUE FALSE 5234.283926 5016.170926 7223.829908 6073.105343 5136.268633 4704.399026 5393.945907 5517.073331 5952.123789 6133.203992 0.853433855 0.817871203 1.177823193 0.990201101 0.837452764 0.767037756 0.879466249 0.899541796 0.970475431 1 12.58242522 FNHHCKDHTVS(ph)GDEDYCPR ddPTM_K562_Paclitaxel_30min_R1 1 FNHHCKDHTVSGDEDYCPR 19 1 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 FNHHCKDHT(0.032)VS(0.962)GDEDY(0.005)CPR 58.688 0.020427 22684000 1472.2 1301.8 2702.9 1590.8 1267.3 1243.4 1012.1 1672.5 2381.8 1695.8 TRUE FALSE 1492.815342 1443.934926 2020.519466 1488.773208 1439.927716 1463.899532 1204.140691 1530.410686 2610.582532 1350.195029 1.105629416 1.069426931 1.496464898 1.102635676 1.066459056 1.084213392 0.891827229 1.133473796 1.933485516 1 10.3989521 -8.576919025 24.99999626 1.488990668 1.117657933 0.232348328 0.252511032 121.7256808 56310.0898 0.161646751 0.061096738 2.65E-09 8.576919025 -0.371332735 FNPFVTSDR ddPTM_K562_Paclitaxel_30min_R1 1 FNPFVTSDR 9 0 J3QRI7;J3QQQ9;J3QQV1;E5RIT6;J3QRC4;Q9UNX3;P61254;E5RHH1;J3KSS0 J3QRI7 RPL26;RPL26L1 60S ribosomal protein L26-like 1;60S ribosomal protein L26 0 135.71 0.0054865 27153000 1005.8 1063.1 1339.3 1105.4 1066.3 1086.3 1327 1217.7 901.31 1579.6 FALSE TRUE 1019.884303 1179.172853 1001.177151 1034.504592 1211.548113 1278.940053 1578.791323 1114.248784 987.8848527 1257.676653 0.810927277 0.9375803 0.796052903 0.822552116 0.963322417 1.016906889 1.255323711 0.885958073 0.785483972 1 10.29654534 -6.862428264 4.595601963 0.997305409 0.84560794 0.262316274 0.117098177 0.3189941 11.58044477 0.039634417 0.045668694 1.37E-07 6.862428264 -0.15169747 FNYSGS(ph)GGR ddPTM_K562_Paclitaxel_30min_R1 1 FNYSGSGGR 9 0 Q12906;Q12906-7 Q12906 ILF3 Interleukin enhancer-binding factor 3 1 FNYSGS(1)GGR 109.39 0.0066387 11548000 1907 2103.7 2324 1876.8 1797.9 1817.9 1694.1 2031.1 1620.5 1903.5 TRUE FALSE 1933.703884 2333.38908 1737.277457 1756.430448 2042.804419 2140.27904 2015.546631 1858.545377 1776.156266 1515.565655 1.27589582 1.539615966 1.146289804 1.158927323 1.347882496 1.412198167 1.329897273 1.22630476 1.171942805 1 10.56564064 -8.964437884 1.461569479 1.003631501 1.315643982 0.448273123 0.10861871 0.399460937 1.926607532 0.108732857 0.032499995 1.09E-09 8.964437884 0.31201248 FPDRLAEDEGDS(ph)EPEAVGQSR ddPTM_K562_Paclitaxel_30min_R1 4 FPDRLAEDEGDSEPEAVGQSR 21 1 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 FPDRLAEDEGDS(0.999)EPEAVGQS(0.001)R;FPDRLAEDEGDS(1)EPEAVGQSR;FPDRLAEDEGDS(0.998)EPEAVGQS(0.002)R;FPDRLAEDEGDS(1)EPEAVGQSR 116.92 1.47E-05 155268000 2318.88 2343.53 2337.37 2421.42 2167.6 1965.9 1776.43 2282.58 3267.32 2108.06 TRUE FALSE 2351.351474 2599.404531 1747.272035 2266.120959 2462.863818 2314.524762 2113.498319 2088.660582 3581.160685 1678.436215 1.400917982 1.548706175 1.041011877 1.350138265 1.467356219 1.378976896 1.259206814 1.244408672 2.133629299 1 10.712902 FPEAEALS(ph)PEQAAHYLR ddPTM_K562_Paclitaxel_30min_R1 1 FPEAEALSPEQAAHYLR 17 0 Q2NKX8 Q2NKX8 ERCC6L DNA excision repair protein ERCC-6-like 1 FPEAEALS(1)PEQAAHYLR 128.01 1.22E-05 10380000 1616.1 1079.8 1496.8 1578.2 1360.3 1375.5 1283.5 1222.9 1227.7 1684.2 TRUE FALSE 1638.730386 1197.696216 1118.914328 1476.981316 1545.59589 1619.425612 1527.037425 1119.007012 1345.626071 1340.959116 1.222058426 0.893163857 0.834413454 1.101436501 1.152604783 1.207662182 1.138765088 0.834482572 1.003480311 1 10.38904954 -8.251424357 24.8908389 0.939236076 1.070753601 0.18507086 0.126527229 1208.908046 3004569.068 0.066246278 0.037663502 5.61E-09 8.251424357 0.131517525 FPFGIS(ph)PAQSHR ddPTM_K562_Paclitaxel_30min_R1 1 FPFGISPAQSHR 12 0 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 FPFGIS(0.996)PAQS(0.004)HR 91.969 0.017501 0 1197.1 1296.6 1546.8 1387.2 1052.6 1154.8 1340.4 1416.7 1189.5 1723.9 TRUE FALSE 1213.863093 1438.167173 1156.291209 1298.231201 1195.981941 1359.587566 1594.733903 1296.342492 1303.75679 1372.568234 0.884373588 1.047792844 0.842428945 0.94584092 0.871346073 0.990542789 1.161861293 0.94446488 0.94986665 1 10.42266216 -7.507786187 24.62739294 1.018960515 0.923664923 0.265310121 0.07608125 803.0235657 1310344.106 0.027460951 0.023416878 3.11E-08 7.507786187 -0.095295592 FPRDLS(ph)LISPLAQAVR ddPTM_K562_Paclitaxel_30min_R1 2 FPRDLSLISPLAQAVR 16 1 A0A140T922 A0A140T922 1 FPRDLS(0.997)LIS(0.003)PLAQAVR;FPRDLS(0.868)LIS(0.132)PLAQAVR 119 0.001115 124310000 8702.7 8120.1 13108.6 10224.1 8978.6 7196.2 7340.5 9137.6 9414.5 9071.6 TRUE FALSE 8824.56465 9006.679978 9799.171805 9568.371987 10201.63733 8472.34503 8733.321555 8361.303845 10318.80479 7222.80294 1.221764559 1.2469785 1.356699315 1.324744987 1.412420831 1.17299961 1.209131916 1.157625913 1.428642713 1 12.81834309 -7.287954087 24.88701507 1.204497387 1.312013763 0.224580865 0.109492379 1222.497956 1147446.611 0.037591548 0.033161871 5.15E-08 7.287954087 0.107516377 FQEIPIY(ph)T(ph)IS(ph)FNYNDEIANR ddPTM_K562_Paclitaxel_30min_R1 1 FQEIPIYTISFNYNDEIANR 20 0 H0YCW7;H0YEM4;Q502W6-5;Q502W6-8;Q502W6;Q502W6-6 H0YCW7 VWA3B von Willebrand factor A domain-containing protein 3B 3 FQEIPIY(0.999)T(0.999)IS(0.998)FNY(0.003)NDEIANR 56.819 0.018085 4425300 59.517 70.278 0 64.969 0 0 0 0 61.916 121.39 TRUE FALSE 60.35042163 77.9511897 0 60.80217913 0 0 0 0 67.86330845 96.65065137 0.624418157 0.806525239 0 0.629092285 0 0 0 0 0.702150554 1 6.59470755 -8.963407671 5.25838928 0.998112502 0.255761766 0.40044914 0.301258942 0.166228674 11.08774158 0.309969796 0.080713877 1.09E-09 8.963407671 -0.742350736 FQELLAS(ph)PAYR ddPTM_K562_Paclitaxel_30min_R1 3 FQELLASPAYR 11 0 Q9NSI2-2;Q9NSI2 Q9NSI2-2 FAM207A Protein FAM207A 1 FQELLAS(1)PAYR;FQELLAS(1)PAYR;FQELLAS(1)PAYR 152.88 0.00056415 38197000 4068.9 3507.9 4514.5 4000.4 3321.09 3160.51 3132.3 3700.5 3088.93 4219.6 TRUE FALSE 4125.877154 3890.904385 3374.75864 3743.832249 3773.478685 3720.982073 3726.637573 3386.119427 3385.635528 3359.643204 1.228070037 1.158130239 1.00449912 1.114354121 1.123178402 1.107552751 1.109236114 1.007880665 1.007736632 1 11.71409231 -2 0.162423976 0.983470611 1.764230201 0.53903588 0.05028007 57.8738954 0.605217562 0.160364517 10.85441017 0.01 2 0.78075959 FQEQECPPS(ph)PEPTR ddPTM_K562_Paclitaxel_30min_R1 1 FQEQECPPSPEPTR 14 0 P62070-2;P62070-3;P62070;P62070-4 P62070-2 RRAS2 Ras-related protein R-Ras2 1 FQEQECPPS(0.957)PEPT(0.043)R 114.27 0.0025606 29580000 2436.9 2299.3 3252.3 2823.9 2480.3 2291.3 2484.8 2883.8 2329.5 3440.6 TRUE FALSE 2471.024118 2550.34535 2431.216641 2642.787693 2818.158852 2697.629884 2956.277828 2638.80319 2553.258883 2739.403831 0.902029883 0.930985538 0.887498445 0.964730962 1.028748963 0.984750716 1.079168319 0.963276447 0.932049103 1 11.41964624 -6.467622508 4.514868148 0.999580217 0.910158995 0.535061807 0.037889138 0.17519886 7.418532356 0.011379828 0.01672983 3.41E-07 6.467622508 -0.089421222 FQEQECPPS(ph)PEPTRK ddPTM_K562_Paclitaxel_30min_R1 2 FQEQECPPSPEPTRK 15 1 P62070-2;P62070-3;P62070;P62070-4 P62070-2 RRAS2 Ras-related protein R-Ras2 1 FQEQECPPS(0.936)PEPT(0.064)RK;FQEQECPPS(0.959)PEPT(0.041)RK 76.704 0.02022 204359000 3431.8 2681.8 5596.9 3425.3 2814.87 2351.14 2281.79 3398.8 2487.35 3961.9 TRUE FALSE 3479.855788 2974.607993 4183.893373 3205.616589 3198.30295 2768.081667 2714.747741 3110.050725 2726.271081 3154.462605 1.103153286 0.942984072 1.326341091 1.016216386 1.013897881 0.877512912 0.86060546 0.985920936 0.864258488 1 11.62317853 -6.849324898 2.319259773 0.915605983 1.108728724 0.419790798 0.10044693 0.286614824 3.152047346 0.033638071 0.040510982 1.41E-07 6.849324898 0.193122741 FQEQECPPSPEPT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 FQEQECPPSPEPTR 14 0 P62070-2;P62070-3;P62070;P62070-4 P62070-2 RRAS2 Ras-related protein R-Ras2 1 FQEQECPPS(0.038)PEPT(0.962)R 168.55 9.38E-05 29520000 1251.9 1004.8 1733.2 1323 996.9 971.17 1345.2 1188.6 1051.2 1365.1 TRUE FALSE 1269.430462 1114.507462 1295.632224 1238.148702 1132.694658 1143.393364 1600.444678 1087.621011 1152.172457 1086.891871 1.167945494 1.025407855 1.192052548 1.139164562 1.042141071 1.051984465 1.472496686 1.000670849 1.060061712 1 10.08599271 FQIMNEIVY(ph)EK ddPTM_K562_Paclitaxel_30min_R1 1 FQIMNEIVYEK 11 0 A0A494C1A5;O75643 A0A494C1A5 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 1 FQIMNEIVY(1)EK 58.63 0.023896 5652500 0 0 0 0 0 52.324 0 0 0 0 TRUE FALSE 0 0 0 0 0 61.60292673 0 0 0 0 0 FQPHFGQQECVS(ph)PYR ddPTM_K562_Paclitaxel_30min_R1 3 FQPHFGQQECVSPYR 15 0 P25054-2;P25054-3;P25054;A0A2Q2SV78;E9PFT7 P25054-2 APC Adenomatous polyposis coli protein 1 FQPHFGQQECVS(1)PYR;FQPHFGQQECVS(1)PYR;FQPHFGQQECVS(1)PYR 153.68 3.34E-05 61933000 4298.41 4372.27 4378.67 4225.21 3793.21 4392.88 4097.09 5274.47 4358.46 6403.8 TRUE FALSE 4358.601002 4849.649225 3273.220604 3954.223942 4309.909422 5171.895589 4874.491439 4826.370851 4777.109557 5098.702045 0.854845206 0.951153682 0.641971344 0.775535402 0.845295407 1.014355329 0.956025945 0.946588133 0.936926597 1 12.31591432 -7.113742882 4.722330697 0.965853065 0.805094552 0.526127211 0.075053127 0.203688704 7.072968284 0.026642408 0.026850478 7.70E-08 7.113742882 -0.160758513 FQPPQVPDQAPAEAPTEKTEVS(ph)PVPR ddPTM_K562_Paclitaxel_30min_R1 2 FQPPQVPDQAPAEAPTEKTEVSPVPR 26 1 E9PPY3;O43159 E9PPY3 RRP8 Ribosomal RNA-processing protein 8 1 FQPPQVPDQAPAEAPT(0.017)EKT(0.011)EVS(0.972)PVPR;FQPPQVPDQAPAEAPT(0.014)EKT(0.014)EVS(0.972)PVPR 92.766 3.19E-05 94778000 2839.8 2365.4 4561.9 2857.39 2441.5 2386.5 2269.04 2911.3 2887.5 3588.2 TRUE FALSE 2879.565962 2623.662371 3410.191924 2674.129795 2774.073635 2809.712267 2699.578495 2663.966893 3164.857277 2856.92287 1.007925692 0.918352539 1.19365908 0.936017497 0.971000535 0.983475016 0.944925228 0.932460208 1.107785341 1 11.48024637 -4.907808679 20.08135854 0.995613014 1.884129764 0 0.082858652 7327.064723 1886034.207 0.019489851 53943.69472 1.24E-05 4.907808679 0.88851675 FQSHLGHEDLFS(ph)CCQRK ddPTM_K562_Paclitaxel_30min_R1 1 FQSHLGHEDLFSCCQRK 17 1 F5H391;B7Z8X0;Q8N468-2;Q8N468 F5H391 MFSD4 Major facilitator superfamily domain-containing protein 4 1 FQSHLGHEDLFS(1)CCQRK 64.2 0.026498 25348000 830.12 917.17 1348.6 1223.3 1019 982.8 943.94 1131 1647.9 1046.8 TRUE FALSE 841.7442411 1017.309722 1008.129251 1144.843013 1157.805052 1157.085781 1123.047687 1034.914491 1806.188158 833.4615854 1.009937657 1.220583816 1.209568945 1.373600215 1.389152268 1.388289276 1.347449849 1.241706287 2.167092269 1 9.702971896 -5.043407882 0.526497997 1.45718779 0.638027065 0.183167064 0.279329352 8.814255273 1.586531673 0.155751254 4.673483899 9.05E-06 5.043407882 -0.819160725 FQSPQIQATIS(ph)PPLQPK ddPTM_K562_Paclitaxel_30min_R1 2 FQSPQIQATISPPLQPK 17 0 A0A087WYN9;Q7Z478 A0A087WYN9 DHX29 ATP-dependent RNA helicase DHX29 1 FQSPQIQAT(0.15)IS(0.85)PPLQPK;FQSPQIQAT(0.003)IS(0.997)PPLQPK 119.04 0.00025131 108645000 4350 3752.1 7214.9 5172.3 3978.6 2992.1 3421 4907.9 4648.8 5902.8 TRUE FALSE 4410.913421 4161.766967 5393.409262 4840.571828 4520.552678 3522.706924 4070.116891 4490.943261 5095.338011 4699.80612 0.938530933 0.885518862 1.147581225 1.029951386 0.961859397 0.749543031 0.866018041 0.955559261 1.084159193 1 12.19838553 FQSSHHPTDITSLDQYVER ddPTM_K562_Paclitaxel_30min_R1 2 FQSSHHPTDITSLDQYVER 19 0 P14625 P14625 HSP90B1 Endoplasmin 0 ; 120.74 8.37E-05 58673000 1583.61 1357.61 1999.98 2257.16 1637.82 1444.22 1821.03 1960.54 1777.21 2127.79 FALSE TRUE 1605.785426 1505.838451 1495.060314 2112.39586 1860.918813 1700.332139 2166.560936 1793.97989 1947.918961 1694.14523 0.94784402 0.888848503 0.882486511 1.246880033 1.098441137 1.003651936 1.278851953 1.058929222 1.149794555 1 10.72634184 -6.243704803 24.76612869 1.122896699 0.904638529 0.55295311 0.087770721 519.5055957 725482.3781 0.022909255 0.039570021 5.71E-07 6.243704803 -0.21825817 FRDQDLASCDRDR ddPTM_K562_Paclitaxel_30min_R1 4 FRDQDLASCDRDR 13 2 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2 Q9Y383 LUC7L2 Putative RNA-binding protein Luc7-like 2 0 ;;; 119.74 0.0011699 323761000 3432.57 3544.84 4162.35 3564.32 2814.42 3244.45 3368.55 4036.93 3220.1 4236.37 FALSE TRUE 3480.63657 3931.877619 3111.513263 3335.720469 3197.791653 3819.807653 4007.714777 3693.967599 3529.404993 3372.995469 1.031912614 1.165693122 0.922477748 0.988948992 0.948056907 1.132467473 1.188176745 1.095159372 1.046371104 1 11.71981466 -7.276843736 24.94372273 1.104366265 1.013799331 0.210318042 0.076702969 1215.476752 1968170.799 0.02817175 0.024933192 5.29E-08 7.276843736 -0.090566933 FRIDELEPR ddPTM_K562_Paclitaxel_30min_R1 2 FRIDELEPR 9 1 F5H6X6;Q14697;Q14697-2 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 ; 120.27 0.0059936 11307000 3971.5 3718.4 5140.5 4265.3 3298 3640.9 3706.8 4668.9 4185.3 4704.3 FALSE TRUE 4027.113253 4124.387487 3842.717198 3991.742749 3747.243436 4286.562494 4410.145949 4272.247803 4587.316765 3745.561078 1.075169559 1.101140097 1.025939003 1.065726247 1.00044916 1.144438017 1.177432662 1.140616243 1.224734204 1 11.87096613 -7.335927912 9.087546878 1.148978081 1.055502676 0.323204352 0.059420931 0.448318813 51.97748962 0.01983427 0.01748324 4.61E-08 7.335927912 -0.093475405 FRLTPPS(ph)PVR ddPTM_K562_Paclitaxel_30min_R1 1 FRLTPPSPVR 10 1 Q8TAP8 Q8TAP8 PPP1R35 Protein phosphatase 1 regulatory subunit 35 1 FRLT(0.001)PPS(0.999)PVR 76.24 0.030609 11963000 1566.8 1565.9 2148.4 2035.3 1977.4 1786.8 1942.4 2049.2 1596.3 2480.6 TRUE FALSE 1588.740034 1736.870258 1606.009849 1904.764968 2246.755358 2103.663892 2310.96026 1875.107669 1749.631747 1975.052358 0.804404008 0.879404665 0.813147987 0.964412391 1.137567492 1.065118038 1.170075441 0.949396436 0.885866008 1 10.94767518 -6.436693168 4.138720316 1.041434403 0.838763419 0.555302512 0.080501797 0.182027574 5.640962273 0.02505666 0.037493968 3.66E-07 6.436693168 -0.202670983 FRNNSLS(ph)KPDDSTEAHEGDPTNGSGEQSK ddPTM_K562_Paclitaxel_30min_R1 1 FRNNSLSKPDDSTEAHEGDPTNGSGEQSK 29 2 Q9NSI8;A0A2R8Y4K8;Q9NSI8-3 Q9NSI8 SAMSN1 SAM domain-containing protein SAMSN-1 1 FRNNS(0.224)LS(0.633)KPDDS(0.072)T(0.072)EAHEGDPTNGSGEQSK 88.829 9.67E-07 19339000 3078.6 2150.4 7020.1 3151 2107.1 1753 1511.9 2955.5 2296.9 3559 TRUE FALSE 3121.709898 2385.187944 5247.788932 2948.908963 2394.122693 2063.869937 1798.775132 2704.411827 2517.527508 2833.673846 1.101647567 0.841729879 1.851938231 1.04066633 0.844882941 0.728337151 0.634785522 0.954383593 0.888432348 1 11.468458 -6.521109513 14.23341357 0.834311575 1.260011942 0.358331988 0.254237683 0.318700235 2497.823613 0.075631453 0.101019299 3.01E-07 6.521109513 0.425700367 FRNNSLSKPDDS(ph)TEAHEGDPTNGSGEQSK ddPTM_K562_Paclitaxel_30min_R1 1 FRNNSLSKPDDSTEAHEGDPTNGSGEQSK 29 2 Q9NSI8;A0A2R8Y4K8;Q9NSI8-3 Q9NSI8 SAMSN1 SAM domain-containing protein SAMSN-1 1 FRNNS(0.025)LS(0.025)KPDDS(0.474)T(0.474)EAHEGDPT(0.001)NGS(0.001)GEQSK 69.292 0.00021422 17087000 2495.4 1525.1 5455.1 2402.2 1657.8 1671.8 1006.1 2414.4 1880.4 2824.8 TRUE FALSE 2530.343299 1691.615576 4077.892537 2248.133644 1883.620427 1968.270257 1197.002223 2209.28165 2061.020822 2249.104209 1.125044935 0.752128589 1.813118539 0.999568466 0.837498067 0.875135198 0.532212877 0.982294035 0.916374089 1 11.13513479 -6.516236278 24.40358317 0.848056805 1.219640951 0.276491035 0.269463837 289.6360028 1064088.11 0.078663535 0.105598978 3.05E-07 6.516236278 0.371584145 FRT(ph)DSVCY(ph)AT(ph)TGLK ddPTM_K562_Paclitaxel_30min_R1 1 FRTDSVCYATTGLK 14 1 Q15678 Q15678 PTPN14 Tyrosine-protein phosphatase non-receptor type 14 3 FRT(0.944)DS(0.099)VCY(0.997)AT(0.953)T(0.006)GLK 58.98 0.026954 0 1178.1 971.64 1446.8 1149.2 1052.1 920.94 1012.9 1438.6 993.05 1086.3 TRUE FALSE 1194.597035 1077.726941 1081.537446 1075.495456 1195.413832 1084.255778 1205.092487 1316.381951 1088.43689 864.9114637 1.381178404 1.246054638 1.250460297 1.243474622 1.382122775 1.2536032 1.393313117 1.521984626 1.258437349 1 9.756408649 -6.747871289 24.83947997 1.329864217 1.275715641 0 0.133069309 895.6948508 1639763.451 0.037916134 0.048664751 1.79E-07 6.747871289 -0.054148576 FS(ph)DSEGEETVPEPR ddPTM_K562_Paclitaxel_30min_R1 1 FSDSEGEETVPEPR 14 0 A0A1B0GWH8;H3BQ48;A0A1B0GWD3;A0A1B0GV71;A0A1B0GW34;A0A0D9SFH9;H3BPL0;Q9UBD8;A0A1B0GV41;H3BR84;O95090;H3BR00;Q9UP10;Q9UBH5;A0A0D9SF04;Q13286-5;Q13286-4;Q13286-6;Q13286-2;Q13286-7;Q13286-3;Q13286 A0A1B0GWH8 CLN3 Battenin 1 FS(0.996)DS(0.004)EGEETVPEPR 202.25 1.63E-09 15344000 518.33 367.26 662.64 502.95 449.95 396.84 492.9 588.69 582.44 449.91 TRUE FALSE 525.5882192 407.3586888 495.3483366 470.6930381 511.2408077 467.2140021 586.4252019 538.67711 638.3859644 358.218095 1.467229675 1.137180657 1.382812157 1.313984538 1.427177507 1.304272477 1.637061918 1.503768563 1.782115346 1 8.484694405 -7.744726458 24.98854104 1.522717185 1.334505691 0.088814787 0.205612269 420.7016171 629017.6142 0.073213308 0.05655501 1.80E-08 7.744726458 -0.188211494 FS(ph)FY(ph)EVISAGPRAPS(ph)ELR ddPTM_K562_Paclitaxel_30min_R1 1 FSFYEVISAGPRAPSELR 18 1 O95803 O95803 NDST3 Bifunctional heparan sulfate N-deacetylase/N-sulfotransferase 3;Heparan sulfate N-deacetylase 3;Heparan sulfate N-sulfotransferase 3 3 FS(0.999)FY(0.961)EVIS(0.04)AGPRAPS(1)ELR 78.088 0.01087 0 895.57 1037.7 1389.9 1516.4 1158.6 1249.2 1227.5 1370.4 663.39 1468.5 TRUE FALSE 908.1107431 1150.999595 1039.002555 1419.144891 1316.420935 1470.72808 1460.411717 1253.975966 727.1115736 1169.218894 0.77668155 0.984417547 0.888629632 1.213754669 1.125897761 1.257872318 1.249049023 1.072490338 0.621878057 1 10.19132933 -6.23832974 23.24536525 1.097005658 0.893360261 0.19143129 0.179205311 548.0809705 551296.8042 0.050517522 0.087398638 5.78E-07 6.23832974 -0.203645398 FS(ph)GGFGAR ddPTM_K562_Paclitaxel_30min_R1 1 FSGGFGAR 8 0 A0A2R8Y4A4;A0A2R8YFS5;A0A2R8YDT5;A0A2R8YFR4;A0A2R8YCW1;A0A2R8Y5G6;A0A0J9YVQ7;O00571;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;A0A0D9SG12;A0A0D9SFB3;F6S8Q4;A0A2R8Y7T2;A0A0D9SF53;O00571-2;O15523-2;O15523;A0A087WVZ1 A0A2R8Y4A4 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 1 FS(1)GGFGAR 89.029 0.016636 24539000 1134.4 1049.2 1326.9 1031.4 775.21 956.45 907.89 1024.1 828.89 1335.8 TRUE FALSE 1150.2851 1163.755204 991.9076841 965.2506204 880.8067264 1126.062978 1080.157388 937.0963128 908.5085881 1063.563227 1.081538992 1.094204063 0.932626908 0.907562988 0.828165834 1.058764491 1.015602421 0.881091306 0.85421211 1 10.05469009 -5.7627703 24.93968533 0.933045173 1.087871573 0.439824516 0.069099383 30.19564814 565880.1072 0.019036411 0.043463216 1.73E-06 5.7627703 0.154826401 FS(ph)NPISS(ph)SKRNVSLLIS(ph)ANSGL ddPTM_K562_Paclitaxel_30min_R1 1 FSNPISSSKRNVSLLISANSGL 22 2 O15444-3;O15444 O15444-3 CCL25 C-C motif chemokine 25 3 FS(0.499)NPIS(0.499)S(0.496)S(0.496)KRNVS(0.011)LLIS(0.801)ANS(0.197)GL 50.358 0.030208 11666000 894.49 1061.8 868.45 1012.7 1111.5 1089.7 1161.9 1242 726.33 1203.5 TRUE FALSE 907.0156197 1177.730915 649.1990566 947.7499547 1262.905118 1282.942995 1382.364459 1136.484348 796.0972418 958.2260394 0.946557057 1.229074213 0.677500955 0.989067209 1.317961594 1.338873024 1.442628777 1.186029497 0.830803181 1 9.904222208 -6.678278269 7.007354088 1.215343792 0.956402276 0.216367948 0.206217581 0.326762833 22.96080083 0.063274048 0.081643953 2.10E-07 6.678278269 -0.258941516 FS(ph)PTMGR ddPTM_K562_Paclitaxel_30min_R1 1 FSPTMGR 7 0 H0Y3P2;D3DQV9;P78344-2;P78344;H0YCH5 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 FS(0.63)PT(0.37)MGR 88.177 0.022973 27759000 3121.8 2727 3544.9 3156.9 2933.6 2734.9 2709.5 3643.6 2027.4 4034.6 TRUE FALSE 3165.514832 3024.743082 2649.946152 2954.430564 3333.205986 3219.896115 3223.61348 3334.053437 2222.140829 3212.346305 0.985421412 0.941599315 0.824925428 0.919711103 1.037623491 1.002350248 1.00350746 1.037887301 0.691750085 1 11.64941171 -5.25916278 20.85883256 0.943877134 0.985421505 0.015979967 0.102984315 141.5798972 1296141.727 0.025587781 0.161486304 5.51E-06 5.25916278 0.041544371 FS(ph)PVLGR ddPTM_K562_Paclitaxel_30min_R1 1 FSPVLGR 7 0 F8VZ44;Q9NRG9-2;Q9NRG9 F8VZ44 AAAS Aladin 1 FS(1)PVLGR 88.177 0.022973 58587000 4443.6 4205.2 6485.7 5560.6 4456.2 3932.8 4824.3 5106 3321.5 5921.4 TRUE FALSE 4505.82411 4664.337957 4848.304821 5203.968004 5063.209884 4630.226861 5739.68574 4672.213429 3640.544916 4714.61543 0.955714029 0.989335827 1.028356372 1.103794802 1.073939107 0.982100646 1.21742395 0.991006265 0.772182794 1 12.20292438 -8.532841985 24.72133233 0.884592323 1.051355399 0.360191684 0.086667403 192.8950729 478608.3619 0.056721306 0.021491854 2.93E-09 8.532841985 0.166763077 FS(ph)PVTPK ddPTM_K562_Paclitaxel_30min_R1 1 FSPVTPK 7 0 H0Y2Y8;Q15942-2;Q15942;H7C3D3 H0Y2Y8 ZYX Zyxin 1 FS(1)PVTPK 85.862 0.027603 13020000 4690 3584.6 9284.9 6196.1 5016 3838.4 3902.8 5606.4 3419.1 7137.6 TRUE FALSE 4755.67447 3975.97875 6940.812161 5798.709879 5699.264122 4519.086346 4643.335926 5130.101326 3747.519832 5682.953202 0.836831538 0.699632499 1.221338961 1.020369106 1.002870148 0.795200345 0.817063903 0.902717503 0.65943176 1 12.47242512 -7.26411353 24.87442678 0.827688869 0.960248186 0.141310068 0.148845904 454.9248894 4231600.734 0.053245393 0.049056271 5.44E-08 7.26411353 0.132559317 FS(ph)SPIVK ddPTM_K562_Paclitaxel_30min_R1 1 FSSPIVK 7 0 P49790-2;P49790;P49790-3 P49790-2 NUP153 Nuclear pore complex protein Nup153 1 FS(0.5)S(0.5)PIVK 90.601 0.01921 30935000 7995.6 6909.2 14573 8943 7124.4 5915 5413.1 8579.9 5904.2 11373 TRUE FALSE 8107.563069 7663.569821 10893.86591 8369.436007 8094.863897 6963.942199 6440.207467 7850.983941 6471.324791 9055.176357 0.895351206 0.846319223 1.203053975 0.924270901 0.893948784 0.769056496 0.711218337 0.867016128 0.714654749 1 13.14452702 -6.942155932 2.668473587 0.799076238 0.976567857 0.274432822 0.11757643 0.338278288 4.891737476 0.039856404 0.044993574 1.14E-07 6.942155932 0.17749162 FSCPPNFTAKPPAS(ph)ESPR ddPTM_K562_Paclitaxel_30min_R1 1 FSCPPNFTAKPPASESPR 18 1 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 FSCPPNFT(0.001)AKPPAS(0.5)ES(0.5)PR 80.994 0.0063264 12078000 548.85 702.17 985.71 956.79 373.47 513.78 756.91 851.63 348.02 1249.9 TRUE FALSE 556.5355933 778.8352952 736.8553194 895.4257718 424.3429369 604.8916692 900.5297212 779.2787158 381.448876 995.1696939 0.559236879 0.782615568 0.740431832 0.899771946 0.426402592 0.607827663 0.904900668 0.783061141 0.383300334 1 9.958798741 FSCPPNFTAKPPASES(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 FSCPPNFTAKPPASESPR 18 1 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 FSCPPNFT(0.001)AKPPAS(0.077)ES(0.922)PR 75.868 0.010801 15659000 472.95 467.12 765.77 394.17 286.98 349.86 496.16 443.66 432.48 951.59 TRUE FALSE 479.5727592 518.1217413 572.4418926 368.8897004 326.0715346 411.9027587 590.3037699 405.9683138 474.0216364 757.6554357 0.63296947 0.683848775 0.755543834 0.486883197 0.430369162 0.543654463 0.779119032 0.535821819 0.625642758 1 9.565398083 -9.061220998 20.83506515 1.000000001 0.605797266 0.550753705 0.106286736 2728.874835 928705.4349 0.110552265 0.028544472 8.69E-10 9.061220998 -0.394202735 FSDS(ph)EGEETVPEPR ddPTM_K562_Paclitaxel_30min_R1 1 FSDSEGEETVPEPR 14 0 A0A1B0GWH8;H3BQ48;A0A1B0GWD3;A0A1B0GV71;A0A1B0GW34;A0A0D9SFH9;H3BPL0;Q9UBD8;A0A1B0GV41;H3BR84;O95090;H3BR00;Q9UP10;Q9UBH5;A0A0D9SF04;Q13286-5;Q13286-4;Q13286-6;Q13286-2;Q13286-7;Q13286-3;Q13286 A0A1B0GWH8 CLN3 Battenin 1 FS(0.012)DS(0.978)EGEET(0.01)VPEPR 118.24 0.0016188 13593000 332.07 327.01 619.9 481.65 641.83 321.37 368.91 436.28 354.14 648.73 TRUE FALSE 336.7200045 362.7140577 463.3985782 450.7591248 729.2581123 378.3604572 438.9087467 399.2152908 388.1567293 516.5184699 0.651903125 0.70222863 0.897157808 0.872687331 1.411872285 0.732520673 0.849744534 0.772896448 0.75148664 1 9.012676128 -5.727899671 3.425819303 0.912893404 0.660459279 0.207029263 0.184535143 0.383661696 9.144302855 0.051238562 0.149040523 1.87E-06 5.727899671 -0.252434125 FSEVAAVSEKPIFQESPSHLLEES(ph)PPNPCSEQLHCSK ddPTM_K562_Paclitaxel_30min_R1 1 FSEVAAVSEKPIFQESPSHLLEESPPNPCSEQLHCSK 37 1 F5GZT2;Q96R06 F5GZT2 SPAG5 Sperm-associated antigen 5 1 FS(0.003)EVAAVS(0.009)EKPIFQES(0.036)PS(0.163)HLLEES(0.789)PPNPCS(0.001)EQLHCSK 54.05 0.00055443 11142000 811.05 755.88 1724.3 896.52 864.96 708.73 794.48 852.12 642.35 1385.1 TRUE FALSE 822.4072023 838.4095346 1288.979139 839.0212199 982.7821959 834.4133144 945.2284325 779.7270872 704.0505876 1102.81586 0.745733927 0.760244357 1.16880722 0.760799015 0.891157111 0.756620706 0.857104497 0.707032893 0.638411736 1 10.1069762 -7.265053725 1.685935719 0.772786714 0.874700663 0.043168468 0.145782021 1.029091988 5.790517118 0.062630166 0.056897353 5.43E-08 7.265053725 0.101913949 FSKEEPVSS(ph)GPEEAVGK ddPTM_K562_Paclitaxel_30min_R1 2 FSKEEPVSSGPEEAVGK 17 1 O00567 O00567 NOP56 Nucleolar protein 56 1 FSKEEPVS(0.346)S(0.654)GPEEAVGK;FSKEEPVS(0.058)S(0.942)GPEEAVGK 96.447 0.0098164 26049000 5907.7 4876 13866.3 6956 4330.9 3906.8 3492 6415.9 5185.2 8126.7 TRUE FALSE 5990.426027 5408.37817 10365.58107 6509.873294 4920.841903 4599.616126 4154.588771 5870.829248 5683.261628 6470.474079 0.925809447 0.835855009 1.601981701 1.006089077 0.760507166 0.710862306 0.642084138 0.907325982 0.878337748 1 12.6596557 -6.61434107 5.199820657 0.800010967 1.12440439 0.298417585 0.2108804 0.25090301 11.1067252 0.065089599 0.084782832 2.43E-07 6.61434107 0.324393423 FSS(ph)PIVK ddPTM_K562_Paclitaxel_30min_R1 1 FSSPIVK 7 0 P49790-2;P49790;P49790-3 P49790-2 NUP153 Nuclear pore complex protein Nup153 1 FS(0.079)S(0.921)PIVK 88.37 0.022588 30015000 8654.7 6562.2 14286 9651.7 6865.4 5907.4 5343 8645.8 6060.4 11228 TRUE FALSE 8775.892502 7278.683188 10679.32261 9032.683161 7800.583712 6954.994446 6356.806358 7911.285325 6642.528499 8939.727437 0.981673386 0.814195202 1.194591523 1.010398049 0.872575117 0.777987304 0.711073845 0.884958225 0.74303479 1 13.12601513 -6.897347321 3.839194651 0.810392208 1.000411316 0.346819627 0.11406517 0.248405124 6.936532755 0.036538061 0.041928406 1.27E-07 6.897347321 0.190019108 FSSVSS(ph)PQPR ddPTM_K562_Paclitaxel_30min_R1 3 FSSVSSPQPR 10 0 Q9P206;Q9P206-3;Q9P206-2 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 1 FSSVS(0.024)S(0.975)PQPR;FSS(0.002)VS(0.042)S(0.956)PQPR;FSSVS(0.037)S(0.962)PQPR 121.29 0.0025381 203246000 9208.4 7943.5 11323.5 9971.5 7963.4 7451.6 7252.2 8684.2 9470.7 9473.9 TRUE FALSE 9337.34601 8810.798193 8464.742378 9331.972621 9048.149901 8773.036634 8628.267091 7946.423005 10380.40305 7543.11398 1.237863571 1.168058473 1.122181423 1.237151214 1.199524484 1.163052376 1.143860097 1.053467179 1.37614294 1 12.88094451 -7.456486363 4.180169598 1.148281785 1.189872303 0.054733789 0.096239313 0.906577437 30.94265565 0.034246485 0.029095829 3.50E-08 7.456486363 0.041590518 FSTLTDDPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 FSTLTDDPSPR 11 0 Q14C86-4;Q14C86-2;Q14C86-6;Q14C86-5;Q14C86 Q14C86-4 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 FSTLTDDPS(1)PR;FSTLTDDPS(1)PR 99.5 0.010036 17508000 4562.7 4317.7 5521.3 5442.4 4351.4 4065.9 4523.6 6296.5 2956.6 5974.7 TRUE FALSE 4626.591877 4789.121088 4127.379528 5093.348823 4944.13435 4786.930277 5381.929485 5761.573023 3240.59464 4757.05286 0.97257525 1.006741196 0.867633732 1.070694182 1.039327183 1.006280657 1.131357932 1.211164389 0.681218968 1 12.21585234 -6.288016518 24.49911319 1.033677503 0.95475912 0.048762329 0.133853424 1647.744943 1518906.46 0.036843206 0.05466951 5.15E-07 6.288016518 -0.078918382 FSTYSQS(ph)PPDTPSLR ddPTM_K562_Paclitaxel_30min_R1 2 FSTYSQSPPDTPSLR 15 0 H3BMG9;H3BSV5;A0A0A0MTL6;Q6ZS17-2;Q6ZS17;Q6ZS17-3;Q6ZS17-4 H3BMG9 FAM65A Protein FAM65A 1 FSTYSQS(0.571)PPDT(0.427)PS(0.002)LR;FSTYSQS(0.979)PPDT(0.01)PS(0.01)LR 193.54 1.60E-07 54563000 2397.2 2391.6 3493.8 3037.1 2437.7 2238.5 2362 2688.7 2223.17 3259.9 TRUE FALSE 2430.768196 2652.722976 2611.746979 2842.314 2769.756011 2635.466545 2810.17717 2460.278153 2436.715412 2595.530591 0.936520727 1.022034949 1.006247813 1.095080139 1.067125165 1.015386432 1.082698536 0.947890255 0.938812057 1 11.34181378 -8.281293753 24.79848007 0.957513353 1.033890608 0.335001577 0.044951471 854.0247271 1066686.788 0.025109428 0.012090494 5.23E-09 8.281293753 0.076377255 FSVPSGSS(ph)PGSQSDAEPR ddPTM_K562_Paclitaxel_30min_R1 3 FSVPSGSSPGSQSDAEPR 18 0 K7ELX0;Q8TEP8 K7ELX0 CEP192 Centrosomal protein of 192 kDa 1 FSVPSGS(0.034)S(0.96)PGS(0.006)QSDAEPR;FSVPSGS(0.009)S(0.984)PGS(0.007)QSDAEPR;FSVPSGS(0.018)S(0.982)PGSQSDAEPR 284.72 4.84E-135 83637000 6921.5 5859.3 9169.3 8280.5 6488.9 5958.3 5641.7 7042.9 5308.1 7396.9 TRUE FALSE 7018.422355 6499.038189 6854.396811 7749.425792 7372.798038 7014.920846 6712.183123 6444.561685 5817.966722 5889.40772 1.191702577 1.103513035 1.163851636 1.3158243 1.251874278 1.191108033 1.13970427 1.094263123 0.987869579 1 12.52390684 -8.382470502 1.502275558 0.990540427 1.203427765 0.700826888 0.053394013 0.265475005 1.056118167 0.051815451 0.018392023 4.15E-09 8.382470502 0.212887338 FT(ph)S(ph)LNES(ph)IT(ph)TK ddPTM_K562_Paclitaxel_30min_R1 1 FTSLNESITTK 11 0 A6NHS7 A6NHS7 MANSC4 MANSC domain-containing protein 4 4 FT(1)S(1)LNES(0.995)IT(0.804)T(0.201)K 44.44 0.030666 5103400 0 0 66.489 195.1 0 122.23 0 202 0 139.28 TRUE FALSE 0 0 49.70302962 182.5871592 0 143.9057743 0 184.8388392 0 110.8946595 0 0 0.44820039 1.646491905 0 1.297679932 0 1.666796579 0 1 6.79304608 -5.939870903 4.799149951 0.801143413 0.021699841 0.216028383 0.607185686 0.280970615 13.11792351 0.14743201 0.317624652 1.15E-06 5.939870903 -0.779443572 FT(ph)SIPASFWWAT(ph)ITMTTVGY(ph)GDIY(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 FTSIPASFWWATITMTTVGYGDIYPK 26 0 Q92953 Q92953 KCNB2 Potassium voltage-gated channel subfamily B member 2 4 FT(0.631)S(0.308)IPAS(0.094)FWWAT(0.714)IT(0.216)MT(0.213)T(0.203)VGY(0.742)GDIY(0.879)PK 46.558 0.023519 0 500.72 569.87 540.66 680.95 386.5 433.95 370.87 689.14 357.12 752.29 TRUE FALSE 507.7316249 632.0903338 404.1636962 637.2769148 439.1478435 510.9049395 441.2406464 630.5932555 391.4229717 598.9728851 0.847670466 1.055290397 0.674761256 1.063949522 0.733168152 0.852968394 0.736662139 1.052790988 0.653490302 1 9.226346885 -5.733256449 24.99966183 0.847960932 0.951480201 0.072726923 0.150559715 574.3405001 509460.5121 0.034831286 0.092114526 1.85E-06 5.733256449 0.103519269 FTDEDQQVVR ddPTM_K562_Paclitaxel_30min_R1 1 FTDEDQQVVR 10 0 B4DH95;Q6P9H5-2;Q6P9H5 B4DH95 GIMAP6 GTPase IMAP family member 6 0 95.775 0.026264 9171700 1432.6 1752.5 1655 1663.8 1366.2 1481.7 1507.7 1391.4 1347.4 2101.3 FALSE TRUE 1452.66082 1943.843877 1237.174781 1557.091315 1552.29957 1744.458691 1793.778204 1273.191885 1476.82379 1673.053907 0.868268987 1.161853703 0.739470962 0.930688072 0.927824001 1.042679309 1.072158044 0.760998722 0.88271142 1 10.70826822 -8.262890379 24.9981552 0.866391314 0.962744047 0.083297322 0.121759749 300.9910307 5185403.408 0.061600861 0.032044668 5.46E-09 8.262890379 0.096352733 FTDKDQQPS(ph)GS(ph)EGEDDDAEAALKK ddPTM_K562_Paclitaxel_30min_R1 1 FTDKDQQPSGSEGEDDDAEAALKK 24 2 H3BNW0;Q9NXG2 H3BNW0 THUMPD1 THUMP domain-containing protein 1 2 FT(0.029)DKDQQPS(0.977)GS(0.994)EGEDDDAEAALKK 69.72 0.0040631 27414000 4360.5 1908.8 11025 3977.5 2672 1563.7 1568.9 3682.4 2108.3 5969.9 TRUE FALSE 4421.560453 2117.209239 8241.602395 3722.400953 3035.971637 1841.00024 1866.590585 3369.557135 2310.811635 4753.231103 0.930222065 0.445425268 1.733894737 0.783130648 0.638717447 0.387315533 0.392699312 0.708898234 0.486155961 1 12.21469283 -6.519053239 19.2401324 0.579639799 1.024255485 0.249856154 0.335417617 10.80015001 54319.62083 0.097423625 0.129855679 3.03E-07 6.519053239 0.444615686 FTGLS(ph)KEELLK ddPTM_K562_Paclitaxel_30min_R1 1 FTGLSKEELLK 11 1 F5GZR9;F5H867;F5H0E2;H0YFS2;F5GZS6;J3KPF3;P08195-2;P08195-3;P08195;P08195-4 F5GZR9 SLC3A2 4F2 cell-surface antigen heavy chain 1 FT(0.014)GLS(0.986)KEELLK 112.51 0.014498 7995700 1248.1 749.92 2901.4 1604.5 1052.5 786.14 761.85 1355.1 1260.9 1800.6 TRUE FALSE 1265.577251 831.7988017 2168.905686 1501.594551 1195.868319 925.550891 906.4070604 1239.975797 1382.015079 1433.636732 0.882774013 0.580201932 1.512869779 1.047402399 0.834150167 0.645596524 0.63224319 0.864916313 0.963992515 1 10.48546379 -6.834418615 5.675719976 0.795615084 1.0111756 0.11579108 0.240813387 0.425384578 24.07430293 0.07909328 0.09084108 1.46E-07 6.834418615 0.215560516 FTGS(ph)FDDDPDPHRDPYGEEVDRR ddPTM_K562_Paclitaxel_30min_R1 1 FTGSFDDDPDPHRDPYGEEVDRR 23 2 F1T0I1;O15027-2;O15027-4;O15027-3;O15027;O15027-5;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 F1T0I1 SEC16A Protein transport protein Sec16A 1 FT(0.175)GS(0.824)FDDDPDPHRDPY(0.001)GEEVDRR 64.152 0.0038311 67022000 1570.1 1227.4 1756.3 1450.3 1322.7 1218.7 1317.9 1570.8 1670 1724.2 TRUE FALSE 1592.086244 1361.411683 1312.900343 1357.284249 1502.874133 1434.819334 1567.964645 1437.350735 1830.410962 1372.807094 1.159730491 0.99169919 0.956361858 0.988692625 1.094745315 1.045171853 1.142159487 1.047015813 1.333334429 1 10.4229132 -7.613978737 1.278188744 1.143069322 1.023386625 0.164912856 0.09781369 0.726047471 2.41656012 0.055591564 0.036707064 2.43E-08 7.613978737 -0.119682697 FTGSFDDDPDPHRDPYGEEVDRR ddPTM_K562_Paclitaxel_30min_R1 1 FTGSFDDDPDPHRDPYGEEVDRR 23 2 F1T0I1;O15027-2;O15027-4;O15027-3;O15027;O15027-5;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 F1T0I1 SEC16A Protein transport protein Sec16A 0 61.276 0.004594 34339000 2386.9 2465.8 2570.6 2466.8 1982.1 2230.7 2275.6 2525.2 2194.4 3006.4 FALSE TRUE 2420.323964 2735.024383 1921.620237 2308.590489 2252.095577 2626.283324 2707.383221 2310.668498 2405.181925 2393.69403 1.011125037 1.142595649 0.802784405 0.964446776 0.940845216 1.097167513 1.131048157 0.965314894 1.004799233 1 11.22502304 -7.249769008 24.73417887 1.043209529 0.971956561 0.122953346 0.089628388 1497.779577 3174397.395 0.031187592 0.030934449 5.63E-08 7.249769008 -0.071252969 FTGVASGST(ph)GSTGSCSVGAK ddPTM_K562_Paclitaxel_30min_R1 1 FTGVASGSTGSTGSCSVGAK 20 0 Q9UKI8;B3KRP1;Q9UKI8-5;Q9UKI8-2;F8W7X8 Q9UKI8 TLK1 Serine/threonine-protein kinase tousled-like 1 1 FTGVASGS(0.007)T(0.741)GS(0.24)T(0.012)GSCSVGAK 276.62 1.23E-120 9837700 701.72 722.04 1352.5 805.86 767.35 793.98 409.69 771.21 642.13 847.21 TRUE FALSE 711.546245 800.874769 1011.044647 754.1757465 871.8760613 934.781205 487.4265388 705.6908968 703.8094556 674.548137 1.054848729 1.187275933 1.498847291 1.118045852 1.292533495 1.385788728 0.722597117 1.046168328 1.043379141 1 9.39777759 -7.748470687 24.99999051 0.956883462 1.259487396 0.507893381 0.146163294 192.0298648 370179.8398 0.056355169 0.04337444 1.78E-08 7.748470687 0.302603934 FTGVASGSTGS(ph)TGSCSVGAK ddPTM_K562_Paclitaxel_30min_R1 1 FTGVASGSTGSTGSCSVGAK 20 0 Q9UKI8;B3KRP1;Q9UKI8-5;Q9UKI8-2;F8W7X8 Q9UKI8 TLK1 Serine/threonine-protein kinase tousled-like 1 1 FTGVASGS(0.008)T(0.004)GS(0.782)T(0.206)GS(0.001)CSVGAK 193.27 2.76E-17 10136000 1785 1679.2 3134.6 2246.2 1850.1 1919.8 1568.3 1593.4 1746 2750.4 TRUE FALSE 1809.995507 1862.540735 2343.231462 2102.138786 2102.114942 2260.249575 1865.876738 1458.030724 1913.711101 2189.86697 0.826532174 0.850526886 1.070033702 0.959939035 0.959928147 1.032140128 0.852050268 0.665807898 0.873893769 1 11.09662752 -7.952986947 9.116522889 0.813790275 0.951139951 0.169094836 0.103291157 0.423367208 77.1100641 0.043345688 0.029151803 1.11E-08 7.952986947 0.137349676 FTPVASKFS(ph)PGAPGGSGSQPNQK ddPTM_K562_Paclitaxel_30min_R1 1 FTPVASKFSPGAPGGSGSQPNQK 23 1 H0Y2Y8;Q15942-2;Q15942;H7C3D3 H0Y2Y8 ZYX Zyxin 1 FT(0.005)PVAS(0.204)KFS(0.773)PGAPGGS(0.008)GS(0.008)QPNQK 64.707 0.0050247 29734000 1555.1 1433.5 3500.8 1940.1 1371.9 1156.1 980.02 2224.5 1688 2269.2 TRUE FALSE 1576.876198 1590.014378 2616.979743 1815.67067 1558.776006 1361.118103 1165.973679 2035.51484 1850.139942 1806.735794 0.872776309 0.880048086 1.448457351 1.004945314 0.862758136 0.753357578 0.645348192 1.126625623 1.024023517 1 10.81916984 -5.572591456 24.99999971 0.977269223 0.874563186 0.040949294 0.205236007 411.8951714 207135.8728 0.057325774 0.151669826 2.68E-06 5.572591456 -0.102706038 FTSGAFLS(ph)PSVSVQECR ddPTM_K562_Paclitaxel_30min_R1 2 FTSGAFLSPSVSVQECR 17 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 FTSGAFLS(0.997)PS(0.003)VSVQECR;FT(0.108)S(0.013)GAFLS(0.864)PS(0.014)VSVQECR 186.94 1.83E-82 14326000 2237.31 2440.32 2783.3 2341.19 2022.51 2088.27 1960.2 2203.66 2355.02 2917.79 TRUE FALSE 2268.639243 2706.76239 2080.621492 2191.036552 2298.010103 2458.595364 2332.137717 2016.445328 2581.230194 2323.142796 0.976538871 1.16512958 0.895606372 0.943134686 0.989181598 1.058305743 1.003871876 0.867981655 1.111094074 1 11.18186212 -5.764868182 24.99999993 0.981071565 1.070834208 0.160943738 0.079455006 137.1596477 1000088.96 0.019930883 0.044362831 1.72E-06 5.764868182 0.089762642 FTSGAFLS(ph)PSVSVQECRT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 FTSGAFLSPSVSVQECRTPR 20 1 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 2 FT(0.005)S(0.025)GAFLS(0.887)PS(0.012)VS(0.084)VQECRT(0.987)PR 73.655 0.023602 17456000 2537 2110.2 2786.8 1974.5 1796.7 1891 2103.4 2986 2455.8 3529.9 TRUE FALSE 2572.525827 2340.598772 2083.237873 1847.864408 2041.440958 2226.342299 2502.50917 2732.320662 2691.690563 2810.504442 0.915325302 0.832803797 0.741232727 0.657484962 0.72636105 0.792150429 0.890412814 0.972181584 0.95772507 1 11.45661338 -7.928748183 2.251423904 0.974830369 0.768489727 0.660622012 0.064539394 0.212749885 2.170760903 0.038864459 0.02228812 1.18E-08 7.928748183 -0.206340642 FTSGAFLSPSVSVQECRT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 FTSGAFLSPSVSVQECRTPR 20 1 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 FTSGAFLSPSVSVQECRT(1)PR;FTSGAFLSPSVSVQECRT(1)PR 136.96 1.83E-09 49870000 2299.29 2391.26 2285.21 2021.75 1828.5 2040.59 2644.27 3312.6 2425.55 4171.7 TRUE FALSE 2331.487154 2652.345854 1708.280472 1892.084004 2077.572657 2402.459985 3146.006428 3031.173953 2658.534915 3321.50525 0.701936917 0.798537306 0.514309129 0.569646549 0.625491306 0.723304588 0.947162865 0.912590445 0.800400636 1 11.69762148 -7.616023735 3.861987428 0.907287655 0.641662658 0.696627487 0.085049879 0.142421872 4.060010761 0.036477863 0.027683277 2.42E-08 7.616023735 -0.265624997 FTYFSSLS(ph)PMAR ddPTM_K562_Paclitaxel_30min_R1 2 FTYFSSLSPMAR 12 0 Q9H425 Q9H425 C1orf198 Uncharacterized protein C1orf198 1 FT(0.001)YFS(0.19)S(0.14)LS(0.668)PMAR;FTYFS(0.022)S(0.457)LS(0.52)PMAR 89.629 0.018762 9073000 1399.97 1221.59 1638.97 1315.67 1239.54 1248.98 1146.12 1837.06 1232.89 1729.84 TRUE FALSE 1419.573899 1354.967327 1225.191753 1231.288815 1408.386334 1470.469066 1363.590287 1680.990286 1351.314593 1377.297658 1.030695065 0.983786852 0.889562068 0.893988897 1.022572227 1.067647983 0.990047633 1.220498907 0.98113475 1 10.42762467 -6.951980321 5.803913661 1.060231045 0.947956733 0.295771338 0.074191336 0.227132688 17.62718147 0.02334728 0.026352438 1.12E-07 6.951980321 -0.112274313 FTYRSDS(ph)FENPVLQQHFR ddPTM_K562_Paclitaxel_30min_R1 1 FTYRSDSFENPVLQQHFR 18 1 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 1 FT(0.002)Y(0.001)RS(0.005)DS(0.992)FENPVLQQHFR 65.416 0.024695 0 471.72 582.74 757.98 595.3 636.38 656.55 545.95 525.08 759.62 693.72 TRUE FALSE 478.3255354 646.3655239 566.6185744 557.1201225 723.06573 772.9799241 649.5411624 480.4711766 832.5848951 552.3394832 0.865999172 1.170232336 1.02585202 1.008655255 1.309096583 1.39946527 1.175981769 0.869883815 1.507378923 1 9.10941145 -5.260424903 23.36442349 1.162142904 0.865998966 0.184309332 0.187403712 60.80109758 1399778.144 0.046243795 0.272730822 5.49E-06 5.260424903 -0.296143938 FVAFSGEGQS(ph)LR ddPTM_K562_Paclitaxel_30min_R1 3 FVAFSGEGQSLR 12 0 Q92890;Q92890-1 Q92890 UFD1L Ubiquitin fusion degradation protein 1 homolog 1 FVAFS(0.011)GEGQS(0.989)LR;FVAFS(0.002)GEGQS(0.998)LR;FVAFSGEGQS(1)LR 156.52 0.00057475 123723000 4000.04 3201.4 3606.84 4404.1 3527.09 3162.87 3592.29 4069.3 2760.91 5247.7 TRUE FALSE 4056.052901 3550.939678 2696.248633 4121.640738 4007.539372 3723.760586 4273.908274 3723.587565 3026.107742 4178.215859 0.970761932 0.849869848 0.645310995 0.986459502 0.959150869 0.891232217 1.022902698 0.891190807 0.724258354 1 12.02867131 FVEWLQNAEEES(ph)ESEGEEN ddPTM_K562_Paclitaxel_30min_R1 1 FVEWLQNAEEESESEGEEN 19 0 E9PFD4;B5MCE7;B5MCH7;Q9Y6E2 E9PFD4 BZW2 Basic leucine zipper and W2 domain-containing protein 2 1 FVEWLQNAEEES(0.878)ES(0.122)EGEEN 135.58 1.70E-09 5895700 4682.6 4318.2 5462.9 4870.1 4422.2 4403.1 3938.8 5144.7 3433.6 5070.1 TRUE FALSE 4748.170847 4789.675679 4083.723331 4557.753584 5024.578508 5183.927962 4686.166738 4707.625623 3763.412622 4036.810837 1.176218317 1.186499906 1.011621177 1.129048095 1.244690106 1.284164201 1.16085864 1.166174441 0.932273712 1 11.97900027 -8.754965208 24.9935422 0.966136828 1.169823583 0.580172726 0.069336518 104.8124639 404640.1707 0.054521513 0.019513568 1.76E-09 8.754965208 0.203686755 FVEWLQNAEEESES(ph)EGEEN ddPTM_K562_Paclitaxel_30min_R1 2 FVEWLQNAEEESESEGEEN 19 0 E9PFD4;B5MCE7;B5MCH7;Q9Y6E2 E9PFD4 BZW2 Basic leucine zipper and W2 domain-containing protein 2 1 FVEWLQNAEEES(0.426)ES(0.574)EGEEN;FVEWLQNAEEES(0.125)ES(0.875)EGEEN 116.93 0.0001398 8837600 1483.51 1289.75 1722.79 1815.14 1675.14 1272.17 1370.77 1595.41 1105.9 1294.26 TRUE FALSE 1504.283717 1430.569267 1287.850357 1698.725045 1903.322428 1497.771487 1630.866452 1459.869962 1212.126636 1030.489102 1.459776445 1.388242985 1.249746703 1.648464833 1.84700879 1.453456893 1.582613973 1.416676761 1.176263421 1 10.00911353 -8.835414121 2.153889605 1.00448745 1.51876078 0.570889021 0.150727921 0.231743434 2.162997974 0.15725078 0.044555853 1.46E-09 8.835414121 0.51427333 FVHGPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 FVHGPSPR 8 0 Q5T200-2;Q5T200;Q5T9K0 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 FVHGPS(1)PR;FVHGPS(1)PR 117.81 0.0015903 21859000 2999.4 2568.8 3088 2934.6 2507.2 2655.1 2668.1 3001.3 2510.4 3117.6 TRUE FALSE 3041.400854 2849.270271 2308.396208 2746.387891 2848.723087 3125.944706 3174.358047 2746.320831 2751.535137 2482.231409 1.225268862 1.147866497 0.929968173 1.106418959 1.147646056 1.259328479 1.278832439 1.106391943 1.108492595 1 11.2774219 -3.986710712 16.50105101 1.136306862 1.224822452 0 0.103605664 0 0 0.025160947 0 0.000103107 3.986710712 0.08851559 FVINYDYPNSSEDYIHR ddPTM_K562_Paclitaxel_30min_R1 4 FVINYDYPNSSEDYIHR 17 0 J3KTA4;P17844-2;P17844 J3KTA4 DDX5 Probable ATP-dependent RNA helicase DDX5 0 ;;; 114.29 0.0011226 70752200 12508.2 11865.9 14158.6 12875.6 12069.7 11600.8 12465.8 14321.7 9467.3 15589.6 FALSE TRUE 12683.35339 13161.45909 10584.08632 12049.81665 13713.79748 13658.039 14831.12047 13104.98219 10376.67647 12412.43096 1.021826702 1.060344998 0.852700519 0.970786197 1.104843807 1.100351659 1.194860259 1.055794971 0.835990669 1 13.59949807 -6.743678401 24.57836368 1.061326546 0.973572867 0.103044462 0.100145642 422.2828998 584369.105 0.031146356 0.040114347 1.80E-07 6.743678401 -0.087753678 FVKPSFDQY(ph)IQPT(ph)MR ddPTM_K562_Paclitaxel_30min_R1 2 FVKPSFDQYIQPTMR 15 1 Q9NWZ5;Q9NWZ5-3;Q9NWZ5-2;Q9NWZ5-4 Q9NWZ5 UCKL1 Uridine-cytidine kinase-like 1 2 FVKPS(0.001)FDQY(1)IQPT(1)MR;FVKPSFDQY(1)IQPT(1)MR 74.147 0.013774 160042000 4345.9 3783.5 3722.6 3864.6 4112.8 3724.9 3676.3 4395.5 4573 4563.1 TRUE FALSE 4406.756008 4196.595325 2782.783589 3616.741853 4673.03299 4385.458715 4373.858733 4022.074839 5012.257083 3633.137715 1.21293393 1.155088426 0.765944979 0.995487134 1.286225119 1.207071974 1.203879147 1.107052679 1.379594575 1 11.82700034 -6.750289714 24.92992265 1.203473716 1.022099734 0.236226338 0.144570136 299.6345215 669960.2715 0.0436692 0.055839212 1.78E-07 6.750289714 -0.181373982 FVLMAT(ph)PNLSR ddPTM_K562_Paclitaxel_30min_R1 2 FVLMATPNLSR 11 0 A0A087X1U1;F5GXM9;E7EUN2;Q9UPQ3-2;Q9UPQ3 A0A087X1U1 AGAP1 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1" 1 FVLMAT(0.998)PNLS(0.002)R;FVLMAT(1)PNLSR 137.81 0.0018358 48341000 4604.2 4242.1 3428.9 3449.41 2958.64 3140.91 4747.7 4881.3 5133.4 5915 TRUE FALSE 4668.673005 4705.266824 2563.231787 3228.180282 3361.656858 3697.906288 5648.55129 4466.603097 5626.486007 4709.519753 0.99132677 0.999096951 0.544266066 0.685458486 0.713800352 0.785198169 1.199390084 0.948420079 1.194704832 1 12.20136424 -7.745864611 24.58538005 1.08133039 0.777275457 0.501422491 0.145914356 172.6114391 272473.9567 0.059292697 0.04575276 1.80E-08 7.745864611 -0.304054933 FVMGKSRPGEMT(ph)Y(ph)PGS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 FVMGKSRPGEMTYPGSR 17 2 Q7Z614-3 Q7Z614-3 3 FVMGKS(0.046)RPGEMT(0.957)Y(0.997)PGS(0.999)R 40.158 0.030796 56393000 0 0 0 0 0 0 0 69.663 0 0 TRUE FALSE 0 0 0 0 0 0 0 63.74469333 0 0 0 FVS(ph)EGDGGR ddPTM_K562_Paclitaxel_30min_R1 2 FVSEGDGGR 9 0 Q53EL6;Q53EL6-2 Q53EL6 PDCD4 Programmed cell death protein 4 1 FVS(1)EGDGGR;FVS(1)EGDGGR 105.4 0.0085651 60355000 4950 4247.6 5593.6 4947.4 3714.3 4117.2 4478.4 4792.1 4799.7 5636.4 TRUE FALSE 5019.315272 4711.367332 4181.426499 4630.095908 4220.250544 4847.327612 5328.153021 4384.981194 5260.732631 4487.698586 1.118460872 1.049840412 0.931752973 1.031730589 0.940404188 1.080136627 1.187279609 0.977111343 1.172256231 1 12.13176007 -7.48764599 24.2298444 1.089604934 1.012521571 0.1598393 0.078590542 710.9845961 488950.359 0.026970627 0.023774038 3.25E-08 7.48764599 -0.077083363 FWEGDFHR ddPTM_K562_Paclitaxel_30min_R1 4 FWEGDFHR 8 0 B4DKY1;P49589-2;P49589;P49589-3 B4DKY1 CARS "Cysteine--tRNA ligase, cytoplasmic" 0 ;;; 160.11 9.40E-17 33588500 11959.4 13047.3 14904.7 13592.6 12607 12158.1 12725 14912.8 9786.1 16528.6 FALSE TRUE 12126.8685 14471.84834 11141.82415 12720.83147 14324.28684 14314.16833 15139.50232 13645.86456 10726.09863 13160.06225 0.921490208 1.099679323 0.846639168 0.966623959 1.088466496 1.087697616 1.150412668 1.036914895 0.815049232 1 13.68387869 -5.193179662 20.54928139 1.014100117 0.921481121 0.060628003 0.103677192 38965.51047 11725416.48 0.026857655 70.09876089 6.41E-06 5.193179662 -0.092618996 FWEVISDEHGIDPTGSYHGDSDLQLER ddPTM_K562_Paclitaxel_30min_R1 1 FWEVISDEHGIDPTGSYHGDSDLQLER 27 0 Q13885;Q9BVA1 Q13885 TUBB2A;TUBB2B Tubulin beta-2A chain;Tubulin beta-2B chain 0 77.939 7.07E-05 161990000 459.89 299.02 361.57 325.43 417.61 190.82 509.93 560.83 520.73 679.14 FALSE TRUE 466.3298789 331.6680148 270.2871817 304.5583764 474.4955522 224.6592478 606.6865555 513.1839909 570.7484432 540.7308952 0.862406574 0.613369825 0.499855259 0.56323465 0.877507752 0.415473297 1.121975017 0.949056167 1.055512915 1 9.078766978 -7.7733778 24.99722017 1.02739077 0.638614059 0.650466756 0.141117777 141.7711675 296844.2269 0.057578742 0.039160202 1.69E-08 7.7733778 -0.388776711 FWEVISDEHGIDPTGTYHGDS(ph)DLQLDR ddPTM_K562_Paclitaxel_30min_R1 3 FWEVISDEHGIDPTGTYHGDSDLQLDR 27 0 Q5JP53;P07437 Q5JP53 TUBB Tubulin beta chain 1 FWEVISDEHGIDPT(0.004)GT(0.004)Y(0.003)HGDS(0.989)DLQLDR;FWEVISDEHGIDPT(0.058)GT(0.028)Y(0.025)HGDS(0.889)DLQLDR;FWEVISDEHGIDPT(0.026)GT(0.022)Y(0.178)HGDS(0.775)DLQLDR 99.907 5.90E-08 26011800 1947.25 2089.67 1771.26 1775.66 1313.14 1409.39 2425.9 3158.15 2125.7 3464.55 TRUE FALSE 1974.517508 2317.827237 1324.083506 1661.777115 1492.0119 1659.325528 2886.201861 2889.845445 2329.882983 2758.472808 0.715800969 0.840257417 0.480006003 0.602426499 0.540883309 0.60153775 1.046304264 1.047625134 0.844627859 1 11.42965404 -7.758383477 24.99993853 0.988608109 0.627559465 0.730380376 0.10549529 43.40778337 355117.496 0.044127218 0.032688419 1.74E-08 7.758383477 -0.361048644 FWEVISDEHGIDPTGTYHGDSDLQLDR ddPTM_K562_Paclitaxel_30min_R1 2 FWEVISDEHGIDPTGTYHGDSDLQLDR 27 0 Q5JP53;P07437 Q5JP53 TUBB Tubulin beta chain 0 ; 180.21 9.50E-41 202159000 1393.41 1708.6 1463.34 1494.59 1301.01 1089.32 2071.8 2532.1 1757.53 3599.9 FALSE TRUE 1412.922039 1895.150726 1093.901719 1398.733687 1478.229588 1282.495607 2464.913234 2316.9823 1926.348609 2866.238404 0.492953425 0.661197869 0.381650639 0.488003261 0.515738533 0.447449035 0.85998193 0.808370405 0.672082478 1 11.4849429 -7.762753554 24.99990248 0.819139617 0.500344008 0.732481098 0.099661567 19.08322339 363010.7828 0.039290653 0.028142984 1.73E-08 7.762753554 -0.31879561 FY(ph)MLMRMVLNES(ph)LK ddPTM_K562_Paclitaxel_30min_R1 1 FYMLMRMVLNESLK 14 1 P56182 P56182 RRP1 Ribosomal RNA processing protein 1 homolog A 2 FY(1)MLMRMVLNES(1)LK 40.715 0.03084 0 534.15 502.72 706.87 455.69 530.33 557.55 342.74 533.32 827.8 493.64 TRUE FALSE 541.629748 557.6086697 528.411926 426.464083 602.5699246 656.4236641 407.7731258 488.0111371 907.3138887 393.035897 1.378066869 1.418721989 1.344436806 1.085051229 1.533116769 1.67013667 1.037495885 1.241645205 2.308475881 1 8.618517274 FY(ph)T(ph)HVLMS(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 FYTHVLMSK 9 0 A0A140T8W2;Q9H4I0-2;Q9H4I0 A0A140T8W2 RAD21L1 Double-strand-break repair protein rad21-like protein 1 3 FY(1)T(1)HVLMS(1)K 75.566 0.012908 146330000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 FYCDYCDTYLTHDSPSVR ddPTM_K562_Paclitaxel_30min_R1 1 FYCDYCDTYLTHDSPSVR 18 0 P09234;A0A0A0MRR7 P09234 SNRPC U1 small nuclear ribonucleoprotein C 0 163.91 2.79E-09 10386000 547.21 586.29 545.93 615.12 467.6 479.06 661.03 832.61 487.17 904.21 FALSE TRUE 554.8726283 650.3031249 408.1032195 575.6689564 531.2950365 564.0145647 786.4569917 761.8745835 533.9648552 719.9315057 0.770729748 0.903284715 0.566863953 0.799616285 0.737979978 0.78342809 1.092405299 1.058259817 0.741688412 1 9.491715845 -7.655454491 7.135693138 0.977176474 0.756632448 0.445070299 0.116592012 0.208086679 12.52016326 0.04454957 0.034340336 2.21E-08 7.655454491 -0.220544025 FYEEVHDLER ddPTM_K562_Paclitaxel_30min_R1 6 FYEEVHDLER 10 0 F8VRJ2;F5H4R6;H0YHC3;F8W020;F8W118;F8VXI6;F8VUX1;F8VY35;P55209;F8VV59;B7Z9C2;H0YIV4;F8W0J6;P55209-3;P55209-2;F8W543;H0YH88;F8VVB5;E9PNJ7;C9J6D1;Q99733;Q99733-2;E9PS34;A8MXH2;E9PKT8;C9JZI7;E9PNW0;E9PJJ2 F8VRJ2;E9PNJ7 NAP1L1;NAP1L4 Nucleosome assembly protein 1-like 1;Nucleosome assembly protein 1-like 4 0 ;;;;; 179.42 0.00013589 476722700 39512.9 38012.9 45565.9 41814.9 36816.8 36860.2 37729.6 43387.5 35461.1 46846.7 FALSE TRUE 40066.20251 42163.27697 34062.22499 39133.07947 41831.87147 43396.83893 44888.59464 39701.46106 38867.2971 37299.31683 1.074180599 1.130403465 0.913213107 1.049163438 1.121518436 1.163475437 1.20346962 1.064401829 1.042037775 1 15.18686159 FYEEVHDLERK ddPTM_K562_Paclitaxel_30min_R1 4 FYEEVHDLERK 11 1 F8VRJ2;F5H4R6;H0YHC3;F8W020;F8W118;F8VXI6;F8VUX1;F8VY35;P55209;F8VV59;B7Z9C2;H0YIV4;F8W0J6;P55209-3;P55209-2;F8W543;H0YH88;F8VVB5;E9PNJ7;C9J6D1;Q99733;Q99733-2;E9PS34;A8MXH2;E9PKT8;C9JZI7;E9PNW0;E9PJJ2 F8VRJ2;E9PNJ7 NAP1L1;NAP1L4 Nucleosome assembly protein 1-like 1;Nucleosome assembly protein 1-like 4 0 ;;; 83.883 0.013139 55228400 18016.2 16358.7 29759.8 20184.5 15463.7 14205.5 13516.4 19404.7 23134.6 23102 FALSE TRUE 18268.48238 18144.79819 22246.57043 18889.95651 17570.11774 16724.64597 16081.06634 17756.14961 25356.7817 18393.79972 0.99318698 0.986462746 1.209460295 1.026974133 0.955219585 0.909254544 0.8742656 0.965333421 1.378550494 1 14.16693192 -8.72067188 24.99937024 1.189276645 0.99073685 0.307664075 0.119557286 158.3042477 97075.17623 0.082147124 0.031047936 1.90E-09 8.72067188 -0.198539795 FYHEELNAPIRR ddPTM_K562_Paclitaxel_30min_R1 2 FYHEELNAPIRR 12 1 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 0 ; 155.53 5.96E-05 57165000 1849.93 1464.26 2127.54 1854.17 1768.77 1470.78 1667.14 2103.3 1533.77 1970.02 FALSE TRUE 1875.834728 1624.132859 1590.416214 1735.251835 2009.70642 1731.602182 1983.471112 1924.611537 1681.095462 1568.528843 1.195919818 1.035449789 1.013954076 1.10629259 1.281268387 1.10396579 1.264542327 1.227016988 1.071765731 1 10.61519634 -6.535921475 24.98555019 1.174034726 1.074305608 0.107240089 0.093859784 360.7092659 690995.7135 0.026595906 0.03435561 2.91E-07 6.535921475 -0.099729119 FYVLSMFPY(ph)PS(ph)GK ddPTM_K562_Paclitaxel_30min_R1 1 FYVLSMFPYPSGK 13 0 C9JYR8;A0A499FJL2;A0A494C1E0;Q15031 C9JYR8 LARS2 "Probable leucine--tRNA ligase, mitochondrial" 2 FYVLSMFPY(1)PS(1)GK 107.97 0.021627 17752000 1892.5 1968.9 1648.6 1824.8 1619.2 1435.9 1849.1 2171.2 1802.8 1863 TRUE FALSE 1919.000839 2183.87116 1232.39054 1707.765496 1839.762453 1690.536704 2199.957072 1986.743008 1975.966995 1483.319577 1.293720428 1.472286346 0.830832788 1.151313258 1.240300796 1.139698235 1.483130881 1.33938973 1.332124935 1 10.53461374 -7.707235289 24.99999309 1.316948083 1.185417585 0.056039253 0.188368302 227.3109003 104839.3974 0.072552168 0.05619862 1.96E-08 7.707235289 -0.131530497 GAAAADLLSS(ph)SPESQHGGTQSPGGGQPLLQPTK ddPTM_K562_Paclitaxel_30min_R1 1 GAAAADLLSSSPESQHGGTQSPGGGQPLLQPTK 33 0 Q9H3S7 Q9H3S7 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 1 GAAAADLLS(0.064)S(0.303)S(0.303)PES(0.303)QHGGT(0.026)QS(0.001)PGGGQPLLQPTK 78.836 8.45E-06 13802000 2227.4 1851 3130 2499.8 2247.3 1891.6 1799.1 2305.8 1744.7 2669.2 TRUE FALSE 2258.590472 2053.09844 2339.792789 2339.474017 2553.420307 2227.048701 2140.469833 2109.907898 1912.286231 2125.215575 1.062758291 0.966065967 1.10096727 1.100817274 1.201487669 1.04791661 1.007177746 0.992797118 0.89980812 1 11.05339348 -7.922797174 2.130261859 0.960007041 1.083323734 0.445906971 0.059577488 0.329295918 3.007453626 0.035202947 0.019987982 1.19E-08 7.922797174 0.123316693 GAAAADLLSS(ph)SPESQHGGTQSPGGGQPLLQPTKVDAAEGR ddPTM_K562_Paclitaxel_30min_R1 1 GAAAADLLSSSPESQHGGTQSPGGGQPLLQPTKVDAAEGR 40 1 Q9H3S7 Q9H3S7 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 1 GAAAADLLS(0.136)S(0.413)S(0.413)PES(0.034)QHGGT(0.001)QS(0.003)PGGGQPLLQPTKVDAAEGR 86.004 3.13E-11 86164000 1689.2 1329.5 2820.5 1916.1 1451.3 1209 1307 1962.7 1362.4 2093.2 TRUE FALSE 1712.854012 1474.659306 2108.429891 1793.209922 1648.991631 1423.399175 1554.996427 1795.956384 1493.264607 1666.604691 1.027750624 0.884828486 1.265104978 1.075965964 0.989431771 0.854071264 0.933032551 1.077613902 0.895992082 1 10.70269623 -6.89271569 4.793221415 0.952589689 1.064356914 0.206741026 0.102644451 0.363981496 13.85080635 0.033603361 0.038430244 1.28E-07 6.89271569 0.111767225 GAAAADLLSSSPESQHGGT(ph)QSPGGGQPLLQPTKVDAAEGR ddPTM_K562_Paclitaxel_30min_R1 1 GAAAADLLSSSPESQHGGTQSPGGGQPLLQPTKVDAAEGR 40 1 Q9H3S7 Q9H3S7 PTPN23 Tyrosine-protein phosphatase non-receptor type 23 1 GAAAADLLS(0.063)S(0.218)S(0.218)PES(0.218)QHGGT(0.22)QS(0.063)PGGGQPLLQPTKVDAAEGR 63.833 1.23E-05 107600000 841.25 730.82 1246.2 791.82 823.68 779.3 578.59 817.11 853.37 959.83 TRUE FALSE 853.0300955 810.6133991 931.5813972 741.0362093 935.879161 917.4979131 688.3744321 747.6914053 935.3400015 764.2161191 1.116215785 1.06071225 1.219002549 0.969668384 1.224626303 1.200573882 0.900758849 0.97837691 1.223920797 1 9.577836878 -7.742660898 24.99992263 1.023962133 1.129382117 0.196158084 0.105063645 413.2595676 550175.3187 0.040054887 0.030971319 1.81E-08 7.742660898 0.105419984 GAAS(ph)QARGS(ph)DSEDGEFEIQAEDDAR ddPTM_K562_Paclitaxel_30min_R1 1 GAASQARGSDSEDGEFEIQAEDDAR 25 1 Q8TDD1-2;Q8TDD1;H0YHZ9 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 2 GAAS(0.68)QARGS(0.859)DS(0.461)EDGEFEIQAEDDAR 54.072 0.019971 16718000 978.76 929.71 1526 1170.6 1032.5 1265.7 1138.7 1375.7 1185.9 1073.6 TRUE FALSE 992.4656597 1031.218882 1140.742427 1095.522955 1173.14398 1490.154124 1354.762381 1258.825698 1299.810994 854.7997307 1.161050506 1.206386531 1.334514256 1.281613594 1.372419689 1.743278654 1.584888638 1.472655703 1.520602952 1 9.739442643 -6.936554072 3.931881444 1.506444393 1.250737687 0.218381059 0.184410901 0.280628698 8.794677088 0.05726224 0.064653936 1.16E-07 6.936554072 -0.255706707 GAASQARGS(ph)DS(ph)EDGEFEIQAEDDAR ddPTM_K562_Paclitaxel_30min_R1 3 GAASQARGSDSEDGEFEIQAEDDAR 25 1 Q8TDD1-2;Q8TDD1;H0YHZ9 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 2 GAAS(0.296)QARGS(0.941)DS(0.763)EDGEFEIQAEDDAR;GAAS(0.179)QARGS(0.936)DS(0.885)EDGEFEIQAEDDAR;GAAS(0.004)QARGS(0.997)DS(0.999)EDGEFEIQAEDDAR 99.957 1.88E-05 50976000 2201.65 2137.69 2526.43 2063.45 2160.92 2039.16 1929.97 2207.29 2062.05 2213.67 TRUE FALSE 2232.479893 2371.090223 1888.6015 1931.109553 2455.273889 2400.776395 2296.171732 2019.766937 2260.119116 1762.522839 1.266638845 1.345281985 1.071533065 1.095650797 1.393045148 1.362124985 1.302775591 1.145952207 1.28232047 1 10.78342624 -10.41961397 0.935493684 0.991661658 1.252068341 0.334623984 0.106264918 30.7556916 17.79923401 1.101712431 0.03616565 3.81E-11 10.41961397 0.260406683 GAASTLVPGVSET(ph)SASPGSPSVR ddPTM_K562_Paclitaxel_30min_R1 1 GAASTLVPGVSETSASPGSPSVR 23 0 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2 A0A0A0MS59 SRCAP Helicase SRCAP 1 GAASTLVPGVS(0.027)ET(0.367)S(0.303)AS(0.303)PGS(0.001)PSVR 143.23 8.10E-17 17208000 1991.8 2267.3 1944.4 1681.7 1807.1 1998.3 1933.6 2192.1 2223.7 2428.7 TRUE FALSE 2019.691345 2514.851482 1453.512172 1573.843289 2053.257614 2352.670447 2300.490506 2005.867422 2437.296321 1933.729607 1.044453856 1.300518683 0.751662573 0.813890051 1.061812162 1.216649132 1.189665038 1.037305017 1.260412165 1 10.91717036 -7.000106355 24.999925 1.14541809 0.978716183 0.197786607 0.154819067 6.690444576 1573249.292 0.050972226 0.057189648 1.00E-07 7.000106355 -0.166701907 GAASTLVPGVSETSAS(ph)PGSPSVR ddPTM_K562_Paclitaxel_30min_R1 2 GAASTLVPGVSETSASPGSPSVR 23 0 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2 A0A0A0MS59 SRCAP Helicase SRCAP 1 GAASTLVPGVS(0.002)ET(0.212)S(0.309)AS(0.454)PGS(0.022)PS(0.001)VR;GAASTLVPGVS(0.005)ET(0.091)S(0.324)AS(0.56)PGS(0.016)PS(0.003)VR 188.27 4.96E-24 214440000 6139.3 5529.1 6030.8 6281.3 5169.3 5478.9 5936.5 6651.3 6064.6 6440.8 TRUE FALSE 6225.269141 6132.785836 4508.249952 5878.445532 5873.446177 6450.505987 7062.919884 6086.230549 6647.131927 5128.161425 1.213937828 1.19590343 0.879116233 1.146306648 1.145331765 1.257859387 1.377281115 1.186825071 1.296201772 1 12.32422596 -7.056264311 2.850502392 1.244230528 1.100002582 0.148582096 0.12522523 0.433283763 6.973121394 0.043532037 0.045687756 8.78E-08 7.056264311 -0.144227946 GACRLPLCSLPGEPGNGPDQQLQRS(ph)PPEFQ ddPTM_K562_Paclitaxel_30min_R1 1 GACRLPLCSLPGEPGNGPDQQLQRSPPEFQ 30 2 Q96GX2 Q96GX2 ATXN7L3B Putative ataxin-7-like protein 3B 1 GACRLPLCSLPGEPGNGPDQQLQRS(1)PPEFQ 90.062 4.55E-06 18625000 182.15 238.89 226.39 189.52 237.43 230.04 241.17 214.77 673.51 283.7 TRUE FALSE 184.700662 264.9728181 169.2350445 177.3650355 269.7719857 270.8343641 286.9307485 196.5239479 738.2036448 225.8817843 0.817687281 1.1730597 0.749219531 0.785211769 1.194306069 1.199009318 1.270269532 0.870030085 3.26809728 1 7.819424122 -8.713109298 24.99998966 2.134069008 1.018247577 0.410770893 0.53964493 86.99710998 45001.47117 0.330646521 0.124971988 1.94E-09 8.713109298 -1.11582143 GADAGSSGGTGPTEGYS(ph)PPAASTR ddPTM_K562_Paclitaxel_30min_R1 2 GADAGSSGGTGPTEGYSPPAASTR 24 0 J3KT76;J3KSI9;Q969W3;Q969W3-2 J3KT76 FAM104A Protein FAM104A 1 GADAGSSGGTGPT(0.206)EGYS(0.781)PPAAS(0.007)T(0.007)R;GADAGSSGGTGPT(0.001)EGY(0.003)S(0.996)PPAASTR 147.35 1.10E-25 39010000 887.07 1024.02 1146.82 1182.16 924.12 1007.23 1201.53 1330.47 1127.03 1233.43 TRUE FALSE 899.4917168 1135.825967 857.2911073 1106.341549 1050.000789 1185.848098 1429.514045 1217.438269 1235.286267 982.056289 0.915926843 1.156579291 0.872955163 1.126556147 1.069185953 1.207515406 1.455633512 1.239682779 1.257856888 1 9.939661908 -7.183236907 2.290959526 1.265185231 1.019678579 0.377077762 0.130558775 0.295659709 3.045262139 0.047375503 0.046032977 6.56E-08 7.183236907 -0.245506652 GADNDGS(ph)GS(ph)ESGYTTPK ddPTM_K562_Paclitaxel_30min_R1 3 GADNDGSGSESGYTTPK 17 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 2 GADNDGS(0.965)GS(0.983)ES(0.026)GY(0.004)T(0.019)T(0.003)PK;GADNDGS(0.994)GS(0.967)ES(0.034)GYT(0.001)T(0.003)PK;GADNDGS(0.991)GS(0.52)ES(0.387)GY(0.004)T(0.089)T(0.01)PK 136.43 4.83E-07 67298000 20207.8 16347.6 29352.9 21092.7 16578.2 14696.5 14665 22393.2 23037.1 26638.5 TRUE FALSE 20490.77155 18132.48625 21942.39736 19739.90863 18836.43151 17302.71793 17447.60719 20490.75789 25249.91639 21209.55908 0.966110209 0.854920472 1.034552264 0.930708109 0.888110471 0.815798097 0.822629416 0.966109565 1.190496997 1 14.37242701 -8.565608931 7.097327222 1.09229009 0.901779816 0.507398781 0.075392994 0.171914062 22.10600868 0.052372501 0.019631581 2.72E-09 8.565608931 -0.190510273 GADNDGS(ph)GSESGYTT(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 GADNDGSGSESGYTTPK 17 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 2 GADNDGS(0.994)GS(0.004)ES(0.001)GYT(0.046)T(0.954)PK 151.63 2.06E-07 9132500 2426.9 2217.3 4107.3 2816.3 2230.5 2776.2 1601.3 2501.4 1556.5 3266.6 TRUE FALSE 2460.884088 2459.392312 3070.361317 2635.675123 2534.331863 3268.52009 1905.138316 2288.890457 1706.00878 2600.865127 0.946179047 0.945605478 1.180515393 1.013384007 0.974418795 1.256704954 0.732501773 0.880049655 0.655938965 1 11.34477587 -7.783135422 24.99740121 0.807126689 1.04837946 0.454298291 0.12629582 214.6409538 247299.2084 0.050902441 0.034352299 1.65E-08 7.783135422 0.241252771 GADNDGS(ph)GSESGYTTPK ddPTM_K562_Paclitaxel_30min_R1 3 GADNDGSGSESGYTTPK 17 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 GADNDGS(0.989)GS(0.01)ESGYTTPK;GADNDGS(0.989)GS(0.011)ESGYTTPK;GADNDGS(0.989)GS(0.011)ESGYTTPK 215.64 2.97E-23 418886000 10617.3 9752.2 19385.7 12938.1 10312.1 9298.5 8075.4 12038.9 12232 12683.1 TRUE FALSE 10765.97496 10816.97818 14491.54028 12108.30817 11716.78261 10947.45842 9607.664994 11016.1203 13406.93825 10098.27726 1.066119961 1.071170646 1.435050742 1.199046913 1.160275392 1.084091686 0.951416241 1.090891052 1.327646084 1 13.30182157 -7.087553812 3.423906849 1.088288958 1.199987998 0.118481422 0.131793246 0.565498565 12.59130045 0.047581677 0.04883301 8.17E-08 7.087553812 0.111699039 GADNDGSGSESGYTT(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 GADNDGSGSESGYTTPK 17 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 GADNDGSGSESGYT(0.121)T(0.879)PK;GADNDGSGSESGYT(0.268)T(0.732)PK 160.43 2.78E-07 28635000 7450.3 6223.9 11690.8 8350.1 6911.5 7256.8 5678.3 8783.7 4776.4 10300 TRUE FALSE 7554.627186 6903.44645 8739.31295 7814.56196 7852.963313 8543.691589 6755.727782 8037.469859 5235.194562 8200.854346 0.92120002 0.841796008 1.065658842 0.95289608 0.957578684 1.041805064 0.823783413 0.980077138 0.63837185 1 13.0015585 -7.77765464 24.99870391 0.858897851 0.961851545 0.177386471 0.108531959 436.136484 672375.746 0.043390756 0.029354315 1.67E-08 7.77765464 0.102953693 GADSLEDFLYHEGYACTSIHGDR ddPTM_K562_Paclitaxel_30min_R1 2 GADSLEDFLYHEGYACTSIHGDR 23 0 A0A2R8Y4A4;A0A2R8YFS5;A0A2R8YDT5;A0A2R8YFR4;A0A2R8YCW1;A0A2R8Y5G6;A0A0J9YVQ7;O00571;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;A0A0D9SG12;A0A0D9SFB3;F6S8Q4;A0A2R8Y7T2;A0A0D9SF53;O00571-2;O15523-2;O15523;A0A2R8YDH3 A0A2R8Y4A4 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 ; 169.85 1.90E-19 17238400 3264.5 3401.4 3508 3412.2 2943.22 3229 3175.4 4016.1 3231.28 4491.6 FALSE TRUE 3310.213072 3772.776355 2622.362014 3193.356764 3344.136393 3801.617813 3777.915573 3674.907237 3541.658882 3576.209455 0.925620581 1.054965153 0.733279761 0.892944556 0.935106412 1.063029965 1.056402211 1.027598435 0.990338773 1 11.80421552 -7.113309256 4.340817713 1.030528757 0.901840286 0.388330537 0.075458171 0.255074439 7.934935294 0.026406652 0.026663053 7.70E-08 7.113309256 -0.128688471 GAEETSWS(ph)GEER ddPTM_K562_Paclitaxel_30min_R1 2 GAEETSWSGEER 12 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 GAEETSWS(0.999)GEER;GAEETSWS(1)GEER 184.96 0.00011276 513720000 2913.9 3412.7 3636.2 3852.7 3114.5 2667.8 3079.9 3261.8 3162.3 3446.6 TRUE FALSE 2954.70359 3785.310127 2718.196338 3605.605066 3538.747629 3140.896872 3664.294947 2984.68973 3466.053045 2744.181028 1.076715989 1.379395196 0.990530985 1.313909334 1.289545986 1.144566208 1.335296363 1.087643162 1.263055538 1 11.42215994 -11.09742884 5.367861417 0.999996981 1.211260692 0.207890529 0.122292855 4.04E-06 6.80E-07 0.108347677 0.026277796 7.99E-12 11.09742884 0.211263711 GAES(ph)PFEEK ddPTM_K562_Paclitaxel_30min_R1 4 GAESPFEEK 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 GAES(1)PFEEK;GAES(1)PFEEK;GAES(1)PFEEK;GAES(1)PFEEK 155.26 6.06E-06 418169000 15568.9 13302.1 27179.5 17261 13812.9 12288.1 11831.3 17673.8 13602.6 21405.6 TRUE FALSE 15786.91263 14754.46826 20317.69907 16153.95672 15694.45083 14467.222 14076.22741 16172.30037 14909.19051 17043.12697 0.926292027 0.865713686 1.192134466 0.947828221 0.920866861 0.848859603 0.825918121 0.948904529 0.874791964 1 14.05690244 -6.710578272 3.681633956 0.892907715 0.993012093 0.159549811 0.091087943 0.387407422 10.74600092 0.028700268 0.036604646 1.95E-07 6.710578272 0.100104378 GAGDGS(ph)DEEVDGKADGAEAKPAE ddPTM_K562_Paclitaxel_30min_R1 2 GAGDGSDEEVDGKADGAEAKPAE 23 2 P35579-2;P35579 P35579-2 MYH9 Myosin-9 1 GAGDGS(1)DEEVDGKADGAEAKPAE;GAGDGS(1)DEEVDGKADGAEAKPAE 70.983 0.016357 35021000 3743.4 2675.1 9112.8 4288.2 2828.5 1976.97 2064.65 3986.4 3418.1 5417.7 TRUE FALSE 3795.819149 2967.176465 6812.160934 4013.174045 3213.789587 2327.557871 2456.406559 3647.730438 3746.423777 4313.569766 0.87997166 0.687870285 1.579239772 0.930360296 0.745041755 0.539589713 0.56946026 0.845640765 0.868520502 1 12.07466657 -6.655104386 4.59246584 0.733482261 1.047240888 0.210303804 0.246949237 0.315971154 11.34402477 0.076871444 0.099785146 2.21E-07 6.655104386 0.313758627 GAGNCPECGT(ph)PLRK ddPTM_K562_Paclitaxel_30min_R1 1 GAGNCPECGTPLRK 14 1 P51948;P51948-2 P51948 MNAT1 CDK-activating kinase assembly factor MAT1 1 GAGNCPECGT(1)PLRK 101.2 0.02122 3140700 2549.8 2342.2 3480.6 2911.9 2547.6 2216.5 2007.9 2958.4 2166.3 3426 TRUE FALSE 2585.505067 2597.929317 2601.879482 2725.143767 2894.626251 2609.565154 2388.888543 2707.065454 2374.382794 2727.779319 0.947842462 0.952397175 0.9538453 0.99903381 1.061165847 0.956662856 0.875763126 0.992406327 0.870445339 1 11.41351122 -7.521906872 24.99989724 0.931476904 0.983297939 0.172745606 0.04962572 63.0773659 1622641.601 0.01868846 0.014665257 3.01E-08 7.521906872 0.051821035 GAGQQQS(ph)QEMMEVDR ddPTM_K562_Paclitaxel_30min_R1 1 GAGQQQSQEMMEVDR 15 0 C9JRC4;B5MBZ8;Q15435-3;Q15435 C9JRC4 PPP1R7 Protein phosphatase 1 regulatory subunit 7 1 GAGQQQS(1)QEMMEVDR 108.66 0.0023063 11358000 1256.6 1211.2 1180.2 1209.5 1149.7 1044.6 1038.6 1335.9 737.53 1218.1 TRUE FALSE 1274.196277 1343.442912 882.2439135 1131.928084 1306.308605 1229.845143 1235.668928 1222.406957 808.3730519 969.8505514 1.313806828 1.385206113 0.909669961 1.167115987 1.346917422 1.268076964 1.274081792 1.260407549 0.833502699 1 9.921618643 -8.754810229 24.96849464 0.916751311 1.2375639 0.498657524 0.129882223 118.5811496 446645.1697 0.096564603 0.034599508 1.76E-09 8.754810229 0.320812589 GAHAPQELPQAKGS(ph)DDELFLGGSNQDSVQGLGR ddPTM_K562_Paclitaxel_30min_R1 3 GAHAPQELPQAKGSDDELFLGGSNQDSVQGLGR 33 1 Q96JB3-2;Q96JB3 Q96JB3-2 HIC2 Hypermethylated in cancer 2 protein 1 GAHAPQELPQAKGS(1)DDELFLGGSNQDSVQGLGR;GAHAPQELPQAKGS(0.999)DDELFLGGS(0.001)NQDSVQGLGR;GAHAPQELPQAKGS(0.998)DDELFLGGS(0.002)NQDSVQGLGR 95.654 1.08E-10 456894000 6324.93 4739.08 8858.9 6520 4720.73 5016.21 4526.26 6153.6 5994.86 8012.8 TRUE FALSE 6413.498534 5256.508781 6622.36113 6101.836382 5363.773349 5905.764412 5385.094206 5630.81327 6570.693089 6379.786962 1.005284122 0.82393171 1.038022299 0.956432624 0.8407449 0.925699314 0.844086838 0.882602084 1.02992359 1 12.63929253 -8.766597824 24.99973228 1.014961848 0.91264431 0.261273342 0.067438459 180.9767894 877031.4568 0.057835289 0.016722457 1.71E-09 8.766597824 -0.102317538 GAHTMCASS(ph)LSSPR ddPTM_K562_Paclitaxel_30min_R1 1 GAHTMCASSLSSPR 14 0 Q8NG48 Q8NG48 LINS Protein Lines homolog 1 GAHTMCAS(0.001)S(0.374)LS(0.374)S(0.251)PR 142.4 6.04E-06 10077000 1250.5 1252.8 1346.3 1161.3 1215.8 960.54 831.61 1154 1261.9 1233 TRUE FALSE 1268.010858 1389.584941 1006.409914 1086.819416 1381.412544 1130.878282 989.4036562 1055.960497 1383.111133 981.7139232 1.291629698 1.415468303 1.025155995 1.10706326 1.407143681 1.151942797 1.007832967 1.075629541 1.40887391 1 9.939158866 -7.503041745 24.41132004 1.122315311 1.242307845 0.133838332 0.154076831 1312.724586 1615436.921 0.05633009 0.048986478 3.14E-08 7.503041745 0.119992534 GAHTMCASSLSS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 GAHTMCASSLSSPR 14 0 Q8NG48 Q8NG48 LINS Protein Lines homolog 1 GAHTMCASS(0.051)LS(0.228)S(0.721)PR 124.04 0.00039937 10466000 1088.9 1393.8 1346.7 1480.9 1230.5 1186.5 1234.6 1565.2 1451.2 1463.4 TRUE FALSE 1104.14796 1545.979798 1006.708929 1385.921702 1398.114933 1396.909116 1468.858905 1432.22649 1590.594244 1165.158277 0.947637743 1.326841021 0.864010452 1.189470761 1.199935631 1.198900736 1.260651822 1.229211961 1.365131481 1 10.18631023 -6.49831644 24.66788705 1.219984843 1.066315811 0.211080784 0.139617928 984.5187906 988750.8846 0.037019433 0.054583785 3.17E-07 6.49831644 -0.153669031 GAILSEEELAAMS(ph)PTAAAVAK ddPTM_K562_Paclitaxel_30min_R1 3 GAILSEEELAAMSPTAAAVAK 21 0 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 1 GAILSEEELAAMS(0.998)PT(0.002)AAAVAK;GAILS(0.045)EEELAAMS(0.949)PT(0.006)AAAVAK;GAILS(0.001)EEELAAMS(0.977)PT(0.023)AAAVAK 229.22 9.25E-54 54332200 4042.9 3734.04 5660.7 3964.62 3473.7 3118.03 3323.66 4643.11 3476.55 4815.9 TRUE FALSE 4099.513073 4141.735115 4231.586274 3710.347018 3946.87675 3670.968841 3954.307134 4248.648824 3810.488161 3834.416936 1.069135971 1.080147304 1.103580113 0.967643081 1.029329052 0.957373416 1.031266865 1.108029955 0.993759475 1 11.9047915 -6.245522792 24.81610132 1.016175199 1.08387375 0.400919321 0.040043262 833.0780653 1298880.182 0.011345106 0.019557744 5.68E-07 6.245522792 0.067698551 GAILSEEELAAMSPT(ph)AAAVAK ddPTM_K562_Paclitaxel_30min_R1 1 GAILSEEELAAMSPTAAAVAK 21 0 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 1 GAILSEEELAAMS(0.306)PT(0.694)AAAVAK 208.34 2.08E-142 0 709.94 627.94 1172.7 816 515.55 425.81 515.25 937.05 660.1 741.03 TRUE FALSE 719.8813504 696.5006128 876.6373812 763.6654123 585.7766383 501.3214248 613.0159977 857.4417536 723.5055544 590.0076792 1.220122001 1.180494148 1.485806731 1.29433131 0.992828838 0.849686271 1.038996642 1.453272193 1.22626464 1 9.204589922 -6.735273308 21.75306345 1.101255218 1.300612406 0.254898876 0.168510764 87.27403993 72552.685 0.0559496 0.072179993 1.84E-07 6.735273308 0.199357189 GAKEEHGGLIRS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 GAKEEHGGLIRSPR 14 2 P26368;P26368-2 P26368 U2AF2 Splicing factor U2AF 65 kDa subunit 1 GAKEEHGGLIRS(1)PR 70.134 0.024569 2354200000 4504.1 4396.2 7047.1 5544.1 4798.9 3945.9 3757.5 5304.6 4257.9 6233.7 TRUE FALSE 4567.171296 4876.191983 5267.972448 5188.52624 5452.591426 4645.649962 4470.46601 4853.94112 4666.89032 4963.268518 0.920194279 0.982455808 1.061391788 1.045384956 1.098588844 0.936006171 0.900710085 0.977972701 0.940285681 1 12.27707479 -7.305361662 24.9785285 0.946475394 1.022960028 0.322074455 0.050990526 556.8332501 316668.4413 0.019023062 0.01677684 4.95E-08 7.305361662 0.076484634 GAKKT(ph)S(ph)H ddPTM_K562_Paclitaxel_30min_R1 1 GAKKTSH 7 2 P78383;P78383-2 P78383 SLC35B1 Solute carrier family 35 member B1 2 GAKKT(1)S(1)H 116 0.0029002 66132000 1624.8 1251.1 1664.9 1521.7 1533.1 1578.1 1463.8 1455.4 1329.6 1533.8 TRUE FALSE 1647.552213 1387.699329 1244.575404 1424.104973 1741.934176 1857.953877 1741.548408 1331.754686 1457.314021 1221.210718 1.349113784 1.136330781 1.019132395 1.166141888 1.426399351 1.521403186 1.426083462 1.090519978 1.193335433 1 10.25409644 -8.822129292 1.714992982 1.025730051 1.278862028 0.232618114 0.153503245 0.591360325 3.584302513 0.166079948 0.048894834 1.51E-09 8.822129292 0.253131977 GALHT(ph)VSHEDIR ddPTM_K562_Paclitaxel_30min_R1 1 GALHTVSHEDIR 12 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2;H0YD72 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 GALHT(0.501)VS(0.499)HEDIR 98.592 0.010536 54104000 3133.7 3240 3522.5 3270 2856.1 2305.6 2365 2102 1648.4 2129 TRUE FALSE 3177.581468 3593.754157 2633.201309 3060.276836 3245.149174 2714.465788 2813.746404 1923.42198 1806.736185 1695.108631 1.874559193 2.120073068 1.55341154 1.805357355 1.914419592 1.601352113 1.659920994 1.134689508 1.065852743 1 10.72716202 -8.197072374 1.259693932 0.97631173 1.843905187 0.841113815 0.146303371 0.179478972 0.509809245 0.122086456 0.048955276 6.35E-09 8.197072374 0.867593457 GALHTVS(ph)HEDIR ddPTM_K562_Paclitaxel_30min_R1 1 GALHTVSHEDIR 12 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2;H0YD72 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 GALHT(0.123)VS(0.877)HEDIR 94.781 0.0099426 33117000 3470.4 3589.1 3304.3 3178.6 3706.1 2561.8 2400.1 2366.1 1715.8 2416.9 TRUE FALSE 3518.996307 3980.970076 2470.088598 2974.738823 4210.933565 3016.099261 2855.506446 2165.085036 1880.610256 1924.334453 1.828682276 2.06875165 1.2836067 1.54585333 2.18825452 1.567346703 1.483893011 1.125108493 0.977278276 1 10.91014385 -8.124965004 1.658106448 0.984591572 1.758591596 0.641770996 0.241066868 0.268098916 1.387309035 0.179978851 0.079017366 7.50E-09 8.124965004 0.774000025 GALHTVS(ph)HEDIRDIR ddPTM_K562_Paclitaxel_30min_R1 1 GALHTVSHEDIRDIR 15 1 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2;H0YD72 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 GALHT(0.031)VS(0.969)HEDIRDIR 75.143 0.02483 0 1702.1 1374.7 1362.2 1209 1309.7 986.02 860.22 1130.6 1247.1 1002.8 TRUE FALSE 1725.934651 1524.794395 1018.295763 1131.460151 1488.103313 1160.876803 1023.442254 1034.548473 1366.889527 798.4288096 2.161663796 1.909743708 1.275374523 1.417108373 1.863789602 1.453951547 1.281820298 1.29573039 1.711974206 1 9.641019968 -5.60930858 4.40682871 1.437405053 2.110240293 0.549001771 0.229510445 0.147904295 5.098083612 0.059053826 0.175552124 2.46E-06 5.60930858 0.672835239 GALSSS(ph)LRDLSDAGVCY ddPTM_K562_Paclitaxel_30min_R1 2 GALSSSLRDLSDAGVCY 17 1 A0A1W2PR28;Q5JU85-3 A0A1W2PR28 IQSEC2 IQ motif and SEC7 domain-containing protein 2 1 GALSS(0.162)S(0.838)LRDLSDAGVCY;GALS(0.001)S(0.062)S(0.937)LRDLSDAGVCY 142.4 3.33E-08 112181000 3475.5 3455.2 3290.8 3671.9 3098.5 3202.1 3537.9 3772.1 3493.6 3893.7 TRUE FALSE 3524.167723 3832.450421 2459.99684 3436.400769 3520.568158 3769.947475 4209.198056 3451.63656 3829.17589 3100.161803 1.136768965 1.236209806 0.793505951 1.108458522 1.135607875 1.216048618 1.357734958 1.113373037 1.235153561 1 11.5981278 -6.890469386 2.832463583 1.200382788 1.05994627 0.134243182 0.135618697 0.479568168 7.774550422 0.045498186 0.052853354 1.29E-07 6.890469386 -0.140436518 GALTLSS(ph)PEVR ddPTM_K562_Paclitaxel_30min_R1 1 GALTLSSPEVR 11 0 G3V1J5;Q9Y2L1-2;Q9Y2L1 G3V1J5 DIS3 Exosome complex exonuclease RRP44 1 GALT(0.001)LS(0.03)S(0.969)PEVR 108.98 0.0056741 19374000 1548.6 1439.5 1898.9 1638.7 1694.9 1510.8 1629.7 1855.2 1554.6 1852.4 TRUE FALSE 1570.285178 1596.669478 1419.49921 1533.601117 1925.774075 1778.719167 1938.927067 1697.58918 1703.926276 1474.879863 1.064686838 1.082575956 0.962450736 1.039814262 1.305715891 1.206009528 1.314633901 1.151001666 1.155298353 1 10.52638173 -6.731788359 21.95409054 1.203481026 1.035257196 0.408583179 0.088159075 48.74495431 36090.4714 0.025342592 0.032706263 1.85E-07 6.731788359 -0.16822383 GAMS(ph)VDSITDLDDNQSR ddPTM_K562_Paclitaxel_30min_R1 1 GAMSVDSITDLDDNQSR 17 0 O43182-4;O43182;H7BYE6;B4DN07;O43182-5;O43182-2;O43182-3 O43182-4 ARHGAP6 Rho GTPase-activating protein 6 1 GAMS(0.975)VDS(0.025)ITDLDDNQSR 208.38 1.53E-17 11533000 886.46 849.58 1024.3 751.82 784.25 733.86 796.28 831.21 672.43 888.4 TRUE FALSE 898.873175 942.3400175 765.7027966 703.6016302 891.0781275 863.9997671 947.3699731 760.5935222 737.019906 707.3435923 1.270773051 1.332223869 1.082504747 0.994709838 1.25975288 1.221471116 1.339334919 1.075281561 1.041954595 1 9.466267365 -8.466922646 8.736755427 1.033201307 1.207601399 0.392577948 0.100966524 0.442433273 66.23310908 0.061010577 0.028981864 3.41E-09 8.466922646 0.174400091 GANPVEIRR ddPTM_K562_Paclitaxel_30min_R1 1 GANPVEIRR 9 1 E7EXB4;E7ESH4;P10809-2;P10809 E7EXB4 HSPD1 "60 kDa heat shock protein, mitochondrial" 0 131.62 0.00099703 5849000 2616.8 3084.7 2957.7 3003 2472 2743.7 2838.8 2819.6 4179.8 3063.2 FALSE TRUE 2653.443274 3421.497978 2210.992055 2810.401021 2808.728251 3230.256672 3377.44748 2580.057381 4581.288466 2438.918159 1.087959128 1.402875273 0.906546227 1.152314608 1.151628742 1.324462922 1.384813783 1.057869602 1.878410085 1 11.25202563 -7.264051613 4.721370902 1.337722161 1.141259519 0.126770373 0.247677304 0.415708313 26.62178066 0.08226538 0.076777757 5.44E-08 7.264051613 -0.196462642 GAPANVS(ph)SSDLTGR ddPTM_K562_Paclitaxel_30min_R1 1 GAPANVSSSDLTGR 14 0 H0Y5S9;H0Y682;P49674 H0Y5S9 CSNK1E Casein kinase I isoform epsilon 1 GAPANVS(0.513)S(0.167)S(0.318)DLT(0.002)GR 94.339 0.011169 7462800 389.27 319.46 504.97 419.46 369.14 504.75 322.58 422.78 297.08 461.5 TRUE FALSE 394.720981 354.3397231 377.4840781 392.557713 419.4231176 594.2603255 383.787871 386.8622001 325.6158614 367.4460467 1.074228406 0.964331298 1.027318382 1.068341098 1.141454974 1.617272334 1.044474079 1.052840828 0.886159653 1 8.52138862 -8.395516662 2.815690579 0.951993218 1.140037792 0.160792555 0.172396898 0.571896063 8.532160148 0.131047728 0.051676987 4.02E-09 8.395516662 0.188044574 GAPPPPGT(ph)PPPS(ph)PMSSAIER ddPTM_K562_Paclitaxel_30min_R1 1 GAPPPPGTPPPSPMSSAIER 20 0 P25791-3 P25791-3 2 GAPPPPGT(1)PPPS(0.964)PMS(0.03)S(0.006)AIER 125.51 2.26E-06 8798500 352.77 257.19 457.68 295.31 327.26 353.1 347.31 393.84 301.48 413.92 TRUE FALSE 357.7098684 285.270874 342.1330235 276.3701384 371.8383526 415.7173272 413.2102594 360.3808337 330.438501 329.5628768 1.085407045 0.865603786 1.038141877 0.838596085 1.128277421 1.261420374 1.253813122 1.093511615 1.002656926 1 8.364409931 -6.858137984 8.59091615 1.142496757 0.956543352 0.360081374 0.10691629 0.266505649 21.15993218 0.033488605 0.038033726 1.39E-07 6.858137984 -0.185953405 GAPPPPGT(ph)PPPSPMSSAIER ddPTM_K562_Paclitaxel_30min_R1 1 GAPPPPGTPPPSPMSSAIER 20 0 P25791-3 P25791-3 1 GAPPPPGT(0.999)PPPSPMSSAIER 100.07 0.0016982 18138000 303.31 439.27 462.74 457.23 594.5 376.53 415.46 437.29 374.16 435.47 TRUE FALSE 307.5572758 487.2309841 345.9155639 427.9053143 675.480965 443.3023088 494.2913662 400.139485 410.0997398 346.720975 0.887045486 1.405253848 0.997677063 1.234148913 1.948197582 1.278556363 1.425617144 1.15406772 1.182794724 1 8.437631305 -4.201841255 15.45314804 1.277322088 1.222146818 0 0.286679107 0 0 0.066065792 0 6.28E-05 4.201841255 -0.055175269 GAPSITSVT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 GAPSITSVTPR 11 0 H7C3L4;E7EQA9;Q92844 H7C3L4 TANK TRAF family member-associated NF-kappa-B activator 1 GAPSITSVT(1)PR 115.29 0.010306 12353000 1897.4 1713.1 1612 1779.9 1787.3 1564.9 1759.8 1538 1580.8 2176.5 TRUE FALSE 1923.969454 1900.142051 1205.030663 1665.745181 2030.760519 1842.413043 2093.712863 1407.3373 1732.642903 1732.928105 1.110241936 1.096492143 0.695372566 0.961231557 1.171866573 1.063179157 1.208193725 0.812115226 0.999835422 1 10.75899609 -4.27253898 16.62615072 1.010112107 47.88540024 0 0.150520881 0 0 0.035784253 0 5.34E-05 4.27253898 46.87528814 GAPSS(ph)PATGVLPS(ph)PQGK ddPTM_K562_Paclitaxel_30min_R1 2 GAPSSPATGVLPSPQGK 17 0 Q5SRE5-2;Q5SRE5 Q5SRE5-2 NUP188 Nucleoporin NUP188 homolog 2 GAPS(0.026)S(0.926)PAT(0.048)GVLPS(1)PQGK;GAPS(0.126)S(0.842)PAT(0.036)GVLPS(0.995)PQGK 192.6 1.89E-10 22987000 5388.3 4217.7 7683.4 5592.1 4393.5 4256.1 3756.5 5884.2 5087.9 6413 TRUE FALSE 5463.752824 4678.202749 5743.630643 5233.447735 4991.969083 5010.859576 4469.276265 5384.300482 5576.615528 5106.02708 1.070059508 0.916211896 1.124872734 1.024954951 0.977662085 0.981361732 0.875294274 1.054499006 1.092163328 1 12.31798547 -4.216259294 15.91151956 1.008502645 1.016114831 0 0.073985685 0 0 0.01701479 0 6.08E-05 4.216259294 0.007612186 GAPSS(ph)PATGVLPSPQGK ddPTM_K562_Paclitaxel_30min_R1 1 GAPSSPATGVLPSPQGK 17 0 Q5SRE5-2;Q5SRE5 Q5SRE5-2 NUP188 Nucleoporin NUP188 homolog 1 GAPSS(0.982)PAT(0.017)GVLPSPQGK 154.81 1.53E-07 44998000 4172.1 3789.9 6303.9 4748.3 4243.8 3894.9 3111.8 4530.5 4242.3 5416.4 TRUE FALSE 4230.522272 4203.694099 4712.402479 4443.765291 4821.877408 4585.605828 3702.247805 4145.605747 4649.79187 4312.534707 0.980982777 0.974761801 1.092722216 1.030430035 1.118107502 1.06332033 0.858485336 0.961292147 1.07820393 1 12.07432035 GAPSSPATGVLPS(ph)PQGK ddPTM_K562_Paclitaxel_30min_R1 1 GAPSSPATGVLPSPQGK 17 0 Q5SRE5-2;Q5SRE5 Q5SRE5-2 NUP188 Nucleoporin NUP188 homolog 1 GAPS(0.017)S(0.205)PAT(0.12)GVLPS(0.657)PQGK 180.31 2.70E-10 49591000 8009.4 7278.8 12668 8368.6 6950.4 7038.5 7223.2 9532.9 8111.9 11251 TRUE FALSE 8121.556311 8073.523999 9469.806724 7831.875452 7897.162151 8286.67915 8593.764492 8723.020643 8891.08424 8958.040024 0.906622017 0.901260095 1.057129316 0.87428449 0.881572546 0.925054937 0.959335353 0.973764419 0.992525621 1 13.1289674 -8.124519771 1.900247516 0.992015003 0.925370568 0.269579543 0.048081518 0.551236058 3.798634051 0.033459205 0.015284966 7.51E-09 8.124519771 -0.066644435 GAPVNIS(ph)SSDLTGR ddPTM_K562_Paclitaxel_30min_R1 2 GAPVNISSSDLTGR 14 0 P48730-2;H7BYT1;P48730;J3KRM8 P48730-2 CSNK1D Casein kinase I isoform delta 1 GAPVNIS(0.929)S(0.066)S(0.005)DLTGR;GAPVNIS(0.913)S(0.08)S(0.007)DLTGR 180.56 2.99E-06 324080000 1558.42 1517 1678.5 1651.01 1689.45 1678.79 1645.78 2088.76 1342.15 1893.14 TRUE FALSE 1580.242688 1682.63119 1254.741916 1545.121608 1919.581693 1976.499835 1958.058163 1911.3068 1471.069504 1507.317029 1.048381102 1.116308751 0.832433981 1.025080709 1.273508927 1.311270156 1.299035389 1.268019112 0.975952289 1 10.55776717 -6.696836144 6.762400857 1.212833989 0.998891545 0.31016794 0.130231115 0.234761711 19.49609629 0.039066418 0.050292377 2.01E-07 6.696836144 -0.213942444 GAPVNISSS(ph)DLTGR ddPTM_K562_Paclitaxel_30min_R1 2 GAPVNISSSDLTGR 14 0 P48730-2;H7BYT1;P48730;J3KRM8 P48730-2 CSNK1D Casein kinase I isoform delta 1 GAPVNIS(0.181)S(0.181)S(0.637)DLTGR;GAPVNIS(0.009)S(0.176)S(0.806)DLT(0.009)GR 115.68 0.0022264 61757000 2245.7 2112.11 2199.83 2323.8 2005.81 1670.85 2358.6 2723.3 2030.95 2688 TRUE FALSE 2277.146729 2342.717312 1644.455709 2174.761869 2279.035281 1967.151788 2806.132037 2491.938667 2226.031822 2140.184125 1.063995711 1.094633534 0.768371137 1.016156434 1.064878136 0.919150724 1.311163841 1.16435714 1.040112295 1 11.0635192 -7.734742476 24.99939849 1.14260498 0.987527101 0.256028496 0.116855902 286.9791451 268731.5413 0.045088623 0.034915629 1.84E-08 7.734742476 -0.155077879 GAPVNISSSDLTGRQDT(ph)SR ddPTM_K562_Paclitaxel_30min_R1 1 GAPVNISSSDLTGRQDTSR 19 1 P48730-2;H7BYT1;P48730;J3KRM8 P48730-2 CSNK1D Casein kinase I isoform delta 1 GAPVNIS(0.057)S(0.01)S(0.01)DLT(0.043)GRQDT(0.44)S(0.44)R 142.4 4.21E-12 10373000 1287.8 1241 1393.1 1420 1193.9 1180.3 1219.1 1134 1738.7 1469 TRUE FALSE 1305.833173 1376.496577 1041.394675 1328.927556 1356.529393 1389.609633 1450.417861 1037.659622 1905.709904 1169.616994 1.11646221 1.176878059 0.890372388 1.136207462 1.159806501 1.188089469 1.240079333 0.887178989 1.629345259 1 10.19182046 -6.512435807 22.96953072 1.178402808 1.062883014 0.075081376 0.192316701 485.9464245 1068852.82 0.052415237 0.072381941 3.07E-07 6.512435807 -0.115519794 GAQASS(ph)GSPALPR ddPTM_K562_Paclitaxel_30min_R1 2 GAQASSGSPALPR 13 0 P42684-4;P42684-7;P42684-10;P42684-5;P42684-2;P42684-6;P42684-3;P42684 P42684-4 ABL2 Abelson tyrosine-protein kinase 2 1 GAQAS(0.199)S(0.699)GS(0.102)PALPR;GAQAS(0.117)S(0.516)GS(0.367)PALPR 113.52 0.003763 152726000 3788.3 3799.6 3713.5 3602.3 3225.8 3207.9 3603.7 3281.4 3249.7 3386.8 TRUE FALSE 3841.347888 4214.453177 2775.980997 3371.264601 3665.208573 3776.776024 4287.483262 3002.624588 3561.848205 2696.568301 1.42453202 1.562895023 1.02944954 1.25020553 1.359212215 1.400586079 1.589977625 1.113498437 1.320881879 1 11.39690886 -9.244901009 1.167843789 1.004367105 1.353591874 0.28261143 0.165751466 1.214230381 3.12581664 0.163641377 0.050844214 5.69E-10 9.244901009 0.349224769 GARS(ph)FSPPR ddPTM_K562_Paclitaxel_30min_R1 1 GARSFSPPR 9 1 H3BNL5;H3BUT3;B4DQ77;H3BSV1;B4E021;P20701-3;P20701;P20701-2 H3BNL5 ITGAL Integrin alpha-L 1 GARS(0.987)FS(0.013)PPR 76.1 0.028096 4662300 1771.8 1498.6 1924 1649.2 1191.5 1494.6 1422.7 1628.3 1100 1709.8 TRUE FALSE 1796.610666 1662.222216 1438.262404 1543.427694 1353.802472 1759.646325 1692.649898 1489.965751 1205.659915 1361.341821 1.31973516 1.221017521 1.056503504 1.133754704 0.994461825 1.292582287 1.243368764 1.094483199 0.88564084 1 10.41081365 -2.000000006 0.103949407 0.91197069 1.881506954 0.300573923 0.113716569 187.8949231 1.379034108 1.389122838 26.02983387 0.01 2.000000006 0.969536264 GAS(ph)PNVSNVKVETPLHMAAR ddPTM_K562_Paclitaxel_30min_R1 1 GASPNVSNVKVETPLHMAAR 20 1 P16157-14;P16157-10;P16157-12;P16157-21;P16157;P16157-3;P16157-16;P16157-5;P16157-8;P16157-13;P16157-4;P16157-7;P16157-6;P16157-9;P16157-11;P16157-15;P16157-2 P16157-14 ANK1 Ankyrin-1 1 GAS(0.999)PNVS(0.001)NVKVETPLHMAAR 73.735 0.0044624 14941000 1626.2 1474.7 2091.9 1461 1398.9 1487.9 1104.9 1898.3 1924.7 2284.9 TRUE FALSE 1648.971817 1635.712733 1563.773973 1367.297999 1589.453864 1751.758174 1314.549007 1737.027566 2109.576035 1819.236126 0.906408901 0.899120631 0.859577243 0.751578083 0.873692997 0.962908635 0.72258295 0.954811496 1.159594406 1 10.82911709 -8.534331621 7.750804179 1.073749246 0.855355246 0.586359623 0.075937837 0.099119024 37.04592531 0.048409976 0.019043242 2.92E-09 8.534331621 -0.218394 GAS(ph)QVSGGPRDTPSRPRTLATPR ddPTM_K562_Paclitaxel_30min_R1 1 GASQVSGGPRDTPSRPRTLATPR 23 3 K7EQ72 K7EQ72 CNN1 1 GAS(0.5)QVS(0.5)GGPRDTPSRPRTLATPR 60.86 0.016187 47240000 1752.6 2077.3 1958.9 1991.2 1721.3 1456.2 1975.9 2309.8 1407.7 2562.2 TRUE FALSE 1777.141807 2304.106639 1464.351468 1863.493344 1955.770202 1714.436624 2350.81671 2113.568073 1542.915875 2040.022234 0.87113845 1.129451729 0.717811524 0.913467174 0.958700435 0.84040095 1.152348573 1.036051489 0.756323068 1 10.99436916 GASAATGIPLES(ph)DEDSNDNDNDIENENCMHTN ddPTM_K562_Paclitaxel_30min_R1 2 GASAATGIPLESDEDSNDNDNDIENENCMHTN 32 0 Q9Y4E8;Q9Y4E8-2;Q9Y4E8-3 Q9Y4E8 USP15 Ubiquitin carboxyl-terminal hydrolase 15 1 GASAAT(0.008)GIPLES(0.756)DEDS(0.235)NDNDNDIENENCMHTN;GAS(0.002)AAT(0.02)GIPLES(0.769)DEDS(0.209)NDNDNDIENENCMHTN 116.65 3.29E-17 99869000 9769 9950.6 11504.6 11320.7 10652.2 9891.5 9769.3 11621.7 11386.1 12275.6 TRUE FALSE 9905.79614 11037.04016 8600.121443 10594.64097 12103.20998 11645.61864 11622.97368 10634.36404 12479.78578 9773.825982 1.013502405 1.129244595 0.879913502 1.083980929 1.238328778 1.191510741 1.189193843 1.088045159 1.276857784 1 13.2547077 -6.527702493 17.99079561 1.17013145 1.013426675 0.370504698 0.091533747 4.095420912 15270.39317 0.025533775 0.033296214 2.97E-07 6.527702493 -0.156704775 GASAATGIPLESDEDS(ph)NDNDNDIENENCMHTN ddPTM_K562_Paclitaxel_30min_R1 1 GASAATGIPLESDEDSNDNDNDIENENCMHTN 32 0 Q9Y4E8;Q9Y4E8-2;Q9Y4E8-3 Q9Y4E8 USP15 Ubiquitin carboxyl-terminal hydrolase 15 1 GASAATGIPLES(0.445)DEDS(0.555)NDNDNDIENENCMHTN 148.19 4.23E-38 54008000 4327.6 4504.2 5187.3 5056.4 4242 3994.5 4435.7 4625.8 4747.8 4663.7 TRUE FALSE 4388.199752 4995.983788 3877.701959 4732.105136 4819.832218 4702.868489 5277.350919 4232.809417 5203.847404 3713.23538 1.181772579 1.345453029 1.044291989 1.27438868 1.298014191 1.266515049 1.421227145 1.139924886 1.40143214 1 11.85846105 -4.962050197 16.03954013 1.25133346 0.89925026 0.015554149 0.134773749 120202513.3 1419533676 0.031275021 1219182184 1.09E-05 4.962050197 -0.3520832 GASDVGAGEPGPERAPLS(ph)PGR ddPTM_K562_Paclitaxel_30min_R1 3 GASDVGAGEPGPERAPLSPGR 21 1 A0A1B0GW05 A0A1B0GW05 1 GASDVGAGEPGPERAPLS(1)PGR;GASDVGAGEPGPERAPLS(1)PGR;GASDVGAGEPGPERAPLS(1)PGR 76.068 0.010181 27953400 4447.1 4456.1 5757.7 4984.3 4709.3 4334.7 4056.03 4820.5 5822.6 5518.7 TRUE FALSE 4509.37312 4942.632068 4304.097425 4664.629307 5350.786389 5103.398183 4825.640519 4410.968436 6381.886746 4393.985911 1.026260259 1.124862976 0.979542837 1.061594052 1.217752286 1.161450739 1.098237595 1.003864948 1.452414021 1 12.10131453 -6.634656052 7.608876017 1.152996645 1.04670586 0.153744707 0.123945897 0.459491771 28.98440866 0.035284435 0.045583736 2.32E-07 6.634656052 -0.106290785 GASS(ph)PYGAPGT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 GASSPYGAPGTPR 13 0 Q5UIP0-2;Q5UIP0;H7BZN3 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 2 GAS(0.25)S(0.75)PY(0.001)GAPGT(0.999)PR;GAS(0.074)S(0.925)PYGAPGT(1)PR 133.04 2.94E-15 35429000 5539.9 4919.6 5449.6 5630.5 4739.2 5159.1 4858 5492.3 4518.6 6018.6 TRUE FALSE 5617.475692 5456.738565 4073.78108 5269.384931 5384.759275 6073.993948 5779.78014 5025.694833 4952.63172 4792.006016 1.172259733 1.138716969 0.850120193 1.099619849 1.123696268 1.267526361 1.206129567 1.048766386 1.033519512 1 12.226414 -4.09435782 13.36338339 1.098767781 47.74467023 0 0.112233393 0 0 0.027325827 0 8.05E-05 4.09435782 46.64590245 GASS(ph)PYGAPGTPR ddPTM_K562_Paclitaxel_30min_R1 1 GASSPYGAPGTPR 13 0 Q5UIP0-2;Q5UIP0;H7BZN3 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 GAS(0.033)S(0.967)PYGAPGTPR 176.99 0.00017039 32298000 2438.3 2291.4 2877.1 2527.6 2404.1 2334 2316.3 2533.4 1899.4 2810.1 TRUE FALSE 2472.443723 2541.582801 2150.740521 2365.491049 2731.579122 2747.902129 2755.805833 2318.171857 2081.845857 2237.400078 1.105052131 1.135953657 0.961267742 1.057249918 1.220872006 1.228167531 1.23170007 1.036100732 0.930475456 1 11.12760754 -8.502233519 7.564650029 0.970496711 1.132013232 0.42299105 0.080650542 0.191424713 55.3272873 0.054005067 0.023922832 3.15E-09 8.502233519 0.161516521 GATQQILDEAER ddPTM_K562_Paclitaxel_30min_R1 2 GATQQILDEAER 12 0 F8VQ14;F5GWF6;P78371-2;P78371 F8VQ14 CCT2 T-complex protein 1 subunit beta 0 ; 180.24 0.00083739 27432000 1932.76 1891.26 1766.34 1841.44 1679.99 2079.5 2147.8 2008.65 1829.86 2355.6 FALSE TRUE 1959.824603 2097.754163 1320.405621 1723.33828 1908.83308 2448.270127 2555.333838 1838.002645 2005.626229 1875.527427 1.044945851 1.118487596 0.704018295 0.918855281 1.01775802 1.305376873 1.362461461 0.979992411 1.069366515 1 10.87308065 -7.032004684 8.463341895 1.15674521 0.944664144 0.276239582 0.15056876 0.418212867 102.9674465 0.052618096 0.05367583 9.29E-08 7.032004684 -0.212081066 GAVAAEGAS(ph)DTEREEPTESQGLAAR ddPTM_K562_Paclitaxel_30min_R1 1 GAVAAEGASDTEREEPTESQGLAAR 25 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 GAVAAEGAS(0.692)DT(0.308)EREEPTESQGLAAR 94.403 5.00E-05 475650000 753.98 665.05 760.73 682.18 849.94 740.2 675.73 827.09 795.9 1010.3 TRUE FALSE 764.5380462 737.6624081 568.6743029 638.4280281 965.7162176 871.4640771 803.94624 756.823542 872.3497512 804.4003054 0.950444749 0.917033973 0.70695436 0.79366955 1.200541834 1.083371141 0.999435523 0.940854369 1.084472178 1 9.651769819 -6.741433167 24.99998123 1.047484336 0.83773539 0.567611175 0.089472447 195.7581508 244620.5059 0.028518503 0.036768642 1.81E-07 6.741433167 -0.209748947 GAVAAEGASDT(ph)EREEPTESQGLAAR ddPTM_K562_Paclitaxel_30min_R1 1 GAVAAEGASDTEREEPTESQGLAAR 25 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 GAVAAEGAS(0.174)DT(0.826)EREEPTESQGLAAR 101.48 7.90E-05 494220000 492.72 546.75 708.67 660.1 571.24 557.98 638.44 636.34 498.08 772.4 TRUE FALSE 499.6196002 606.446014 529.7574938 617.7641405 649.0525592 656.9299186 759.5806571 582.2789451 545.9228095 614.984456 0.812410127 0.986116004 0.861416071 1.004519926 1.05539669 1.068205728 1.235121717 0.946818963 0.887701801 1 9.264406136 -6.404154935 4.240181976 1.04082059 0.897158191 0.318831618 0.094472652 0.297620447 8.868490801 0.028723749 0.043391915 3.94E-07 6.404154935 -0.143662399 GAVY(ph)QAPSPPPAPVGLGSMAVFR ddPTM_K562_Paclitaxel_30min_R1 1 GAVYQAPSPPPAPVGLGSMAVFR 23 0 K7EPT0;K7ESK6;Q13057-2 K7EPT0 COASY 1 GAVY(0.989)QAPS(0.011)PPPAPVGLGSMAVFR 145.49 2.01E-17 19656000 1441.8 1643.5 1429.3 1678.3 1517.8 1730.3 2397.4 2613.7 1716.5 2523.9 TRUE FALSE 1461.989648 1822.942888 1068.455538 1570.66135 1724.550057 2037.14441 2852.294135 2391.649871 1881.377495 2009.527795 0.727528951 0.907149875 0.531694829 0.781607179 0.858186715 1.013742838 1.419385262 1.190155158 0.93622865 1 10.97264082 -7.237628925 2.41263558 1.155383221 0.741033431 0.58785077 0.150016676 0.206823937 2.372129177 0.058189109 0.054637749 5.79E-08 7.237628925 -0.41434979 GAVYQAPS(ph)PPPAPVGLGSMAVFR ddPTM_K562_Paclitaxel_30min_R1 1 GAVYQAPSPPPAPVGLGSMAVFR 23 0 K7EPT0;K7ESK6;Q13057-2 K7EPT0 COASY 1 GAVY(0.066)QAPS(0.934)PPPAPVGLGSMAVFR 205 5.45E-31 18030000 6507.6 7704.9 6683.5 6485.7 5747.1 6038.3 8456.8 8908.1 7924.5 9632.2 TRUE FALSE 6598.726478 8546.147038 4996.167765 6069.736231 6529.952319 7109.107723 10061.43365 8151.301302 8685.683633 7669.152353 0.860424487 1.114353535 0.651462839 0.791448123 0.851456852 0.926974377 1.311935556 1.06286861 1.132548062 1 12.90485141 -7.581370484 7.896272399 1.131716898 0.857025118 0.500135038 0.129396642 0.212534156 25.03704776 0.050200227 0.038842098 2.62E-08 7.581370484 -0.27469178 GCALQCAILS(ph)PAFK ddPTM_K562_Paclitaxel_30min_R1 1 GCALQCAILSPAFK 14 0 A0A0A0MSM0;Q92598-2;Q92598-3;Q92598;Q92598-4;A0A087WTS8;D6RJ96;A0A087WYC1;E9PDE8;O95757;P34932 A0A0A0MSM0 HSPH1;HSPA4;HSPA4L Heat shock protein 105 kDa;Heat shock 70 kDa protein 4L;Heat shock 70 kDa protein 4 1 GCALQCAILS(1)PAFK 135.14 3.43E-05 8363200 2483 2275.5 3505.1 2632.5 2053.1 1957.9 2091.1 2824.8 2567.2 3223.2 TRUE FALSE 2517.769661 2523.946785 2620.194154 2463.663233 2332.766979 2305.106075 2487.875309 2584.815608 2813.791031 2566.310071 0.981085524 0.98349253 1.020996716 0.960002168 0.908996542 0.898218068 0.969436756 1.007210951 1.096434551 1 11.32547978 -8.429412269 3.397978484 1.049288006 0.959263704 0.436293026 0.040128271 0.244906907 5.248919713 0.029108345 0.011828735 3.72E-09 8.429412269 -0.090024301 GCEIS(ph)PALFEAPRGYS(ph)MMGGQREAAT(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 GCEISPALFEAPRGYSMMGGQREAATR 27 2 K7EKP0;Q86YJ7-2;Q86YJ7 K7EKP0 ANKRD13B Ankyrin repeat domain-containing protein 13B 3 GCEIS(1)PALFEAPRGY(0.472)S(0.534)MMGGQREAAT(0.994)R;GCEIS(0.995)PALFEAPRGY(0.09)S(0.916)MMGGQREAAT(0.999)R 46.273 0.012015 30992000 63.941 0 0 0 0 0 108.94 0 0 0 TRUE FALSE 64.83637127 0 0 0 0 0 129.6107963 0 0 0 0 GCES(ph)PDPDSSYALT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 GCESPDPDSSYALTPR 16 0 Q06413-5;Q06413-6;A0A0D9SGI5;A0A0D9SFD0;D6RC63;D6R942;A0A0D9SET2;D6RB91 Q06413-5 MEF2C Myocyte-specific enhancer factor 2C 2 GCES(1)PDPDSSYALT(1)PR;GCES(1)PDPDSSYALT(1)PR 298.16 9.36E-177 45811000 5756.1 5011.4 7038 6244.1 5152.6 5373.8 5065.5 6312 4932.9 6632.3 TRUE FALSE 5836.703159 5558.561599 5261.169855 5843.631374 5854.471354 6326.767978 6026.652181 5775.756202 5406.727086 5280.633619 1.105303564 1.052631559 0.996314123 1.106615568 1.108668349 1.198107734 1.141274441 1.093761965 1.023878473 1 12.36649533 -4.921849219 15.05135884 1.087247989 1.376219139 0.003086209 0.060975634 7177667.262 25752296.22 0.016298078 66137182.82 1.20E-05 4.921849219 0.288971151 GCES(ph)PDPDSSYALTPR ddPTM_K562_Paclitaxel_30min_R1 1 GCESPDPDSSYALTPR 16 0 Q06413-5;Q06413-6;A0A0D9SGI5;A0A0D9SFD0;D6RC63;D6R942;A0A0D9SET2;D6RB91 Q06413-5 MEF2C Myocyte-specific enhancer factor 2C 1 GCES(0.892)PDPDS(0.054)S(0.054)YALTPR 144.4 3.28E-08 17343000 629.83 671.22 1169.3 992.1 964.21 740.09 433.54 715.55 697.8 687.79 TRUE FALSE 638.6495632 744.5060695 874.0957533 928.4711465 1095.551726 871.3345701 515.8019518 654.7595612 764.8268079 547.6180205 1.166231825 1.359535373 1.596177848 1.69547223 2.00057647 1.591135678 0.941900983 1.195650137 1.396642877 1 9.097026112 -7.743903805 24.90414868 1.149852709 1.585416041 0.454817778 0.232391738 233.8157338 332066.8319 0.097780068 0.075562219 1.80E-08 7.743903805 0.435563331 GCS(ph)PPAPAGSPR ddPTM_K562_Paclitaxel_30min_R1 2 GCSPPAPAGSPR 12 0 Q9C073;D6RFX7 Q9C073 FAM117A Protein FAM117A 1 GCS(0.998)PPAPAGS(0.002)PR;GCS(1)PPAPAGSPR 136.27 0.00029795 34742000 7424.8 6721.2 8563.5 8249.4 7343 7270.7 6200.7 7609.1 6682.3 8004.2 TRUE FALSE 7528.770107 7455.043346 6401.538513 7720.320407 8343.240918 8560.056559 7377.250455 6962.65946 7324.164772 6372.939646 1.181365355 1.169796634 1.004487547 1.211422175 1.309166787 1.343188079 1.157589882 1.092534976 1.149260024 1 12.63774328 -9.003753854 1.135965839 1.007016903 1.195108726 0.291314884 0.089657027 0.760783392 2.208845937 0.095810784 0.03065083 9.91E-10 9.003753854 0.188091824 GCWEVS(ph)PTER ddPTM_K562_Paclitaxel_30min_R1 1 GCWEVSPTER 10 0 Q8IZT6-2;Q8IZT6 Q8IZT6-2 ASPM Abnormal spindle-like microcephaly-associated protein 1 GCWEVS(0.806)PT(0.194)ER 96.229 0.01243 43754000 619.38 781.61 746.96 710.01 677.42 774.52 692.12 924.84 752.14 968.53 TRUE FALSE 628.053231 866.948823 558.3807097 664.4731365 769.6960728 911.8702472 823.4461569 846.2690693 824.3864077 771.1430544 0.814444515 1.124238646 0.724094844 0.861672984 0.998123589 1.182491682 1.067825421 1.097421632 1.069044716 1 9.590854708 -6.965122414 4.536640749 1.089231489 0.889076988 0.457960173 0.103314717 0.185353643 8.882292756 0.032762205 0.036499039 1.08E-07 6.965122414 -0.200154501 GDAAS(ph)SPAPAASVGSSQGGAR ddPTM_K562_Paclitaxel_30min_R1 1 GDAASSPAPAASVGSSQGGAR 21 0 F8WCC1;E7EXA6;A0A0D9SF58;Q8WVB6;Q8WVB6-2 F8WCC1 CHTF18 Chromosome transmission fidelity protein 18 homolog 1 GDAAS(0.993)S(0.007)PAPAASVGSSQGGAR 345.82 0 68516000 4233 4178.9 5168.3 5029.1 4717.1 4291.4 4419.1 5011.8 3235.8 4541.6 TRUE FALSE 4292.27506 4635.166434 3863.498744 4706.556035 5359.648881 5052.419536 5257.601156 4586.016307 3546.613048 3616.019427 1.187016593 1.281842238 1.068439709 1.301584831 1.48219582 1.397232409 1.453974809 1.268249908 0.980805861 1 11.82018671 -8.727559193 5.045345784 0.985733906 1.312399385 0.544652767 0.115404374 0.147219398 8.906669865 0.101202939 0.033070709 1.87E-09 8.727559193 0.326665479 GDAASS(ph)PAPAAS(ph)VGSSQGGAR ddPTM_K562_Paclitaxel_30min_R1 1 GDAASSPAPAASVGSSQGGAR 21 0 F8WCC1;E7EXA6;A0A0D9SF58;Q8WVB6;Q8WVB6-2 F8WCC1 CHTF18 Chromosome transmission fidelity protein 18 homolog 2 GDAAS(0.106)S(0.894)PAPAAS(0.605)VGS(0.348)S(0.048)QGGAR 82.586 0.010925 8815100 1237.6 1183.6 1292.6 1171.9 1027.8 1271.6 1080.4 1604.5 1303.9 1869.7 TRUE FALSE 1254.930218 1312.829451 966.2671433 1096.739579 1167.803761 1497.100406 1285.40026 1468.18771 1429.145421 1488.654114 0.842996507 0.881890184 0.649087746 0.736732307 0.784469508 1.005673777 0.863464688 0.98625174 0.960025172 1 10.53979287 -7.248368634 22.4913604 0.955997651 0.775179883 0.640505457 0.068809687 142.8783207 245855.9487 0.023963671 0.023778572 5.64E-08 7.248368634 -0.180817768 GDAASS(ph)PAPAASVGS(ph)SQGGAR ddPTM_K562_Paclitaxel_30min_R1 1 GDAASSPAPAASVGSSQGGAR 21 0 F8WCC1;E7EXA6;A0A0D9SF58;Q8WVB6;Q8WVB6-2 F8WCC1 CHTF18 Chromosome transmission fidelity protein 18 homolog 2 GDAAS(0.098)S(0.902)PAPAAS(0.052)VGS(0.785)S(0.163)QGGAR 167.35 1.97E-17 6103600 2014.1 1545 1833.4 1909.7 1390.7 1427.6 1505.9 1998.7 1655.4 2242.6 TRUE FALSE 2042.303614 1713.688325 1370.535495 1787.22039 1580.136885 1680.764816 1791.636664 1828.89796 1814.408567 1785.556889 1.14379084 0.959750056 0.767567532 1.000931642 0.884954657 0.941311266 1.003404974 1.024273139 1.016158364 1 10.80215838 -7.800359769 4.7591587 1.014472919 0.941068246 0.098615404 0.088664277 0.448971464 23.02446261 0.038601635 0.026402191 1.58E-08 7.800359769 -0.073404672 GDAASS(ph)PAPAASVGSSQGGAR ddPTM_K562_Paclitaxel_30min_R1 3 GDAASSPAPAASVGSSQGGAR 21 0 F8WCC1;E7EXA6;A0A0D9SF58;Q8WVB6;Q8WVB6-2 F8WCC1 CHTF18 Chromosome transmission fidelity protein 18 homolog 1 GDAAS(0.23)S(0.769)PAPAASVGSSQGGAR;GDAAS(0.088)S(0.912)PAPAASVGSSQGGAR;GDAAS(0.021)S(0.979)PAPAASVGSSQGGAR 387.56 0 95726000 8140.9 8843.5 10041.4 9701.9 8123.8 8287.7 7585 9172.8 5487.76 9374.9 TRUE FALSE 8254.897717 9809.063237 7506.32438 9079.663558 9230.399097 9757.40723 9024.214154 8393.513385 6014.883868 7464.290234 1.105918642 1.314132078 1.005631365 1.21641352 1.236607743 1.30721166 1.208984896 1.124489151 0.805821274 1 12.86578937 -8.614146331 5.096657014 0.907338964 1.200321695 0.595475702 0.096118481 0.136763091 5.791156229 0.06800577 0.024189527 2.43E-09 8.614146331 0.29298273 GDAASSPAPAASVGS(ph)SQGGAR ddPTM_K562_Paclitaxel_30min_R1 1 GDAASSPAPAASVGSSQGGAR 21 0 F8WCC1;E7EXA6;A0A0D9SF58;Q8WVB6;Q8WVB6-2 F8WCC1 CHTF18 Chromosome transmission fidelity protein 18 homolog 1 GDAASS(0.006)PAPAAS(0.04)VGS(0.679)S(0.276)QGGAR 102.79 0.00036107 5136100 592.62 538.92 698.01 630.76 597.45 749.86 589.98 732.61 607.14 566.72 TRUE FALSE 600.9185084 597.7611081 521.7887426 590.3058768 678.8328049 882.8371424 701.9256251 670.3702077 665.4585098 451.2221529 1.331757549 1.324760108 1.156389905 1.3082378 1.504431466 1.956546541 1.555609849 1.48567663 1.474791309 1 8.817694089 -6.764769823 4.646386674 1.548781779 1.271308789 0.163573739 0.223070726 0.275301872 14.96919416 0.068113468 0.083015546 1.72E-07 6.764769823 -0.27747299 GDEASEEGQNGSS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 GDEASEEGQNGSSPK 15 0 E7EV99;E7ENY0;P35611-5;P35611-2;P35611-6;P35611-4;P35611;P35611-3;H0Y9H2 E7EV99 ADD1 Alpha-adducin 1 GDEASEEGQNGS(0.116)S(0.884)PK 116.87 0.0011645 4484800 1865.5 1482.2 2849.8 2128.4 1493.4 1337.9 1375.8 2082.6 1138.8 2521.8 TRUE FALSE 1891.622756 1644.031608 2130.332744 1991.89395 1696.826363 1575.15778 1636.850868 1905.670131 1248.186828 2007.855776 0.942110872 0.818799651 1.060998887 0.992050313 0.845093748 0.784497472 0.815223328 0.949107079 0.621651636 1 10.97143993 -6.843300791 6.426967005 0.82854048 0.951220903 0.215126464 0.109686242 0.324646868 20.46699672 0.033130171 0.037827894 1.43E-07 6.843300791 0.122680423 GDGSELLAGPGGPPAERTEDEEFLIQHLLQAPS(ph)PPR ddPTM_K562_Paclitaxel_30min_R1 1 GDGSELLAGPGGPPAERTEDEEFLIQHLLQAPSPPR 36 1 Q9ULL5;Q9ULL5-2 Q9ULL5 PRR12 Proline-rich protein 12 1 GDGSELLAGPGGPPAERTEDEEFLIQHLLQAPS(1)PPR 68.15 5.90E-06 11800000 401.83 441.96 819.94 657.71 535.93 457.42 536.6 831.4 572.91 955.09 TRUE FALSE 407.4568598 490.2146874 612.9360061 615.5274244 608.9327394 538.5370145 638.4170488 760.7673806 627.9405653 760.4421337 0.535815734 0.644644301 0.806025835 0.809433614 0.800761442 0.708189342 0.83953403 1.000427708 0.825757198 1 9.570694659 -4.118997835 0.218650251 0.985466702 2.26E-17 0.712889645 0.072839921 12.52988151 0.351794981 0.134129412 3.620390058 7.60E-05 4.118997835 -0.985466702 GDHRS(ph)PAS(ph)AQKFSSRSTVPTPAK ddPTM_K562_Paclitaxel_30min_R1 1 GDHRSPASAQKFSSRSTVPTPAK 23 3 Q7Z628;Q7Z628-2 Q7Z628 NET1 Neuroepithelial cell-transforming gene 1 protein 2 GDHRS(1)PAS(1)AQKFSSRSTVPTPAK 55.763 0.010134 8888200 1227.1 1207.4 1619.9 1293.4 931.38 1179.2 1059.7 1325.1 1534.1 1814.7 TRUE FALSE 1244.283186 1339.228015 1210.93621 1210.447113 1058.249724 1388.314563 1260.772543 1212.524484 1681.45716 1444.863144 0.861177193 0.92688918 0.838097515 0.837759007 0.732422118 0.960862327 0.872589593 0.83919677 1.163748391 1 10.49671713 -8.751518332 24.9870445 1.081874203 0.859186671 0.634754408 0.067738263 107.9137933 271795.2654 0.046297524 0.017033348 1.77E-09 8.751518332 -0.222687532 GDMS(ph)DEDDENEFFDAPEIITMPENLGHKR ddPTM_K562_Paclitaxel_30min_R1 2 GDMSDEDDENEFFDAPEIITMPENLGHKR 29 1 P22059 P22059 OSBP Oxysterol-binding protein 1 1 GDMS(1)DEDDENEFFDAPEIITMPENLGHKR;GDMS(1)DEDDENEFFDAPEIITMPENLGHKR 135.52 3.01E-19 42814100 1125.28 1071.62 1849.93 1125.6 1157.07 1036.09 841.96 1300.11 1202.78 1533.23 TRUE FALSE 1141.037392 1188.623096 1382.892292 1053.409054 1314.682523 1219.826014 1001.717515 1189.65754 1318.312393 1220.756884 0.934696668 0.973677159 1.132815477 0.862914695 1.076940495 0.999237465 0.82057085 0.974524539 1.079913953 1 10.2535602 GDMSAVNDES(ph)F ddPTM_K562_Paclitaxel_30min_R1 1 GDMSAVNDESF 11 0 Q8N488 Q8N488 RYBP RING1 and YY1-binding protein 1 GDMSAVNDES(1)F 112.5 1.02E-05 0 1700.5 1730.6 1822.5 1716.7 1862.2 1823.2 1926.9 1802.3 1543.4 1888.4 TRUE FALSE 1724.312246 1919.552761 1362.387335 1606.598546 2115.863167 2146.518921 2292.519216 1649.183365 1691.650466 1503.543043 1.146832646 1.27668627 0.906117946 1.068541771 1.407251476 1.427640486 1.524744653 1.096864751 1.125109436 1 10.55415045 -5.202595465 19.17864984 1.216563413 1.146825264 0.003819352 0.191672641 21420.43638 6977134.426 0.051816589 38.12893134 6.27E-06 5.202595465 -0.069738149 GDNS(ph)SMDDLHKK ddPTM_K562_Paclitaxel_30min_R1 1 GDNSSMDDLHKK 12 1 O75473-3;O75473-2;O75473 O75473-3 LGR5 Leucine-rich repeat-containing G-protein coupled receptor 5 1 GDNS(0.5)S(0.5)MDDLHKK 76.843 0.024095 4832900 2423.7 2271.9 2739 2330.2 2194.8 1699.6 1947.2 2485.5 2177.3 3011.5 TRUE FALSE 2457.639278 2519.953725 2047.505574 2180.751402 2493.768918 2001.000196 2316.671035 2274.341261 2386.439393 2397.754647 1.024975295 1.050963963 0.853926225 0.90949731 1.04004341 0.834530839 0.966183524 0.948529602 0.995280896 1 11.22746833 -8.777862155 7.359793708 0.998247428 0.951341825 0.059652034 0.069526048 0.514264917 129.0387389 0.061639344 0.017756069 1.67E-09 8.777862155 -0.046905603 GDPEWS(ph)SETDALVGSR ddPTM_K562_Paclitaxel_30min_R1 1 GDPEWSSETDALVGSR 16 0 Q7Z7N9 Q7Z7N9 TMEM179B Transmembrane protein 179B 1 GDPEWS(0.905)S(0.075)ET(0.02)DALVGSR 79.317 0.024052 10410000 826.85 718.94 798.4 617.55 834.66 812.78 653.16 630.21 824.21 900.74 TRUE FALSE 838.4284511 797.4363005 596.8340455 577.9431071 948.3548229 956.915121 777.0937003 576.6697269 903.3790532 717.1686936 1.16908122 1.11192291 0.832208727 0.80586773 1.322359483 1.334295724 1.083557756 0.804092164 1.259646526 1 9.486168702 -5.528105284 24.98757991 1.054012975 1.154791746 0.034048151 0.192375026 518.7044282 2479889.959 0.05266739 0.140405786 2.96E-06 5.528105284 0.100778772 GDPEWSS(ph)ETDALVGSR ddPTM_K562_Paclitaxel_30min_R1 2 GDPEWSSETDALVGSR 16 0 Q7Z7N9 Q7Z7N9 TMEM179B Transmembrane protein 179B 1 GDPEWS(0.292)S(0.621)ET(0.087)DALVGSR;GDPEWS(0.179)S(0.586)ET(0.235)DALVGSR 167.18 1.01E-07 46650000 3227 2936.17 3047.1 2894.1 2934.65 3135.5 3122.3 3441.8 3022.6 3609.3 TRUE FALSE 3272.187956 3256.75097 2277.821919 2708.48538 3334.399014 3691.5369 3714.740126 3149.397607 3312.934235 2873.722679 1.138658222 1.133286449 0.792638043 0.942500611 1.160306469 1.284583557 1.292657831 1.095929552 1.15283714 1 11.48870513 -6.827862974 6.716688722 1.183007417 0.996567415 0.293532236 0.121659873 0.259184581 20.78375686 0.040142852 0.045874614 1.49E-07 6.827862974 -0.186440002 GDPEWSSET(ph)DALVGSR ddPTM_K562_Paclitaxel_30min_R1 1 GDPEWSSETDALVGSR 16 0 Q7Z7N9 Q7Z7N9 TMEM179B Transmembrane protein 179B 1 GDPEWS(0.003)S(0.267)ET(0.73)DALVGSR 198.38 1.30E-12 16475000 663.03 832.7 1039.9 926.01 751.73 876.48 1009.3 918.8 792.38 898.3 TRUE FALSE 672.3144656 923.617002 777.3643837 866.6198633 854.1283529 1031.911422 1200.809406 840.742205 868.4916394 715.2259669 0.940002876 1.291363911 1.086879419 1.211672819 1.194207694 1.442776786 1.678923112 1.175491724 1.21428986 1 9.482255306 -7.072008664 5.071047336 1.336723515 1.1467609 0.140693672 0.188266079 0.393851469 18.84944749 0.063300932 0.064302918 8.47E-08 7.072008664 -0.189962615 GDPQQQSITHIAIPQEAYNAVHVSGS(ph)PTALAAVK ddPTM_K562_Paclitaxel_30min_R1 1 GDPQQQSITHIAIPQEAYNAVHVSGSPTALAAVK 34 0 Q2TAL8 Q2TAL8 QRICH1 Glutamine-rich protein 1 1 GDPQQQSITHIAIPQEAYNAVHVS(0.38)GS(0.446)PT(0.174)ALAAVK 99.928 1.74E-12 59129000 1575.7 1422.1 2264.7 1592 1375 1229.4 1540.9 2324.6 1239.8 2536 TRUE FALSE 1597.764661 1577.369687 1692.948476 1489.896246 1562.298279 1447.416828 1833.277731 2127.11072 1358.88833 2019.161808 0.791300952 0.781200239 0.838441213 0.737878579 0.773736049 0.716840435 0.90793998 1.05346224 0.672996252 1 10.97954081 -7.779813609 23.39311679 0.913054986 0.774974954 0.318206582 0.096963165 136.8659739 174247.4269 0.03845018 0.025993551 1.66E-08 7.779813609 -0.138080032 GDQCCYSHS(ph)PPT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 GDQCCYSHSPPTPR 14 0 Q9NXH9-2;Q9NXH9 Q9NXH9-2 TRMT1 tRNA (guanine(26)-N(2))-dimethyltransferase 2 GDQCCYS(0.008)HS(0.993)PPT(1)PR 66.152 0.027704 0 1343.9 1196.9 1504.2 1636.1 1459.1 1253.1 1393.3 1610.5 1335.2 1505 TRUE FALSE 1362.718746 1327.58159 1124.446106 1531.167869 1657.854123 1475.319691 1657.671401 1473.677973 1463.451926 1198.280174 1.137228818 1.107905829 0.938383302 1.277804559 1.383527959 1.231197614 1.383375472 1.229827552 1.221293615 1 10.22674955 -6.284822249 24.6097731 1.267042058 1.065845967 0.354238709 0.112429387 595.0375481 626257.7912 0.030362363 0.045069563 5.19E-07 6.284822249 -0.201196091 GDQCCYSHS(ph)PPTPR ddPTM_K562_Paclitaxel_30min_R1 4 GDQCCYSHSPPTPR 14 0 Q9NXH9-2;Q9NXH9 Q9NXH9-2 TRMT1 tRNA (guanine(26)-N(2))-dimethyltransferase 1 GDQCCYS(0.001)HS(0.981)PPT(0.019)PR;GDQCCYSHS(0.997)PPT(0.002)PR;GDQCCYS(0.035)HS(0.964)PPT(0.001)PR;GDQCCYS(0.027)HS(0.487)PPT(0.487)PR 126.4 0.00027064 245283000 6622 6338.6 7456.1 7033.16 6378.3 6572.46 6024.23 6868.09 6371.44 6708.2 TRUE FALSE 6714.728431 7030.669784 5573.715339 6582.084597 7247.132446 7737.993499 7167.296194 6284.602885 6983.44528 5341.065158 1.257189012 1.316342261 1.043558761 1.232354297 1.356870256 1.448773469 1.341922628 1.176657221 1.307500484 1 12.38291177 -11.0657474 1.119257872 0.975202618 1.275477703 0.384251039 0.104666382 379.3656022 176.5621369 33.64387667 0.033938415 8.60E-12 11.0657474 0.300275084 GDQCCYSHSPPT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 GDQCCYSHSPPTPR 14 0 Q9NXH9-2;Q9NXH9 Q9NXH9-2 TRMT1 tRNA (guanine(26)-N(2))-dimethyltransferase 1 GDQCCYSHS(0.012)PPT(0.988)PR;GDQCCYSHSPPT(1)PR;GDQCCYSHSPPT(1)PR;GDQCCYSHSPPT(1)PR 151.31 7.80E-05 52913000 6892 5969.5 5541.23 5273.52 5445.33 5809.16 6184.7 7224.7 5627.42 8515.8 TRUE FALSE 6988.509264 6621.270198 4142.277953 4935.300031 6187.076136 6839.332961 7358.214539 6610.91664 6167.958835 6780.275286 1.030711729 0.976548874 0.610930645 0.727890804 0.912511052 1.008710218 1.085238317 0.975021863 0.909691506 1 12.72712813 -7.023273309 4.940617838 0.997207751 0.828740957 0.290764391 0.116847816 0.26510831 17.44904943 0.042368888 0.044589498 9.48E-08 7.023273309 -0.168466794 GDQVLNFS(ph)DAEDLIDDSK ddPTM_K562_Paclitaxel_30min_R1 1 GDQVLNFSDAEDLIDDSK 18 0 F8W126;Q96EZ8-3;Q96EZ8;Q96EZ8-2;Q96EZ8-4 F8W126 MCRS1 Microspherule protein 1 1 GDQVLNFS(0.997)DAEDLIDDS(0.003)K 77.847 0.019499 0 468.33 485.22 801.95 630.85 317.32 358.83 325.21 693.97 389.42 872.38 TRUE FALSE 474.8880649 538.1979605 599.4878041 590.3901046 360.5443563 422.4634623 386.9168998 635.0129169 426.825531 694.5884771 0.68369701 0.774844355 0.863083428 0.849985458 0.519076213 0.608221236 0.557044801 0.914228983 0.614501313 1 9.440014667 -11.0933151 4.476123157 1.000023499 0.712956849 0.309789277 0.130028002 202792542.6 3.927580298 52442.15895 0.033033629 8.07E-12 11.0933151 -0.28706665 GDRSEDFGVNEDLADSDAR ddPTM_K562_Paclitaxel_30min_R1 3 GDRSEDFGVNEDLADSDAR 19 1 P04083 P04083 ANXA1 Annexin A1 0 ;; 197.67 7.07E-18 376952000 5252.8 5523 5601.8 5437.6 5180.5 4735.8 5589.4 6542 5507.3 7479.9 FALSE TRUE 5326.355406 6126.019818 4187.556308 5088.856674 5886.171807 5575.627636 6649.959471 5986.216266 6036.300772 5955.492274 0.894360224 1.02863366 0.703141926 0.854481282 0.988360246 0.936216081 1.116609537 1.005158934 1.013568735 1 12.54000505 -7.057769759 1.997321013 1.025497137 0.872242324 0.386844164 0.085125503 0.360695532 2.86970655 0.032968319 0.034772292 8.75E-08 7.057769759 -0.153254812 GDS(ph)ES(ph)EEDEQDSEEVR ddPTM_K562_Paclitaxel_30min_R1 1 GDSESEEDEQDSEEVR 16 0 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 2 GDS(1)ES(1)EEDEQDSEEVR 140.77 9.19E-08 18770000 2076.2 2076.7 3029.4 2274.5 2069.4 1949 1867.1 2281.8 1666.3 2345.2 TRUE FALSE 2105.273206 2303.441129 2264.590503 2128.62375 2351.287315 2294.627785 2221.372478 2087.946847 1826.35556 1867.246953 1.127474436 1.233602832 1.212796465 1.139979769 1.259226752 1.228882865 1.189651147 1.118195343 0.978100705 1 10.86669703 -8.572107654 2.502241047 0.98539259 1.201990656 0.816725717 0.039309343 0.115739879 1.357609522 0.033121175 0.010646784 2.68E-09 8.572107654 0.216598065 GDS(ph)LKEPTSIAESSR ddPTM_K562_Paclitaxel_30min_R1 1 GDSLKEPTSIAESSR 15 1 Q9C0B5-2;Q9C0B5;H0YEF4 Q9C0B5-2;H0YEF4 ZDHHC5 Palmitoyltransferase ZDHHC5;Palmitoyltransferase 1 GDS(0.957)LKEPT(0.028)S(0.015)IAESSR 99.392 0.016304 14416000 1236.9 1159.4 2634.4 1482.2 938.84 1154.7 1067.7 1823.1 1047.8 2292.7 TRUE FALSE 1254.220416 1285.987213 1969.313138 1387.138326 1066.725903 1359.469832 1270.290501 1668.216276 1148.445872 1825.446482 0.687075972 0.704478179 1.078811764 0.75988989 0.584364381 0.74473278 0.695879345 0.913867535 0.629131494 1 10.83403366 -11.5165214 5.748009005 1.000397387 0.761079938 0.223480777 0.136431834 0.000708779 5.96E-05 0.134760964 0.032630969 3.04E-12 11.5165214 -0.239317449 GDSES(ph)EEDEQDSEEVR ddPTM_K562_Paclitaxel_30min_R1 2 GDSESEEDEQDSEEVR 16 0 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 1 GDS(0.011)ES(0.989)EEDEQDSEEVR;GDSES(1)EEDEQDSEEVR 238.05 1.37E-50 12460000 1041.02 896.63 1294.04 1152.71 990.18 1118.02 927.76 1089.21 779.19 1396.98 TRUE FALSE 1055.597492 994.5270956 967.3435975 1078.78034 1125.05928 1316.285149 1103.797617 996.6748119 854.034681 1112.274709 0.949043868 0.894138011 0.869698456 0.969886604 1.011494077 1.183417314 0.992378598 0.896068933 0.767827115 1 10.11929743 -4.967424686 15.42012724 0.956496029 0.925457221 0 0.104186012 38010658.02 520990519.3 0.028505855 30944096.76 1.08E-05 4.967424686 -0.031038808 GDSIEEILADS(ph)EDEEDNEEEER ddPTM_K562_Paclitaxel_30min_R1 1 GDSIEEILADSEDEEDNEEEER 22 0 Q5JTH9-2;Q5JTH9-3;Q5JTH9 Q5JTH9-2 RRP12 RRP12-like protein 1 GDSIEEILADS(1)EDEEDNEEEER 158.65 4.48E-18 20768000 2582.8 2660.8 3477.2 2996.3 2396.8 2624 2919.8 3563 1892.5 4019 TRUE FALSE 2618.967169 2951.315142 2599.337855 2804.130729 2723.284738 3089.329557 3473.816808 3260.30091 2074.283081 3199.925594 0.818446271 0.922307427 0.812311967 0.876311229 0.851046269 0.965437935 1.085592994 1.018867725 0.648228535 1 11.64382264 -7.25979278 24.10234905 0.953677646 0.858455558 0.12930485 0.111989013 186.4354754 2728985.294 0.038296867 0.036362773 5.50E-08 7.25979278 -0.095222088 GDSIEEILADS(ph)EDEEDNEEEERSR ddPTM_K562_Paclitaxel_30min_R1 4 GDSIEEILADSEDEEDNEEEERSR 24 1 Q5JTH9-2;Q5JTH9-3;Q5JTH9 Q5JTH9-2 RRP12 RRP12-like protein 1 GDSIEEILADS(1)EDEEDNEEEERSR;GDSIEEILADS(1)EDEEDNEEEERSR;GDS(0.001)IEEILADS(0.992)EDEEDNEEEERS(0.007)R;GDSIEEILADS(1)EDEEDNEEEERSR 158.75 1.42E-25 306600300 4784.18 4306.83 5887.52 5655.27 4570.54 4506.16 4287.8 4861.54 4658.68 6154.73 TRUE FALSE 4851.17328 4777.064264 4401.14276 5292.566294 5193.124928 5305.264206 5101.387666 4448.521832 5106.16703 4900.392648 0.989956036 0.974832959 0.898120432 1.080029025 1.059736495 1.082620228 1.041016105 0.907788855 1.041991407 1 12.25868164 -6.265515823 24.99847265 1.030446167 0.956356125 0.309689289 0.052074048 471.8402173 2893525.606 0.015665291 0.024227881 5.43E-07 6.265515823 -0.074090042 GDTVSAS(ph)PCSAPLAR ddPTM_K562_Paclitaxel_30min_R1 1 GDTVSASPCSAPLAR 15 0 Q15477 Q15477 SKIV2L Helicase SKI2W 1 GDTVS(0.001)AS(0.964)PCS(0.035)APLAR 119.54 0.00075828 14971000 1530.5 1524.3 1907.8 1589.8 1377.4 1288.2 1467.1 1834.6 1141.3 1531.2 TRUE FALSE 1551.931722 1690.728229 1426.152295 1487.837344 1565.0252 1516.644183 1745.474566 1678.739279 1250.926964 1219.1406 1.272971897 1.386819723 1.16980133 1.220398487 1.283711821 1.244027295 1.431725403 1.376985788 1.026072764 1 10.2516488 -8.773572545 24.52655011 1.013035924 1.296526969 0.689676543 0.0765344 119.4345846 241420.918 0.07652969 0.020396025 1.68E-09 8.773572545 0.283491045 GDVEGSQS(ph)QDEGEGSGESER ddPTM_K562_Paclitaxel_30min_R1 1 GDVEGSQSQDEGEGSGESER 20 0 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 1 GDVEGS(0.111)QS(0.889)QDEGEGSGESER 190.57 5.93E-17 10348000 663.03 461.16 667.22 382.36 525.84 372.79 400.41 418.14 425.8 633.91 TRUE FALSE 672.3144656 511.5110083 498.7720589 357.837141 597.4683105 438.8990723 476.3857072 382.6163971 466.6999925 504.718794 1.332057521 1.013457423 0.988217726 0.708983191 1.183764737 0.8695913 0.943863618 0.758078363 0.924673299 1 8.979335999 -5.149761516 1.689927882 0.912467917 1.566232095 0.496902941 0.124016866 1.060101031 2.387320019 0.033178207 1.223535099 7.08E-06 5.149761516 0.653764178 GDVTAEEAAGAS(ph)PAK ddPTM_K562_Paclitaxel_30min_R1 2 GDVTAEEAAGASPAK 15 0 P49006 P49006 MARCKSL1 MARCKS-related protein 1 GDVT(0.001)AEEAAGAS(0.999)PAK;GDVTAEEAAGAS(1)PAK 102.39 0.004221 199932000 4785.6 5081.1 8747.9 5923.4 4424 4053.2 4072.5 5993.2 3429.31 7117.7 TRUE FALSE 4852.613165 5635.871681 6539.384452 5543.499636 5026.623699 4771.97811 4845.235615 5484.040252 3758.710548 5667.108833 0.856276685 0.994487992 1.153918981 0.978188314 0.88698203 0.84204808 0.854974866 0.9676963 0.663250108 1 12.46839719 -6.750901591 3.845048682 0.863652509 1.009856426 0.251504864 0.10725948 0.289471461 9.347402094 0.032956777 0.040899928 1.77E-07 6.750901591 0.146203917 GDVTAEEAAGAS(ph)PAKANGQENGHVK ddPTM_K562_Paclitaxel_30min_R1 1 GDVTAEEAAGASPAKANGQENGHVK 25 1 P49006 P49006 MARCKSL1 MARCKS-related protein 1 GDVTAEEAAGAS(1)PAKANGQENGHVK 75.3 0.00021308 40854000 3503.7 2408.3 6184 3408.9 2491.5 2093.3 1973 3380 3034.2 4524.7 TRUE FALSE 3552.76261 2671.246338 4622.772717 3190.268412 2830.884481 2464.517364 2347.36645 3092.847903 3325.648467 3602.563656 0.98617622 0.741484841 1.283189739 0.885555042 0.785797213 0.68410099 0.651582227 0.858513047 0.923133853 1 11.81480821 -6.518590883 23.80554639 0.798860416 0.995231806 0.217723504 0.155524915 139.8912602 776658.8622 0.045923324 0.060907794 3.03E-07 6.518590883 0.196371391 GEAPGAETPS(ph)LR ddPTM_K562_Paclitaxel_30min_R1 1 GEAPGAETPSLR 12 0 C9JE12;C9JCW7;A0A590UJA9;Q9BVT8 C9JE12 TMUB1 Transmembrane and ubiquitin-like domain-containing protein 1 1 GEAPGAET(0.14)PS(0.86)LR 109.6 0.0061327 15316000 1445.2 1051.9 740.66 778.56 916.27 1173.4 1316.4 1358.5 1641.1 2055.3 TRUE FALSE 1465.437259 1166.749999 553.6712226 728.6266463 1041.081487 1381.486015 1566.180028 1243.086946 1798.734988 1636.428732 0.895509368 0.712985525 0.338341177 0.445254127 0.636191156 0.84420787 0.957071944 0.759634026 1.099183211 1 10.67633506 -7.31860233 2.87696921 0.931473289 0.583147938 0.514559815 0.160484571 0.247907091 4.061942563 0.065018597 0.05809887 4.80E-08 7.31860233 -0.34832535 GEAVLRPGLDAEPELS(ph)PEEQR ddPTM_K562_Paclitaxel_30min_R1 1 GEAVLRPGLDAEPELSPEEQR 21 1 C9JQV0;Q9BRJ6 C9JQV0 C7orf50 Uncharacterized protein C7orf50 1 GEAVLRPGLDAEPELS(1)PEEQR 54.56 0.028353 16442000 493.54 394.18 516.88 479.3 249.14 350.07 475.12 481.65 278.52 458.42 TRUE FALSE 500.4510827 437.2179054 386.3872513 448.5598433 283.077086 412.1499993 565.2715397 440.7308261 305.2730905 364.9937524 1.371122326 1.197877779 1.058613329 1.228952113 0.775566935 1.129197408 1.548715659 1.207502384 0.836378948 1 8.511727959 -5.348721796 2.856096604 1.115890053 1.393216362 0.13828517 0.204941139 0.771782066 9.685407006 0.055543272 0.444876607 4.48E-06 5.348721796 0.277326309 GEEGPPS(ph)LEYIQAK ddPTM_K562_Paclitaxel_30min_R1 1 GEEGPPSLEYIQAK 14 0 Q9NYA4;J3QR65;J3QRJ2 Q9NYA4 MTMR4 Myotubularin-related protein 4 1 GEEGPPS(1)LEYIQAK 130.72 2.70E-10 0 646.14 456.6 753.17 703.59 430.17 510 585.77 582.6 549.2 693.48 TRUE FALSE 655.1879535 506.4531321 563.0229184 658.4648866 488.7664368 600.4413392 696.9167996 533.1044935 601.9531139 552.1483953 1.186615698 0.917240974 1.019694928 1.192550575 0.885208471 1.087463704 1.262191116 0.96550945 1.09020169 1 9.108912247 -7.474254745 24.99976726 1.090634184 1.035304552 0.025447636 0.1173182 1384.529901 711849.3685 0.040579692 0.035787211 3.36E-08 7.474254745 -0.055329632 GEEGS(ph)DDDETENGPKPK ddPTM_K562_Paclitaxel_30min_R1 2 GEEGSDDDETENGPKPK 17 1 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 GEEGS(1)DDDETENGPKPK;GEEGS(1)DDDETENGPKPK 114.56 0.00036935 74175000 3463.4 2697.8 8297.7 4533 2577.9 2034.4 2141.1 4053.3 2966.3 5675.5 TRUE FALSE 3511.898286 2992.354927 6202.84301 4242.273669 2929.053624 2395.172276 2547.362548 3708.946865 3251.226369 4518.829985 0.77716982 0.662196838 1.372665719 0.938799132 0.648188499 0.530042574 0.563721706 0.820775926 0.71948411 1 12.14173356 -6.754213337 23.38792098 0.688058924 0.949097104 0.205145315 0.211970359 110.8475128 358765.4761 0.065334243 0.082418855 1.76E-07 6.754213337 0.26103818 GEENT(ph)DY(ph)VNAS(ph)FIDGY(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 GEENTDYVNASFIDGYR 17 0 P18433-6;P18433 P18433-6 PTPRA Receptor-type tyrosine-protein phosphatase alpha 4 GEENT(1)DY(1)VNAS(1)FIDGY(1)R 79.317 0.030888 30896000 0 0 0 0 0 0 0 0 0 55.962 TRUE FALSE 0 0 0 0 0 0 0 0 0 44.55691368 0 0 0 0 0 0 0 0 0 1 5.4775774 GEFFSY(ph)S(ph)DHSQQDSVQEGEK ddPTM_K562_Paclitaxel_30min_R1 1 GEFFSYSDHSQQDSVQEGEK 20 0 F8WEC7;Q8WTR7 F8WEC7 ZNF473 Zinc finger protein 473 2 GEFFS(0.489)Y(0.614)S(0.881)DHS(0.015)QQDS(0.001)VQEGEK 58.093 0.030101 0 703.33 642.04 1091.1 732.62 696.63 553.02 593.12 652.62 708.45 1127.6 TRUE FALSE 713.17879 712.1400984 815.6383104 685.6330323 791.5228 651.0903322 705.6614237 597.1758575 776.4997879 897.794501 0.794367519 0.793210582 0.908491096 0.763685934 0.881630261 0.725210871 0.785994371 0.665158738 0.864897019 1 9.81024145 -3.893983398 17.58717986 0.807536695 0.159770985 0 0.092643741 0 0 0.019938015 0 0.000127649 3.893983398 -0.64776571 GEFS(ph)ASPMLK ddPTM_K562_Paclitaxel_30min_R1 1 GEFSASPMLK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 GEFS(0.609)AS(0.391)PMLK 134.98 0.00098623 788450000 4761.2 3960.6 7501.6 5112.7 4330.2 3868.9 3475.3 5084.3 3608.4 5179.4 TRUE FALSE 4827.87149 4393.031702 5607.728301 4784.794306 4920.046551 4554.995093 4134.720033 4652.35698 3955.002943 4123.835437 1.170723605 1.06527813 1.359833191 1.160277702 1.193075385 1.10455307 1.002639435 1.128162617 0.959059352 1 12.00977105 -7.462365965 2.777797562 1.032824797 1.191352715 0.49553902 0.079126329 0.253534754 3.866771276 0.031470204 0.025818763 3.45E-08 7.462365965 0.158527918 GEFSAS(ph)PMLK ddPTM_K562_Paclitaxel_30min_R1 5 GEFSASPMLK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 GEFS(0.153)AS(0.847)PMLK;GEFS(0.092)AS(0.908)PMLK;GEFS(0.079)AS(0.921)PMLK;GEFS(0.004)AS(0.996)PMLK;GEFS(0.005)AS(0.995)PMLK 116.84 0.0036382 858848000 14839.4 12954.5 22318.3 16992.7 13111 12175.6 11309.2 16385 13092.1 18005.3 TRUE FALSE 15047.19738 14368.91612 16683.76914 15902.86428 14896.94017 14334.77171 13455.06166 14992.99198 14349.6547 14335.80998 1.049623105 1.002309332 1.163782804 1.109310482 1.039141855 0.999927575 0.938563059 1.045841986 1.000965744 1 13.8073358 -7.042631525 3.58064877 0.99688921 1.081287163 0.429643211 0.045587839 0.250389911 6.59016068 0.016435754 0.017263439 9.07E-08 7.042631525 0.084397953 GEGDAPFSEPGTT(ph)STQRPSSPETATK ddPTM_K562_Paclitaxel_30min_R1 1 GEGDAPFSEPGTTSTQRPSSPETATK 26 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 GEGDAPFSEPGT(0.085)T(0.212)S(0.212)T(0.212)QRPS(0.131)S(0.131)PET(0.016)AT(0.001)K 63.522 0.017666 261330000 2792.2 2194.7 4991.2 3115.1 2816.1 2718.2 2284.7 3187.1 1852.7 3592.2 TRUE FALSE 2831.299415 2434.324768 3731.10983 2915.311429 3199.700497 3200.234605 2718.209898 2916.335962 2030.660113 2860.107668 0.989927563 0.851130464 1.304534746 1.019301288 1.118734281 1.118921025 0.950387263 1.019659502 0.70999429 1 11.48185374 -8.315520399 1.953718861 0.870442908 1.06375612 0.228472869 0.13317801 0.507823937 3.573109292 0.099488394 0.03831724 4.84E-09 8.315520399 0.193313212 GEGDAPFSEPGTTST(ph)QRPSSPETATK ddPTM_K562_Paclitaxel_30min_R1 1 GEGDAPFSEPGTTSTQRPSSPETATK 26 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 GEGDAPFS(0.06)EPGT(0.068)T(0.068)S(0.068)T(0.285)QRPS(0.216)S(0.216)PET(0.017)AT(0.002)K 64.589 0.013603 86144000 2651.4 2539.8 4031.1 2746.5 2336.4 1919.5 2138.2 2609.3 1786.9 3824.6 TRUE FALSE 2688.52778 2817.103953 3013.398949 2570.351783 2654.657236 2259.896374 2543.912288 2387.623678 1958.539729 3045.144421 0.882890073 0.925113415 0.989575052 0.844082062 0.871767269 0.742131098 0.835399553 0.784075679 0.643168093 1 11.57229494 -6.764764276 1.75529959 0.791135143 0.928608119 0.250555954 0.090031176 0.432535458 2.755287165 0.030655081 0.040586358 1.72E-07 6.764764276 0.137472977 GEGDAPFSEPGTTSTQRPS(ph)SPETATK ddPTM_K562_Paclitaxel_30min_R1 1 GEGDAPFSEPGTTSTQRPSSPETATK 26 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 GEGDAPFS(0.001)EPGTTST(0.012)QRPS(0.491)S(0.491)PET(0.003)ATK 84.025 5.60E-05 234200000 2655.3 2314.8 4632.7 3319.6 2660.5 1963.9 2264.3 2757.8 1751.8 3182.7 TRUE FALSE 2692.482392 2567.537692 3463.117588 3106.695714 3022.905143 2312.17009 2693.939105 2523.507676 1920.068217 2534.063993 1.062515548 1.013209492 1.366625941 1.225973662 1.192907974 0.912435557 1.0630904 0.995834234 0.757703129 1 11.30723724 -7.257570359 24.85228814 0.952882159 1.177194839 0.487254885 0.115971794 296.922715 1907258.139 0.041149232 0.039681371 5.53E-08 7.257570359 0.22431268 GEGPAIPGDT(ph)PPPTPR ddPTM_K562_Paclitaxel_30min_R1 1 GEGPAIPGDTPPPTPR 16 0 O75145-2;O75145 O75145-2 PPFIA3 Liprin-alpha-3 1 GEGPAIPGDT(0.999)PPPT(0.001)PR 110.6 0.0026547 40007000 4669.5 3918.1 4239.9 4982.9 4737.1 3759.3 4525.9 4876.3 3121.8 5043 TRUE FALSE 4734.887407 4345.891408 3169.484807 4663.319097 5382.37322 4425.959072 5384.665898 4462.027878 3421.662839 4015.233832 1.179230801 1.082350765 0.789364938 1.161406606 1.340488112 1.102291736 1.341059107 1.111274726 0.852170255 1 11.97126829 -4.459985675 16.42151918 1.105754111 1.082838833 0 0.171797995 0 0 0.040795976 0 3.47E-05 4.459985675 -0.022915277 GEGPGEAGGPLT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 GEGPGEAGGPLTPR 14 0 P50548;P50548-2 P50548 ERF ETS domain-containing transcription factor ERF 1 GEGPGEAGGPLT(1)PR 150.9 0.00017282 60922000 792.07 747.81 931.8 835.84 707.01 623.53 680.76 1063.6 738.12 1203.2 TRUE FALSE 803.1614237 829.4584247 696.5555656 782.2329635 803.3167318 734.1042907 809.9306562 973.2405412 809.019724 957.9871795 0.838384313 0.865834577 0.727103223 0.816538029 0.838546432 0.766298659 0.845450413 1.015922303 0.844499531 1 9.903862539 -8.078425808 6.000663731 0.946478469 0.809020197 0.568751109 0.056293819 0.169133899 10.16754048 0.025615592 0.014738555 8.35E-09 8.078425808 -0.137458272 GEHGFIGCR ddPTM_K562_Paclitaxel_30min_R1 1 GEHGFIGCR 9 0 Q16658;C9JPH9;C9JFC0;A0A0A0MSB2 Q16658 FSCN1 Fascin 0 93.178 0.030714 4684500 669.74 938.04 821.64 896.16 838.87 707.77 879.35 819.34 741.33 1214.7 FALSE TRUE 679.1184263 1040.458379 614.2068201 838.6843087 953.1382962 833.2830719 1046.202072 749.7319528 812.5380589 967.1434732 0.702189949 1.075805615 0.635073117 0.867176724 0.985519029 0.861591992 1.081744437 0.775202412 0.840142214 1 9.917586115 -6.523609412 24.99842898 0.918356139 0.818105129 0.134533435 0.134555369 57.78010648 1976770.629 0.038364261 0.049983417 2.99E-07 6.523609412 -0.10025101 GEIEFEVVYVAPEVDS(ph)DDENVEYEDESGHR ddPTM_K562_Paclitaxel_30min_R1 1 GEIEFEVVYVAPEVDSDDENVEYEDESGHR 30 0 A0A0J9YVX5;F5H1Y4;Q9HD26-2;Q9HD26 A0A0J9YVX5 GOPC Golgi-associated PDZ and coiled-coil motif-containing protein 1 GEIEFEVVY(0.005)VAPEVDS(0.889)DDENVEY(0.097)EDES(0.009)GHR 80.664 7.27E-06 4884900 550.14 514.75 804.46 547.87 543.34 435.36 638.07 533.53 570.91 761.3 TRUE FALSE 557.8436573 570.9521458 601.3641236 512.7320704 617.3521068 512.5649832 759.1404516 488.2032963 625.7484564 606.1466421 0.920311388 0.941937324 0.992109964 0.845887834 1.018486392 0.84561218 1.252403954 0.805421102 1.032338403 1 9.24352305 GELS(ph)PSFLNPPLPPSIDDR ddPTM_K562_Paclitaxel_30min_R1 3 GELSPSFLNPPLPPSIDDR 19 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 GELS(0.984)PS(0.016)FLNPPLPPSIDDR;GELS(0.811)PS(0.189)FLNPPLPPSIDDR;GELS(0.842)PS(0.158)FLNPPLPPSIDDR 99.13 0.00066956 7002200 1992.34 2191.96 2672.61 2593.02 2061.89 1892.02 2685.71 2758.44 1103.12 3312.08 TRUE FALSE 2020.238907 2431.285606 1997.876551 2426.715303 2342.754326 2227.543182 3195.309452 2524.093304 1209.079605 2637.076278 0.766090433 0.921962564 0.757610452 0.920229469 0.888390808 0.844701839 1.211686396 0.957155971 0.458492466 1 11.36472359 -6.291739553 23.47815422 0.905996088 0.825895232 0.038944739 0.180803212 1284.680465 995433.7801 0.051909995 0.077010981 5.11E-07 6.291739553 -0.080100856 GELSPS(ph)FLNPPLPPSIDDR ddPTM_K562_Paclitaxel_30min_R1 2 GELSPSFLNPPLPPSIDDR 19 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 GELS(0.17)PS(0.774)FLNPPLPPS(0.056)IDDR;GELS(0.357)PS(0.643)FLNPPLPPSIDDR 138.97 3.94E-13 18419500 1646.7 1808.41 1949.03 1920.71 1681.83 1451.48 2095.88 2366 1079.7 2427.5 TRUE FALSE 1669.758881 2005.858319 1456.973271 1797.524257 1910.92372 1708.879598 2493.562289 2164.993532 1183.410009 1932.774168 0.863918252 1.037813084 0.753824888 0.930022911 0.988694774 0.88415896 1.290146739 1.120148214 0.612285713 1 10.91645736 -6.9083699 1.968256044 1.007101664 0.895396247 0.047947246 0.174817396 1.007229981 7.968213349 0.064187398 0.075173819 1.23E-07 6.9083699 -0.111705417 GELSPS(ph)FLNPPLPPSIDDRDLSTEEVR ddPTM_K562_Paclitaxel_30min_R1 1 GELSPSFLNPPLPPSIDDRDLSTEEVR 27 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 GELS(0.386)PS(0.603)FLNPPLPPS(0.011)IDDRDLSTEEVR 112.35 6.06E-10 590760000 1070.2 895.05 920.26 960.5 659.71 701.37 1001.7 715.45 524.39 921.79 TRUE FALSE 1085.186102 992.7745859 687.9289814 898.897829 749.573671 825.7481218 1191.767346 654.6680568 574.7600025 733.928692 1.478598825 1.352685345 0.937324006 1.22477543 1.021316756 1.125106745 1.623818988 0.892004992 0.783127855 1 9.519496088 -5.595960403 5.785479186 1.097478008 1.449509284 0.281996836 0.21848605 0.249153709 14.21420535 0.057969118 0.160592881 2.54E-06 5.595960403 0.352031276 GELSPSFLNPPLPPS(ph)IDDRDLSTEEVR ddPTM_K562_Paclitaxel_30min_R1 2 GELSPSFLNPPLPPSIDDRDLSTEEVR 27 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 GELS(0.001)PSFLNPPLPPS(0.999)IDDRDLSTEEVR;GELS(0.008)PS(0.003)FLNPPLPPS(0.988)IDDRDLSTEEVR 120.33 1.69E-12 679150000 1846.95 2094.2 2312.7 2235.12 1812.53 1726.51 2250.06 2439.6 1608.63 2613.5 TRUE FALSE 1872.812998 2322.851838 1728.830282 2091.769407 2059.427272 2032.682307 2676.997139 2232.340752 1763.146099 2080.867265 0.900015599 1.116290249 0.83082199 1.00523923 0.989696607 0.97684381 1.286481451 1.07279344 0.847313103 1 11.02296923 -7.574723991 24.99968522 1.068277229 0.972251443 0.09147455 0.121852541 225.0094818 108497.1748 0.046496249 0.036015844 2.66E-08 7.574723991 -0.096025785 GEPNVSY(ph)ICSR ddPTM_K562_Paclitaxel_30min_R1 4 GEPNVSYICSR 11 0 A8MT37;A0A3B3ITW1;P49841;P49841-2;P49840 A8MT37 GSK3A;GSK3B Glycogen synthase kinase-3 beta;Glycogen synthase kinase-3 alpha 1 GEPNVS(0.048)Y(0.952)ICSR;GEPNVS(0.039)Y(0.961)ICSR;GEPNVS(0.033)Y(0.967)ICSR;GEPNVS(0.036)Y(0.964)ICSR 201.09 1.89E-05 2746810000 6766.9 5897.49 6997.9 7037.8 6443.67 6870.56 6311.86 7391.1 6080.6 6683.13 TRUE FALSE 6861.657478 6541.397902 5231.193596 6586.427008 7321.406946 8088.957349 7509.502485 6763.179921 6664.668799 5321.104438 1.289517535 1.229330861 0.983102974 1.237793222 1.375918671 1.520165117 1.411267637 1.271010558 1.252497273 1 12.37751 -4.948224129 12.96349482 1.269451655 1.383205351 0 0.158683906 11120749.31 93575544.51 0.042585825 30078488.06 1.13E-05 4.948224129 0.113753696 GEPNVSYICSR ddPTM_K562_Paclitaxel_30min_R1 2 GEPNVSYICSR 11 0 A8MT37;A0A3B3ITW1;P49841;P49841-2;P49840 A8MT37 GSK3A;GSK3B Glycogen synthase kinase-3 beta;Glycogen synthase kinase-3 alpha 0 ; 167.18 0.0025868 33676000 1395.08 1363.68 1803.43 1481.19 1563.06 1134.96 1159.44 1212.52 1311.1 1571.39 FALSE TRUE 1414.615424 1512.571194 1348.131792 1386.193103 1775.975235 1336.22922 1379.437687 1109.508858 1437.037013 1251.139855 1.130661307 1.208954529 1.077522857 1.107944165 1.419485781 1.068009475 1.102544757 0.886798429 1.148582236 1 10.28902735 -7.663501539 2.950746699 1.020203275 1.182163776 0.295975882 0.11005166 0.325980551 5.713029091 0.046606101 0.033845993 2.17E-08 7.663501539 0.161960501 GEQVSQNGLPAEQGS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 GEQVSQNGLPAEQGSPR 17 0 A0A087WUZ3;Q01082;Q01082-3;Q01082-2 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 1 GEQVSQNGLPAEQGS(1)PR 157.62 1.35E-07 25820000 1640 2044.4 2360.7 1941.4 2156.6 2293.9 1875 2560.1 1351.6 2792.4 TRUE FALSE 1662.96506 2267.614506 1764.712088 1816.887293 2450.365432 2700.690957 2230.771462 2342.603525 1481.427219 2223.307347 0.747969039 1.01992849 0.793732855 0.817200238 1.102126269 1.214717776 1.003357212 1.053657079 0.666316882 1 11.11849168 -5.252718504 23.54830877 0.968684432 0.747968781 0.150028192 0.1534112 1031.085249 2784018.214 0.040058917 0.441851781 5.59E-06 5.252718504 -0.220715651 GEVPGGSAHYGGPS(ph)PEKK ddPTM_K562_Paclitaxel_30min_R1 2 GEVPGGSAHYGGPSPEKK 18 1 J3KS37;O94762-4;O94762 J3KS37 RECQL5 ATP-dependent DNA helicase Q5 1 GEVPGGSAHYGGPS(1)PEKK;GEVPGGS(0.001)AHY(0.094)GGPS(0.905)PEKK 89.831 0.0014725 34045000 3478.36 3086.24 8220.2 4357.9 3374.56 2632.55 2301.95 4616.4 3743.4 5789.2 TRUE FALSE 3527.067772 3423.20612 6144.908844 4078.403799 3834.232204 3099.39578 2738.732996 4224.208005 4102.970296 4609.357862 0.765197209 0.742664428 1.333137723 0.884809538 0.83183652 0.672413788 0.594168012 0.916441754 0.890139238 1 12.17035006 -6.70603811 4.107842862 0.793760748 0.95143815 0.077435473 0.186613883 0.488963865 16.81304487 0.059870261 0.07642772 1.97E-07 6.70603811 0.157677401 GFAFVTFES(ph)PADAKDAAR ddPTM_K562_Paclitaxel_30min_R1 2 GFAFVTFESPADAKDAAR 18 1 P38159;H0Y6E7;H3BT71;A0A1B0GUK8;H3BR27;P38159-3;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 GFAFVT(0.001)FES(0.999)PADAKDAAR;GFAFVT(0.028)FES(0.972)PADAKDAAR 109.37 0.00047988 26893000 3217.6 2872.9 4511.1 3225 2376.5 2353.11 2606.6 3808.5 4163.4 4379.9 TRUE FALSE 3262.656327 3186.572938 3372.217012 3018.162935 2700.219534 2770.401019 3101.188743 3484.944153 4563.313173 3487.273976 0.935589331 0.913771892 0.967006618 0.865479155 0.77430668 0.794431708 0.889287382 0.999331907 1.308561703 1 11.767884 -8.519371993 4.46466771 1.158731677 0.877166892 0.605849402 0.088993866 0.125814138 6.417445865 0.060890316 0.023758122 3.02E-09 8.519371993 -0.281564784 GFCFLEYEDHK ddPTM_K562_Paclitaxel_30min_R1 2 GFCFLEYEDHK 11 0 B7Z645;O60506-5;O60506-4;O60506-3;O60506-2;O60506;B4DT28;O43390-4;O43390-3;O43390;O43390-2 B7Z645;B4DT28 SYNCRIP;HNRNPR Heterogeneous nuclear ribonucleoprotein Q;Heterogeneous nuclear ribonucleoprotein R 0 ; 127.42 0.0029275 45190000 10220.2 9598.8 14522.6 10973.2 9710.8 9013.7 8613.4 11130.7 8811.5 13529.7 FALSE TRUE 10363.31433 10646.82945 10856.19002 10269.42807 11033.57537 10612.15314 10247.74769 10185.07756 9657.883946 10772.33971 0.962030033 0.988348839 1.007783852 0.953314539 1.024250595 0.985129825 0.951301942 0.945484252 0.896544688 1 13.39504401 -7.813477206 3.757370527 0.942176608 0.988262522 0.278087146 0.030045176 0.262443958 7.565250972 0.012612709 0.008494879 1.54E-08 7.813477206 0.046085914 GFDQTINLILDESHER ddPTM_K562_Paclitaxel_30min_R1 3 GFDQTINLILDESHER 16 0 F2Z2Y6;C9JIZ0;C9JNV3;O95777 F2Z2Y6 LSM8 U6 snRNA-associated Sm-like protein LSm8 0 ;; 140.75 3.14E-08 22346800 9844.2 10029 9462.4 9223.6 8809.9 8801.5 11535 13106.8 7998.1 14082.1 FALSE TRUE 9982.049172 11124.00014 7073.500091 8632.039579 10009.95753 10362.32245 13723.70603 11993.29553 8766.353241 11212.16029 0.890287769 0.992137095 0.630877539 0.769881928 0.892776885 0.924203916 1.224001948 1.069668576 0.781861213 1 13.45277665 -7.31960777 2.833119992 1.02685426 0.824546734 0.284581743 0.134593354 0.353366827 5.606695209 0.053476609 0.047743387 4.79E-08 7.31960777 -0.202307526 GFENVIHDKLPLQES(ph)EEEEREER ddPTM_K562_Paclitaxel_30min_R1 1 GFENVIHDKLPLQESEEEEREER 23 2 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5;C9JBL0 P23497-2 SP100 Nuclear autoantigen Sp-100 1 GFENVIHDKLPLQES(1)EEEEREER 73.934 0.0005584 32603000 1308.6 1026.8 2093.4 1336.8 1035.1 794.95 1097.1 1736.7 1123.4 1487.7 TRUE FALSE 1326.924437 1138.909496 1564.895279 1251.063631 1176.098144 935.9232208 1305.268998 1589.156495 1231.307589 1184.505923 1.120234531 0.961505953 1.321137572 1.05619027 0.992901868 0.790138067 1.101952276 1.341619711 1.039511551 1 10.2100697 -11.11299325 11.92721056 0.999996742 1.080618268 0.024107596 0.153799553 0 0 0.15641306 0.037935739 7.71E-12 11.11299325 0.080621526 GFGDGYNGYGGGPGGGNFGGS(ph)PGYGGGR ddPTM_K562_Paclitaxel_30min_R1 4 GFGDGYNGYGGGPGGGNFGGSPGYGGGR 28 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 GFGDGYNGY(0.001)GGGPGGGNFGGS(0.998)PGYGGGR;GFGDGYNGYGGGPGGGNFGGS(0.999)PGY(0.001)GGGR;GFGDGYNGYGGGPGGGNFGGS(1)PGYGGGR;GFGDGYNGYGGGPGGGNFGGS(1)PGYGGGR 122.3 1.71E-14 872070000 11579.3 11960 12775 12283.5 11007.2 10784.3 11342.7 12704.2 10779.7 13689.5 TRUE FALSE 11741.44593 13265.83325 9549.793251 11495.69129 12506.56699 12696.74419 13494.91811 11624.89891 11815.13835 10899.57239 1.077239135 1.217096669 0.876162194 1.054691953 1.147436482 1.164884615 1.238114454 1.066546329 1.084000173 1 13.41198392 GFGEYSRS(ph)PTF ddPTM_K562_Paclitaxel_30min_R1 4 GFGEYSRSPTF 11 1 D6REL5;Q6UWZ7-2;Q6UWZ7 D6REL5 FAM175A BRCA1-A complex subunit Abraxas 1 GFGEYSRS(1)PTF;GFGEYSRS(1)PTF;GFGEYSRS(0.999)PTF;GFGEYSRS(1)PTF 134.75 0.0023741 723900000 10058.3 9236.9 10922.4 10611.9 9023.9 9489.2 9240.1 10498.3 8850.4 10426.9 TRUE FALSE 10199.14723 10245.41598 8164.905033 9931.300231 10253.10796 11171.97639 10993.36074 9606.403887 9700.520465 8301.892057 1.228532865 1.234106142 0.983499301 1.196269497 1.235032675 1.345714484 1.324199431 1.15713428 1.168471042 1 13.01922446 -9.215208199 1.777200936 1.000834219 1.215106392 0.322810279 0.093090224 1.074295009 5.991667922 0.098385359 0.027808367 6.09E-10 9.215208199 0.214272173 GFGFGQGAGALVHS(ph)E ddPTM_K562_Paclitaxel_30min_R1 2 GFGFGQGAGALVHSE 15 0 E9PP21;P21291 E9PP21 CSRP1 Cysteine and glycine-rich protein 1 1 GFGFGQGAGALVHS(1)E;GFGFGQGAGALVHS(1)E 158.86 2.02E-06 114227000 5783.8 5326 6265.3 6496.3 6008.3 6078 6255.1 6205 5912.9 6573.6 TRUE FALSE 5864.791045 5907.510691 4683.547527 6079.656394 6826.732181 7155.847961 7441.972571 5677.84652 6480.860465 5233.896712 1.120540081 1.128702192 0.894849055 1.161592735 1.304330704 1.3672123 1.421879907 1.084822042 1.238247681 1 12.35366974 -6.516254692 11.0491938 1.254111277 1.051422555 0.285666579 0.131228096 0.296659531 463.4777082 0.038492762 0.052642771 3.05E-07 6.516254692 -0.202688722 GFGQS(ph)NSLPTAGSVGGGMGR ddPTM_K562_Paclitaxel_30min_R1 1 GFGQSNSLPTAGSVGGGMGR 20 0 G3V2R1;Q9UPU9-2;Q9UPU9-3;Q9UPU9 G3V2R1 SAMD4A Protein Smaug homolog 1 1 GFGQS(0.352)NS(0.295)LPT(0.352)AGSVGGGMGR 182 3.75E-16 12821000 1746 2078.3 2603.1 2086.4 1987.5 1964.1 1970.8 2192.7 1662.4 2420.1 TRUE FALSE 1770.449387 2305.215822 1945.91521 1952.587642 2258.231149 2312.405558 2344.749012 2006.416449 1822.080948 1926.882292 0.918815537 1.19634491 1.009877572 1.013340385 1.17196113 1.200076189 1.216861571 1.041276085 0.945610926 1 10.91205273 -8.520163857 12.96407917 0.979639588 1.10827191 0.237791585 0.093910905 0.354475602 1689.848813 0.06058258 0.024790183 3.02E-09 8.520163857 0.128632322 GFGQSNS(ph)LPTAGSVGGGMGR ddPTM_K562_Paclitaxel_30min_R1 1 GFGQSNSLPTAGSVGGGMGR 20 0 G3V2R1;Q9UPU9-2;Q9UPU9-3;Q9UPU9 G3V2R1 SAMD4A Protein Smaug homolog 1 1 GFGQS(0.002)NS(0.912)LPT(0.081)AGS(0.005)VGGGMGR 92.133 0.00098015 15095000 1455.7 1216.7 1909.3 1574.4 1430.2 1205.7 1415.9 1664.2 1012.3 1723.9 TRUE FALSE 1476.084291 1349.543421 1427.273601 1473.425031 1625.017453 1419.513966 1684.559634 1522.815822 1109.535938 1372.568234 1.075417786 0.983225014 1.03985621 1.073480352 1.183924714 1.034202841 1.227304838 1.109464568 0.808364867 1 10.42266216 -8.746167317 24.99999435 0.904182428 1.090754124 0.465882203 0.079952314 181.8273019 297649.8545 0.055375653 0.020757078 1.79E-09 8.746167317 0.186571696 GFGS(ph)VEELCTNSSLGMEK ddPTM_K562_Paclitaxel_30min_R1 1 GFGSVEELCTNSSLGMEK 18 0 Q2NKX8;B5MDQ0 Q2NKX8 ERCC6L DNA excision repair protein ERCC-6-like 1 GFGS(0.999)VEELCT(0.001)NSSLGMEK 144.3 2.46E-10 27110000 2062.1 1671.8 3283.7 2664.4 1794.7 1614.2 1592.2 1938.4 2023.2 2639.1 TRUE FALSE 2090.975762 1854.332778 2454.689323 2493.517309 2039.168525 1900.455706 1894.311638 1773.720821 2217.5374 2101.249971 0.99511043 0.882490329 1.168204334 1.186682852 0.970454992 0.904440562 0.901516556 0.844126518 1.055342025 1 11.03703208 -6.98693261 24.96771849 0.929823075 1.056581042 0.245595616 0.096406271 326.7597468 624332.7303 0.031794975 0.036032066 1.03E-07 6.98693261 0.126757967 GFGSSAPEGLEPDS(ph)MASAASALHLLSPRPR ddPTM_K562_Paclitaxel_30min_R1 1 GFGSSAPEGLEPDSMASAASALHLLSPRPR 30 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 GFGSSAPEGLEPDS(0.364)MAS(0.18)AAS(0.143)ALHLLS(0.312)PRPR 55.526 0.0021771 47705000 935.09 1164 1214.9 933.83 1189.3 873.74 1473.3 1455.4 845.79 2064.1 TRUE FALSE 948.184145 1291.089456 908.1834693 873.9383235 1351.302795 1028.685521 1752.850984 1331.754686 927.0319086 1643.435287 0.576952529 0.785604074 0.552612857 0.531775319 0.822242777 0.625936129 1.066577429 0.810348114 0.564081784 1 10.68249893 -7.160514316 1.762779438 0.830369795 0.627590315 0.264065959 0.157401712 0.535849753 3.30145819 0.063545016 0.062388918 6.91E-08 7.160514316 -0.202779479 GFGSSAPEGLEPDSMASAASALHLLS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 GFGSSAPEGLEPDSMASAASALHLLSPR 28 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 GFGSSAPEGLEPDSMASAAS(0.001)ALHLLS(0.999)PR;GFGSSAPEGLEPDSMAS(0.001)AAS(0.026)ALHLLS(0.973)PR;GFGSSAPEGLEPDSMASAAS(0.003)ALHLLS(0.997)PR;GFGSSAPEGLEPDSMAS(0.001)AAS(0.006)ALHLLS(0.993)PR 158.59 4.66E-35 123644000 6593.43 7375.3 6990 6534.9 6697.97 6392.3 9104.9 10065.5 4512.16 10628 TRUE FALSE 6685.758362 8180.560196 5225.288049 6115.780763 7610.346912 7525.884653 10832.50724 9210.372948 4945.573129 8462.007766 0.790091258 0.966739859 0.617499794 0.722734005 0.899354754 0.889373404 1.280134401 1.088438253 0.584444409 1 13.04678429 -7.145819487 2.484181963 0.997185125 0.780581984 0.191778954 0.183112778 0.4792727 5.782967094 0.069268557 0.069025054 7.15E-08 7.145819487 -0.216603141 GFGSSAPEGLEPDSMASAASALHLLS(ph)PRPR ddPTM_K562_Paclitaxel_30min_R1 1 GFGSSAPEGLEPDSMASAASALHLLSPRPR 30 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 GFGSSAPEGLEPDS(0.001)MAS(0.005)AAS(0.017)ALHLLS(0.976)PRPR 93.073 3.22E-07 67559000 942.56 1174.8 1283.3 1112.2 1009.7 1154.5 1073.9 1786 836.39 1968.3 TRUE FALSE 955.758748 1303.068637 959.3150433 1040.86847 1147.238234 1359.234365 1277.666919 1634.268152 916.7289966 1567.15938 0.609866974 0.831484439 0.612136236 0.664175248 0.732049496 0.867323632 0.815275674 1.042821919 0.584962199 1 10.61393619 -7.161064292 3.230295577 0.863031629 0.686069559 0.316292075 0.128021346 0.322254967 6.409599151 0.042459898 0.042151309 6.90E-08 7.161064292 -0.17696207 GFLTQTRVRS(ph)AQSPEMESS(ph)SSDYYNK ddPTM_K562_Paclitaxel_30min_R1 1 GFLTQTRVRSAQSPEMESSSSDYYNK 26 2 H0YDP2;H7C0C9 H0YDP2 CCDC18 2 GFLT(0.04)QT(0.148)RVRS(0.668)AQS(0.148)PEMES(0.146)S(0.667)S(0.146)S(0.034)DY(0.003)Y(0.001)NK 57.484 0.01515 52987000 1570.2 1572.8 1840.7 1538.8 1269.1 897.7 1386 1508.4 1328.3 1685.6 TRUE FALSE 1592.187644 1744.523623 1375.99252 1440.108255 1441.972906 1056.894491 1648.986265 1380.252005 1455.88915 1342.073795 1.186363709 1.299871609 1.025273368 1.073046997 1.074436377 0.787508477 1.228685241 1.028447176 1.084805586 1 10.39024829 -5.768846229 24.98167842 1.039240476 1.24311767 0.375842014 0.105834573 150.8468949 508779.5197 0.027048543 0.058163206 1.70E-06 5.768846229 0.203877194 GFQFVSS(ph)SLPDICYR ddPTM_K562_Paclitaxel_30min_R1 1 GFQFVSSSLPDICYR 15 0 P62633-2;P62633-8;P62633-5;P62633;P62633-4;P62633-6 P62633-2 CNBP Cellular nucleic acid-binding protein 1 GFQFVS(0.104)S(0.448)S(0.448)LPDICYR 184.48 8.97E-07 12540000 2044.6 2032.7 1873.9 2195.3 2324.2 1683.9 1956.4 2510.8 1987.2 2662.5 TRUE FALSE 2073.230708 2254.63706 1400.810769 2054.503284 2640.795389 1982.516022 2327.616687 2297.491868 2178.079439 2119.881039 0.977993892 1.063567728 0.660796877 0.969159706 1.245728105 0.935201545 1.097994012 1.083783395 1.027453616 1 11.04976759 -6.529145308 24.99920188 1.068288591 0.900049973 0.274136644 0.121122098 202.6029151 808238.8052 0.03535786 0.045770134 2.96E-07 6.529145308 -0.168238618 GFS(ph)DSGGGPPAK ddPTM_K562_Paclitaxel_30min_R1 3 GFSDSGGGPPAK 12 0 Q9H307;G3V5F0;G3V579 Q9H307 PNN Pinin 1 GFS(0.994)DS(0.006)GGGPPAK;GFS(0.739)DS(0.261)GGGPPAK;GFS(0.878)DS(0.122)GGGPPAK 145.09 0.00012432 70643000 5142.2 4632.1 8124.1 5139 4416.28 4070 3646.71 4858.6 4299.68 5601.2 TRUE FALSE 5214.206665 5137.848343 6073.070477 4809.407541 5017.852104 4791.757354 4338.654185 4445.831604 4712.683475 4459.672365 1.169190523 1.152068565 1.361775032 1.07842172 1.125161602 1.074463988 0.972863885 0.996896462 1.056733116 1 12.12272201 -6.963420782 1.267556846 1.009494922 1.213032952 0.612639618 0.067155644 0.298829394 1.003189893 0.029294429 0.034469798 1.09E-07 6.963420782 0.20353803 GFS(ph)LEELR ddPTM_K562_Paclitaxel_30min_R1 4 GFSLEELR 8 0 P26373;J3QSB4;P26373-2 P26373 RPL13 60S ribosomal protein L13 1 GFS(1)LEELR;GFS(1)LEELR;GFS(1)LEELR;GFS(1)LEELR 131.12 0.00016853 110080000 14310.3 14252.2 18980.7 16862.3 14720.2 12503.3 11697.3 13845.9 9831.6 14007.4 TRUE FALSE 14510.68835 15808.30339 14188.78753 15780.82755 16725.34046 14720.5847 13916.80161 12669.60437 10775.96911 11152.68419 1.301093809 1.41744383 1.272230729 1.414980222 1.499669512 1.319914063 1.247843243 1.13601391 0.966222025 1 13.44510335 -8.277137631 1.454586978 0.980340564 1.378208723 0.853783543 0.064103825 0.157251091 0.592907901 0.054299609 0.020637846 5.28E-09 8.277137631 0.39786816 GFSLEELR ddPTM_K562_Paclitaxel_30min_R1 1 GFSLEELR 8 0 P26373;J3QSB4;P26373-2 P26373 RPL13 60S ribosomal protein L13 0 120.46 0.027495 59350000 3602.9 4460.2 4179.1 3764.3 3879.1 3697.4 4682.2 4728.8 4348.8 5050.7 FALSE TRUE 3653.351716 4947.179719 3124.034519 3522.874646 4407.499094 4353.081976 5570.623007 4327.058924 4766.521671 4021.364568 0.908485579 1.230224128 0.776859314 0.87603961 1.096020771 1.082488768 1.385256898 1.076017568 1.185299565 1 11.97346942 -7.031472587 2.890214193 1.165024492 0.95744685 0.286240335 0.144630337 0.34511306 5.793341747 0.050147368 0.053415946 9.30E-08 7.031472587 -0.207577642 GFSQYGVSGSPT(ph)K ddPTM_K562_Paclitaxel_30min_R1 2 GFSQYGVSGSPTK 13 0 Q9NXC5 Q9NXC5 MIOS WD repeat-containing protein mio 1 GFSQYGVSGS(0.043)PT(0.957)K;GFSQYGVS(0.002)GS(0.297)PT(0.7)K 171.08 0.00010372 134130000 5529.3 5030.9 7651.9 5227.2 4200 3881.2 4111.6 5664.5 3749.7 5864.6 TRUE FALSE 5606.727259 5580.190675 5720.083208 4891.950788 4772.111107 4569.476325 4891.754636 5183.265368 4109.875439 4669.391301 1.200740503 1.19505741 1.22501689 1.04766349 1.021998543 0.978602141 1.047621482 1.110051618 0.880173705 1 12.18901878 -6.342213589 4.007254441 1.014251748 1.206352813 0.723639197 0.05537435 0.120836114 3.642984187 0.015630418 0.024291742 4.55E-07 6.342213589 0.192101065 GFSVVADT(ph)PELQR ddPTM_K562_Paclitaxel_30min_R1 3 GFSVVADTPELQR 13 0 Q14847;Q14847-2;C9J9W2;Q14847-3 Q14847 LASP1 LIM and SH3 domain protein 1 1 GFSVVADT(1)PELQR;GFS(0.001)VVADT(0.999)PELQR;GFS(0.001)VVADT(0.999)PELQR 180.85 8.66E-05 394440000 11396.4 10218 10357 10123.6 8580.7 8007.6 9309.9 9901.1 10200 10912.2 TRUE FALSE 11555.98476 11333.6358 7742.247256 9474.317608 9749.536612 9427.635428 11076.40492 9059.939754 11179.75557 8688.28765 1.330064706 1.304472901 0.891113136 1.090470066 1.122147079 1.085097065 1.274866276 1.04277622 1.286761676 1 13.08485615 -5.563493539 24.95933044 1.106354425 1.323667276 0.380693701 0.111184445 126.8358864 77944.99557 0.027542386 0.072870524 2.73E-06 5.563493539 0.217312851 GFT(ph)DSPHYSDHLNDSR ddPTM_K562_Paclitaxel_30min_R1 3 GFTDSPHYSDHLNDSR 16 0 Q99081;Q99081-3;B4DGI9;H0YNQ5 Q99081 TCF12 Transcription factor 12 1 GFT(0.585)DS(0.415)PHYSDHLNDSR;GFT(0.567)DS(0.433)PHYSDHLNDSR;GFT(0.836)DS(0.164)PHYSDHLNDSR 124.45 0.00010308 174245000 7555.3 8310.7 8660.4 8944.9 8067.1 7363.04 7926.86 8508.31 8188.7 9021 TRUE FALSE 7661.09751 9218.090331 6473.97491 8371.21415 9165.975597 8668.771762 9430.940304 7785.475958 8975.261223 7182.515248 1.066631569 1.283406998 0.901352059 1.165498974 1.27615122 1.206927025 1.313041459 1.083948407 1.249598631 1 12.81027344 -4.968960445 14.13171694 1.168728949 0.786427761 0.04992573 0.126757143 2530475.047 35400685.03 0.03102093 22365652.07 1.07E-05 4.968960445 -0.382301188 GFTDS(ph)PHYSDHLNDSR ddPTM_K562_Paclitaxel_30min_R1 1 GFTDSPHYSDHLNDSR 16 0 Q99081;Q99081-3;B4DGI9;H0YNQ5 Q99081 TCF12 Transcription factor 12 1 GFT(0.05)DS(0.95)PHYSDHLNDSR 132.87 3.20E-07 30720000 974.18 1150.2 1288.5 1263.2 1160.9 1112.8 1229.8 1187.1 1109.2 1394.8 TRUE FALSE 987.8215256 1275.782726 963.202239 1182.184006 1319.034234 1310.139456 1463.14813 1086.248445 1215.743616 1110.538994 0.88949738 1.148795974 0.867328607 1.064513729 1.187742385 1.17973296 1.31751171 0.978127243 1.094732938 1 10.11704434 -6.519560886 16.18235184 1.136418999 0.983124422 0.268634553 0.115035068 1.943472826 9471.882817 0.033384482 0.04465565 3.02E-07 6.519560886 -0.153294577 GFTIPEAFR ddPTM_K562_Paclitaxel_30min_R1 2 GFTIPEAFR 9 0 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 0 ; 152.63 0.000696 83140000 5454.5 5824 6060.6 5951.7 5335.1 5558.7 6518.2 6811.9 5411.9 6545.6 FALSE TRUE 5530.879829 6459.884016 4530.526573 5569.984601 6061.830944 6544.457397 7754.994423 6233.186576 5931.737176 5211.603127 1.061262666 1.23951956 0.869315346 1.068766072 1.163141321 1.255747461 1.488024747 1.19602096 1.138178989 1 12.34751151 -6.944491719 3.172330575 1.243139537 1.059291435 0.199996224 0.141874762 0.361100306 7.426765405 0.047979568 0.053926174 1.14E-07 6.944491719 -0.183848102 GGAEQFMEETER ddPTM_K562_Paclitaxel_30min_R1 6 GGAEQFMEETER 12 0 Q99832-2;Q99832-4;Q99832-3;Q99832 Q99832-2 CCT7 T-complex protein 1 subunit eta 0 ;;;;; 196.11 3.82E-05 175132000 5415.49 5849.93 6017.38 6081.04 5757.43 5897.51 5577.18 6512.86 6089.36 6581.95 FALSE TRUE 5491.323568 6488.645141 4498.217997 5691.029312 6541.68944 6943.350593 6635.42079 5959.551891 6674.270236 5240.544977 1.047853533 1.238162284 0.858349278 1.085961353 1.24828419 1.32492911 1.266169992 1.137200791 1.273583237 1 12.35550113 -6.69019217 5.556007576 1.223780987 1.053172471 0.270005191 0.120534121 0.253896524 14.07705648 0.03540645 0.045559818 2.04E-07 6.69019217 -0.170608516 GGAPDPSPGATATPGAPAQPS(ph)SPDAR ddPTM_K562_Paclitaxel_30min_R1 2 GGAPDPSPGATATPGAPAQPSSPDAR 26 0 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 GGAPDPSPGATATPGAPAQPS(0.5)S(0.5)PDAR;GGAPDPSPGATATPGAPAQPS(0.5)S(0.5)PDAR 148.27 2.45E-26 162598000 3604.3 3682 3842.4 3676.3 3468.4 3695.9 3553.7 4039.3 2771.5 4001.3 TRUE FALSE 3654.77132 4084.013212 2872.338598 3440.518573 3940.8548 4351.315972 4227.996023 3696.136252 3037.714958 3185.832864 1.147194934 1.281929526 0.901597391 1.079943211 1.23699358 1.365833099 1.327124242 1.160178958 0.953507321 1 11.63745487 -8.711573418 5.607442917 0.97623484 1.191226841 0.310280798 0.12610216 0.238837531 16.29029815 0.103704331 0.035859978 1.94E-09 8.711573418 0.214992002 GGAPDPSPGATATPGAPAQPSS(ph)PDARR ddPTM_K562_Paclitaxel_30min_R1 2 GGAPDPSPGATATPGAPAQPSSPDARR 27 1 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 GGAPDPSPGATATPGAPAQPS(0.244)S(0.756)PDARR;GGAPDPSPGATATPGAPAQPS(0.274)S(0.725)PDARR 169.33 7.32E-36 44749000 3805.1 3888 3888.9 3826.3 4202.8 4227.9 3816.6 4146.2 4029 4326 TRUE FALSE 3858.38314 4312.504988 2907.099098 3580.898244 4775.292514 4977.658702 4540.779926 3793.95443 4416.003452 3444.358825 1.120203595 1.2520487 0.844017492 1.039641462 1.386409708 1.445162643 1.318323716 1.101498021 1.282097388 1 11.75001973 -6.745430613 24.98449668 1.273272942 1.061699931 0.267421935 0.153676857 317.5113427 495530.302 0.047041108 0.060534819 1.80E-07 6.745430613 -0.211573011 GGASS(ph)SCCEEEQTQGR ddPTM_K562_Paclitaxel_30min_R1 2 GGASSSCCEEEQTQGR 16 0 Q9UJK0 Q9UJK0 TSR3 Ribosome biogenesis protein TSR3 homolog 1 GGAS(0.048)S(0.914)S(0.038)CCEEEQTQGR;GGASS(0.981)S(0.018)CCEEEQTQGR 296.44 6.94E-177 16295900 6405.9 5469.7 6370.1 6375.7 5111.9 4396 5426.7 5671.7 8554.7 5794.4 TRUE FALSE 6495.602364 6066.900343 4761.889471 5966.791139 5808.227325 5175.568877 6456.387996 5189.853683 9376.417158 4613.498099 1.407956007 1.315032588 1.032164611 1.29333339 1.258963849 1.1218318 1.399456087 1.124928107 2.03238778 1 12.17164535 GGCPGGEATLS(ph)QPPPR ddPTM_K562_Paclitaxel_30min_R1 2 GGCPGGEATLSQPPPR 16 0 P20290 P20290 BTF3 Transcription factor BTF3 1 GGCPGGEATLS(1)QPPPR;GGCPGGEATLS(1)QPPPR 218.2 2.54E-23 30744000 1612.43 1476.11 1587.08 1452.66 966.07 1627.33 1751.05 2198.84 1392.65 2095.88 TRUE FALSE 1635.008995 1637.276682 1186.402025 1359.492889 1097.66509 1915.914127 2083.302596 2012.034817 1526.420255 1668.738506 0.97978742 0.981146343 0.710957422 0.814682999 0.657781364 1.148121243 1.248429631 1.205722053 0.914715068 1 10.70454218 -7.280849026 24.93560408 1.125319758 0.829991855 0.520216103 0.130975677 643.3605374 826523.5818 0.048162954 0.042538689 5.24E-08 7.280849026 -0.295327903 GGCVS(ph)PERGPTFNPK ddPTM_K562_Paclitaxel_30min_R1 2 GGCVSPERGPTFNPK 15 1 Q9ULD5 Q9ULD5 ZNF777 Zinc finger protein 777 1 GGCVS(1)PERGPTFNPK;GGCVS(1)PERGPTFNPK 179.55 3.93E-06 36787000 3523 3258.7 5806 4067 3148.1 2802 2662.9 4016 3825.2 4338.9 TRUE FALSE 3572.332869 3614.495886 4340.203492 3806.160823 3576.924518 3298.895358 3168.171374 3674.815733 4192.627551 3454.629798 1.03407111 1.046275896 1.256344021 1.101756496 1.035400239 0.954920078 0.917079849 1.063736478 1.213625713 1 11.7543154 -6.754355546 4.8546794 1.023861406 1.116641768 0.146075307 0.092587742 0.360150121 22.33479663 0.030570643 0.03761444 1.76E-07 6.754355546 0.092780362 GGDDYS(ph)EDEGDSSVSR ddPTM_K562_Paclitaxel_30min_R1 1 GGDDYSEDEGDSSVSR 16 0 A6NDA1;Q99871-3;Q99871;Q99871-2 A6NDA1 HAUS7 HAUS augmin-like complex subunit 7 1 GGDDYS(0.997)EDEGDS(0.003)SVSR 203.52 2.20E-14 13062000 2489.6 1997.6 2337.1 2127.6 1793.5 1541.6 1704.3 1989.9 1793.6 2434.9 TRUE FALSE 2524.462081 2215.704723 1747.0702 1991.145259 2037.805064 1814.981115 2027.682028 1820.845574 1965.883294 1938.666043 1.302164491 1.142901703 0.901171301 1.027069755 1.051137751 0.936201014 1.0459161 0.939226011 1.014039164 1 10.92084859 -5.505395543 3.713673388 0.991087257 1.285061773 0.805169482 0.048745967 0.087022938 2.501984647 0.012095959 0.049683773 3.12E-06 5.505395543 0.293974516 GGDLMAYDRR ddPTM_K562_Paclitaxel_30min_R1 4 GGDLMAYDRR 10 1 Q5T6W2;P61978-3;P61978;P61978-2 Q5T6W2 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 ;;; 154.85 0.00027362 283781000 11811.8 12167.9 12042.5 11729.8 10861 10725.5 13972.7 15168.5 14208.6 16596.1 FALSE TRUE 11977.20164 13496.43247 9002.221935 10977.50313 12340.45208 12627.51683 16623.94688 13879.84125 15573.39952 13213.80571 0.906415752 1.021388748 0.681273975 0.830760144 0.933905973 0.955630581 1.258074112 1.05040452 1.178570342 1 13.68975842 -7.569924331 5.273458202 1.126145702 0.875877322 0.557915129 0.103740862 0.147676235 9.34861624 0.040796391 0.031679655 2.69E-08 7.569924331 -0.25026838 GGDSIGET(ph)PT(ph)PGASK ddPTM_K562_Paclitaxel_30min_R1 1 GGDSIGETPTPGASK 15 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 GGDSIGET(1)PT(0.986)PGAS(0.014)K 114.63 0.014769 7749200 5067.9 4436.8 6990.9 4443.4 3984 3517.4 3983.3 5715.6 4693.5 6511.9 TRUE FALSE 5138.866236 4921.224828 5225.960833 4158.420212 4526.68825 4141.161503 4739.110381 5230.024104 5144.331646 5184.771206 0.991146192 0.94916914 1.007944348 0.802045075 0.873073868 0.798716344 0.914044264 1.008728042 0.992200319 1 12.34006461 -8.223065212 5.81102301 1.000539421 0.901065397 0.30525945 0.065691162 0.257360576 24.69155203 0.035385571 0.019628002 5.98E-09 8.223065212 -0.099474024 GGDSIGET(ph)PTPGASK ddPTM_K562_Paclitaxel_30min_R1 1 GGDSIGETPTPGASK 15 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 GGDSIGET(0.981)PT(0.018)PGAS(0.001)K 93.716 0.023456 6002500 2937 2420.2 4322.5 3325.3 2337.2 2331.8 2303.1 3261.1 2220.7 3785.6 TRUE FALSE 2978.127061 2684.445621 3231.231415 3112.030141 2655.566209 2745.31199 2740.101202 2984.0492 2434.008157 3014.092642 0.988067526 0.890631424 1.072041174 1.032493195 0.881049962 0.910825351 0.909096543 0.990032343 0.807542583 1 11.55750805 -6.763444216 24.99994076 0.915279729 0.993740898 0.255928447 0.066256288 77.70204973 968933.4514 0.019986138 0.023807677 1.72E-07 6.763444216 0.078461169 GGDVFGDTSFLSNHGGSSGST(ph)HRSPR ddPTM_K562_Paclitaxel_30min_R1 2 GGDVFGDTSFLSNHGGSSGSTHRSPR 26 1 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 GGDVFGDTSFLSNHGGS(0.004)S(0.014)GS(0.328)T(0.524)HRS(0.131)PR;GGDVFGDTSFLSNHGGS(0.084)S(0.084)GS(0.276)T(0.428)HRS(0.128)PR 123.36 2.48E-10 221660000 3613.2 3332 2914.2 3720.7 3211.8 3208.6 3251 3715.4 3247.6 3995.7 TRUE FALSE 3663.795948 3695.799028 2178.474168 3482.070955 3649.301536 3777.600159 3867.860279 3399.753579 3559.546491 3181.374147 1.151639442 1.161698957 0.684758871 1.094517902 1.14708342 1.187411472 1.215782898 1.068643115 1.118870754 1 11.63543434 -6.50631376 24.98859975 1.133037017 0.994605643 0.142524098 0.134399286 1303.457807 1966292.018 0.039115364 0.056363855 3.12E-07 6.50631376 -0.138431374 GGDVS(ph)PSPYSSSSWR ddPTM_K562_Paclitaxel_30min_R1 2 GGDVSPSPYSSSSWR 15 0 A0A2R8Y7W5;A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8YFE7 A0A2R8Y7W5 CDK13 Cyclin-dependent kinase 13 1 GGDVS(0.999)PS(0.001)PYSSSSWR;GGDVS(0.982)PS(0.018)PYSSSSWR 196.97 3.10E-09 379160000 3732 3438 4134.2 3967.4 3851.6 3120.9 3741 4132.3 2646.5 4433.4 TRUE FALSE 3784.259514 3813.372467 3090.470079 3712.948721 4376.253128 3674.347795 4450.835221 3781.235322 2900.70815 3529.870646 1.072067476 1.080315073 0.875519357 1.051865378 1.239777195 1.040929871 1.260906041 1.071210733 0.821760467 1 11.7853996 -8.673755359 7.800403296 0.912257604 1.088360389 0.295750656 0.108595466 0.285495911 21.51398611 0.077354305 0.028773597 2.12E-09 8.673755359 0.176102785 GGDVS(ph)PSPYSSSSWRR ddPTM_K562_Paclitaxel_30min_R1 1 GGDVSPSPYSSSSWRR 16 1 A0A2R8Y7W5;A0A2R8Y4Z0;Q14004-2;Q14004;A0A2R8YFE7 A0A2R8Y7W5 CDK13 Cyclin-dependent kinase 13 1 GGDVS(0.556)PS(0.008)PYS(0.044)S(0.193)S(0.193)S(0.006)WRR 110.22 0.002218 17323000 2081.1 2603.8 2453.8 2252.5 1940.7 2540.2 2057.7 2496.3 4044.8 2421.7 TRUE FALSE 2110.241821 2888.091689 1834.307842 2108.034732 2205.056196 2990.668804 2448.137833 2284.223734 4433.321113 1928.156211 1.094435092 1.497851509 0.951327404 1.09329043 1.143608689 1.551051096 1.269678162 1.184667363 2.299254121 1 10.91300622 -7.252283724 23.84062327 1.46051861 1.160222677 0.161799699 0.346839907 687.98485 1791459.8 0.112024864 0.110382355 5.59E-08 7.252283724 -0.300295933 GGFDS(ph)PFYR ddPTM_K562_Paclitaxel_30min_R1 3 GGFDSPFYR 9 0 A0A2R8YFV7;A0A2R8Y5N2;A0A2R8Y5S3;Q92574-2;Q92574;A0A2R8YEH9;A0A2R8Y6S1 A0A2R8YFV7 TSC1 Hamartin 1 GGFDS(1)PFYR;GGFDS(1)PFYR;GGFDS(0.998)PFY(0.002)R 93.556 0.014717 31197900 4182.9 3679.8 5011.1 4390.2 4253.7 3839.9 4239.9 4739.3 3409.24 4824.1 TRUE FALSE 4241.473505 4081.573008 3745.985829 4108.632222 4833.125956 4520.85235 5044.398891 4336.666883 3736.712735 3840.945772 1.104278414 1.062647913 0.975276937 1.069692848 1.258316634 1.177015407 1.31332208 1.129062252 0.972862664 1 11.90724588 -6.545480205 24.34267096 1.159052158 1.044518941 0.144409979 0.101751238 272.0941153 293054.028 0.030776124 0.0397345 2.85E-07 6.545480205 -0.114533217 GGGAAGAGGGGSGAGGGS(ph)GGSGGR ddPTM_K562_Paclitaxel_30min_R1 1 GGGAAGAGGGGSGAGGGSGGSGGR 24 0 C9JRT7;Q6PID8 C9JRT7 KLHDC10 Kelch domain-containing protein 10 1 GGGAAGAGGGGS(0.003)GAGGGS(0.975)GGS(0.022)GGR 52.966 0.027595 17559000 147.01 217.42 333.59 230.95 254.21 375.21 69.395 313.41 215.08 382.51 TRUE FALSE 149.0685936 241.1586509 249.3710787 216.1379007 288.8377058 441.7482253 82.56233898 286.7838643 235.739395 304.554252 0.489464825 0.791841353 0.818806755 0.709686039 0.948394921 1.45047466 0.271092386 0.941651159 0.774047295 1 8.250555437 -4.889081836 1.229102773 0.867366402 7.08E-10 0.143408605 0.275614354 6.994614877 4.923222392 0.08152006 9.583834511 1.29E-05 4.889081836 -0.867366401 GGGAPWPGGAQT(ph)YSPSSTCR ddPTM_K562_Paclitaxel_30min_R1 2 GGGAPWPGGAQTYSPSSTCR 20 0 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 GGGAPWPGGAQT(0.881)YS(0.118)PS(0.001)STCR;GGGAPWPGGAQT(0.923)YS(0.036)PS(0.036)S(0.004)TCR 273.43 8.36E-120 44933000 3817.9 3989.4 3577.9 4049.9 3604.2 3540.3 3298.5 4189.7 2951.8 4192.8 TRUE FALSE 3871.362379 4424.976183 2674.614894 3790.157541 4095.15306 4168.122497 3924.373156 3833.758834 3235.333579 3338.305059 1.159679032 1.325515825 0.80118948 1.135353862 1.226716249 1.248574478 1.17555858 1.148414769 0.969154563 1 11.70490008 -8.75719458 23.90831977 0.984577208 1.152530541 0.210505719 0.130177379 93.15816138 524746.266 0.098457257 0.034142916 1.75E-09 8.75719458 0.167953333 GGGAPWPGGAQTYS(ph)PSSTCR ddPTM_K562_Paclitaxel_30min_R1 2 GGGAPWPGGAQTYSPSSTCR 20 0 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 GGGAPWPGGAQT(0.389)Y(0.007)S(0.484)PS(0.083)S(0.028)T(0.009)CR;GGGAPWPGGAQT(0.022)YS(0.737)PS(0.183)S(0.055)T(0.003)CR 201.61 1.16E-19 128522000 2765.9 3389.7 3237.1 2547 2633.6 2954.9 2745.3 2938.3 2407.28 3045 TRUE FALSE 2804.631134 3759.798909 2419.854069 2383.64682 2992.340907 3478.910026 3266.206344 2688.673075 2638.51 2424.427329 1.156822108 1.550798766 0.998113674 0.983179323 1.234246485 1.434940938 1.347207361 1.108993057 1.088302367 1 11.24342829 -8.45464727 5.543675905 1.059794386 1.242900054 0.195711617 0.167910114 0.39717051 23.12682305 0.10451447 0.047624268 3.51E-09 8.45464727 0.183105668 GGGESLQEAS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 GGGESLQEASPR 12 0 P98175-5 P98175-5 RBM10 RNA-binding protein 10 1 GGGESLQEAS(1)PR 83.877 0.026676 19339000 881.62 866.52 1011.1 1118.3 1001.5 851.5 944.32 1260.2 751.56 1067.7 TRUE FALSE 893.9654 961.129584 755.8352999 1046.577243 1137.921256 1002.501569 1123.49979 1153.138144 823.7506961 850.1021539 1.051597618 1.13060481 0.889111146 1.231119388 1.338570018 1.179271885 1.321605627 1.356470089 0.96900201 1 9.731492405 -6.294717866 24.22422391 1.224334821 1.034454542 0.24206944 0.137197721 522.6978432 380483.2867 0.03732337 0.05536417 5.07E-07 6.294717866 -0.189880279 GGGGEGGGEAS(ph)PDRQGSLPSR ddPTM_K562_Paclitaxel_30min_R1 1 GGGGEGGGEASPDRQGSLPSR 21 1 A0A0D9SGA5;A0A0D9SGD0 A0A0D9SGA5 SLC12A5 1 GGGGEGGGEAS(0.94)PDRQGS(0.052)LPS(0.007)R 54.656 0.028115 10188000 1006.8 894.42 1107.7 906.35 932 779.81 906.86 1003 1068.3 1326.5 TRUE FALSE 1020.898306 992.0758003 828.0474351 848.2207677 1058.954179 918.0983544 1078.931951 917.7888895 1170.914988 1056.158572 0.96661461 0.939324668 0.784018098 0.803118765 1.002646958 0.869280787 1.021562462 0.868987777 1.108654533 1 10.04461074 -8.061199409 0.860138489 1.023132316 0.884853111 0.265971681 0.084081144 0.877489982 1.195934638 0.073401223 0.03503261 8.69E-09 8.061199409 -0.138279206 GGGGGQDNGLEGLGNDS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 GGGGGQDNGLEGLGNDSR 18 0 P08621;P08621-4;P08621-2 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 1 GGGGGQDNGLEGLGNDS(1)R;GGGGGQDNGLEGLGNDS(1)R 256.66 2.93E-80 115574000 3464.1 3121.7 3781.2 3630.1 3404.8 2999.6 3677.9 4238.4 2391.7 4411.3 TRUE FALSE 3512.608088 3462.537763 2826.589295 3397.281634 3868.591404 3531.536944 4375.762325 3878.321465 2621.433471 3512.274639 1.000094938 0.985839127 0.804774565 0.967259677 1.101449004 1.005484282 1.245848567 1.104219306 0.746363466 1 11.77818994 -6.568374223 7.544600442 1.047459051 0.927646345 0.114899052 0.128028951 0.427590492 59.3623814 0.038678191 0.0502001 2.70E-07 6.568374223 -0.119812706 GGGGNFGPGPGS(ph)NFR ddPTM_K562_Paclitaxel_30min_R1 1 GGGGNFGPGPGSNFR 15 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 GGGGNFGPGPGS(1)NFR 166.3 2.92E-05 20751000 1249.6 1303.8 1169.6 960.79 1071.1 1074 1300 1523.2 1028.2 1613 TRUE FALSE 1267.098255 1446.153293 874.3200146 899.1692297 1217.001954 1264.45882 1546.668214 1393.794652 1126.963204 1284.269715 0.986629398 1.126051075 0.680791585 0.700140492 0.947621781 0.984574195 1.204317283 1.085281882 0.877512871 1 10.32673251 -7.248748399 3.136522738 1.050739165 0.875134892 0.202574455 0.143520825 0.420469774 8.512862673 0.056771703 0.053317603 5.64E-08 7.248748399 -0.175604273 GGGGNFGPGPGS(ph)NFRGGSDGYGSGR ddPTM_K562_Paclitaxel_30min_R1 1 GGGGNFGPGPGSNFRGGSDGYGSGR 25 1 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 GGGGNFGPGPGS(0.983)NFRGGS(0.006)DGY(0.007)GS(0.004)GR 56.428 0.0088213 26316000 669.25 853.62 842.27 801.69 610.42 770.55 787 718.36 1193.4 974.9 TRUE FALSE 678.6215648 946.8211184 629.6285214 750.2731916 693.5695385 907.1962234 936.3291416 657.3308341 1308.031402 776.2148449 0.874270274 1.219792593 0.811152383 0.966579287 0.893527795 1.168743718 1.206275747 0.846841359 1.685140926 1 9.600312214 -7.274887903 22.71549512 1.173382715 0.960749525 0.20561109 0.223876036 407.9180955 688997.933 0.07451556 0.066190089 5.31E-08 7.274887903 -0.212633189 GGGGNFGPGPGSNFR ddPTM_K562_Paclitaxel_30min_R1 1 GGGGNFGPGPGSNFR 15 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 116.71 0.0078332 13636000 622.05 493.13 805.24 619.38 569.87 485.43 664.9 679.57 692.8 693.79 FALSE TRUE 630.7606192 546.9716011 601.9472029 579.655739 647.495942 571.5141947 791.061304 621.8362868 759.3465355 552.3952172 1.141864737 0.990181638 1.089703865 1.04934967 1.172160659 1.034611048 1.432056758 1.125709035 1.374643574 1 9.109557018 -7.714329443 24.99976693 1.243579885 1.078864014 0.27288876 0.122233795 140.0744839 74332.7864 0.042829504 0.033175494 1.93E-08 7.714329443 -0.164715872 GGGLGS(ph)PGEGGALPR ddPTM_K562_Paclitaxel_30min_R1 1 GGGLGSPGEGGALPR 15 0 Q7Z7A3 Q7Z7A3 CTU1 Cytoplasmic tRNA 2-thiolation protein 1 1 GGGLGS(1)PGEGGALPR 135.14 1.45E-05 20997000 2240.1 2166.4 1968.8 2443.2 2247.2 2153.2 1958.5 2416.5 2199 2158.4 TRUE FALSE 2271.468311 2402.934878 1471.75209 2286.504087 2553.306685 2535.039788 2330.115151 2211.203242 2410.223775 1718.516895 1.321760826 1.39826084 0.856408275 1.330510101 1.485761759 1.475132304 1.355887252 1.286692757 1.402502229 1 10.74694832 GGGLRLPLLPPES(ph)PGPLR ddPTM_K562_Paclitaxel_30min_R1 2 GGGLRLPLLPPESPGPLR 18 1 A0A0G2JMS7;A0A0G2JNZ2;A0A0G2JPP5;A0A669KB89;Q14160-2;Q14160;Q14160-3;A0A669KAX5 A0A0G2JMS7 SCRIB Protein scribble homolog 1 GGGLRLPLLPPES(1)PGPLR;GGGLRLPLLPPES(1)PGPLR 104.42 0.00069063 42390000 3612.1 3573.3 3200.7 3251.3 2925.4 3191.8 3918.8 4409.6 4636.3 4702 TRUE FALSE 3662.680544 3963.444978 2392.643699 3042.77617 3323.889007 3757.820915 4662.371842 4034.976956 5081.637331 3743.729819 0.978350661 1.05868884 0.639106937 0.812765963 0.887854938 1.003763919 1.245381496 1.077795982 1.357372881 1 11.87026061 -7.51547696 3.004580703 1.176428205 0.869654135 0.50867662 0.135811657 0.217230699 4.00567009 0.055683444 0.044387668 3.05E-08 7.51547696 -0.30677407 GGGPGKS(ph)PTQGST ddPTM_K562_Paclitaxel_30min_R1 1 GGGPGKSPTQGST 13 1 Q6P582 Q6P582 MZT2A Mitotic-spindle organizing protein 2A 1 GGGPGKS(0.597)PT(0.091)QGS(0.156)T(0.156) 106.54 0.016509 14280000 3103.8 3107.6 5354 3300.7 2819.1 2789.6 2649.3 3815.6 3667.7 3795.2 TRUE FALSE 3147.262776 3446.898277 4002.316483 3089.007875 3203.109148 3284.296392 3151.990845 3491.440964 4019.998973 3021.736157 1.041541224 1.140701272 1.324508916 1.022262605 1.060022776 1.086890523 1.04310591 1.155442032 1.330360681 1 11.56116198 -10.70730482 7.52873496 1.000006006 1.130807113 0.124888657 0.106031924 0 0 0.105355683 0.025552507 1.96E-11 10.70730482 0.130801107 GGGPGKSPT(ph)RGST ddPTM_K562_Paclitaxel_30min_R1 1 GGGPGKSPTRGST 13 2 H7BZ50;H7C173;A0A494C0V9;B8ZZ87;Q6NZ67 H7BZ50 MZT2B Mitotic-spindle organizing protein 2B 1 GGGPGKS(0.051)PT(0.943)RGS(0.004)T(0.003) 98.676 0.018856 7888100 1953.6 1431.9 2430.9 1519.1 1237.5 1490.4 1111 1494.5 1864.1 1594.9 TRUE FALSE 1980.956427 1588.239684 1817.18923 1421.671725 1406.068451 1754.701514 1321.80645 1367.532897 2043.155134 1269.858505 1.559982014 1.250721776 1.431017096 1.119551289 1.107263877 1.381808688 1.040908452 1.07691754 1.608962831 1 10.31045204 -2.000002398 0.732677669 1.198728476 56.13259897 0.244300507 0.184009847 502.7461043 2.328661217 0.067490418 45474.38514 0.009999945 2.000002398 54.93387049 GGGPQAQSHGEARLS(ph)DPPGR ddPTM_K562_Paclitaxel_30min_R1 2 GGGPQAQSHGEARLSDPPGR 20 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 GGGPQAQSHGEARLS(1)DPPGR;GGGPQAQSHGEARLS(1)DPPGR 89.201 0.0007953 109089000 9458.5 9189.4 10350.8 9052 9814.1 9530.9 9353.4 9999.2 10520.3 9691.7 TRUE FALSE 9590.948182 10192.72977 7737.612523 8471.445235 11150.94657 11221.07129 11128.15882 9149.705547 11530.82182 7716.52622 1.242910075 1.320896149 1.002732616 1.097831459 1.445073373 1.454160975 1.442120263 1.185728563 1.494302163 1 12.91373581 -6.757782657 24.99961578 1.357308294 1.165481395 0.205293101 0.161667885 137.5915458 940653.9598 0.04764556 0.059105779 1.75E-07 6.757782657 -0.191826898 GGGPVTLQDYRLPDS(ph)DDDEDEETAIQR ddPTM_K562_Paclitaxel_30min_R1 1 GGGPVTLQDYRLPDSDDDEDEETAIQR 27 1 Q96K21-3 Q96K21-3 ZFYVE19 Abscission/NoCut checkpoint regulator 1 GGGPVTLQDY(0.006)RLPDS(0.994)DDDEDEETAIQR 135.68 1.08E-18 82070000 596.44 583.44 571.13 506.32 680.14 529.76 481.07 627.34 548.88 760.29 TRUE FALSE 604.7920002 647.1419523 426.9411679 473.8469014 772.7865829 623.7054978 572.3505211 574.0435513 601.6023765 605.3424807 0.99909063 1.069050947 0.705288628 0.782774903 1.276610526 1.030334922 0.945498688 0.948295501 0.993821507 1 9.241607787 GGGQSVQFTDIETLKQES(ph)PNGSR ddPTM_K562_Paclitaxel_30min_R1 2 GGGQSVQFTDIETLKQESPNGSR 23 1 Q02241-2;A0A2U3TZL8;Q02241-3;Q02241 Q02241-2 KIF23 Kinesin-like protein KIF23 1 GGGQSVQFTDIETLKQES(0.987)PNGS(0.013)R;GGGQSVQFT(0.002)DIET(0.072)LKQES(0.904)PNGS(0.022)R 129.8 3.30E-09 169864000 4399.1 3327.7 5915.4 4935 3537.4 3023.29 3154.9 4220.2 3830.2 5511.1 TRUE FALSE 4460.700972 3691.02954 4421.984109 4618.491188 4019.253769 3559.428032 3753.525805 3861.667668 4198.107824 4387.934795 1.01658324 0.841176935 1.007759759 1.052543259 0.915978463 0.811185261 0.855419686 0.880064962 0.956738881 1 12.09932637 -6.987834719 24.77996303 0.887381924 0.973228017 0.204045622 0.071536554 305.3094558 621893.1359 0.022495988 0.025490156 1.03E-07 6.987834719 0.085846093 GGGSAAAAAAAAASGGGVS(ph)PDNSIEHSDYR ddPTM_K562_Paclitaxel_30min_R1 4 GGGSAAAAAAAAASGGGVSPDNSIEHSDYR 30 0 P40425 P40425 PBX2 Pre-B-cell leukemia transcription factor 2 1 GGGSAAAAAAAAASGGGVS(1)PDNSIEHSDYR;GGGSAAAAAAAAASGGGVS(1)PDNSIEHSDYR;GGGSAAAAAAAAASGGGVS(1)PDNSIEHSDYR;GGGSAAAAAAAAASGGGVS(1)PDNSIEHSDYR 227.96 4.76E-66 537120000 10655.3 10408.3 11104.2 11146.2 10103.4 10083.8 10398 10785.7 9778.8 12007.8 TRUE FALSE 10804.50707 11544.71339 8300.807375 10431.33262 11479.65413 11872.02035 12370.96622 9869.387463 10718.09743 9560.603769 1.130107192 1.207529741 0.868230457 1.091074672 1.200724809 1.241764708 1.293952403 1.03229751 1.121069097 1 13.22288601 -3.309583463 1.748539696 1.123085102 20.0670064 0 0.120736442 23948.00561 100.7153841 0.034265267 1817341.485 0.000490249 3.309583463 18.94392129 GGGSCSGSAGGGGS(ph)GSLPSQR ddPTM_K562_Paclitaxel_30min_R1 3 GGGSCSGSAGGGGSGSLPSQR 21 0 O15234 O15234 CASC3 Protein CASC3 1 GGGSCSGSAGGGGS(0.978)GS(0.022)LPSQR;GGGSCSGS(0.008)AGGGGS(0.968)GS(0.024)LPSQR;GGGSCSGSAGGGGS(0.948)GS(0.051)LPSQR 265.96 1.58E-109 25917400 2022.13 1850.41 2300.94 2394.51 2403.1 2266.07 1917.4 2020.26 1844.59 1893.38 TRUE FALSE 2050.446059 2052.444021 1720.039239 2240.936846 2730.442905 2667.925697 2281.216641 1848.626303 2021.771111 1507.508117 1.3601559 1.361481241 1.140981744 1.486517267 1.811229322 1.769758761 1.513236722 1.226279502 1.341134478 1 10.55795005 -8.94149316 1.306932143 1.019499854 1.487409207 0.354480387 0.195144379 0.55725736 2.137282712 0.21290226 0.065675966 1.14E-09 8.94149316 0.467909354 GGGT(ph)PDANSLAPPGK ddPTM_K562_Paclitaxel_30min_R1 1 GGGTPDANSLAPPGK 15 0 Q5T171;Q9BRQ0 Q5T171 PYGO2 Pygopus homolog 2 1 GGGT(0.989)PDANS(0.011)LAPPGK 169.98 1.97E-05 47811000 4229.3 3216.9 5891.4 3780.6 3216 3145.9 3106.8 4425 3596.8 4964.6 TRUE FALSE 4288.523249 3568.132021 4404.043206 3538.129237 3654.073647 3703.781194 3696.299081 4049.06863 3942.288711 3952.811795 1.084929784 0.902681991 1.11415454 0.895091753 0.924423888 0.936999125 0.935106267 1.024351484 0.997337823 1 11.94866355 -5.237493885 23.88795374 0.969392742 1.084930032 0.229394225 0.063176138 5892.064357 5877743.806 0.015532705 0.869841223 5.79E-06 5.237493885 0.11553729 GGIDNPAITS(ph)DQELDDKK ddPTM_K562_Paclitaxel_30min_R1 1 GGIDNPAITSDQELDDKK 18 1 A0A0A0MSK6;Q13017-2;Q13017;H0YK04 A0A0A0MSK6 ARHGAP5 Rho GTPase-activating protein 5 1 GGIDNPAIT(0.33)S(0.67)DQELDDKK 66.536 0.019135 8067600 784.77 478.61 1622.1 1006.7 598.7 428.46 427.42 946.42 652.51 1088 TRUE FALSE 795.7592012 530.8662584 1212.580793 942.1347678 680.2530761 504.4413651 508.5207137 866.0157136 715.186501 866.2650028 0.918609431 0.612822008 1.399780424 1.087582627 0.785271336 0.582317609 0.587026732 0.999712225 0.825597824 1 9.758664623 GGLHDFRS(ph)PPPGMGLNQNR ddPTM_K562_Paclitaxel_30min_R1 2 GGLHDFRSPPPGMGLNQNR 19 1 P23246;P23246-2 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 1 GGLHDFRS(1)PPPGMGLNQNR;GGLHDFRS(1)PPPGMGLNQNR 123.58 2.15E-06 26171000 2358.12 2426.8 2377.24 2314.65 2219.88 2317.14 2202.18 2689.7 1733.47 2751.2 TRUE FALSE 2391.140955 2691.766231 1777.076361 2166.198709 2522.265239 2728.052245 2620.032159 2461.193196 1899.977539 2190.50393 1.091594004 1.22883424 0.811263717 0.988904279 1.151454332 1.245399384 1.196086491 1.12357397 0.867370066 1 11.09704709 -8.75156724 24.96022607 0.933685026 1.104442474 0.232243582 0.1243303 279.9448383 707811.1955 0.09361851 0.034431302 1.77E-09 8.75156724 0.170757447 GGLS(ph)PANDTGAK ddPTM_K562_Paclitaxel_30min_R1 4 GGLSPANDTGAK 12 0 P30419;B7Z8J4;K7EN42 P30419 NMT1 Glycylpeptide N-tetradecanoyltransferase 1 1 GGLS(1)PANDTGAK;GGLS(1)PANDTGAK;GGLS(1)PANDTGAK;GGLS(1)PANDTGAK 181.71 4.15E-54 926203000 17935.8 15551.6 28424.8 19509.4 14501.8 14300.7 13600.9 20009.3 11911.8 21871.5 TRUE FALSE 18186.95654 17249.57628 21248.60769 18258.1544 16477.19068 16836.72835 16181.59977 18309.38507 13055.98161 17414.07629 1.0443825 0.990553618 1.220197232 1.048471024 0.946199523 0.966845905 0.929225272 1.051412935 0.749737247 1 14.08796633 -6.698319981 4.33332085 0.943385568 1.083786219 0.351903371 0.090685377 0.242962791 9.045136155 0.026854356 0.034405346 2.00E-07 6.698319981 0.140400651 GGLVS(ph)DAYGEDDFSR ddPTM_K562_Paclitaxel_30min_R1 1 GGLVSDAYGEDDFSR 15 0 J3KS14;F5H478;J3KRU5;X6R3T8;J3QLH3;J3QQJ0;Q9UHR5-2;Q9UHR5 J3KS14 SAP30BP SAP30-binding protein 1 GGLVS(1)DAYGEDDFSR 242.01 1.75E-46 28727000 2051.2 1648.7 1375.9 1353.6 1329 1433.1 1605.3 1929 1727.3 2393.3 TRUE FALSE 2079.923128 1828.710642 1028.537028 1266.786154 1510.0323 1687.240163 1909.897295 1765.11941 1893.214883 1905.544146 1.091511384 0.959678969 0.539760273 0.664789717 0.79244152 0.885437457 1.002284465 0.926307277 0.993529794 1 10.89598732 -7.502394217 3.210874302 0.973862876 0.795759875 0.239231158 0.141970236 0.40878621 8.663291233 0.062243041 0.050288668 3.14E-08 7.502394217 -0.178103002 GGNFGFGDS(ph)RGGGGNFGPGPGSNFR ddPTM_K562_Paclitaxel_30min_R1 2 GGNFGFGDSRGGGGNFGPGPGSNFR 25 1 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 GGNFGFGDS(1)RGGGGNFGPGPGSNFR;GGNFGFGDS(1)RGGGGNFGPGPGSNFR 94.456 4.95E-05 58691000 576.65 694.38 969.1 695.68 836.39 848.75 744.48 893.08 843.69 975.53 TRUE FALSE 584.7248791 770.1947566 724.4387193 651.0621985 950.3204782 999.2638955 885.7411936 817.2072796 924.7301942 776.7164505 0.752816396 0.991603507 0.932693931 0.838223779 1.223510172 1.286523409 1.140366208 1.052130773 1.190563421 1 9.601244212 -6.759736792 24.99999945 1.15791513 0.890736421 0.653886506 0.095947055 29.02792821 426226.9142 0.029336112 0.03591701 1.74E-07 6.759736792 -0.26717871 GGNFGFGDSR ddPTM_K562_Paclitaxel_30min_R1 2 GGNFGFGDSR 10 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ; 125.71 0.011011 259450000 6379.7 6856.9 7281.1 7719 6936.7 6985.2 7230.8 7616.9 7053.1 7412.3 FALSE TRUE 6469.035483 7605.559531 5442.896253 7223.937889 7881.595979 8223.927143 8602.806553 6969.796802 7730.581769 5901.669191 1.09613658 1.288713292 0.922263868 1.224049952 1.335485898 1.393491718 1.457690405 1.180987374 1.309897508 1 12.52690734 -6.516040541 23.18955671 1.301107514 1.113030685 0.223911723 0.143857058 161.279304 546927.8164 0.040705634 0.054795666 3.05E-07 6.516040541 -0.188076829 GGNLPPVS(ph)PNDSGAK ddPTM_K562_Paclitaxel_30min_R1 1 GGNLPPVSPNDSGAK 15 0 Q9UK61-2;Q9UK61-3;Q9UK61;A0A087X0F1;Q9UK61-4 Q9UK61-2 FAM208A Protein FAM208A 1 GGNLPPVS(0.988)PNDS(0.012)GAK 89.466 0.01348 29101000 4330.8 4347.6 7034.5 4828.5 4370.4 3928.3 3777.3 5103.3 4340.1 6192.3 TRUE FALSE 4391.444562 4822.285671 5258.553473 4518.821622 4965.722471 4624.928849 4494.022956 4669.742811 4756.985997 4930.305861 0.890704286 0.97809057 1.066577535 0.916539815 1.007183451 0.938061244 0.911509972 0.947150733 0.964846022 1 12.26746143 -7.308588906 24.96867287 0.946460284 0.974360895 0.029686649 0.049430687 1238.729775 655982.179 0.017390647 0.015337129 4.91E-08 7.308588906 0.027900611 GGPAS(ph)PGGLQGLETR ddPTM_K562_Paclitaxel_30min_R1 4 GGPASPGGLQGLETR 15 0 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 GGPAS(1)PGGLQGLETR;GGPAS(1)PGGLQGLETR;GGPAS(1)PGGLQGLETR;GGPAS(1)PGGLQGLETR 170.35 3.97E-06 488245000 4800.75 4926.3 5103.08 4939.23 5146.52 4720.91 5019.46 5999 4574.98 5853.5 TRUE FALSE 4867.975312 5464.170094 3814.74434 4622.449895 5847.563155 5558.097104 5971.876332 5489.347505 5014.427271 4660.553487 1.044505835 1.172429435 0.818517447 0.991824235 1.254692854 1.192583052 1.281366333 1.177831672 1.075929562 1 12.18628558 -6.748678408 24.96591324 1.179949573 1.005198361 0.317211601 0.111255555 255.4271309 499722.5051 0.033369527 0.042791843 1.78E-07 6.748678408 -0.174751212 GGPAS(ph)PGGLQGLETRR ddPTM_K562_Paclitaxel_30min_R1 3 GGPASPGGLQGLETRR 16 1 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 GGPAS(1)PGGLQGLETRR;GGPAS(1)PGGLQGLETRR;GGPAS(1)PGGLQGLETRR 95.554 0.0036991 77899000 648.04 1059.85 1059.6 987.18 869.83 772.14 664.5 826.76 945.05 1282.4 TRUE FALSE 657.1145594 1175.568007 792.090875 923.8666933 988.3155723 909.0681876 790.5854061 756.5215775 1035.826275 1021.046176 0.643569874 1.151336771 0.775764009 0.904823616 0.967944051 0.890330143 0.774289571 0.740927879 1.014475446 1 9.995832397 -7.542827239 24.90019764 0.856759029 0.901025706 0 0.146537581 1281.227065 1599243.946 0.052917509 0.040994161 2.87E-08 7.542827239 0.044266678 GGPASVPS(ph)SSPGTSVK ddPTM_K562_Paclitaxel_30min_R1 2 GGPASVPSSSPGTSVK 16 0 O43237-2;O43237;J3KRZ2;J3KRI4 O43237-2 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 GGPASVPS(0.469)S(0.302)S(0.196)PGT(0.029)S(0.005)VK;GGPASVPS(0.327)S(0.327)S(0.327)PGT(0.017)S(0.002)VK 153.14 2.54E-08 10781700 4458.8 4390.1 7271.9 4848.9 3453.2 4060.4 3531.3 4584.8 3108.9 5426.1 TRUE FALSE 4521.236957 4869.425964 5436.018907 4537.913257 3923.584303 4780.454929 4201.34574 4195.292623 3407.523736 4320.257842 1.046520167 1.127114664 1.25826261 1.050380191 0.908182902 1.106520746 0.972475693 0.971074592 0.788731567 1 12.0769017 -7.129811233 0.738441446 0.920427358 1.140915242 0.407876204 0.09371104 0.712648817 0.861980831 0.06619 0.075431898 7.42E-08 7.129811233 0.220487884 GGPASVPSSSPGT(ph)SVK ddPTM_K562_Paclitaxel_30min_R1 1 GGPASVPSSSPGTSVK 16 0 O43237-2;O43237;J3KRZ2;J3KRI4 O43237-2 DYNC1LI2 Cytoplasmic dynein 1 light intermediate chain 2 1 GGPAS(0.003)VPS(0.162)S(0.122)S(0.122)PGT(0.477)S(0.114)VK 90.913 0.023653 12711000 2698.2 2765.9 4360.7 3097.5 2686.5 2827.9 2487.2 3361.7 1628.4 3507.4 TRUE FALSE 2735.983125 3067.890316 3259.787353 2898.840214 3052.446783 3329.388359 2959.133216 3076.102602 1784.815096 2792.589955 0.979729631 1.09858245 1.167298961 1.038047211 1.093052268 1.192222422 1.059637564 1.101523192 0.639125373 1 11.44738804 -8.735616331 24.99010856 0.819562723 1.094637483 0.54731774 0.09880008 127.9290507 123803.2387 0.061730787 0.023314785 1.84E-09 8.735616331 0.27507476 GGPGAAPGGAS(ph)PASSSSAASSPS(ph)SGR ddPTM_K562_Paclitaxel_30min_R1 1 GGPGAAPGGASPASSSSAASSPSSGR 26 0 Q9BXK1 Q9BXK1 KLF16 Krueppel-like factor 16 2 GGPGAAPGGAS(0.914)PAS(0.084)S(0.002)SSAAS(0.063)S(0.1)PS(0.678)S(0.16)GR 176.77 1.23E-27 3031400 1015.5 1074.7 1452.2 1344.2 1176.8 871.91 930.6 1179 654.51 1146.4 TRUE FALSE 1029.720133 1192.03938 1085.574149 1257.989028 1337.100083 1026.530996 1107.176492 1078.836591 717.3786099 912.7630507 1.128135207 1.305968049 1.189327448 1.378220807 1.464892868 1.12464127 1.212994425 1.18194595 0.785941772 1 9.834096581 -8.635977981 4.963049927 0.897402466 1.260190149 0.62162201 0.111888606 0.135235576 5.175162485 0.083981098 0.029495325 2.31E-09 8.635977981 0.362787682 GGPGAAPGGASPASSSSAASS(ph)PSSGR ddPTM_K562_Paclitaxel_30min_R1 4 GGPGAAPGGASPASSSSAASSPSSGR 26 0 Q9BXK1 Q9BXK1 KLF16 Krueppel-like factor 16 1 GGPGAAPGGASPASSSSAAS(0.42)S(0.572)PS(0.006)S(0.002)GR;GGPGAAPGGASPASSSSAAS(0.127)S(0.873)PSSGR;GGPGAAPGGASPASSSSAAS(0.236)S(0.762)PS(0.001)SGR;GGPGAAPGGASPASSSSAAS(0.091)S(0.907)PS(0.001)SGR 330.73 0 121181300 9230.1 9466.6 10057.1 9873.3 9069.7 8068.9 8868.3 9624.4 6285.1 9421.2 TRUE FALSE 9359.349877 10500.1954 7518.06072 9240.070729 10305.14669 9499.806122 10551.01363 8806.747146 6888.811938 7501.154269 1.24772129 1.399810619 1.002253847 1.23181985 1.373808126 1.266445907 1.40658534 1.174052263 0.918366919 1 12.8728969 -8.623269375 4.395303946 0.963316062 1.272758226 0.555697633 0.111450448 0.164808635 5.489960801 0.085723742 0.029463418 2.38E-09 8.623269375 0.309442163 GGPGSAVS(ph)PYPTFNPSSDVAALHK ddPTM_K562_Paclitaxel_30min_R1 3 GGPGSAVSPYPTFNPSSDVAALHK 24 0 P04083;Q5T3N0;Q5T3N1 P04083 ANXA1 Annexin A1;Annexin 1 GGPGS(0.056)AVS(0.814)PY(0.103)PT(0.028)FNPSSDVAALHK;GGPGS(0.036)AVS(0.961)PY(0.003)PTFNPSSDVAALHK;GGPGS(0.014)AVS(0.985)PY(0.001)PTFNPSSDVAALHK 110.75 1.27E-06 105797200 7509.68 6944.97 10633.5 8512.25 6318.48 6433.22 6672.98 8216.43 7368.71 9884 TRUE FALSE 7614.838689 7703.245311 7948.941412 7966.312384 7179.163949 7574.06124 7939.14312 7518.392986 8076.50752 7869.635375 0.967622809 0.9788567 1.010077473 1.012284814 0.912261319 0.962441191 1.008832397 0.955367387 1.026287386 1 12.94208108 -8.769670513 24.99967967 1.013143698 0.976932872 0.202870485 0.029426667 345.1926436 1048380.593 0.027745831 0.007627444 1.70E-09 8.769670513 -0.036210827 GGPPPGNAAGDTGQPAEDS(ph)DHGGK ddPTM_K562_Paclitaxel_30min_R1 1 GGPPPGNAAGDTGQPAEDSDHGGK 24 0 I3L0Q8;H0YF92;Q9HBR0-3;Q9HBR0-2;Q9HBR0 I3L0Q8 SLC38A10 Putative sodium-coupled neutral amino acid transporter 10 1 GGPPPGNAAGDT(0.001)GQPAEDS(0.999)DHGGK 56.986 0.010846 35000000 538.72 625.52 581.32 568.01 677.85 560.03 634.86 618.41 521.55 600.67 TRUE FALSE 546.2637421 693.816389 434.5585763 531.5803809 770.1846461 659.3434573 755.3213708 565.8722105 571.6472078 478.2531243 1.142206322 1.450730489 0.908637193 1.111504251 1.610412158 1.378649556 1.579333898 1.183206511 1.195281701 1 8.901630583 -5.013587069 16.95692096 1.282881506 1.059466015 0.024527771 0.223509484 14101564.6 595271866.6 0.057430057 47104247.13 9.69E-06 5.013587069 -0.223415491 GGQVSLTVHGTQQVHS(ph)PPEQSPVQANSSSSK ddPTM_K562_Paclitaxel_30min_R1 1 GGQVSLTVHGTQQVHSPPEQSPVQANSSSSK 31 0 P22670 P22670 RFX1 MHC class II regulatory factor RFX1 1 GGQVS(0.11)LT(0.11)VHGT(0.081)QQVHS(0.52)PPEQS(0.178)PVQANSSSSK 48.163 0.0076134 14651000 1351.8 1345.6 2471.9 1802.5 1393 1313.7 1386.4 1974.8 1722.3 1804.4 TRUE FALSE 1370.729371 1492.517159 1847.838273 1686.895718 1582.750184 1546.66625 1649.462163 1807.028414 1887.73461 1436.66229 0.954106877 1.038878218 1.286202253 1.174176931 1.101685619 1.076569115 1.148121013 1.257796231 1.31397241 1 10.48850526 -8.04966936 5.922007179 1.213311867 1.113242061 0.09380878 0.111173339 0.451369684 37.44009986 0.053722152 0.031309091 8.92E-09 8.04966936 -0.100069806 GGRS(ph)PDEVTLTSIVPTR ddPTM_K562_Paclitaxel_30min_R1 2 GGRSPDEVTLTSIVPTR 17 1 H0YDM6;A0A0C4DGG1;Q9UKS6 H0YDM6 PACSIN3 Protein kinase C and casein kinase substrate in neurons protein 3 1 GGRS(1)PDEVTLTSIVPTR;GGRS(1)PDEVTLTSIVPTR 136.26 6.09E-08 37313000 868.78 801.2 937.7 1122.4 938.68 884.08 789.68 1016.12 1048.03 907 TRUE FALSE 880.9456004 888.6777255 700.9660377 1050.414288 1066.544108 1040.859175 939.5176576 929.7942636 1148.697964 722.1529021 1.219887918 1.230594965 0.970661526 1.454559394 1.476895135 1.441327968 1.300995475 1.287531021 1.590657547 1 9.496160522 -6.278562337 24.96880314 1.381777055 1.149402801 0.279428889 0.163154095 933.0423533 1360565.651 0.04398807 0.06543096 5.27E-07 6.278562337 -0.232374254 GGS(ph)GGGGGGGGGGYNR ddPTM_K562_Paclitaxel_30min_R1 1 GGSGGGGGGGGGGYNR 16 0 H3BNZ4;H3BPE7;P35637-2;P35637 H3BNZ4 FUS RNA-binding protein FUS 1 GGS(1)GGGGGGGGGGYNR 100.68 0.0034124 2918700 171.03 227.12 334.67 334.23 256.18 92.202 193.27 156.73 273.9 0 TRUE FALSE 173.4249477 251.9177297 250.1784194 312.7939838 291.0760532 108.5527301 229.9419736 143.4148082 300.2093188 0 0 GGS(ph)GSGPTIEEVD ddPTM_K562_Paclitaxel_30min_R1 2 GGSGSGPTIEEVD 13 0 A0A0G2JIW1;P0DMV8-2;P0DMV9;P0DMV8;V9GZ37 A0A0G2JIW1 HSPA1A;HSPA1B Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B 1 GGS(0.5)GS(0.5)GPTIEEVD;GGS(0.499)GS(0.499)GPT(0.002)IEEVD 132.17 0.00032038 33063000 4620.3 4815.9 5206.9 4832.1 4752.8 4422.5 5287.8 5653.3 4532 5753.5 TRUE FALSE 4684.998455 5341.716248 3892.353697 4522.190734 5400.211826 5206.76828 6291.132446 5173.016878 4967.31885 4580.933542 1.022716966 1.16607591 0.849685694 0.987176673 1.178845267 1.136617293 1.373329778 1.129249493 1.084346412 1 12.16142592 -6.763154877 24.97300362 1.167318082 1.006623365 0.269005993 0.114252713 56.95263426 829080.2399 0.035420651 0.042284501 1.73E-07 6.763154877 -0.160694717 GGS(ph)PDLWK ddPTM_K562_Paclitaxel_30min_R1 1 GGSPDLWK 8 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 GGS(1)PDLWK 120.99 0.0039932 68585000 3285.9 3241.2 5346.1 3702.8 3295.7 2823.1 2542 4021.6 3085 4329.1 TRUE FALSE 3331.912738 3595.085177 3996.410935 3465.318981 3744.630137 3323.737147 3024.33123 3679.939978 3381.328034 3446.827044 0.966660844 1.043012931 1.159446321 1.005364916 1.086399198 0.964288926 0.877424713 1.067631167 0.980997303 1 11.75105319 -7.270470511 24.433478 0.976005134 1.055026489 0.249300305 0.064154664 701.4275774 1897686.128 0.022869063 0.02047285 5.36E-08 7.270470511 0.079021355 GGSDGTPRGS(ph)PSPASVSSGR ddPTM_K562_Paclitaxel_30min_R1 2 GGSDGTPRGSPSPASVSSGR 20 1 P10398;Q96II5 P10398 ARAF Serine/threonine-protein kinase A-Raf 1 GGSDGT(0.115)PRGS(0.785)PS(0.093)PAS(0.005)VS(0.001)S(0.001)GR;GGSDGT(0.012)PRGS(0.961)PS(0.024)PAS(0.003)VSSGR 91.889 0.0028873 27983400 1913.58 1924.05 2238.4 1938.82 2098.09 2222.4 1795.43 2181.1 1370.63 2522.5 TRUE FALSE 1940.376024 2134.124286 1673.288236 1814.472763 2383.885379 2616.511436 2136.10347 1995.801941 1502.285136 2008.413115 0.966123956 1.062592287 0.833139469 0.903436026 1.186949717 1.302775518 1.063577734 0.993720827 0.747996079 1 10.97184034 -8.540660438 20.18931091 0.872949798 1.046499194 0.194510973 0.137898287 46.60987903 52909.21139 0.101827659 0.038544784 2.88E-09 8.540660438 0.173549396 GGSDGYGS(ph)GRGFGDGYNGYGGGPGGGNFGGSPGYGGGR ddPTM_K562_Paclitaxel_30min_R1 1 GGSDGYGSGRGFGDGYNGYGGGPGGGNFGGSPGYGGGR 38 1 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 GGS(0.004)DGY(0.12)GS(0.434)GRGFGDGY(0.339)NGY(0.103)GGGPGGGNFGGSPGYGGGR 54.011 0.00061464 27292000 482.51 376.28 447.61 446.66 485.9 395.43 403.52 421.21 635.74 336.45 TRUE FALSE 489.2666287 417.3635229 334.6053195 418.0132268 552.0878064 465.5539584 480.0858135 385.4255814 696.8056676 267.8813053 1.826430658 1.558016609 1.249080518 1.560441951 2.0609419 1.73791134 1.792158706 1.438792382 2.601173183 1 8.065450093 -6.555078043 24.49343405 1.794690131 1.522343379 0.065267864 0.406342837 374.9950491 285249.6962 0.113481045 0.146504715 2.79E-07 6.555078043 -0.272346751 GGSFGGRSS(ph)GS(ph)PYGGGYGSGGGSGGYGSR ddPTM_K562_Paclitaxel_30min_R1 1 GGSFGGRSSGSPYGGGYGSGGGSGGYGSR 29 1 P51991;H7C1J8;P51991-2 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 2 GGS(0.162)FGGRS(0.206)S(0.651)GS(0.378)PY(0.056)GGGY(0.228)GS(0.218)GGGS(0.085)GGY(0.01)GS(0.005)R 47.085 0.025222 23728000 1672.6 2057.5 2260.3 1915.8 1448.8 1771.6 1733.8 1947.8 2242.9 2063 TRUE FALSE 1696.02156 2282.144808 1689.65931 1792.929163 1646.151088 2085.768386 2062.779499 1782.322232 2458.340567 1642.559468 1.032548041 1.38938337 1.028674665 1.091545967 1.0021866 1.269828232 1.255832461 1.085088405 1.496652398 1 10.68172989 -7.291062937 24.92673835 1.228945339 1.119034403 0.109907483 0.158213324 1636.084043 1376677.124 0.053823857 0.047475187 5.12E-08 7.291062937 -0.109910936 GGSGYVNQLSAGYESVDS(ph)PTGSENSLTHQSNDTDSSHDPQEEK ddPTM_K562_Paclitaxel_30min_R1 1 GGSGYVNQLSAGYESVDSPTGSENSLTHQSNDTDSSHDPQEEK 43 0 Q15007 Q15007 WTAP Pre-mRNA-splicing regulator WTAP 1 GGSGYVNQLSAGY(0.003)ES(0.014)VDS(0.742)PT(0.146)GS(0.03)ENS(0.03)LT(0.03)HQS(0.002)NDT(0.001)DS(0.001)S(0.001)HDPQEEK 100.22 2.63E-23 20867000 926.02 879.42 1230.9 1103.9 863.58 925.88 650.54 1052.7 727.29 1172.5 TRUE FALSE 938.987137 975.4380496 920.1440714 1033.100795 981.2142165 1090.071818 773.976569 963.2665643 797.1494541 933.5438564 1.005830771 1.044876513 0.985646325 1.106644094 1.051063868 1.16767071 0.829073603 1.031838577 0.853896096 1 9.866573989 -7.763502831 24.99995157 0.931355303 1.057883068 0.435222134 0.073378976 53.84356661 652328.635 0.028298518 0.020144902 1.72E-08 7.763502831 0.126527766 GGSISVQVNSIKFDS(ph)E ddPTM_K562_Paclitaxel_30min_R1 10 GGSISVQVNSIKFDSE 16 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 GGSIS(0.001)VQVNS(0.169)IKFDS(0.83)E;GGSISVQVNS(0.002)IKFDS(0.998)E;GGSISVQVNS(0.001)IKFDS(0.999)E;GGSISVQVNS(0.001)IKFDS(0.999)E;GGSISVQVNS(0.011)IKFDS(0.989)E;GGSISVQVNS(0.002)IKFDS(0.998)E;GGSISVQVNS(0.001)IKFDS(0.999)E;GGSISVQVNSIKFDS(1)E;GGSISVQVNS(0.002)IKFDS(0.998)E;GGSISVQVNS(0.217)IKFDS(0.783)E 204.13 7.28E-67 273334000 26215.16 23761.21 37241.3 26878.04 21068.04 20653.45 19844.89 28802.74 25128.59 31502.54 TRUE FALSE 26582.25312 26355.53926 27839.27322 25154.20282 23937.86373 24316.04937 23610.35428 26355.76746 27542.30335 25082.30506 1.059801045 1.050762249 1.109916858 1.002866473 0.954372562 0.969450348 0.941315171 1.050771346 1.098077042 1 14.61438232 -6.3340515 8.565391974 0.998446698 1.071124877 0.335490983 0.045581356 0.441623629 48.77310046 0.01408853 0.020933719 4.63E-07 6.3340515 0.072678179 GGSYVFQSDEGPEPEAEES(ph)DLDSGSVHSASGRPDGPVR ddPTM_K562_Paclitaxel_30min_R1 1 GGSYVFQSDEGPEPEAEESDLDSGSVHSASGRPDGPVR 38 1 A0A5F9ZHX5;I3L1I4;A0A5F9ZHM2;Q12873-2;Q12873;Q12873-3 A0A5F9ZHX5;Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 GGSYVFQS(0.003)DEGPEPEAEES(0.284)DLDS(0.159)GS(0.177)VHS(0.177)AS(0.2)GRPDGPVR 53.682 0.00055303 11056000 1007.8 1186.6 1185.8 1145.5 1199.6 1241.5 1281.3 1344.4 1310.7 1294.1 TRUE FALSE 1021.912309 1316.157001 886.4301242 1072.032757 1363.005829 1461.662593 1524.419986 1230.184829 1436.598591 1030.36171 0.991799578 1.27737375 0.860309652 1.040443125 1.322842082 1.418591723 1.479499842 1.193934923 1.394266283 1 10.00893517 -6.76261814 23.51571146 1.325971622 1.046247196 0.384933503 0.1585891 14.27453222 284777.5997 0.046727333 0.056023647 1.73E-07 6.76261814 -0.279724426 GGTTSWGTSGQPS(ph)PSYDSSR ddPTM_K562_Paclitaxel_30min_R1 4 GGTTSWGTSGQPSPSYDSSR 20 0 Q99081;Q99081-3;H0YNQ5 Q99081 TCF12 Transcription factor 12 1 GGTTSWGT(0.036)S(0.128)GQPS(0.354)PS(0.354)Y(0.024)DS(0.064)S(0.04)R;GGTTSWGT(0.001)S(0.018)GQPS(0.978)PS(0.003)YDSSR;GGTTSWGT(0.007)S(0.025)GQPS(0.919)PS(0.048)YDSSR;GGTTSWGT(0.015)S(0.308)GQPS(0.646)PS(0.016)Y(0.011)DS(0.004)SR 224.12 2.58E-37 267037000 5486.59 5159.96 5959.72 5800.22 4978.27 4559.46 4315.47 5149.03 5701.13 6043.03 TRUE FALSE 5563.419188 5723.341883 4455.114977 5428.21985 5656.394657 5368.016213 5134.307904 4711.587762 6248.74901 4811.457169 1.156285714 1.189523606 0.925938821 1.128186256 1.175609479 1.115673698 1.067100407 0.979243418 1.298722776 1 12.23225817 -12.26691159 2.503625104 0.494230183 1.10853318 0.101879228 0.100857085 7202783.171 4582959.524 22094496.57 0.025365537 5.41E-13 12.26691159 0.614302997 GGVTGS(ph)PEASISGSKGDLK ddPTM_K562_Paclitaxel_30min_R1 1 GGVTGSPEASISGSKGDLK 19 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 GGVT(0.226)GS(0.773)PEAS(0.002)ISGSKGDLK 64.5 0.020247 7206300 933.67 711.57 1357 895.29 924.04 578.46 781.15 892.67 793.81 1030 TRUE FALSE 946.7442606 789.261619 1014.408567 837.8701066 1049.909892 681.041759 929.3691346 816.8321116 870.0589973 820.0854346 1.154445891 0.962413897 1.236954742 1.021686365 1.28024453 0.830452207 1.133258921 0.996032946 1.06093702 1 9.679630404 -7.254094529 24.99982169 1.011958446 1.121571725 0.239940929 0.111952302 953.8925572 3246785.248 0.035061407 0.034374837 5.57E-08 7.254094529 0.109613279 GHAVGDIPGVR ddPTM_K562_Paclitaxel_30min_R1 2 GHAVGDIPGVR 11 0 D6RD47;P62266 D6RD47 RPS23 40S ribosomal protein S23 0 ; 123.96 0.0042833 17435900 3120.8 3408.9 3276.8 3315.1 3057 3344.2 3680.9 3608.2 2855.1 3531.5 FALSE TRUE 3164.500828 3781.09523 2449.531313 3102.484324 3473.415155 3937.246915 4379.331559 3301.660888 3129.345112 2811.778362 1.12544462 1.344734451 0.871167993 1.103388648 1.235309014 1.400269299 1.557495292 1.174225157 1.112941601 1 11.45726716 -6.856063581 4.578944569 1.282465574 1.110994006 0.105923634 0.179608094 0.418049887 15.31867511 0.058804311 0.067877082 1.39E-07 6.856063581 -0.171471568 GHGQPGADAEKPFY(ph)VNVEFHHER ddPTM_K562_Paclitaxel_30min_R1 2 GHGQPGADAEKPFYVNVEFHHER 23 1 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 GHGQPGADAEKPFY(1)VNVEFHHER;GHGQPGADAEKPFY(1)VNVEFHHER 86.136 0.0010269 118417000 1682.28 1326.91 2644.9 1981.72 1547.2 1414.51 1556.7 2360.46 1880.69 2231.23 TRUE FALSE 1705.83711 1471.786521 1977.162283 1854.621349 1757.954834 1665.353488 1852.075698 2159.924189 2061.338678 1776.504101 0.960221318 0.828473472 1.11295115 1.043972456 0.989558557 0.937432954 1.042539501 1.215828428 1.16033432 1 10.7948253 -8.03466243 5.976459027 1.140097514 0.981877627 0.368033484 0.08537299 0.199975358 20.94544035 0.040749288 0.024108419 9.23E-09 8.03466243 -0.158219887 GHHLPSENLGKEPLDPDPSHSPS(ph)DKVGR ddPTM_K562_Paclitaxel_30min_R1 1 GHHLPSENLGKEPLDPDPSHSPSDKVGR 28 2 Q8NFQ8 Q8NFQ8 TOR1AIP2 Torsin-1A-interacting protein 2 1 GHHLPS(0.002)ENLGKEPLDPDPS(0.147)HS(0.372)PS(0.479)DKVGR 42.254 0.021094 11006000 1767.1 1499.8 3024.1 1981.1 1754.6 1171 1267 2554.6 1436.2 2824.6 TRUE FALSE 1791.844852 1663.553236 2260.628553 1854.041113 1993.606226 1378.660408 1507.406636 2337.570785 1574.153427 2248.94497 0.796749087 0.739703843 1.00519514 0.824404838 0.886462876 0.613025408 0.670272797 1.03940773 0.699951955 1 11.13503264 -11.55023612 3.799534836 1.003676851 0.811882166 0.160415532 0.131309255 204152367.8 25017.88051 6567949.932 0.031939579 2.82E-12 11.55023612 -0.191794684 GHHS(ph)PAPAR ddPTM_K562_Paclitaxel_30min_R1 1 GHHSPAPAR 9 0 A0A087WW83;A0A087X0K8;Q6PRD1 A0A087WW83 GPR179 Probable G-protein coupled receptor 179 1 GHHS(1)PAPAR 82.452 0.022404 10924000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 GHHVT(ph)DS(ph)ENDEPLNLNASDS(ph)ESEELHR ddPTM_K562_Paclitaxel_30min_R1 1 GHHVTDSENDEPLNLNASDSESEELHR 27 0 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 3 GHHVT(0.956)DS(0.983)ENDEPLNLNAS(0.372)DS(0.579)ES(0.109)EELHR 50.96 0.0084111 24771000 318.05 260.76 370.02 371.72 288.25 260.76 236.64 248.15 243.76 256.79 TRUE FALSE 322.5036813 289.2306586 276.6038747 347.879543 327.5145301 307.0021247 281.5412047 227.0681086 267.1742371 204.456057 1.577374062 1.414634826 1.35287689 1.701488075 1.601882257 1.501555538 1.377025502 1.110596144 1.306756283 1 7.675646993 -8.045198472 2.476863824 1.151727467 1.524663542 0.690307064 0.115200559 0.18547668 2.239065771 0.066199138 0.035257132 9.01E-09 8.045198472 0.372936076 GHHVTDS(ph)ENDEPLNLNAS(ph)DS(ph)ESEELHR ddPTM_K562_Paclitaxel_30min_R1 1 GHHVTDSENDEPLNLNASDSESEELHR 27 0 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 3 GHHVT(0.048)DS(0.952)ENDEPLNLNAS(0.975)DS(0.803)ES(0.223)EELHR 95.679 2.43E-06 20613000 649.59 521.09 632.97 568.69 556.66 554 491.44 778.68 380.73 737.35 TRUE FALSE 658.6862642 577.9843684 473.168895 532.2167688 632.4865163 652.2441215 584.6881745 712.5262736 417.3008176 587.0776653 1.12197466 0.984510913 0.805973252 0.906552574 1.077347264 1.111001423 0.995929856 1.213683156 0.710810243 1 9.197407562 -5.261212188 20.500541 0.985247287 1.121974894 0.086904907 0.13800706 4.309943874 385177.6598 0.034266782 0.192988555 5.48E-06 5.261212188 0.136727608 GHHVTDS(ph)ENDEPLNLNAS(ph)DSESEELHR ddPTM_K562_Paclitaxel_30min_R1 1 GHHVTDSENDEPLNLNASDSESEELHR 27 0 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 2 GHHVT(0.203)DS(0.797)ENDEPLNLNAS(0.955)DS(0.033)ES(0.012)EELHR 78.831 5.42E-05 22540000 533.45 475.42 722.32 750.33 511.86 506.69 546.61 620.26 296.02 535.64 TRUE FALSE 540.9199458 527.3279634 539.9613825 702.2071922 581.5839979 596.5443572 650.326394 567.5650415 324.4540437 426.476274 1.268347101 1.236476671 1.266099465 1.646532844 1.363696021 1.398775017 1.524882939 1.330824424 0.760778649 1 8.736321673 -8.705317326 6.646524485 0.882261097 1.387034141 0.702363675 0.130047546 0.101088895 9.081249732 0.095431387 0.034482118 1.97E-09 8.705317326 0.504773044 GHHVTDSENDEPLNLNAS(ph)DSESEELHR ddPTM_K562_Paclitaxel_30min_R1 2 GHHVTDSENDEPLNLNASDSESEELHR 27 0 Q96ST2;B8ZZB6 Q96ST2 IWS1 Protein IWS1 homolog 1 GHHVTDSENDEPLNLNAS(0.635)DS(0.357)ES(0.008)EELHR;GHHVTDSENDEPLNLNAS(0.932)DS(0.067)ES(0.002)EELHR 173.09 3.47E-37 37819000 1561.7 1624.72 1734.09 1903.65 1758.91 1959.72 1415.71 1829.18 809.09 1790.25 TRUE FALSE 1583.568618 1802.112424 1296.297533 1781.558409 1998.503321 2307.248826 1684.333582 1673.779742 886.8067096 1425.396067 1.110967439 1.264288899 0.90942971 1.249869037 1.402068777 1.618672086 1.181660046 1.1742559 0.622147577 1 10.47714713 -8.637436026 6.053137595 0.81669851 1.250487679 0.443635328 0.19281632 0.197396002 9.497388802 0.144041704 0.052381606 2.30E-09 8.637436026 0.433789169 GHLS(ph)EGLVTK ddPTM_K562_Paclitaxel_30min_R1 1 GHLSEGLVTK 10 0 Q16659 Q16659 MAPK6 Mitogen-activated protein kinase 6 1 GHLS(1)EGLVTK 88.155 0.020488 8823100 1358.7 970.55 1731.3 1396.7 955.98 1152.4 822.11 1288.2 1184.5 1671.1 TRUE FALSE 1377.725992 1076.517931 1294.211903 1307.121913 1086.200661 1356.76196 978.1010808 1178.759369 1298.276517 1330.528903 1.035472427 0.809090226 0.972704839 0.982407756 0.81636758 1.019716262 0.73512201 0.88593293 0.975759726 1 10.37778413 -6.711902389 24.99994122 0.896972008 0.941487093 0.041130121 0.096806028 407.5011711 205652.2033 0.027696027 0.03575536 1.94E-07 6.711902389 0.044515085 GHLSRPEAQSLS(ph)PYTTSANR ddPTM_K562_Paclitaxel_30min_R1 3 GHLSRPEAQSLSPYTTSANR 20 1 O94776;O94776-2 O94776 MTA2 Metastasis-associated protein MTA2 1 GHLSRPEAQS(0.004)LS(0.987)PY(0.003)T(0.004)T(0.001)S(0.001)ANR;GHLSRPEAQS(0.001)LS(0.998)PYT(0.001)TSANR;GHLSRPEAQS(0.005)LS(0.977)PY(0.001)T(0.008)T(0.004)S(0.005)ANR 115.87 4.64E-05 728825000 6970.8 6463.8 7131.6 7161.8 6992.2 7063.8 7668.6 7665 7091.4 7812.3 TRUE FALSE 7068.412707 7169.539543 5331.139377 6702.474203 7944.656019 8316.465749 9123.676817 7013.810407 7772.560655 6220.148972 1.13637354 1.152631485 0.857075836 1.077542392 1.277245297 1.337020349 1.46679394 1.127595245 1.249577894 1 12.60273342 -6.721936033 5.588446825 1.265607183 1.045915636 0.297941216 0.13828584 0.213632156 16.38059058 0.042000077 0.053332156 1.90E-07 6.721936033 -0.219691547 GHNSSNS(ph)PSLQAGGAEGAGDR ddPTM_K562_Paclitaxel_30min_R1 2 GHNSSNSPSLQAGGAEGAGDR 21 0 Q8IWZ3-6;H7C0V5 Q8IWZ3-6 ANKHD1;ANKHD1-EIF4EBP3 Ankyrin repeat and KH domain-containing protein 1 1 GHNS(0.003)S(0.015)NS(0.981)PS(0.001)LQAGGAEGAGDR;GHNSSNS(1)PSLQAGGAEGAGDR 128.33 6.69E-08 19967200 2807.1 2822.9 3541 3544.5 2961.1 3181.9 3246 3650.5 2573.7 3638.3 TRUE FALSE 2846.408061 3131.113768 2647.030755 3317.171635 3364.451952 3746.165289 3861.911555 3340.367239 2820.915385 2896.812463 0.982600046 1.080882456 0.913773601 1.145110937 1.161432435 1.293202559 1.333158982 1.153118223 0.973799796 1 11.50025057 -6.403660832 5.879502995 1.174227967 1.002090441 0.285087672 0.111832719 0.286351881 12.66964914 0.033080038 0.049312454 3.95E-07 6.403660832 -0.172137526 GHNSSNS(ph)PSLQAGGAEGAGDRGR ddPTM_K562_Paclitaxel_30min_R1 1 GHNSSNSPSLQAGGAEGAGDRGR 23 1 Q8IWZ3-6;H7C0V5 Q8IWZ3-6 ANKHD1;ANKHD1-EIF4EBP3 Ankyrin repeat and KH domain-containing protein 1 1 GHNS(0.235)S(0.235)NS(0.527)PS(0.004)LQAGGAEGAGDRGR 50.47 0.029065 2529900 235.75 358.98 437.17 357.28 323.22 342.56 216.16 343.96 511.31 392.1 TRUE FALSE 239.0512274 398.1746504 326.8010266 334.3656599 367.2480362 403.3082062 257.1752316 314.7384511 560.4236101 312.1898048 0.765724004 1.2754249 1.046802367 1.071033246 1.176361401 1.291868601 0.823778444 1.008163772 1.79513745 1 8.286279614 -5.249318678 23.5593053 1.152616195 0.765723464 0.18715309 0.248599167 1485.648293 2887572.412 0.060211931 0.929815702 5.63E-06 5.249318678 -0.386892731 GHPHSAS(ph)SPSER ddPTM_K562_Paclitaxel_30min_R1 1 GHPHSASSPSER 12 0 Q15003;C9JZP1;C9J470;E9PHA2 Q15003 NCAPH Condensin complex subunit 2 1 GHPHSAS(0.468)S(0.468)PS(0.064)ER 116.9 0.0027011 1154200 101.09 379.53 378.25 331.34 337.9 314.79 279.59 357.36 285.05 281.36 TRUE FALSE 102.5055719 420.9683689 282.7561094 310.0893354 383.9277007 370.6135866 332.6407429 327.0000374 312.4303261 224.0186776 0.457576007 1.879166387 1.262198815 1.384211972 1.713820048 1.654386994 1.484879505 1.459699883 1.394661952 1 7.807475212 -5.24762286 24.99242648 1.489321054 0.457575316 0.629435525 0.232712497 1461.808964 2644194.684 0.054679603 1.084494995 5.65E-06 5.24762286 -1.031745738 GHQQLYWSHPR ddPTM_K562_Paclitaxel_30min_R1 1 GHQQLYWSHPR 11 0 A0A2R8Y851;P62273;P62273-2 A0A2R8Y851 RPS29 40S ribosomal protein S29 0 166.86 0.00033451 25615000 1580.8 1646.9 1555.7 1591.6 1358.3 1271.9 1545 1758.3 1650.5 1802.4 FALSE TRUE 1602.936077 1826.714111 1162.944294 1489.5219 1543.323456 1497.453607 1838.155685 1608.92144 1809.0379 1435.069891 1.116974224 1.27290951 0.810374674 1.037943803 1.075434351 1.043470856 1.280882343 1.121145005 1.260592192 1 10.48690529 -7.725972518 24.99641316 1.175750436 1.057635596 0.1395712 0.128073393 328.3716275 231430.1414 0.049018316 0.037967908 1.88E-08 7.725972518 -0.11811484 GHS(ph)AQIAKPIRPGQHPAASPTHPSAIR ddPTM_K562_Paclitaxel_30min_R1 1 GHSAQIAKPIRPGQHPAASPTHPSAIR 27 2 P33176 P33176 KIF5B Kinesin-1 heavy chain 1 GHS(0.99)AQIAKPIRPGQHPAAS(0.009)PT(0.001)HPSAIR 49.555 0.0080025 38745000 3814.4 3908.6 6220.4 4588.1 3807.5 4054.6 3439.9 4683.7 4264.9 4803.3 TRUE FALSE 3867.813368 4335.354166 4649.983087 4293.839802 4326.145962 4773.626381 4092.603068 4285.79045 4674.562701 3824.384823 1.011355694 1.133608245 1.215877403 1.12275307 1.131200484 1.248207647 1.070133696 1.120648326 1.22230448 1 11.90101198 -5.272687667 4.805871137 1.147569495 1.004893176 0.228248969 0.070567592 0.223930295 14.80997141 0.016606915 0.104938766 5.34E-06 5.272687667 -0.142676318 GHSTGYES(ph)DNHTTPILCGAQYR ddPTM_K562_Paclitaxel_30min_R1 4 GHSTGYESDNHTTPILCGAQYR 22 0 A0A1W2PR07;J3KNN9;A0A1W2PQQ0;P19544-9;P19544-2;P19544-3;P19544-8 A0A1W2PR07 WT1 Wilms tumor protein 1 GHS(0.018)T(0.061)GY(0.006)ES(0.896)DNHT(0.015)T(0.003)PILCGAQYR;GHS(0.004)T(0.016)GY(0.061)ES(0.919)DNHTTPILCGAQYR;GHS(0.003)T(0.008)GY(0.002)ES(0.988)DNHTTPILCGAQYR;GHS(0.002)T(0.008)GY(0.021)ES(0.958)DNHT(0.01)T(0.001)PILCGAQYR 95.307 0.00030819 129875000 3017.76 2757.14 2480.62 2388.87 2092.64 1979.89 2875.67 3923.95 3208.64 3932.14 TRUE FALSE 3060.017951 3058.173869 1854.356801 2235.65857 2377.692997 2330.995692 3421.31337 3590.585955 3516.844209 3130.76771 0.977401786 0.976812767 0.592300986 0.714092765 0.759460049 0.74454444 1.092803327 1.146870764 1.123316878 1 11.61230075 -7.767572088 24.36816444 1.102987103 0.78802294 0.616197105 0.114470111 75.8321067 301311.9984 0.051183255 0.035521761 1.71E-08 7.767572088 -0.314964163 GHTAS(ph)ESDEQQWPEEK ddPTM_K562_Paclitaxel_30min_R1 1 GHTASESDEQQWPEEK 16 0 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 GHT(0.055)AS(0.783)ES(0.162)DEQQWPEEK 117.29 0.00038191 12618000 2950.9 2631.8 4667.8 3653.5 2656.3 2334.2 2397.3 3566 3085.2 3872.9 TRUE FALSE 2992.221704 2919.148824 3489.356159 3419.180862 3018.133032 2748.137596 2852.17516 3263.046042 3381.547245 3083.600854 0.97036609 0.946668834 1.131584898 1.108827317 0.978769035 0.891210544 0.92494953 1.05819339 1.096622879 1 11.59040032 -8.41787291 24.99975047 1.058092324 0.996332838 0.111735525 0.074433229 76.08331846 18076.87592 0.045828183 0.022015143 3.82E-09 8.41787291 -0.061759486 GHTASES(ph)DEQQWPEEK ddPTM_K562_Paclitaxel_30min_R1 1 GHTASESDEQQWPEEK 16 0 Q9NTI5-2;Q9NTI5;A9IYQ1;Q9NTI5-5 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 GHT(0.001)AS(0.008)ES(0.991)DEQQWPEEK 168.93 5.83E-08 10634000 1527 1598.4 2742.4 2058.6 1287.2 1386 1157.2 1762.9 1609 2462.6 TRUE FALSE 1548.382711 1772.918717 2050.047202 1926.57061 1462.538432 1631.78764 1376.772659 1613.130641 1763.551639 1960.720768 0.789700775 0.90421785 1.045557958 0.982582855 0.745918774 0.832238668 0.702176812 0.82272329 0.899440485 1 10.93716838 -6.753518759 24.99984693 0.81823164 0.93685387 0.179820143 0.09755806 260.7755838 823081.3947 0.029397238 0.037256717 1.76E-07 6.753518759 0.118622229 GHTDTEGRPPS(ph)PPPTST(ph)PEK ddPTM_K562_Paclitaxel_30min_R1 1 GHTDTEGRPPSPPPTSTPEK 20 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 2 GHT(0.023)DT(0.027)EGRPPS(0.941)PPPT(0.023)S(0.117)T(0.869)PEK 58.361 0.022091 21492000 2146.1 1761.6 3032 2420.7 1772 1970.6 1782.6 2565.8 1829.2 2787.9 TRUE FALSE 2176.152021 1953.937445 2266.534101 2265.447137 2013.3764 2320.058241 2120.839044 2347.819275 2004.902833 2219.72445 0.980370344 0.880261262 1.021088046 1.020598362 0.90703889 1.045201012 0.955451495 1.057707534 0.903221494 1 11.11616488 -5.772827232 24.99997534 0.989889919 0.930315787 0.152917152 0.054999755 324.2259481 711783.6128 0.013350306 0.02818386 1.69E-06 5.772827232 -0.059574133 GHTDTEGRPPS(ph)PPPTSTPEK ddPTM_K562_Paclitaxel_30min_R1 3 GHTDTEGRPPSPPPTSTPEK 20 1 E9PMQ6;Q00613-2;Q00613 E9PMQ6 HSF1 Heat shock factor protein 1 1 GHTDT(0.003)EGRPPS(0.951)PPPT(0.02)S(0.014)T(0.011)PEK;GHTDTEGRPPS(0.999)PPPTSTPEK;GHTDTEGRPPS(1)PPPTSTPEK 85.881 0.0012983 217695000 11098.5 9197.4 15744.7 11636.6 9884.6 8644.4 8134 12185.3 10486.4 13128.3 TRUE FALSE 11253.91324 10201.60324 11769.75576 10890.28056 11231.04987 10177.36297 9677.384038 11150.08271 11493.66557 10452.74525 1.076646658 0.975973583 1.125996613 1.041858411 1.07445935 0.973654549 0.925822241 1.066713331 1.099583439 1 13.35159427 -7.243957349 24.80445581 1.011866012 1.057146248 0.140579465 0.056524444 1717.15913 2436399.527 0.019585097 0.019536826 5.70E-08 7.243957349 0.045280235 GHVS(ph)PQVELPPYLER ddPTM_K562_Paclitaxel_30min_R1 2 GHVSPQVELPPYLER 15 0 Q8N5D0-5;Q8N5D0-3;Q8N5D0-6;Q8N5D0-2;Q8N5D0-4;Q8N5D0 Q8N5D0-5 WDTC1 WD and tetratricopeptide repeats protein 1 1 GHVS(1)PQVELPPYLER;GHVS(1)PQVELPPYLER 126.84 0.0001261 23247400 6887.4 6096 7105.3 7014.3 7351 7368 7438.7 7664.2 6868.3 7816.3 TRUE FALSE 6983.844849 6761.581895 5311.479138 6564.434193 8352.330653 8674.611348 8850.154492 7013.078372 7528.030903 6223.33377 1.122203164 1.086488713 0.853478109 1.05480992 1.3420991 1.393884961 1.422092213 1.12690057 1.209646016 1 12.60347191 -6.682739304 6.186215962 1.270896977 1.016911794 0.381048804 0.135709892 0.205886619 12.65347733 0.041551093 0.053573496 2.08E-07 6.682739304 -0.253985183 GHVT(ph)PNLSR ddPTM_K562_Paclitaxel_30min_R1 1 GHVTPNLSR 9 0 M0QZ12;Q96CP6-2;Q96CP6-3;Q96CP6 M0QZ12 GRAMD1A GRAM domain-containing protein 1A 1 GHVT(1)PNLSR 87.713 0.020795 5081600 1329.8 1400.4 1630.2 1419.2 1318.7 1377.5 1567.2 1610.7 1101.8 1650.2 TRUE FALSE 1348.421303 1553.300408 1218.635848 1328.178864 1498.329266 1621.780284 1864.568019 1473.860981 1207.632813 1313.888334 1.026283032 1.182216454 0.927503363 1.010876518 1.140377935 1.234336467 1.419122136 1.121755132 0.919128956 1 10.35962695 -6.858844126 5.429307676 1.166101789 1.03975104 0.099058311 0.13903493 0.432527704 19.7002826 0.046004863 0.052700196 1.38E-07 6.858844126 -0.126350749 GHYTEGAELVDSVLDVVR ddPTM_K562_Paclitaxel_30min_R1 4 GHYTEGAELVDSVLDVVR 18 0 Q13885;Q9BVA1;P68371;Q5ST81;Q13509-2;Q13509;A0A0B4J269;G3V2A3;Q5JP53;P07437 Q13885;Q5JP53 TUBB2A;TUBB2B;TUBB4B;TUBB;TUBB3 Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4B chain;Tubulin beta-3 chain;Tubulin beta chain 0 ;;; 231.41 1.99E-41 39821800 9140.16 10650.66 9021.99 9444.9 8443.29 8504.92 13396.05 14955.4 9241.45 17417.18 FALSE TRUE 9268.15044 11813.53508 6744.277042 8839.146388 9593.409044 10013.14815 15937.88056 13684.84542 10129.13256 13867.54916 0.6683337 0.851883411 0.486335182 0.637397877 0.691788357 0.722056077 1.149293244 0.986825088 0.730419806 1 13.75942522 -7.614387354 7.344326639 0.964625084 0.669772792 0.562396193 0.1261774 0.178461336 12.3039219 0.049395619 0.038137356 2.43E-08 7.614387354 -0.294852292 GHYTEGAELVDSVLDVVRK ddPTM_K562_Paclitaxel_30min_R1 2 GHYTEGAELVDSVLDVVRK 19 1 Q13885;Q9BVA1;P68371;Q5ST81;Q13509-2;Q13509;A0A0B4J269;G3V2A3;Q5JP53;P07437 Q13885;Q5JP53 TUBB2A;TUBB2B;TUBB4B;TUBB;TUBB3 Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4B chain;Tubulin beta-3 chain;Tubulin beta chain 0 ; 141.55 3.91E-13 15021700 9644.5 9686.9 12396.9 9431.4 8401.9 8120.2 10933.3 14786.8 11292 18247.8 FALSE TRUE 9779.552756 10744.5485 9267.149272 8826.512217 9546.381025 9560.203457 13007.8366 13530.56904 12376.64705 14528.88834 0.673110876 0.73952998 0.637842969 0.607514629 0.657062041 0.658013416 0.895308457 0.931287289 0.851864696 1 13.8266367 -7.779858437 5.684632941 0.916458204 0.661226567 0.882092117 0.046140695 0.056950809 5.665494432 0.019532895 0.013623939 1.66E-08 7.779858437 -0.255231636 GHYTIGK ddPTM_K562_Paclitaxel_30min_R1 2 GHYTIGK 7 0 P68363;Q71U36;Q9BQE3;F8VVB9;F8VQQ4;Q71U36-2;F5H5D3;A0A1W2PQM2;F8VS66;F8VRZ4;F8VWV9;P0DPH8;P0DPH7;P0DPH7-2;P68366;P68366-2;Q6PEY2;C9JJQ8;C9JDL2;C9JQ00;C9JEV8 P68363 TUBA1B;TUBA1A;TUBA1C;TUBA4A;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-3E chain 0 ; 114.19 0.0075447 40508000 21020.9 19752.5 30370 23475 20594.6 19756.4 18621.4 25473 18608.7 27626 FALSE TRUE 21315.25746 21909.14475 22702.71789 21969.41857 23399.93319 23259.92015 22154.71344 23308.90965 20396.14878 21995.80604 0.969060075 0.9960601 1.032138484 0.998800341 1.063836131 1.057470688 1.007224441 1.059697909 0.927274443 1 14.42494085 -5.486661138 2.856326028 1.022385633 0.969011371 0.130748476 0.038492601 0.535563365 7.814639855 0.009744654 0.051327089 3.26E-06 5.486661138 -0.053374262 GIAIAYEDEGS(ph)G ddPTM_K562_Paclitaxel_30min_R1 1 GIAIAYEDEGSG 12 0 H0YCR5;Q9BQC3-2;Q9BQC3-3;Q9BQC3 H0YCR5 DPH2 Diphthamide biosynthesis protein 2 1 GIAIAYEDEGS(1)G 79.693 0.02995 0 1985.1 1934.6 2033.3 2309.8 1763.9 1848.6 1667.5 2056.5 2060.2 2336 TRUE FALSE 2012.897525 2145.82617 1519.968267 2161.659766 2004.173043 2176.423254 1983.89942 1881.787489 2258.091415 1859.921918 1.082248403 1.153718417 0.817221547 1.16223146 1.077557624 1.170169153 1.066657369 1.011756177 1.214078609 1 10.86102634 GIAPAS(ph)PMLGNASNPNKADIPER ddPTM_K562_Paclitaxel_30min_R1 5 GIAPASPMLGNASNPNKADIPER 23 1 J3KNR0;P27448-8;P27448-3;P27448-4;P27448-2;P27448;H0YIY6;P27448-6;P27448-7;H0YKP9 J3KNR0 MARK3 MAP/microtubule affinity-regulating kinase 3 1 GIAPAS(0.998)PMLGNAS(0.002)NPNKADIPER;GIAPAS(0.947)PMLGNAS(0.053)NPNKADIPER;GIAPAS(0.906)PMLGNAS(0.094)NPNKADIPER;GIAPAS(0.996)PMLGNAS(0.004)NPNKADIPER;GIAPAS(0.994)PMLGNAS(0.006)NPNKADIPER 87.208 0.00094183 332417000 7171.37 6012.62 10731.1 7751.3 6248.84 5977.46 5289.96 7534.2 6769.42 9557.3 TRUE FALSE 7271.791306 6669.098185 8021.901084 7254.166312 7100.037802 7037.478603 6293.702295 6894.122683 7419.653038 7609.517014 0.955617984 0.876415438 1.054193199 0.953301806 0.933047103 0.924825924 0.827083018 0.905986894 0.975049142 1 12.89358917 -6.93284792 2.923765715 0.915273879 0.960500054 0.052293043 0.058826512 0.641595798 11.13890981 0.020090228 0.022759711 1.17E-07 6.93284792 0.045226174 GIEYSRVS(ph)PQPMISR ddPTM_K562_Paclitaxel_30min_R1 3 GIEYSRVSPQPMISR 15 1 Q9P270;D6RIF6 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 GIEY(0.013)S(0.08)RVS(0.907)PQPMISR;GIEYS(0.006)RVS(0.525)PQPMIS(0.469)R;GIEY(0.008)S(0.01)RVS(0.98)PQPMIS(0.001)R 90.872 0.0085349 218125000 7465.4 6065.8 6120 6308.9 5354.2 6044.1 4864.4 5551.9 4493.2 5788 TRUE FALSE 7569.938633 6728.084557 4574.930309 5904.275392 6083.532687 7115.936272 5787.394506 5080.231441 4924.791936 4608.402423 1.642638367 1.459960294 0.992736721 1.281197875 1.320095801 1.544122153 1.255835315 1.102384509 1.068654923 1 12.17005099 -2 0.08302794 0.744350462 2.706203495 0.398016485 0.168425455 225.6258699 1.363135697 4.653116877 50.63610231 0.01 2 1.961853033 GIGLDES(ph)ELDS(ph)EAELMR ddPTM_K562_Paclitaxel_30min_R1 2 GIGLDESELDSEAELMR 17 0 Q96RS0 Q96RS0 TGS1 Trimethylguanosine synthase 2 GIGLDES(1)ELDS(1)EAELMR;GIGLDES(1)ELDS(1)EAELMR 179.14 1.99E-09 10716300 3547.1 3087.7 3546 3144.6 2219.2 2539.7 3605.6 4152.6 4912.7 4297.8 TRUE FALSE 3596.770344 3424.825528 2650.768444 2942.919431 2521.492611 2990.080136 4289.743778 3799.81071 5384.586786 3421.906001 1.051101445 1.000853187 0.774646774 0.860023458 0.736867877 0.873805457 1.253612395 1.110436905 1.573563618 1 11.74058441 -7.760667762 24.97438065 1.243606364 0.87564932 0.53017941 0.161931749 15.64881924 506522.4851 0.06360977 0.046322378 1.74E-08 7.760667762 -0.367957044 GIGLDES(ph)ELDSEAELMR ddPTM_K562_Paclitaxel_30min_R1 2 GIGLDESELDSEAELMR 17 0 Q96RS0 Q96RS0 TGS1 Trimethylguanosine synthase 1 GIGLDES(0.999)ELDS(0.001)EAELMR;GIGLDES(1)ELDSEAELMR 167.92 4.05E-08 20239100 2568 2083.1 2192.7 2536.5 2124.97 2039 2579.6 3084.9 2926 3429 TRUE FALSE 2603.959923 2310.539903 1639.125766 2373.820243 2414.42689 2400.588021 3069.065634 2822.81849 3207.055374 2730.167918 0.953772809 0.846299558 0.60037544 0.869477744 0.884351059 0.879282188 1.124130722 1.033935851 1.174673306 1 11.41477397 -7.653636353 3.732575737 1.086605714 0.825148176 0.606046747 0.096699349 0.163363087 4.327045851 0.041049413 0.03062629 2.22E-08 7.653636353 -0.261457539 GIGLDESELDS(ph)EAELMR ddPTM_K562_Paclitaxel_30min_R1 6 GIGLDESELDSEAELMR 17 0 Q96RS0 Q96RS0 TGS1 Trimethylguanosine synthase 1 GIGLDESELDS(1)EAELMR;GIGLDESELDS(1)EAELMR;GIGLDESELDS(1)EAELMR;GIGLDES(0.394)ELDS(0.606)EAELMR;GIGLDESELDS(1)EAELMR;GIGLDES(0.481)ELDS(0.519)EAELMR 278.27 3.67E-132 295886400 6639.72 6134.25 6441.22 6024.13 5444.83 5341.23 6312.71 6956.52 8064.08 7659.23 TRUE FALSE 6732.696565 6804.00816 4815.054347 5637.769265 6186.508028 6288.422146 7510.513768 6365.520205 8838.670915 6098.274722 1.104033005 1.115726738 0.78957649 0.924485944 1.014468569 1.031180528 1.231580096 1.04382313 1.449372375 1 12.57418543 -7.634973119 4.228183411 1.184566566 0.985019552 0.291410995 0.141675521 0.283367582 9.062154262 0.05615161 0.042534602 2.32E-08 7.634973119 -0.199547014 GIITDS(ph)FGR ddPTM_K562_Paclitaxel_30min_R1 4 GIITDSFGR 9 0 C9JUH3;A0A0A0MT72;Q9BSQ5-3;Q9BSQ5-4;Q9BSQ5;Q9BSQ5-2 C9JUH3 CCM2 Cerebral cavernous malformations 2 protein 1 GIIT(0.005)DS(0.995)FGR;GIITDS(1)FGR;GIITDS(1)FGR;GIIT(0.045)DS(0.955)FGR 117.71 0.003446 210525000 8372.8 7814.1 7338.3 7611.8 6940.4 7704.2 7950.6 9361.2 8643.7 10409.6 TRUE FALSE 8490.045032 8667.269864 5485.655406 7123.613217 7885.799982 9070.431698 9459.184845 8565.907629 9473.966006 8288.117806 1.02436346 1.045746461 0.661869864 0.8594971 0.951458481 1.094389813 1.14129469 1.033516635 1.143078106 1 13.01682879 -7.137542212 3.519411292 1.088441908 0.892686846 0.407605645 0.105919622 0.260433091 5.903212489 0.038827954 0.038994966 7.29E-08 7.137542212 -0.195755062 GILHLS(ph)PDVYQEMEASR ddPTM_K562_Paclitaxel_30min_R1 2 GILHLSPDVYQEMEASR 17 0 H0YBY0;E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3;E5RJ67;E5RJN7 H0YBY0 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 1 GILHLS(1)PDVYQEMEASR;GILHLS(1)PDVYQEMEASR 116 0.00031987 47834500 4211.2 4092 4305.3 4256.9 4552.9 4374.9 4101.9 4978.7 3858.5 5337.8 TRUE FALSE 4270.169793 4538.778398 3218.373768 3983.881487 5173.082061 5150.727088 4880.214112 4555.728359 4229.126165 4249.95343 1.004756843 1.067959561 0.757272714 0.937394151 1.217209117 1.211949066 1.148298256 1.07194783 0.995099413 1 12.05323132 -6.740036319 24.87380545 1.118285298 0.937670045 0.382875139 0.10236807 238.3268814 276972.9579 0.032047759 0.041333809 1.82E-07 6.740036319 -0.180615253 GILS(ph)QMGRHS(ph)QS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 GILSQMGRHSQSR 13 1 B3KS81 B3KS81 SRRM5 Serine/arginine repetitive matrix protein 5 3 GILS(1)QMGRHS(1)QS(1)R 40.801 0.031061 0 320.07 326.2 451.69 498.96 205.34 221.09 184.54 227.23 183.18 382.59 TRUE FALSE 324.5519675 361.8156191 337.6552731 466.9589389 233.3107844 260.2972072 219.5555016 207.9253932 200.7752575 304.617948 1.065439412 1.187768552 1.108454952 1.532933112 0.765912797 0.854503843 0.720756945 0.682577617 0.659105147 1 8.250857137 -6.793115285 24.69140341 0.765320022 1.2128579 0.682073263 0.147936618 95.69773172 74595.92703 0.04521424 0.05127298 1.61E-07 6.793115285 0.447537878 GILSLPHQAS(ph)PVSR ddPTM_K562_Paclitaxel_30min_R1 3 GILSLPHQASPVSR 14 0 O75925;O75925-2 O75925 PIAS1 E3 SUMO-protein ligase PIAS1 1 GILSLPHQAS(0.634)PVS(0.366)R;GILSLPHQAS(0.986)PVS(0.014)R;GILSLPHQAS(0.999)PVS(0.001)R 141.1 4.80E-06 431761400 7692.23 7395.3 7454.57 8097 7815.42 7350.14 9089.8 8639.2 5965.23 8726.3 TRUE FALSE 7799.944953 8202.743863 5572.571607 7577.694661 8880.01252 8653.584128 10814.5421 7905.246036 6538.216995 6947.87527 1.122637447 1.180611848 0.802054065 1.090649208 1.278090377 1.245500789 1.556525078 1.137793315 0.941038338 1 12.76235614 -6.60350826 5.991142023 1.219613728 1.033455201 0.125248113 0.182625212 0.377101288 21.77065536 0.056578887 0.073462289 2.49E-07 6.60350826 -0.186158527 GILT(ph)LKYPIEHGIVTNWDDMEK ddPTM_K562_Paclitaxel_30min_R1 1 GILTLKYPIEHGIVTNWDDMEK 22 1 P60709;P63261;A0A2R8Y793;I3L3I0;A0A2R8YGF8;C9JUM1;E7EVS6;I3L1U9;G5E9R0;C9JZR7;K7EM38;I3L4N8;J3KT65;I3L3R2 P60709 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 1 GILT(0.943)LKY(0.056)PIEHGIVT(0.001)NWDDMEK 41.087 0.029401 18160000 1332.6 1540.9 1107.5 1372.2 1626.5 1292.1 1541.6 1487.6 1211.7 1688.2 TRUE FALSE 1351.260511 1709.140673 827.8979276 1284.193234 1848.056837 1521.235793 1834.110552 1361.219095 1328.089199 1344.143913 1.005294521 1.271545893 0.615929529 0.955398615 1.374895068 1.131750684 1.364519479 1.012703388 0.988055807 1 10.3924719 -3.989155154 10.09507174 1.080195658 0.866518606 0 0.215212554 0 0 0.050999616 0 0.000102529 3.989155154 -0.213677052 GIPHLVTHDAR ddPTM_K562_Paclitaxel_30min_R1 2 GIPHLVTHDAR 11 0 Q8TD47;P62701;C9JEH7;P22090 Q8TD47 RPS4Y2;RPS4X;RPS4Y1 "40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, X isoform;40S ribosomal protein S4, Y isoform 1" 0 ; 169.76 0.00014273 183331000 8585.2 8434.4 8777 8630.4 7701.3 8573.2 9591 9794.7 8696.8 9775.3 FALSE TRUE 8705.419288 9355.296315 6561.137797 8076.884772 8750.347444 10093.53665 11410.84218 8962.579098 9532.166498 7783.088494 1.118504472 1.202003077 0.842999254 1.037748033 1.124277008 1.296854925 1.466107213 1.151545316 1.224728012 1 12.92612705 -7.053276424 3.917222739 1.251082319 1.04838116 0.259096707 0.138969166 0.291319223 9.110048661 0.047699932 0.049560594 8.85E-08 7.053276424 -0.202701159 GIPLATGDT(ph)SPEPELLPGAPLPPPK ddPTM_K562_Paclitaxel_30min_R1 1 GIPLATGDTSPEPELLPGAPLPPPK 25 0 K7ENA8;O75821;K7EL60;K7ER90;K7EL20 K7ENA8 EIF3G Eukaryotic translation initiation factor 3 subunit G 1 GIPLAT(0.144)GDT(0.428)S(0.428)PEPELLPGAPLPPPK 79.408 0.00021925 7060200 1915.5 1656.1 3040.8 2345.9 1797.7 1639.4 1873.7 2160.2 1346.2 2546.5 TRUE FALSE 1942.32291 1836.918599 2273.112432 2195.444474 2042.577175 1930.124572 2229.224794 1976.677526 1475.508525 2027.521902 0.957978756 0.905991988 1.121128423 1.082821582 1.007425455 0.951962378 1.099482472 0.974922897 0.72773987 1 10.98550178 -8.540067947 24.44227477 0.859690238 1.018718163 0.318668839 0.08899328 210.4974691 299310.287 0.058637434 0.022175036 2.88E-09 8.540067947 0.159027924 GIPLATGDTS(ph)PEPELLPGAPLPPPK ddPTM_K562_Paclitaxel_30min_R1 1 GIPLATGDTSPEPELLPGAPLPPPK 25 0 K7ENA8;O75821;K7EL60;K7ER90;K7EL20 K7ENA8 EIF3G Eukaryotic translation initiation factor 3 subunit G 1 GIPLAT(0.015)GDT(0.204)S(0.78)PEPELLPGAPLPPPK 77.241 0.00019181 9228500 3037.5 2631.2 4224.8 3412.6 2989 2581.4 2734.3 3743.7 2378.4 3685.8 TRUE FALSE 3080.034371 2918.483314 3158.196988 3193.73111 3396.152404 3039.175045 3253.119151 3425.649318 2606.855947 2934.631937 1.049547077 0.994497224 1.076181632 1.088290177 1.1572669 1.035623925 1.108527141 1.167318216 0.888307632 1 11.51896386 -8.76864386 24.99999777 0.944153804 1.083071464 0.50627215 0.055482753 152.1417887 527918.5755 0.050830544 0.014219459 1.70E-09 8.76864386 0.13891766 GIPNMLLS(ph)EEETES ddPTM_K562_Paclitaxel_30min_R1 1 GIPNMLLSEEETES 14 0 F5GYQ2;Q9UI30-2;Q9UI30 F5GYQ2 TRMT112 Multifunctional methyltransferase subunit TRM112-like protein 1 GIPNMLLS(1)EEETES 111.39 0.0031243 15319000 2731.1 2451.4 2431.3 2443.3 2167 2242.6 2017.1 2828.2 2473 2758.3 TRUE FALSE 2769.343826 2719.052142 1817.488245 2286.597674 2462.182088 2640.293622 2399.834195 2587.926757 2710.5427 2196.156946 1.260995409 1.23809555 0.827576667 1.041181359 1.121132118 1.202233578 1.092742574 1.178388804 1.234220853 1 11.10076544 -6.995431074 22.77355988 1.150958586 1.083220759 0.028723796 0.126175665 149.0106084 742704.7685 0.041410079 0.046720813 1.01E-07 6.995431074 -0.067737827 GIPNMLLSEEET(ph)ES ddPTM_K562_Paclitaxel_30min_R1 1 GIPNMLLSEEETES 14 0 F5GYQ2;Q9UI30-2;Q9UI30 F5GYQ2 TRMT112 Multifunctional methyltransferase subunit TRM112-like protein 1 GIPNMLLS(0.104)EEET(0.77)ES(0.126) 106.26 0.0098454 16375000 2471.2 2122.9 2507.5 2555.3 2033.5 2143.5 2548.6 2479.3 2508.9 2395 TRUE FALSE 2505.804424 2354.685401 1874.450613 2391.414495 2310.497127 2523.619629 3032.183545 2268.66799 2749.891055 1906.897685 1.314073872 1.234825245 0.982984366 1.254086422 1.211652384 1.323416378 1.590113391 1.189716683 1.442075826 1 10.89701172 -7.233649141 4.099829392 1.339354479 1.19022421 0.084939731 0.165970106 0.427579771 16.66097708 0.056153097 0.053869585 5.84E-08 7.233649141 -0.149130268 GIPNMLLSEEETES(ph) ddPTM_K562_Paclitaxel_30min_R1 3 GIPNMLLSEEETES 14 0 F5GYQ2;Q9UI30-2;Q9UI30 F5GYQ2 TRMT112 Multifunctional methyltransferase subunit TRM112-like protein 1 GIPNMLLSEEETES(1);GIPNMLLSEEET(0.044)ES(0.956);GIPNMLLSEEETES(1) 163.51 6.63E-05 26419100 5236.8 5478.4 5511.9 5917.8 5617.1 5219 5104.5 5457.6 5641.7 6149.5 TRUE FALSE 5310.131357 6076.550239 4120.352675 5538.258795 6382.244118 6144.516372 6073.052228 4993.942815 6183.610493 4896.228524 1.084535031 1.24106753 0.841536022 1.131127513 1.303502091 1.254948853 1.2403531 1.019957053 1.262933391 1 12.25745518 -6.51969336 24.98744323 1.190680555 1.059595569 0.150799243 0.130826813 227.8456344 1787324.89 0.03805822 0.050135714 3.02E-07 6.51969336 -0.131084986 GIQYIDLSS(ph)DSEDVVSPNCSNTVQEK ddPTM_K562_Paclitaxel_30min_R1 1 GIQYIDLSSDSEDVVSPNCSNTVQEK 26 0 D6RAY8;Q9H4L7;Q9H4L7-2 D6RAY8 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 1 GIQYIDLS(0.157)S(0.791)DS(0.052)EDVVSPNCSNTVQEK 153.18 5.14E-26 17486000 1545.9 959.15 1829 1587.8 960.89 1212.6 1343.2 1718.9 1559.2 1551.5 TRUE FALSE 1567.54737 1063.873241 1367.246329 1485.965615 1091.779486 1427.637584 1598.065188 1572.868716 1708.968127 1235.303448 1.268957333 0.861224213 1.106810097 1.202915459 0.883814813 1.155697886 1.293662047 1.273265057 1.383439939 1 10.27064976 -7.528732971 7.662238332 1.255959585 1.059069871 0.227868998 0.148454905 0.166375515 70.28875578 0.053134577 0.042526678 2.96E-08 7.528732971 -0.196889714 GIRDDIEEEDDQEAYFR ddPTM_K562_Paclitaxel_30min_R1 2 GIRDDIEEEDDQEAYFR 17 1 A0A0A0MSJ0;Q86XP3-2;Q86XP3;J3KRE3 A0A0A0MSJ0 DDX42 ATP-dependent RNA helicase DDX42 0 ; 248.81 5.05E-63 22771500 1205.33 1296.11 1676.76 1434.77 1225.91 1119.9 1233.8 1439.34 1316.6 1572.01 FALSE TRUE 1222.208339 1437.623673 1253.4412 1342.750274 1392.899697 1318.498541 1467.907109 1317.059083 1443.065313 1251.633499 0.976490594 1.148597951 1.001444273 1.072798287 1.112865466 1.053422221 1.172793082 1.052272158 1.152945582 1 10.28959646 -6.522820221 23.90201151 1.095320316 1.050203253 0.099392696 0.063101189 2.728638565 1114555.996 0.017171845 0.022420872 3.00E-07 6.522820221 -0.045117063 GIS(ph)PIVFDR ddPTM_K562_Paclitaxel_30min_R1 4 GISPIVFDR 9 0 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 1 GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR;GIS(1)PIVFDR 141.88 0.00071025 584951000 13516 12330 15567 13732.6 12293.3 11882.1 11789.5 13866.7 10618.7 13779.8 TRUE FALSE 13705.2657 13676.2311 11636.91832 12851.8525 13967.85559 13989.2236 14026.49608 12688.63728 11638.67358 10971.4692 1.249173238 1.246526865 1.06065269 1.171388469 1.273107123 1.275054722 1.27845194 1.156512137 1.060812674 1 13.42146911 -8.75609426 2.482947578 1.006460524 1.218808504 0.596990853 0.0628459 0.213056582 2.467522046 0.064856986 0.018552824 1.75E-09 8.75609426 0.21234798 GIS(ph)PVVSEHR ddPTM_K562_Paclitaxel_30min_R1 2 GISPVVSEHR 10 0 Q99700;Q99700-4;Q99700-2;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;A0A5F9ZHH4;A0A5F9ZHX3;F8WB06;F8W0B5 Q99700 ATXN2 Ataxin-2 1 GIS(1)PVVSEHR;GIS(1)PVVSEHR 115.92 0.0028069 24635600 6061.4 6475.4 7805.7 7569.4 6348.7 6837.5 6453.3 7331.7 4746.3 7847.8 TRUE FALSE 6146.278301 7182.40607 5835.054495 7083.932563 7213.500424 8050.034622 7677.779987 6708.826322 5202.203322 6248.414052 0.983654132 1.149476653 0.933845684 1.133716893 1.154453012 1.288332456 1.228756597 1.073684661 0.832563796 1 12.60927434 -8.606962903 6.030648613 0.920465746 1.12771895 0.379765981 0.104791005 0.227052434 12.72174649 0.077864311 0.028438784 2.47E-09 8.606962903 0.207253204 GIS(ph)PVVSEHRK ddPTM_K562_Paclitaxel_30min_R1 2 GISPVVSEHRK 11 1 Q99700;Q99700-4;Q99700-2;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;A0A5F9ZHH4;A0A5F9ZHX3;F8WB06;F8W0B5 Q99700 ATXN2 Ataxin-2 1 GIS(1)PVVSEHRK;GIS(1)PVVSEHRK 105.65 0.0038407 113612000 5159.1 5446.3 8777.1 6308.2 5562.3 4350.7 4716.5 7129 4368.2 7530.8 TRUE FALSE 5231.343317 6040.945452 6561.212551 5903.620286 6319.979431 5122.235558 5611.431253 6523.346952 4787.785128 5996.018826 0.872469462 1.007492743 1.094261499 0.984590018 1.054029284 0.854272761 0.935859512 1.087946376 0.798494012 1 12.5497892 -7.237422931 24.91814189 0.940845216 1.006937398 0.119683346 0.090192042 1758.098951 1824107.839 0.029303172 0.029288903 5.79E-08 7.237422931 0.066092182 GISGES(ph)LSLHCVSDGIPK ddPTM_K562_Paclitaxel_30min_R1 1 GISGESLSLHCVSDGIPK 18 0 Q6WRI0-3;Q6WRI0-2;Q6WRI0 Q6WRI0-3 IGSF10 Immunoglobulin superfamily member 10 1 GIS(0.119)GES(0.881)LSLHCVSDGIPK 72.417 0.020366 6881700 1902.5 1541.8 2661.9 1974 1652 1304.7 1239.2 1857.3 1835.9 2184.7 TRUE FALSE 1929.14087 1710.138938 1989.870423 1847.396475 1877.030369 1536.070226 1474.331731 1699.510772 2012.246398 1739.456941 1.109047786 0.983145313 1.143960725 1.062053582 1.079089873 0.883074591 0.84758162 0.977035264 1.156824496 1 10.76442125 -7.23114062 23.87854611 0.963635294 1.07339178 0.260565239 0.085638357 563.4310945 444041.4848 0.029588165 0.029583708 5.87E-08 7.23114062 0.109756486 GISHVIVDEIHER ddPTM_K562_Paclitaxel_30min_R1 4 GISHVIVDEIHER 13 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 ;;; 190.78 8.04E-05 82465000 13435.2 12929.7 13590.1 13826.7 13219.6 12833.9 14587.6 16424.8 9222.6 16438.8 FALSE TRUE 13623.33425 14341.40837 10159.11117 12939.91735 15020.33333 15109.81197 17355.52095 15029.41072 10108.47194 13088.56354 1.040857861 1.095720576 0.776182287 0.988643048 1.147592193 1.154428591 1.326006548 1.148285729 0.772313318 1 13.67601915 -6.698471158 6.497186827 1.113577044 0.968075433 0.110246903 0.153999529 0.4098509 32.45842929 0.047650568 0.061297072 2.00E-07 6.698471158 -0.145501611 GISQEQMQEFR ddPTM_K562_Paclitaxel_30min_R1 2 GISQEQMQEFR 11 0 H7C144;F5GXS2;O43707-3;O43707-2;O43707 H7C144 ACTN4 Alpha-actinin-4 0 ; 167.93 0.00087318 35007000 1163.97 1412.2 1580.97 1378.4 1206.95 1219.5 1504.08 1459.19 1013.25 1365.17 FALSE TRUE 1180.269171 1566.388772 1181.83457 1289.995593 1371.357024 1435.761202 1789.471328 1335.222702 1110.57719 1086.947605 1.085856546 1.441089492 1.087296725 1.186805682 1.261658812 1.320911143 1.646327128 1.228414963 1.021739397 1 10.08606668 -8.719920679 4.488824661 1.004220907 1.293375152 0.328080734 0.156904147 0.231640205 9.836622707 0.130642809 0.041715476 1.91E-09 8.719920679 0.289154245 GIVVY(ph)TGDR ddPTM_K562_Paclitaxel_30min_R1 2 GIVVYTGDR 9 0 P05023-2;P05023-3;P05023-4;P05023 P05023-2 ATP1A1 Sodium/potassium-transporting ATPase subunit alpha-1 1 GIVVY(0.99)T(0.01)GDR;GIVVY(0.989)T(0.011)GDR 187 3.55E-05 78463000 1951.58 2159.7 2689.1 2503.8 2298 2260.67 1831 1991.33 1468.83 1585.55 TRUE FALSE 1978.908141 2395.50335 2010.203447 2343.217475 2611.026505 2661.568083 2178.422692 1822.154087 1609.917684 1262.41404 1.567558724 1.897557595 1.592348773 1.856140221 2.06828063 2.108316289 1.725600812 1.443388643 1.275269154 1 10.30196944 -8.590506061 1.56823783 1.048858055 1.850764337 0.742519432 0.169066316 0.206472363 0.919449853 0.16697003 0.053236894 2.57E-09 8.590506061 0.801906282 GIWGLLIILS(ph)VS(ph)S(ph)SWVGT(ph)TQIVK ddPTM_K562_Paclitaxel_30min_R1 1 GIWGLLIILSVSSSWVGTTQIVK 23 0 G3V2S4;G3V4Z9;A4IF30-2;A4IF30 G3V2S4 SLC35F4 Solute carrier family 35 member F4 4 GIWGLLIILS(0.998)VS(0.96)S(0.83)S(0.22)WVGT(0.496)T(0.496)QIVK 49.865 0.015003 7074700 690.77 592.98 1044.6 1050.3 709.14 925.78 501.92 908.29 1084.4 1122.4 TRUE FALSE 700.4429112 657.7235617 780.8778106 982.938459 805.7368738 1089.954084 597.1566998 831.1250951 1188.561465 893.6542639 0.783796306 0.735993312 0.873803038 1.099909102 0.901620354 1.219659692 0.668218934 0.930029799 1.330001448 1 9.803572981 -6.008483166 4.323567465 1.006780613 0.764721734 0.276675929 0.170791517 0.272423268 12.53358555 0.046217636 0.09308335 9.81E-07 6.008483166 -0.242058879 GIWHNDNK ddPTM_K562_Paclitaxel_30min_R1 1 GIWHNDNK 8 0 P12277;H0YJG0;P06732 P12277 CKB;CKM "Creatine kinase B-type;Creatine kinase M-type;Creatine kinase M-type, N-terminally processed" 0 103.74 0.026931 8366500 4247.3 4033 5994.1 4877.1 3706.6 3777.8 4041.6 5340.1 3667.7 5485.1 FALSE TRUE 4306.775304 4473.336579 4480.815321 4564.304635 4211.501673 4447.739787 4808.472501 4886.425173 4019.998973 4367.233609 0.986156384 1.024295236 1.026007702 1.045124911 0.964340828 1.018434136 1.101033957 1.118883396 0.920490941 1 12.09250399 -7.545883489 24.98202067 1.047112602 1.01079888 0.028732619 0.055379185 622.5434009 676045.2814 0.020928308 0.016211864 2.85E-08 7.545883489 -0.036313722 GIY(ph)EIY(ph)SVT(ph)NAVLK ddPTM_K562_Paclitaxel_30min_R1 1 GIYEIYSVTNAVLK 14 0 A0A590UJ50 A0A590UJ50 3 GIY(0.966)EIY(0.62)S(0.468)VT(0.946)NAVLK 49.12 0.031133 0 214.39 278.24 207.1 298.33 59.622 47.729 56.619 284.68 172.45 226.29 TRUE FALSE 217.3921214 308.6191841 154.8150436 279.1964491 67.74352581 56.193068 67.36215968 260.4946571 189.014593 180.1719738 1.206581228 1.712914488 0.859262628 1.54961087 0.375993693 0.311885732 0.373877015 1.445811197 1.049078772 1 7.493230803 -5.777490336 24.56912754 0.855490498 1.459747727 0.237732387 0.421214551 254.9491266 390250.6241 0.119179656 0.249410157 1.67E-06 5.777490336 0.604257229 GIYLWDVEGR ddPTM_K562_Paclitaxel_30min_R1 2 GIYLWDVEGR 10 0 P04181 P04181 OAT "Ornithine aminotransferase, mitochondrial;Ornithine aminotransferase, hepatic form;Ornithine aminotransferase, renal form" 0 ; 143.37 0.0044545 21826000 3066.4 3202.3 3231 2984.9 2482.9 2991.9 3111.2 3497.2 2846.7 4398.5 FALSE TRUE 3109.339061 3551.937943 2415.294089 2793.461874 2821.113016 3522.471457 3701.533958 3200.091031 3120.138254 3502.083286 0.887854116 1.014235715 0.689673515 0.797657179 0.805552806 1.005821726 1.056952007 0.913767826 0.890937765 1 11.77399768 -7.261461466 25 0.973322366 0.838138131 0.369035534 0.087931839 2.495316175 2822796.445 0.032293659 0.030334286 5.48E-08 7.261461466 -0.135184235 GKAS(ph)PFEEDQNR ddPTM_K562_Paclitaxel_30min_R1 3 GKASPFEEDQNR 12 1 C9JW01;A0A0A0MR59;Q8TB72-2;Q8TB72-4;Q8TB72-3;Q8TB72;A0A0C4DG68 C9JW01 PUM2 Pumilio homolog 2 1 GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR;GKAS(1)PFEEDQNR 160.46 0.00085829 58849000 7651.7 6482.1 11175.7 8715.1 6858.2 6121.3 5997.1 8505.2 4613.9 10315.6 TRUE FALSE 7758.847408 7189.837599 8354.256316 8156.152493 7792.40295 7206.826608 7135.018418 7782.630172 5057.08571 8213.275058 0.944671566 0.875392282 1.017165048 0.993045093 0.948757091 0.877460764 0.868717822 0.947567215 0.615720973 1 13.0037419 -7.377363152 2.245018165 0.852504359 0.958114275 0.183731419 0.099441457 0.537888002 5.323414105 0.039402541 0.033626731 4.19E-08 7.377363152 0.105609916 GKEGTHATCASEEGGTESSESGSSLQPLSADSTPDVNQS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 GKEGTHATCASEEGGTESSESGSSLQPLSADSTPDVNQSPR 41 1 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 GKEGTHATCASEEGGTESSESGSSLQPLS(0.001)ADS(0.002)T(0.002)PDVNQS(0.995)PR;GKEGTHATCASEEGGTESSESGSSLQPLSADS(0.001)T(0.001)PDVNQS(0.998)PR;GKEGTHATCASEEGGTESSESGSSLQPLSADS(0.001)T(0.001)PDVNQS(0.997)PR 106.55 1.33E-27 65412000 2012.07 1992.59 2932.98 2349.82 1826.85 1638.89 1712.12 2442.66 2165.62 2513.24 TRUE FALSE 2040.245188 2210.147715 2192.512924 2199.113063 2075.697899 1929.52413 2036.985832 2235.140786 2373.637477 2001.040308 1.019592249 1.104499347 1.095686536 1.09898489 1.037309389 0.964260501 1.017963418 1.116989386 1.186201731 1 10.96653451 -11.18034178 3.552782097 0.999916092 1.069416347 0.112246775 0.059929719 10383358.36 14537482.89 9109.851565 0.016795777 6.60E-12 11.18034178 0.069500255 GKELSDQATAS(ph)PIVAR ddPTM_K562_Paclitaxel_30min_R1 2 GKELSDQATASPIVAR 16 1 Q5JSH3-4;Q5JSH3-2;Q5JSH3 Q5JSH3-4 WDR44 WD repeat-containing protein 44 1 GKELSDQAT(0.002)AS(0.998)PIVAR;GKELSDQAT(0.061)AS(0.939)PIVAR 154.34 2.09E-07 88713000 7005 6607.9 11590 8001.8 6182.9 6174.1 5730.5 8614 5792.8 9410.7 TRUE FALSE 7103.091612 7329.372868 8663.961157 7488.600363 7025.115657 7268.989946 6817.83246 7882.186933 6349.224323 7492.794174 0.947989688 0.978189538 1.156305773 0.999440287 0.937582895 0.970130739 0.909918557 1.051968965 0.847377384 1 12.87128811 -6.532538878 13.97329385 0.95544685 1.031779179 0.183753408 0.071405518 1.735580201 2503.705021 0.020671315 0.026951692 2.93E-07 6.532538878 0.076332329 GKGFSVVADT(ph)PELQR ddPTM_K562_Paclitaxel_30min_R1 1 GKGFSVVADTPELQR 15 1 Q14847;Q14847-2;C9J9W2;Q14847-3 Q14847 LASP1 LIM and SH3 domain protein 1 1 GKGFS(0.019)VVADT(0.981)PELQR 80.508 0.031155 0 804.55 760.22 1072.8 1125.3 554.43 595.07 540.17 804.8 925.01 927.7 TRUE FALSE 815.8161822 843.2233905 801.9583718 1053.128295 629.9527526 700.5973093 642.6644376 736.4272166 1013.861344 738.6342308 1.10449279 1.141598041 1.085731392 1.425777808 0.852861574 0.948503711 0.870071289 0.997012034 1.372616244 1 9.528716313 -6.783817207 24.99998863 0.996939135 1.178580923 0.235003691 0.160289364 365.5937306 408430.8117 0.050886224 0.057741977 1.65E-07 6.783817207 0.181641788 GKIEVLDS(ph)PASK ddPTM_K562_Paclitaxel_30min_R1 1 GKIEVLDSPASK 12 1 Q8N5I9 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 1 GKIEVLDS(0.772)PAS(0.228)K 102.36 0.0061924 31511000 3043 2416.2 5029.3 3090.7 2431.7 1989.8 1687.5 3179.4 3034.9 4355.6 TRUE FALSE 3085.611388 2680.008887 3759.591013 2892.476335 2762.938709 2342.663092 2007.694316 2909.290125 3326.415705 3467.926329 0.889756902 0.772798679 1.084103483 0.834065104 0.796712054 0.675522739 0.578932228 0.838913474 0.959194455 1 11.75985754 -5.20849258 19.58195994 0.825905524 0.889762132 0.005677127 0.142218209 15345.19305 5672794.021 0.037619238 18.02643761 6.19E-06 5.20849258 0.063856608 GKLS(ph)AEENPDDSEVPSSSGINSTK ddPTM_K562_Paclitaxel_30min_R1 2 GKLSAEENPDDSEVPSSSGINSTK 24 1 A0A494C1S7;Q9Y5Q9-2;Q9Y5Q9 A0A494C1S7 GTF3C3 General transcription factor 3C polypeptide 3 1 GKLS(1)AEENPDDSEVPSSSGINSTK;GKLS(1)AEENPDDSEVPSSSGINSTK 154.27 1.82E-25 137120000 4030.6 2651.4 9023.8 4496.6 3092 2829.89 2550.37 4495.7 4518.7 5033.3 TRUE FALSE 4087.040835 2940.888818 6745.630085 4208.208202 3513.182748 3331.731258 3034.289394 4113.762224 4952.741325 4007.510697 1.019845272 0.733844284 1.683246932 1.050080342 0.876649625 0.831371769 0.757150666 1.026513099 1.23586478 1 11.96849066 GKVEAAGPGGESEPTGSGGTLAHT(ph)PRR ddPTM_K562_Paclitaxel_30min_R1 1 GKVEAAGPGGESEPTGSGGTLAHTPRR 27 2 A0A669KBI7;Q9UMN6;A0A669KAX8 A0A669KBI7 KMT2B Histone-lysine N-methyltransferase 2B 1 GKVEAAGPGGESEPT(0.002)GS(0.009)GGT(0.009)LAHT(0.979)PRR 68.368 0.0080202 5546200 691.15 878.83 1433.6 1032.2 862.77 946.41 556.94 754.7 466.31 1289.8 TRUE FALSE 700.8282324 974.7836314 1071.669949 965.999312 980.2938808 1114.242525 662.6164576 690.5835243 511.101159 1026.938052 0.682444507 0.949213664 1.043558516 0.94065977 0.954579372 1.085014352 0.645235081 0.672468532 0.497694246 1 10.00413344 -7.775736957 24.99875909 0.676555091 0.947928269 0.361399073 0.153663144 231.8293767 405340.8507 0.062099164 0.042087358 1.68E-08 7.775736957 0.271373178 GLAGPPAS(ph)PGK ddPTM_K562_Paclitaxel_30min_R1 2 GLAGPPASPGK 11 0 Q9P206;Q9P206-3;Q9P206-2 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 1 GLAGPPAS(1)PGK;GLAGPPAS(1)PGK 129.34 0.0010595 27866000 6925 6246.1 10113.4 7678.5 6192.9 5564.7 5756.5 7984 3672.2 9542.1 TRUE FALSE 7021.971365 6928.070321 7560.147089 7186.035378 7036.477827 6551.521413 6848.765824 7305.709365 4024.931218 7597.414782 0.924257997 0.911898392 0.995094688 0.945852712 0.926167391 0.862335623 0.901460039 0.961604648 0.529776422 1 12.89129287 GLDIPEVDLVIQS(ph)SPPKDVESYIHR ddPTM_K562_Paclitaxel_30min_R1 1 GLDIPEVDLVIQSSPPKDVESYIHR 25 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 GLDIPEVDLVIQS(0.5)S(0.5)PPKDVESYIHR 96.633 2.30E-05 6559700 3108.7 2525.4 4690.3 2807.4 2664.3 2570.8 2558.5 3615.7 3441.7 4236.6 TRUE FALSE 3152.231391 2801.131712 3506.175756 2627.345929 3027.222767 3026.695284 3043.962019 3308.523717 3772.290663 3373.178594 0.934498813 0.830413106 1.039427845 0.778893218 0.89743922 0.897282844 0.902401676 0.980832655 1.118319282 1 11.71989299 -8.454895196 3.211166659 1.058996528 0.895588967 0.469749882 0.069063723 0.207661528 4.105238458 0.045362696 0.017620188 3.51E-09 8.454895196 -0.163407561 GLDIPEVDLVIQSSPPKDVESYIHR ddPTM_K562_Paclitaxel_30min_R1 1 GLDIPEVDLVIQSSPPKDVESYIHR 25 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 85.397 0.0001666 3725500 1527.9 1489.4 2118.6 1958.9 1353.2 1409.8 1506.4 1961 1692.5 2095.8 FALSE TRUE 1549.295314 1652.017729 1583.733227 1833.264922 1537.52875 1659.808235 1792.231536 1794.40081 1855.072187 1668.67481 0.928458502 0.990017779 0.949096384 1.098635223 0.92140706 0.994686458 1.07404482 1.075344818 1.111703836 1 10.70448712 -7.723533521 5.138510303 1.071933729 0.98126065 0.380231517 0.053000374 0.194343657 12.19713605 0.020599419 0.015297093 1.89E-08 7.723533521 -0.090673079 GLEGNANS(ph)PAHLR ddPTM_K562_Paclitaxel_30min_R1 2 GLEGNANSPAHLR 13 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 GLEGNANS(1)PAHLR;GLEGNANS(1)PAHLR 90.561 0.011769 13197800 2272.67 2646.27 3363 2822.9 1949.23 2015.34 2273.51 2877.9 1901.18 3010.2 TRUE FALSE 2304.494392 2935.198708 2513.969057 2641.851829 2214.748127 2372.732252 2704.896654 2633.404432 2083.796834 2396.719588 0.961520239 1.224673392 1.048920812 1.102278232 0.92407478 0.989991597 1.128582863 1.098753665 0.869437061 1 11.22684541 -6.681847689 25 1.012481682 1.09184176 0.151574027 0.092973504 64.41371995 20228.4511 0.027390946 0.035361552 2.08E-07 6.681847689 0.079360078 GLEPS(ph)PAAVAALPPEVR ddPTM_K562_Paclitaxel_30min_R1 2 GLEPSPAAVAALPPEVR 17 0 Q9P265 Q9P265 DIP2B Disco-interacting protein 2 homolog B 1 GLEPS(1)PAAVAALPPEVR;GLEPS(1)PAAVAALPPEVR 119.04 0.00025131 18176200 2121.4 2030.31 2588.7 1828.25 1756.84 1832.83 1872.32 2545.96 2218.84 2526.32 TRUE FALSE 2151.106145 2251.986112 1935.150668 1710.994228 1996.151352 2157.856666 2227.582946 2329.664807 2431.969496 2011.454597 1.069428138 1.119580882 0.962065299 0.850625329 0.992391951 1.072784178 1.107448783 1.158199051 1.2090601 1 10.97402346 -7.541238931 2.496255285 1.13332929 0.996088695 0.317076749 0.082297213 0.353250145 4.44437514 0.037843727 0.029236354 2.88E-08 7.541238931 -0.137240595 GLERNDS(ph)WGSFDLR ddPTM_K562_Paclitaxel_30min_R1 1 GLERNDSWGSFDLR 14 1 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 GLERNDS(0.968)WGS(0.032)FDLR 81.594 0.019945 23448000 3187 3243.4 3794.7 3254 3307.7 3290.8 3180.9 3167 12442 2918.1 TRUE FALSE 3231.627833 3597.52538 2836.681053 3045.303004 3758.26474 3874.377175 3784.45917 2897.943582 13637.10969 2323.389618 1.390910852 1.548395221 1.220923529 1.310715594 1.617578348 1.667553795 1.628852578 1.247291268 5.869488951 1 11.18201539 GLESTEAEMHIPSALEPS(ph)TSSSPR ddPTM_K562_Paclitaxel_30min_R1 1 GLESTEAEMHIPSALEPSTSSSPR 24 0 F5GYM4;Q9UQQ2 F5GYM4 SH2B3 SH2B adapter protein 3 1 GLESTEAEMHIPS(0.003)ALEPS(0.629)T(0.09)S(0.053)S(0.053)S(0.171)PR 117.15 4.63E-08 33972000 2153.8 2070.8 2393.3 2074.4 1973.7 1818.1 2249.3 2633 1681.5 2931.5 TRUE FALSE 2183.959845 2296.896947 1789.081815 1941.357269 2242.551355 2140.514508 2676.092933 2409.310215 1843.015588 2334.058691 0.935691915 0.984078488 0.766511066 0.831751693 0.960794758 0.917078271 1.146540549 1.032240631 0.789618357 1 11.18862512 -7.13038162 2.374810863 0.992215955 0.881561202 0.161417772 0.10114278 0.538814115 5.958231285 0.038897696 0.039110042 7.41E-08 7.13038162 -0.110654753 GLESTEAEMHIPSALEPSTS(ph)SSPR ddPTM_K562_Paclitaxel_30min_R1 1 GLESTEAEMHIPSALEPSTSSSPR 24 0 F5GYM4;Q9UQQ2 F5GYM4 SH2B3 SH2B adapter protein 3 1 GLESTEAEMHIPSALEPS(0.1)T(0.037)S(0.476)S(0.102)S(0.285)PR 135.03 4.12E-14 35526000 1726.2 1978.8 2376.4 2056.2 1676.3 1553.6 2268.6 2585.3 1460.8 2329.3 TRUE FALSE 1750.372126 2194.852076 1776.448429 1924.324535 1904.64044 1829.109146 2699.055007 2365.662628 1601.116367 1854.587381 0.94380677 1.183471913 0.957867204 1.037602517 1.026988784 0.986262047 1.455339896 1.27557356 0.863327543 1 10.85688253 GLEYLYLNVHDEDRDDQTR ddPTM_K562_Paclitaxel_30min_R1 4 GLEYLYLNVHDEDRDDQTR 19 1 Q9Y6G9;C9JGM7;C9JLW1 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 0 ;;; 116.35 0.00016151 63579700 11059.5 11685 11523.1 11906.5 11311.9 11023.1 12354 14087.8 9251.1 15075.8 FALSE TRUE 11214.36712 12960.80782 8613.950889 11142.87038 12852.77229 12977.89201 14698.10701 12890.95346 10139.70949 12003.34368 0.934270268 1.079766451 0.71762928 0.928313866 1.070765999 1.081189738 1.224501055 1.073946876 0.844740412 1 13.55114872 -6.735310685 6.335149322 1.063451781 0.911558849 0.225074146 0.120355809 0.251519258 32.55237677 0.03744094 0.047169463 1.84E-07 6.735310685 -0.151892933 GLFIIDDK ddPTM_K562_Paclitaxel_30min_R1 2 GLFIIDDK 8 0 A0A0A0MSI0;Q06830;A0A0A0MRQ5;H7C3T4;Q13162 A0A0A0MSI0 PRDX1;PRDX4 Peroxiredoxin-1;Peroxiredoxin-4 0 ; 136.16 0.00046355 11239100 5683.6 5596 9914.8 6851.3 5744.1 5753.4 5071.9 6771.3 5223.2 8321.6 FALSE TRUE 5763.187935 6206.990204 7411.686115 6411.888283 6526.543668 6773.684708 6034.266548 6196.0358 5724.911698 6625.653352 0.869829378 0.936811794 1.118634755 0.967736756 0.985041523 1.022342152 0.91074287 0.935158462 0.864052403 1 12.69384701 -7.775133294 24.94013249 0.922084957 0.986791543 0.140043629 0.067028983 429.5690029 782348.1126 0.02858909 0.019392546 1.68E-08 7.775133294 0.064706586 GLGACTLLGS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 GLGACTLLGSPR 12 0 K7ER53;O95644-8;O95644-11;O95644-3;O95644-10;O95644-2;O95644-5;O95644-4;O95644-6;O95644 K7ER53 NFATC1 "Nuclear factor of activated T-cells, cytoplasmic 1" 1 GLGACTLLGS(1)PR 123.28 0.0019069 21208000 1044.4 909.76 954.5 969 1217.3 961.97 1080.9 1173.5 717.04 1295.1 TRUE FALSE 1059.024822 1009.090673 713.5246699 906.8526771 1383.116869 1132.561873 1285.995132 1073.80385 785.9148958 1031.157909 1.027024875 0.978599557 0.691964503 0.879450828 1.341324017 1.098339898 1.247136953 1.041357333 0.762167355 1 10.01004957 GLGHPPS(ph)SPLLK ddPTM_K562_Paclitaxel_30min_R1 1 GLGHPPSSPLLK 12 0 M0QXA7;O95785-4;B9EGQ5;A0A669KBG4;A0A669KBH9;A0A2R8YFV2;A0A669KAV7;O95785-3;O95785 M0QXA7 WIZ Protein Wiz 1 GLGHPPS(0.582)S(0.418)PLLK 90.689 0.012869 31057000 4943 4375 7625.4 5167.3 4652.2 4420.2 3851.6 5742.1 3837.3 6820.3 TRUE FALSE 5012.21725 4852.677295 5700.27346 4835.892506 5285.908402 5204.060407 4582.420993 5254.272764 4205.889811 5430.319116 0.923006023 0.893626542 1.049712427 0.890535603 0.973406588 0.958334178 0.843858509 0.967580846 0.774519825 1 12.40682127 -7.728851139 24.99373902 0.893788132 0.948779351 0.110082344 0.071713278 400.0156605 306794.0143 0.025654347 0.019870343 1.87E-08 7.728851139 0.054991219 GLGHPPSS(ph)PLLK ddPTM_K562_Paclitaxel_30min_R1 1 GLGHPPSSPLLK 12 0 M0QXA7;O95785-4;B9EGQ5;A0A669KBG4;A0A669KBH9;A0A2R8YFV2;A0A669KAV7;O95785-3;O95785 M0QXA7 WIZ Protein Wiz 1 GLGHPPS(0.161)S(0.839)PLLK 146.16 0.00012644 27614000 2783.1 2812.7 4731 3212.1 2447.3 2457.1 2100.3 3211 2330.8 3585.3 TRUE FALSE 2822.071987 3119.800098 3536.600538 3006.090283 2780.663693 2892.832186 2498.820961 2938.205508 2554.683754 2854.613892 0.988600243 1.092897399 1.238906791 1.053063705 0.9740945 1.013388253 0.875362152 1.029282985 0.894931452 1 11.47907991 -6.652954108 3.694844814 0.963367513 1.110638066 0.439716369 0.072709483 0.210001268 5.465637571 0.022275591 0.029180709 2.22E-07 6.652954108 0.147270553 GLGLGANLTEAQALT(ph)PTGPSR ddPTM_K562_Paclitaxel_30min_R1 2 GLGLGANLTEAQALTPTGPSR 21 0 Q92917 Q92917 GPKOW G patch domain and KOW motifs-containing protein 1 GLGLGANLTEAQALT(0.851)PT(0.113)GPS(0.036)R;GLGLGANLTEAQALT(0.827)PT(0.11)GPS(0.063)R 167.72 6.50E-55 6259000 4860.4 4888.9 4737.8 3694.8 4019.7 4570.3 4435.5 5383.8 4143.9 5218.9 TRUE FALSE 4928.460596 5422.686635 3541.683794 3457.832065 4567.251194 5380.778535 5277.11297 4926.412585 4541.94011 4155.285315 1.186070323 1.305009458 0.852332277 0.832152741 1.099142621 1.294923965 1.269976083 1.185577454 1.093051323 1 12.02073183 -7.006604171 24.92037979 1.187789266 1.03845823 0.123818532 0.152486461 578.7863127 2184020.655 0.052373728 0.057322685 9.85E-08 7.006604171 -0.149331036 GLGPPS(ph)PPAPPR ddPTM_K562_Paclitaxel_30min_R1 1 GLGPPSPPAPPR 12 0 Q13425;A0A140TA73;Q13425-2 Q13425 SNTB2 Beta-2-syntrophin 1 GLGPPS(1)PPAPPR 138.2 0.00013285 80490000 1345.6 1269.4 1550.3 1102.2 1100.4 1028.2 917.71 1202.5 765.02 1375.5 TRUE FALSE 1364.442552 1407.997385 1158.907591 1031.509825 1250.29311 1210.536833 1091.840682 1100.340119 838.5035892 1095.172345 1.245870166 1.28564001 1.058196545 0.941869862 1.141640506 1.105339118 0.996957864 1.004718686 0.765636197 1 10.09694221 -2 0.273743911 0.928309869 3.613888283 0.530336989 0.098153298 41.96497653 0.588330863 0.117047421 53.50277028 0.01 2 2.685578415 GLGS(ph)PTVHK ddPTM_K562_Paclitaxel_30min_R1 1 GLGSPTVHK 9 0 F8W9L4;P22607-4;P22607;P22607-2 F8W9L4 FGFR3 Fibroblast growth factor receptor;Fibroblast growth factor receptor 3 1 GLGS(0.943)PT(0.057)VHK 79.07 0.026264 12670000 6023.8 5941.3 9674.3 7079.1 5093.3 5398.7 5296.9 7103 3796.7 7912.3 TRUE FALSE 6108.151785 6589.991226 7231.903315 6625.078211 5787.09369 6356.083643 6301.959123 6499.555814 4161.389999 6299.768917 0.969583467 1.046068723 1.147963268 1.05163829 0.918619995 1.008939173 1.000347665 1.031713369 0.660562324 1 12.62108319 -8.719453545 24.9618356 0.830280672 1.023273443 0.397140162 0.094402335 115.3607001 68585.48465 0.061542403 0.023260374 1.91E-09 8.719453545 0.192992771 GLGS(ph)SPDLELLLR ddPTM_K562_Paclitaxel_30min_R1 3 GLGSSPDLELLLR 13 0 Q9NQQ7-2;Q9NQQ7;Q9NQQ7-3 Q9NQQ7-2 SLC35C2 Solute carrier family 35 member C2 1 GLGS(0.5)S(0.5)PDLELLLR;GLGS(0.5)S(0.5)PDLELLLR;GLGS(0.982)S(0.018)PDLELLLR 185.95 4.21E-23 191405000 3290.31 3210.93 3157.64 3030.81 2644.25 2715.76 3192.67 3756.3 3401.42 4575 TRUE FALSE 3336.384491 3561.510196 2360.454729 2836.427412 3004.441618 3197.361905 3798.462466 3437.178869 3728.141589 3642.612489 0.915931766 0.97773513 0.648011485 0.778679429 0.824804073 0.87776614 1.04278522 0.94360267 1.023480153 1 11.83075781 -7.602394657 4.337168404 0.9971131 0.826305979 0.486008365 0.084248166 0.208434952 7.419374564 0.035791857 0.02741104 2.50E-08 7.602394657 -0.170807121 GLGSS(ph)PDLELLLR ddPTM_K562_Paclitaxel_30min_R1 3 GLGSSPDLELLLR 13 0 Q9NQQ7-2;Q9NQQ7;Q9NQQ7-3 Q9NQQ7-2 SLC35C2 Solute carrier family 35 member C2 1 GLGS(0.104)S(0.896)PDLELLLR;GLGS(0.229)S(0.771)PDLELLLR;GLGS(0.286)S(0.714)PDLELLLR 151.7 4.55E-31 9243700 3386.67 3789.81 4065.76 3989.89 3357.04 3385.03 3953.29 4052.27 3762.06 4819.42 TRUE FALSE 3434.093829 4203.594272 3039.308603 3733.996313 3814.325683 3985.317542 4703.40614 3708.00437 4123.422672 3837.219559 0.894943272 1.095479216 0.792060125 0.973099469 0.994033733 1.038595129 1.225732869 0.966325829 1.074586067 1 11.9058456 -7.057762878 2.322736506 1.069378081 0.940100232 0.272396583 0.094599011 0.410770769 4.399140567 0.033777165 0.035544911 8.75E-08 7.057762878 -0.129277849 GLGTDEDS(ph)LIEIICSR ddPTM_K562_Paclitaxel_30min_R1 4 GLGTDEDSLIEIICSR 16 0 P07355-2;P07355;H0YN42;H0YMU9;H0YMD0;H0YN28;H0YM50;H0YNA0;H0YNP5;H0YL33;A6NMY6;H0YKS4;H0YMM1;H0YLE2;H0YN52 P07355-2 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 GLGT(0.031)DEDS(0.969)LIEIICSR;GLGTDEDS(1)LIEIICSR;GLGTDEDS(1)LIEIICSR;GLGTDEDS(1)LIEIICSR 197.17 6.62E-13 62409100 5844.42 5189.04 7005.08 5938.19 5658.29 5531.98 5505.81 6628.32 6153.11 6874.3 TRUE FALSE 5926.259912 5755.596935 5236.560916 5557.341072 6429.044894 6512.99898 6550.508705 6065.202843 6744.143708 5473.313887 1.082755353 1.051574431 0.956744127 1.015352159 1.174616517 1.189955321 1.196808522 1.108140876 1.232186541 1 12.41819888 -6.759767658 24.99967936 1.160001412 1.023399748 0.446303538 0.066926007 36.90344952 551862.79 0.019379017 0.023714953 1.74E-07 6.759767658 -0.136601665 GLGTDEDSLIEIICSR ddPTM_K562_Paclitaxel_30min_R1 2 GLGTDEDSLIEIICSR 16 0 P07355-2;P07355;H0YN42;H0YMU9;H0YMD0;H0YN28;H0YM50;H0YNA0;H0YNP5;H0YL33;A6NMY6;H0YKS4;H0YMM1;H0YLE2;H0YN52 P07355-2 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 0 ; 302.87 5.15E-201 29063000 2018.91 1602.73 2018.74 2049.09 1771.42 1691.09 1656.61 2020.08 1710.07 2073.6 FALSE TRUE 2047.180969 1777.721481 1509.08412 1917.670539 2012.717394 1990.981067 1970.943099 1848.461595 1874.329864 1650.999182 1.23996486 1.076754914 0.914042924 1.161521193 1.219090486 1.205924927 1.193788053 1.119601763 1.135270014 1 10.68912369 -5.246642106 23.42461958 1.121623507 1.239965065 0.141465972 0.091373723 2578.539986 4081758.77 0.024573989 0.49372212 5.67E-06 5.246642106 0.118341558 GLKEGMNPSYDEY(ph)ADSDEDQHDAYLER ddPTM_K562_Paclitaxel_30min_R1 2 GLKEGMNPSYDEYADSDEDQHDAYLER 27 1 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 1 GLKEGMNPS(0.056)Y(0.05)DEY(0.863)ADS(0.031)DEDQHDAYLER;GLKEGMNPS(0.021)Y(0.019)DEY(0.601)ADS(0.344)DEDQHDAY(0.016)LER 55.588 0.0036471 53740000 1171.16 1149.63 2442.92 1896.51 1458.98 1256.64 1244.96 1696.62 1966.33 1909.94 TRUE FALSE 1187.559853 1275.150491 1826.174632 1774.876337 1657.717777 1479.48746 1481.184661 1552.481541 2155.204782 1520.69318 0.780933241 0.838532393 1.200883029 1.167149535 1.090106669 0.972903331 0.974019402 1.020903863 1.417251561 1 10.57051338 -5.676539215 6.316551315 1.097982096 0.799009941 0.45929805 0.128421347 0.186886838 11.05175675 0.033578642 0.090535476 2.11E-06 5.676539215 -0.298972154 GLKEGMNPSYDEYADS(ph)DEDQHDAYLER ddPTM_K562_Paclitaxel_30min_R1 6 GLKEGMNPSYDEYADSDEDQHDAYLER 27 1 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 1 GLKEGMNPSYDEY(0.001)ADS(0.999)DEDQHDAYLER;GLKEGMNPSYDEY(0.002)ADS(0.998)DEDQHDAYLER;GLKEGMNPSY(0.001)DEY(0.174)ADS(0.825)DEDQHDAYLER;GLKEGMNPSYDEY(0.006)ADS(0.994)DEDQHDAYLER;GLKEGMNPSYDEYADS(1)DEDQHDAYLER;GLKEGMNPSYDEY(0.004)ADS(0.996)DEDQHDAYLER 137.86 2.33E-19 1846289000 12420.24 11450.56 18071.45 12800.54 10404.32 9996.61 9690.26 14273.41 16541.07 16929.8 TRUE FALSE 12594.16168 12700.77086 13509.08894 11979.57066 11821.56453 11769.36842 11528.93625 13060.79473 18129.91368 13479.49747 0.934319822 0.94222881 1.002195295 0.888725317 0.877003357 0.873131098 0.855294218 0.968937808 1.344999228 1 13.71847909 -8.58957849 8.255763378 1.170585626 0.911632716 0.585545754 0.086942412 0.173299801 18.96204688 0.055854309 0.020923112 2.57E-09 8.58957849 -0.25895291 GLLAQGLRPES(ph)PPPAGPLLNGAPAGESPQPK ddPTM_K562_Paclitaxel_30min_R1 2 GLLAQGLRPESPPPAGPLLNGAPAGESPQPK 31 1 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 GLLAQGLRPES(0.999)PPPAGPLLNGAPAGES(0.001)PQPK;GLLAQGLRPES(1)PPPAGPLLNGAPAGESPQPK 86.641 1.03E-07 61908000 1710.45 1432.2 2673.7 1934.55 1591.09 1640.48 1569.54 2078.5 2231.25 2495 TRUE FALSE 1734.401577 1588.572439 1998.691367 1810.476622 1807.823395 1931.396095 1867.352021 1901.918451 2445.571532 1986.51763 0.873086426 0.79967699 1.00612818 0.911382106 0.910046489 0.972252179 0.940012811 0.957413326 1.231084736 1 10.95602588 -8.609383116 7.040103361 1.113716101 0.919026095 0.532809158 0.073580933 0.166077156 11.26277178 0.049504977 0.018347717 2.46E-09 8.609383116 -0.194690006 GLLASDLNTDGDMRVT(ph)PEPGAGPTQGLLR ddPTM_K562_Paclitaxel_30min_R1 4 GLLASDLNTDGDMRVTPEPGAGPTQGLLR 29 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9;V9GYX5;C9JVY3;V9GY85;H7C3H1 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 GLLAS(0.006)DLNT(0.022)DGDMRVT(0.969)PEPGAGPT(0.003)QGLLR;GLLAS(0.041)DLNT(0.182)DGDMRVT(0.77)PEPGAGPT(0.007)QGLLR;GLLASDLNT(0.023)DGDMRVT(0.975)PEPGAGPT(0.002)QGLLR;GLLASDLNT(0.003)DGDMRVT(0.996)PEPGAGPT(0.001)QGLLR 82.381 1.81E-05 927710000 10090.7 9153.3 9976.6 10361.3 9005.3 9123.6 9679.4 11092 9851.1 11850.3 TRUE FALSE 10232.00093 10152.68825 7457.883941 9696.772593 10231.97432 10741.54236 11516.01562 10149.66537 10797.34217 9435.202355 1.084449548 1.076043509 0.790431796 1.027722801 1.084446728 1.138453841 1.220537217 1.075723125 1.144367843 1 13.20383774 -6.779028145 3.192494272 1.124812164 0.982624961 0.27950862 0.092156784 0.300322063 6.335484462 0.030109972 0.037016352 1.66E-07 6.779028145 -0.142187203 GLLEFEHQR ddPTM_K562_Paclitaxel_30min_R1 2 GLLEFEHQR 9 0 F5H6X6;Q14697;Q14697-2;E9PKU7;E9PNH1 F5H6X6 GANAB Neutral alpha-glucosidase AB 0 ; 177.7 0.00022618 32013000 10225.4 10699.6 9952.2 10669.4 9054.4 8977.8 10511.9 11759.2 10902.1 12130.7 FALSE TRUE 10368.58715 11867.81851 7439.644023 9985.112438 10287.76257 10569.88678 12506.47815 10760.18256 11949.29542 9658.456681 1.073524217 1.228748951 0.770272546 1.033820699 1.065155947 1.094366018 1.294873349 1.114068522 1.237184761 1 13.23757696 -7.386818699 2.971432381 1.172428832 1.028798844 0.172015231 0.127988367 0.44269622 7.494013587 0.049339743 0.042426902 4.10E-08 7.386818699 -0.143629988 GLLS(ph)PPMGQSGLR ddPTM_K562_Paclitaxel_30min_R1 1 GLLSPPMGQSGLR 13 0 A0A087WZX0;Q86UU0-3;Q86UU0-4;Q86UU0-2;Q86UU0 A0A087WZX0 BCL9L B-cell CLL/lymphoma 9-like protein 1 GLLS(0.994)PPMGQS(0.006)GLR 83.087 0.027204 15272000 2207.8 1857.9 2215.1 2494 1687 1751.6 1841.9 2455.2 1887 2667.9 TRUE FALSE 2238.716012 2060.751805 1655.870609 2334.046003 1916.797961 2062.221666 2191.39091 2246.615435 2068.254781 2124.180516 1.053919851 0.97013968 0.779533847 1.09879833 0.90237056 0.970831646 1.031640623 1.05763866 0.973671854 1 11.05269066 -7.670154657 5.327784475 1.020333398 0.957117831 0.088710795 0.082648613 0.482186563 21.98766034 0.031966987 0.024347853 2.14E-08 7.670154657 -0.063215567 GLLSNHT(ph)GS(ph)PRSPSTTYLHTPTPSEDAAIPSK ddPTM_K562_Paclitaxel_30min_R1 1 GLLSNHTGSPRSPSTTYLHTPTPSEDAAIPSK 32 1 Q13111 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 2 GLLS(0.039)NHT(0.455)GS(0.386)PRS(0.209)PS(0.209)T(0.108)T(0.108)Y(0.1)LHT(0.321)PT(0.03)PS(0.035)EDAAIPSK 53.895 0.0021733 19366000 1446.6 1362.2 2422.3 1641.5 1422.6 1714.3 1574.3 1852.6 1785.4 2646.3 TRUE FALSE 1466.856863 1510.929603 1810.760406 1536.221537 1616.382205 2018.307035 1873.015207 1695.210066 1956.895647 2106.982607 0.696188406 0.717105873 0.85940928 0.729109738 0.767154982 0.957913477 0.888956178 0.80456766 0.928766873 1 11.04096269 -7.200989637 7.664244992 0.902009349 0.755730822 0.620118592 0.063018537 0.22956192 26.28147656 0.021115015 0.021082957 6.30E-08 7.200989637 -0.146278527 GLLSNHT(ph)GSPRSPSTTYLHT(ph)PTPSEDAAIPSK ddPTM_K562_Paclitaxel_30min_R1 1 GLLSNHTGSPRSPSTTYLHTPTPSEDAAIPSK 32 1 Q13111 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 2 GLLS(0.066)NHT(0.312)GS(0.201)PRS(0.23)PS(0.23)T(0.15)T(0.15)Y(0.161)LHT(0.458)PT(0.032)PS(0.011)EDAAIPS(0.001)K 42.367 0.020416 70479000 2649.6 2585.5 4166.2 2525.6 2648.4 2750.4 2104.5 3204.6 2705.3 3644.4 TRUE FALSE 2686.702575 2867.793634 3114.391283 2363.61932 3009.156918 3238.144822 2503.817889 2932.349228 2965.156153 2901.66928 0.925916194 0.988325463 1.073310217 0.814572266 1.03704338 1.115959302 0.862888788 1.010573206 1.021879431 1 11.50266738 GLLSNHTGS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 GLLSNHTGSPR 11 0 Q13111 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 GLLSNHT(0.059)GS(0.941)PR;GLLSNHT(0.082)GS(0.918)PR;GLLSNHT(0.015)GS(0.985)PR;GLLSNHT(0.029)GS(0.971)PR 115.12 0.0031517 244752000 16436.5 16525.8 18066 17890.7 16878.7 15905.9 16397.3 17480.5 15181.9 17686.7 TRUE FALSE 16666.66171 18330.14273 13505.01486 16743.27058 19177.8647 18726.58804 19508.60208 15995.42242 16640.18933 14082.14083 1.183531816 1.301658814 0.959017171 1.188971959 1.361857187 1.32981116 1.385343486 1.135865818 1.181651961 1 13.78157906 -9.137283194 1.61657133 1.002634433 1.237700935 0.258282414 0.118891588 0.869314447 4.65055821 0.122362204 0.035303816 7.29E-10 9.137283194 0.235066502 GLLTDS(ph)PAATVLAEAR ddPTM_K562_Paclitaxel_30min_R1 2 GLLTDSPAATVLAEAR 16 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 GLLT(0.001)DS(0.969)PAAT(0.03)VLAEAR;GLLT(0.022)DS(0.884)PAAT(0.094)VLAEAR 218.12 2.65E-23 46211000 4470.1 4241.6 4541.3 4087.7 3417.1 3347.9 3561.9 4306 3463.5 4805.2 TRUE FALSE 4532.695191 4704.712232 3394.792649 3825.533218 3882.566872 3941.603058 4237.751931 3940.178423 3796.18465 3825.897602 1.184740331 1.229701555 0.887319265 0.999904758 1.014812019 1.030242695 1.107649072 1.029870329 0.99223373 1 11.90158255 -5.74080529 24.9970199 1.013163367 1.207221116 0.700359172 0.052091984 138.1815102 167396.501 0.013985441 0.03691307 1.82E-06 5.74080529 0.19405775 GLLYDS(ph)DEEDEERPAR ddPTM_K562_Paclitaxel_30min_R1 10 GLLYDSDEEDEERPAR 16 1 P49736 P49736 MCM2 DNA replication licensing factor MCM2 1 GLLY(0.001)DS(0.999)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR;GLLYDS(1)DEEDEERPAR 263.56 8.95E-94 16711544300 20909.74 19807.24 24325.24 22788.98 19596.3 19395.3 18878.42 21678.85 21078.84 24096.64 TRUE FALSE 21202.54087 21969.86145 18184.03231 21327.39682 22265.64783 22834.78413 22460.50164 19837.09638 23103.55676 19185.73154 1.105120273 1.145114608 0.947789365 1.111628023 1.160531606 1.190196166 1.170687789 1.033950482 1.204205152 1 14.22774615 -6.510475635 24.69110779 1.133895811 1.066550399 0.105309426 0.077367667 1034.791685 2059980.32 0.021793689 0.030513791 3.09E-07 6.510475635 -0.067345412 GLLYDS(ph)DEEDEERPARK ddPTM_K562_Paclitaxel_30min_R1 3 GLLYDSDEEDEERPARK 17 2 P49736 P49736 MCM2 DNA replication licensing factor MCM2 1 GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK;GLLYDS(1)DEEDEERPARK 83.792 0.0056961 1102780000 6447.5 5173 10302.4 6443.6 5270.9 5247.8 4464.1 6718.6 6130.2 7454.5 TRUE FALSE 6537.784892 5737.805634 7701.431702 6030.336336 5988.885817 6178.423647 5311.139671 6147.812994 6719.0331 5935.268808 1.10151454 0.966730542 1.297570835 1.016017392 1.009033628 1.040967789 0.894843998 1.035810372 1.13205203 1 12.53509766 -6.442141639 25 1.015206053 1.114813956 0.207782419 0.092197181 166.727641 51625.02106 0.025877956 0.038383205 3.61E-07 6.442141639 0.099607903 GLNPDGTPALSTLGGFS(ph)PASKPSS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 GLNPDGTPALSTLGGFSPASKPSSPR 26 1 Q9UK58-6;Q9UK58 Q9UK58-6 CCNL1 Cyclin-L1 2 GLNPDGTPALS(0.002)T(0.003)LGGFS(0.994)PAS(0.018)KPS(0.287)S(0.697)PR;GLNPDGTPALS(0.017)T(0.002)LGGFS(0.926)PAS(0.07)KPS(0.296)S(0.689)PR 85.404 7.91E-05 94997000 2677.5 2570.3 4902.2 3847.4 3095 2966.9 2363.6 3413.1 2138.4 3711.7 TRUE FALSE 2714.993261 2850.934046 3664.57898 3600.644984 3516.591399 3493.038058 2812.080761 3123.135851 2343.802875 2955.253503 0.918700632 0.964700336 1.240021872 1.218387858 1.189945768 1.181975778 0.951553144 1.056808104 0.793097063 1 11.52906618 -7.772755694 24.85587968 0.955098524 1.125193295 0.332484879 0.116748966 269.4039011 591729.8887 0.052389721 0.035677055 1.69E-08 7.772755694 0.170094772 GLNPDGTPALSTLGGFSPASKPS(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 1 GLNPDGTPALSTLGGFSPASKPSSPR 26 1 Q9UK58-6;Q9UK58 Q9UK58-6 CCNL1 Cyclin-L1 1 GLNPDGTPALSTLGGFS(0.004)PAS(0.015)KPS(0.75)S(0.231)PR 95.209 2.00E-05 20757000 570.7 588.95 1133.8 951.68 680.41 579.26 529.22 769.14 463.2 820.5 TRUE FALSE 578.6915608 653.2535527 847.5581673 890.6435044 773.0933614 681.9836278 629.6367323 703.7967562 507.6924296 653.2816496 0.885822464 0.999956991 1.297385542 1.363337704 1.183399782 1.043935075 0.963805937 1.077325158 0.777141727 1 9.351561305 -7.501423592 3.086480428 0.961366302 1.157475175 0.276362561 0.145100827 0.384875788 7.473125975 0.063304862 0.051041349 3.15E-08 7.501423592 0.196108873 GLNSQS(ph)SDDHLNKR ddPTM_K562_Paclitaxel_30min_R1 1 GLNSQSSDDHLNKR 14 1 Q96HA1;Q96HA1-2;Q96HA1-3;A8CG34-2;A8CG34 Q96HA1;A8CG34-2 POM121;POM121C Nuclear envelope pore membrane protein POM 121;Nuclear envelope pore membrane protein POM 121C 1 GLNS(0.012)QS(0.531)S(0.457)DDHLNKR 97.095 0.0052499 23985000 2018.5 1911.5 3146.7 2953.3 2345 2132.5 1699.7 2509 2007.5 2907.6 TRUE FALSE 2046.765228 2120.204034 2352.276667 2763.888556 2664.428701 2510.668933 2022.209202 2295.844789 2200.329345 2315.029524 0.884120572 0.915843194 1.016089273 1.193889118 1.150926445 1.084508386 0.873513353 0.991712963 0.950454118 1 11.17681488 -11.1064228 14.0108401 0.999993228 1.012048677 0 0.10326678 0 0 0.112097324 0.027187595 7.83E-12 11.1064228 0.012055449 GLNSSFET(ph)SPK ddPTM_K562_Paclitaxel_30min_R1 1 GLNSSFETSPK 11 0 M0QZ79;M0QXD7;M0R025;M0QYG0;M0QYA8;Q8IV63-2;Q8IV63 M0QZ79 VRK3 Inactive serine/threonine-protein kinase VRK3 1 GLNSSFET(0.5)S(0.5)PK 130.15 0.0021729 32461000 5345.8 4994.9 8929 5945.9 5002.3 4488.9 3876.5 5323.2 4944.2 6632.3 TRUE FALSE 5420.657693 5540.260074 6674.763518 5564.556587 5683.69795 5284.943388 4612.045638 4870.960934 5419.112501 5280.633619 1.026516529 1.049165777 1.264008071 1.053766837 1.076328782 1.000816146 0.873388682 0.922419786 1.026223914 1 12.36649533 -7.294804913 2.510097398 0.948166417 1.10306707 0.448411914 0.07265905 0.265428245 3.300346451 0.028959903 0.0262043 5.07E-08 7.294804913 0.154900654 GLNSSFETS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 GLNSSFETSPK 11 0 M0QZ79;M0QXD7;M0R025;M0QYG0;M0QYA8;Q8IV63-2;Q8IV63 M0QZ79 VRK3 Inactive serine/threonine-protein kinase VRK3 1 GLNSSFET(0.07)S(0.93)PK 142.91 0.00049192 33433000 6070 4704.2 8267.1 6031.8 5162.4 4487.6 4110.4 5501.8 4597.4 6866.3 TRUE FALSE 6154.998728 5217.820465 6179.968359 5644.947345 5865.60628 5283.412851 4890.326942 5034.387749 5039.000812 5466.944291 1.125857225 0.954430883 1.130424608 1.032559881 1.07292227 0.966428881 0.894526573 0.920877821 0.921721632 1 12.41651896 -7.393371231 3.767378887 0.92777772 1.059185593 0.574949318 0.052927456 0.166443968 4.186500393 0.018395011 0.015919302 4.04E-08 7.393371231 0.131407873 GLNVIGASDQS(ph)PLQSPSNLR ddPTM_K562_Paclitaxel_30min_R1 1 GLNVIGASDQSPLQSPSNLR 20 0 B4DJX4;Q9HAU0-5;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;A0JP02;H0YGJ6 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 GLNVIGAS(0.004)DQS(0.996)PLQSPSNLR 184.97 3.18E-84 0 656.46 905.03 1125.2 1282.2 1278.7 1115.9 1215.2 1182.7 627.4 1025.8 TRUE FALSE 665.6524654 1003.844236 841.1293437 1199.965431 1452.880589 1313.789197 1445.777856 1082.222253 687.6645733 816.7413969 0.815010073 1.229084555 1.02986006 1.469210983 1.778874677 1.608574271 1.770178249 1.325048855 0.841961208 1 9.673735543 -6.261328518 24.98620212 1.452675874 1.045094842 0.230282789 0.302157403 13.8023664 3110418.985 0.086849592 0.139025365 5.48E-07 6.261328518 -0.407581032 GLPFYAGLS(ph)PAGK ddPTM_K562_Paclitaxel_30min_R1 1 GLPFYAGLSPAGK 13 0 Q8IWI9-3;Q8IWI9 Q8IWI9-3 MGA MAX gene-associated protein 1 GLPFYAGLS(1)PAGK 83.087 0.027204 19893000 1951.4 1669 3600.3 2386.8 2294.4 1844.3 1985.3 2776.4 1931.5 3132.4 TRUE FALSE 1978.725621 1851.227064 2691.359737 2233.721331 2606.936125 2171.36071 2362.000311 2540.52749 2117.029205 2494.015161 0.793389572 0.742267767 1.079127256 0.895632619 1.045276775 0.870628513 0.947067343 1.018649578 0.84884376 1 11.28425452 -5.743118362 24.99956072 0.960461876 0.767828527 0.537658484 0.072416685 172.0772738 234800.835 0.017089102 0.045028811 1.81E-06 5.743118362 -0.192633349 GLPLGSAVS(ph)S(ph)PVLFSPVGR ddPTM_K562_Paclitaxel_30min_R1 1 GLPLGSAVSSPVLFSPVGR 19 0 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 2 GLPLGSAVS(0.803)S(0.803)PVLFS(0.393)PVGR 113.61 0.0014123 12099000 2019.3 2132.6 2293.6 2250.6 2038.6 2190.3 1636.5 2281.7 2174.2 2518.8 TRUE FALSE 2047.57643 2365.44448 1714.552313 2106.256589 2316.291834 2578.718952 1947.017332 2087.855343 2383.041625 2005.467177 1.020997229 1.179497978 0.854939105 1.050257323 1.154988653 1.285844506 0.970854748 1.041081782 1.188272564 1 10.96972264 -6.542081355 16.20983219 1.110282525 1.02091799 0.112284745 0.113133013 9.754246889 8230.921822 0.034040312 0.044017711 2.87E-07 6.542081355 -0.089364535 GLPLGSAVSS(ph)PVLFS(ph)PVGR ddPTM_K562_Paclitaxel_30min_R1 1 GLPLGSAVSSPVLFSPVGR 19 0 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 2 GLPLGSAVS(0.068)S(0.932)PVLFS(1)PVGR 216.53 1.64E-28 10760000 4049.2 4252 4285.5 4162.5 3929.8 3433.4 3694.5 4061 3309.3 4391.9 TRUE FALSE 4105.901293 4716.247739 3203.572523 3895.535881 4465.105292 4042.265283 4395.512088 3715.992702 3627.173051 3496.828369 1.174178673 1.348721539 0.91613662 1.114019754 1.276901472 1.155980465 1.256999665 1.062675176 1.037275116 1 11.77183127 -8.440508273 5.865787623 1.027956232 1.174456066 0.27242834 0.109239264 0.321901216 17.84255551 0.063859419 0.029576801 3.63E-09 8.440508273 0.146499834 GLPLGSAVSSPVLFS(ph)PVGR ddPTM_K562_Paclitaxel_30min_R1 2 GLPLGSAVSSPVLFSPVGR 19 0 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 1 GLPLGSAVSSPVLFS(1)PVGR;GLPLGSAVSSPVLFS(1)PVGR 141.3 8.03E-13 50611000 2453.88 2128.61 2312.56 2678.6 2414.87 2350.7 2428.2 3082.2 2324.99 2949.7 TRUE FALSE 2488.241891 2361.018838 1728.725627 2506.806585 2743.816178 2767.56364 2888.938274 2820.347872 2548.315678 2348.549521 1.059480274 1.00530937 0.736082255 1.067385023 1.168302458 1.178414002 1.230094681 1.200889249 1.085059376 1 11.1975543 -6.51047442 14.16066585 1.156072354 0.934277171 0.472791211 0.098762662 1.669680687 1904.075194 0.028537735 0.039853322 3.09E-07 6.51047442 -0.221795183 GLPLGSAVSSPVLFS(ph)PVGRR ddPTM_K562_Paclitaxel_30min_R1 2 GLPLGSAVSSPVLFSPVGRR 20 1 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 1 GLPLGSAVSSPVLFS(1)PVGRR;GLPLGSAVSSPVLFS(1)PVGRR 164.42 1.00E-12 32939000 1500.86 1341.34 1483.2 1599.75 1892.58 1445.44 1494.69 1510.4 1878.26 1803.61 TRUE FALSE 1521.876671 1487.792037 1108.747816 1497.149195 2150.381438 1701.768489 1778.299625 1382.082092 2058.675265 1436.033292 1.059778126 1.036042859 0.772090607 1.042558835 1.497445393 1.185048076 1.238341503 0.962430398 1.433584637 1 10.48787348 -6.535255158 24.92493534 1.221653404 0.954535549 0.334882675 0.170272402 237.9618188 479230.1244 0.048937724 0.063220521 2.92E-07 6.535255158 -0.267117855 GLPPS(ph)MER ddPTM_K562_Paclitaxel_30min_R1 7 GLPPSMER 8 0 P38159;P38159-2;H3BUY5 P38159 RBMX "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed" 1 GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER;GLPPS(1)MER 154.01 1.78E-06 1610999000 38405.8 35371.4 39631.8 39340.2 33770.9 30718.4 36729.9 38688.5 44453.1 40454.1 TRUE FALSE 38943.59969 39233.36907 29626.26193 36817.09565 38371.06833 36165.87693 43699.20678 35401.67044 48723.01888 32209.53221 1.209070639 1.218067025 0.919797957 1.143049685 1.191295424 1.122831486 1.356716592 1.099105389 1.512689428 1 14.97520009 -7.721012235 24.98771646 1.250386777 1.131115658 0.108502513 0.150934978 311.4573373 192508.9364 0.054987231 0.042592368 1.90E-08 7.721012235 -0.11927112 GLPPS(ph)VER ddPTM_K562_Paclitaxel_30min_R1 1 GLPPSVER 8 0 Q96E39 Q96E39 RBMXL1 "RNA binding motif protein, X-linked-like-1" 1 GLPPS(1)VER 83.869 0.025859 8796700 1089 1139.1 1296.4 1271.1 1024 902.12 910.69 1162.9 1120.1 1284.7 TRUE FALSE 1104.24936 1263.47079 969.1077863 1189.577335 1163.486136 1062.098316 1083.488673 1064.104386 1227.69061 1022.877435 1.07955198 1.235212301 0.947432951 1.16297153 1.137463881 1.038343676 1.059255622 1.040304879 1.200232372 1 9.998417571 -7.255863792 24.58386048 1.069623135 1.112973037 0.066534894 0.083913158 1235.409558 5447173.35 0.027321779 0.026545724 5.55E-08 7.255863792 0.043349902 GLPSDY(ph)GRPLSFPPPR ddPTM_K562_Paclitaxel_30min_R1 2 GLPSDYGRPLSFPPPR 16 1 O15357;O15357-2;H0YFZ4;H7BXR2 O15357 INPPL1 "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2" 1 GLPS(0.003)DY(0.972)GRPLS(0.024)FPPPR;GLPS(0.002)DY(0.966)GRPLS(0.032)FPPPR 108.66 0.0050142 58835000 2195.72 2096.52 2558.6 2132.3 2161.23 1779.75 2137.72 2156.51 2262.3 2516.4 TRUE FALSE 2226.466854 2325.425144 1912.649786 1995.543822 2455.626116 2095.363674 2543.34121 1973.301015 2479.604023 2003.556299 1.111257445 1.160648765 0.954627423 0.996000873 1.225633698 1.045822209 1.269413399 0.98489921 1.237601372 1 10.96834733 -6.742724382 24.99581815 1.129512267 1.05592001 0.097898581 0.106332577 594.3129818 793763.5089 0.030158598 0.0388659 1.81E-07 6.742724382 -0.073592257 GLPSTAS(ph)GRLR ddPTM_K562_Paclitaxel_30min_R1 4 GLPSTASGRLR 11 1 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 GLPST(0.007)AS(0.993)GRLR;GLPST(0.021)AS(0.979)GRLR;GLPST(0.035)AS(0.965)GRLR;GLPST(0.063)AS(0.937)GRLR 115.34 0.0029827 77791000 8872.1 7739.7 8156.1 7620.3 5986.7 7336.7 7880.2 7703.2 12388.8 9170.6 TRUE FALSE 8996.336773 8584.74662 6096.991682 7131.568065 6802.189896 8637.760733 9375.426813 7048.765078 13578.79959 7301.626686 1.232100347 1.175730695 0.83501827 0.976709488 0.931599243 1.182991285 1.28401892 0.96536914 1.859695131 1 12.83400219 -7.476052674 4.331617442 1.271407434 1.025090389 0.17886867 0.250358167 0.388543683 15.6849111 0.091043461 0.076640487 3.34E-08 7.476052674 -0.246317044 GLPTGDS(ph)PLGPMTHR ddPTM_K562_Paclitaxel_30min_R1 1 GLPTGDSPLGPMTHR 15 0 J3QQZ9;Q9NVS9-4;Q9NVS9-3;Q9NVS9 J3QQZ9 PNPO Pyridoxine-5-phosphate oxidase 1 GLPT(0.052)GDS(0.948)PLGPMTHR 104.89 0.0022482 9104900 1458.4 1372.3 1892.2 1584.9 1650.6 1423.6 1475.4 1731.8 1075.7 2328.2 TRUE FALSE 1478.8221 1522.132355 1414.490708 1483.251608 1875.439665 1676.055472 1755.349448 1584.67278 1179.025791 1853.711562 0.797762786 0.82112686 0.763058685 0.80015232 1.011721404 0.904161956 0.946937746 0.854864809 0.636035193 1 10.85620106 -6.569954409 24.99995072 0.889954709 0.79418125 0.186806571 0.09889385 217.5911641 115552.4384 0.029921513 0.038628518 2.69E-07 6.569954409 -0.095773459 GLPVTCEVAPHHLFLSHDDLER ddPTM_K562_Paclitaxel_30min_R1 1 GLPVTCEVAPHHLFLSHDDLER 22 0 P27708;F8VPD4 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 0 121.26 9.47E-07 9898800 2028.3 1597 1748.9 1937.1 1576.9 1712.7 2383.2 2609.9 2044.2 2736.6 FALSE TRUE 2056.702458 1771.365861 1307.368565 1812.863076 1791.700477 2016.423297 2835.399759 2388.172705 2240.554544 2178.879418 0.9439267 0.812971037 0.600018778 0.832016247 0.82230364 0.925440518 1.301311002 1.09605547 1.028305892 1 11.08937064 -7.542665664 5.549865395 1.11627289 0.799696813 0.632914617 0.108993494 0.111654025 10.67709623 0.043216273 0.034186475 2.87E-08 7.542665664 -0.316576077 GLPWSCS(ph)ADEVQR ddPTM_K562_Paclitaxel_30min_R1 1 GLPWSCSADEVQR 13 0 P31943;G8JLB6;E9PCY7;D6RFM3;D6RJ04;D6RDU3;D6RIU0;D6RIT2;E5RGV0;D6R9T0;D6RBM0;D6RAM1;D6RIH9;D6R9D3;D6RF17;D6RDL0;E7EN40;E7EQJ0 P31943;E7EQJ0 HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed" 1 GLPWS(0.274)CS(0.726)ADEVQR 111.88 0.0042045 16867000 684.85 686.92 911.93 987.34 757.98 487.21 624.3 757.31 824.76 802.91 TRUE FALSE 694.4400129 761.9202486 681.7019929 924.0164316 861.2297087 573.6098527 742.7576659 692.9717885 903.9818831 639.2765013 1.086290536 1.191847733 1.066364854 1.445409662 1.347194378 0.89727974 1.161872311 1.083993839 1.414070252 1 9.320296254 GLPWSCSADEVQR ddPTM_K562_Paclitaxel_30min_R1 1 GLPWSCSADEVQR 13 0 P31943;G8JLB6;E9PCY7;D6RFM3;D6RJ04;D6RDU3;D6RIU0;D6RIT2;E5RGV0;D6R9T0;D6RBM0;D6RAM1;D6RIH9;D6R9D3;D6RF17;D6RDL0;E7EN40;E7EQJ0 P31943;E7EQJ0 HNRNPH1 "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed" 0 187.16 5.93E-83 0 3340.5 2524.1 5263.9 3449.4 2428.2 2111.2 2602.5 3517.6 2974.2 3921.8 FALSE TRUE 3387.277306 2799.689774 3934.963342 3228.170923 2758.96195 2485.591677 3096.310789 3218.757924 3259.885199 3122.535007 1.084784413 0.89660797 1.260182298 1.033830178 0.883564778 0.796017233 0.991601626 1.030815641 1.043986758 1 11.60850203 -6.535683274 21.68834523 0.953353818 1.076278636 0.215064133 0.10660825 75.1395001 127268.5351 0.033031085 0.042696038 2.91E-07 6.535683274 0.122924818 GLQLT(ph)PGIGGMQQHFFDDEDR ddPTM_K562_Paclitaxel_30min_R1 2 GLQLTPGIGGMQQHFFDDEDR 21 0 P12270 P12270 TPR Nucleoprotein TPR 1 GLQLT(1)PGIGGMQQHFFDDEDR;GLQLT(1)PGIGGMQQHFFDDEDR 140.84 2.84E-16 69624000 4750.2 4531.1 4194.2 3867.5 3617.7 3344.5 4729.5 5847.6 1936.07 7317.9 TRUE FALSE 4816.717456 5025.820821 3135.322337 3619.45586 4110.491988 3937.600116 5626.897935 5350.80988 2122.038174 5826.507963 0.826690272 0.862578555 0.538113456 0.621204997 0.705481227 0.675807901 0.965741053 0.918356229 0.364204115 1 12.50841577 GLQLT(ph)PGIGGMQQHFFDDEDRTVPSTPTLVVPHR ddPTM_K562_Paclitaxel_30min_R1 2 GLQLTPGIGGMQQHFFDDEDRTVPSTPTLVVPHR 34 1 P12270 P12270 TPR Nucleoprotein TPR 1 GLQLT(0.998)PGIGGMQQHFFDDEDRT(0.001)VPS(0.001)T(0.001)PTLVVPHR;GLQLT(0.986)PGIGGMQQHFFDDEDRT(0.012)VPS(0.001)T(0.001)PTLVVPHR 72.389 3.48E-05 147159000 2569.75 2325.11 2074.1 1866.25 1966.58 1806.21 2243.32 2402.65 1195.63 3116.28 TRUE FALSE 2605.734428 2578.973373 1550.467803 1746.557078 2234.46149 2126.515983 2668.978259 2198.529886 1310.475604 2481.180425 1.050199494 1.03941388 0.624891196 0.703921835 0.900563888 0.857058181 1.075688907 0.88608223 0.528166187 1 11.27681093 -5.633798703 12.87698803 0.826897141 1.047454045 0.243015127 0.157124177 0.687699959 74.91384218 0.041292122 0.109286182 2.32E-06 5.633798703 0.220556904 GLQVDLQS(ph)DGAAAEDIVASEQSLGQK ddPTM_K562_Paclitaxel_30min_R1 2 GLQVDLQSDGAAAEDIVASEQSLGQK 26 0 A0A3B3ITP6;A0A3B3IS57;A0A3B3IU45;A0A3B3IT92;P33991 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 1 GLQVDLQS(1)DGAAAEDIVASEQSLGQK;GLQVDLQS(1)DGAAAEDIVASEQSLGQK 147.54 2.49E-26 35555000 4170.2 3538.3 5614.4 4046.4 3377.5 3193.8 3323.6 4684.1 4390.7 5167.9 TRUE FALSE 4228.595666 3924.62356 4196.975282 3786.882015 3837.572682 3760.175587 3954.23575 4286.156468 4812.446353 4114.679143 1.027685396 0.953810351 1.020000621 0.920334705 0.932654175 0.91384418 0.961007071 1.041674531 1.169579981 1 12.00656422 -8.393213074 3.763159053 1.090017764 0.958853614 0.483506111 0.052451701 0.186875329 4.630193661 0.031936843 0.013768516 4.04E-09 8.393213074 -0.13116415 GLRDSHS(ph)S(ph)EEDEASSQTDLSQTISKK ddPTM_K562_Paclitaxel_30min_R1 2 GLRDSHSSEEDEASSQTDLSQTISKK 26 2 A0A0A0MSK5;J3KN66;Q5JTV8-2;Q5JTV8;Q5JTV8-3;H0YDU3 A0A0A0MSK5;H0YDU3 TOR1AIP1 Torsin-1A-interacting protein 1 2 GLRDS(0.435)HS(0.765)S(0.765)EEDEAS(0.019)S(0.008)QT(0.008)DLSQTISKK;GLRDS(0.335)HS(0.783)S(0.783)EEDEAS(0.073)S(0.021)QT(0.003)DLSQTISKK 57.768 0.0037707 53894000 5915.7 4391.2 11235.4 6227.2 4392.8 4169.3 3600.3 5798.2 6412.7 8207.2 TRUE FALSE 5998.538051 4870.646066 8398.884312 5827.815264 4991.173731 4908.666815 4283.43813 5305.606719 7028.668488 6534.568135 0.917970083 0.745366177 1.285300595 0.891843982 0.763810802 0.751184579 0.655504395 0.811929206 1.075613314 1 12.67387618 -6.519051971 24.7187242 0.820381788 0.980701759 0.112367585 0.168745049 265.2304066 1713241.11 0.050350891 0.066540245 3.03E-07 6.519051971 0.160319971 GLS(ph)GEEEDDEPDCCNDER ddPTM_K562_Paclitaxel_30min_R1 1 GLSGEEEDDEPDCCNDER 18 0 A0A087WW12;A0A087WZ11;Q6P158-3;Q6P158-2;Q6P158 A0A087WW12 DHX57 Putative ATP-dependent RNA helicase DHX57 1 GLS(1)GEEEDDEPDCCNDER 209.23 1.78E-19 15629000 744.76 830.36 923.85 811.37 830.47 846.52 823.94 1376.1 473.83 1092.1 TRUE FALSE 755.1889378 921.0215129 690.6126415 759.3323598 943.594074 996.6384363 980.2783137 1259.191716 519.3434886 869.5294205 0.868503032 1.059218344 0.794237234 0.873268163 1.085177858 1.146181386 1.12736647 1.448130087 0.597269599 1 9.764091032 -6.770559014 20.44999829 1.096703178 0.902795476 0.129241814 0.205938896 37.0500704 83080.77297 0.061085032 0.070618948 1.70E-07 6.770559014 -0.193907702 GLS(ph)GPSGPGHMASR ddPTM_K562_Paclitaxel_30min_R1 1 GLSGPSGPGHMASR 14 0 Q14151 Q14151 SAFB2 Scaffold attachment factor B2 1 GLS(1)GPSGPGHMASR 97.352 0.0062128 6019900 551 498.71 596.24 581.25 638.56 476.89 568.37 654.48 535.9 573.35 TRUE FALSE 558.7157 553.1608443 445.7118378 543.9712266 725.5426829 561.4597456 676.2152404 598.8778389 587.3755895 456.5009553 1.223909158 1.211740825 0.976365619 1.19161027 1.58935633 1.229920199 1.481300822 1.311887373 1.286690822 1 8.834474069 -6.539629534 24.99325881 1.340979188 1.134646898 0.203142995 0.158977992 304.5540308 454412.0102 0.044403965 0.057339578 2.89E-07 6.539629534 -0.20633229 GLS(ph)GYS(ph)MLAIGIGTLIYGHWSIMK ddPTM_K562_Paclitaxel_30min_R1 1 GLSGYSMLAIGIGTLIYGHWSIMK 24 0 U3KQP3;B4DEZ3;K7EJE1;E7ENQ6;Q9P0J0;Q9P0J0-2 U3KQP3 NDUFA13 NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 13 2 GLS(0.556)GY(0.482)S(0.961)MLAIGIGTLIYGHWSIMK 50.232 0.026478 0 1390.4 1345.6 2667.6 1799.5 1466.4 1454.3 1075.9 2041.9 1755.5 2122.2 TRUE FALSE 1409.86989 1492.517159 1994.131388 1684.088124 1666.148506 1712.199686 1280.046408 1868.42785 1924.123619 1689.694475 0.834393383 0.883305935 1.180172757 0.996682033 0.986064955 1.0133191 0.757560865 1.105778516 1.138740552 1 10.72254669 -5.545129039 24.98563306 1.015261384 0.846621393 0.267815287 0.108917218 270.788975 304077.6222 0.028616358 0.075723667 2.85E-06 5.545129039 -0.168639991 GLS(ph)PAMS(ph)PALQR ddPTM_K562_Paclitaxel_30min_R1 2 GLSPAMSPALQR 12 0 Q96DF8 Q96DF8 DGCR14 Protein DGCR14 2 GLS(1)PAMS(1)PALQR;GLS(1)PAMS(1)PALQR 177.36 0.00070174 67339000 6557.7 6362.3 7721.8 7103.1 6097 5580.1 6111.4 7388.1 7161.9 7627.7 TRUE FALSE 6649.528032 7056.95743 5772.336088 6647.538958 6927.514623 6569.652387 7271.006246 6760.43479 7849.832495 6073.170553 1.094902238 1.161989009 0.950465006 1.09457472 1.140675132 1.081750023 1.197233995 1.113163994 1.292542738 1 12.56823417 -7.241452034 1.384898897 1.156497447 1.076216774 0.097285646 0.086729375 0.875815826 3.389947278 0.03899031 0.035801712 5.74E-08 7.241452034 -0.080280673 GLS(ph)PAMSPALQR ddPTM_K562_Paclitaxel_30min_R1 4 GLSPAMSPALQR 12 0 Q96DF8 Q96DF8 DGCR14 Protein DGCR14 1 GLS(1)PAMSPALQR;GLS(0.999)PAMS(0.001)PALQR;GLS(0.952)PAMS(0.048)PALQR;GLS(0.837)PAMS(0.163)PALQR 137.09 0.00022804 135147000 5144.84 5099.6 6042.98 5688.6 5293.51 5362.26 4860.37 5474.9 5609.63 5922.17 TRUE FALSE 5216.883633 5656.391574 4517.35496 5323.758657 6014.575682 6313.181521 5782.599835 5009.773072 6148.460026 4715.228503 1.106390418 1.199600734 0.958035217 1.129056344 1.27556399 1.338891958 1.226366831 1.062466658 1.303958021 1 12.20311197 -5.242187329 21.44307689 1.171006252 1.106389999 0.019573895 0.121990567 2997.692268 3338459.389 0.031351604 0.842636578 5.73E-06 5.242187329 -0.064616253 GLS(ph)SAGGGSPHREDAQPEHSASAR ddPTM_K562_Paclitaxel_30min_R1 1 GLSSAGGGSPHREDAQPEHSASAR 24 1 Q92994-9;Q92994-3;Q92994-7;Q92994-8;Q92994-5;Q92994 Q92994-9 BRF1 Transcription factor IIIB 90 kDa subunit 1 GLS(0.369)S(0.369)AGGGS(0.262)PHREDAQPEHSASAR 59.996 0.0063493 44533000 1786.9 1715.8 2086.3 2246.1 2092.5 2106 2157.2 2156.7 1905.6 2344.8 TRUE FALSE 1811.922113 1903.136846 1559.587762 2102.045199 2377.533926 2479.46953 2566.517439 1973.474873 2088.641394 1866.928473 0.97053644 1.019394623 0.83537628 1.125937726 1.273500276 1.328100978 1.374727246 1.057070424 1.118758123 1 10.86645094 -6.463154582 5.496665469 1.210307446 0.951309189 0.468382254 0.118173792 0.187566782 11.74755729 0.035310836 0.052031099 3.44E-07 6.463154582 -0.258998258 GLSAS(ph)LPDLDSENWIEVK ddPTM_K562_Paclitaxel_30min_R1 6 GLSASLPDLDSENWIEVK 18 0 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50;H0YBW1;H0YC73 Q6PKG0 LARP1 La-related protein 1 1 GLS(0.002)AS(0.998)LPDLDSENWIEVK;GLS(0.028)AS(0.971)LPDLDS(0.001)ENWIEVK;GLS(0.006)AS(0.994)LPDLDSENWIEVK;GLS(0.07)AS(0.93)LPDLDSENWIEVK;GLS(0.007)AS(0.993)LPDLDSENWIEVK;GLS(0.016)AS(0.983)LPDLDS(0.001)ENWIEVK 188.16 1.89E-14 1357040000 17844.071 14757.12 26248.149 18676.2 15071.915 14223.01 13748.49 18929.419 17003.06 21921.85 TRUE FALSE 18093.94305 16368.35227 19621.47915 17478.39212 17124.96499 16745.26112 16357.19421 17321.2467 18636.27988 17454.16494 1.036654753 0.937790626 1.124171751 1.001388046 0.981139175 0.959384834 0.937151348 0.992384727 1.067726812 1 14.09128371 -4.903612821 20.13373884 0.999219911 4.303487179 0.038386554 0.054679061 2144.20798 452163.053 0.013483839 3096.736481 1.25E-05 4.903612821 3.304267268 GLSAS(ph)LPDLDSENWIEVKK ddPTM_K562_Paclitaxel_30min_R1 2 GLSASLPDLDSENWIEVKK 19 1 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50;H0YBW1;H0YC73 Q6PKG0 LARP1 La-related protein 1 1 GLS(0.037)AS(0.953)LPDLDS(0.01)ENWIEVKK;GLS(0.186)AS(0.77)LPDLDS(0.044)ENWIEVKK 83.395 0.0029833 123438000 2430.12 2222.39 4911.6 2492.2 1950.83 1605.38 1496.17 1946.45 2901.02 2978.06 TRUE FALSE 2464.149178 2465.038056 3671.605834 2332.361447 2216.566074 1890.071602 1780.060447 1781.086923 3179.675933 2371.129737 1.039230009 1.039604884 1.548462649 0.983649865 0.934814337 0.797118594 0.750722501 0.751155407 1.340996186 1 11.21135889 -6.504213198 24.4508158 0.906449124 1.204467527 0.264223505 0.207731403 726.8104632 952080.7167 0.059454966 0.086413116 3.13E-07 6.504213198 0.298018402 GLSDHVS(ph)LDGQELGTR ddPTM_K562_Paclitaxel_30min_R1 2 GLSDHVSLDGQELGTR 16 0 Q7L8J4-2;Q7L8J4 Q7L8J4-2 SH3BP5L SH3 domain-binding protein 5-like 1 GLSDHVS(1)LDGQELGTR;GLS(0.003)DHVS(0.997)LDGQELGTR 108.12 0.0020462 115000000 9397.3 9295.2 9566.2 9162.8 8743.8 8161.2 9757.8 9956.6 9357.6 11163.9 TRUE FALSE 9528.891193 10310.08137 7151.094497 8575.139019 9934.853594 9608.474231 11609.29161 9110.724683 10256.43929 8888.691052 1.072024119 1.15990997 0.804516037 0.964724611 1.117695905 1.08097741 1.306074375 1.024979339 1.153875102 1 13.11775527 -6.773259158 23.26345711 1.123141953 0.99771074 0.188342174 0.114568537 153.9935602 303085.3815 0.036248132 0.041487915 1.69E-07 6.773259158 -0.125431213 GLSGELGTRSGET(ph)GR ddPTM_K562_Paclitaxel_30min_R1 1 GLSGELGTRSGETGR 15 1 Q96NG3 Q96NG3 TTC25 Tetratricopeptide repeat protein 25 1 GLS(0.001)GELGT(0.179)RS(0.179)GET(0.642)GR 96.866 0.029111 85833000 2487 2326.7 3792.6 3278.2 2917.6 2258.1 1744.4 2286.6 2136.6 1820.4 TRUE FALSE 2521.825673 2580.736974 2835.111224 3067.950925 3315.026515 2658.54233 2075.390794 2092.339057 2341.829977 1449.401481 1.739908305 1.780553565 1.956056525 2.116701939 2.287169262 1.834234589 1.431895042 1.443588326 1.615722081 1 10.50124156 -7.69984804 3.818849653 1.403721045 1.978806506 0.65877031 0.205747009 0.154505091 4.523363116 0.08877818 0.064934671 2.00E-08 7.69984804 0.575085461 GLSPEGLPGRSS(ph)PPEQIFHLVPSPEELANSLQHLEHEPVNR ddPTM_K562_Paclitaxel_30min_R1 1 GLSPEGLPGRSSPPEQIFHLVPSPEELANSLQHLEHEPVNR 41 1 F5GYM4;Q9UQQ2 F5GYM4 SH2B3 SH2B adapter protein 3 1 GLS(0.001)PEGLPGRS(0.387)S(0.612)PPEQIFHLVPSPEELANSLQHLEHEPVNR 86.359 1.69E-13 54624000 523.35 439.26 740.41 636.16 622.79 517.77 765.27 769.81 662.57 832.18 TRUE FALSE 530.6785147 487.2198923 553.4843382 595.3595449 707.6245419 609.5892396 910.4759875 704.4098355 726.2128089 662.5812592 0.800925935 0.73533606 0.835345598 0.898545705 1.067981522 0.920021856 1.374134832 1.06312973 1.096035843 1 9.371953588 -6.652173307 1.142663306 1.120214377 0.762693688 0.603267449 0.110350058 0.319558503 0.873766734 0.044430948 0.074523161 2.23E-07 6.652173307 -0.357520689 GLSPHCNGSDCGYS(ph)SSMEGSETGSR ddPTM_K562_Paclitaxel_30min_R1 1 GLSPHCNGSDCGYSSSMEGSETGSR 25 0 Q9H3C7 Q9H3C7 GGNBP2 Gametogenetin-binding protein 2 1 GLSPHCNGSDCGYS(0.492)S(0.492)S(0.016)MEGSETGSR 156.57 1.12E-25 15660000 2010.8 1552.1 1335.2 1381.6 1315.9 1396.2 1723.5 1615.8 2139.1 2127.9 TRUE FALSE 2038.957404 1721.563527 998.1122465 1292.99036 1495.147858 1643.796466 2050.525128 1478.527704 2344.570113 1694.232812 1.203469434 1.016131617 0.589123431 0.763171596 0.882492564 0.97023057 1.210297141 0.872682723 1.383853563 1 10.72641642 -7.537712614 4.454397189 1.106397009 0.877081731 0.229131772 0.193927007 0.317437476 15.63405558 0.077171469 0.061417936 2.90E-08 7.537712614 -0.229315279 GLSPHCNGSDCGYSS(ph)SMEGSETGSR ddPTM_K562_Paclitaxel_30min_R1 1 GLSPHCNGSDCGYSSSMEGSETGSR 25 0 Q9H3C7 Q9H3C7 GGNBP2 Gametogenetin-binding protein 2 1 GLSPHCNGSDCGYS(0.212)S(0.751)S(0.037)MEGSETGSR 157.62 1.04E-25 16622000 1614.7 1324.1 1228.5 1290.2 963.79 1059.3 1325.9 1507.6 1424.6 1321.6 TRUE FALSE 1637.310782 1468.669716 918.3499811 1207.452347 1095.074515 1247.151982 1577.482603 1379.51997 1561.439195 1052.257195 1.555998657 1.395732644 0.872742886 1.147487851 1.040690927 1.185215923 1.499141666 1.311010252 1.483895005 1 10.03927166 -7.672903292 15.18587259 1.349416824 1.184023637 0.065520712 0.215877439 2.742111594 462.6338507 0.084696251 0.065601429 2.12E-08 7.672903292 -0.165393187 GLSQNQQIPQNSVT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 GLSQNQQIPQNSVTPR 16 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 GLSQNQQIPQNS(0.145)VT(0.855)PR;GLSQNQQIPQNS(0.258)VT(0.742)PR;GLSQNQQIPQNS(0.005)VT(0.995)PR;GLSQNQQIPQNS(0.001)VT(0.999)PR 207.16 1.01E-16 64418000 10606.2 10569.8 12085.8 10869.7 9346 9511.4 10101.4 9828.3 9360.6 10481.1 TRUE FALSE 10754.71952 11723.84651 9034.590315 10172.56609 10619.08343 11198.11324 12018.08792 8993.324569 10259.72745 8345.046067 1.288754962 1.404886973 1.082629172 1.2189946 1.272501475 1.341887529 1.440146384 1.077684233 1.229439283 1 13.0267043 -9.02930313 1.246984791 1.00910286 1.280409411 0.358872978 0.110410079 0.575351043 2.003031546 0.10760383 0.03334004 9.35E-10 9.02930313 0.27130655 GLSS(ph)AGGGSPHREDAQPEHSASAR ddPTM_K562_Paclitaxel_30min_R1 1 GLSSAGGGSPHREDAQPEHSASAR 24 1 Q92994-9;Q92994-3;Q92994-7;Q92994-8;Q92994-5;Q92994 Q92994-9 BRF1 Transcription factor IIIB 90 kDa subunit 1 GLS(0.237)S(0.698)AGGGS(0.064)PHREDAQPEHSASAR 48.146 0.030726 3129700 141.86 138.15 242.65 124.24 199.95 196.49 44.96 236.01 190.84 212.39 TRUE FALSE 143.8464777 153.2336842 181.3900064 116.2718025 227.1865752 231.3347426 53.49092529 215.9594774 209.1710347 169.1048014 0.850635088 0.906146265 1.07264847 0.687572449 1.343466142 1.3679963 0.316318193 1.277074782 1.236931376 1 7.401773813 -6.750392748 24.99852214 1.079337515 0.894985916 0.106531329 0.297017288 627.995272 1421146.182 0.090445231 0.115646723 1.78E-07 6.750392748 -0.184351599 GLSTS(ph)LPDLDSEPWIEVK ddPTM_K562_Paclitaxel_30min_R1 1 GLSTSLPDLDSEPWIEVK 18 0 H0Y9K3;D6R9W6;D6RJB0;A0A3B3ISF0;Q659C4-9;Q659C4-2;Q659C4;Q659C4-4 H0Y9K3 LARP1B La-related protein 1B 1 GLST(0.002)S(0.998)LPDLDSEPWIEVK 260.56 2.01E-81 15465000 1583.6 1456.4 2593.8 2108.5 1412.8 1417.9 1222.7 2036.7 1651.9 1960.8 TRUE FALSE 1605.775286 1615.414677 1938.96311 1973.270247 1605.247279 1669.344657 1454.700942 1863.669622 1810.572376 1561.187884 1.028559921 1.034734316 1.241979348 1.26395437 1.028221712 1.069278512 0.931791079 1.193751016 1.159740218 1 10.60842846 GLSVT(ph)SEQINPHSTGAR ddPTM_K562_Paclitaxel_30min_R1 1 GLSVTSEQINPHSTGAR 17 0 Q9ULI0-2;Q9ULI0;H7BYF1 Q9ULI0-2 ATAD2B ATPase family AAA domain-containing protein 2B 1 GLS(0.033)VT(0.691)S(0.276)EQINPHSTGAR 99.603 0.0024302 11831000 1589.8 1272.6 1476.9 1431.8 1140.9 1159.4 1399.3 1585.1 1518 2100.5 TRUE FALSE 1612.062105 1411.546772 1104.038329 1339.970756 1296.309896 1365.003311 1664.80987 1450.435861 1663.810683 1672.416947 0.963911606 0.844016066 0.660145385 0.801218117 0.775111672 0.816186008 0.995451447 0.867269292 0.994853996 1 10.70771885 -7.710512615 7.439640005 0.953175791 0.802215729 0.475644258 0.07878166 0.212039545 25.81645975 0.031449572 0.024123951 1.95E-08 7.710512615 -0.150960061 GLSVTS(ph)EQINPHSTGAR ddPTM_K562_Paclitaxel_30min_R1 1 GLSVTSEQINPHSTGAR 17 0 Q9ULI0-2;Q9ULI0;H7BYF1 Q9ULI0-2 ATAD2B ATPase family AAA domain-containing protein 2B 1 GLS(0.004)VT(0.244)S(0.752)EQINPHSTGAR 101.48 0.0014948 9738700 1408.5 1092.7 1239.1 1276.1 1175.5 930.88 1396.6 1238.3 1127.5 1621 TRUE FALSE 1428.223346 1212.004681 926.27388 1194.256658 1335.623001 1095.958498 1661.597559 1133.098686 1235.801413 1290.63931 1.10660146 0.939073118 0.71768609 0.925321775 1.034853805 0.849159397 1.287422091 0.877935979 0.957511059 1 10.33387016 -6.657128461 6.428714118 1.00146564 0.906930338 0.066648833 0.141450493 0.57799044 31.23795324 0.042460502 0.054864335 2.20E-07 6.657128461 -0.094535302 GLTPS(ph)QIGVILR ddPTM_K562_Paclitaxel_30min_R1 1 GLTPSQIGVILR 12 0 P62277;J3KMX5 P62277 RPS13 40S ribosomal protein S13 1 GLT(0.264)PS(0.736)QIGVILR 128.96 0.001018 3770800 946.43 766.6 1219.4 1300 916.16 928.94 731.4 929.1 789.5 1019 TRUE FALSE 959.68294 850.2999805 911.5473887 1216.623819 1040.956503 1093.674466 870.1793318 850.1671557 865.3350026 811.3272407 1.182855563 1.048035784 1.123526172 1.499547603 1.283029153 1.348006589 1.072538044 1.047872071 1.066567174 1 9.664140118 -7.871136688 6.968286971 1.046800545 1.245471911 0.415035652 0.117045873 0.261510428 15.11357653 0.055200281 0.037127325 1.35E-08 7.871136688 0.198671366 GLVAAYSGDS(ph)DNEEELVER ddPTM_K562_Paclitaxel_30min_R1 3 GLVAAYSGDSDNEEELVER 19 0 P52756 P52756 RBM5 RNA-binding protein 5 1 GLVAAYSGDS(1)DNEEELVER;GLVAAYSGDS(1)DNEEELVER;GLVAAYS(0.006)GDS(0.994)DNEEELVER 211.26 5.41E-24 214486000 10047.7 10583.4 10582.5 11025.9 10221.1 9164.6 9991.1 12327.2 7683.1 12561.8 TRUE FALSE 10188.3988 11738.9314 7910.816992 10318.74812 11613.38686 10789.81313 11886.85907 11279.92742 8421.096084 10001.69826 1.018666883 1.173693816 0.790947375 1.031699603 1.161141494 1.078798105 1.188484071 1.127801211 0.84196662 1 13.28795737 -6.528286272 24.89023008 1.081022688 0.995522088 0.054784401 0.125699757 358.8522741 1651743.702 0.037293689 0.048303231 2.96E-07 6.528286272 -0.0855006 GLVAAYSGES(ph)DS(ph)EEEQER ddPTM_K562_Paclitaxel_30min_R1 2 GLVAAYSGESDSEEEQER 18 0 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 2 GLVAAYS(0.048)GES(0.952)DS(1)EEEQER;GLVAAY(0.114)S(0.058)GES(0.874)DS(0.954)EEEQER 124.2 3.55E-05 6976300 2425.74 2926.5 2808 3238.4 3311.3 2635.6 2515.6 3457.1 2034.57 3504 TRUE FALSE 2459.707844 3246.025167 2099.085671 3030.703519 3762.355121 3102.986654 2992.921968 3163.397776 2229.999539 2789.882877 0.881652726 1.163498724 0.752392041 1.086319266 1.348570993 1.112228288 1.072776923 1.133881929 0.799316544 1 11.44598884 -2.051030694 19.17591334 1.047821679 0.005199573 0 0.172169464 0 0 0.039612372 0 0.008891383 2.051030694 -1.042622106 GLVAAYSGES(ph)DS(ph)EEEQERGGPER ddPTM_K562_Paclitaxel_30min_R1 1 GLVAAYSGESDSEEEQERGGPER 23 1 P98175-5;P98175-2;P98175;P98175-4;P98175-3 P98175-5 RBM10 RNA-binding protein 10 2 GLVAAY(0.001)S(0.006)GES(0.993)DS(1)EEEQERGGPER 86.8 0.00044743 15038000 2302 2348.4 2993.7 2651.7 2082.5 2731 2940.1 3104 1995.3 3529.3 TRUE FALSE 2334.235102 2604.806254 2237.903409 2481.631831 2366.171757 3215.304505 3497.968627 2840.295825 2186.95748 2810.026723 0.830680749 0.926968499 0.796399334 0.883134602 0.842045998 1.144225597 1.244816855 1.01077182 0.778269282 1 11.45636813 -7.245668755 24.14423249 1.049364958 0.858010534 0.371923176 0.116104839 585.7558816 896770.448 0.040922924 0.040774757 5.68E-08 7.245668755 -0.191354424 GLVLDHGAR ddPTM_K562_Paclitaxel_30min_R1 1 GLVLDHGAR 9 0 P40227;P40227-2 P40227 CCT6A T-complex protein 1 subunit zeta 0 136.27 4.93E-11 0 5229.2 5548.5 5343.9 6423.9 5468.8 5046.1 6922.8 7081.3 5116 7720.9 FALSE TRUE 5302.424933 6154.303994 3994.766352 6011.899806 6213.743148 5940.954984 8236.365161 6479.699365 5607.414659 6147.376342 0.86255089 1.001126928 0.64983273 0.977961893 1.010795956 0.966421227 1.339817949 1.054059326 0.91216388 1 12.58575509 GLVYETSVLDPDEGIRFR ddPTM_K562_Paclitaxel_30min_R1 1 GLVYETSVLDPDEGIRFR 18 1 F8W642;F8VZK9;F8VX07;F8VRP1;F8VX68;F8VPF9;F8VPA1;F8VTT8;F8W1S4;F8W4S1;H0YH82;A0A0C4DGI3;B4DJV2;O75390 F8W642 CS "Citrate synthase;Citrate synthase, mitochondrial" 0 149.59 8.32E-09 13120000 989.7 784.63 727.08 897.1 565.33 853.27 976.21 1186.4 888.49 1085.2 FALSE TRUE 1003.558853 870.2985568 543.5196616 839.5640213 642.3375171 1004.585454 1161.440751 1085.607915 973.8334344 864.0356443 1.161478534 1.007248442 0.629047731 0.971677531 0.743415531 1.16266668 1.344204674 1.256438808 1.127075533 1 9.754947019 -7.385960478 6.305069058 1.209593408 0.897931382 0.422784849 0.159538901 0.221485567 10.47773419 0.057508274 0.0505074 4.11E-08 7.385960478 -0.311662026 GMGPGT(ph)PAGYGR ddPTM_K562_Paclitaxel_30min_R1 2 GMGPGTPAGYGR 12 0 P23246 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 1 GMGPGT(1)PAGYGR;GMGPGT(1)PAGYGR 120.03 0.0065815 271424000 1536.12 1298.43 1495.58 1634.99 1370.25 1381.49 1429.1 1596.89 1509.38 1538.2 TRUE FALSE 1557.630419 1440.196978 1118.002332 1530.129059 1556.901249 1626.477854 1700.264265 1461.224227 1654.362693 1224.713996 1.271831975 1.175945554 0.912868095 1.249376642 1.271236594 1.328047087 1.388294958 1.193114664 1.350815536 1 10.25822916 -6.493341662 24.67245048 1.273845335 1.118343908 0.171660906 0.131367164 873.1667803 729359.4087 0.035955766 0.053230485 3.21E-07 6.493341662 -0.155501427 GMSIYPGYMS(ph)PHAGYPAGGLLR ddPTM_K562_Paclitaxel_30min_R1 1 GMSIYPGYMSPHAGYPAGGLLR 22 0 H0Y760;Q9Y4B4 H0Y760 RAD54L2 Helicase ARIP4 1 GMS(0.003)IY(0.003)PGY(0.415)MS(0.578)PHAGY(0.002)PAGGLLR 57.145 0.018572 18562000 1673.4 1927.7 2161.1 2035.8 2237.5 2011.8 1921.9 2154.9 1797.1 2229.5 TRUE FALSE 1696.832763 2138.172805 1615.503577 1905.2329 2542.285381 2368.564483 2286.570492 1971.827795 1969.719485 1775.126676 0.955893901 1.204518435 0.910077911 1.07329405 1.432171245 1.3343073 1.288116799 1.110809623 1.109621928 1 10.79370627 -5.256080835 23.65746955 1.173047778 0.955893699 0.143035245 0.149775435 577.6260773 2549986.954 0.040525216 0.331397648 5.55E-06 5.256080835 -0.217154079 GNAS(ph)PGAATHDSLSDYGPQDSRPTPMR ddPTM_K562_Paclitaxel_30min_R1 1 GNASPGAATHDSLSDYGPQDSRPTPMR 27 1 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 GNAS(0.803)PGAAT(0.19)HDS(0.005)LS(0.001)DY(0.001)GPQDSRPTPMR 47.241 0.01936 54746000 699.68 812.58 1024.4 830.22 795.47 825.57 524.61 792 765.28 820.07 TRUE FALSE 709.4776787 901.3002324 765.7775504 776.9734051 903.8264814 971.9732479 624.1520089 724.7146565 838.7885634 652.9392839 1.086590585 1.380373726 1.172815864 1.189962718 1.384242768 1.488611992 0.955911253 1.109926565 1.284634857 1 9.350805033 -9.109142926 0.574786548 1.008829643 1.261490229 0.167134921 0.152177554 1.853459205 1.412511914 0.173923205 0.074262326 7.78E-10 9.109142926 0.252660586 GNASPGAAT(ph)HDSLSDYGPQDSRPTPMR ddPTM_K562_Paclitaxel_30min_R1 1 GNASPGAATHDSLSDYGPQDSRPTPMR 27 1 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 GNAS(0.276)PGAAT(0.684)HDS(0.019)LS(0.005)DY(0.016)GPQDSRPTPMR 73.459 0.0010757 51752000 360.44 379.71 522.73 431.54 447.41 319.79 533.24 418.81 262.34 433.73 TRUE FALSE 365.4872721 421.1680219 390.7603465 403.8629559 508.3548167 376.5002664 634.4195063 383.2294764 287.5389292 345.3355879 1.058353917 1.219590557 1.131538017 1.169479689 1.472060322 1.090244619 1.837110129 1.109730621 0.832636251 1 8.431855206 -8.522918066 24.97523846 0.934606362 1.284460192 0.307727014 0.220215237 1.793878662 1134373.88 0.144536772 0.055849681 3.00E-09 8.522918066 0.349853829 GNDPLTSS(ph)PGR ddPTM_K562_Paclitaxel_30min_R1 5 GNDPLTSSPGR 11 0 P49736;F8WDM3;C9JZ21;C9J013 P49736 MCM2 DNA replication licensing factor MCM2 1 GNDPLT(0.003)S(0.017)S(0.98)PGR;GNDPLT(0.003)S(0.011)S(0.986)PGR;GNDPLTS(0.003)S(0.997)PGR;GNDPLT(0.006)S(0.129)S(0.865)PGR;GNDPLTS(0.034)S(0.966)PGR 126.34 0.0016302 1490292000 17625 17256.6 21281.9 20054.8 18382.2 18633.6 17825.2 20073.6 17248 20123.5 TRUE FALSE 17871.80438 19140.73395 15909.02113 18768.57489 20886.16685 21938.00733 21207.43865 18368.22238 18904.74747 16022.31965 1.11543177 1.194629389 0.992928707 1.17140185 1.303566981 1.369215432 1.323618496 1.146414675 1.179900781 1 13.96779541 -6.523647732 24.87779735 1.240107584 1.105660797 0.181321293 0.108832111 36.08354558 1167313.67 0.032434167 0.042245806 2.99E-07 6.523647732 -0.134446787 GNDPLTSS(ph)PGRSS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 GNDPLTSSPGRSSR 14 1 P49736;F8WDM3;C9JZ21;C9J013 P49736 MCM2 DNA replication licensing factor MCM2 2 GNDPLT(0.062)S(0.084)S(0.854)PGRS(0.26)S(0.74)R;GNDPLT(0.093)S(0.145)S(0.762)PGRS(0.001)S(0.999)R 169.15 0.00038476 28499000 5133.3 4748.2 6841.7 5176.2 5167.2 5137.8 4997.5 5087.8 5061.3 5630.5 TRUE FALSE 5205.182038 5266.624533 5114.428218 4844.2217 5871.060121 6048.916692 5945.749536 4655.559633 5547.460479 4483.001009 1.161093211 1.174798873 1.140849223 1.080575643 1.309627214 1.349300765 1.326287798 1.038491766 1.237443504 1 12.13024911 -9.667249897 1.046142662 1.00005633 1.20704948 0.267758776 0.099188238 4.741765624 6.171544546 0.108805971 0.032609858 2.15E-10 9.667249897 0.20699315 GNHVIRDEEVS(ph)SADISSSSEVISQHLVSYR ddPTM_K562_Paclitaxel_30min_R1 1 GNHVIRDEEVSSADISSSSEVISQHLVSYR 30 1 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 1 GNHVIRDEEVS(0.498)S(0.498)ADIS(0.004)SSSEVISQHLVSYR 103.85 3.30E-09 20344000 463.59 426.25 481.44 413.82 480.39 488.11 428.28 518.02 390.87 566.55 TRUE FALSE 470.0816903 472.7894165 359.8945176 387.2794374 545.8272511 574.6694551 509.5438942 474.0109676 428.41481 451.086799 1.042109171 1.048111843 0.797838727 0.858547486 1.2100271 1.273966466 1.129591678 1.050819861 0.949739187 1 8.817261256 -6.75775422 24.99998741 1.114840545 0.934698015 0.336485826 0.113169731 115.7234596 785058.1591 0.037389396 0.046397814 1.75E-07 6.75775422 -0.18014253 GNHVIRDEEVSS(ph)ADISSSSEVISQHLVSYR ddPTM_K562_Paclitaxel_30min_R1 2 GNHVIRDEEVSSADISSSSEVISQHLVSYR 30 1 P12270;P12270-2 P12270 TPR Nucleoprotein TPR 1 GNHVIRDEEVS(0.398)S(0.602)ADISSSSEVISQHLVSYR;GNHVIRDEEVS(0.463)S(0.53)ADIS(0.006)SSSEVISQHLVSYR 109.08 2.87E-10 41620000 922.74 1120.02 1008.54 1062.04 1159.76 1145.5 1021.67 1287.52 1421.33 1318.32 TRUE FALSE 935.6612069 1242.307571 753.9216035 993.9255079 1317.738947 1348.638341 1215.526549 1178.13714 1557.855097 1049.64566 0.891406731 1.183549476 0.718262964 0.946915274 1.255413133 1.284851062 1.15803513 1.122414148 1.484172379 1 10.03568667 -6.756234984 24.04887272 1.223997915 0.937301012 0.43528132 0.15749314 75.04996872 346792.48 0.045709699 0.05717343 1.75E-07 6.756234984 -0.286696903 GNIETTS(ph)EDGQVFSPK ddPTM_K562_Paclitaxel_30min_R1 2 GNIETTSEDGQVFSPK 16 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 GNIET(0.032)T(0.157)S(0.789)EDGQVFS(0.022)PK;GNIET(0.195)T(0.31)S(0.495)EDGQVFSPK 113.14 0.00088173 34693000 4093.9 3889.6 6294.1 5003.4 4015.7 3893.9 3375.2 4564.2 4160 5161.1 TRUE FALSE 4151.227231 4314.279682 4705.076611 4682.504318 4562.706326 4584.428492 4015.62658 4176.442721 4559.586587 4109.264987 1.010211618 1.049890843 1.144992261 1.139499237 1.110346094 1.115632237 0.977212858 1.016347871 1.109586897 1 12.00466465 -7.744332386 24.99964768 1.027149217 1.09802025 0.318353942 0.04955719 309.9408885 452938.4992 0.020237887 0.015637759 1.80E-08 7.744332386 0.070871032 GNIETTSEDGQVFS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 3 GNIETTSEDGQVFSPK 16 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 GNIETTSEDGQVFS(1)PK;GNIETT(0.001)S(0.023)EDGQVFS(0.977)PK;GNIETTSEDGQVFS(1)PK 167.95 8.18E-08 193443100 4719.64 4376.4 7030.4 4744.51 4038.39 3960.65 3713.91 5204.6 3986.35 6438.12 TRUE FALSE 4785.729521 4854.230152 5255.488569 4440.218364 4588.487089 4663.015667 4418.605035 4762.436744 4369.256729 5126.02761 0.933613684 0.946976981 1.025255611 0.866210388 0.895135071 0.909674317 0.861993998 0.929069663 0.852366991 1 12.32362553 -6.276184959 24.90730051 0.897467681 0.966451587 0.304736023 0.045662877 818.761952 1382998.636 0.012050046 0.017955345 5.29E-07 6.276184959 0.068983906 GNKHDDGTQS(ph)DSENAGAHR ddPTM_K562_Paclitaxel_30min_R1 1 GNKHDDGTQSDSENAGAHR 19 1 H0Y2V6;Q5SW79-2;Q5SW79-3;Q5SW79 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 GNKHDDGT(0.001)QS(0.781)DS(0.218)ENAGAHR 64.522 0.01693 424130 232.4 128.57 216.35 0 182.45 135.49 0 91.139 0 227.09 TRUE FALSE 235.654317 142.6077074 161.7297667 0 207.3027789 159.5172491 0 83.39617308 0 180.8089333 1.303333373 0.788720473 0.89447885 0 1.146529516 0.882242078 0 0.461239229 0 1 7.498322149 -7.741913034 24.99763021 0.320413023 0.812529272 0.233038102 0.413737954 341.7635339 437525.7674 0.155027272 0.119906265 1.81E-08 7.741913034 0.492116249 GNLELRPGGAHPGT(ph)CSPSRPGS ddPTM_K562_Paclitaxel_30min_R1 1 GNLELRPGGAHPGTCSPSRPGS 22 2 Q5JTU8;B1AMJ5;A0A0A0MRG9;Q96SN8-4;Q96SN8-3;Q96SN8-2;Q96SN8 Q5JTU8 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 GNLELRPGGAHPGT(0.614)CS(0.318)PS(0.039)RPGS(0.029) 79.845 0.014705 277070000 4247.3 4763.8 5140.6 5102.3 4712.9 4800.2 4713.2 5244.7 4400.8 5200.9 TRUE FALSE 4306.775304 5283.927794 3842.791952 4775.061315 5354.87677 5651.448072 5607.505095 4799.129999 4823.516503 4140.953725 1.040044297 1.276017107 0.927996835 1.153130808 1.293150594 1.364769676 1.354157875 1.158943161 1.164832264 1 12.01574737 -5.239984105 21.98638988 1.197848236 1.040043451 0.093025597 0.135667022 2412.795671 2472317.836 0.035634927 1.250729853 5.75E-06 5.239984105 -0.157804786 GNLELRPGGAHPGTCS(ph)PSRPGS ddPTM_K562_Paclitaxel_30min_R1 1 GNLELRPGGAHPGTCSPSRPGS 22 2 Q5JTU8;B1AMJ5;A0A0A0MRG9;Q96SN8-4;Q96SN8-3;Q96SN8-2;Q96SN8 Q5JTU8 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 GNLELRPGGAHPGT(0.041)CS(0.474)PS(0.474)RPGS(0.011) 96.234 0.0025359 112130000 1700.6 1864.6 1954.5 2054.8 1833.2 1923.8 1833 2405.1 1952.2 2158.4 TRUE FALSE 1724.413647 2068.183334 1461.062302 1923.014325 2082.912876 2264.958919 2180.802181 2200.771743 2139.717533 1718.516895 1.003431303 1.203469887 0.850187918 1.118996462 1.212040965 1.317973029 1.269002468 1.280622698 1.24509543 1 10.74694832 -6.658392523 3.517223322 1.243243108 1.031116757 0.371612374 0.114880166 0.22523469 5.411750638 0.033745297 0.044228456 2.20E-07 6.658392523 -0.212126351 GNLTFTAQYLS(ph)HY(ph)WT(ph)PWNAS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 GNLTFTAQYLSHYWTPWNASR 21 0 F8WDX2 F8WDX2 IL10RB 4 GNLT(0.331)FT(0.365)AQY(0.196)LS(0.503)HY(0.607)WT(0.999)PWNAS(0.999)R 41.51 0.02747 10220000 831.71 734.65 1024.2 1088.5 859.77 830.6 752.24 947.94 846.63 950.86 TRUE FALSE 843.356506 814.8615714 765.6280429 1018.688482 976.88523 977.8952478 894.973613 867.4065801 927.9525943 757.0742101 1.113968082 1.076329851 1.011298539 1.345559614 1.290342766 1.291676872 1.182147802 1.145735211 1.225708896 1 9.564290913 -6.245716038 24.99562078 1.22305901 1.068111923 0.329927114 0.093303297 901.8607361 1433699.405 0.025278428 0.043605211 5.68E-07 6.245716038 -0.154947087 GNQSGRS(ph)PNNPFSR ddPTM_K562_Paclitaxel_30min_R1 1 GNQSGRSPNNPFSR 14 1 Q9UNY4 Q9UNY4 TTF2 Transcription termination factor 2 1 GNQS(0.014)GRS(0.986)PNNPFSR 75.911 0.027988 36499000 917.89 877.35 1088.4 1121.7 1266.2 1107.6 1072.1 1097.9 1116.8 1162.9 TRUE FALSE 930.7432919 973.14204 813.6199588 1049.759183 1438.677877 1304.017309 1275.525378 1004.626542 1224.07363 925.9003417 1.005230531 1.051022444 0.878733836 1.133771244 1.553815041 1.408377608 1.377605473 1.085026646 1.32203605 1 9.854713109 -6.526211575 24.95551911 1.309053592 0.989040637 0.453026794 0.153822942 84.19671628 630441.241 0.045755751 0.059375829 2.98E-07 6.526211575 -0.320012955 GNRGS(ph)GGGGGGGGQGSTNYGK ddPTM_K562_Paclitaxel_30min_R1 2 GNRGSGGGGGGGGQGSTNYGK 21 1 Q99729-3;Q99729-4 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 1 GNRGS(1)GGGGGGGGQGSTNYGK;GNRGS(1)GGGGGGGGQGSTNYGK 152.52 7.33E-18 31275600 4090.52 3383.9 5791.97 4003.33 3215.58 2628.1 3217.28 4083.23 2648.6 3854.12 TRUE FALSE 4147.7999 3753.365646 4329.715539 3746.574332 3653.596436 3094.156635 3827.742085 3736.334125 2903.009864 3068.648228 1.351670049 1.223133239 1.41095206 1.22092011 1.190620809 1.008312587 1.247370764 1.217583068 0.946022368 1 11.58338756 -6.804598053 0.260978567 0.9767433 1.459956327 0.548262519 0.09716714 3.501412431 0.407121655 0.164627932 0.544017976 1.57E-07 6.804598053 0.483213027 GNS(ph)PPSSGEACREEK ddPTM_K562_Paclitaxel_30min_R1 1 GNSPPSSGEACREEK 15 1 P41227;P41227-2 P41227 NAA10 N-alpha-acetyltransferase 10 1 GNS(0.745)PPS(0.241)S(0.014)GEACREEK 102.72 0.011928 14161000 3069 2760 4737.6 3583.4 2674.3 2660 1898.4 3044.1 2833.2 4001.4 TRUE FALSE 3111.975469 3061.346134 3541.534286 3353.576763 3038.584936 3131.713652 2258.61149 2785.484704 3105.341519 3185.912484 0.976792515 0.960900888 1.111623218 1.052626769 0.953756562 0.982987972 0.708937079 0.874313001 0.974710239 1 11.63749092 -7.546156319 24.9994976 0.874294172 1.011449811 0.31131224 0.084878381 260.0063983 279237.3977 0.033012726 0.025572802 2.84E-08 7.546156319 0.137155639 GNS(ph)RPGTPS(ph)AEGGSTSSTLR ddPTM_K562_Paclitaxel_30min_R1 1 GNSRPGTPSAEGGSTSSTLR 20 1 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 2 GNS(0.999)RPGT(0.144)PS(0.465)AEGGS(0.292)T(0.072)S(0.018)S(0.008)T(0.002)LR 139.43 2.15E-12 33922000 2408.8 2299.1 3115.9 2645.9 2530.9 2610.8 2011.1 2552.5 1670.8 2613 TRUE FALSE 2442.530632 2550.123513 2329.252508 2476.203817 2875.651428 3073.788723 2392.695726 2335.649193 1831.287805 2080.469166 1.174028759 1.22574444 1.119580404 1.190214139 1.382212953 1.477449785 1.150075072 1.122655039 0.880228285 1 11.02269319 -8.450043628 2.316477213 0.9461817 1.254421058 0.559129716 0.107288071 0.25556454 2.546360301 0.092792851 0.032857798 3.55E-09 8.450043628 0.308239358 GNSPPS(ph)SGEACREEK ddPTM_K562_Paclitaxel_30min_R1 1 GNSPPSSGEACREEK 15 1 P41227;P41227-2 P41227 NAA10 N-alpha-acetyltransferase 10 1 GNS(0.151)PPS(0.687)S(0.161)GEACREEK 85.909 0.0129 36339000 3068.8 2967.9 5635.9 3671.1 3201.9 2654.2 2651.7 3584.1 3059.5 3823.9 TRUE FALSE 3111.772668 3291.945359 4213.047341 3435.652077 3638.052989 3124.885103 3154.846232 3279.608334 3353.378645 3044.587081 1.022067225 1.081245263 1.383782835 1.128445988 1.194924925 1.026374027 1.036214813 1.077193145 1.101423134 1 11.57203086 -7.261720517 24.99932652 1.052313955 1.16804849 0.275874447 0.091856867 36.78048358 3270543.564 0.032714936 0.030670417 5.47E-08 7.261720517 0.115734535 GNSRPGT(ph)PSAEGGSTSSTLR ddPTM_K562_Paclitaxel_30min_R1 2 GNSRPGTPSAEGGSTSSTLR 20 1 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 1 GNSRPGT(0.999)PS(0.001)AEGGSTSSTLR;GNS(0.003)RPGT(0.962)PS(0.029)AEGGS(0.002)TS(0.001)S(0.001)T(0.001)LR 91.503 0.0054749 258639000 2597.59 2405.37 2927.9 3045.5 2707.11 2238.63 2510.95 2631.21 2291.4 2576.52 TRUE FALSE 2633.964274 2667.996431 2188.715433 2850.175261 3075.864214 2635.619599 2987.389654 2407.672287 2511.499208 2051.42381 1.283968852 1.300558382 1.066925041 1.389364425 1.499380186 1.284775767 1.456251819 1.173659132 1.224271258 1 11.00240986 -9.058924343 1.381375966 1.00522663 1.318801384 0.398762634 0.117176731 0.533209332 2.251756759 0.116627818 0.035044756 8.73E-10 9.058924343 0.313574754 GNVVPS(ph)PLPTR ddPTM_K562_Paclitaxel_30min_R1 2 GNVVPSPLPTR 11 0 H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9;Q9Y2V2 H3BTK3 CARHSP1 Calcium-regulated heat stable protein 1 1 GNVVPS(1)PLPTR;GNVVPS(0.587)PLPT(0.413)R 85.271 0.026303 116293000 4386 3841.2 4512.9 4514.8 4131.6 3681.6 3666.2 4868.8 2777.7 5123.4 TRUE FALSE 4447.417532 4260.595206 3373.56258 4225.240935 4694.393869 4334.480068 4361.842311 4455.16505 3044.510496 4079.248268 1.090254194 1.04445597 0.827005948 1.035789111 1.150798765 1.062568342 1.06927601 1.092153445 0.746341065 1 11.9940876 -8.744198048 24.99964412 0.873170426 1.043559995 0.332975037 0.098077925 248.8276773 360799.0928 0.068292312 0.025676524 1.80E-09 8.744198048 0.170389569 GNVVPS(ph)PLPTRR ddPTM_K562_Paclitaxel_30min_R1 1 GNVVPSPLPTRR 12 1 H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9;Q9Y2V2 H3BTK3 CARHSP1 Calcium-regulated heat stable protein 1 1 GNVVPS(0.984)PLPT(0.016)RR 81.632 0.017814 17298000 1455.3 1432.2 1559.4 1633 1423.5 1482.2 1621.8 1477.4 1142.2 1816.6 TRUE FALSE 1475.67869 1588.572439 1165.710184 1528.266689 1617.4048 1745.047359 1929.528084 1351.885648 1251.913413 1446.375923 1.020259441 1.098312281 0.805952426 1.056617899 1.118246491 1.20649641 1.334043282 0.934671013 0.86555189 1 10.49822685 -5.017892728 15.48149104 1.053949631 1.00247212 0.000666694 0.148985401 7225702.044 293053713.5 0.040072008 4799172.537 9.60E-06 5.017892728 -0.05147751 GPAADPS(ph)SPGTSGVGPAAGAGDSR ddPTM_K562_Paclitaxel_30min_R1 2 GPAADPSSPGTSGVGPAAGAGDSR 24 0 A0A0U1RRM4 A0A0U1RRM4 1 GPAADPS(0.625)S(0.375)PGTSGVGPAAGAGDSR;GPAADPS(0.5)S(0.5)PGTSGVGPAAGAGDSR 268.49 1.95E-120 140193000 4509 5127.5 5086.5 5260.3 5261.2 4362.5 4231.3 5301.5 3778.3 5336.2 TRUE FALSE 4572.139911 5687.33779 3802.350166 4922.927902 5977.864513 5136.128122 5034.167086 4851.104484 4141.222597 4248.679511 1.076131984 1.338613039 0.894948691 1.158695988 1.406993514 1.208876337 1.184878048 1.141791107 0.974708162 1 12.05279881 -8.679425928 3.831532545 0.984791853 1.184048225 0.253881752 0.130677715 0.318964412 8.600060947 0.108789373 0.034646971 2.09E-09 8.679425928 0.199256371 GPAADPSS(ph)PGTSGVGPAAGAGDSR ddPTM_K562_Paclitaxel_30min_R1 2 GPAADPSSPGTSGVGPAAGAGDSR 24 0 A0A0U1RRM4 A0A0U1RRM4 1 GPAADPS(0.181)S(0.816)PGT(0.001)S(0.002)GVGPAAGAGDSR;GPAADPS(0.275)S(0.68)PGT(0.035)S(0.011)GVGPAAGAGDSR 166.59 7.35E-26 140595000 5140.1 4653.8 5159.9 5599.6 5182.5 4449.2 4265.5 5586.9 4203.3 5436.2 TRUE FALSE 5212.077259 5161.917622 3857.219428 5240.466719 5888.44424 5238.20315 5074.856358 5112.257973 4607.045746 4328.299456 1.204185919 1.192597156 0.891162792 1.210744952 1.360452136 1.210221983 1.172482729 1.181123909 1.064400879 1 12.0795846 -8.906361717 3.119685904 1.00110988 1.177326843 0.231627862 0.109004902 0.369906836 7.126250189 0.112281051 0.030192664 1.24E-09 8.906361717 0.176216963 GPAGDATVAS(ph)EKESVM ddPTM_K562_Paclitaxel_30min_R1 1 GPAGDATVASEKESVM 16 1 M0QXM4;Q15758-3;Q15758-2;Q15758 M0QXM4 SLC1A5 Amino acid transporter;Neutral amino acid transporter B(0) 1 GPAGDAT(0.002)VAS(0.99)EKES(0.008)VM 94.45 0.020665 17064000 1304.8 1367.9 1893.2 1381 1331.5 1202.1 1466.6 1696.6 1072.7 1849.5 TRUE FALSE 1323.071226 1517.251948 1415.238245 1292.428841 1512.872842 1415.275557 1744.879694 1552.46324 1175.737628 1472.570885 0.898477105 1.030342216 0.961066296 0.877668338 1.027368433 0.961091633 1.18492068 1.054253657 0.798425149 1 10.52412137 -6.814174232 24.99993293 1.013922314 0.94957556 0.082858601 0.097421161 258.6048154 122594.5921 0.030974098 0.035121356 1.53E-07 6.814174232 -0.064346754 GPALTPIRDEEWGGHS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 GPALTPIRDEEWGGHSPR 18 1 S4R3V8;Q86X29-6;Q86X29-5;Q86X29-2;Q86X29-3;Q86X29-4;Q86X29 S4R3V8 LSR Lipolysis-stimulated lipoprotein receptor 1 GPALTPIRDEEWGGHS(1)PR;GPALTPIRDEEWGGHS(1)PR;GPALTPIRDEEWGGHS(1)PR 112.14 0.00033276 1347520000 5145.1 6020.9 5746.3 6202.6 5768.3 5371.3 5901.4 6223 4123.45 6106.9 TRUE FALSE 5217.147274 6678.282223 4295.575496 5804.792998 6554.040118 6323.824638 7021.159843 5694.317307 4519.525797 4862.310428 1.072977004 1.373479197 0.883443285 1.193834307 1.347927125 1.300580194 1.443996624 1.171113484 0.929501698 1 12.24742629 -8.669430529 4.983798603 0.966581258 1.233493552 0.317399882 0.153235614 0.246735516 9.906155583 0.117445844 0.040706939 2.14E-09 8.669430529 0.266912294 GPAPAGS(ph)PSQHQFHPGR ddPTM_K562_Paclitaxel_30min_R1 1 GPAPAGSPSQHQFHPGR 17 0 A0A0X1KG68;Q5XG87 A0A0X1KG68 PAPD7 Non-canonical poly(A) RNA polymerase PAPD7 1 GPAPAGS(0.981)PS(0.019)QHQFHPGR 102.24 0.0013893 4264700 938.32 940.41 1118.4 1269.8 1218.5 993.68 717.32 1115.7 1097 1211.8 TRUE FALSE 951.459375 1043.087144 836.0460878 1188.360711 1384.480329 1169.895196 853.4277253 1020.914321 1202.371752 964.8344948 0.986137395 1.081104738 0.866517618 1.231673119 1.434940746 1.212534587 0.884532767 1.058123778 1.246194822 1 9.914137677 -6.271584322 24.94647507 1.158088805 0.988238395 0.21936982 0.150349987 1150.956738 2830207.539 0.046377026 0.069675237 5.35E-07 6.271584322 -0.16985041 GPASQFYITPSTSLS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 GPASQFYITPSTSLSPR 17 0 H0YIQ2;P49750-3;P49750-1;P49750 H0YIQ2 YLPM1 YLP motif-containing protein 1 1 GPASQFYITPSTS(0.002)LS(0.998)PR;GPASQFYITPSTS(0.006)LS(0.994)PR 182.09 2.24E-10 200116000 3902.1 4132.2 4814 4610.1 4196.6 4435.8 4174.6 4779.5 4511.2 4817.1 TRUE FALSE 3956.741439 4583.36757 3598.646161 4314.42882 4768.247969 5222.426848 4966.708557 4373.451642 4944.520917 3835.372376 1.031644662 1.195025442 0.938278167 1.124904806 1.243229471 1.361647928 1.294974274 1.140293879 1.289189271 1 11.90515094 -6.637406394 4.229103659 1.238942341 1.063898542 0.308615609 0.110480219 0.245063311 7.818560626 0.032426199 0.042408328 2.30E-07 6.637406394 -0.175043799 GPASSHRES(ph)PRGSGGAEAALEEAAR ddPTM_K562_Paclitaxel_30min_R1 1 GPASSHRESPRGSGGAEAALEEAAR 25 2 C9JAV3;A4D2B0 C9JAV3 MBLAC1 Metallo-beta-lactamase domain-containing protein 1 1 GPAS(0.066)S(0.066)HRES(0.865)PRGS(0.003)GGAEAALEEAAR 45.205 0.025727 30635000 369.57 296.82 353.26 347.08 496.74 391.28 361.6 444.55 421.99 412.91 TRUE FALSE 374.7451202 329.2278114 264.0751439 324.8198423 564.4043979 460.6680142 430.2117123 406.7827027 462.524025 328.7587153 1.139878892 1.00142687 0.803249105 0.988018955 1.716773949 1.401234378 1.308594091 1.237329031 1.406879889 1 8.36088533 -6.619564944 13.33266841 1.35792138 0.968880845 0.482427342 0.183266843 0.522348888 69.02160101 0.053790056 0.069441721 2.40E-07 6.619564944 -0.389040536 GPASTPT(ph)YSPAPTQPAPR ddPTM_K562_Paclitaxel_30min_R1 1 GPASTPTYSPAPTQPAPR 18 0 Q6P1N0;Q6P1N0-2;K7EJY5 Q6P1N0 CC2D1A Coiled-coil and C2 domain-containing protein 1A 1 GPAS(0.001)T(0.193)PT(0.403)YS(0.403)PAPTQPAPR 186.96 3.62E-12 16133000 2005.8 2285.5 2079.3 2175.7 2356.1 2033 1646.6 2116.6 1779.5 2169.1 TRUE FALSE 2033.887388 2535.038619 1554.354999 2036.16034 2677.040709 2393.524005 1959.033754 1936.781619 1950.428926 1727.036229 1.177674998 1.467854916 0.900012966 1.178991098 1.55007791 1.385914183 1.134332749 1.12144817 1.129350324 1 10.75408263 -7.914584753 7.300373795 1.100673128 1.276016984 0.211078372 0.172015936 0.420415363 30.36698951 0.076909749 0.051687648 1.22E-08 7.914584753 0.175343856 GPASTPTYS(ph)PAPTQPAPR ddPTM_K562_Paclitaxel_30min_R1 1 GPASTPTYSPAPTQPAPR 18 0 Q6P1N0;Q6P1N0-2;K7EJY5 Q6P1N0 CC2D1A Coiled-coil and C2 domain-containing protein 1A 1 GPAS(0.101)T(0.101)PT(0.18)YS(0.617)PAPTQPAPR 287.03 1.51E-155 18169000 1648.4 1824.3 1826.8 1582.5 1476.1 1583.7 1645 1851.5 1210.4 1868.9 TRUE FALSE 1671.482686 2023.483243 1365.601746 1481.005533 1677.169811 1864.546959 1957.130163 1694.203518 1326.664328 1488.017154 1.123295307 1.359852094 0.917732529 0.995287943 1.127117255 1.253041306 1.315260484 1.138564508 0.891565211 1 10.53917544 -8.723919159 8.730419225 0.946048088 1.155577169 0.293009671 0.129224134 0.32209968 69.62287122 0.096128874 0.035426833 1.89E-09 8.723919159 0.209529081 GPDET(ph)LR ddPTM_K562_Paclitaxel_30min_R1 1 GPDETLR 7 0 E9PBS1;P22234;P22234-2;D6RF62 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 1 GPDET(1)LR 107.01 0.015321 55281000 4142.6 3679.7 5646.2 4166.7 3676.9 3372.6 3411.5 4622.9 3557.2 5449.6 TRUE FALSE 4200.609181 4081.46209 4220.746979 3899.466511 4177.75603 3970.683256 4058.814316 4230.15579 3898.884954 4338.968529 0.968112387 0.940652614 0.972753536 0.89870818 0.962845433 0.91512147 0.935432993 0.97492198 0.898574149 1 12.08313641 -11.33821581 5.00196623 1.00002877 0.941229542 0.291563595 0.027680299 8.26E-06 1.09E-06 0.024923557 0.006041893 4.59E-12 11.33821581 -0.058799228 GPDKLLPYPTLASPAS(ph)D ddPTM_K562_Paclitaxel_30min_R1 1 GPDKLLPYPTLASPASD 17 1 P0C1Z6-2;P0C1Z6 P0C1Z6-2 TFPT TCF3 fusion partner 1 GPDKLLPYPTLASPAS(1)D 121.03 0.00037496 10239000 1696.1 1290.7 2055.3 1464 1343.6 1416.5 1088.2 1527.3 2258.2 1666.8 TRUE FALSE 1719.850633 1431.622991 1536.414095 1370.105593 1526.621067 1667.696386 1294.680269 1397.546332 2475.1102 1327.105245 1.295941403 1.078756185 1.157718351 1.032401611 1.150339111 1.256642148 0.975567141 1.053078749 1.865044396 1 10.37406707 GPGAGSALDDGRRDPSSNDINGGMEPTPSTVSTPS(ph)PSADLLGLR ddPTM_K562_Paclitaxel_30min_R1 2 GPGAGSALDDGRRDPSSNDINGGMEPTPSTVSTPSPSADLLGLR 44 2 O95782-2;O95782 O95782-2 AP2A1 AP-2 complex subunit alpha-1 1 GPGAGSALDDGRRDPSSNDINGGMEPT(0.001)PS(0.005)T(0.003)VS(0.007)T(0.018)PS(0.833)PS(0.134)ADLLGLR;GPGAGSALDDGRRDPS(0.01)S(0.01)NDINGGMEPT(0.071)PS(0.062)T(0.055)VS(0.088)T(0.088)PS(0.527)PS(0.088)ADLLGLR 59.386 4.59E-06 291390000 1187.19 937.17 1214.84 1124.46 1260.96 1200.75 1071.85 1074.76 1095.38 1348.03 TRUE FALSE 1203.814323 1039.49339 908.138617 1052.342168 1432.7241 1413.686153 1275.227942 983.4524296 1200.596143 1073.300746 1.121600192 0.968501507 0.846117568 0.980472782 1.334876646 1.31713889 1.18813664 0.916287847 1.118601797 1 10.06783867 -4.899724485 19.09044292 1.078927444 4.62848516 0.007389473 0.156372702 3396.183506 657226.0953 0.042493568 8630.650682 1.26E-05 4.899724485 3.549557716 GPGAPAS(ph)PSASHPQGLDTTPKPH ddPTM_K562_Paclitaxel_30min_R1 2 GPGAPASPSASHPQGLDTTPKPH 23 1 E9PCM6;E7EQN5;P98171;P98171-2 E9PCM6 ARHGAP4 Rho GTPase-activating protein 4 1 GPGAPAS(0.841)PS(0.15)AS(0.009)HPQGLDTTPKPH;GPGAPAS(0.456)PS(0.456)AS(0.088)HPQGLDTTPKPH 112.74 8.29E-06 36629000 4561.9 4211.5 6779.5 5245 3937.4 3821.9 3620.1 5514.4 3767.4 5723.9 TRUE FALSE 4625.780675 4671.325812 5067.931377 4908.609176 4473.740541 4499.660303 4306.995077 5045.9173 4129.275603 4557.366038 1.015011881 1.025005622 1.112030795 1.077071522 0.981650476 0.98733792 0.945062354 1.107200356 0.90606626 1 12.15398453 -6.765959009 24.96350444 0.991077629 1.058885423 0.282032349 0.054073273 152.0071993 839589.7388 0.016273911 0.019089652 1.71E-07 6.765959009 0.067807793 GPGAPGLAHLQESQAGS(ph)DTDVEEGKAPQAVPLEK ddPTM_K562_Paclitaxel_30min_R1 1 GPGAPGLAHLQESQAGSDTDVEEGKAPQAVPLEK 34 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 GPGAPGLAHLQES(0.061)QAGS(0.851)DT(0.089)DVEEGKAPQAVPLEK 88.989 4.35E-09 64169000 2420.1 2211.5 5445.4 2918.3 1772.2 1867.4 1563.1 2901.7 1993.6 3749.8 TRUE FALSE 2453.988867 2452.959049 4070.641422 2731.1333 2013.603644 2198.55717 1859.690065 2655.182473 2185.094188 2985.588702 0.821944719 0.821599789 1.363430073 0.914772118 0.674441072 0.736389835 0.622888901 0.889332972 0.731880512 1 11.54379972 -6.540422768 11.69337067 0.763674502 1.010018789 0.261530937 0.172322976 0.720334918 474.6538151 0.051284334 0.066666455 2.88E-07 6.540422768 0.246344286 GPGEPDS(ph)PTPLHPPT(ph)PPILSTDR ddPTM_K562_Paclitaxel_30min_R1 1 GPGEPDSPTPLHPPTPPILSTDR 23 0 Q03164-2;Q03164;Q03164-3 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 2 GPGEPDS(0.741)PT(0.26)PLHPPT(0.968)PPILS(0.015)T(0.017)DR 84.878 0.00086918 40405000 1246.5 1479 1761.3 1620.9 1186.5 1467.6 1220.8 1565.8 1434.4 1746.9 TRUE FALSE 1263.954846 1640.482222 1316.638032 1516.942729 1348.121388 1727.858254 1452.440427 1432.775517 1572.180529 1390.880821 0.908744176 1.179455635 0.946621746 1.090634586 0.969257299 1.242276281 1.04425944 1.030120981 1.130348845 1 10.44178309 GPGEPDS(ph)PTPLHPPTPPILSTDR ddPTM_K562_Paclitaxel_30min_R1 1 GPGEPDSPTPLHPPTPPILSTDR 23 0 Q03164-2;Q03164;Q03164-3 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 GPGEPDS(0.909)PT(0.091)PLHPPTPPILSTDR 62.404 0.0079662 132400000 750.88 608.38 897.25 755.91 811.78 586.52 685 814.21 811.98 949.89 TRUE FALSE 761.3946367 674.8049858 670.7281405 707.4293159 922.3581795 690.5310869 814.9751741 745.0377784 889.974307 756.3018966 1.00673374 0.892242885 0.886852385 0.935379534 1.219563489 0.913036302 1.077579175 0.98510632 1.176744777 1 9.562818427 -6.562055074 24.99898677 1.056670767 0.922663138 0.341998036 0.089234826 169.8877796 108406.9652 0.024942607 0.03220081 2.74E-07 6.562055074 -0.134007628 GPGGS(ph)PGGLQK ddPTM_K562_Paclitaxel_30min_R1 4 GPGGSPGGLQK 11 0 Q96A00-2;Q96A00;K7EJB8;K7EMN0 Q96A00-2 PPP1R14A Protein phosphatase 1 regulatory subunit 14A 1 GPGGS(1)PGGLQK;GPGGS(1)PGGLQK;GPGGS(1)PGGLQK;GPGGS(1)PGGLQK 134.38 0.00081637 273998000 14858.8 13620.4 24936.3 16627.9 14100.3 13587.5 11870.2 17112.4 9040.4 19582.6 TRUE FALSE 15066.86904 15107.52133 18640.82266 15561.46092 16020.99958 15997.05235 14122.50848 15658.59481 9908.770814 15591.65537 0.966341847 0.968949157 1.195564051 0.998063422 1.027536794 1.026000894 0.905773515 1.004293286 0.635517562 1 13.92848649 -8.083832888 1.457781835 0.8479311 1.03545428 0.287867742 0.111994168 0.519387916 2.071888559 0.078938803 0.034913652 8.24E-09 8.083832888 0.18752318 GPGGS(ph)PGGLQKR ddPTM_K562_Paclitaxel_30min_R1 1 GPGGSPGGLQKR 12 1 Q96A00-2;Q96A00;K7EJB8;K7EMN0 Q96A00-2 PPP1R14A Protein phosphatase 1 regulatory subunit 14A 1 GPGGS(1)PGGLQKR 76.728 0.024249 14015000 3048 2773.6 4426 3252.9 2593.8 2179.3 2101.9 2769.6 2479.5 3454.5 TRUE FALSE 3090.681404 3076.431028 3308.60156 3044.273553 2947.119473 2565.768256 2500.724552 2534.305193 2717.667054 2750.471004 1.123691688 1.11851062 1.202921811 1.106818995 1.071496289 0.932846866 0.90919866 0.921407711 0.988073334 1 11.42546298 -7.051992939 2.365033752 0.942027594 1.142419618 0.857393116 0.036232559 0.103025112 1.144946314 0.013220835 0.013960096 8.87E-08 7.051992939 0.200392024 GPGGS(ph)QGSQGPSPQGAR ddPTM_K562_Paclitaxel_30min_R1 1 GPGGSQGSQGPSPQGAR 17 0 Q96MG7 Q96MG7 NDNL2 Melanoma-associated antigen G1 1 GPGGS(0.987)QGS(0.006)QGPS(0.006)PQGAR 95.554 0.0037721 721260 141.56 196.53 255.79 240.78 50.292 142.1 194.56 205.85 210.53 70.47 TRUE FALSE 143.5422767 217.98781 191.2126509 225.3374485 57.14262185 167.2994398 231.4767443 188.3617576 230.7523472 56.10817532 2.558313043 3.885134542 3.407928521 4.016125052 1.018436645 2.981730182 4.12554397 3.357117863 4.112633246 1 5.810139091 -11.25511226 5.113429839 0.999647566 3.270026645 0.365895427 0.897932446 0.003695655 0.00053836 0.890560251 0.215962854 5.56E-12 11.25511226 2.270379079 GPGGSQGSQGPS(ph)PQGAR ddPTM_K562_Paclitaxel_30min_R1 3 GPGGSQGSQGPSPQGAR 17 0 Q96MG7 Q96MG7 NDNL2 Melanoma-associated antigen G1 1 GPGGSQGSQGPS(1)PQGAR;GPGGSQGS(0.001)QGPS(0.999)PQGAR;GPGGSQGSQGPS(1)PQGAR 224.99 7.12E-31 15288100 2125.19 2067.25 2547.49 2216.4 2361.36 2296.42 2007.88 2442.99 1845.32 2574 TRUE FALSE 2154.949217 2292.959346 1904.344643 2074.250024 2683.01721 2703.657844 2388.864748 2235.442751 2022.571231 2049.417387 1.051493576 1.118834729 0.92921269 1.012116925 1.309160948 1.319232412 1.165631151 1.090769877 0.986900591 1 11.00099812 -5.257722724 21.44995142 1.113178188 1.051493424 0.010102193 0.125285692 314.8702109 1816561.306 0.034526982 0.240344872 5.52E-06 5.257722724 -0.061684765 GPGPGQGS(ph)PGGGPGPR ddPTM_K562_Paclitaxel_30min_R1 1 GPGPGQGSPGGGPGPR 16 0 Q8IYL2;H0YDS2 Q8IYL2 TRMT44 Probable tRNA (uracil-O(2)-)-methyltransferase 1 GPGPGQGS(1)PGGGPGPR 149.86 1.51E-07 8048300 1445.5 1322 1949.8 1378.9 1212.4 1427.2 1200.7 1445.1 1194.6 1413.5 TRUE FALSE 1465.74146 1466.340431 1457.548875 1290.463526 1377.549406 1680.293881 1428.526557 1322.329735 1309.346668 1125.427924 1.3023859 1.302918116 1.295106371 1.146642533 1.224022771 1.493026648 1.269318564 1.174957282 1.163421166 1 10.13625795 -8.903377639 1.349959878 1.007557569 1.288517548 0.529817074 0.084637491 0.35043237 1.414953396 0.085823797 0.026360797 1.25E-09 8.903377639 0.280959979 GPGQPS(ph)SPQRLDR ddPTM_K562_Paclitaxel_30min_R1 1 GPGQPSSPQRLDR 13 1 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 GPGQPS(0.5)S(0.5)PQRLDR 79.614 0.023466 34803000 1507.9 1224.1 1462.7 1089.4 991.76 1111.9 958.8 1270 970.31 1288.6 TRUE FALSE 1529.015252 1357.751378 1093.423295 1019.53076 1126.854503 1309.079853 1140.727295 1162.105573 1063.512611 1025.982613 1.490293533 1.323366849 1.065732773 0.993711538 1.098317348 1.275927912 1.111838817 1.132675699 1.036579566 1 10.00279057 -5.571458916 3.196417459 1.098573701 1.472231639 0.741076366 0.077663783 0.130178931 2.584303447 0.021814095 0.083601235 2.68E-06 5.571458916 0.373657938 GPHHLDNS(ph)SPGPGSEAR ddPTM_K562_Paclitaxel_30min_R1 2 GPHHLDNSSPGPGSEAR 17 0 H3BUF6;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 GPHHLDNS(0.863)S(0.137)PGPGSEAR;GPHHLDNS(0.5)S(0.5)PGPGSEAR 167.53 3.27E-08 8062500 2347.27 2094.23 2334.37 2281.19 2367.24 2192.06 2179.72 2923.19 1991.7 2743.57 TRUE FALSE 2380.139022 2322.885114 1745.029422 2134.884684 2689.698166 2580.791063 2593.310491 2674.846764 2183.011684 2184.428928 1.089593253 1.063383241 0.798849255 0.977319361 1.231304956 1.181448858 1.187180072 1.224506199 0.999351206 1 11.09304045 -6.744202625 24.49958725 1.153225437 0.974976172 0.332551534 0.1059534 203.4018918 289105.0124 0.031693963 0.040808357 1.80E-07 6.744202625 -0.178249265 GPHHLDNSS(ph)PGPGSEAR ddPTM_K562_Paclitaxel_30min_R1 1 GPHHLDNSSPGPGSEAR 17 0 H3BUF6;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 GPHHLDNS(0.239)S(0.759)PGPGS(0.002)EAR 157.88 9.65E-08 2257400 939.75 919.13 1159.2 1055.5 814.64 950.04 1162.3 1069.9 613.86 1465.9 TRUE FALSE 952.9093994 1019.483722 866.5456232 987.8049542 925.60776 1118.516255 1382.840357 979.0053169 672.8239958 1167.148775 0.816442102 0.873482236 0.742446586 0.846340223 0.793050363 0.958332201 1.184802132 0.838800792 0.576468065 1 10.18877276 -7.255469554 24.58866552 0.918675781 0.81541964 0.09925254 0.145825059 1024.584239 4220085.227 0.051686184 0.05035166 5.55E-08 7.255469554 -0.103256141 GPKPEPPGS(ph)GSPAPPR ddPTM_K562_Paclitaxel_30min_R1 2 GPKPEPPGSGSPAPPR 16 1 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 GPKPEPPGS(0.874)GS(0.126)PAPPR;GPKPEPPGS(0.5)GS(0.5)PAPPR 103.9 0.0015551 109229000 5186.2 6116.4 9308.9 7175.4 5236.2 5145.5 5082.6 6660.5 5057.3 8554.7 TRUE FALSE 5258.822801 6784.209236 6958.753064 6715.20196 5949.45909 6057.982179 6046.996817 6094.648951 5543.076262 6811.247444 0.772079247 0.996030359 1.021656183 0.985898988 0.873475694 0.889408618 0.887795792 0.894791887 0.813812199 1 12.73370333 -6.771626293 24.94398325 0.887492437 0.953191492 0.087458875 0.076638279 403.5383934 988112.9166 0.023526338 0.026972855 1.69E-07 6.771626293 0.065699056 GPLTDPGAS(ph)PSNGCQDSTDTESNHEDR ddPTM_K562_Paclitaxel_30min_R1 1 GPLTDPGASPSNGCQDSTDTESNHEDR 27 0 F8VPL6;Q9H2S9-2;Q9H2S9 F8VPL6 IKZF4 Zinc finger protein Eos 1 GPLT(0.003)DPGAS(0.843)PS(0.154)NGCQDSTDTESNHEDR 137.04 5.72E-19 14831000 2668.4 3172.9 3792.2 3879.5 3184.2 3128.8 3099.9 3495.4 1931.9 3428.5 TRUE FALSE 2705.765833 3519.327952 2834.812209 3630.686234 3617.941949 3683.648749 3688.089842 3198.443952 2117.467627 2729.769818 0.99120659 1.289239821 1.038480311 1.33003384 1.32536521 1.349435665 1.351062576 1.171689983 0.775694571 1 11.41456359 -8.641939251 5.568004765 0.893176707 1.245396511 0.527355423 0.130801853 0.155636446 6.787812188 0.093939977 0.033686733 2.28E-09 8.641939251 0.352219805 GPLTDPGASPS(ph)NGCQDSTDTESNHEDR ddPTM_K562_Paclitaxel_30min_R1 1 GPLTDPGASPSNGCQDSTDTESNHEDR 27 0 F8VPL6;Q9H2S9-2;Q9H2S9 F8VPL6 IKZF4 Zinc finger protein Eos 1 GPLT(0.002)DPGAS(0.202)PS(0.73)NGCQDS(0.048)T(0.015)DT(0.002)ES(0.002)NHEDR 80.813 1.44E-05 13979000 1740.1 1810.6 2226.1 2495 2072.5 1982.5 1687.9 1804.8 1202.2 2142.5 TRUE FALSE 1764.466769 2008.287431 1664.093523 2334.981867 2354.809588 2334.068539 2008.170214 1651.470975 1317.676682 1705.857324 1.034357765 1.177289216 0.975517413 1.368802557 1.380425874 1.36826715 1.177220501 0.968117879 0.772442492 1 10.73628127 -8.30834923 3.377992809 0.884412046 1.222228283 0.496067925 0.139169597 0.219709709 5.086797139 0.091807155 0.04126469 4.92E-09 8.30834923 0.337816237 GPPASS(ph)PAPAPK ddPTM_K562_Paclitaxel_30min_R1 1 GPPASSPAPAPK 12 0 H0Y2Y8;Q15942-2;Q15942;H7C3D3 H0Y2Y8 ZYX Zyxin 1 GPPAS(0.033)S(0.967)PAPAPK 132.5 0.00062072 209390000 4986.5 4479.4 6871.4 5046.1 4176.7 3948.9 3964.3 5307.9 4271.5 6217.3 TRUE FALSE 5056.326385 4968.47604 5136.630086 4722.465732 4745.637252 4649.18197 4716.50523 4856.960764 4681.796661 4950.210847 1.021436569 1.003689781 1.037658848 0.953992845 0.958673761 0.939188676 0.952788755 0.981162402 0.945777221 1 12.27327426 -6.269144237 24.93357196 0.959440189 1.019204538 0.684899694 0.018369833 292.9040311 947861.8252 0.004937366 0.007480331 5.38E-07 6.269144237 0.059764349 GPPDFS(ph)S(ph)DEEREPTPVLGSGAAAAGR ddPTM_K562_Paclitaxel_30min_R1 1 GPPDFSSDEEREPTPVLGSGAAAAGR 26 1 G5E972;P42167;P42167-3;P42167-2;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 2 GPPDFS(0.995)S(0.996)DEEREPT(0.008)PVLGS(0.002)GAAAAGR 56.298 0.0095188 441760000 1703.3 1316.3 1789.4 1425.8 1161.1 1311.8 1396.6 1323.5 1208.1 1503.7 TRUE FALSE 1727.151455 1460.018085 1337.643839 1334.35557 1319.261478 1544.429311 1661.597559 1211.060414 1324.143403 1197.245115 1.442604722 1.219481347 1.117268154 1.114521624 1.101914271 1.289985896 1.387850774 1.011539241 1.105991903 1 10.22550283 -2.01424648 0.023727711 1.46E-06 2.761849536 0.297593453 0.120402585 3426.803037 6.284178862 256.6550472 516.510459 0.009677285 2.01424648 2.761848076 GPPDFS(ph)SDEEREPTPVLGSGAAAAGR ddPTM_K562_Paclitaxel_30min_R1 3 GPPDFSSDEEREPTPVLGSGAAAAGR 26 1 G5E972;P42167;P42167-3;P42167-2;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 GPPDFS(0.826)S(0.174)DEEREPTPVLGSGAAAAGR;GPPDFS(0.935)S(0.064)DEEREPT(0.001)PVLGSGAAAAGR;GPPDFS(0.841)S(0.159)DEEREPTPVLGSGAAAAGR 91.091 4.01E-05 1638215000 873.66 777.48 1105.61 1210.02 967.99 741.19 550.225 1049.92 728.12 742.92 TRUE FALSE 885.8939355 862.3678957 826.4850815 1132.414733 1099.846626 872.6296397 654.6273214 960.7227426 798.0591793 591.5124962 1.497675774 1.457903089 1.397240273 1.914439239 1.859380205 1.475251403 1.106700747 1.62417996 1.349183972 1 9.208264837 -9.343965348 0.531803601 0.985555878 1.591626525 0.388547683 0.213660841 1.728364565 0.995837107 0.313766533 0.117853632 4.53E-10 9.343965348 0.606070646 GPPDFSSDEEREPT(ph)PVLGSGAAAAGR ddPTM_K562_Paclitaxel_30min_R1 3 GPPDFSSDEEREPTPVLGSGAAAAGR 26 1 G5E972;P42167;P42167-3;P42167-2;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 GPPDFS(0.001)S(0.001)DEEREPT(0.988)PVLGS(0.01)GAAAAGR;GPPDFS(0.004)S(0.004)DEEREPT(0.925)PVLGS(0.067)GAAAAGR;GPPDFS(0.009)S(0.008)DEEREPT(0.956)PVLGS(0.028)GAAAAGR 86.182 0.00041644 421355000 3549.46 3934.8 4087.83 4186.46 3449.85 3760.3 3960.99 4380.66 3703.92 4617.17 TRUE FALSE 3599.163391 4364.414771 3055.806759 3917.959194 3919.777976 4427.136408 4712.567175 4008.49559 4059.698066 3676.18822 0.979047637 1.187212001 0.831243281 1.065766756 1.066261503 1.204273596 1.281916728 1.090394547 1.104322691 1 11.84399492 -6.94356876 2.845323486 1.149922049 1.014087344 0.210476364 0.107826389 0.389835779 6.42002601 0.0362723 0.040852174 1.14E-07 6.94356876 -0.135834705 GPPEDRDAEPQPGS(ph)PAAESLEEPDAAAGLSSTK ddPTM_K562_Paclitaxel_30min_R1 2 GPPEDRDAEPQPGSPAAESLEEPDAAAGLSSTK 33 1 Q9H9J4-2;Q9H9J4;C9JPC9 Q9H9J4-2 USP42 Ubiquitin carboxyl-terminal hydrolase 42 1 GPPEDRDAEPQPGS(0.879)PAAES(0.121)LEEPDAAAGLSSTK;GPPEDRDAEPQPGS(0.675)PAAES(0.324)LEEPDAAAGLSSTK 70.578 5.90E-05 52244000 1360.95 1475.75 2502 1550.34 1247.74 1244.77 1257.34 1713.26 922.01 2160.23 TRUE FALSE 1380.007499 1636.877376 1870.339156 1450.908131 1417.703312 1465.512482 1495.913701 1567.707869 1010.57318 1719.97394 0.802342098 0.951687312 1.087422961 0.84356402 0.8242586 0.85205505 0.869730445 0.911471873 0.587551449 1 10.74817099 -6.47147163 24.99498883 0.838012678 0.950586027 0.146813604 0.116816598 627.495369 305097.9239 0.032030086 0.04750773 3.38E-07 6.47147163 0.112573348 GPPGPALPATMNNS(ph)SSETR ddPTM_K562_Paclitaxel_30min_R1 2 GPPGPALPATMNNSSSETR 19 0 Q15003;C9JZP1 Q15003 NCAPH Condensin complex subunit 2 1 GPPGPALPAT(0.06)MNNS(0.912)S(0.026)S(0.001)ET(0.002)R;GPPGPALPATMNNS(0.851)S(0.14)S(0.009)ETR 177.41 2.68E-14 14060000 2114.43 1939.21 2294.99 2151.13 1834.75 2094.26 1899.32 2083.36 1597.81 2281.43 TRUE FALSE 2144.038544 2150.939506 1715.59139 2013.16615 2084.674013 2465.647606 2259.706055 1906.365564 1751.28679 1816.473314 1.180330329 1.184129428 0.944462755 1.108282811 1.147649127 1.357381684 1.244007296 1.04948724 0.96411369 1 10.82692446 -8.47591225 5.315633533 0.988046811 1.162804235 0.374092298 0.098441646 0.238727766 16.02381645 0.066073711 0.029217473 3.34E-09 8.47591225 0.174757423 GPPPSYGGSSRYDDYSSS(ph)RDGYGGSR ddPTM_K562_Paclitaxel_30min_R1 1 GPPPSYGGSSRYDDYSSSRDGYGGSR 26 2 P38159;P38159-2;H3BUY5;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 GPPPSYGGSSRYDDY(0.01)S(0.29)S(0.29)S(0.408)RDGY(0.001)GGS(0.001)R 70.535 0.0053779 8606000 754.91 780.9 679.3 944.04 933.77 725.52 616.56 696.6 1517.5 638.55 TRUE FALSE 765.4810691 866.1613028 507.8023135 883.4934998 1060.965283 854.1807852 733.5490413 637.419482 1663.262655 508.4131595 1.505627962 1.703656341 0.998798524 1.737747112 2.086817115 1.68009181 1.442820721 1.253743083 3.271478372 1 8.989857563 -6.490700999 23.97239578 1.791185225 1.422037412 0.077769221 0.599383972 1121.095636 835214.1347 0.163803428 0.242658585 3.23E-07 6.490700999 -0.369147814 GPPQS(ph)PVFEGVYNNSR ddPTM_K562_Paclitaxel_30min_R1 2 GPPQSPVFEGVYNNSR 16 0 H3BUF6;Q8WWM7-7;H3BSK9;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 GPPQS(1)PVFEGVYNNSR;GPPQS(1)PVFEGVYNNSR 201.22 2.53E-13 898000000 2815.2 2675.6 2960.5 2775 3067.3 2899.9 2756.1 3299.1 2129.95 3078.4 TRUE FALSE 2854.621486 2967.731056 2213.08516 2597.02392 3485.11819 3414.156548 3279.055587 3018.820863 2334.541214 2451.02039 1.16466656 1.210814511 0.90292401 1.059568468 1.421905017 1.39295314 1.337832847 1.231658812 0.952477272 1 11.25916677 -4.984204621 15.80900597 1.183903798 1.130513222 0 0.175736407 31674503.89 674807863.1 0.047348241 38554052.09 1.04E-05 4.984204621 -0.053390576 GPPQSPVFEGVY(ph)NNSR ddPTM_K562_Paclitaxel_30min_R1 2 GPPQSPVFEGVYNNSR 16 0 H3BUF6;Q8WWM7-7;H3BSK9;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 GPPQS(0.134)PVFEGVY(0.865)NNS(0.001)R;GPPQS(0.016)PVFEGVY(0.982)NNS(0.001)R 110.93 0.0018753 819000000 2361.22 2270.64 2807 2788.3 2443.8 2086.32 2560.23 2570.04 1878.87 2807.9 TRUE FALSE 2394.284365 2518.556154 2098.338133 2609.470918 2776.686934 2456.299559 3046.020277 2351.69906 2059.343859 2235.648439 1.070957456 1.126543919 0.938581441 1.167209868 1.242005177 1.098696698 1.362477313 1.051909155 0.921139399 1 11.12647762 -8.52115702 24.68519547 0.969221121 1.143101396 0.328915766 0.105369468 72.6540463 1041784.045 0.071249448 0.027823738 3.01E-09 8.52115702 0.173880275 GPPS(ph)PPAPVMHS(ph)PSR ddPTM_K562_Paclitaxel_30min_R1 2 GPPSPPAPVMHSPSR 15 0 G3V4X8;G3V3A4;Q13573 G3V4X8 SNW1 SNW domain-containing protein 1 2 GPPS(1)PPAPVMHS(0.974)PS(0.026)R;GPPS(1)PPAPVMHS(0.959)PS(0.041)R 117.23 0.0024282 713250000 4077.2 3727.2 4772.7 4608.4 4020.1 3986.9 3379.7 4057.5 4374.2 4471.9 TRUE FALSE 4134.293379 4134.148301 3567.772857 4312.83785 4567.705681 4693.920736 4020.980432 3712.790049 4794.361454 3560.524325 1.161147348 1.161106602 1.002035805 1.211292904 1.282874449 1.318322895 1.129322556 1.042764972 1.346532425 1 11.79787399 GPPS(ph)PPAPVMHS(ph)PSRK ddPTM_K562_Paclitaxel_30min_R1 3 GPPSPPAPVMHSPSRK 16 1 G3V4X8;G3V3A4;Q13573 G3V4X8 SNW1 SNW domain-containing protein 1 2 GPPS(1)PPAPVMHS(0.5)PS(0.5)RK;GPPS(1)PPAPVMHS(0.93)PS(0.07)RK;GPPS(1)PPAPVMHS(0.5)PS(0.5)RK 138.77 6.40E-09 363127000 9836.1 8174.4 15394.1 10938.3 8866.5 7919.1 7574.6 10615.8 9854.2 12325.8 TRUE FALSE 9973.835747 9066.908636 11507.66906 10236.7664 10074.26741 9323.441195 9011.840808 9713.921528 10800.73994 9813.795194 1.016307713 0.923894218 1.172601306 1.043099656 1.026541436 0.950034213 0.918282951 0.989823135 1.100567082 1 13.26059545 -7.063083183 7.556512825 0.986530914 1.039668141 0.089418449 0.071288126 0.718214014 77.01011189 0.024614161 0.024745923 8.65E-08 7.063083183 0.053137227 GPPS(ph)PPAPVMHSPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 GPPSPPAPVMHSPSR 15 0 G3V4X8;G3V3A4;Q13573 G3V4X8 SNW1 SNW domain-containing protein 1 2 GPPS(1)PPAPVMHS(0.297)PS(0.703)R 80.277 0.023419 12487000 1290.2 1175.7 1662.9 1256 1487.8 1331.8 1537.8 1627.5 1088.7 1616.9 TRUE FALSE 1308.266781 1304.066902 1243.080329 1175.445782 1690.463549 1567.976031 1829.589522 1489.233716 1193.274499 1287.374892 1.016228286 1.012965927 0.965593112 0.91305632 1.313108993 1.217963811 1.421178503 1.156798789 0.926905213 1 10.33021652 -6.752883191 24.99833605 1.195190356 0.978720695 0.325523809 0.135686391 213.5442576 623902.1189 0.04168132 0.052933975 1.77E-07 6.752883191 -0.216469661 GPPS(ph)PPAPVMHSPSR ddPTM_K562_Paclitaxel_30min_R1 3 GPPSPPAPVMHSPSR 15 0 G3V4X8;G3V3A4;Q13573 G3V4X8 SNW1 SNW domain-containing protein 1 1 GPPS(1)PPAPVMHSPSR;GPPS(1)PPAPVMHSPSR;GPPS(1)PPAPVMHSPSR 139.74 1.47E-06 270193000 4539.4 4368.1 4853.7 4187.7 4483.7 4876.6 4275.6 5157.5 3037.25 5283.2 TRUE FALSE 4602.965605 4845.02393 3628.323405 3919.119665 5094.45585 5741.396539 5086.87278 4719.338183 3328.991433 4206.48094 1.094255667 1.151799806 0.862555532 0.931686063 1.211096858 1.364893036 1.209294147 1.121920734 0.79139582 1 12.03839809 -8.744323847 24.87357646 0.895697959 1.119127745 0.282700456 0.14191699 283.2273055 411611.007 0.108203437 0.040669118 1.80E-09 8.744323847 0.223429786 GPPS(ph)PPAPVMHSPSRK ddPTM_K562_Paclitaxel_30min_R1 2 GPPSPPAPVMHSPSRK 16 1 G3V4X8;G3V3A4;Q13573 G3V4X8 SNW1 SNW domain-containing protein 1 1 GPPS(1)PPAPVMHSPSRK;GPPS(1)PPAPVMHSPSRK 64.331 0.02105 74062000 5210 4386.8 8037.8 5136.8 5060.7 5031.8 3671.5 5744.9 3483 7015.6 TRUE FALSE 5282.956074 4865.765659 6008.55798 4807.348639 5750.053018 5924.11908 4368.147958 5256.834886 3817.557712 5585.816869 0.945780393 0.871092944 1.075681162 0.860634846 1.029402351 1.060564501 0.782007012 0.941104052 0.683437678 1 12.44755256 -7.768411632 24.99999471 0.846729195 0.971194542 0.247753241 0.104131611 230.9539799 828108.4614 0.040763294 0.028156438 1.70E-08 7.768411632 0.124465347 GPPS(ph)PRPAGPTPR ddPTM_K562_Paclitaxel_30min_R1 1 GPPSPRPAGPTPR 13 1 Q14681 Q14681 KCTD2 BTB/POZ domain-containing protein KCTD2 1 GPPS(0.996)PRPAGPT(0.004)PR 71.513 0.029133 0 1008.4 913.86 1006.7 944.79 1016.2 843.33 1043.3 1239.6 609.41 1220.9 TRUE FALSE 1022.520711 1013.638325 752.5461343 884.1953981 1154.623644 992.8827346 1241.260729 1134.288243 667.9465534 972.0799098 1.051889563 1.042752057 0.774160773 0.909591268 1.187786758 1.021400324 1.276912233 1.166867282 0.687131322 1 9.924931105 -5.547145075 24.99621276 1.015034082 1.049606167 0.006723633 0.172744638 2075.180051 2137590.812 0.046149392 0.122105398 2.84E-06 5.547145075 0.034572085 GPPS(ph)RGGHMDDGGYSMNFNMSSSR ddPTM_K562_Paclitaxel_30min_R1 2 GPPSRGGHMDDGGYSMNFNMSSSR 24 1 P38159;P38159-2;H0Y6E7;H3BT71;A0A1B0GUK8;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 GPPS(0.996)RGGHMDDGGY(0.002)S(0.001)MNFNMSSSR;GPPS(1)RGGHMDDGGYSMNFNMSSSR 80.41 0.00020151 45866000 1195.32 1111.39 1279.07 1239.76 1012.94 1020.14 1261.51 1464.01 1034.86 1419.56 TRUE FALSE 1212.058168 1232.735319 956.1529592 1160.247343 1150.919577 1201.047506 1500.874937 1339.633212 1134.262927 1130.252893 1.072377851 1.09067212 0.845963735 1.026537822 1.018285009 1.062636082 1.327910724 1.185250859 1.003547909 1 10.14242989 -7.532139237 24.99548518 1.151851874 1.0102802 0.202208653 0.107150611 279.7361704 755042.7945 0.041422553 0.032127778 2.94E-08 7.532139237 -0.141571674 GPPVT(ph)PSSEKR ddPTM_K562_Paclitaxel_30min_R1 1 GPPVTPSSEKR 11 1 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 GPPVT(0.97)PS(0.015)S(0.015)EKR 85.924 0.023752 0 1263.2 1104.1 1914.5 1513 1483.8 1233.8 1216.4 1679.9 1659.6 1658.8 TRUE FALSE 1280.888697 1224.649372 1431.160797 1415.962952 1685.918681 1452.597107 1447.20555 1537.182009 1819.011995 1320.735649 0.969829729 0.927247911 1.083608819 1.072101713 1.276499716 1.099839402 1.095757164 1.163883181 1.377271823 1 10.36712602 -6.060126004 1.643842418 1.167674603 0.94266687 0.393803332 0.101374616 0.394916268 2.037084434 0.030760993 0.086043729 8.71E-07 6.060126004 -0.225007733 GPQPPTVS(ph)PIR ddPTM_K562_Paclitaxel_30min_R1 2 GPQPPTVSPIR 11 0 P46087-2;P46087;P46087-4 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 GPQPPTVS(1)PIR;GPQPPT(0.004)VS(0.996)PIR 116.9 0.003854 493870000 3200.9 3063.8 2770.7 3381.6 3402.6 3085.1 2967.3 3674.5 1904.09 3463.9 TRUE FALSE 3245.722476 3398.316045 2071.202517 3164.719311 3866.091726 3632.199168 3530.329685 3362.328289 2086.986352 2757.955279 1.176858269 1.232186784 0.75099206 1.147487538 1.40179638 1.316989872 1.280053274 1.219138075 0.756715081 1 11.42938335 -8.750786267 24.9928418 0.878357535 1.190200457 0.345229041 0.172053026 222.807971 522729.2155 0.128767667 0.047565887 1.78E-09 8.750786267 0.311842922 GPS(ph)PSPVGSPASVAQSR ddPTM_K562_Paclitaxel_30min_R1 3 GPSPSPVGSPASVAQSR 17 0 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;A0A087WUV6 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 GPS(0.974)PS(0.026)PVGSPASVAQSR;GPS(0.76)PS(0.239)PVGSPASVAQSR;GPS(0.988)PS(0.012)PVGSPASVAQSR 289.5 6.08E-154 514353000 2634.39 2777.62 2976.19 2913.59 2438.66 2593.66 2861 3532.3 2232.09 3595.08 TRUE FALSE 2671.279588 3080.889945 2224.814025 2726.725378 2770.846779 3053.609184 3403.859815 3232.209067 2446.492218 2862.400723 0.933230476 1.07633076 0.777254564 0.952600856 0.96801498 1.066800033 1.189162575 1.129195169 0.854699413 1 11.48300994 -7.147553438 3.440539713 1.064905386 0.935969062 0.196611886 0.106409487 0.385166827 8.458773518 0.037642181 0.037642725 7.12E-08 7.147553438 -0.128936324 GPS(ph)PSS(ph)PTPPAAAAPAEQAPR ddPTM_K562_Paclitaxel_30min_R1 2 GPSPSSPTPPAAAAPAEQAPR 21 0 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 2 GPS(0.992)PS(0.016)S(0.88)PT(0.113)PPAAAAPAEQAPR;GPS(0.988)PS(0.03)S(0.97)PT(0.012)PPAAAAPAEQAPR 157.62 6.71E-17 84077000 3090.1 2977.8 3888.6 2859.7 2940.7 2557.6 2579 3419.5 2605.8 3205.4 TRUE FALSE 3133.370934 3302.926274 2906.874836 2676.291642 3341.273126 3011.15445 3068.351787 3128.992131 2856.098733 2552.137721 1.227743671 1.294180266 1.138996071 1.04864703 1.309205651 1.179855783 1.202267324 1.226027932 1.119100552 1 11.31749047 -9.040476115 3.540196172 1.000234532 1.201448813 0.447543671 0.070268866 0.230194367 7.701389467 0.069422182 0.018358932 9.11E-10 9.040476115 0.201214281 GPS(ph)WDPFR ddPTM_K562_Paclitaxel_30min_R1 1 GPSWDPFR 8 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 1 GPS(1)WDPFR 96.665 0.015152 6436200 4959 5198.4 6345 5516.3 5220.2 4690.3 5347.3 6226.1 2520.3 8513.3 TRUE FALSE 5028.4413 5765.978892 4743.126276 5162.509208 5931.279619 5522.05885 6361.92226 5697.153943 2762.386076 6778.284787 0.741845682 0.850654564 0.699753171 0.761624713 0.875041372 0.814669053 0.938574058 0.840500823 0.407534673 1 12.72670454 -5.148438329 18.21727719 0.796725555 0.741743699 0.012092806 0.153240563 177028.4672 28408433.01 0.036985162 1858.309747 7.10E-06 5.148438329 -0.054981856 GPSPPLNGNILSCS(ph)PDRR ddPTM_K562_Paclitaxel_30min_R1 1 GPSPPLNGNILSCSPDRR 18 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 GPSPPLNGNILS(0.248)CS(0.752)PDRR 83.758 0.013288 22640000 1356.1 1191.1 1668.5 1597.6 1394.8 1327.2 1415.2 1646 1209.2 1745.7 TRUE FALSE 1375.089584 1321.148326 1247.266539 1495.137087 1584.795374 1562.560285 1683.726812 1506.162026 1325.349063 1389.925382 0.989326191 0.950517447 0.897362229 1.075695938 1.140201765 1.12420444 1.211379283 1.083627974 0.953539723 1 10.44079172 -6.35835182 5.633893844 1.098422546 0.946835825 0.436156358 0.071080976 0.200381303 9.380314504 0.020966327 0.031426272 4.38E-07 6.35835182 -0.15158672 GPSPSS(ph)PTPPAAAAPAEQAPR ddPTM_K562_Paclitaxel_30min_R1 2 GPSPSSPTPPAAAAPAEQAPR 21 0 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 GPS(0.008)PS(0.026)S(0.966)PT(0.001)PPAAAAPAEQAPR;GPSPS(0.024)S(0.976)PTPPAAAAPAEQAPR 290.94 3.85E-170 98157000 3471.7 3351.8 3843.9 4296.5 3648.6 3721.5 3453.5 3785.1 3571.8 3656.9 TRUE FALSE 3520.314511 3717.760859 2873.459904 4020.94172 4145.601091 4381.455773 4108.783597 3463.532129 3914.887349 2911.621773 1.209056253 1.276869439 0.98689326 1.38099727 1.423811681 1.504816255 1.411166668 1.189554276 1.344572769 1 11.50760724 -6.303453496 24.98576426 1.345587763 1.169532378 0.187860665 0.150746799 701.9160294 417427.4721 0.042043902 0.062361925 4.97E-07 6.303453496 -0.176055385 GPSQEEEDNHS(ph)DEEDRASEPK ddPTM_K562_Paclitaxel_30min_R1 2 GPSQEEEDNHSDEEDRASEPK 21 1 E7ERS3;Q86VM9;H3BPD0 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 GPSQEEEDNHS(1)DEEDRASEPK;GPSQEEEDNHS(1)DEEDRASEPK 86.573 0.00065153 93128000 3205 2767.3 5003.4 3899.3 2822 2938.6 2802.9 3303.7 2145.5 4585.3 TRUE FALSE 3249.879888 3069.443172 3740.229789 3649.216351 3206.404177 3459.71945 3334.735643 3023.030064 2351.584861 3650.813343 0.89017969 0.840755986 1.024492199 0.999562565 0.878271189 0.947657172 0.913422662 0.828042899 0.644126292 1 11.83400219 -8.283211229 4.025968652 0.798045057 0.930623981 0.189187375 0.095497883 0.2973284 11.22509441 0.052712467 0.025192809 5.21E-09 8.283211229 0.132578925 GPSS(ph)PPTTTAPMR ddPTM_K562_Paclitaxel_30min_R1 2 GPSSPPTTTAPMR 13 0 Q9NXL9-4;Q9NXL9 Q9NXL9-4 MCM9 DNA helicase MCM9 1 GPS(0.031)S(0.951)PPT(0.001)T(0.01)T(0.007)APMR;GPS(0.381)S(0.612)PPTT(0.006)T(0.001)APMR 128.57 0.00060393 32818000 4020 3837.3 5167.9 4560.3 3765.5 3826.3 4096.5 4431.3 3717.9 4662.8 TRUE FALSE 4076.292403 4256.269391 3863.199729 4267.822769 4278.42485 4504.840581 4873.78949 4054.833406 4075.020907 3712.518801 1.097985659 1.146464064 1.04058725 1.149576069 1.152431834 1.213418927 1.312798602 1.092205487 1.097643171 1 11.85818262 -5.258276282 21.03712775 1.143012326 1.097985527 0.005923304 0.083373444 175.2586959 1164985.451 0.021401952 0.143334918 5.52E-06 5.258276282 -0.0450268 GPTSS(ph)PCEEEGDEGEEDR ddPTM_K562_Paclitaxel_30min_R1 1 GPTSSPCEEEGDEGEEDR 18 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 GPT(0.004)S(0.077)S(0.919)PCEEEGDEGEEDR 86.777 0.0099012 0 437.91 321.26 613.52 495.68 550.01 410.7 336.51 519.61 327.86 733.34 TRUE FALSE 444.0420911 356.3362532 458.6292881 463.8893034 624.9306737 483.5318785 400.3610158 475.4658872 359.3524179 583.8849055 0.760495925 0.610285092 0.785478925 0.794487576 1.070297704 0.828128753 0.685684819 0.814314401 0.615450776 1 9.189540205 -5.936962342 6.052875826 0.823474732 0.685785632 0.16199458 0.129088677 0.373925539 26.17619512 0.0347797 0.073645077 1.16E-06 5.936962342 -0.1376891 GPTSSPCEEEGDEGEEDRT(ph)S(ph)DLRDEASSVTR ddPTM_K562_Paclitaxel_30min_R1 1 GPTSSPCEEEGDEGEEDRTSDLRDEASSVTR 31 2 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 2 GPTSS(0.001)PCEEEGDEGEEDRT(0.997)S(0.997)DLRDEAS(0.002)S(0.001)VT(0.001)R 62.107 0.0011471 25049000 809.68 941.87 1201 1120.6 1077.8 914.81 825.85 995.45 531.93 910.63 TRUE FALSE 821.0180181 1044.706552 897.7926962 1048.729732 1224.614607 1077.038709 982.5507263 910.8803091 583.0242532 725.0431061 1.132371319 1.440888884 1.23826113 1.446437767 1.689023172 1.485482311 1.355161808 1.256311937 0.804123573 1 9.50192296 -8.601802274 3.597108724 0.904650279 1.406288055 0.634883166 0.147699497 0.15377576 3.815432831 0.122232023 0.040800598 2.50E-09 8.601802274 0.501637776 GPTSSPCEEEGDEGEEDRT(ph)SDLRDEASSVTR ddPTM_K562_Paclitaxel_30min_R1 1 GPTSSPCEEEGDEGEEDRTSDLRDEASSVTR 31 2 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 GPT(0.001)S(0.003)S(0.008)PCEEEGDEGEEDRT(0.481)S(0.481)DLRDEAS(0.013)S(0.013)VT(0.001)R 71.794 0.00074529 17845000 325.83 315.01 350.67 299.29 233.18 246.42 245.59 414.86 179.39 251.21 TRUE FALSE 330.3926253 349.4038571 262.1390215 280.094879 264.9430638 290.1191271 292.1894204 379.6150535 196.621211 200.0132641 1.651853575 1.74690343 1.310608187 1.400381521 1.324627469 1.450499438 1.460850218 1.897949395 0.983040859 1 7.643951867 -13.25683943 0.19887861 6.87E-14 1.574951112 0.315858734 0.231058532 84.32954458 1.553760014 35.49705853 0.603022166 5.54E-14 13.25683943 1.574951112 GPTSSPCEEEGDEGEEDRTSDLRDEAS(ph)SVTR ddPTM_K562_Paclitaxel_30min_R1 1 GPTSSPCEEEGDEGEEDRTSDLRDEASSVTR 31 2 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 GPTSSPCEEEGDEGEEDRT(0.04)S(0.109)DLRDEAS(0.357)S(0.357)VT(0.136)R 41.818 0.019498 50588000 526.49 325.94 536.85 510.31 509.18 465.47 660.7 511.01 222.28 672.21 TRUE FALSE 533.8624844 361.5272315 401.3155778 477.5810007 578.5389365 548.014569 786.0643759 467.5965109 243.6309872 535.213233 0.997476242 0.67548261 0.749823721 0.892319119 1.080950359 1.023918198 1.468693835 0.873663957 0.455203594 1 9.063969976 -6.531945099 5.120042746 1.003318461 0.797118811 0.091534459 0.244463404 0.405506429 31.49437811 0.076226594 0.104206019 2.94E-07 6.531945099 -0.206199649 GPTSTSIDNIDGT(ph)PVRDER ddPTM_K562_Paclitaxel_30min_R1 4 GPTSTSIDNIDGTPVRDER 19 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 GPTSTS(0.001)IDNIDGT(0.999)PVRDER;GPTS(0.001)T(0.008)S(0.026)IDNIDGT(0.964)PVRDER;GPTSTSIDNIDGT(1)PVRDER;GPTSTSIDNIDGT(1)PVRDER 173.77 3.18E-13 220367000 11048.6 10401.8 10843.8 10702.2 9374.9 9475 10192 11451.6 10941.9 12614.2 TRUE FALSE 11203.31449 11537.5037 8106.148576 10015.80879 10651.9201 11155.25821 12125.87879 10478.7151 11992.91838 10043.41912 1.115488098 1.148762545 0.807110455 0.997250904 1.060587035 1.110703246 1.207345691 1.043341414 1.194107131 1 13.29396287 -7.072238174 3.171818576 1.119520591 1.012567516 0.153909642 0.102541676 0.466811851 9.165855378 0.036488453 0.037836009 8.47E-08 7.072238174 -0.106953075 GPVLS(ph)LAFSPNGKY(ph)LAS(ph)AGEDQR ddPTM_K562_Paclitaxel_30min_R1 1 GPVLSLAFSPNGKYLASAGEDQR 23 1 O75529 O75529 TAF5L TAF5-like RNA polymerase II p300/CBP-associated factor-associated factor 65 kDa subunit 5L 3 GPVLS(0.826)LAFS(0.186)PNGKY(0.989)LAS(0.999)AGEDQR 42.529 0.030757 18937000 688.92 495.57 740.8 670 668.66 546.12 670.75 518.33 534.9 610.68 TRUE FALSE 698.5670055 549.6780085 553.7758779 627.0291988 759.7428125 642.9667141 798.021311 474.2946312 586.279535 486.2230808 1.436721195 1.130505791 1.138933752 1.289591596 1.562539588 1.322369792 1.641265794 0.975467126 1.205783021 1 8.925474569 -8.293413442 24.99800749 1.067968769 1.346527884 0.41193619 0.163530341 778.0262607 608273.3748 0.09360571 0.044972951 5.09E-09 8.293413442 0.278559116 GPVREGDVLTLLESER ddPTM_K562_Paclitaxel_30min_R1 2 GPVREGDVLTLLESER 16 1 P62857 P62857 RPS28 40S ribosomal protein S28 0 ; 205.33 4.52E-16 48036000 2204.14 2240.2 2503.4 2173.01 2239.27 2473.48 2243.5 2287.64 2416.4 2515.39 FALSE TRUE 2235.00476 2484.792612 1871.385708 2033.642865 2544.296485 2912.116949 2669.192413 2093.290703 2648.506017 2002.752137 1.115966733 1.240689033 0.934407046 1.015424139 1.270400085 1.454057591 1.332762234 1.045207075 1.322433249 1 10.96776817 -6.771029357 24.99851839 1.255330408 1.078182636 0.221084691 0.145605474 292.836554 763344.7713 0.046305483 0.053182688 1.69E-07 6.771029357 -0.177147772 GPVS(ph)PSVSFQPLAR ddPTM_K562_Paclitaxel_30min_R1 2 GPVSPSVSFQPLAR 14 0 Q7Z434-4;Q7Z434 Q7Z434-4 MAVS Mitochondrial antiviral-signaling protein 1 GPVS(0.958)PS(0.042)VS(0.001)FQPLAR;GPVS(0.577)PS(0.396)VS(0.027)FQPLAR 166.79 6.31E-05 155548000 2802.1 2816.1 3115.5 3279.7 3118 2855.3 3212.9 3357 2186.22 3274.9 TRUE FALSE 2841.338045 3123.571321 2328.953493 3069.354721 3542.724388 3361.647365 3822.531003 3071.801896 2396.216199 2607.473582 1.08969006 1.197930189 0.893183927 1.177137418 1.358680837 1.289235445 1.465990309 1.178075942 0.918980049 1 11.34843692 -5.254153834 21.93694801 1.181248318 1.089689833 0.007862292 0.17582476 880.7412784 2651527.014 0.046433129 0.426980298 5.57E-06 5.254153834 -0.091558485 GPVSGS(ph)PDSMNASR ddPTM_K562_Paclitaxel_30min_R1 2 GPVSGSPDSMNASR 14 0 A0A499FJS7;O14920-4;O14920-2;O14920 A0A499FJS7 IKBKB Inhibitor of nuclear factor kappa-B kinase subunit beta 1 GPVS(0.009)GS(0.833)PDS(0.158)MNASR;GPVS(0.01)GS(0.829)PDS(0.161)MNASR 160.63 3.51E-05 54030000 3166.3 3042.76 3824.8 3373.1 3139.1 2785.15 2960.5 3534.4 2475.3 3455.3 TRUE FALSE 3210.637969 3374.978827 2859.181935 3156.764463 3566.698565 3279.057247 3522.23942 3234.130659 2713.063625 2751.107963 1.167034523 1.226770767 1.039283799 1.147452047 1.296458959 1.19190424 1.280298508 1.175573879 0.986171267 1 11.42579704 -8.74279715 6.145038444 0.991115626 1.192539832 0.575599875 0.067893971 0.109729994 14.51953784 0.055298721 0.018357606 1.81E-09 8.74279715 0.201424207 GPVSPS(ph)VSFQPLAR ddPTM_K562_Paclitaxel_30min_R1 1 GPVSPSVSFQPLAR 14 0 Q7Z434-4;Q7Z434 Q7Z434-4 MAVS Mitochondrial antiviral-signaling protein 1 GPVS(0.339)PS(0.65)VS(0.012)FQPLAR 98.654 0.0077885 41646000 1084.6 1025.3 1011.4 1025.2 1113.2 991.92 874.59 943.78 887 1213.6 TRUE FALSE 1099.787746 1137.245721 756.0595612 959.4482606 1264.836687 1167.823085 1040.538887 863.5999981 972.2003132 966.2676538 1.138181271 1.176946902 0.782453555 0.992942542 1.30899206 1.208591719 1.076864037 0.893748223 1.006139768 1 9.916279057 -8.131177909 6.537408249 0.963440035 1.098485197 0.16612671 0.135381755 0.492475596 23.92070417 0.071024036 0.040744464 7.39E-09 8.131177909 0.135045162 GQDPERVTLQDYRLPDS(ph)DDDEDEETAIQR ddPTM_K562_Paclitaxel_30min_R1 2 GQDPERVTLQDYRLPDSDDDEDEETAIQR 29 2 H3BRF9;Q96K21-4;Q96K21-2;Q96K21 H3BRF9 ZFYVE19 Abscission/NoCut checkpoint regulator 1 GQDPERVT(0.002)LQDY(0.106)RLPDS(0.892)DDDEDEETAIQR;GQDPERVT(0.004)LQDY(0.046)RLPDS(0.947)DDDEDEET(0.004)AIQR 75.82 0.00055565 31186500 670.1 681.145 629.07 660.66 670.52 875.58 529.66 720.36 1589.59 537.92 TRUE FALSE 679.4834674 755.5147146 470.2534983 618.2882246 761.856176 1030.851819 630.16022 659.1609217 1742.277222 428.2916087 1.586497269 1.764019419 1.097975045 1.443615079 1.778825829 2.406892403 1.4713345 1.539047014 4.067969548 1 8.742449601 -6.977226708 4.219931977 2.094230605 1.472940255 0.123391866 0.782942936 0.466807218 19.35770348 0.249182576 0.274706075 1.05E-07 6.977226708 -0.62129035 GQDVVQEWQET(ph)SPTREEPAGEQK ddPTM_K562_Paclitaxel_30min_R1 1 GQDVVQEWQETSPTREEPAGEQK 23 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 GQDVVQEWQET(0.443)S(0.443)PT(0.115)REEPAGEQK 76.777 0.0054148 130730000 1778.6 1872.1 3288 2491.8 1608.9 1656.4 1644.2 2500.7 1403.6 3109.2 TRUE FALSE 1803.505887 2076.502209 2457.903735 2331.987101 1828.059419 1950.139283 1956.178367 2288.249926 1538.422051 2475.543333 0.728529314 0.838806649 0.992874454 0.942010212 0.738447756 0.787762128 0.790201626 0.924342505 0.621448242 1 11.27352949 -6.759040907 24.99988478 0.804445655 0.881310204 0.069369954 0.114987569 164.3074555 1712602.195 0.034091623 0.041918129 1.74E-07 6.759040907 0.076864549 GQDVVQEWQET(ph)SPTREEPAGEQKELAPAWEDTSPEQDNR ddPTM_K562_Paclitaxel_30min_R1 1 GQDVVQEWQETSPTREEPAGEQKELAPAWEDTSPEQDNR 39 2 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 GQDVVQEWQET(0.333)S(0.333)PT(0.333)REEPAGEQKELAPAWEDTSPEQDNR 73.509 1.74E-06 29037000 556.09 351.04 867.78 846.54 395.89 351.05 412.1 637.35 554.77 764.77 TRUE FALSE 563.8769757 389.3677343 648.6982064 792.2467134 449.8169205 413.3037885 490.2938237 583.2031393 608.0581373 608.9094542 0.926044048 0.639450959 1.065344284 1.301091169 0.738725466 0.678760669 0.805199887 0.957783025 0.998601899 1 9.250083903 -8.476933206 7.154278596 0.992839127 0.880154609 0.06826783 0.183793077 0.783027607 104.9734328 0.11388631 0.052847157 3.33E-09 8.476933206 -0.112684518 GQEEISGALPVAS(ph)PASSR ddPTM_K562_Paclitaxel_30min_R1 1 GQEEISGALPVASPASSR 18 0 H0Y9D5;H0Y8S9;Q9UBK8;Q9UBK8-1 H0Y9D5 MTRR Methionine synthase reductase 1 GQEEISGALPVAS(0.993)PAS(0.006)S(0.001)R 152.13 1.71E-09 13959000 1006 832.12 1130.4 1071.3 1031.9 979.35 905.46 1101.2 883.73 1384.1 TRUE FALSE 1020.087104 922.9736756 845.0165394 1002.591613 1172.46225 1153.023972 1077.266308 1007.646187 968.6162151 1102.01966 0.925652364 0.837529228 0.766788987 0.909776521 1.063921355 1.046282579 0.977538194 0.914363167 0.878946402 1 10.10593425 -6.523439492 24.9796384 0.979774416 0.842000532 0.493288395 0.062479946 16.92427247 753894.2526 0.020120026 0.026224261 3.00E-07 6.523439492 -0.137773884 GQGESDPLDHEPAVS(ph)PLLPR ddPTM_K562_Paclitaxel_30min_R1 7 GQGESDPLDHEPAVSPLLPR 20 0 P00519-2;P00519 P00519-2 ABL1 Tyrosine-protein kinase ABL1 1 GQGESDPLDHEPAVS(1)PLLPR;GQGESDPLDHEPAVS(1)PLLPR;GQGESDPLDHEPAVS(1)PLLPR;GQGESDPLDHEPAVS(1)PLLPR;GQGESDPLDHEPAVS(1)PLLPR;GQGESDPLDHEPAVS(1)PLLPR;GQGESDPLDHEPAVS(1)PLLPR 113.62 8.33E-05 3267206300 16026.21 16763.4 19275.93 17241.95 17460.38 15704.14 16634.73 19191.55 16382.69 20834.23 TRUE FALSE 16250.62639 18593.6847 14409.48307 16136.1285 19838.77936 18489.04873 19791.08318 17561.10804 17956.32057 16588.20249 0.979649627 1.120898103 0.868658499 0.972747259 1.195957149 1.114590248 1.193081842 1.05865045 1.082475367 1 14.01786994 -6.741335127 24.98713343 1.115029391 0.986815456 0.362029537 0.078930537 260.1223744 323299.068 0.023309643 0.030053853 1.81E-07 6.741335127 -0.128213935 GQGESDPLDHEPAVS(ph)PLLPRK ddPTM_K562_Paclitaxel_30min_R1 2 GQGESDPLDHEPAVSPLLPRK 21 1 P00519-2;P00519 P00519-2 ABL1 Tyrosine-protein kinase ABL1 1 GQGESDPLDHEPAVS(1)PLLPRK;GQGESDPLDHEPAVS(1)PLLPRK 57.414 0.012777 105746000 11142.1 9503.6 15867.6 11735.7 8765.8 8566.7 8554.9 11360.1 14627.2 12927.2 TRUE FALSE 11298.12378 10541.23519 11861.62813 10983.02473 9959.850366 10085.88396 10178.14762 10394.9886 16032.20792 10292.62954 1.097690705 1.024153754 1.152439042 1.067076657 0.967668206 0.97991324 0.98887729 1.009944889 1.557639653 1 13.32932399 GQGTPPS(ph)GPGVVR ddPTM_K562_Paclitaxel_30min_R1 2 GQGTPPSGPGVVR 13 0 A0A669KBI7;Q9UMN6 A0A669KBI7 KMT2B Histone-lysine N-methyltransferase 2B 1 GQGT(0.057)PPS(0.943)GPGVVR;GQGT(0.062)PPS(0.938)GPGVVR 127.32 0.00074598 114814000 5660.8 5865.1 7154.1 5952.6 5743.8 5503.2 5387.5 6394.1 5023.3 6004.4 TRUE FALSE 5740.068665 6505.471452 5347.958974 5570.826879 6526.202803 6479.115251 6409.75 5850.881294 5505.81041 4780.699984 1.200675358 1.360778019 1.118656053 1.165274311 1.365114486 1.355264976 1.340755542 1.223854522 1.151674531 1 12.22300616 -11.09555446 6.672936465 0.999999765 1.25811298 0.412557864 0.090623868 3.39E-07 4.60E-08 0.092794962 0.022506063 8.03E-12 11.09555446 0.258113215 GQHHQQQQAAGGSESHPVPPTAPLT(ph)PLLHGEGASQQPR ddPTM_K562_Paclitaxel_30min_R1 2 GQHHQQQQAAGGSESHPVPPTAPLTPLLHGEGASQQPR 38 0 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 GQHHQQQQAAGGSESHPVPPT(0.081)APLT(0.919)PLLHGEGASQQPR;GQHHQQQQAAGGSESHPVPPT(0.004)APLT(0.996)PLLHGEGASQQPR 117.24 6.27E-24 516934000 1324.2 1389.18 1381.53 1710.18 1455.42 1180.44 1699.32 1754.53 1482.3 1740.99 TRUE FALSE 1342.742886 1540.85537 1032.745665 1600.496709 1653.672844 1389.77446 2021.757099 1605.471725 1624.681538 1386.175282 0.968667457 1.111587683 0.745032521 1.154613511 1.192975279 1.002596481 1.458514753 1.158202534 1.172060676 1 10.43689398 -6.484707458 24.17894323 1.178179653 0.957257922 0.32321411 0.145192327 429.8497822 272280.3691 0.039883793 0.059138196 3.28E-07 6.484707458 -0.22092173 GQLTNIVSPTAAT(ph)TPR ddPTM_K562_Paclitaxel_30min_R1 1 GQLTNIVSPTAATTPR 16 0 Q8NEY1-2;Q8NEY1-3;Q8NEY1;Q8NEY1-6;Q8NEY1-5;H0Y6F6 Q8NEY1-2 NAV1 Neuron navigator 1 1 GQLTNIVS(0.093)PT(0.301)AAT(0.346)T(0.26)PR 94.339 0.017152 12214000 1372.4 1310.3 1525 1278.2 1178.1 1022 1100.4 1286 1369.9 1154.6 TRUE FALSE 1391.617834 1453.362985 1139.994889 1196.221973 1338.577165 1203.23735 1309.195156 1176.746273 1501.485016 919.2918862 1.51379323 1.580959222 1.240079355 1.301242827 1.456095921 1.308874111 1.424134353 1.280057282 1.633306068 1 9.844379197 -11.97666449 2.972396104 0.653864028 1.406090299 0.490473432 0.126696548 100984411.6 150896473.4 242006448.5 0.031410772 1.06E-12 11.97666449 0.752226272 GQPEGPLPSSS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 GQPEGPLPSSSPR 13 0 P49815;A0A2R8Y5F1;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;X5D2U8;A0A2R8YGU4;A0A2R8Y6C9;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;P49815-4;H3BQK4 P49815 TSC2 Tuberin 1 GQPEGPLPS(0.01)S(0.231)S(0.76)PR 134.02 0.00023575 58002000 1292.2 1291.9 1548.9 1439.3 1347.3 1449.8 1279.5 1515.8 1101.6 1340.4 TRUE FALSE 1310.294787 1432.954011 1157.861038 1346.98974 1530.82507 1706.901674 1522.278446 1387.023329 1207.413602 1067.225744 1.227757851 1.342690634 1.084926076 1.262141349 1.434396685 1.599382027 1.426388422 1.299653177 1.131357268 1 10.05964966 -8.884675843 2.616057668 1.004556262 1.341831219 0.42685293 0.12962803 0.273656696 3.798026616 0.140186792 0.038469504 1.30E-09 8.884675843 0.337274957 GQPEGPLPSSS(ph)PRS(ph)PSGLRPR ddPTM_K562_Paclitaxel_30min_R1 1 GQPEGPLPSSSPRSPSGLRPR 21 2 P49815;A0A2R8Y5F1;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;X5D2U8;A0A2R8YGU4;A0A2R8Y6C9;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;P49815-4;H3BQK4 P49815 TSC2 Tuberin 2 GQPEGPLPS(0.159)S(0.182)S(0.654)PRS(0.805)PS(0.201)GLRPR 67.655 0.023842 39328000 2939 3031.5 3153.4 2938.6 2768.6 2799 2698.6 3137.7 2755.6 3227.2 TRUE FALSE 2980.155068 3362.489422 2357.285169 2750.131349 3145.730193 3295.36335 3210.645262 2871.1328 3020.287692 2569.494869 1.159821373 1.308618851 0.9174119 1.070300386 1.224260158 1.282494622 1.249523905 1.117391918 1.175440251 1 11.32726906 -4.903424528 16.06193653 1.157827613 1.230848766 0 0.119756791 234500.9165 1198105.951 0.029871666 634906.384 1.25E-05 4.903424528 0.073021153 GQS(ph)SPPPAPPICLR ddPTM_K562_Paclitaxel_30min_R1 1 GQSSPPPAPPICLR 14 0 O43379;O43379-4;H7C3R4;O43379-3;O43379-2 O43379 WDR62 WD repeat-containing protein 62 1 GQS(0.693)S(0.307)PPPAPPICLR 116.9 0.0019365 30969000 2856.1 2406.2 2996.2 3126.3 2948 2947.8 2673.7 2954.8 2401.1 2694 TRUE FALSE 2896.094212 2668.917053 2239.772253 2925.793111 3349.56751 3470.550941 3181.020617 2703.771297 2631.736383 2144.961321 1.350184818 1.244272811 1.044201698 1.364030709 1.561598094 1.618001642 1.483020037 1.260522169 1.226938853 1 11.06673592 -9.001872497 1.772953019 1.005716283 1.374596008 0.354437498 0.155128674 0.484874527 3.470176179 0.172234761 0.04927582 9.96E-10 9.001872497 0.368879725 GQS(ph)SPPPAPPICLRR ddPTM_K562_Paclitaxel_30min_R1 1 GQSSPPPAPPICLRR 15 1 O43379;O43379-4;H7C3R4;O43379-3;O43379-2 O43379 WDR62 WD repeat-containing protein 62 1 GQS(0.626)S(0.374)PPPAPPICLRR 83.204 0.013351 14704000 1856 2133.7 2713.7 2342 2180.7 1884.1 1863.6 2414.3 2377.2 2726.7 TRUE FALSE 1881.989726 2366.664582 2028.592872 2191.794602 2477.74826 2218.218681 2217.208371 2209.190145 2605.540682 2170.997043 0.86687807 1.090127962 0.934406096 1.009579727 1.141295087 1.021751129 1.021285763 1.017592425 1.200158558 1 11.08414205 -4.689800437 2.201330585 1.046036179 4.98E-08 0.344647276 0.073448323 11.2220755 9.661776583 0.019140712 43.48240825 2.04E-05 4.689800437 -1.04603613 GQSPAGDGS(ph)PEPPTPR ddPTM_K562_Paclitaxel_30min_R1 2 GQSPAGDGSPEPPTPR 16 0 A0A0A0MRW6;Q9H6R4-3;Q9H6R4-2;Q9H6R4-4;Q9H6R4 A0A0A0MRW6 NOL6 Nucleolar protein 6 1 GQS(0.109)PAGDGS(0.887)PEPPT(0.003)PR;GQSPAGDGS(0.943)PEPPT(0.057)PR 182.28 4.48E-10 28921000 3774.3 3440.9 3199.3 3376.9 2774.8 3228.6 2819.1 3386.1 3014.5 2985.7 TRUE FALSE 3827.151845 3816.589098 2391.597147 3160.320748 3152.774738 3801.146878 3354.009508 3098.42967 3304.056194 2377.212701 1.60993244 1.605489108 1.006050971 1.329422793 1.326248483 1.598993172 1.410900046 1.303387647 1.389886649 1 11.21505528 -9.998891128 0.919361642 0.994395795 1.398402618 0.323298568 0.173229722 9.279478714 7.341196555 0.356504855 0.058113314 1.00E-10 9.998891128 0.404006823 GQSQS(ph)FQASGLQPR ddPTM_K562_Paclitaxel_30min_R1 1 GQSQSFQASGLQPR 14 0 D6RDI1;D6RHY5;Q96AX9-9;Q96AX9-4;Q96AX9-6;Q96AX9-5;Q96AX9-2;Q96AX9-12;Q96AX9-3;Q96AX9;Q96AX9-11;Q96AX9-13;Q96AX9-14 D6RDI1 MIB2 E3 ubiquitin-protein ligase MIB2 1 GQS(0.039)QS(0.481)FQAS(0.481)GLQPR 85.45 0.02215 89461000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 GQSQTSPDHRSDTS(ph)SPEVR ddPTM_K562_Paclitaxel_30min_R1 1 GQSQTSPDHRSDTSSPEVR 19 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 GQSQTSPDHRS(0.154)DT(0.154)S(0.539)S(0.154)PEVR 61.87 0.020753 708580 251.17 195.73 99.503 188.26 279 57.915 102.95 249.51 232.65 141.62 TRUE FALSE 254.6871549 217.1004633 74.38223701 176.1858462 317.0045235 68.18541208 122.4842251 228.3125681 254.997072 112.7577663 2.258710538 1.92537038 0.659663981 1.562516287 2.811376405 0.604707013 1.086259768 2.024805702 2.261459059 1 6.817082993 -7.287833228 24.98954412 1.440172776 1.76669296 0.090289065 0.682579059 2915.695704 2760553.523 0.256653584 0.226417839 5.15E-08 7.287833228 0.326520183 GQSS(ph)PPPAPPICLR ddPTM_K562_Paclitaxel_30min_R1 1 GQSSPPPAPPICLR 14 0 O43379;O43379-4;H7C3R4;O43379-3;O43379-2 O43379 WDR62 WD repeat-containing protein 62 1 GQS(0.333)S(0.667)PPPAPPICLR 86.262 0.02079 49419000 2023.7 2398.5 2920.4 2643.2 2345.1 2259.4 2159.1 2353.3 2169.8 2355.5 TRUE FALSE 2052.038044 2660.376341 2183.108901 2473.676983 2664.542323 2660.072866 2568.777954 2153.372476 2378.218985 1875.447807 1.094158971 1.418528594 1.164046737 1.318979378 1.420749921 1.41836678 1.369687786 1.148191098 1.268080602 1 10.8730194 -9.228599412 1.074457749 1.003892542 1.314537989 0.381248971 0.113553907 0.873726 1.974485014 0.108308628 0.034591508 5.91E-10 9.228599412 0.310645448 GQSTGKGPPQS(ph)PVFEGVYNNSR ddPTM_K562_Paclitaxel_30min_R1 4 GQSTGKGPPQSPVFEGVYNNSR 22 1 H3BUF6;Q8WWM7-7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 GQSTGKGPPQS(1)PVFEGVYNNSR;GQS(0.002)T(0.013)GKGPPQS(0.985)PVFEGVYNNSR;GQSTGKGPPQS(0.999)PVFEGVY(0.001)NNSR;GQS(0.011)T(0.026)GKGPPQS(0.948)PVFEGVY(0.003)NNS(0.011)R 127.14 6.12E-08 300762000 6352.8 5638.98 9727.3 7442.3 5669.93 6269.4 5019.7 6861.7 11872.5 8271.5 TRUE FALSE 6441.7588 6254.662906 7271.522809 6964.984189 6442.270459 7381.190063 5972.16187 6278.755756 13012.90667 6585.76376 0.978133901 0.94972476 1.10412749 1.057581845 0.978211593 1.120779659 0.906829046 0.953383083 1.975914586 1 12.68513505 -8.709814168 24.99991629 1.487968527 1.008785101 0.417123412 0.227825953 74.79789874 36221.39139 0.138169277 0.052222914 1.95E-09 8.709814168 -0.479183426 GQT(ph)NGDSSLEVLAT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 GQTNGDSSLEVLATR 15 0 A0A087WXJ0 A0A087WXJ0 PDLIM2 2 GQT(0.999)NGDS(0.002)S(0.011)LEVLAT(0.988)R 56.648 0.027187 19525000 773.63 1092.1 713.57 945.53 654.54 957.73 1050 867.42 797.26 1024.9 TRUE FALSE 784.4632069 1211.339171 533.4204282 884.8879378 743.6994295 1127.569968 1249.232019 793.7272567 873.8403853 816.0248174 0.961322732 1.484439131 0.653681624 1.084388512 0.911368642 1.381783917 1.530875032 0.972675389 1.070850257 1 9.672469219 -7.250778062 24.92720391 1.210756518 1.028228406 0.103475693 0.249419529 1670.344686 3905433.479 0.084232706 0.083377752 5.61E-08 7.250778062 -0.182528112 GQTPLT(ph)EGS(ph)EDLDGHS(ph)DPEESFAR ddPTM_K562_Paclitaxel_30min_R1 1 GQTPLTEGSEDLDGHSDPEESFAR 24 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 3 GQT(0.225)PLT(0.943)EGS(0.84)EDLDGHS(0.976)DPEES(0.016)FAR 56.22 0.016173 16440000 1363.9 1062.2 1518.2 1362.8 1353.4 1263.4 1088.1 1516.7 1263.9 1837.3 TRUE FALSE 1382.998808 1178.174588 1134.911633 1275.396108 1537.755993 1487.446251 1294.561295 1387.846868 1385.303242 1462.857251 0.945409271 0.805392725 0.775818442 0.871852743 1.051200308 1.016808885 0.884953944 0.948723375 0.946984568 1 10.51457328 -6.578692393 7.990935641 0.969500251 0.836077631 0.524155085 0.058707923 0.20244377 25.48070501 0.01816745 0.023512681 2.64E-07 6.578692393 -0.13342262 GQTPLT(ph)EGSEDLDGHS(ph)DPEESFAR ddPTM_K562_Paclitaxel_30min_R1 2 GQTPLTEGSEDLDGHSDPEESFAR 24 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 2 GQT(0.05)PLT(0.775)EGS(0.175)EDLDGHS(0.975)DPEES(0.025)FAR;GQT(0.038)PLT(0.906)EGS(0.056)EDLDGHS(0.989)DPEES(0.011)FAR 127.76 4.17E-10 174581000 1893.8 1795.29 2100.04 1878.25 1910.77 1899.8 1759.34 1926.77 1625.22 2310.1 TRUE FALSE 1920.319043 1991.305833 1569.858929 1757.787452 2171.049224 2236.702855 2093.165581 1763.078862 1781.329643 1839.300352 1.044048646 1.082643099 0.853508742 0.955682659 1.180366883 1.216061778 1.138022715 0.95855952 0.968482195 1 10.84494137 -4.920350367 14.56039434 1.043790301 1.047767788 0 0.108417309 1193049.248 341869.1461 0.029253126 149027.6595 1.20E-05 4.920350367 0.003977487 GQTPLTEGS(ph)EDLDGHS(ph)DPEESFAR ddPTM_K562_Paclitaxel_30min_R1 2 GQTPLTEGSEDLDGHSDPEESFAR 24 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 2 GQT(0.004)PLT(0.17)EGS(0.826)EDLDGHS(0.996)DPEES(0.004)FAR;GQT(0.019)PLT(0.226)EGS(0.755)EDLDGHS(0.987)DPEES(0.013)FAR 91.942 0.00036206 29729000 1806.59 1478.81 1731.8 2051.03 1546.94 1458.71 1635.66 1963.92 1806.46 1930.57 TRUE FALSE 1831.887834 1640.271477 1294.585671 1919.486116 1757.659418 1717.391737 1946.017946 1797.072738 1979.978554 1537.118774 1.191767263 1.067107828 0.84221577 1.248755885 1.143476644 1.117279787 1.26601664 1.169117682 1.288110319 1 10.58601293 -6.309900582 24.99998332 1.183090072 1.03703704 0.253010123 0.111640763 496.9959826 256387.2571 0.030816019 0.045707633 4.90E-07 6.309900582 -0.146053032 GQTPLTEGSEDLDGHS(ph)DPEESFAR ddPTM_K562_Paclitaxel_30min_R1 4 GQTPLTEGSEDLDGHSDPEESFAR 24 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 1 GQTPLTEGSEDLDGHS(0.995)DPEES(0.005)FAR;GQTPLTEGSEDLDGHS(0.991)DPEES(0.009)FAR;GQTPLTEGS(0.009)EDLDGHS(0.909)DPEES(0.082)FAR;GQTPLT(0.002)EGS(0.004)EDLDGHS(0.993)DPEES(0.001)FAR 129.35 6.75E-11 445470000 3655.69 3762.44 4060.19 3767.11 3500.18 3464.46 3539.57 4120.27 2917.97 3941.09 TRUE FALSE 3706.880939 4173.235923 3035.144819 3525.504426 3976.963775 4078.833338 4211.18493 3770.227346 3198.254056 3137.893695 1.181327763 1.329948153 0.967255463 1.123525769 1.267399141 1.299863454 1.342041936 1.20151532 1.019235949 1 11.61558076 -8.763734732 5.117965046 1.003094969 1.216435238 0.37888297 0.104983311 0.195195891 14.25747498 0.096521894 0.028885158 1.72E-09 8.763734732 0.213340269 GQY(ph)HTLQAGFSSR ddPTM_K562_Paclitaxel_30min_R1 2 GQYHTLQAGFSSR 13 0 Q9Y446;Q9Y446-2;E9PK71;E9PQ15 Q9Y446 PKP3 Plakophilin-3 1 GQY(1)HTLQAGFSSR;GQY(1)HTLQAGFSSR 141.34 0.00010977 52627000 3654.6 4499.6 5846.8 5552.2 4771 3869.4 4019.4 4440 4456.3 4490.8 TRUE FALSE 3705.775675 4990.881545 4370.703028 5196.106743 5420.890974 4555.583761 4782.060167 4062.794286 4884.347526 3575.572495 1.036414639 1.395827256 1.222378524 1.453223715 1.516090355 1.274085134 1.337425034 1.136263995 1.366032302 1 11.80395854 -10.05066175 0.633201234 0.982547487 1.322920707 0.297564447 0.138027455 6.215951433 2.737366158 0.427337746 0.054733461 8.90E-11 10.05066175 0.340373219 GQYQDHAIDRR ddPTM_K562_Paclitaxel_30min_R1 2 GQYQDHAIDRR 11 1 Q14151 Q14151 SAFB2 Scaffold attachment factor B2 0 ; 92.538 0.0070061 3483700 1375.87 1455.93 1334.52 1416.77 1584.29 1509.13 1644.26 1624.8 1490.84 1689.82 FALSE TRUE 1395.136425 1614.893361 997.6039209 1325.904713 1800.09712 1776.753016 1956.249751 1486.763098 1634.041843 1345.433756 1.036941743 1.200277125 0.74147383 0.985484946 1.337930695 1.320580079 1.453991876 1.105043701 1.214509325 1 10.39385565 -6.751205592 24.65114091 1.258789132 0.988163042 0.367565159 0.157794269 182.7734938 440262.0173 0.047570901 0.060687937 1.77E-07 6.751205592 -0.27062609 GRAEGEWEDQEALDYFS(ph)DKESGK ddPTM_K562_Paclitaxel_30min_R1 2 GRAEGEWEDQEALDYFSDKESGK 23 2 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 GRAEGEWEDQEALDY(0.437)FS(0.511)DKES(0.052)GK;GRAEGEWEDQEALDY(0.43)FS(0.503)DKES(0.066)GK 66.536 0.0026824 36785000 3072.42 2545.3 6864 3907.9 2927.9 2812.1 2099.5 4286.1 2875.89 6086.6 TRUE FALSE 3115.443359 2823.204462 5131.098307 3657.264785 3326.72955 3310.786451 2497.869165 3921.969052 3152.132084 4846.147579 0.642870096 0.582566753 1.058799433 0.754674662 0.68646889 0.68317904 0.515433986 0.809296248 0.650440795 1 12.24262262 -11.68894669 2.524440366 1.047058173 0.712988488 0.278150632 0.140376794 20972481.77 16578920.55 6295728.528 0.037558735 2.05E-12 11.68894669 -0.334069685 GRAS(ph)PGGVSTSSSDGK ddPTM_K562_Paclitaxel_30min_R1 1 GRASPGGVSTSSSDGK 16 1 P54259 P54259 ATN1 Atrophin-1 1 GRAS(1)PGGVSTSSSDGK 133.71 1.10E-06 2345200 1133.3 888.95 2198.2 1672 1030.9 891.37 945.79 1463.7 965.25 1593.8 TRUE FALSE 1149.169697 986.0085672 1643.237223 1564.765404 1171.326033 1049.441954 1125.248715 1339.349549 1057.966575 1268.982685 0.905583433 0.777007109 1.294924858 1.233086489 0.923043354 0.826994699 0.886732915 1.055451398 0.833712381 1 10.30945667 -6.94743563 24.99998968 0.916715227 1.053741961 0.152445812 0.151950334 204.7894282 97398.16369 0.051191784 0.058046019 1.13E-07 6.94743563 0.137026734 GRASSHS(ph)SQTQGGGSVTK ddPTM_K562_Paclitaxel_30min_R1 1 GRASSHSSQTQGGGSVTK 18 1 P02545-6;P02545;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;Q3BDU5;P02545-2;Q5TCI8 P02545-6;Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C 1 GRAS(0.019)S(0.338)HS(0.528)S(0.115)QTQGGGSVTK 88.768 0.0021379 7553100 357.01 591.99 591.97 644.94 502.63 348.96 488.3 960.48 739.36 1057.3 TRUE FALSE 362.0092415 656.6254702 442.5198521 603.576435 571.0967156 410.8431564 580.9523759 878.8812289 810.3788315 841.8216796 0.430030789 0.780005417 0.525669346 0.716988466 0.678405807 0.488040598 0.690113346 1.04402304 0.96264904 1 9.717370854 -8.181738828 4.453803865 1.002924142 0.614962322 0.751708124 0.102459928 0.103918119 3.776957744 0.048511525 0.026679244 6.58E-09 8.181738828 -0.387961819 GREDVSNFDDEFTSEAPILT(ph)PPREPR ddPTM_K562_Paclitaxel_30min_R1 2 GREDVSNFDDEFTSEAPILTPPREPR 26 2 Q16513-4;Q16513-3;Q16513-2;Q16513;Q16513-5 Q16513-4 PKN2 Serine/threonine-protein kinase N2 1 GREDVSNFDDEFT(0.031)S(0.045)EAPILT(0.925)PPREPR;GREDVSNFDDEFTSEAPILT(0.999)PPREPR 85.397 0.00071382 555420000 3070.7 2644.4 3471.5 3246.4 2905.5 2758.7 2673.4 3085.7 3142 3492 TRUE FALSE 3113.699274 2933.124535 2595.07689 3038.190434 3301.278291 3247.916711 3180.663694 2823.550525 3443.803139 2780.328483 1.119903383 1.054956115 0.933370609 1.092745139 1.187369878 1.168177332 1.143988458 1.01554566 1.238631751 1 11.44103963 -6.515046604 24.82320441 1.130407538 1.033813512 0.197143372 0.08044552 488.4832853 1548202.217 0.022822592 0.030879198 3.05E-07 6.515046604 -0.096594026 GREETVAEDVCIDLTCDSGSQAVPS(ph)PATR ddPTM_K562_Paclitaxel_30min_R1 3 GREETVAEDVCIDLTCDSGSQAVPSPATR 29 1 A6NNK5;Q12888;Q12888-3;Q12888-2;C9JXV0 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 GREETVAEDVCIDLTCDSGSQAVPS(0.932)PAT(0.068)R;GREETVAEDVCIDLTCDSGSQAVPS(0.938)PAT(0.062)R;GREETVAEDVCIDLT(0.011)CDS(0.03)GS(0.118)QAVPS(0.76)PAT(0.081)R 154.83 3.75E-35 183892300 2614.51 2444.03 2937.74 2976.83 2568.53 2724.84 2625.07 2704.21 2670.27 3109.59 TRUE FALSE 2651.121206 2710.877461 2196.071203 2785.909448 2918.407272 3208.052115 3123.163329 2474.470481 2926.761365 2475.853851 1.070790671 1.094926285 0.886995491 1.125231785 1.178747797 1.295735657 1.261448985 0.999441255 1.182122024 1 11.27371044 -6.504761166 23.30724773 1.164231512 1.022107541 0.251584833 0.10360071 418.5124431 538391.7483 0.030128334 0.043632762 3.13E-07 6.504761166 -0.14212397 GRENYSSYSSFS(ph)SPHMKPAPVGSR ddPTM_K562_Paclitaxel_30min_R1 1 GRENYSSYSSFSSPHMKPAPVGSR 24 2 Q5BKZ1 Q5BKZ1 ZNF326 DBIRD complex subunit ZNF326 1 GRENYSS(0.001)Y(0.001)S(0.003)S(0.011)FS(0.492)S(0.492)PHMKPAPVGSR 58.373 0.0061669 16017000 888.68 856.49 1349.2 825.02 745.23 592.62 790.97 873.13 1088.5 1274 TRUE FALSE 901.1242618 950.0044747 1008.577773 772.1069099 846.7429428 697.7128362 941.0524284 798.9521566 1193.055289 1014.358101 0.888368971 0.936557291 0.994301492 0.761177842 0.834757412 0.687836806 0.927731959 0.787643098 1.176167754 1 9.986351344 -8.758103638 24.99982557 1.088083907 0.853249572 0.498113565 0.094667413 67.3266509 504613.1758 0.071666867 0.024569151 1.75E-09 8.758103638 -0.234834335 GRENYSSYSSFSSPHMKPAPVGS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 GRENYSSYSSFSSPHMKPAPVGSR 24 2 Q5BKZ1 Q5BKZ1 ZNF326 DBIRD complex subunit ZNF326 1 GRENYS(0.001)S(0.001)Y(0.001)S(0.003)S(0.016)FS(0.291)S(0.291)PHMKPAPVGS(0.396)R 45.913 0.026123 20695000 694.43 555.84 831.06 522.17 590.44 539.19 526.99 790.74 678.28 822.96 TRUE FALSE 704.1541625 616.5284909 621.2486246 488.6803533 670.8679242 634.8077759 626.9836014 723.5617014 743.4318246 655.2403003 1.074650265 0.940919676 0.948123344 0.745803262 1.023850218 0.968816747 0.956875823 1.104269229 1.13459417 1 9.355880282 -8.235444171 6.735442309 1.089756347 0.945995641 0.316523982 0.085803063 0.204889597 37.28174941 0.042764034 0.023714724 5.82E-09 8.235444171 -0.143760706 GREVS(ph)PSDVREDSNLESSQLTVQAEFDMSAIPR ddPTM_K562_Paclitaxel_30min_R1 3 GREVSPSDVREDSNLESSQLTVQAEFDMSAIPR 33 2 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 GREVS(0.22)PS(0.22)DVREDS(0.184)NLES(0.184)S(0.184)QLT(0.008)VQAEFDMSAIPR;GREVS(0.451)PS(0.451)DVREDS(0.015)NLES(0.039)S(0.039)QLT(0.005)VQAEFDMSAIPR;GREVS(0.379)PS(0.379)DVREDS(0.17)NLES(0.05)S(0.019)QLT(0.003)VQAEFDMSAIPR 66.083 7.84E-05 32760900 1783.65 1616.49 1839.57 1425.57 1514.4 1841.9 1798.52 1942.26 1980.65 2035.28 TRUE FALSE 1808.626603 1792.983845 1375.147802 1334.140321 1720.686919 2168.535103 2139.779781 1777.25289 2170.900282 1620.488819 1.116099403 1.106446292 0.848600611 0.823294987 1.061832022 1.338198128 1.320453283 1.096738755 1.339657674 1 10.66221335 -7.046675172 6.419690541 1.22929627 0.970142235 0.43057785 0.133725351 0.206024337 21.53256187 0.045222484 0.046015786 8.98E-08 7.046675172 -0.259154034 GREVSPS(ph)DVREDSNLESSQLTVQAEFDMSAIPR ddPTM_K562_Paclitaxel_30min_R1 1 GREVSPSDVREDSNLESSQLTVQAEFDMSAIPR 33 2 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 GREVS(0.099)PS(0.571)DVREDS(0.103)NLES(0.103)S(0.103)QLT(0.021)VQAEFDMSAIPR 40.112 0.020544 4672600 405.45 318.84 453.58 274.52 407.37 351.34 361.61 424.96 391.78 260.57 TRUE FALSE 411.1275509 353.6520294 339.0681192 256.9135159 462.8606908 413.6452159 430.2236098 388.8569955 429.4122195 207.465691 1.981665253 1.704628981 1.634333453 1.238342179 2.23102282 1.993800585 2.073709671 1.874319526 2.06979871 1 7.696728964 -6.775073417 24.99964593 1.933489088 1.643990737 0.078692736 0.358839025 472.435568 866264.0952 0.105810254 0.120612299 1.68E-07 6.775073417 -0.289498352 GRGFRMFT(ph)MT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 GRGFRMFTMTR 11 2 Q9HB58-7 Q9HB58-7 2 GRGFRMFT(1)MT(1)R 77.597 0.022395 13780000 2034.6 1630.2 2438.9 2214.5 1841 2003.7 1592.1 1606.6 1316.3 2003.6 TRUE FALSE 2063.090677 1808.190749 1823.169531 2072.471882 2091.775368 2359.028062 1894.192664 1470.109302 1442.736496 1595.26522 1.293258733 1.133473435 1.14286296 1.299139388 1.311239875 1.478768566 1.187384166 0.921545385 0.904386605 1 10.63958058 -8.178935541 4.228196826 0.933781999 1.270463151 0.714845507 0.094115846 0.131884297 4.324954841 0.05274973 0.028792843 6.62E-09 8.178935541 0.336681152 GRGPS(ph)PEGSSSTESSPEHPPK ddPTM_K562_Paclitaxel_30min_R1 1 GRGPSPEGSSSTESSPEHPPK 21 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 GRGPS(0.927)PEGS(0.008)S(0.027)S(0.034)T(0.003)ESSPEHPPK 73.676 0.0085228 0 1476.3 1012.8 2079 1649.3 1460.9 1176.2 983.07 1660.4 1175.5 1785 TRUE FALSE 1496.972755 1123.380929 1554.130737 1543.52128 1659.899313 1384.782555 1169.602401 1519.338656 1288.412027 1421.21602 1.053304166 0.790436438 1.093521826 1.08605677 1.167943008 0.974364583 0.82295892 1.069041324 0.906556082 1 10.47291014 -7.508979491 24.82823605 0.947288131 1.034305462 0.131075811 0.108901816 1385.017095 2474063.717 0.041026396 0.034721827 3.10E-08 7.508979491 0.087017332 GRIS(ph)NSFRRT(ph)SST(ph)ENK ddPTM_K562_Paclitaxel_30min_R1 1 GRISNSFRRTSSTENK 16 3 Q9Y2K7-5 Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 3 GRIS(0.716)NS(0.284)FRRT(0.334)S(0.334)S(0.334)T(0.997)ENK 83.37 0.015714 31729000 1770.4 1371.4 1568.1 1664.2 1582.7 1471.6 1485.8 1834.2 1326.2 1895.9 TRUE FALSE 1795.191062 1521.13409 1172.213761 1557.465661 1798.290535 1732.567598 1767.722794 1678.373261 1453.587436 1509.514539 1.189250594 1.007697541 0.776550163 1.031765922 1.191303885 1.147764763 1.171053837 1.111862932 0.962950272 1 10.55986894 -6.529410729 24.54607443 1.109479952 0.978042382 0.143628416 0.114674393 210.2520886 790084.8143 0.034937021 0.045223442 2.96E-07 6.529410729 -0.13143757 GRLS(ph)PVPVPR ddPTM_K562_Paclitaxel_30min_R1 1 GRLSPVPVPR 10 1 Q9UKM9-2;Q9UKM9;Q5QPM0;Q5QPM1;Q5QPL9 Q9UKM9-2 RALY RNA-binding protein Raly 1 GRLS(1)PVPVPR 86.288 0.017047 50960000 497.06 559.98 596.5 686.27 709.88 526.01 386.86 607.76 631.86 606.71 TRUE FALSE 504.0203736 621.1205101 445.9061976 642.2557138 806.5776744 619.290488 460.2646655 556.1269945 692.5529762 483.062169 1.043386144 1.285798289 0.923082423 1.329550843 1.669718157 1.28200991 0.952806274 1.151253462 1.43367256 1 8.916065062 -5.250020568 22.87940842 1.231003023 1.043385771 0.057809626 0.219269864 1761.168947 3528556.52 0.057263069 0.791077884 5.62E-06 5.250020568 -0.187617253 GRLT(ph)PS(ph)PDIIVLS(ph)DNEASSPR ddPTM_K562_Paclitaxel_30min_R1 3 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 3 GRLT(1)PS(1)PDIIVLS(0.765)DNEAS(0.126)S(0.109)PR;GRLT(1)PS(1)PDIIVLS(0.906)DNEAS(0.05)S(0.044)PR;GRLT(1)PS(1)PDIIVLS(0.536)DNEAS(0.25)S(0.214)PR 112.39 4.22E-05 0 2073.1 1813.21 2378.86 2496.78 2035.85 2134.37 2009.69 2216.96 1903.19 2201.53 TRUE FALSE 2102.129796 2011.1824 1778.287372 2336.647706 2313.167237 2512.870551 2391.018186 2028.61541 2085.999903 1752.856978 1.199259165 1.14737393 1.014507969 1.333050977 1.319655435 1.433585617 1.364069184 1.157319414 1.190057107 1 10.77549257 -6.273950118 24.95564337 1.277826786 1.123079707 0.1893046 0.124134014 1060.095787 2114610.317 0.035630261 0.053268831 5.32E-07 6.273950118 -0.154747079 GRLT(ph)PS(ph)PDIIVLSDNEAS(ph)S(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 4 GRLT(1)PS(1)PDIIVLS(0.127)DNEAS(0.933)S(0.94)PR 59.372 0.015486 9157400 1447.8 1357.9 1921.8 1320.2 1269.2 1348.6 1465.4 1633 1528.5 2224.7 TRUE FALSE 1468.073667 1506.160114 1436.617821 1235.528281 1442.086528 1587.755275 1743.452 1494.266457 1675.319255 1771.304919 0.828809118 0.850311032 0.811050546 0.697524332 0.814137934 0.896376032 0.98427548 0.843596402 0.945810762 1 10.79059687 -7.315451677 3.582690641 0.930909161 0.797042229 0.605544405 0.054553467 0.184953891 4.836386495 0.020616581 0.018464495 4.84E-08 7.315451677 -0.133866933 GRLT(ph)PS(ph)PDIIVLSDNEAS(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 1 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 3 GRLT(1)PS(1)PDIIVLS(0.21)DNEAS(0.419)S(0.371)PR 79.9 0.00503 5860600 731.26 897.91 1098.7 891.6 949.96 955.16 779.28 809.82 778.99 898 TRUE FALSE 741.4998961 995.9468503 821.3195965 834.4167667 1079.360635 1124.544215 927.1443119 741.0207363 853.8154701 714.9871071 1.037081493 1.392957776 1.14871945 1.167037501 1.509622515 1.572817473 1.296728714 1.036411327 1.194169044 1 9.481773417 -8.231839091 9.235730295 1.086497051 1.314229897 0.292089353 0.160933759 0.548029081 166.2957839 0.081555469 0.046397265 5.86E-09 8.231839091 0.227732846 GRLT(ph)PS(ph)PDIIVLSDNEASS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 3 GRLT(1)PS(1)PDIIVLS(0.216)DNEAS(0.243)S(0.54)PR;GRLT(1)PS(1)PDIIVLS(0.037)DNEAS(0.134)S(0.83)PR 146.36 3.13E-17 26557000 3130.2 3189.1 4621.7 3717 3527.9 3500.5 3389.8 3347.3 3658.5 4122.1 TRUE FALSE 3174.032457 3537.296723 3454.894675 3478.608257 4008.459708 4121.264526 4032.996854 3062.925972 4009.915272 3282.013757 0.967099072 1.077782418 1.052675257 1.059900571 1.221341531 1.255712142 1.228817778 0.933245927 1.221785028 1 11.68036557 -6.609952019 7.585235585 1.14984918 1.04020084 0.200833354 0.101994956 0.392224872 29.34566886 0.030761031 0.039763397 2.45E-07 6.609952019 -0.10964834 GRLT(ph)PS(ph)PDIIVLSDNEASSPR ddPTM_K562_Paclitaxel_30min_R1 2 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 2 GRLT(1)PS(1)PDIIVLSDNEASSPR;GRLT(1)PS(1)PDIIVLSDNEASSPR 97.08 0.0020272 56026000 3289.8 3682 4271.4 4246.6 3740.8 3920.8 3721 3899.5 3782.7 3938.8 TRUE FALSE 3335.86735 4084.013212 3193.032242 3974.242083 4250.360292 4616.098829 4427.040325 3568.213135 4146.045237 3136.070398 1.063709333 1.302270897 1.018163446 1.267268135 1.355314056 1.471937247 1.411652088 1.137797524 1.322051074 1 11.61474223 -6.499219011 20.92116545 1.306373912 1.145010852 0.176359702 0.145206584 154.0339093 136203.092 0.040388774 0.059276009 3.17E-07 6.499219011 -0.16136306 GRLT(ph)PSPDIIVLS(ph)DNEASSPR ddPTM_K562_Paclitaxel_30min_R1 2 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 2 GRLT(0.984)PS(0.016)PDIIVLS(0.988)DNEAS(0.007)S(0.005)PR;GRLT(0.894)PS(0.106)PDIIVLS(0.936)DNEAS(0.03)S(0.033)PR 104.65 0.00077119 30590400 2413.1 2404.9 2402 2310.1 2093.83 2458.9 2318.8 2832.9 2444.4 3069.4 TRUE FALSE 2446.890845 2667.475115 1795.585392 2161.940526 2379.045095 2894.95139 2758.780195 2592.227463 2679.195542 2443.854595 1.001242402 1.091503202 0.734734954 0.884643681 0.973480623 1.184584139 1.128864295 1.060712641 1.096299079 1 11.25494273 -7.076186895 5.816847113 1.099336764 0.926069073 0.409309792 0.095361231 0.235006811 13.78182702 0.033370233 0.033680902 8.39E-08 7.076186895 -0.173267691 GRLT(ph)PSPDIIVLSDNEAS(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 1 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 2 GRLT(0.963)PS(0.037)PDIIVLS(0.15)DNEAS(0.616)S(0.233)PR 130.21 1.22E-08 27068000 1181.6 989.43 1084.2 1182.7 1403.7 1014.6 1079.2 1142.9 794.12 1496 TRUE FALSE 1198.146046 1097.459313 810.4803008 1106.846916 1594.907705 1194.525064 1283.972566 1045.803511 870.3987742 1191.114379 1.005903435 0.921371896 0.680438684 0.929253257 1.339004661 1.002863441 1.077959085 0.87800427 0.730743235 1 10.21809624 -4.811351497 15.76896858 0.956285466 47.8639096 0.00812663 0.173319736 979.4744999 81874.74862 0.045111746 12.74120881 1.54E-05 4.811351497 46.90762413 GRLT(ph)PSPDIIVLSDNEASS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 2 GRLT(1)PSPDIIVLS(0.025)DNEAS(0.067)S(0.907)PR 172.34 3.18E-19 31366000 2406.5 2426.9 2254.4 2119.1 2282 1662.1 2250 2684 2235.6 2617.7 TRUE FALSE 2440.198425 2691.877149 1685.248838 1983.190411 2592.847035 1956.850098 2676.925754 2455.977447 2450.339369 2084.211303 1.170801838 1.291556737 0.808578687 0.951530398 1.244042305 0.938892374 1.28438309 1.178372578 1.175667441 1 11.02528583 -7.768064007 24.99378907 1.174470117 1.068723416 0.077429111 0.152188828 412.1422968 1554935.854 0.064266261 0.044446477 1.71E-08 7.768064007 -0.105746701 GRLT(ph)PSPDIIVLSDNEASSPR ddPTM_K562_Paclitaxel_30min_R1 2 GRLTPSPDIIVLSDNEASSPR 21 1 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 GRLT(0.983)PS(0.017)PDIIVLSDNEASSPR;GRLT(0.989)PS(0.011)PDIIVLSDNEASSPR 118.23 8.75E-05 39327000 2718.4 2574.3 2618.3 3036.1 2737.2 2569.6 2902.5 3097.2 2543.4 3333.3 TRUE FALSE 2756.465987 2855.37078 1957.277782 2841.378135 3110.052981 3025.282481 3453.234223 2834.073528 2787.704934 2653.97163 1.038619236 1.075885947 0.737490092 1.070613605 1.171848616 1.139907619 1.301157173 1.067861275 1.050389877 1 11.37393723 -6.511825297 24.26347312 1.133858297 0.953331284 0.311631037 0.112955965 413.4108834 907480.8529 0.032951073 0.045688725 3.08E-07 6.511825297 -0.180527013 GRNDS(ph)GEENVPLDLTR ddPTM_K562_Paclitaxel_30min_R1 2 GRNDSGEENVPLDLTR 16 1 Q6R327-3;Q6R327;Q6R327-4 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 GRNDS(1)GEENVPLDLTR;GRNDS(1)GEENVPLDLTR 111.4 0.00072155 19044600 1555.02 2084.36 2209.4 2110.32 1900.6 1884.78 2202 2131.9 1414.52 2365.5 TRUE FALSE 1576.795078 2311.937474 1651.609644 1974.973521 2159.493897 2219.019269 2619.818005 1950.781788 1550.390966 1883.409802 0.837202332 1.227527579 0.876925268 1.04861593 1.146587373 1.178192482 1.39099733 1.035771284 0.823183019 1 10.87913123 -5.238576632 23.36975539 1.089390318 0.837201656 0.174469973 0.158032256 4714.01342 4818373.17 0.040918245 1.950737539 5.77E-06 5.238576632 -0.252188663 GRNS(ph)ATSADEQPHIGNYR ddPTM_K562_Paclitaxel_30min_R1 2 GRNSATSADEQPHIGNYR 18 1 Q7KZI7-10;Q7KZI7-13;Q7KZI7-7;Q7KZI7-2;Q7KZI7-15;Q7KZI7-5;Q7KZI7-4;Q7KZI7-16;Q7KZI7-9;Q7KZI7;Q7KZI7-11;E9PC69;E7ETY4;Q7KZI7-8;Q7KZI7-14;Q7KZI7-6;Q7KZI7-3;Q7KZI7-12;F5H6N2;F5H4F6;F5H4J8 Q7KZI7-10 MARK2 Serine/threonine-protein kinase MARK2 1 GRNS(1)ATSADEQPHIGNYR;GRNS(0.927)AT(0.058)S(0.015)ADEQPHIGNYR 169.77 2.00E-10 90589000 1794.41 1643.53 2168.2 1602.53 1501.76 1509.8 1729.56 2077.7 2311.6 2056.48 TRUE FALSE 1819.537276 1822.976163 1620.811094 1499.750898 1706.325137 1777.541831 2057.734981 1901.186416 2533.639509 1637.368247 1.111257214 1.113357467 0.989887948 0.915952109 1.042114466 1.085609077 1.256733166 1.161123296 1.547385271 1 10.67716311 -7.681103067 2.595426992 1.260515442 1.030342434 0.333513016 0.1374162 0.30582967 4.192131325 0.059471805 0.04208229 2.08E-08 7.681103067 -0.230173008 GRRPEHGGPPELFYDETEAR ddPTM_K562_Paclitaxel_30min_R1 1 GRRPEHGGPPELFYDETEAR 20 2 F8WD87;F8WD67;E9PCQ7;O43709-2;O43709;O43709-3 F8WD87 WBSCR22 Probable 18S rRNA (guanine-N(7))-methyltransferase 0 49.924 0.022851 9740200 931.63 982.96 1285.7 1232.1 972.62 962.41 1130 1321.2 1110.4 1287.1 FALSE TRUE 944.6756943 1090.282897 961.1091337 1153.078621 1105.107311 1133.079901 1344.411601 1208.955813 1217.058881 1024.788313 0.921825202 1.063910354 0.937861138 1.125187129 1.078376184 1.105672153 1.311892011 1.179712724 1.18761979 1 10.00111021 -6.629714942 1.07198505 1.177560458 0.973490737 0.424287865 0.086053897 0.469119483 1.12804203 0.035336937 0.062550301 2.35E-07 6.629714942 -0.204069721 GRS(ph)GSAAQAEGLCK ddPTM_K562_Paclitaxel_30min_R1 2 GRSGSAAQAEGLCK 14 1 F8WF93;H7BZZ2;F8WE30;H7C0X4;Q92685 F8WF93 ALG3 "Dol-P-Man:Man(5)GlcNAc(2)-PP-Dol alpha-1,3-mannosyltransferase" 1 GRS(0.983)GS(0.017)AAQAEGLCK;GRS(0.996)GS(0.004)AAQAEGLCK 106.14 0.0072277 12899400 4966.6 3822.1 6299.9 4025 3030.1 3114.6 3491.6 4556 4196.4 5536.4 TRUE FALSE 5036.147723 4239.409804 4709.412329 3766.854515 3442.85092 3666.930579 4154.112873 4168.939362 4599.48297 4408.078641 1.14248137 0.961736427 1.068359417 0.854534327 0.7810321 0.831865962 0.942386289 0.94574977 1.04342126 1 12.10593425 -5.326026056 1.167676828 0.911659847 1.209030359 0.351771402 0.085815547 1.675971997 2.098798428 0.028722574 0.592990141 4.72E-06 5.326026056 0.297370512 GRS(ph)IDQDYER ddPTM_K562_Paclitaxel_30min_R1 3 GRSIDQDYER 10 1 Q9UDY2-7;Q9UDY2-4;A0A3B3IU51;A0A1B0GTW1;A0A3B3ITE1;A0A2R8YDH4;Q9UDY2-2;Q9UDY2-6;Q9UDY2-3;Q9UDY2;Q9UDY2-5;A0A3B3ISF1;A0A3B3ISZ5;A0A3B3IRI3;A0A3B3IRV6 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 GRS(1)IDQDYER;GRS(1)IDQDYER;GRS(1)IDQDYER 137.81 0.0031654 289898000 6205.6 5568.03 7054 6462 5457.21 5542.2 5267.17 6901 5287.1 6067.3 TRUE FALSE 6292.497546 6175.966345 5273.130457 6047.556243 6200.574393 6525.031354 6266.588011 6314.716975 5794.949578 4830.78093 1.302583917 1.278461275 1.091568948 1.25187963 1.283555285 1.35071978 1.297220491 1.307183469 1.199588568 1 12.23804071 -9.100040059 4.624621407 1.000028083 1.267688233 0.611207474 0.06498124 0.434145707 18.6458461 0.068478169 0.017885936 7.94E-10 9.100040059 0.26766015 GRS(ph)PDELPSAGGDGGK ddPTM_K562_Paclitaxel_30min_R1 1 GRSPDELPSAGGDGGK 16 1 B4E2I7;A0A2R8Y5N1;A0A140T8Z0;A0A0G2JH68;O60610-2;O60610-3;O60610 B4E2I7 DIAPH1 Protein diaphanous homolog 1 1 GRS(1)PDELPSAGGDGGK 138.91 1.88E-08 5568300 1963.6 1800.3 2913.9 2088.3 1783 1730.3 1372.3 2209.3 1813 2396.7 TRUE FALSE 1991.096458 1996.862842 2178.249906 1954.365785 2025.874786 2037.14441 1632.686761 2021.606175 1987.146751 1908.251224 1.043414218 1.046436034 1.141490113 1.024165875 1.061639453 1.067545187 0.855593195 1.05940253 1.041344413 1 10.8980354 GRS(ph)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK ddPTM_K562_Paclitaxel_30min_R1 5 GRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFK 32 1 B7Z4B8;M0R0K8;M0QYI8;M0QYZ0;M0R3F1;A0A0A0MRA5;Q9BUJ2-3;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2 B7Z4B8 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 1 GRS(0.772)PQPPAEEDEDDFDDT(0.228)LVAIDTYNCDLHFK;GRS(0.996)PQPPAEEDEDDFDDT(0.004)LVAIDTYNCDLHFK;GRS(0.982)PQPPAEEDEDDFDDT(0.018)LVAIDTYNCDLHFK;GRS(1)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK;GRS(0.998)PQPPAEEDEDDFDDT(0.002)LVAIDTYNCDLHFK 151.91 1.48E-38 639922000 8143.98 8740.06 12269 9960.99 7235.49 7736.2 6980.07 10037.4 8969.33 12124 TRUE FALSE 8258.020846 9694.329308 9171.539209 9322.136685 8221.086236 9108.106448 8304.501844 9184.660219 9830.874223 9653.122145 0.855476676 1.004268791 0.950111173 0.965712082 0.851650493 0.943539956 0.860291802 0.951470424 1.018413947 1 13.23677992 -8.62081973 4.597732972 1.007648199 0.922325458 0.351575318 0.048375122 0.247725026 8.859271048 0.035713996 0.012414532 2.39E-09 8.62081973 -0.085322741 GRS(ph)PSQYHDFAEK ddPTM_K562_Paclitaxel_30min_R1 2 GRSPSQYHDFAEK 13 1 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 GRS(0.998)PS(0.002)QYHDFAEK;GRS(0.932)PS(0.068)QYHDFAEK 106.54 0.0039309 55420000 4696.4 3719.4 6608.6 4769 3719.3 3268.8 3497 4878.7 4392.3 5632 TRUE FALSE 4762.16409 4125.49667 4940.177196 4463.137685 4225.931628 3848.475784 4160.537494 4464.223983 4814.20004 4484.195309 1.061988554 0.920008248 1.101686447 0.995304035 0.942405791 0.85823108 0.927822543 0.995546286 1.073592854 1 12.1306334 -4.374775164 4.366749301 0.977442258 46.625245 0.113925893 0.068619991 9866.17768 277.920983 0.018840385 4501794.574 4.22E-05 4.374775164 45.64780275 GRS(ph)S(ph)ESSCGVDGDYEDAELNPR ddPTM_K562_Paclitaxel_30min_R1 1 GRSSESSCGVDGDYEDAELNPR 22 1 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 2 GRS(0.598)S(0.598)ES(0.493)S(0.311)CGVDGDYEDAELNPR 82.189 0.0012788 8896500 479.16 601.4 1012.7 869.68 907.04 605.26 354.47 817.24 574.54 831.11 TRUE FALSE 485.8697183 667.0628858 757.0313601 813.9026173 1030.594204 712.5943627 421.728832 747.8103609 629.7271341 661.7293258 0.734242385 1.008060033 1.144019663 1.229963046 1.557425618 1.076866832 0.637313197 1.130084963 0.951638547 1 9.370097407 -7.534724729 24.96500703 0.928669637 1.151873396 0.157529817 0.222890674 422.4543453 890299.4133 0.090471505 0.07013049 2.92E-08 7.534724729 0.223203759 GRS(ph)SDAHSSWYNGR ddPTM_K562_Paclitaxel_30min_R1 1 GRSSDAHSSWYNGR 14 1 Q9Y388 Q9Y388 RBMX2 "RNA-binding motif protein, X-linked 2" 1 GRS(0.5)S(0.5)DAHSSWYNGR 92.427 0.0089446 62878000 472.56 334.94 697.77 655.29 423.5 389.66 320.76 560.79 474.25 565.76 TRUE FALSE 479.177298 371.5098819 521.6093336 613.2626324 481.1878699 458.7607299 381.6225355 513.1473892 519.8038315 450.4578014 1.063756242 0.824738479 1.157953824 1.361420827 1.068219639 1.0184322 0.847188203 1.139168614 1.153945674 1 8.815248152 -5.775226518 24.99222319 1.095479159 0.944247306 0.160312536 0.136368599 390.073226 707096.0258 0.038435156 0.080678483 1.68E-06 5.775226518 -0.151231853 GRS(ph)SESSCGVDGDYEDAELNPR ddPTM_K562_Paclitaxel_30min_R1 2 GRSSESSCGVDGDYEDAELNPR 22 1 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 GRS(0.498)S(0.498)ES(0.003)S(0.001)CGVDGDYEDAELNPR;GRS(0.413)S(0.413)ES(0.144)S(0.031)CGVDGDYEDAELNPR 160.02 3.85E-18 39946000 1125.34 943.27 1333.46 1084.61 933.37 1051.55 957.87 1106.41 1090 1195.96 TRUE FALSE 1141.098232 1046.259409 996.811531 1015.047969 1060.510796 1238.027628 1139.620832 1012.413565 1194.69937 952.2226955 1.198352273 1.098754959 1.046826058 1.065977501 1.113721403 1.300145054 1.196800746 1.063210916 1.254642822 1 9.895155205 -4.464684766 3.792971204 1.131987173 8.376369646 0.049609962 0.090978071 2075.249387 243.5510455 0.0237769 127942.8642 3.43E-05 4.464684766 7.244382473 GRS(ph)YDSSMESR ddPTM_K562_Paclitaxel_30min_R1 2 GRSYDSSMESR 11 1 Q9HCG8;B7WP74 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 1 GRS(0.998)YDS(0.002)SMESR;GRS(0.983)YDS(0.01)S(0.007)MESR 149.82 0.0012365 27607000 4069.5 4338.5 4631.2 4492.1 4131.8 3686.4 4031.2 4323.5 4026 4690.6 TRUE FALSE 4126.485555 4812.192102 3461.996282 4203.996812 4694.621112 4340.13128 4796.099156 3956.191689 4412.715289 3734.653145 1.104918019 1.288524507 0.926992721 1.125672626 1.257043407 1.162124329 1.28421542 1.05931971 1.181559603 1 11.86675854 -10.40979673 1.112642192 0.997361285 1.155678956 0.162383055 0.105023214 76.63156862 55.61779835 1.06250117 0.031014272 3.89E-11 10.40979673 0.15831767 GRSECDSS(ph)PEPK ddPTM_K562_Paclitaxel_30min_R1 2 GRSECDSSPEPK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 GRSECDS(0.001)S(0.999)PEPK;GRSECDS(0.024)S(0.976)PEPK 118.08 0.0023366 20273000 8197.2 7476.4 12983.9 9448.4 7247.8 7285 6573.6 8900.3 8125 9774.3 TRUE FALSE 8311.986091 8292.698636 9705.953862 8842.421913 8235.073066 8576.892464 7820.906284 8144.163961 8905.442553 7782.292295 1.068063981 1.065585604 1.247184441 1.13622331 1.0581809 1.102103614 1.004961776 1.046499367 1.144321264 1 12.92597945 -6.761524821 24.99873696 1.061088269 1.133138728 0.236972188 0.061259551 3.544995443 1037173.21 0.019183219 0.023190304 1.73E-07 6.761524821 0.072050459 GRSS(ph)ESSCGVDGDYEDAELNPR ddPTM_K562_Paclitaxel_30min_R1 1 GRSSESSCGVDGDYEDAELNPR 22 1 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 GRS(0.239)S(0.348)ES(0.348)S(0.066)CGVDGDYEDAELNPR 79.293 0.0011759 39302000 398.88 445.75 520.15 512.73 449.34 358.84 371.97 491.38 340.71 382.93 TRUE FALSE 404.4655507 494.4184924 388.8316994 479.8457927 510.5477154 422.4752356 442.5493657 449.6342019 373.4367178 304.8886558 1.326600852 1.621636237 1.275323604 1.573839445 1.674538248 1.385670564 1.45151142 1.474748874 1.224829821 1 8.252138662 -8.969998081 2.421635197 1.000564776 1.480220835 0.619192412 0.119463307 0.172423401 2.306142267 0.111438149 0.030546252 1.07E-09 8.969998081 0.479656059 GRT(ph)SSTNEDEDLNPEQK ddPTM_K562_Paclitaxel_30min_R1 1 GRTSSTNEDEDLNPEQK 17 1 Q99081;Q99081-3;B4DGI9;F5GY10;Q99081-4;Q99081-2;B4DZP2 Q99081 TCF12 Transcription factor 12 1 GRT(0.25)S(0.25)S(0.25)T(0.25)NEDEDLNPEQK 116.69 0.002185 28918000 2381.4 2691.3 4324.4 2875.4 2730.6 2424.2 2227.9 3580.4 2598.2 4288.6 TRUE FALSE 2414.746947 2985.145235 3232.651736 2690.984714 3102.553949 2854.097833 2650.632395 3276.222672 2847.768719 3414.580966 0.707186906 0.87423472 0.946719896 0.788086369 0.908619236 0.835855955 0.77626872 0.959480154 0.8340024 1 11.73749283 -15 0.174366391 1.588747623 0.819377159 0.300992328 0.07302243 176.7637831 1.682377973 35.97013873 0.244210938 1.00E-15 15 -0.769370464 GS(ph)DDELFLGGSNQDSVQGLGR ddPTM_K562_Paclitaxel_30min_R1 3 GSDDELFLGGSNQDSVQGLGR 21 0 Q96JB3-2;Q96JB3 Q96JB3-2 HIC2 Hypermethylated in cancer 2 protein 1 GS(1)DDELFLGGSNQDSVQGLGR;GS(1)DDELFLGGSNQDSVQGLGR;GS(1)DDELFLGGSNQDSVQGLGR 207.76 1.62E-30 155377000 1490.93 1212.52 2014.96 2116.99 1761.28 1435.24 1618.71 2279.78 979.78 2016.21 TRUE FALSE 1511.80762 1344.907034 1506.258427 1981.215737 2001.196155 1689.759662 1925.851772 2086.098459 1073.892247 1605.305295 0.941757075 0.837788948 0.938300292 1.234167571 1.246614062 1.052609536 1.199679449 1.299502634 0.668964495 1 10.64863198 -6.103904143 5.875146286 1.12033241 0.889323429 0.208274549 0.171962541 0.306816855 14.42486331 0.045659014 0.080769512 7.87E-07 6.103904143 -0.231008982 GS(ph)DSSQALPGQQGTSPPAR ddPTM_K562_Paclitaxel_30min_R1 1 GSDSSQALPGQQGTSPPAR 19 0 H7BZ55 H7BZ55 Putative ciliary rootlet coiled-coil protein-like 3 protein 1 GS(0.333)DS(0.333)S(0.333)QALPGQQGTSPPAR 62.203 0.025208 22586000 1044.1 751.39 1359.9 1056.5 881.27 930.19 899.65 1042.4 1054.8 1299.2 TRUE FALSE 1058.720621 833.4293012 1016.576426 988.7408187 1001.313894 1095.146136 1070.353891 953.8416135 1156.118253 1034.422327 1.023489724 0.805695391 0.982747955 0.955838629 0.967993312 1.058703111 1.034735875 0.92210076 1.117646268 1 10.0146096 -6.724248885 1.447108634 1.021453932 0.923694284 0.236910808 0.070114287 0.560578035 2.443974313 0.0251777 0.036080582 1.89E-07 6.724248885 -0.097759648 GS(ph)DTAYRVS(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 GSDTAYRVSK 10 1 C9JMN2;A0A2R8Y4M5;A0A2R8Y4I5;A0A2R8Y5N4;A0A2R8YDU3;P12107-4;P12107-3;P12107;P12107-2 C9JMN2 COL11A1 Collagen alpha-1(XI) chain 2 GS(0.961)DT(0.039)AY(0.314)RVS(0.686)K 72.243 0.024654 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 GS(ph)EDSPPKHAGNNESHSSR ddPTM_K562_Paclitaxel_30min_R1 1 GSEDSPPKHAGNNESHSSR 19 1 P48651;P48651-2 P48651 PTDSS1 Phosphatidylserine synthase 1 1 GS(0.798)EDS(0.202)PPKHAGNNESHSSR 66.068 0.015122 14347000 2205.9 1648 3857.9 2397.9 1659.9 1887.7 1839.5 2309.9 1884.1 3133.9 TRUE FALSE 2236.789406 1827.934213 2883.925431 2244.109427 1886.006482 2222.45709 2188.535522 2113.659577 2065.076223 2495.20946 0.896433523 0.732577462 1.155784906 0.899367152 0.755850967 0.89068959 0.877094912 0.847087033 0.827616381 1 11.28494521 -4.898098521 20.57675036 0.882737981 2.610444819 0 0.114732072 18710629.02 26508884.22 0.028461054 1530036781 1.26E-05 4.898098521 1.727706837 GS(ph)FPT(ph)S(ph)RRNS(ph)LQR ddPTM_K562_Paclitaxel_30min_R1 1 GSFPTSRRNSLQR 13 2 Q96J92 Q96J92 WNK4 Serine/threonine-protein kinase WNK4 4 GS(1)FPT(1)S(1)RRNS(1)LQR 56.514 0.027286 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 GS(ph)GGGGGGGGQGSTNYGK ddPTM_K562_Paclitaxel_30min_R1 2 GSGGGGGGGGQGSTNYGK 18 0 Q99729-3;Q99729-4 Q99729-3 HNRNPAB Heterogeneous nuclear ribonucleoprotein A/B 1 GS(1)GGGGGGGGQGSTNYGK;GS(1)GGGGGGGGQGSTNYGK 272.64 1.46E-114 31504000 5953.1 5590.9 9153.3 6837.5 5706.1 5270.3 5078.4 6385.8 4521.1 7848.2 TRUE FALSE 6036.461767 6201.333369 6842.436208 6398.973354 6483.367425 6204.913706 6041.999889 5843.286431 4955.371856 6248.732532 0.966029789 0.992414596 1.095011856 1.024043407 1.037549198 0.992987566 0.966916068 0.935115466 0.793020317 1 12.60934787 -8.035841359 1.75468257 0.894765334 1.023508588 0.425720092 0.056984122 0.330416541 1.974575549 0.036267319 0.017551168 9.21E-09 8.035841359 0.128743254 GS(ph)KSPDLLMYQGPPDTAEIIK ddPTM_K562_Paclitaxel_30min_R1 2 GSKSPDLLMYQGPPDTAEIIK 21 1 P82909 P82909 MRPS36 "28S ribosomal protein S36, mitochondrial" 1 GS(0.622)KS(0.377)PDLLMY(0.001)QGPPDTAEIIK;GS(0.594)KS(0.406)PDLLMYQGPPDTAEIIK 129.04 4.12E-08 21563000 3609.4 2119.73 5831.8 3168.4 2150.5 2270.96 2358.27 3338.9 3216.9 4542.6 TRUE FALSE 3659.942736 2351.16929 4359.489963 2965.193005 2443.434508 2673.68287 2805.739422 3055.239604 3525.897618 3616.815627 1.011924055 0.650066117 1.205339286 0.819835267 0.675576187 0.739236706 0.775748534 0.844731919 0.974862416 1 11.82050434 -6.473178545 24.99996253 0.812981048 0.939769067 0.102404654 0.15733914 811.0322028 407960.8403 0.043596922 0.06466359 3.36E-07 6.473178545 0.126788019 GS(ph)NRSSLMDTADGVPVSSR ddPTM_K562_Paclitaxel_30min_R1 1 GSNRSSLMDTADGVPVSSR 19 1 Q9P265 Q9P265 DIP2B Disco-interacting protein 2 homolog B 1 GS(0.926)NRS(0.006)S(0.067)LMDT(0.001)ADGVPVSSR 167.97 6.52E-12 10554000 1075.4 985.88 1317.8 1140.9 1329.6 1161.7 1455.7 1533 1748.4 1920.4 TRUE FALSE 1090.458918 1093.521712 985.1050917 1067.72778 1510.71403 1367.711184 1731.911476 1402.762081 1916.341632 1529.021426 0.713174387 0.715177495 0.644271607 0.698307926 0.988026724 0.894500993 1.132692745 0.917424738 1.253312478 1 10.57839291 -6.928018813 1.483597556 1.055662713 0.679644646 0.732140236 0.099823394 0.196576716 0.893568367 0.037417697 0.044409895 1.18E-07 6.928018813 -0.376018067 GS(ph)NSGMDSNIDLTIVEDEEEESVALEQAQK ddPTM_K562_Paclitaxel_30min_R1 1 GSNSGMDSNIDLTIVEDEEEESVALEQAQK 30 0 O95810 O95810 SDPR Serum deprivation-response protein 1 GS(0.461)NS(0.461)GMDS(0.076)NIDLT(0.002)IVEDEEEESVALEQAQK 74.328 6.38E-05 3182500 751.01 776.64 1538.4 1128.9 748.54 570.95 631.18 1101.9 811.72 1257.6 TRUE FALSE 761.5264571 861.4361816 1150.011893 1056.497407 850.5038209 672.199966 750.94311 1008.286717 889.6893329 1001.30043 0.760537432 0.860317399 1.148518326 1.055125291 0.849399237 0.671326952 0.74996783 1.006977214 0.888533857 1 9.967659189 -5.517417652 24.89140281 0.915039265 0.785482347 0.115138515 0.13493893 511.9981397 2333636.401 0.038618137 0.109648834 3.04E-06 5.517417652 -0.129556918 GS(ph)PETNHLIR ddPTM_K562_Paclitaxel_30min_R1 1 GSPETNHLIR 10 0 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 1 GS(1)PETNHLIR 140.45 0.00067504 8742500 885.99 1113.7 1154.9 1165.1 993.61 845.97 946.04 1264.6 711.97 1341.9 TRUE FALSE 898.3965935 1235.297532 863.3312114 1090.375701 1128.956504 995.9909015 1125.546151 1157.164337 780.3578997 1068.420043 0.840864601 1.156190901 0.808044754 1.020549649 1.056659795 0.932209113 1.053467836 1.08306124 0.730384931 1 10.06126323 -8.748142808 24.99912888 0.865192354 0.996008846 0.158356922 0.118589877 340.2417861 639702.5756 0.075204431 0.028058448 1.79E-09 8.748142808 0.130816492 GS(ph)PHY(ph)FSPFRPY ddPTM_K562_Paclitaxel_30min_R1 1 GSPHYFSPFRPY 12 1 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 2 GS(1)PHY(0.565)FS(0.435)PFRPY 72.681 0.030266 0 367.03 319.61 608.73 334.07 398.46 390.37 431.6 467.36 337.09 382.21 TRUE FALSE 372.1695524 354.5061007 455.0485828 312.6442454 452.736998 459.5966384 513.4938469 427.6548508 369.4690007 304.3153922 1.222973145 1.164929904 1.495318983 1.027369149 1.487722966 1.510264187 1.687373889 1.405301414 1.214098958 1 8.249423497 -5.743344673 24.79725582 1.378585017 1.193951388 0.075814373 0.20841331 510.3091081 699323.1564 0.053433045 0.140726915 1.81E-06 5.743344673 -0.184633629 GS(ph)PHYFS(ph)PFRPY ddPTM_K562_Paclitaxel_30min_R1 4 GSPHYFSPFRPY 12 1 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 2 GS(1)PHY(0.121)FS(0.878)PFRPY(0.001);GS(1)PHY(0.095)FS(0.905)PFRPY;GS(1)PHY(0.329)FS(0.671)PFRPY;GS(1)PHY(0.096)FS(0.904)PFRPY 91.592 0.017208 935000000 5546.26 5959.76 6911.91 6319.11 6477.8 5792.24 6356.95 6810.74 4242.25 7310.87 TRUE FALSE 5623.924752 6610.466751 5166.912835 5913.830568 7360.18603 6819.412437 7563.148077 6232.125126 4649.737067 5820.910681 0.966158916 1.135641331 0.887646816 1.015963118 1.264438923 1.171537034 1.299306671 1.070644349 0.798798903 1 12.50702916 -5.242098328 22.11627755 1.082545879 0.966158391 0.038803705 0.148558273 3155.345384 3607818.44 0.039048165 1.128425607 5.73E-06 5.242098328 -0.116387488 GS(ph)PHYFSPFRPY ddPTM_K562_Paclitaxel_30min_R1 6 GSPHYFSPFRPY 12 1 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 1 GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY;GS(1)PHYFSPFRPY 118.24 0.0023019 67142700 4412.51 5310.95 4690.57 5106.25 3888.74 4278.13 4376.74 4619.73 3834.59 5452.59 TRUE FALSE 4474.298754 5890.817481 3506.377591 4778.75798 4418.452225 5036.796288 5207.203567 4227.255101 4202.919503 4341.349165 1.030624026 1.356909398 0.807670026 1.10075412 1.017760161 1.160191474 1.199443622 0.973719215 0.968113677 1 12.08392774 -7.870447596 0.013741172 8.67E-08 2.117267827 0.042762448 0.140111084 2754.003648 25.5052706 1927.690485 1996.87299 1.35E-08 7.870447596 2.11726774 GS(ph)PLLGDHAVR ddPTM_K562_Paclitaxel_30min_R1 1 GSPLLGDHAVR 11 0 Q9C073;D6RFX7;D6RJ87 Q9C073 FAM117A Protein FAM117A 1 GS(1)PLLGDHAVR 107.53 2.86E-05 0 1349.4 1233.5 1770.1 1621.1 1451.1 1144.1 1262.5 1384.5 1033 1838.1 TRUE FALSE 1368.295763 1368.177701 1323.216363 1517.129902 1648.764387 1346.990071 1502.052784 1266.878083 1132.224266 1463.494211 0.934951265 0.934870593 0.904148682 1.036649062 1.126594403 0.920393166 1.026346926 0.865652951 0.773644513 1 10.51520132 -11.09498209 4.864153461 1.000001882 0.952482661 0.025476084 0.092930478 2.02E-06 3.75E-07 0.095592323 0.023183625 8.04E-12 11.09498209 -0.047519221 GS(ph)PTGGAQLLK ddPTM_K562_Paclitaxel_30min_R1 2 GSPTGGAQLLK 11 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 GS(1)PTGGAQLLK;GS(0.979)PT(0.021)GGAQLLK 145.81 0.0003207 75052000 3781.3 4067.5 5963.3 4424.9 3609.6 3491.4 3745.3 5253.7 2845.1 6137.8 TRUE FALSE 3834.249866 4511.603405 4457.791162 4141.106719 4101.288631 4110.550768 4455.951123 4807.365392 3118.384567 4886.912991 0.784595485 0.923201091 0.912189591 0.847387037 0.839239135 0.841134429 0.911813067 0.983722322 0.638109288 1 12.2547077 -7.744799967 24.76160091 0.88205472 0.862057155 0.0145376 0.099029346 1767.89962 2630861.766 0.036549969 0.02822653 1.80E-08 7.744799967 -0.019997564 GS(ph)PVFLPR ddPTM_K562_Paclitaxel_30min_R1 2 GSPVFLPR 8 0 J3QSD7;Q9NYV4-3;Q9NYV4-2;Q9NYV4 J3QSD7 CDK12 Cyclin-dependent kinase 12 1 GS(1)PVFLPR;GS(1)PVFLPR 89.886 0.015762 33273000 5942.6 5755.2 5820.5 5957.3 5180.3 5520 5570 6009.5 5893.8 6584.5 TRUE FALSE 6025.814734 6383.572199 4351.042788 5575.225442 5885.944563 6498.894495 6626.878423 5498.955465 6459.925824 5242.575286 1.149399752 1.217640539 0.829943787 1.06345167 1.122720084 1.2396378 1.264050216 1.048903481 1.232204684 1 12.35605996 -6.915454021 4.156555569 1.168006524 1.059957489 0.108551701 0.12118513 0.455659455 14.90609326 0.039567503 0.045070231 1.21E-07 6.915454021 -0.108049035 GS(ph)RGSQIDSHSSNSNYHDSWETR ddPTM_K562_Paclitaxel_30min_R1 1 GSRGSQIDSHSSNSNYHDSWETR 23 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 GS(0.475)RGS(0.475)QIDS(0.04)HS(0.004)S(0.005)NSNYHDSWETR 80.67 0.00041642 10459000 299.49 248.62 379.31 286 260.46 268.23 336.34 353.67 221.01 358.39 TRUE FALSE 303.683784 275.7651724 283.5484993 267.6572401 295.9390616 315.7968244 400.1587592 323.623526 242.238998 285.3499213 1.064250457 0.966410543 0.993686972 0.937996544 1.037109316 1.106700233 1.402344032 1.134128667 0.848919099 1 8.156588355 -7.152188413 3.613013281 1.125712784 0.989479205 0.109810169 0.133576769 0.458242852 10.95318146 0.048181709 0.048121025 7.04E-08 7.152188413 -0.13623358 GS(ph)SPGIQDTLEAEDGAFETDEAPEDR ddPTM_K562_Paclitaxel_30min_R1 1 GSSPGIQDTLEAEDGAFETDEAPEDR 26 0 Q9UNX4 Q9UNX4 WDR3 WD repeat-containing protein 3 1 GS(0.5)S(0.5)PGIQDTLEAEDGAFETDEAPEDR 246.41 1.98E-88 42428000 1086.5 999.72 1247.5 937.01 975.75 1039.4 999.55 1144.1 970.5 1505.3 TRUE FALSE 1101.714352 1108.87281 932.5531961 876.9143725 1108.66367 1223.722996 1189.209394 1046.901564 1063.720861 1198.519034 0.91922975 0.925202503 0.778087932 0.731664953 0.925028004 1.021029255 0.992232381 0.873495985 0.887529385 1 10.22703711 -6.979491438 24.64279681 0.95192483 0.838908629 0.387609847 0.069359699 241.6037035 290305.9077 0.023786794 0.026968619 1.05E-07 6.979491438 -0.113016201 GS(ph)SPLGPAGLGAEEPAAGPQLPSWLQPER ddPTM_K562_Paclitaxel_30min_R1 1 GSSPLGPAGLGAEEPAAGPQLPSWLQPER 29 0 H0YKL4;O43482 H0YKL4 OIP5 Protein yippee-like;Protein Mis18-beta 1 GS(0.5)S(0.5)PLGPAGLGAEEPAAGPQLPSWLQPER 156.58 3.44E-35 74633000 1283.9 1364.6 1466.1 1533.7 1270.1 1428.1 1591.8 1735.5 1022.5 2087.1 TRUE FALSE 1301.878561 1513.591643 1095.964923 1435.335347 1443.109123 1681.353483 1893.83574 1588.058442 1120.715694 1661.747874 0.783439282 0.910843135 0.659525395 0.863750373 0.868428445 1.011798185 1.139664909 0.955655468 0.674419815 1 10.69848579 -6.896283504 2.501040592 0.963004823 0.797979406 0.248295702 0.124442166 0.419235246 5.332607801 0.044084483 0.051306838 1.27E-07 6.896283504 -0.165025417 GS(ph)VHSLDAGLLLPSGDPFSK ddPTM_K562_Paclitaxel_30min_R1 2 GSVHSLDAGLLLPSGDPFSK 20 0 I3L456;Q15276-2;Q15276 I3L456 RABEP1 Rab GTPase-binding effector protein 1 1 GS(0.738)VHS(0.262)LDAGLLLPSGDPFSK;GS(0.563)VHS(0.437)LDAGLLLPSGDPFSK 120.33 1.76E-05 22930000 10037.3 8979 16380.8 12849.1 10080.9 8801.1 8912 11961 7110.8 13662.9 TRUE FALSE 10177.85317 9959.357585 12245.26444 12025.01624 11454.08925 10361.85151 10603.00548 10944.83839 7793.824112 10878.39348 0.935602595 0.915517314 1.125650076 1.105403685 1.052921028 0.952516705 0.974684865 1.006107971 0.716449918 1 13.40917789 -8.631509214 13.32843598 0.858312117 1.011415265 0.301772435 0.091416168 0.668526916 78.24921171 0.062508333 0.023611216 2.34E-09 8.631509214 0.153103149 GS(ph)VSDEEMMELR ddPTM_K562_Paclitaxel_30min_R1 1 GSVSDEEMMELR 12 0 Q5TBN5;Q5TBN3;P13796 Q5TBN5 LCP1 Plastin-2 1 GS(0.765)VS(0.235)DEEMMELR 178.84 0.00053473 10793000 790.79 916.1 885.1 1047.9 767.45 715.66 841.63 993.4 505.89 1303.4 TRUE FALSE 801.8634998 1016.122896 661.6455582 980.6923842 871.989683 842.5722526 1001.324899 909.0044694 554.4829949 1037.766365 0.772682106 0.97914418 0.637566972 0.945003054 0.840256259 0.811909387 0.964884711 0.875924004 0.534304265 1 10.01926597 -11.02289532 4.021361686 1.000019708 0.827638629 0.136396416 0.135460482 53921328.42 107726312 14970.76509 0.032297345 9.49E-12 11.02289532 -0.172381079 GS(ph)YGSDAEEEEYRQQLSEHSK ddPTM_K562_Paclitaxel_30min_R1 1 GSYGSDAEEEEYRQQLSEHSK 21 1 Q9UDY2-7;Q9UDY2-4;A0A3B3IU51;A0A1B0GTW1;A0A3B3ITE1;A0A2R8YDH4;Q9UDY2-2;Q9UDY2-6;Q9UDY2-3;Q9UDY2;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 GS(0.866)Y(0.047)GS(0.086)DAEEEEYRQQLSEHSK 60.347 0.01464 7714500 1380.5 1171.4 1998.1 1241.3 1319 1206.1 991.95 1377.9 1002 1766.9 TRUE FALSE 1399.831259 1299.297413 1493.654943 1161.688574 1498.670131 1419.984901 1180.167334 1260.838794 1098.246577 1406.80481 0.995042986 0.923580446 1.061735738 0.825763863 1.065300687 1.009368812 0.838899132 0.89624288 0.780667346 1 10.45820646 -7.761386737 24.99999998 0.870305905 0.978125383 0.261267642 0.082798866 1.823074372 866283.44 0.031449004 0.022776408 1.73E-08 7.761386737 0.107819478 GSALDDAVNPLHENGDDS(ph)LS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 GSALDDAVNPLHENGDDSLSPR 22 0 Q9BVI0 Q9BVI0 PHF20 PHD finger protein 20 2 GSALDDAVNPLHENGDDS(1)LS(1)PR;GSALDDAVNPLHENGDDS(1)LS(1)PR 95.209 0.00092937 11546500 3084.5 2959.5 3240.2 2981.3 2914.1 2954.6 3125.5 3441.6 2500.59 3589 TRUE FALSE 3127.692516 3282.628218 2422.171436 2790.092762 3311.049756 3478.556825 3718.547309 3149.214598 2740.782842 2857.55983 1.094532644 1.148752227 0.847636298 0.976389972 1.158698314 1.217317233 1.301301645 1.102064274 0.959134018 1 11.48056799 GSALDDAVNPLHENGDDS(ph)LSPR ddPTM_K562_Paclitaxel_30min_R1 1 GSALDDAVNPLHENGDDSLSPR 22 0 Q9BVI0 Q9BVI0 PHF20 PHD finger protein 20 1 GSALDDAVNPLHENGDDS(0.5)LS(0.5)PR 156.31 5.27E-18 22454000 805.99 1144.2 1209.3 1119.3 999.96 853.01 1025 955.87 843.18 1257.7 TRUE FALSE 817.2763467 1269.127625 903.9972586 1047.513108 1136.171481 1004.279347 1219.488399 874.6628771 924.1712064 1001.38005 0.816150019 1.26737858 0.902751417 1.04606948 1.134605669 1.002895301 1.217807764 0.873457462 0.922897562 1 9.967773903 -8.300745179 24.99504918 0.923633116 1.058333762 0.157349579 0.130146779 910.3651445 578907.9128 0.065808758 0.03161436 5.00E-09 8.300745179 0.134700646 GSALGDLAPSRPPS(ph)FSPCPAEDLFPGHR ddPTM_K562_Paclitaxel_30min_R1 1 GSALGDLAPSRPPSFSPCPAEDLFPGHR 28 1 O75427 O75427 LRCH4 Leucine-rich repeat and calponin homology domain-containing protein 4 1 GSALGDLAPS(0.111)RPPS(0.444)FS(0.444)PCPAEDLFPGHR 51.966 0.00782 21670000 2392 2719.9 2633.4 2110.6 2385.5 2101.5 2858.3 3496.6 1917 3588.3 TRUE FALSE 2425.49538 3016.86788 1968.565601 1975.235563 2710.445487 2474.171518 3400.647504 3199.542005 2101.136415 2857.00249 0.848965091 1.055955635 0.689031811 0.691366413 0.948702529 0.866002577 1.190285103 1.11989472 0.735433876 1 11.48028658 -7.560636126 24.64503455 1.022359081 0.847656108 0.217928594 0.149575156 221.0013277 144250.2167 0.05886473 0.045596533 2.75E-08 7.560636126 -0.174702973 GSALGDLAPSRPPSFS(ph)PCPAEDLFPGHR ddPTM_K562_Paclitaxel_30min_R1 1 GSALGDLAPSRPPSFSPCPAEDLFPGHR 28 1 O75427 O75427 LRCH4 Leucine-rich repeat and calponin homology domain-containing protein 4 1 GSALGDLAPS(0.366)RPPS(0.078)FS(0.556)PCPAEDLFPGHR 91.643 1.33E-06 14694000 2010.6 2195.9 2049.6 2456.6 2058.4 1850.8 2803 2679.3 1704.5 3271.5 TRUE FALSE 2038.754603 2435.655788 1532.153131 2299.044671 2338.788929 2179.013393 3334.854617 2451.676741 1868.224841 2604.766504 0.782701482 0.935076439 0.588211315 0.882629851 0.897888131 0.836548455 1.280289274 0.941227069 0.717233133 1 11.34693834 -6.945914506 1.718486743 0.971960456 0.787314265 0.195511654 0.156474875 0.607753532 3.665466846 0.060876064 0.070101165 1.13E-07 6.945914506 -0.184646191 GSALGTPAAAEPVT(ph)PTSK ddPTM_K562_Paclitaxel_30min_R1 1 GSALGTPAAAEPVTPTSK 18 0 P00519-2;P00519 P00519-2 ABL1 Tyrosine-protein kinase ABL1 1 GSALGTPAAAEPVT(0.78)PT(0.214)S(0.005)K 172.95 8.45E-11 13905000 2158.5 1499.7 2573.7 1719.3 1709.1 1456.6 1950.7 2591.5 1393.3 2797.8 TRUE FALSE 2188.72566 1663.442318 1923.937604 1609.031793 1941.908355 1714.907558 2320.835142 2371.335899 1527.13269 2227.606824 0.982545769 0.74673964 0.863679166 0.722314089 0.871746456 0.769843017 1.041851334 1.064521743 0.685548578 1 11.1212789 -7.751487574 24.99992158 0.953357234 0.821594714 0.199017732 0.119337974 307.7875254 773194.0864 0.044293716 0.033891896 1.77E-08 7.751487574 -0.131762521 GSAPHSESDLPEQEEEILGS(ph)DDDEQEDPNDYCK ddPTM_K562_Paclitaxel_30min_R1 2 GSAPHSESDLPEQEEEILGSDDDEQEDPNDYCK 33 0 H3BLV9;Q96SB4-4;Q96SB4;Q96SB4-3;D6RBM8 H3BLV9 SRPK1 SRSF protein kinase 1 1 GSAPHSESDLPEQEEEILGS(1)DDDEQEDPNDYCK;GSAPHSESDLPEQEEEILGS(1)DDDEQEDPNDYCK 130.53 8.17E-25 70758000 5599.5 4710.1 8522.3 5985.1 4953.2 4653.3 4351.7 6163.5 4309.8 7437.5 TRUE FALSE 5677.910276 5224.364647 6370.739963 5601.242474 5627.909698 5478.497419 5177.412358 5639.872204 4723.775547 5921.733417 0.958825715 0.882235703 1.075823499 0.945878863 0.950382143 0.925150971 0.874306895 0.952402245 0.797701486 1 12.53180383 -7.26354152 2.098380725 0.901893917 0.966370697 0.142440674 0.065925807 0.608927371 5.26637634 0.025414574 0.023337657 5.45E-08 7.26354152 0.06447678 GSASYS(ph)PPR ddPTM_K562_Paclitaxel_30min_R1 2 GSASYSPPR 9 0 A0A087WTY1;P0DPB5 A0A087WTY1 POLR1D 1 GS(0.007)AS(0.018)YS(0.974)PPR;GSASYS(1)PPR 88.134 0.01984 33353000 3549.1 3324.8 3209.6 3713.8 3540.5 3326.3 2779.5 3879.7 2514.2 4023.5 TRUE FALSE 3598.79835 3687.812908 2399.296784 3475.61349 4022.776041 3916.172601 3306.895615 3550.095269 2755.700144 3203.508491 1.123392792 1.151179376 0.748959084 1.084939684 1.255740714 1.222463624 1.032273092 1.108189748 0.860213154 1 11.6454371 -8.749907125 24.98730857 0.930106572 1.089232348 0.187064691 0.134036654 345.8431816 749360.1842 0.09842911 0.036508546 1.78E-09 8.749907125 0.159125776 GSAVVGQY(ph)QS(ph)Y(ph)S(ph)EQVR ddPTM_K562_Paclitaxel_30min_R1 1 GSAVVGQYQSYSEQVR 16 0 O95479;O95479-2 O95479 H6PD GDH/6PGL endoplasmic bifunctional protein;Glucose 1-dehydrogenase;6-phosphogluconolactonase 4 GSAVVGQY(1)QS(1)Y(1)S(1)EQVR 44.294 0.029353 51130000 3152.3 2500.8 3279.8 3209.8 2528.4 2744.8 2417.9 2805.7 2838.5 2606.2 TRUE FALSE 3196.441926 2773.845801 2451.773926 3003.937795 2872.810886 3231.551741 2876.683903 2567.338272 3111.150608 2075.055009 1.540413103 1.336757719 1.181546472 1.447642487 1.384450471 1.557333047 1.386316936 1.237238657 1.499309943 1 11.01893387 -11.75113521 2.610954316 0.912777324 1.389538599 0.510107387 0.116456857 31240153.09 24005425.22 17586006.37 0.02933561 1.77E-12 11.75113521 0.476761274 GSDFDCELR ddPTM_K562_Paclitaxel_30min_R1 2 GSDFDCELR 9 0 Q5T6W2;P61978-3;P61978;P61978-2 Q5T6W2 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 ; 159.28 2.86E-05 173043000 5793.4 5600.4 6533.2 6369.1 5702.6 5554.1 5731.6 6399.2 5205.3 7237.9 FALSE TRUE 5874.525474 6211.870611 4883.812858 5960.614433 6479.390666 6539.041652 6819.141179 5855.548017 5705.292323 5762.812007 1.019385235 1.077923521 0.847470445 1.034323942 1.124345312 1.134696333 1.183300995 1.016092146 0.990018816 1 12.49255724 -6.522099135 24.99261372 1.0835509 0.982837962 0.21157045 0.079505433 42.08202032 1349092.089 0.024437648 0.031946886 3.01E-07 6.522099135 -0.100712938 GSDHSASLEPGELAELVR ddPTM_K562_Paclitaxel_30min_R1 2 GSDHSASLEPGELAELVR 18 0 Q9NR45;Q5TBR0;Q5TBR1 Q9NR45 NANS Sialic acid synthase 0 ; 144.97 5.55E-10 6661600 1493.98 1673.86 1877.79 2021.52 1684.36 1544.64 1660.88 1796.82 1650.67 1900.3 FALSE TRUE 1514.900329 1856.617695 1403.71869 1891.868755 1913.798348 1818.560216 1976.02331 1644.168926 1809.224229 1513.017817 1.00124421 1.227095725 0.927760846 1.250394235 1.264888177 1.201942367 1.306014567 1.086681801 1.195771926 1 10.56321326 -5.248192667 23.47577191 1.16935409 1.00124395 0.14650943 0.115476043 1796.522442 3183658.554 0.028353332 0.491451169 5.65E-06 5.248192667 -0.16811014 GSDIDNPTLTVMDIS(ph)PPSR ddPTM_K562_Paclitaxel_30min_R1 1 GSDIDNPTLTVMDISPPSR 19 0 Q9Y2U5 Q9Y2U5 MAP3K2 Mitogen-activated protein kinase kinase kinase 2 1 GSDIDNPT(0.008)LT(0.04)VMDIS(0.762)PPS(0.19)R 80.975 0.0064029 6976000 410.39 384.97 554.52 568.12 414.97 473.36 595.27 538.91 283.12 590.51 TRUE FALSE 416.1367262 427.0023265 414.5245678 531.683326 471.4959395 557.3037497 708.219375 493.1262317 310.314941 470.1637379 0.885088944 0.908199191 0.881660014 1.130847156 1.002833484 1.185339712 1.506324963 1.048839355 0.66001462 1 8.877019463 -6.257606789 23.86248564 1.097747311 0.893304339 0.149619511 0.197153175 329.1426938 2049289.577 0.057692112 0.095120971 5.53E-07 6.257606789 -0.204442972 GSDYSWSYQT(ph)PPS(ph)SPSSSSSRK ddPTM_K562_Paclitaxel_30min_R1 1 GSDYSWSYQTPPSSPSSSSSRK 22 1 Q765P7;A0A087WXN9;H3BPV0 Q765P7 MTSS1L MTSS1-like protein 2 GSDYS(0.001)WS(0.004)Y(0.001)QT(0.992)PPS(0.391)S(0.391)PS(0.033)S(0.033)S(0.008)S(0.033)S(0.112)RK 68.952 0.009194 18757000 556.68 601.13 1013.2 866.91 443.12 583.45 760.63 685.06 899.59 924.99 TRUE FALSE 564.4752375 666.7634063 757.4051289 811.3102727 503.4804461 686.9166655 904.9555717 626.859877 985.999639 736.4765303 0.766453803 0.905342369 1.028417197 1.101610492 0.683634068 0.932706797 1.228763626 0.851160697 1.338806599 1 9.524495741 -7.609365603 9.173579789 1.091700977 0.905507359 0.266787843 0.163785976 0.456233359 44.01708247 0.061342999 0.04745696 2.46E-08 7.609365603 -0.186193618 GSDYSWSYQT(ph)PPSS(ph)PSSSSSRK ddPTM_K562_Paclitaxel_30min_R1 1 GSDYSWSYQTPPSSPSSSSSRK 22 1 Q765P7;A0A087WXN9;H3BPV0 Q765P7 MTSS1L MTSS1-like protein 2 GSDY(0.001)S(0.007)WS(0.007)Y(0.003)QT(0.818)PPS(0.298)S(0.828)PS(0.006)S(0.006)S(0.005)S(0.005)S(0.016)RK 59.691 0.027654 22003000 1567.7 1452.9 2619.1 1505.8 1356.4 1295.9 1319.8 1684.7 1808.5 1946.4 TRUE FALSE 1589.652637 1611.532535 1957.875812 1409.224728 1541.164644 1525.70967 1570.22516 1541.574219 1982.214506 1549.722612 1.025765918 1.039884508 1.263371779 0.909339979 0.994477742 0.984505006 1.013229818 0.994742032 1.279076972 1 10.59779429 -10.83646241 6.952749482 1 1.050374474 0.019114572 0.114112646 6.02E-10 2.35E-10 0.109468626 0.026550041 1.46E-11 10.83646241 0.050374474 GSEGDCS(ph)PEDKNSVTAK ddPTM_K562_Paclitaxel_30min_R1 1 GSEGDCSPEDKNSVTAK 17 1 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 GS(0.048)EGDCS(0.951)PEDKNSVTAK 72.21 0.019828 6411700 1568.6 1210.6 3223 1717.7 1243.1 919.38 1083.6 1686.7 1518.2 2384.2 TRUE FALSE 1590.56524 1342.777402 2409.313788 1607.53441 1412.431266 1082.419134 1289.207443 1543.404307 1664.029893 1898.298731 0.83788985 0.70735832 1.269196333 0.846828997 0.744051104 0.570204845 0.679138337 0.813046061 0.87659011 1 10.89049133 -6.521989747 24.03866965 0.759198149 0.938893021 0.139870923 0.1702744 34.67175729 937562.3068 0.051289372 0.06714419 3.01E-07 6.521989747 0.179694872 GSEGSQS(ph)PGSSVDDAEDDPSR ddPTM_K562_Paclitaxel_30min_R1 2 GSEGSQSPGSSVDDAEDDPSR 21 0 Q8IX07 Q8IX07 ZFPM1 Zinc finger protein ZFPM1 1 GSEGS(0.003)QS(0.994)PGS(0.003)SVDDAEDDPSR;GSEGS(0.028)QS(0.964)PGS(0.005)S(0.002)VDDAEDDPSR 191.71 1.30E-23 100883000 2193.5 2503.8 2779.6 2593.7 2388.5 2124.8 2031.38 2745.8 1305.57 2354.4 TRUE FALSE 2224.215768 2777.173351 2077.855602 2427.351691 2713.854138 2501.603446 2416.82375 2512.527151 1430.975832 1874.571988 1.18651926 1.481497307 1.108442682 1.294883156 1.447719349 1.334493134 1.289266972 1.34032044 0.763361365 1 10.87234551 -8.753962616 24.99998539 0.881680644 1.31352436 0.686100985 0.115976145 79.06060049 264360.5973 0.078122033 0.028232527 1.76E-09 8.753962616 0.431843717 GSEGSQSPGS(ph)SVDDAEDDPSRTLCEACNIR ddPTM_K562_Paclitaxel_30min_R1 1 GSEGSQSPGSSVDDAEDDPSRTLCEACNIR 30 1 Q8IX07 Q8IX07 ZFPM1 Zinc finger protein ZFPM1 1 GS(0.012)EGS(0.062)QS(0.085)PGS(0.421)S(0.421)VDDAEDDPSRTLCEACNIR 81.566 1.19E-06 11338000 202.03 0 209.13 129.82 315.94 169.27 207.91 208.22 283.92 206.8 TRUE FALSE 204.8590433 0 156.332545 121.4939263 358.9763769 199.2876578 247.3598371 190.5304113 311.1917846 164.6540465 1.244178614 0 0.949460693 0.737873917 2.180185574 1.210341696 1.502300383 1.157155961 1.8899735 1 7.363294157 -6.627117447 11.38941511 1.484251951 0.689052463 0.41687359 0.437791209 0.361713745 36.88130651 0.121857125 0.157316304 2.36E-07 6.627117447 -0.795199488 GSEGYLAATYPTVGQT(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 1 GSEGYLAATYPTVGQTSPR 19 0 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 GSEGYLAATYPTVGQT(0.5)S(0.5)PR 130.95 1.06E-08 298320000 4040 4391.9 4117.6 4047.8 3821.1 3727.1 4187.3 4672.7 4175.7 4727.8 TRUE FALSE 4096.572464 4871.422494 3078.060954 3788.192225 4341.598512 4388.048854 4981.818316 4275.724969 4576.794643 3764.271765 1.088277553 1.294120828 0.817704232 1.006354605 1.153370103 1.165709898 1.3234481 1.135870425 1.21585128 1 11.87815507 -6.900403371 5.256779381 1.183652935 1.052845415 0.147486841 0.13189398 0.385603521 16.79111888 0.042313794 0.048258646 1.26E-07 6.900403371 -0.13080752 GSEGYLAATYPTVGQTS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 5 GSEGYLAATYPTVGQTSPR 19 0 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 GSEGYLAATYPTVGQT(0.055)S(0.945)PR;GSEGYLAATYPTVGQT(0.193)S(0.807)PR;GSEGYLAATYPT(0.067)VGQT(0.207)S(0.726)PR;GSEGYLAATYPTVGQT(0.125)S(0.875)PR;GSEGYLAATYPTVGQT(0.012)S(0.988)PR 208.37 3.01E-23 467732400 14078.4 14229.4 15475.5 15067.4 14362.5 14290.8 15335.6 16170 14692.8 17793.1 TRUE FALSE 14275.54104 15783.01401 11568.51863 14101.0444 16318.91566 16825.07273 18245.45004 14796.25757 16104.10909 14166.85645 1.00767175 1.114080182 0.816590375 0.995354506 1.151908027 1.187636282 1.287896867 1.044427719 1.136745413 1 13.79023205 -6.742171565 6.388948125 1.147572018 0.979776101 0.352165338 0.099711953 0.174440614 25.70947235 0.030462878 0.038082178 1.81E-07 6.742171565 -0.167795916 GSEMDNNCS(ph)PTRK ddPTM_K562_Paclitaxel_30min_R1 1 GSEMDNNCSPTRK 13 1 O95243-3;O95243-5;O95243-2;O95243 O95243-3 MBD4 Methyl-CpG-binding domain protein 4 1 GSEMDNNCS(0.992)PT(0.008)RK 147.39 0.00023958 5800200 2017.6 1964.8 3401 2300.2 1949.4 1660.3 1603 2332.8 1721.6 2704 TRUE FALSE 2045.852625 2179.323509 2542.375487 2152.675467 2214.941284 1954.730893 1907.160882 2134.614079 1886.967372 2152.923316 0.950267299 1.012262486 1.180894586 0.999884878 1.028806399 0.907942647 0.885847103 0.991495639 0.876467526 1 11.07208122 -7.202133166 5.46157038 0.92896436 1.040484661 0.367888263 0.066639827 0.232401357 14.67559866 0.022664691 0.022483409 6.28E-08 7.202133166 0.111520301 GSET(ph)PGATPGSK ddPTM_K562_Paclitaxel_30min_R1 3 GSETPGATPGSK 12 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 GS(0.049)ET(0.951)PGATPGSK;GS(0.038)ET(0.962)PGATPGSK;GS(0.176)ET(0.824)PGAT(0.001)PGSK 178.22 0.001156 149157000 22352 18307.2 31606.8 23199.6 19193.3 17145.1 18560.3 25270.2 22605.3 30573.5 TRUE FALSE 22664.99696 20306.04201 23627.27243 21711.68149 21807.75241 20185.54276 22082.02003 23123.33878 24776.64007 24342.60392 0.931083504 0.83417707 0.970614011 0.891921077 0.895867693 0.829226932 0.907134673 0.949912296 1.017830309 1 14.57119588 -8.484566044 2.504156054 1.008519002 0.892129794 0.577336134 0.039339163 0.211327209 2.492276765 0.030693225 0.01071142 3.28E-09 8.484566044 -0.116389208 GSFS(ph)DTGLGDGK ddPTM_K562_Paclitaxel_30min_R1 1 GSFSDTGLGDGK 12 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 GS(0.001)FS(0.655)DT(0.344)GLGDGK 88.092 0.020838 332410000 4530.4 4138.7 7361.2 5312.4 4187.5 3695 3749.8 5143.9 4192.7 6483.3 TRUE FALSE 4593.839577 4590.577262 5502.774018 4971.686441 4757.908395 4350.25637 4461.304975 4706.893588 4595.427568 5161.999901 0.889934069 0.889302083 1.066015909 0.963131836 0.921718033 0.84274631 0.86425902 0.911835273 0.8902417 1 12.3337144 -6.972775746 5.526905554 0.89267648 0.954793381 0.124838342 0.060123043 0.318455961 27.88224979 0.019647178 0.021887422 1.06E-07 6.972775746 0.0621169 GSFSGRLS(ph)PAYSLGSLTGASPCQSPCVQR ddPTM_K562_Paclitaxel_30min_R1 1 GSFSGRLSPAYSLGSLTGASPCQSPCVQR 29 1 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 GS(0.007)FS(0.118)GRLS(0.405)PAY(0.346)S(0.118)LGS(0.006)LT(0.001)GASPCQSPCVQR 63.728 0.00079513 43069000 906.95 1109 1215.2 1355.8 1409.5 1255.5 1189.4 1248.1 712.13 1356.1 TRUE FALSE 919.6500982 1230.08437 908.4077306 1268.845056 1601.497763 1478.145297 1415.082441 1142.066115 780.5332684 1079.726076 0.8517439 1.139255963 0.841331659 1.175154592 1.4832445 1.369000277 1.31059393 1.057736902 0.722899341 1 10.07644963 -6.339817238 8.306152761 1.191292526 0.963995774 0.162112681 0.215269198 0.602455487 58.79951526 0.065183769 0.096862008 4.57E-07 6.339817238 -0.227296753 GSGEKPVSAPGDDTES(ph)LHS(ph)QGEEEFDMPQPPHGHVLHR ddPTM_K562_Paclitaxel_30min_R1 1 GSGEKPVSAPGDDTESLHSQGEEEFDMPQPPHGHVLHR 38 1 A6NNK5;Q12888;Q12888-3;Q12888-2 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 2 GS(0.001)GEKPVS(0.006)APGDDT(0.369)ES(0.812)LHS(0.812)QGEEEFDMPQPPHGHVLHR 56.474 0.0001978 25234000 1196 1163.4 1775.7 1262.8 920.61 892.41 830.17 1509.4 1519.6 1724.7 TRUE FALSE 1212.74769 1290.423946 1327.402573 1181.80966 1046.012668 1050.666383 987.6904237 1381.167049 1665.56437 1373.205193 0.883151109 0.939716768 0.966645466 0.860621316 0.761730784 0.765119728 0.719259167 1.005798008 1.212902761 1 10.4233315 -8.493591926 6.826976486 1.108507099 0.846178001 0.604477478 0.087959631 0.128777019 22.3007456 0.056307441 0.025242794 3.21E-09 8.493591926 -0.262329098 GSGFTVTGGTEELPEEEGGGGS(ph)GGRR ddPTM_K562_Paclitaxel_30min_R1 3 GSGFTVTGGTEELPEEEGGGGSGGRR 26 1 Q7Z3Z5;Q93074-3;Q93074;Q93074-2 Q7Z3Z5 TNRC11;MED12 Mediator of RNA polymerase II transcription subunit 12 1 GSGFTVTGGTEELPEEEGGGGS(1)GGRR;GSGFTVTGGTEELPEEEGGGGS(1)GGRR;GSGFTVTGGTEELPEEEGGGGS(1)GGRR 133.02 1.37E-21 67123000 3482.44 3191.38 3122.46 3491.1 2548.89 3323.07 3485.31 3449.27 2582.7 3502.75 TRUE FALSE 3531.204904 3539.825661 2334.156355 3267.196472 2896.091971 3912.369806 4146.629378 3156.232984 2830.779875 2788.887627 1.266169662 1.269260771 0.836948872 1.171505241 1.038439822 1.402842398 1.486839892 1.131717518 1.015021131 1 11.44547409 -7.223712055 24.97833855 1.23298898 1.11248268 0.048465599 0.183963099 1543.359876 1021821.444 0.063668384 0.06366744 5.97E-08 7.223712055 -0.120506301 GSGGLFS(ph)PSTAHVPDGALGQR ddPTM_K562_Paclitaxel_30min_R1 1 GSGGLFSPSTAHVPDGALGQR 21 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 GS(0.052)GGLFS(0.921)PS(0.024)T(0.002)AHVPDGALGQR 99.943 0.00038472 25627000 1918 1745.8 1859.4 2050.1 1641.9 1632.1 1920.7 2074.6 1806.1 2125.1 TRUE FALSE 1944.857918 1936.412348 1389.971473 1918.615762 1865.554578 1921.530019 2285.142798 1898.349781 1979.583975 1692.003454 1.149440868 1.144449406 0.821494466 1.133931351 1.102571377 1.135653722 1.350554453 1.121953845 1.1699645 1 10.7245168 -6.923754131 2.047407624 1.173338145 1.048279382 0.116834636 0.119198396 0.590733282 5.042246312 0.043095295 0.04979508 1.19E-07 6.923754131 -0.125058763 GSGHSQEQPAPQPS(ph)GGDPSPPQER ddPTM_K562_Paclitaxel_30min_R1 1 GSGHSQEQPAPQPSGGDPSPPQER 24 0 Q8WXE0-2;Q8WXE0 Q8WXE0-2 CASKIN2 Caskin-2 1 GSGHSQEQPAPQPS(0.611)GGDPS(0.389)PPQER 123.71 1.67E-12 0 705.55 622.16 1055.6 752.95 572.33 561.15 625.8 773.12 801.79 730.89 TRUE FALSE 715.4298768 690.0895328 789.1007245 704.6591571 650.2910356 660.6620736 744.5422831 707.4386303 878.805512 581.9342168 1.229399915 1.185854883 1.355996437 1.210891432 1.117464856 1.135286523 1.279426886 1.215667699 1.510145798 1 9.184712267 -12.01986203 11.87054413 0.583880226 1.241793882 0.318755891 0.108716633 0.025448044 4.26E-05 0.002237433 0.025698372 9.55E-13 12.01986203 0.657913656 GSGHSQEQPAPQPSGGDPS(ph)PPQER ddPTM_K562_Paclitaxel_30min_R1 2 GSGHSQEQPAPQPSGGDPSPPQER 24 0 Q8WXE0-2;Q8WXE0 Q8WXE0-2 CASKIN2 Caskin-2 1 GSGHSQEQPAPQPS(0.029)GGDPS(0.971)PPQER;GSGHSQEQPAPQPS(0.147)GGDPS(0.853)PPQER 131.97 7.80E-14 15088400 3422.8 3060.1 4027.2 3732.1 3035.4 3302.9 3536.8 3924.1 2806.6 3996.2 TRUE FALSE 3470.72976 3394.212067 3010.483552 3492.73981 3448.87287 3888.62294 4207.889337 3590.723212 3076.18647 3181.772246 1.09081653 1.066767765 0.946165633 1.097734074 1.083947122 1.222156282 1.322498599 1.128529302 0.96681542 1 11.63561485 -6.788890063 2.536949466 1.146748419 1.039093897 0.094659339 0.103157185 0.532201314 7.014857886 0.035874491 0.04458127 1.63E-07 6.788890063 -0.107654522 GSGKRPAAAAAAGSAS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 GSGKRPAAAAAAGSASPR 18 2 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 GSGKRPAAAAAAGS(0.013)AS(0.987)PR 69.765 0.012092 32631000 4601.1 4045.2 6617.1 4627.7 4138.6 3654.8 3485.2 4529.3 6013.2 4784.8 TRUE FALSE 4665.529596 4486.868616 4946.531266 4330.900035 4702.347387 4302.927464 4146.498506 4144.507694 6590.794728 3809.655134 1.224659302 1.177762411 1.298419697 1.13682207 1.234323639 1.129479523 1.088418337 1.087895767 1.730023978 1 11.89544469 GSGPQRPHS(ph)FSEALR ddPTM_K562_Paclitaxel_30min_R1 1 GSGPQRPHSFSEALR 15 1 Q6DT37 Q6DT37 CDC42BPG Serine/threonine-protein kinase MRCK gamma 1 GSGPQRPHS(0.981)FS(0.019)EALR 73.918 0.022855 9624300 1232.9 1144.6 1244.7 1434.2 1330.6 1047.9 1343.3 1307.9 1426.5 1686.8 TRUE FALSE 1250.164404 1269.571299 930.4600907 1342.216831 1511.850247 1233.730352 1598.184163 1196.785731 1563.521699 1343.029234 0.9308542 0.945304292 0.692807027 0.999395097 1.125701667 0.918617645 1.189984642 0.891109219 1.164175477 1 10.39127499 -6.503196167 24.2495785 1.045162475 0.862033548 0.373428328 0.111228449 534.4902249 658509.1825 0.029554973 0.043103766 3.14E-07 6.503196167 -0.183128927 GSGS(ph)PTHSLSQK ddPTM_K562_Paclitaxel_30min_R1 1 GSGSPTHSLSQK 12 0 I3L2R2;I3L419;I3L156;Q9BSJ6-2;Q9BSJ6 I3L2R2 FAM64A Protein FAM64A 1 GS(0.013)GS(0.753)PT(0.225)HS(0.01)LSQK 132.97 0.00058103 8635400 2224.3 1891.5 3057.3 2323.3 1955.1 2001.4 1472.3 2338.1 2222.4 2915.1 TRUE FALSE 2255.447063 2098.020367 2285.446803 2174.293937 2221.41772 2356.320189 1751.661239 2139.463811 2435.87145 2321.00102 0.97175617 0.903929102 0.984681516 0.936791461 0.957094676 1.015217214 0.754700762 0.921784951 1.049491762 1 11.18053144 GSGTAS(ph)DDEFENLR ddPTM_K562_Paclitaxel_30min_R1 3 GSGTASDDEFENLR 14 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 GSGT(0.142)AS(0.858)DDEFENLR;GSGT(0.022)AS(0.978)DDEFENLR;GSGT(0.289)AS(0.711)DDEFENLR 247.11 1.83E-58 1402523000 5503.7 4869.3 6005.9 5608.6 5547.3 4878.7 5195.3 5811.1 5138.5 6499.5 TRUE FALSE 5580.76878 5400.946641 4489.636265 5248.889499 6302.936177 5743.868945 6181.081054 5317.410783 5632.075884 5174.898332 1.078430613 1.043681691 0.867579608 1.014298091 1.21798261 1.109948172 1.194435264 1.027539179 1.088345224 1 12.3373148 -6.548629167 24.45403038 1.112679822 0.991219581 0.293424859 0.079976756 199.818714 189757.4924 0.023879953 0.030830027 2.83E-07 6.548629167 -0.121460241 GSHS(ph)PQRPQLHS(ph)PAQSEGPSSLCGK ddPTM_K562_Paclitaxel_30min_R1 1 GSHSPQRPQLHSPAQSEGPSSLCGK 25 1 Q5SY21;Q5SY20;P10074 Q5SY21 ZBTB48 Zinc finger and BTB domain-containing protein 48 2 GS(0.637)HS(0.681)PQRPQLHS(0.681)PAQS(0.002)EGPSSLCGK 58.137 0.01129 12746000 2858.3 2984.5 4820.5 4020.2 3081 2347.8 2450.3 2689.7 3529.2 4859.2 TRUE FALSE 2898.325019 3310.357803 3603.505156 3762.362366 3500.684362 2764.149365 2915.231634 2461.193196 3868.195429 3868.892373 0.749135602 0.855634503 0.931404859 0.972464986 0.904828572 0.714454965 0.753505488 0.636149306 0.99981986 1 11.91770488 -7.23285607 24.49835805 0.793840212 0.888883897 0.037602484 0.121411689 1224.501801 1049504.114 0.039570228 0.039562825 5.85E-08 7.23285607 0.095043685 GSHSLLPNQVPVPQLPVQS(ph)ATSPDLNPPQDPYR ddPTM_K562_Paclitaxel_30min_R1 1 GSHSLLPNQVPVPQLPVQSATSPDLNPPQDPYR 33 0 A0A1B0GVB8;P15884-12;P15884-15;P15884-5;P15884-4;P15884-10;P15884-13;P15884-14;P15884;P15884-3;A0A1B0GVR6;H3BTP3;H3BPJ7;E9PH57;A0A1B0GW91;P15884-8;A0A1B0GWD5;P15884-11;P15884-16;P15884-6;P15884-2;P15884-9;P15884-7 A0A1B0GVB8 TCF4 Transcription factor 4 1 GSHSLLPNQVPVPQLPVQS(0.333)AT(0.333)S(0.333)PDLNPPQDPY(0.001)R 68.368 9.06E-05 57736000 1760.8 1803.5 1503 1996.4 1468.6 1745.1 1973.4 2000.7 1622.6 2086.1 TRUE FALSE 1785.456633 2000.412229 1123.549061 1868.35984 1668.648184 2054.568983 2347.842348 1830.728047 1778.45798 1660.951675 1.074960012 1.204377141 0.676448977 1.124873088 1.004633794 1.236982998 1.413552473 1.102216323 1.070746372 1 10.69779438 -7.252707675 23.81866293 1.186641456 1.014532108 0.158832443 0.166037097 577.1333724 1574325.377 0.05613761 0.055238235 5.59E-08 7.252707675 -0.172109348 GSHSLLPNQVPVPQLPVQSAT(ph)SPDLNPPQDPYR ddPTM_K562_Paclitaxel_30min_R1 1 GSHSLLPNQVPVPQLPVQSATSPDLNPPQDPYR 33 0 A0A1B0GVB8;P15884-12;P15884-15;P15884-5;P15884-4;P15884-10;P15884-13;P15884-14;P15884;P15884-3;A0A1B0GVR6;H3BTP3;H3BPJ7;E9PH57;A0A1B0GW91;P15884-8;A0A1B0GWD5;P15884-11;P15884-16;P15884-6;P15884-2;P15884-9;P15884-7 A0A1B0GVB8 TCF4 Transcription factor 4 1 GSHSLLPNQVPVPQLPVQS(0.005)AT(0.566)S(0.429)PDLNPPQDPYR 92.126 5.00E-10 55898000 1197 1624.2 1147.8 1327.3 1046.6 1279.4 1727.5 1533.5 1381.6 1689.1 TRUE FALSE 1213.761693 1801.535649 858.0236942 1242.172919 1189.164639 1506.283626 2055.284107 1403.219603 1514.308853 1344.860493 0.902518662 1.339570653 0.638002007 0.923644441 0.884228993 1.120029649 1.528250787 1.043394174 1.12599698 1 10.39324081 -7.409338863 5.362738311 1.196461029 0.944187598 0.226151839 0.208308175 0.34086618 13.83350554 0.075293489 0.065785285 3.90E-08 7.409338863 -0.252273431 GSIELR ddPTM_K562_Paclitaxel_30min_R1 1 GSIELR 6 0 P35590 P35590 TIE1 Tyrosine-protein kinase receptor Tie-1 0 124.32 0.011728 4689300 1736.7 1763.2 2162.4 1849.1 1470.1 1426.3 1604.9 1898.3 1475.6 1670.4 FALSE TRUE 1761.019158 1955.712139 1616.475376 1730.507002 1670.352509 1679.234279 1909.421397 1737.027566 1617.337973 1329.971563 1.324102866 1.470491695 1.215421006 1.301160905 1.255930995 1.26260916 1.435685882 1.306063689 1.21606959 1 10.37717968 -9.110671332 2.39430576 1.000567367 1.32203 0.636816544 0.0740842 0.293753109 3.548865044 0.073046841 0.019904728 7.75E-10 9.110671332 0.321462633 GSISSGLEFVSHNPPS(ph)EAATPPVAR ddPTM_K562_Paclitaxel_30min_R1 1 GSISSGLEFVSHNPPSEAATPPVAR 25 0 Q99700;Q99700-4;Q99700-2;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;A0A5F9ZHH4;A0A5F9ZHX3;F8WB06;F8W0B5;F8VRK6 Q99700 ATXN2 Ataxin-2 1 GSISSGLEFVS(0.004)HNPPS(0.791)EAAT(0.205)PPVAR 65.111 0.0022384 12664000 1983 1410.3 2911.5 2327.5 1647.4 1685.3 1056.3 1269.5 1532 1431.6 TRUE FALSE 2010.768118 1564.281323 2176.455816 2178.224568 1871.803771 1984.164292 1256.727411 1161.648051 1679.155445 1139.839134 1.764080613 1.372370255 1.90944121 1.910992966 1.642164859 1.74074063 1.102548047 1.019133329 1.47315125 1 10.15461452 -7.759752673 24.99893598 1.150302527 1.720651918 0.694864958 0.186528585 26.09553949 386775.0696 0.0746378 0.0547384 1.74E-08 7.759752673 0.570349391 GSISSGLEFVSHNPPSEAAT(ph)PPVAR ddPTM_K562_Paclitaxel_30min_R1 1 GSISSGLEFVSHNPPSEAATPPVAR 25 0 Q99700;Q99700-4;Q99700-2;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;A0A5F9ZHH4;A0A5F9ZHX3;F8WB06;F8W0B5;F8VRK6 Q99700 ATXN2 Ataxin-2 1 GSISSGLEFVSHNPPS(0.102)EAAT(0.898)PPVAR 121.38 6.66E-09 12808000 747.76 861.38 739.52 972.17 742.19 706.05 823.28 967.91 533.94 1047.9 TRUE FALSE 758.230947 955.4283814 552.8190297 909.8193675 843.2888434 831.2580541 979.4930822 885.680004 585.2273227 834.3374048 0.908782158 1.145134302 0.662584497 1.09046935 1.010728799 0.996309226 1.17397719 1.061536974 0.701427647 1 9.704487115 GSISSTSEVHS(ph)PPNVGLRR ddPTM_K562_Paclitaxel_30min_R1 2 GSISSTSEVHSPPNVGLRR 19 1 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 GSISSTSEVHS(0.999)PPNVGLRR;GSIS(0.001)S(0.001)T(0.004)S(0.002)EVHS(0.993)PPNVGLRR 59.975 0.024049 38186500 1782.92 1881.43 2172.2 1947.58 1817.99 1736.17 1748.78 1902.03 1897.73 2415.79 TRUE FALSE 1807.886381 2086.85089 1623.801245 1822.670936 2065.631017 2044.055372 2080.601876 1740.440679 2080.015446 1923.450672 0.939918245 1.084951603 0.844212575 0.94760472 1.073919413 1.062702258 1.081702747 0.904853296 1.081397863 1 10.90948112 -6.745780577 24.98103103 1.033149252 0.955658949 0.220238173 0.073640487 401.3261668 640246.7279 0.021917164 0.028200959 1.80E-07 6.745780577 -0.077490303 GSLAEAVGS(ph)PPPAATPTPTPPTRK ddPTM_K562_Paclitaxel_30min_R1 1 GSLAEAVGSPPPAATPTPTPPTRK 24 1 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 1 GSLAEAVGS(1)PPPAATPTPTPPTRK 105.46 3.44E-06 7751200 1075.6 1300.9 1652.4 1413.2 1138.9 1123.9 941.29 1344.7 1298.5 1291.7 TRUE FALSE 1090.661719 1442.936661 1235.231183 1322.563677 1294.037462 1323.207885 1119.894864 1230.459342 1423.226727 1028.450831 1.0604899 1.403019588 1.201060028 1.285976575 1.258239502 1.286602961 1.088914346 1.196420193 1.383854905 1 10.00625711 -7.712582598 24.99948877 1.183664174 1.256111894 0.090855671 0.121513727 308.3117597 157758.9144 0.044193402 0.034231996 1.94E-08 7.712582598 0.07244772 GSLAEAVGSPPPAAT(ph)PTPTPPTR ddPTM_K562_Paclitaxel_30min_R1 2 GSLAEAVGSPPPAATPTPTPPTR 23 0 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 1 GSLAEAVGS(0.001)PPPAAT(0.969)PT(0.029)PT(0.001)PPTR;GSLAEAVGSPPPAAT(0.99)PT(0.01)PTPPTR 220.16 1.78E-44 56042000 5355.6 4623.1 4569.8 4635.5 4088.4 4656.4 5203.1 5780.5 5167.9 6700.5 TRUE FALSE 5430.594923 5127.865692 3416.097471 4338.199778 4645.309297 5482.147161 6190.361063 5289.410444 5664.299886 5334.934422 1.017930961 0.961186265 0.640326047 0.813168342 0.870734095 1.027594105 1.160344359 0.991466816 1.061737491 1 12.38125482 -7.271278523 4.063437047 1.057389013 0.849402415 0.457334433 0.102184934 0.207173675 8.189157778 0.038909827 0.036020439 5.35E-08 7.271278523 -0.207986598 GSLAS(ph)LDSLR ddPTM_K562_Paclitaxel_30min_R1 2 GSLASLDSLR 10 0 O60716;O60716-21;O60716-2;O60716-10;O60716-9;O60716-17;O60716-5;O60716-3;A0A669KB05;O60716-11;C9JZR2;O60716-18;O60716-19;O60716-13;O60716-23;O60716-14;O60716-12;O60716-7;O60716-4;O60716-22;O60716-6;O60716-8;A0A669KB62;O60716-16;O60716-15;O60716-24;O60716-20;O60716-25;O60716-27;O60716-29;O60716-26;O60716-32;O60716-30;O60716-31;O60716-28;E9PKY0 O60716 CTNND1 Catenin delta-1 1 GS(0.014)LAS(0.985)LDSLR;GS(0.004)LAS(0.995)LDSLR 141.89 0.00080518 32548000 4505.2 4366.2 5137.9 5112.2 4203.3 3730.4 4867.2 4693.5 5196.9 4850.8 TRUE FALSE 4568.2867 4842.916482 3840.7736 4784.326373 4775.860622 4391.934063 5790.725792 4294.757879 5696.085465 3862.204297 1.182818502 1.253925507 0.994451175 1.238755386 1.236563438 1.137157365 1.499331818 1.111996556 1.474827592 1 11.91520876 -6.492367638 24.68964029 1.254701624 1.148393123 0.07488655 0.156109893 1452.378433 1175266.271 0.041365515 0.061265673 3.22E-07 6.492367638 -0.1063085 GSLGIS(ph)QEEQ ddPTM_K562_Paclitaxel_30min_R1 2 GSLGISQEEQ 10 0 H3BRR0;Q9NZD8-2;Q9NZD8 H3BRR0 SPG21 Maspardin 1 GS(0.002)LGIS(0.998)QEEQ;GSLGIS(1)QEEQ 115 0.0040912 37170000 10675.3 11014.6 13004.5 12317.3 11673.7 10295.8 10157 11484.8 9746.8 12098.5 TRUE FALSE 10824.78714 12217.21128 9721.353137 11527.32351 13263.85558 12121.61557 12084.23773 10509.09455 10683.02369 9632.819059 1.123740316 1.268290331 1.009190879 1.196671861 1.376944329 1.258366372 1.254486112 1.09096771 1.109023602 1 13.23374235 -8.366933871 4.784895774 1.068654025 1.214114708 0.332972678 0.094891679 0.306260238 11.01909578 0.058458123 0.02678528 4.30E-09 8.366933871 0.145460683 GSLLDVAT(ph)SPAGTSGR ddPTM_K562_Paclitaxel_30min_R1 1 GSLLDVATSPAGTSGR 16 0 Q711Q0 Q711Q0 C10orf71 Uncharacterized protein C10orf71 1 GSLLDVAT(0.5)S(0.5)PAGTSGR 133.87 8.72E-07 15622000 1371.2 1395.5 1494.5 1664.9 1773.6 1103.2 1407.3 1736.2 977.64 1844.9 TRUE FALSE 1390.401031 1547.865409 1117.194991 1558.120766 2015.194347 1298.83703 1674.327828 1588.698973 1071.54669 1468.908367 0.946553959 1.05375219 0.760561391 1.060733808 1.371899291 0.884219233 1.13984498 1.081550768 0.729485048 1 10.52052869 -5.236705521 20.27707615 1.017029656 0.946552887 0.009311516 0.177432841 3252.03738 2665481.048 0.044265957 1.801764264 5.80E-06 5.236705521 -0.070476769 GSLLPTS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 5 GSLLPTSPR 9 0 Q9H0E9-3;H7C128;H7C179;Q9H0E9-4;H7C127;Q9H0E9-2 Q9H0E9-3 BRD8 1 GSLLPT(0.002)S(0.998)PR;GSLLPT(0.013)S(0.987)PR;GSLLPT(0.003)S(0.997)PR;GSLLPT(0.004)S(0.996)PR;GSLLPT(0.004)S(0.996)PR 105.17 0.0086743 1023944000 25293.5 26116.8 28324.5 28352.7 26161 25107.6 25559 27535.2 25269.4 27319.8 TRUE FALSE 25647.68704 28968.32055 21173.62966 26534.28472 29724.57111 29560.08033 30408.68682 25195.91289 27696.63878 21752.00976 1.17909505 1.331753749 0.973410268 1.219854396 1.366520677 1.358958581 1.397971367 1.158325744 1.273291024 1 14.40886108 -4.969194996 17.61738677 1.241945594 0.959810941 0.006834673 0.141680014 47640192.69 694623154.4 0.035714751 412974740.2 1.07E-05 4.969194996 -0.282134654 GSLLTILGSPS(ph)PER ddPTM_K562_Paclitaxel_30min_R1 2 GSLLTILGSPSPER 14 0 Q96A19 Q96A19 CCDC102A Coiled-coil domain-containing protein 102A 1 GSLLTILGS(0.001)PS(0.999)PER;GSLLTILGSPS(1)PER 193.98 3.02E-07 19060600 2441.88 2638.7 2495.87 2700.6 3289.5 2408.08 2403.3 2758.91 2392.26 3827.1 TRUE FALSE 2476.073854 2926.80219 1865.75675 2527.395603 3737.585592 2835.119177 2859.313629 2524.523375 2622.047262 3047.134919 0.812590817 0.96050955 0.6122987 0.829433442 1.226590122 0.930421282 0.938361348 0.828490842 0.860495952 1 11.57323766 -5.231902388 21.30214203 0.90391872 0.812589766 0.03639386 0.147175015 6154.383891 4438012.536 0.038710158 2.805678338 5.86E-06 5.231902388 -0.091328955 GSLPQLVS(ph)PIVSR ddPTM_K562_Paclitaxel_30min_R1 2 GSLPQLVSPIVSR 13 0 F5H1U9;O75970-5;O75970-3;O75970-2;O75970 F5H1U9 MPDZ Multiple PDZ domain protein 1 GSLPQLVS(0.998)PIVS(0.002)R;GSLPQLVS(0.962)PIVS(0.038)R 132.23 0.00031779 78617000 2732.7 2658.2 2963.7 3097.1 2955.3 2876.6 3183.9 2968.1 2822.3 3176.8 TRUE FALSE 2770.966231 2948.431265 2215.47728 2898.465868 3357.861894 3386.724621 3788.028404 2715.941379 3093.394525 2529.366416 1.095517918 1.165679771 0.87590207 1.145925655 1.327550596 1.338961646 1.497619475 1.073763517 1.222991855 1 11.30456033 -6.536870075 7.708768008 1.262589331 1.049886476 0.261358701 0.147393983 0.188426144 63.8971943 0.043709685 0.057867078 2.90E-07 6.536870075 -0.212702855 GSLVGLVDYPDDEEEDEEEES(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 1 GSLVGLVDYPDDEEEDEEEESSPR 24 0 Q5MIZ7-5;Q5MIZ7-3;Q5MIZ7-2;Q5MIZ7 Q5MIZ7-5 SMEK2 Serine/threonine-protein phosphatase 4 regulatory subunit 3B 1 GSLVGLVDYPDDEEEDEEEES(0.603)S(0.397)PR 101.06 1.75E-05 6930300 1719.3 2140 2259.5 2259.4 2124.7 2005.8 2199.5 2480.5 1445.8 2622.9 TRUE FALSE 1743.375504 2373.652437 1689.06128 2114.492197 2414.120111 2361.500467 2616.843643 2269.766042 1584.67555 2088.35154 0.834809404 1.13661536 0.808801223 1.012517364 1.155993167 1.13079643 1.253066638 1.086869714 0.758816473 1 11.02814887 -5.244306772 23.17259786 1.046202296 0.834808931 0.146143503 0.146304696 2541.555577 3437412.886 0.037827354 0.965628722 5.70E-06 5.244306772 -0.211393365 GSMSNGHGS(ph)PGEK ddPTM_K562_Paclitaxel_30min_R1 1 GSMSNGHGSPGEK 13 0 Q15742-2;Q15742-3;Q15742 Q15742-2 NAB2 NGFI-A-binding protein 2 1 GSMSNGHGS(1)PGEK 84.859 0.021169 0 531.6 355.77 688.37 489.59 470.33 330.85 306.48 458.34 476.22 763.82 TRUE FALSE 539.0440401 394.6141717 514.5824798 458.1898887 534.3969088 389.5216021 364.6329801 419.4011561 521.9630588 608.1530647 0.88636245 0.648873112 0.846139746 0.753412118 0.878721065 0.640499283 0.599574353 0.689630918 0.858275801 1 9.248290668 -9.015127663 4.319719786 0.99962518 0.740584132 0.413100104 0.096309243 0.176471915 10.20218009 0.095268553 0.024958601 9.66E-10 9.015127663 -0.259041047 GSNMDFREPTEEER ddPTM_K562_Paclitaxel_30min_R1 1 GSNMDFREPTEEER 14 1 Q15056-2;Q15056 Q15056-2 EIF4H Eukaryotic translation initiation factor 4H 0 116.9 0.014988 78058000 4040.7 4032.2 3893.8 4255.4 3880.8 3339 4287.1 4420.4 3455.3 4264.5 FALSE TRUE 4097.282267 4472.449232 2910.762032 3982.47769 4409.430662 3931.124768 5100.554845 4044.859429 3787.197004 3395.392559 1.206718279 1.317211237 0.85726819 1.172906408 1.298651212 1.157782112 1.502198864 1.191278875 1.115392974 1 11.72936267 -4.216107619 13.08453947 1.193208926 1.224072671 0 0.167351158 0 0 0.038558165 0 6.08E-05 4.216107619 0.030863744 GSNRSS(ph)LMDTADGVPVSSR ddPTM_K562_Paclitaxel_30min_R1 1 GSNRSSLMDTADGVPVSSR 19 1 Q9P265 Q9P265 DIP2B Disco-interacting protein 2 homolog B 1 GS(0.314)NRS(0.051)S(0.635)LMDTADGVPVSSR 170.98 5.61E-13 10894000 729.06 765.55 888.8 840.88 754.73 792.83 934.08 931.72 1080.3 1215.7 TRUE FALSE 739.2690893 849.1353379 664.4114475 786.9497204 857.5370037 933.4272686 1111.316804 852.5645704 1184.067642 967.9396727 0.763755335 0.8772606 0.686418241 0.813015256 0.885940548 0.964344468 1.148126102 0.880803416 1.223286611 1 9.918773323 -7.177814013 1.736487579 1.054092043 0.783412575 0.625535606 0.096201915 0.234471999 1.40138439 0.037121737 0.035984698 6.64E-08 7.177814013 -0.270679468 GSPVSS(ph)PQNSPGTQR ddPTM_K562_Paclitaxel_30min_R1 1 GSPVSSPQNSPGTQR 15 0 A0A2R8YE75;A0A2R8Y6F3;Q9P2P5 A0A2R8YE75 HECW2 E3 ubiquitin-protein ligase HECW2 1 GSPVS(0.158)S(0.497)PQNS(0.341)PGT(0.004)QR 100.18 0.0052124 2227700 577.37 508.29 482.8 569.12 543.54 347.71 627.33 527.81 765.47 811.18 TRUE FALSE 585.4549613 563.7868211 360.9111688 532.6191905 617.5793502 409.3714864 746.3625926 482.969246 838.9968137 645.8610707 0.906471977 0.872922749 0.558806197 0.824665264 0.95621083 0.633838305 1.155608577 0.747791232 1.299036049 1 9.335080054 -8.089901594 1.138333848 1.078763185 0.795006192 0.269172908 0.182232566 0.691205511 1.635408074 0.141379578 0.061382406 8.13E-09 8.089901594 -0.283756993 GSQGAQS(ph)SPLSEPSR ddPTM_K562_Paclitaxel_30min_R1 1 GSQGAQSSPLSEPSR 15 0 Q9NX94;Q9NX94-2 Q9NX94 WBP1L WW domain binding protein 1-like 1 GSQGAQS(0.496)S(0.496)PLS(0.008)EPSR 101.96 0.0031033 0 1530.7 1342.1 1635 1577.3 1613.7 1682.1 1456.2 1887.3 1569 1769.8 TRUE FALSE 1552.134523 1488.635017 1222.224029 1476.139038 1833.51326 1980.396817 1732.506348 1726.962085 1719.70946 1409.113789 1.101496937 1.056433504 0.867370711 1.047565534 1.301181832 1.405420083 1.229500671 1.225566096 1.220419156 1 10.4605724 -6.682793334 5.658689103 1.249970976 1.005671188 0.463921311 0.110764458 0.167648378 9.01851372 0.033083061 0.042640801 2.08E-07 6.682793334 -0.244299789 GSQHSPT(ph)RPPVAAAAASLGSLPGPGAAR ddPTM_K562_Paclitaxel_30min_R1 1 GSQHSPTRPPVAAAAASLGSLPGPGAAR 28 1 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 GS(0.026)QHS(0.41)PT(0.564)RPPVAAAAASLGSLPGPGAAR 59.083 0.016671 82574000 756.8 674.97 899.42 848.59 727.97 738.08 901.85 785.32 683.68 899.46 TRUE FALSE 767.3975349 748.6655072 672.3502971 794.1652355 827.1318386 868.9681248 1072.97133 718.6021642 749.3505188 716.1495583 1.071560439 1.045403853 0.938840623 1.108937688 1.154970815 1.213389179 1.498250354 1.003424712 1.046360373 1 9.484117096 -6.535694328 3.737372149 1.172298229 1.020515981 0.147143032 0.13879284 0.400015016 12.24799921 0.043745324 0.061220413 2.91E-07 6.535694328 -0.151782248 GSRPPLILQSQSLPCS(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 2 GSRPPLILQSQSLPCSSPR 19 1 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 GSRPPLILQSQSLPCS(0.86)S(0.14)PR;GSRPPLILQSQSLPCS(0.853)S(0.147)PR 168.86 1.14E-12 276110000 1832.63 1698.58 1796.31 1886.46 1790.26 1661.21 1711.95 1968.94 1642.73 2336.2 TRUE FALSE 1858.292474 1884.036709 1342.809324 1765.470899 2034.123721 1955.802269 2036.783576 1801.666257 1800.521556 1860.081158 0.999038384 1.012878767 0.721908998 0.949136489 1.093567188 1.051460718 1.094997155 0.96859551 0.967980106 1 10.86114985 -6.543635519 14.07700955 1.031264603 0.907122319 0.291950125 0.084378983 2.165700652 1466.548684 0.026059128 0.033724563 2.86E-07 6.543635519 -0.124142284 GSS(ph)FEMTDDDSAIR ddPTM_K562_Paclitaxel_30min_R1 1 GSSFEMTDDDSAIR 14 0 H7BXY3;Q7L2E3-3;Q7L2E3;Q7L2E3-2 H7BXY3 DHX30 Putative ATP-dependent RNA helicase DHX30 1 GS(0.157)S(0.843)FEMTDDDSAIR 145.61 1.26E-05 41010000 1890.5 1793.6 2095.1 1882.3 1781.2 2036.4 1901.5 2279.2 1798.4 2606.4 TRUE FALSE 1916.972833 1989.431314 1566.166093 1761.577703 2023.829596 2397.526948 2262.299699 2085.567734 1971.144355 2075.214249 0.92374695 0.958663094 0.754700915 0.848865462 0.975238868 1.155315384 1.090152354 1.004989116 0.949851012 1 11.01904458 -6.93575978 4.628908634 1.045787393 0.870847997 0.548164918 0.071921832 0.166585619 7.109019574 0.024762632 0.028018191 1.16E-07 6.93575978 -0.174939396 GSS(ph)FQSGRDDTWR ddPTM_K562_Paclitaxel_30min_R1 1 GSSFQSGRDDTWR 13 1 Q96KP1 Q96KP1 EXOC2 Exocyst complex component 2 1 GS(0.003)S(0.995)FQS(0.003)GRDDTWR 155.43 0.0020984 19560000 1418 1565.2 1795.8 1437.1 1599 1376.1 1413.4 1946.4 1625.6 1602.8 TRUE FALSE 1437.856375 1736.093829 1342.42808 1344.930838 1816.810871 1620.132014 1681.585272 1781.041171 1781.746143 1276.14848 1.12671558 1.360416798 1.051937216 1.053898397 1.423667308 1.269548206 1.317703463 1.395637889 1.396190311 1 10.31758048 -6.761121694 24.99999996 1.31955655 1.156518435 0.217630543 0.138221467 12.34701489 971595.3753 0.040758753 0.049381161 1.73E-07 6.761121694 -0.163038115 GSS(ph)PGIQDTLEAEDGAFETDEAPEDR ddPTM_K562_Paclitaxel_30min_R1 1 GSSPGIQDTLEAEDGAFETDEAPEDR 26 0 Q9UNX4 Q9UNX4 WDR3 WD repeat-containing protein 3 1 GS(0.485)S(0.515)PGIQDTLEAEDGAFETDEAPEDR 170.17 3.66E-27 35695000 1673.9 2234 2360.9 1941.9 2032.7 1913.7 2001.5 2150 1932.6 2368.5 TRUE FALSE 1697.339764 2477.915675 1764.861596 1817.355226 2309.588154 2253.067825 2381.274176 1967.34408 2118.234865 1885.7984 0.900064272 1.313987579 0.935869707 0.963705996 1.224726967 1.194755402 1.262740586 1.043241992 1.123256264 1 10.88095974 -6.763367869 24.99995827 1.152345075 1.042195716 0.149033032 0.129120743 104.6267949 1356335.023 0.039102184 0.046600871 1.72E-07 6.763367869 -0.11014936 GSS(ph)PGPRPVEGTPASR ddPTM_K562_Paclitaxel_30min_R1 1 GSSPGPRPVEGTPASR 16 1 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 1 GS(0.182)S(0.817)PGPRPVEGTPASR 71.402 0.026526 141730000 3295.7 3015.9 3741.5 3270 3101.8 3077 3189.7 3529.8 3557 3514 TRUE FALSE 3341.849968 3345.186161 2796.912051 3060.276836 3524.317674 3622.662747 3794.928924 3229.921458 3898.665743 2797.844871 1.194437191 1.195629606 0.999666593 1.093797897 1.259654426 1.294804721 1.356375746 1.154431931 1.393453148 1 11.45010026 -6.767215889 24.87262988 1.25908864 1.117563569 0.20453783 0.115474188 178.6571007 769265.6158 0.034121069 0.039747338 1.71E-07 6.767215889 -0.14152507 GSS(ph)PQNTTTPKPSVEGQQPAAAAACEPVDHAQSESILK ddPTM_K562_Paclitaxel_30min_R1 1 GSSPQNTTTPKPSVEGQQPAAAAACEPVDHAQSESILK 38 1 Q27J81;Q27J81-2 Q27J81 INF2 Inverted formin-2 1 GS(0.188)S(0.572)PQNT(0.071)T(0.071)T(0.071)PKPS(0.027)VEGQQPAAAAACEPVDHAQSESILK 59.888 0.00011805 12358000 792.32 453.35 1421.7 913.47 527.48 454.03 490.91 812.99 626.56 1022.8 TRUE FALSE 803.4149245 502.8482861 1062.774252 854.8841227 599.3317063 534.5458456 584.0576098 743.921425 686.7438875 814.3527986 0.98656863 0.617482112 1.305053846 1.04977121 0.735960762 0.656405733 0.717204645 0.913512456 0.843300212 1 9.669510132 -4.93080031 21.02169628 0.867589179 4.378133762 0.029530874 0.197962294 2724.472099 876102.7482 0.050289448 26183.29618 1.17E-05 4.93080031 3.510544584 GSS(ph)PTPPCS(ph)PVQPSK ddPTM_K562_Paclitaxel_30min_R1 2 GSSPTPPCSPVQPSK 15 0 H0YBY0;E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3 H0YBY0 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 2 GS(0.019)S(0.949)PT(0.43)PPCS(0.596)PVQPS(0.006)K;GS(0.014)S(0.824)PT(0.163)PPCS(0.999)PVQPSK 154.81 0.00031202 31702000 6014.2 5164.1 9675.1 6062 5055.4 4390.9 4167.9 6169.4 3259 7512 TRUE FALSE 6098.417355 5727.933902 7232.501345 5673.210453 5744.031069 5169.564464 4958.737267 5645.270962 3572.041512 5981.050277 1.019623155 0.95768028 1.209236005 0.948530808 0.960371641 0.86432386 0.829074667 0.943859473 0.597226465 1 12.54618313 -6.997913052 1.506721903 0.836539246 1.048871149 0.372247126 0.117057287 0.411272738 1.910031937 0.045605724 0.050966275 1.00E-07 6.997913052 0.212331904 GSS(ph)PTPPCSPVQPSK ddPTM_K562_Paclitaxel_30min_R1 2 GSSPTPPCSPVQPSK 15 0 H0YBY0;E7EPX0;E7EVJ4;Q9NUL3-4;Q9NUL3-6;Q9NUL3-8;Q9NUL3-3;Q9NUL3-7;Q9NUL3-2;Q9NUL3 H0YBY0 STAU2 Double-stranded RNA-binding protein Staufen homolog 2 1 GS(0.013)S(0.751)PT(0.235)PPCS(0.001)PVQPSK;GS(0.003)S(0.985)PT(0.012)PPCSPVQPSK 209.56 1.44E-13 110104000 8715.4 8158.4 14634.7 10943.9 8982.1 7524.5 7738.8 11188.7 5954.6 12130.7 TRUE FALSE 8837.442489 9049.161702 10939.98899 10242.00724 10205.61409 8858.864426 9207.196901 10238.1501 6526.565936 9658.456681 0.914995302 0.936915907 1.132684998 1.060418613 1.056650604 0.917213248 0.953278273 1.060019259 0.675735902 1 13.23757696 -8.735031301 24.99999898 0.837867434 1.005123024 0.304721016 0.100380914 225.619194 213590.2252 0.066679038 0.025185998 1.84E-09 8.735031301 0.16725559 GSS(ph)S(ph)GPS(ph)S(ph)PARVS(ph)TTPR ddPTM_K562_Paclitaxel_30min_R1 1 GSSSGPSSPARVSTTPR 17 1 Q5JR59-4;Q5JR59-3;Q5JR59 Q5JR59-4 MTUS2 Microtubule-associated tumor suppressor candidate 2 5 GS(0.48)S(0.568)S(0.978)GPS(0.986)S(0.985)PARVS(0.397)T(0.33)T(0.275)PR 67.646 0.029148 8691700 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 GSSFQS(ph)GRDDTWR ddPTM_K562_Paclitaxel_30min_R1 1 GSSFQSGRDDTWR 13 1 Q96KP1 Q96KP1 EXOC2 Exocyst complex component 2 1 GS(0.002)S(0.079)FQS(0.883)GRDDT(0.035)WR 97.203 0.029497 155490000 2513.2 2043.5 3110.7 2539.7 2446.8 2263.2 2896.5 2893.9 2362.7 3205.4 TRUE FALSE 2548.392554 2266.616241 2325.365312 2376.815009 2780.095585 2664.546743 3446.095754 2648.045132 2589.647892 2552.137721 0.998532537 0.88812458 0.911144134 0.931303585 1.089320362 1.044045046 1.350278132 1.037579246 1.01469755 1 11.31749047 -6.775984828 4.608231842 1.103679996 0.926089837 0.380713464 0.097133078 0.196609897 10.25139092 0.03092599 0.037300558 1.68E-07 6.775984828 -0.177590159 GSSGCSEAGGAGHEEGRAS(ph)PLRR ddPTM_K562_Paclitaxel_30min_R1 3 GSSGCSEAGGAGHEEGRASPLRR 23 2 Q9C0C9 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 1 GSSGCSEAGGAGHEEGRAS(1)PLRR;GSSGCSEAGGAGHEEGRAS(1)PLRR;GSSGCSEAGGAGHEEGRAS(1)PLRR 69.612 0.0017107 19865400 4349.8 4247.91 4169.4 4683.68 4430.51 4256.81 4521.75 5022.86 2980.56 5555.58 TRUE FALSE 4410.71062 4711.711179 3116.783404 4383.289728 5034.020471 5011.695485 5379.728457 4596.136691 3266.856105 4423.349746 0.997142635 1.065190738 0.704620612 0.990943511 1.13805617 1.133009093 1.216211416 1.039062465 0.738547999 1 12.1109236 -4.900671324 13.14097041 1.010622258 0.725139231 0 0.156662983 2994738.865 7063502.58 0.041524867 24209305.31 1.26E-05 4.900671324 -0.285483027 GSSGS(ph)VDETLFALPAASEPVIR ddPTM_K562_Paclitaxel_30min_R1 1 GSSGSVDETLFALPAASEPVIR 22 0 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 1 GS(0.148)S(0.148)GS(0.704)VDETLFALPAASEPVIR 119.37 6.76E-06 6331500 697.79 583.09 802.42 929.88 746.54 560.88 628.12 795.69 636.25 844.04 TRUE FALSE 707.5612129 646.7537381 599.8391468 870.2416588 848.231387 660.3441929 747.302491 728.091168 697.3646553 672.0241847 1.052880579 0.962396522 0.892585655 1.294955864 1.262203662 0.982619685 1.112017258 1.083430008 1.037707677 1 9.392369343 -6.230583402 24.99806466 1.114961438 0.968598486 0.284749507 0.102322875 919.2798932 744756.6194 0.029132611 0.050452525 5.88E-07 6.230583402 -0.146362952 GSSLSSESS(ph)PVSSPATNHS(ph)SPASTPK ddPTM_K562_Paclitaxel_30min_R1 1 GSSLSSESSPVSSPATNHSSPASTPK 26 0 Q14687-3;Q14687 Q14687-3 GSE1 Genetic suppressor element 1 2 GS(0.006)S(0.007)LS(0.03)S(0.035)ES(0.154)S(0.621)PVS(0.029)S(0.117)PAT(0.048)NHS(0.465)S(0.306)PAS(0.092)T(0.089)PK 82.364 0.00018327 17823000 4855 4343.5 6947.6 5157.8 4782.8 3939.4 3741.8 5254.2 4466.4 5751.2 TRUE FALSE 4922.984979 4817.738019 5193.592453 4827.001793 5434.298333 4637.997278 4451.787016 4807.822914 4895.417676 4579.102283 1.075098278 1.052114087 1.134194463 1.054137142 1.186760635 1.01286169 0.972196457 1.049948793 1.069078036 1 12.16084908 GSSLSSESS(ph)PVSSPATNHSSPASTPK ddPTM_K562_Paclitaxel_30min_R1 2 GSSLSSESSPVSSPATNHSSPASTPK 26 0 Q14687-3;Q14687 Q14687-3 GSE1 Genetic suppressor element 1 1 GS(0.006)S(0.021)LS(0.073)S(0.062)ES(0.183)S(0.651)PVS(0.003)SPATNHSSPASTPK;GS(0.003)S(0.011)LS(0.055)S(0.046)ES(0.164)S(0.72)PVSSPATNHSSPASTPK 124.57 1.22E-10 33432000 9841.5 9477.2 14304.7 10543.4 8464 7102.8 7970.7 9600.9 11332.1 11692.6 TRUE FALSE 9979.311364 10511.95275 10693.30157 9867.193515 9616.940097 8362.381852 9483.098715 8785.243618 12420.59884 9309.641702 1.071932915 1.129146865 1.148626543 1.059889718 1.033008617 0.898249591 1.018631975 0.943671507 1.334165077 1 13.18450993 -6.478614164 3.985727623 1.028025195 1.117414309 0.087641087 0.110379908 0.511176972 17.07199668 0.032229858 0.047162172 3.32E-07 6.478614164 0.089389113 GSSLSSESSPVSSPATNHS(ph)SPASTPK ddPTM_K562_Paclitaxel_30min_R1 2 GSSLSSESSPVSSPATNHSSPASTPK 26 0 Q14687-3;Q14687 Q14687-3 GSE1 Genetic suppressor element 1 1 GSSLSSESSPVSSPAT(0.003)NHS(0.397)S(0.397)PAS(0.08)T(0.123)PK;GSSLSSESSPVSSPAT(0.007)NHS(0.29)S(0.29)PAS(0.169)T(0.244)PK 123.54 1.43E-10 72560000 4787.4 4587 7505.7 5697.1 4731.5 3902.7 4053.7 5689.2 4003 6591.1 TRUE FALSE 4854.43837 5087.824172 5610.793206 5331.713505 5376.010405 4594.789048 4822.868413 5205.866949 4387.506036 5247.830202 0.925037241 0.96951006 1.069164395 1.015984378 1.024425372 0.875559778 0.919021429 0.992003695 0.836060975 1 12.35750533 -7.249009707 24.95177811 0.923685171 1.003723512 0.307103167 0.057210729 928.8941949 1864697.196 0.018911018 0.018780778 5.64E-08 7.249009707 0.08003834 GSSPS(ph)HSATSVHTSV ddPTM_K562_Paclitaxel_30min_R1 2 GSSPSHSATSVHTSV 15 0 F8WA39;Q13613 F8WA39 MTMR1 Myotubularin-related protein 1 1 GS(0.025)S(0.017)PS(0.898)HS(0.036)AT(0.021)S(0.003)VHTSV;GS(0.025)S(0.017)PS(0.876)HS(0.037)AT(0.037)S(0.002)VHT(0.001)S(0.005)V 110.15 0.0021095 56743000 3473.7 3735.8 3552 3824.4 3699 2871.3 3029.7 3514.8 3216.9 3763.4 TRUE FALSE 3522.342517 4143.687278 2655.253669 3579.120101 4202.866425 3380.48474 3604.569759 3216.195801 3525.897618 2996.417014 1.175518127 1.382880707 0.886142902 1.194466619 1.402630677 1.128175659 1.202959982 1.073347196 1.176704578 1 11.5490227 -9.257368736 0.683528827 1.000810223 1.198020145 0.145169199 0.137498888 2.209753527 2.137488246 0.145219215 0.054495212 5.53E-10 9.257368736 0.197209922 GSSS(ph)QGPSQTSTPTDVTAIHL ddPTM_K562_Paclitaxel_30min_R1 1 GSSSQGPSQTSTPTDVTAIHL 21 0 Q5T8J1;P30281-4;P30281-2;P30281-3;P30281 Q5T8J1 CCND3 G1/S-specific cyclin-D3 1 GS(0.085)S(0.137)S(0.692)QGPS(0.005)QT(0.035)S(0.035)T(0.011)PTDVTAIHL 90.442 0.00060061 13653000 316.99 324.1 389.04 454.82 363.19 323.64 299.18 499.52 467.73 419.47 TRUE FALSE 321.428838 359.486334 290.8220404 425.6498809 412.6626269 381.0330099 355.9478432 457.0826581 512.6575564 333.9817837 0.96241428 1.076365094 0.870772164 1.27447035 1.235584235 1.140879618 1.065770232 1.368585595 1.534986581 1 8.383625606 -6.271593116 24.59098132 1.236318739 0.980501969 0.390285656 0.149583625 585.2351251 1417360.111 0.043431514 0.065285304 5.35E-07 6.271593116 -0.255816771 GSSS(ph)SSPEHSASSDSTKAPQTPR ddPTM_K562_Paclitaxel_30min_R1 1 GSSSSSPEHSASSDSTKAPQTPR 23 1 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 GS(0.095)S(0.095)S(0.41)S(0.324)S(0.076)PEHSASSDSTKAPQTPR 124.88 3.61E-08 13463000 799.85 475.18 964.73 683.7 561.87 619.3 572.12 615.18 704.58 815.48 TRUE FALSE 811.0503677 527.0617594 721.1719799 639.8505421 638.4062065 729.1241596 680.6767833 562.9166192 772.2580571 649.2847284 1.249144377 0.811757518 1.110717607 0.985469878 0.983245375 1.122965207 1.048348673 0.866979608 1.189398154 1 9.342707466 GSSSQGPSQTST(ph)PTDVTAIHL ddPTM_K562_Paclitaxel_30min_R1 1 GSSSQGPSQTSTPTDVTAIHL 21 0 Q5T8J1;P30281-4;P30281-2;P30281-3;P30281 Q5T8J1 CCND3 G1/S-specific cyclin-D3 1 GSSSQGPSQT(0.006)S(0.023)T(0.934)PT(0.036)DVT(0.001)AIHL 126.84 3.89E-07 27542000 927.45 887.37 1009.3 946.85 809.75 747.64 805.84 1140.9 893.61 1157.4 TRUE FALSE 940.4371614 984.2560575 754.4897321 886.1232789 920.0516592 880.2234566 958.7439332 1043.973424 979.4452333 921.5212447 1.020526837 1.068077446 0.81874372 0.961587466 0.998405261 0.955185202 1.040392654 1.132880473 1.062856922 1 9.847873616 -7.900556215 4.402856021 1.07577184 0.96908569 0.292855758 0.067426729 0.258200031 8.85509375 0.030403174 0.0199854 1.26E-08 7.900556215 -0.10668615 GSSSQGPSQTSTPT(ph)DVTAIHL ddPTM_K562_Paclitaxel_30min_R1 3 GSSSQGPSQTSTPTDVTAIHL 21 0 Q5T8J1;P30281-4;P30281-2;P30281-3;P30281 Q5T8J1 CCND3 G1/S-specific cyclin-D3 1 GSSSQGPSQT(0.002)S(0.014)T(0.245)PT(0.739)DVTAIHL;GSSSQGPSQT(0.002)S(0.013)T(0.006)PT(0.978)DVT(0.001)AIHL;GSSSQGPS(0.002)QT(0.027)S(0.072)T(0.24)PT(0.619)DVT(0.04)AIHL 137.68 2.05E-11 92332000 3348.53 3210.02 3694.5 3480.17 3294.73 3395.67 2853.06 3646.67 2928.03 3728.55 TRUE FALSE 3395.419751 3560.500839 2761.777782 3256.967473 3743.528006 3997.844397 3394.413241 3336.862622 3209.280364 2968.669463 1.143751365 1.199359135 0.93030828 1.097113543 1.261012064 1.346678856 1.143412321 1.124026323 1.081050081 1 11.53560075 -8.935230783 1.787163278 1.002375762 1.159912442 0.19554812 0.102071744 0.635684608 4.53746593 0.107934593 0.031031822 1.16E-09 8.935230783 0.157536679 GSSSS(ph)SPEHSASSDSTKAPQTPR ddPTM_K562_Paclitaxel_30min_R1 3 GSSSSSPEHSASSDSTKAPQTPR 23 1 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 GS(0.002)S(0.034)S(0.15)S(0.665)S(0.15)PEHSASSDSTKAPQTPR;GS(0.011)S(0.054)S(0.268)S(0.461)S(0.206)PEHSASSDSTKAPQTPR;GS(0.006)S(0.024)S(0.12)S(0.475)S(0.37)PEHS(0.003)ASSDSTKAPQTPR 166.43 5.74E-19 90987000 3255.81 2760.87 4979.4 3513.1 2588.18 2758.35 2596.88 2997.63 3934.7 3924 TRUE FALSE 3301.401385 3062.311123 3722.288886 3287.78549 2940.733934 3247.504643 3089.624423 2742.962621 4312.645516 3124.286646 1.056689657 0.980163305 1.191404409 1.052331576 0.941249721 1.039438762 0.988905556 0.877948451 1.380361665 1 11.60931111 -11.09158784 0.004309957 0.953706753 1.131650874 0 0.135014871 3629068.469 2884.847721 61140.21509 57989.58568 8.10E-12 11.09158784 0.17794412 GSSSSS(ph)PEHSASSDSTK ddPTM_K562_Paclitaxel_30min_R1 1 GSSSSSPEHSASSDSTK 17 0 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 GS(0.021)S(0.036)S(0.027)S(0.161)S(0.754)PEHS(0.001)ASSDSTK 103.77 0.0016237 1306700 581.26 568.21 1317.3 903.99 772.24 649.91 711.91 886.34 572.4 1124.4 TRUE FALSE 589.3994333 630.2490894 984.7313228 846.0121275 877.4321621 765.1624133 846.9912061 811.0398846 627.3815776 895.2466628 0.658365407 0.703994905 1.099955313 0.945004503 0.980101014 0.854694516 0.946098144 0.905940137 0.700791864 1 9.806141425 -5.626236448 8.078890169 0.925766862 0.670092503 0.508158262 0.097913384 0.17630863 12.04308378 0.025037054 0.066747551 2.36E-06 5.626236448 -0.255674359 GSSSSSSPPPPARPWS(ph)SASSGERPGGPR ddPTM_K562_Paclitaxel_30min_R1 1 GSSSSSSPPPPARPWSSASSGERPGGPR 28 2 J3KNZ9 J3KNZ9 FBRS 1 GSSSSSS(0.001)PPPPARPWS(0.628)S(0.123)AS(0.123)S(0.123)GERPGGPR 58.332 0.0031228 0 596.04 611.85 691.48 646.11 688.19 615.45 574.1 688.7 510.23 809.64 TRUE FALSE 604.3863989 678.6538521 516.9073219 604.6713965 781.9331292 724.5914162 683.032478 630.1906363 559.2398713 644.6349236 0.937563847 1.052772395 0.801860562 0.938005954 1.212985987 1.124033759 1.059564806 0.977593074 0.86752959 1 9.332338539 -5.227721282 20.62130235 1.006783813 0.937562465 0.02931541 0.113217254 5810.101982 3552686.919 0.030749484 2.983785342 5.92E-06 5.227721282 -0.069221348 GSSVDAPPRPCHT(ph)TPDSQFGTEHVLR ddPTM_K562_Paclitaxel_30min_R1 1 GSSVDAPPRPCHTTPDSQFGTEHVLR 26 1 Q9BSJ8;Q9BSJ8-2 Q9BSJ8 ESYT1 Extended synaptotagmin-1 1 GS(0.127)S(0.127)VDAPPRPCHT(0.619)T(0.127)PDSQFGTEHVLR 88.836 8.58E-05 15804000 1338.7 1272.3 1487.4 1342.1 1360.8 1361.4 1167.5 1808.6 1325.9 1415.3 TRUE FALSE 1357.44593 1411.214017 1111.887474 1256.023713 1546.163999 1602.825175 1389.02703 1654.948141 1453.258619 1126.861083 1.204625797 1.252340717 0.986712107 1.114621608 1.372098142 1.42238045 1.232651523 1.468635456 1.289651973 1 10.13809396 -6.756581972 24.99828634 1.323996009 1.136710935 0.228160264 0.137251927 151.2097735 778185.1997 0.039615488 0.049498483 1.75E-07 6.756581972 -0.187285074 GSSVDAPPRPCHTT(ph)PDSQFGTEHVLR ddPTM_K562_Paclitaxel_30min_R1 1 GSSVDAPPRPCHTTPDSQFGTEHVLR 26 1 Q9BSJ8;Q9BSJ8-2 Q9BSJ8 ESYT1 Extended synaptotagmin-1 1 GS(0.004)S(0.004)VDAPPRPCHT(0.4)T(0.587)PDS(0.005)QFGTEHVLR 89.462 8.42E-05 15154000 1405.8 1199.1 1528.1 1483.9 1780.7 1292.6 1170.7 1434.4 1211.7 1541 TRUE FALSE 1425.485537 1330.021793 1142.312256 1388.729296 2023.261487 1521.824461 1392.834214 1312.538767 1328.089199 1226.943354 1.161818541 1.084012386 0.931022815 1.131860971 1.649025997 1.240337996 1.135206616 1.069763133 1.082437257 1 10.26085293 -8.107144026 3.123078703 1.055840344 1.198811057 0.128263495 0.173084686 0.689943264 12.71814543 0.103788579 0.055614662 7.81E-09 8.107144026 0.142970713 GSTDNLMDDIER ddPTM_K562_Paclitaxel_30min_R1 4 GSTDNLMDDIER 12 0 P50990-2;P50990;P50990-3 P50990-2 CCT8 T-complex protein 1 subunit theta 0 ;;; 148.18 0.001175 23031700 3531.18 4049.8 4863.82 3809.16 4193.15 4051.17 4602.75 5186.62 3880.66 5856.06 FALSE TRUE 3580.627415 4491.97086 3635.888486 3564.857527 4764.328021 4769.588118 5476.097785 4745.984257 4253.414732 4662.591758 0.767947871 0.963406426 0.779799879 0.764565656 1.021819681 1.02294783 1.174475071 1.017885439 0.91224258 1 12.1869164 -6.774785333 24.10405768 1.033171097 0.826454719 0.611259344 0.080214474 104.2669496 188315.0845 0.025742047 0.029371005 1.68E-07 6.774785333 -0.206716378 GSTSSS(ph)PYVAASHT(ph)PPINGSDSILGTR ddPTM_K562_Paclitaxel_30min_R1 3 GSTSSSPYVAASHTPPINGSDSILGTR 27 0 Q99081;Q99081-3;B4DGI9;F5GY10;Q99081-4;Q99081-2 Q99081 TCF12 Transcription factor 12 2 GS(0.028)T(0.037)S(0.116)S(0.378)S(0.439)PY(0.002)VAAS(0.161)HT(0.837)PPINGS(0.001)DSILGTR;GS(0.039)T(0.039)S(0.118)S(0.369)S(0.431)PY(0.003)VAAS(0.14)HT(0.858)PPINGS(0.002)DS(0.001)ILGTR;GS(0.209)T(0.209)S(0.086)S(0.234)S(0.262)PY(0.005)VAAS(0.095)HT(0.868)PPINGS(0.016)DS(0.007)ILGT(0.01)R 73.113 0.00035481 46510000 2117.49 2115.02 2442.18 2064.21 1954.15 2074.78 2048.09 2360.84 2112.21 2580.95 TRUE FALSE 2147.141393 2345.945036 1825.621455 1931.82081 2220.338314 2442.713102 2436.704386 2160.271906 2315.097208 2054.950973 1.044862588 1.141606329 0.888401465 0.940081216 1.080482378 1.188696535 1.185772516 1.051252285 1.126594862 1 11.00488826 -6.971418815 9.727254821 1.120178942 1.005824856 0.274571266 0.08142727 0.459310268 148.9797676 0.026526922 0.029966015 1.07E-07 6.971418815 -0.114354086 GSTSSSPYVAASHT(ph)PPINGSDSILGTR ddPTM_K562_Paclitaxel_30min_R1 4 GSTSSSPYVAASHTPPINGSDSILGTR 27 0 Q99081;Q99081-3;B4DGI9;F5GY10;Q99081-4;Q99081-2 Q99081 TCF12 Transcription factor 12 1 GSTSSSPYVAAS(0.385)HT(0.615)PPINGSDSILGTR;GSTSSSPYVAAS(0.118)HT(0.881)PPINGSDSILGTR;GSTSSSPYVAAS(0.235)HT(0.765)PPINGSDSILGTR;GSTSSSPYVAAS(0.007)HT(0.993)PPINGSDSILGTR 132.7 3.23E-18 1039250000 5704.72 5567.73 6092.91 6169.57 5210.66 4940.44 5375.84 5793.23 5217.74 6904.2 TRUE FALSE 5784.603681 6175.63359 4554.679514 5773.881394 5920.440109 5816.557667 6395.877576 5301.058951 5718.92724 5497.12025 1.052297097 1.123430689 0.828557373 1.050346569 1.077007568 1.058109956 1.163496028 0.964333817 1.04034967 1 12.42446032 GSVGAVPSGT(ph)SPGGVATTAAAGSR ddPTM_K562_Paclitaxel_30min_R1 2 GSVGAVPSGTSPGGVATTAAAGSR 24 0 Q6ZNB6-2;Q6ZNB6 Q6ZNB6-2 NFXL1 NF-X1-type zinc finger protein NFXL1 1 GSVGAVPS(0.15)GT(0.848)S(0.002)PGGVATTAAAGSR;GSVGAVPS(0.008)GT(0.978)S(0.013)PGGVATTAAAGSR 252.37 1.12E-88 44339000 4673.7 4550.9 4822.4 4845.1 5015.9 3813.8 4149.3 4915.8 3417.2 4594.7 TRUE FALSE 4739.14622 5047.782652 3604.925477 4534.356972 5699.1505 4490.123882 4936.608014 4498.172107 3745.437328 3658.297618 1.295451249 1.379817385 0.985410662 1.239471865 1.55786956 1.227380697 1.349427665 1.229580689 1.023819743 1 11.83695673 -8.722756867 3.448869 0.998554217 1.288465326 0.398029568 0.135234328 0.247617233 5.668749322 0.122811386 0.036513731 1.89E-09 8.722756867 0.289911109 GSVGPVGPIGPAGIPGPMGLS(ph)GNK ddPTM_K562_Paclitaxel_30min_R1 1 GSVGPVGPIGPAGIPGPMGLSGNK 24 0 F8WDM8;Q17RW2-2;Q17RW2 F8WDM8 COL24A1 Collagen alpha-1(XXIV) chain 1 GSVGPVGPIGPAGIPGPMGLS(1)GNK 49.528 0.028048 12372000 628.42 784.82 628.7 756.2 756.86 496.18 553.9 558.73 754.82 757.11 TRUE FALSE 637.2198188 870.5093017 469.9769093 707.7007166 859.9571457 584.1705563 658.9996334 511.262399 827.3238336 602.8105664 1.057081369 1.444084345 0.779642786 1.174001844 1.426579416 0.969078163 1.093211815 0.848131117 1.372444147 1 9.235560895 GSVIS(ph)PTELEAPILVPHTAQR ddPTM_K562_Paclitaxel_30min_R1 1 GSVISPTELEAPILVPHTAQR 21 0 Q8N1B4-2;Q8N1B4 Q8N1B4-2 VPS52 Vacuolar protein sorting-associated protein 52 homolog 1 GS(0.223)VIS(0.598)PT(0.179)ELEAPILVPHTAQR 95.052 0.00046604 26929000 2000.6 1926.1 2398.8 2338.7 1873.6 1913.3 1845.8 2629.2 2007.7 2568.2 TRUE FALSE 2028.614572 2136.398112 1793.193272 2188.70625 2128.81604 2252.596891 2196.030914 2405.833049 2200.548556 2044.79943 0.992084868 1.044795925 0.876953136 1.070376985 1.041087947 1.101622417 1.07395908 1.176561874 1.076168412 1 10.99774362 -6.488427087 23.19203592 1.085082187 0.977802231 0.41331117 0.057343223 244.1999378 164388.9427 0.015962501 0.023655238 3.25E-07 6.488427087 -0.107279957 GSVPS(ph)PSPRPQALDATQVPSPLPLAQPST(ph)PPVR ddPTM_K562_Paclitaxel_30min_R1 1 GSVPSPSPRPQALDATQVPSPLPLAQPSTPPVR 33 1 O95402;B8ZZF3 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 2 GS(0.048)VPS(0.362)PS(0.098)PRPQALDAT(0.087)QVPS(0.406)PLPLAQPS(0.404)T(0.595)PPVR 52.166 0.012627 33196000 376 428.92 511.79 768.55 508 395.77 416.83 733.85 445.56 522.89 TRUE FALSE 381.2651601 475.7509361 382.5822848 719.2586429 577.1982005 465.9542526 495.9213165 671.504862 488.3580288 416.324731 0.915787922 1.142740031 0.918951617 1.727638522 1.386413435 1.11920868 1.191188703 1.612935317 1.173021904 1 8.701565451 -6.196763952 24.99997998 1.330877248 1.007517528 0.314540804 0.217558986 249.1715256 96315.2993 0.058317721 0.101009244 6.36E-07 6.196763952 -0.32335972 GSVPSPSPRPQALDATQVPSPLPLAQPST(ph)PPVR ddPTM_K562_Paclitaxel_30min_R1 1 GSVPSPSPRPQALDATQVPSPLPLAQPSTPPVR 33 1 O95402;B8ZZF3 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 GSVPSPSPRPQALDATQVPS(0.006)PLPLAQPS(0.337)T(0.656)PPVR 55.144 0.01206 18512000 1733.8 1742.6 1745.2 1605.6 1559.3 1405.4 1979.8 1889 1679.6 1990.4 TRUE FALSE 1758.078549 1932.862961 1304.602676 1502.624002 1771.703059 1654.627957 2355.456715 1728.517659 1840.933085 1584.755387 1.109369031 1.21966013 0.823220218 0.948174093 1.117966264 1.044090445 1.486321948 1.090715749 1.161651255 1 10.63004446 -7.587632167 24.99997017 1.202657016 1.040402302 0.165036729 0.153077772 100.5295821 38810.8876 0.059046304 0.045737073 2.58E-08 7.587632167 -0.162254714 GSYGS(ph)DAEEEEYR ddPTM_K562_Paclitaxel_30min_R1 2 GSYGSDAEEEEYR 13 0 Q9UDY2-7;Q9UDY2-4;A0A3B3IU51;A0A1B0GTW1;A0A3B3ITE1;A0A2R8YDH4;Q9UDY2-2;Q9UDY2-6;Q9UDY2-3;Q9UDY2;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 GSYGS(1)DAEEEEYR;GSYGS(1)DAEEEEYR 143.94 3.35E-05 97996000 1235.23 1260.37 1577.93 1456.15 1241.45 1327.12 1500.58 1628.23 790.75 1578.87 TRUE FALSE 1252.527031 1397.981459 1179.562056 1362.759056 1410.556508 1562.466098 1785.307221 1489.901698 866.7050707 1257.095427 0.996365911 1.112072662 0.9383234 1.084053785 1.12207592 1.242917653 1.420184325 1.185193794 0.6894505 1 10.29587845 -5.258947705 21.00549575 1.105486411 0.996365626 0.014397011 0.183632807 120.5799976 1015836.568 0.047647422 0.304846621 5.51E-06 5.258947705 -0.109120785 GSYGS(ph)DAEEEEYRQQLSEHSK ddPTM_K562_Paclitaxel_30min_R1 3 GSYGSDAEEEEYRQQLSEHSK 21 1 Q9UDY2-7;Q9UDY2-4;A0A3B3IU51;A0A1B0GTW1;A0A3B3ITE1;A0A2R8YDH4;Q9UDY2-2;Q9UDY2-6;Q9UDY2-3;Q9UDY2;A0A3B3IS03 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 GS(0.003)Y(0.001)GS(0.996)DAEEEEYRQQLSEHSK;GS(0.004)Y(0.051)GS(0.943)DAEEEEY(0.002)RQQLSEHSK;GS(0.004)Y(0.002)GS(0.994)DAEEEEY(0.001)RQQLSEHSK 91.883 0.00042143 403869000 5087.46 4449.3 8655.7 5332.88 4467.89 4073.63 3754.81 6071.3 5242.07 6629.5 TRUE FALSE 5158.700136 4935.089621 6470.461483 4990.852946 5076.49226 4796.031084 4467.265596 5555.505169 5745.594246 5278.404261 0.97732191 0.934958631 1.225836666 0.945523059 0.96174753 0.908613825 0.84632881 1.052497098 1.088509701 1 12.36588613 GT(ph)GQSDDSDIWDDTALIK ddPTM_K562_Paclitaxel_30min_R1 1 GTGQSDDSDIWDDTALIK 18 0 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 1 GT(0.685)GQS(0.311)DDS(0.004)DIWDDTALIK 147.35 5.17E-10 6410200 2640.2 2564.6 5764.3 3893.2 2600 2528.7 1877.2 3063.6 2629.2 3276.8 TRUE FALSE 2677.170946 2844.611701 4309.031173 3643.507577 2954.164018 2977.12944 2233.3889 2803.328058 2881.746408 2608.986361 1.026134512 1.090312983 1.65161123 1.396522278 1.132303358 1.141105789 0.856037016 1.074489349 1.104546367 1 11.34927369 -7.134844999 2.402023207 1.022347978 1.297735089 0.316597064 0.175032999 0.385955096 4.362667339 0.06974669 0.069941594 7.33E-08 7.134844999 0.275387111 GT(ph)LSTT(ph)GHSTNYVLS(ph)IELPTDMPQK ddPTM_K562_Paclitaxel_30min_R1 1 GTLSTTGHSTNYVLSIELPTDMPQK 25 0 Q8TD57 Q8TD57 DNAH3 "Dynein heavy chain 3, axonemal" 3 GT(0.773)LS(0.178)T(0.066)T(0.319)GHS(0.322)T(0.322)NY(0.037)VLS(0.978)IELPT(0.006)DMPQK 51.876 0.013065 31143000 603.32 585.88 700.14 730.29 559.19 593.7 580.88 660.85 637.48 827.2 TRUE FALSE 611.7683414 649.8483597 523.3809978 683.4524681 635.3611452 698.984359 691.0989476 604.7066676 698.7128023 658.6161859 0.928869278 0.986687503 0.794667682 1.037709796 0.964691058 1.06129241 1.049319714 0.918147292 1.060880096 1 9.363294157 -6.314593285 24.99999745 1.011232172 0.911735395 0.399290726 0.061397045 333.5812208 156893.2387 0.016813253 0.024938071 4.85E-07 6.314593285 -0.099496777 GT(ph)PVRGAITRGATVT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 GTPVRGAITRGATVTR 16 2 Q07666-3;Q07666;Q07666-2 Q07666-3 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 2 GT(0.777)PVRGAIT(0.221)RGAT(0.025)VT(0.976)R 60.55 0.028866 13525000 0 0 0 0 0 0 71.871 0 65.027 0 TRUE FALSE 0 0 0 0 0 0 85.50814706 0 71.2731339 0 0 GT(ph)QKMT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 GTQKMTR 7 1 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 2 GT(1)QKMT(1)R 83.377 0.024355 13015000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 GT(ph)S(ph)Y(ph)IEEDIQES(ph)ICK ddPTM_K562_Paclitaxel_30min_R1 2 GTSYIEEDIQESICK 15 0 H0YF13 H0YF13 CEP126 4 GT(1)S(1)Y(1)IEEDIQES(1)ICK;GT(1)S(1)Y(1)IEEDIQES(1)ICK 64.346 0.018687 102555000 0 0 0 0 0 67.493 0 0 0 0 TRUE FALSE 0 0 0 0 0 79.4619359 0 0 0 0 0 GTAAFS(ph)PSHPLLPLR ddPTM_K562_Paclitaxel_30min_R1 2 GTAAFSPSHPLLPLR 15 0 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 GT(0.001)AAFS(0.982)PS(0.017)HPLLPLR;GT(0.001)AAFS(0.817)PS(0.183)HPLLPLR 98.077 0.004473 19863800 3004.83 3132.59 3154.81 3199.7 2942.07 2949.33 3164.3 3391.3 2928.56 3769.7 TRUE FALSE 3046.906891 3474.61677 2358.339197 2994.485563 3342.829744 3472.352265 3764.709406 3103.187897 3209.861273 3001.433071 1.015150703 1.157652591 0.785737727 0.99768527 1.113744556 1.156898116 1.254303967 1.033902081 1.069442895 1 11.55143578 -6.750325923 6.161342638 1.116850381 0.985773834 0.215681834 0.106652922 0.234052948 33.13597321 0.03330141 0.041143268 1.78E-07 6.750325923 -0.131076547 GTADVTHDLQEMKEESR ddPTM_K562_Paclitaxel_30min_R1 1 GTADVTHDLQEMKEESR 17 1 P11166 P11166 SLC2A1 "Solute carrier family 2, facilitated glucose transporter member 1" 0 74.296 0.010576 7932000 1033.9 933.88 1266.6 964.81 991.84 730.08 981.69 1061.9 910.97 1035.2 FALSE TRUE 1048.37779 1035.844177 946.8311649 902.9314049 1126.9454 859.5494372 1167.960553 971.6849668 998.4727388 824.2256718 1.271954788 1.256748257 1.148752335 1.095490514 1.367277723 1.04285691 1.417039766 1.178906457 1.211406988 1 9.686895589 -9.531810016 1.995477713 1.000026754 1.221539344 0.272175282 0.108683877 7.537267428 26.62202453 0.098919212 0.027347793 2.94E-10 9.531810016 0.22151259 GTAYWYPPGSAARS(ph)PPYEGK ddPTM_K562_Paclitaxel_30min_R1 1 GTAYWYPPGSAARSPPYEGK 20 1 Q5TGY3 Q5TGY3 AHDC1 AT-hook DNA-binding motif-containing protein 1 1 GTAY(0.009)WY(0.106)PPGS(0.045)AARS(0.804)PPY(0.035)EGK 68.525 0.010679 8151400 1746.8 2011.2 2883.3 2077.6 1647.9 1673.8 1237.5 2247.1 2110.2 2275.1 TRUE FALSE 1771.260589 2230.789617 2155.375255 1944.352035 1872.371879 1970.624929 1472.309165 2056.194829 2312.894139 1811.433371 0.977822656 1.231505201 1.189872776 1.073377617 1.033641043 1.087881542 0.812786817 1.135120321 1.27683092 1 10.82291603 -6.429957815 6.144312718 1.053685068 1.142368577 0.066119099 0.12498382 0.625719182 34.00008909 0.036582692 0.0543721 3.72E-07 6.429957815 0.088683509 GTDTQTPAVLS(ph)PSK ddPTM_K562_Paclitaxel_30min_R1 2 GTDTQTPAVLSPSK 14 0 P46087-2;P46087;P46087-4 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 GTDTQT(0.002)PAVLS(0.951)PS(0.046)K;GTDTQTPAVLS(0.939)PS(0.061)K 179.14 3.29E-06 85635000 4966.1 4427 8142.1 6246.7 4765.2 4223 4720.9 6345.4 2376.9 7423.5 TRUE FALSE 5035.640722 4910.354831 6086.526155 5846.064621 5414.300916 4971.889756 5616.66613 5806.318663 2605.211865 5910.586625 0.851969701 0.830772839 1.029766847 0.989083655 0.916034441 0.841183807 0.950272196 0.982359118 0.44077044 1 12.52908561 GTEAPAVVT(ph)EEEDDDEETAPPVIAPRPDHTK ddPTM_K562_Paclitaxel_30min_R1 1 GTEAPAVVTEEEDDDEETAPPVIAPRPDHTK 31 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 GTEAPAVVT(0.998)EEEDDDEET(0.002)APPVIAPRPDHTK 107.36 3.31E-13 18264000 1687.5 1446.2 2656.6 1190.7 1444.3 862.72 1097.2 1598.2 1835.6 1928.5 TRUE FALSE 1711.130206 1604.101007 1985.908474 1114.333831 1641.038112 1015.711279 1305.387972 1462.422934 2011.917582 1535.470641 1.114401123 1.044696631 1.293354897 0.725727866 1.068752517 0.661498339 0.850154954 0.952426504 1.310293748 1 10.58446521 -6.253532145 24.98965434 0.926641419 1.140205444 0.224276485 0.179775113 927.2418483 2930405.401 0.049384236 0.0836311 5.58E-07 6.253532145 0.213564025 GTEFAESADAALQGDPALQDAGDS(ph)SRKEYFI ddPTM_K562_Paclitaxel_30min_R1 2 GTEFAESADAALQGDPALQDAGDSSRKEYFI 31 2 P04921-2;P04921-3;P04921 P04921-2 GYPC Glycophorin-C 1 GTEFAESADAALQGDPALQDAGDS(0.455)S(0.455)RKEY(0.09)FI;GTEFAESADAALQGDPALQDAGDS(0.484)S(0.484)RKEY(0.033)FI 75.661 0.00031114 96025000 2071.49 1893.25 2403.37 2106.21 1693.89 1491.55 1726.35 2691.4 2413.46 2930.17 TRUE FALSE 2100.497251 2099.961438 1796.609519 1971.127118 1924.626496 1756.05545 2053.9159 2462.748771 2645.283617 2332.999746 0.900341826 0.900112159 0.770085604 0.844889555 0.824957868 0.752702804 0.880375535 1.055614676 1.133855081 1 11.18797043 -8.222556477 3.682909621 1.075703014 0.831937506 0.785692417 0.054013864 0.100801175 2.894210523 0.029865902 0.015215409 5.99E-09 8.222556477 -0.243765508 GTENGVNGTLTSNVADS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 GTENGVNGTLTSNVADSPR 19 0 G3XAN4;Q15629-2;Q15629 G3XAN4 TRAM1 Translocating chain-associated membrane protein 1 1 GTENGVNGTLTSNVADS(1)PR;GTENGVNGTLTSNVADS(1)PR;GTENGVNGTLTSNVADS(1)PR 410.55 0 259306000 8249.4 8319.5 9353.7 9524.2 8822.7 8589.6 8243.8 9829.7 7682.1 10444.6 TRUE FALSE 8364.917052 9227.851145 6992.24275 8913.360441 10024.50111 10112.84496 9808.018014 8994.60563 8420.00003 8315.984787 1.005884121 1.10965224 0.84081957 1.071834626 1.205449669 1.216073047 1.179417503 1.081604387 1.012507868 1 13.0216714 -5.249379312 22.08853012 1.085852357 1.005883876 0.038635157 0.106577422 1445.987368 2648126.217 0.029032727 0.410870199 5.63E-06 5.249379312 -0.079968482 GTEPIVVDPFDPRGS(ph)GSLLR ddPTM_K562_Paclitaxel_30min_R1 3 GTEPIVVDPFDPRGSGSLLR 20 1 P22681;A0A1B0GW38;A0A0U1RQX8;A0A0U1RR39 P22681 CBL E3 ubiquitin-protein ligase CBL 1 GTEPIVVDPFDPRGS(0.828)GS(0.172)LLR;GTEPIVVDPFDPRGS(0.862)GS(0.138)LLR;GTEPIVVDPFDPRGS(0.781)GS(0.219)LLR 109.72 0.0001706 14437900 3918.92 3697.5 4284.09 4255.64 4022.96 3999.09 4418.68 4587.29 3304.79 4941.7 TRUE FALSE 3973.796971 4101.205554 3202.518495 3982.702298 4570.955261 4708.272461 5257.101463 4197.571082 3622.229846 3934.578827 1.009967558 1.042349317 0.813941882 1.012230908 1.161739404 1.196639505 1.336128133 1.066841272 0.920614379 1 11.9419935 -6.623258232 4.937648551 1.131517798 0.95660151 0.25758586 0.119958607 0.275804766 11.04371901 0.038078847 0.04962245 2.38E-07 6.623258232 -0.174916288 GTEPIVVDPFDPRGSGS(ph)LLR ddPTM_K562_Paclitaxel_30min_R1 1 GTEPIVVDPFDPRGSGSLLR 20 1 P22681;A0A1B0GW38;A0A0U1RQX8;A0A0U1RR39 P22681 CBL E3 ubiquitin-protein ligase CBL 1 GTEPIVVDPFDPRGS(0.369)GS(0.631)LLR 113.33 8.68E-05 7501800 1210.3 1464.3 1615 1379.8 1579.3 1332.6 1392.1 1860.3 1318.7 1953 TRUE FALSE 1227.247934 1624.177226 1207.273276 1291.305804 1794.427398 1568.917899 1656.243708 1702.255903 1445.367027 1554.977528 0.789238373 1.044502057 0.776392748 0.83043374 1.15398928 1.008964999 1.065123886 1.09471415 0.929509913 1 10.60267802 -6.746898462 24.9993632 1.046285494 0.867328219 0.501624734 0.088651641 201.3028538 346086.9238 0.025490696 0.032760946 1.79E-07 6.746898462 -0.178957275 GTEPS(ph)PGGT(ph)PQPSRPVS(ph)PAGPPEGVPEEAQPPR ddPTM_K562_Paclitaxel_30min_R1 1 GTEPSPGGTPQPSRPVSPAGPPEGVPEEAQPPR 33 1 I3L1Q2;Q8WUZ0;Q8WUZ0-2 I3L1Q2 BCL7C B-cell CLL/lymphoma 7 protein family member C 3 GT(0.012)EPS(0.947)PGGT(0.957)PQPS(0.445)RPVS(0.638)PAGPPEGVPEEAQPPR 72.728 9.40E-05 40513000 561.28 451.38 439.72 563.77 515.83 574.16 553.57 592.25 409.19 523.37 TRUE FALSE 569.1396517 500.6631949 328.7072476 527.6123155 586.0947791 675.9792144 658.6070177 541.9346658 448.4945278 416.7069067 1.36580326 1.201475634 0.788821213 1.266147278 1.406491636 1.622193449 1.580504203 1.300517599 1.076282924 1 8.702889202 -5.219839237 20.045486 1.271624334 1.365806517 0.012945988 0.242346289 11478.22815 5529371.395 0.066569881 12.29212529 6.03E-06 5.219839237 0.094182183 GTEPS(ph)PGGTPQPS(ph)RPVSPAGPPEGVPEEAQPPR ddPTM_K562_Paclitaxel_30min_R1 1 GTEPSPGGTPQPSRPVSPAGPPEGVPEEAQPPR 33 1 I3L1Q2;Q8WUZ0;Q8WUZ0-2 I3L1Q2 BCL7C B-cell CLL/lymphoma 7 protein family member C 2 GT(0.002)EPS(0.5)PGGT(0.5)PQPS(0.826)RPVS(0.173)PAGPPEGVPEEAQPPR 99.396 5.52E-12 38783000 1108.6 1421.4 1420.7 1524.2 1345.8 1275.2 1168.2 1856.1 1118.9 1647.4 TRUE FALSE 1124.12382 1576.593259 1062.026714 1426.444634 1529.120745 1501.338815 1389.859852 1698.41272 1226.375344 1311.658976 0.857024456 1.201984119 0.809682039 1.087511816 1.165791393 1.144610637 1.059619823 1.294858459 0.934980332 1 10.35717696 -6.498515258 24.41570668 1.115998839 0.975437463 0.183186416 0.133233108 895.5979024 897517.2907 0.034991249 0.051575379 3.17E-07 6.498515258 -0.140561376 GTEPS(ph)PGGTPQPSRPVS(ph)PAGPPEGVPEEAQPPR ddPTM_K562_Paclitaxel_30min_R1 1 GTEPSPGGTPQPSRPVSPAGPPEGVPEEAQPPR 33 1 I3L1Q2;Q8WUZ0;Q8WUZ0-2 I3L1Q2 BCL7C B-cell CLL/lymphoma 7 protein family member C 2 GT(0.012)EPS(0.74)PGGT(0.252)PQPS(0.3)RPVS(0.697)PAGPPEGVPEEAQPPR 52.814 0.0037752 44958000 1468.7 1846.3 2097.5 1671.8 1452.4 1669.4 1806.8 1717.6 1329.3 2039 TRUE FALSE 1489.266331 2047.885278 1567.960183 1564.578231 1650.241469 1965.44465 2149.630868 1571.679159 1456.985204 1623.450681 0.917346211 1.261439785 0.965819413 0.963736225 1.016502373 1.210658675 1.324112209 0.968110197 0.897461944 1 10.66484784 -8.49428443 24.98308335 0.943415866 1.096043703 0.192928727 0.130592679 1085.203774 948155.7458 0.074477812 0.035660406 3.20E-09 8.49428443 0.152627837 GTEPSPGGTPQPSRPVS(ph)PAGPPEGVPEEAQPPR ddPTM_K562_Paclitaxel_30min_R1 3 GTEPSPGGTPQPSRPVSPAGPPEGVPEEAQPPR 33 1 I3L1Q2;Q8WUZ0;Q8WUZ0-2 I3L1Q2 BCL7C B-cell CLL/lymphoma 7 protein family member C 1 GTEPS(0.004)PGGT(0.167)PQPS(0.126)RPVS(0.703)PAGPPEGVPEEAQPPR;GTEPSPGGT(0.001)PQPS(0.004)RPVS(0.995)PAGPPEGVPEEAQPPR;GTEPS(0.004)PGGT(0.003)PQPS(0.004)RPVS(0.989)PAGPPEGVPEEAQPPR 78.755 8.37E-06 571315000 2613.28 2192.3 2380.01 2410.96 2460.1 2157.42 2348.68 2470.95 2137.22 2495.41 TRUE FALSE 2649.873983 2431.662728 1779.14704 2256.331817 2795.20727 2540.008145 2794.329769 2261.027374 2342.50953 1986.844072 1.333710088 1.223882016 0.895463849 1.135636081 1.406857895 1.27841343 1.40641624 1.137999406 1.179010252 1 10.95626294 -3.465772658 16.697804 1.207689908 47.09461266 0 0.158680932 0 0 0.037935918 0 0.000342159 3.465772658 45.88692275 GTEPSTDGET(ph)S(ph)EAESNYSVSEHHDTILR ddPTM_K562_Paclitaxel_30min_R1 1 GTEPSTDGETSEAESNYSVSEHHDTILR 28 0 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 2 GTEPS(0.066)T(0.263)DGET(0.829)S(0.829)EAES(0.011)NYSVSEHHDTILR 97.124 4.61E-07 10389000 671.82 743.36 789.17 686.31 451.66 683.69 543.65 762.48 477.68 586.71 TRUE FALSE 681.2275527 824.5225587 589.9342732 642.2931484 513.1837387 804.932822 646.8047495 697.7025647 523.5632983 467.1381799 1.458299882 1.765050673 1.262868887 1.374953228 1.098569461 1.723115037 1.384611186 1.493567845 1.120788925 1 8.867705553 -13.66312774 0.153685189 5.29E-13 1.560930893 0.323582525 0.199463749 105.5605843 1.393271308 34.02198779 1.026100265 2.17E-14 13.66312774 1.560930893 GTEPSTDGET(ph)SEAESNYSVSEHHDTILR ddPTM_K562_Paclitaxel_30min_R1 1 GTEPSTDGETSEAESNYSVSEHHDTILR 28 0 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 GTEPS(0.001)T(0.002)DGET(0.85)S(0.147)EAESNYSVSEHHDTILR 142.25 3.08E-24 51614000 726.63 766.59 987.69 990.13 707.05 603.56 634.04 862 764.94 626.66 TRUE FALSE 736.8050618 850.2888886 738.3354439 926.6274935 803.3621805 710.5928916 754.3457801 788.7677196 838.4159048 498.946348 1.476722026 1.704168979 1.479789254 1.857168606 1.610117368 1.424186978 1.511877546 1.580866806 1.680372866 1 8.96274088 -7.16112967 6.204925054 1.480766072 1.636542446 0.166961601 0.197177542 0.512200953 26.65853065 0.062494077 0.062551293 6.90E-08 7.16112967 0.155776374 GTGQS(ph)DDSDIWDDTALIK ddPTM_K562_Paclitaxel_30min_R1 1 GTGQSDDSDIWDDTALIK 18 0 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 1 GT(0.01)GQS(0.907)DDS(0.083)DIWDDTALIK 145.88 3.03E-10 90091000 623.73 672.02 1100.7 914.65 644.71 640.64 472.32 652.93 724.27 965.88 TRUE FALSE 632.4641444 745.3934162 822.8146717 855.9884428 732.530417 754.248509 561.9402543 597.459521 793.8393696 769.0331258 0.822414696 0.969260479 1.069933978 1.113070964 0.952534283 0.980775059 0.730710077 0.77689699 1.032256405 1 9.586901933 -7.561496605 24.96853761 0.864855023 0.993360986 0.150678397 0.111212886 248.3956228 160599.2264 0.043612992 0.033782541 2.74E-08 7.561496605 0.128505963 GTGQSDDSDIWDDT(ph)ALIK ddPTM_K562_Paclitaxel_30min_R1 1 GTGQSDDSDIWDDTALIK 18 0 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 1 GTGQSDDS(0.027)DIWDDT(0.972)ALIK 144.1 5.72E-10 72431000 754.98 625.37 1381.5 819.18 686.22 637.79 639.25 899.24 723.75 968.18 TRUE FALSE 765.5520493 693.6500115 1032.723239 766.6414613 779.6947818 750.8931015 760.5443504 822.8439491 793.2694213 770.8643846 0.993108599 0.899834037 1.3396951 0.994521834 1.011455189 0.974092352 0.986612387 1.067430232 1.029064823 1 9.590333264 GTHHSQNPSPGS(ph)SSPRPSVVGR ddPTM_K562_Paclitaxel_30min_R1 2 GTHHSQNPSPGSSSPRPSVVGR 22 1 J3KTD2;J3KT00;A0A1W2PQI7;A0A1W2PPP3;Q86VV8-2;Q86VV8-4;Q86VV8-3;Q86VV8 J3KTD2 RTTN Rotatin 1 GTHHSQNPS(0.001)PGS(0.294)S(0.294)S(0.294)PRPS(0.117)VVGR;GTHHSQNPSPGS(0.307)S(0.307)S(0.307)PRPS(0.077)VVGR 54.875 0.019277 13651200 2808.4 2949.3 2977.2 2711.1 2474.48 2900.4 2475.64 3113.6 2279.6 3228.9 TRUE FALSE 2847.726265 3271.314548 2225.569038 2537.22218 2811.546069 3414.745216 2945.379766 2849.080246 2498.565766 2570.848408 1.107699021 1.272464972 0.865694388 0.986920183 1.09362577 1.328256153 1.145683953 1.108225688 0.97188374 1 11.32802883 -8.755249186 21.83373 0.985941815 1.113945276 0.147432438 0.12276349 58.18802658 205272.5614 0.095210154 0.033645068 1.76E-09 8.755249186 0.128003461 GTLDEEDEEADS(ph)DTDDIDHR ddPTM_K562_Paclitaxel_30min_R1 1 GTLDEEDEEADSDTDDIDHR 20 0 Q9HCN4-3;Q9HCN4-2;Q9HCN4-4;Q9HCN4;Q9HCN4-5 Q9HCN4-3 GPN1 GPN-loop GTPase 1 1 GTLDEEDEEADS(0.999)DT(0.001)DDIDHR 167.36 6.95E-13 103410000 3741.6 3171.6 4038.5 3580.6 3148.9 3033 3042.3 3631.2 2186.9 4042 TRUE FALSE 3793.993944 3517.886014 3018.930727 3350.956342 3577.833491 3570.859965 3619.560543 3322.706895 2396.961516 3218.238181 1.178904025 1.093109278 0.93806939 1.041239384 1.111736699 1.109569822 1.124702505 1.032461461 0.744805506 1 11.65205539 -8.591940781 7.636039161 0.874366484 1.080124542 0.50806905 0.082512282 0.196156502 18.46321372 0.056220885 0.020980113 2.56E-09 8.591940781 0.205758059 GTLDEEDEEADSDT(ph)DDIDHR ddPTM_K562_Paclitaxel_30min_R1 1 GTLDEEDEEADSDTDDIDHR 20 0 Q9HCN4-3;Q9HCN4-2;Q9HCN4-4;Q9HCN4;Q9HCN4-5 Q9HCN4-3 GPN1 GPN-loop GTPase 1 1 GTLDEEDEEADS(0.344)DT(0.656)DDIDHR 131.77 1.49E-09 118480000 2284.9 2228.6 2668.9 2389.3 2075.6 1900.9 2074.9 2882.6 1593.5 3010.1 TRUE FALSE 2316.89565 2471.926085 1995.103186 2236.060992 2358.33186 2237.997925 2468.601443 2637.705137 1746.562795 2396.639968 0.966726618 1.031413194 0.832458447 0.93299829 0.984015911 0.933806477 1.030025985 1.100584641 0.728754764 1 11.22679748 -6.752221842 24.22419738 0.969799022 0.93961866 0.008394195 0.100961578 778.6941854 2046435.687 0.029616794 0.037656741 1.77E-07 6.752221842 -0.030180361 GTLTLCPYHSDR ddPTM_K562_Paclitaxel_30min_R1 1 GTLTLCPYHSDR 12 0 Q13200;Q13200-3;Q13200-2 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 0 127.52 0.0025551 12608000 3213.1 3302.3 4182.8 3339.1 3405.7 2927.3 3935 4127.8 3282 4767.2 FALSE TRUE 3258.093313 3662.856282 3126.800408 3124.945071 3869.613999 3446.415554 4681.645708 3777.117625 3597.250764 3795.642023 0.858377395 0.965016263 0.823786961 0.823298154 1.01948866 0.90799278 1.233426566 0.995119561 0.947731831 1 11.89012822 -6.773781288 24.77663644 1.022390896 0.871445689 0.407177333 0.088298493 208.6234766 418814.4545 0.027986598 0.031961515 1.68E-07 6.773781288 -0.150945207 GTNTS(ph)SPYDAGADYLR ddPTM_K562_Paclitaxel_30min_R1 1 GTNTSSPYDAGADYLR 16 0 Q9UJJ2;Q8ND82 Q9UJJ2 ZNF280C Zinc finger protein 280C 1 GTNTS(0.5)S(0.5)PYDAGADYLR 257.72 2.91E-78 25190000 1512.5 1482.7 1525.8 1678.2 1297.2 1323.9 1286.6 1697.7 1212.8 1703.8 TRUE FALSE 1533.679666 1644.5862 1140.592919 1570.567763 1473.900602 1558.675077 1530.725633 1553.469788 1329.294859 1356.564625 1.130561448 1.212316885 0.840795122 1.157753737 1.086494941 1.148986969 1.128383864 1.145149859 0.979897924 1 10.40574206 -11.43705533 3.447923459 0.998919922 1.094438342 0.068603626 0.101698607 76120639.76 50014119.36 716839.3741 0.024794047 3.66E-12 11.43705533 0.09551842 GTNTSSPYDAGADY(ph)LR ddPTM_K562_Paclitaxel_30min_R1 1 GTNTSSPYDAGADYLR 16 0 Q9UJJ2;Q8ND82 Q9UJJ2 ZNF280C Zinc finger protein 280C 1 GT(0.001)NT(0.002)S(0.01)S(0.029)PY(0.457)DAGADY(0.502)LR 85.672 0.026913 27987000 2057.3 2038.8 2429.3 2248.4 2176.1 2138 2575.1 2676.4 2313.4 2649.9 TRUE FALSE 2086.108547 2261.403079 1815.99317 2104.197687 2472.521662 2517.144281 3063.711782 2449.023114 2535.612407 2109.848925 0.98874783 1.071831756 0.860721897 0.997321496 1.171895121 1.193044796 1.452100075 1.160757571 1.201798089 1 11.04292398 -6.815830366 3.264892866 1.223676599 0.974434743 0.461355216 0.114138251 0.204667248 4.438390396 0.03657182 0.043908156 1.53E-07 6.815830366 -0.249241856 GTPGS(ph)PSGTQEPR ddPTM_K562_Paclitaxel_30min_R1 1 GTPGSPSGTQEPR 13 0 Q5SXM2 Q5SXM2 SNAPC4 snRNA-activating protein complex subunit 4 1 GT(0.001)PGS(0.39)PS(0.22)GT(0.39)QEPR 109.83 0.0047533 3369900 1193.1 1013.6 1356.5 1089.3 1090.7 1041.2 1068.8 1259.7 1007 1290.9 TRUE FALSE 1209.807081 1124.268276 1014.034798 1019.437174 1239.271806 1225.842201 1271.59922 1152.680622 1103.726849 1027.813871 1.177068256 1.093844233 0.986593805 0.991849986 1.20573563 1.192669446 1.237188226 1.121487707 1.073858682 1 10.00536331 -5.253719217 22.64503281 1.107662751 1.177068352 0.060481925 0.086491403 975.3893936 2860764.291 0.023763304 0.234145386 5.58E-06 5.253719217 0.069405601 GTPLGTPAT(ph)SPPPAPLCHSDDYVHISLPQATVTPPR ddPTM_K562_Paclitaxel_30min_R1 1 GTPLGTPATSPPPAPLCHSDDYVHISLPQATVTPPR 36 0 A0A2R8YFV7;A0A2R8Y5N2;A0A2R8Y5S3;Q92574-2;Q92574;A0A2R8Y6W1;Q59IT9 A0A2R8YFV7 TSC1 Hamartin 1 GT(0.001)PLGT(0.012)PAT(0.443)S(0.4)PPPAPLCHS(0.109)DDY(0.034)VHIS(0.001)LPQATVTPPR 57.533 0.00067653 9369200 745.63 884.1 1035.9 816.69 801.29 764.89 908.22 926.57 472.15 923.45 TRUE FALSE 756.0711205 980.6290278 774.3742332 764.3111588 910.439264 900.5325019 1080.550004 847.852095 517.5021171 735.2503831 1.028317887 1.333734807 1.053211601 1.039525006 1.23827105 1.224797052 1.469635418 1.153147437 0.703844743 1 9.522091821 -11.12765062 7.370396312 0.999999944 1.15428757 0.037184843 0.196424435 1.87E-07 2.26E-08 0.192504503 0.046689182 7.45E-12 11.12765062 0.154287626 GTPPLTPS(ph)DSPQTR ddPTM_K562_Paclitaxel_30min_R1 1 GTPPLTPSDSPQTR 14 0 Q6NZY4-2;Q6NZY4 Q6NZY4-2 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 GTPPLT(0.005)PS(0.644)DS(0.344)PQT(0.007)R 101.32 0.003077 0 412.17 307.67 526.18 473.74 407.55 419.17 289.93 262.84 451.25 492.21 TRUE FALSE 417.9416517 341.2624511 393.3393513 443.3564368 463.0652099 493.5039141 344.942704 240.5101014 494.5945787 391.8973318 1.066456997 0.870795546 1.003679585 1.131307618 1.181598271 1.25926837 0.880186406 0.613706912 1.262051406 1 8.61433194 -7.812198312 24.9991796 0.9067947 1.078487274 0.129519052 0.17789987 197.7758827 97404.2326 0.075722218 0.051051979 1.54E-08 7.812198312 0.171692574 GTPPLTPSDS(ph)PQTR ddPTM_K562_Paclitaxel_30min_R1 2 GTPPLTPSDSPQTR 14 0 Q6NZY4-2;Q6NZY4 Q6NZY4-2 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 GTPPLTPS(0.003)DS(0.996)PQT(0.001)R;GTPPLTPS(0.002)DS(0.997)PQT(0.001)R 250.52 7.13E-59 51852000 1630.05 1863.09 2207.86 1800.13 1618.01 1784.78 1960.86 1827.18 1852.4 1763.59 TRUE FALSE 1652.875729 2066.508467 1650.458437 1684.677719 1838.410355 2101.285673 2332.922949 1671.949654 2030.331297 1404.16939 1.177119898 1.47169457 1.175398387 1.199768155 1.309251126 1.496461672 1.661425584 1.190703676 1.445930463 1 10.45550127 -5.213527229 20.26338638 1.340153368 1.177112319 0.052854785 0.184928827 8214.887282 3473327.947 0.045861334 16.06448793 6.12E-06 5.213527229 -0.163041049 GTPSQS(ph)PVVGR ddPTM_K562_Paclitaxel_30min_R1 5 GTPSQSPVVGR 11 0 C9J2I0;B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 C9J2I0 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 1 GT(0.001)PS(0.011)QS(0.988)PVVGR;GT(0.005)PS(0.122)QS(0.873)PVVGR;GTPS(0.003)QS(0.997)PVVGR;GT(0.038)PS(0.057)QS(0.905)PVVGR;GTPS(0.05)QS(0.949)PVVGR 135.91 0.00079329 801636000 7795.61 7561.8 8447.5 8614.5 7372.4 8163.6 7874.3 8576.07 8118.8 8109.9 TRUE FALSE 7904.772592 8387.422896 6314.824148 8062.004527 8376.645696 9611.299837 9368.407318 7847.479323 8898.647016 6457.097928 1.224198964 1.298946212 0.977966297 1.248549212 1.297277165 1.488485995 1.450869636 1.215326051 1.37811864 1 12.65667019 -6.650786214 3.699055686 1.33275278 1.172155974 0.126582661 0.14953264 0.389036575 10.13705017 0.044997998 0.058994885 2.23E-07 6.650786214 -0.160596807 GTPVRGAIT(ph)RGATVT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 GTPVRGAITRGATVTR 16 2 Q07666-3;Q07666;Q07666-2 Q07666-3 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 2 GT(0.069)PVRGAIT(0.93)RGAT(0.003)VT(0.998)R 70.114 0.018984 17853000 203.57 0 306.36 167.74 47.665 114.68 153.58 140.95 0 0 TRUE FALSE 206.4206081 0 229.015629 156.9819072 54.15777998 135.0168878 182.7210033 128.9754177 0 0 0 GTQEVAPPTPLT(ph)PTSHTANTSPRPVSGMER ddPTM_K562_Paclitaxel_30min_R1 1 GTQEVAPPTPLTPTSHTANTSPRPVSGMER 30 1 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 GTQEVAPPT(0.03)PLT(0.408)PT(0.408)S(0.123)HT(0.004)ANT(0.004)S(0.004)PRPVS(0.019)GMER 56.986 0.0025563 38969000 1913 1603.8 1655 1812.1 2073.4 1831.9 1842.8 1795.5 1235.1 1997.4 TRUE FALSE 1939.787902 1778.908308 1237.174781 1695.880017 2355.832183 2156.761744 2192.46168 1642.961068 1353.736874 1590.328784 1.219740171 1.118578954 0.777936483 1.066370699 1.481349144 1.356173494 1.378621643 1.033095222 0.851230819 1 10.63510934 -8.513073695 19.97248042 0.931130108 1.193158625 0.265783966 0.187057324 51.50882096 104942.1765 0.129072918 0.055157282 3.07E-09 8.513073695 0.262028518 GTQEVAPPTPLTPT(ph)SHTANTSPRPVSGMER ddPTM_K562_Paclitaxel_30min_R1 1 GTQEVAPPTPLTPTSHTANTSPRPVSGMER 30 1 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 GTQEVAPPTPLT(0.001)PT(0.194)S(0.194)HT(0.194)ANT(0.194)S(0.194)PRPVS(0.027)GMER 59.275 0.0090788 175650000 1602.2 1865.9 1849 1950.5 2114 1932.9 2110.3 1992.9 1426.4 1886.7 TRUE FALSE 1624.635743 2069.625272 1382.197082 1825.40366 2401.96259 2275.672676 2510.718408 1823.590706 1563.412093 1502.189504 1.081511846 1.377739137 0.920121648 1.215162038 1.598974419 1.514903858 1.671372621 1.213955164 1.04075557 1 10.55285111 -5.248925035 22.96020083 1.306045093 1.0815114 0.051222491 0.244489908 2040.864223 3744180.213 0.064933848 1.006823426 5.64E-06 5.248925035 -0.224533693 GTQEVAPPTPLTPTSHT(ph)ANTSPRPVSGMER ddPTM_K562_Paclitaxel_30min_R1 1 GTQEVAPPTPLTPTSHTANTSPRPVSGMER 30 1 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 GTQEVAPPTPLT(0.001)PT(0.071)S(0.071)HT(0.283)ANT(0.283)S(0.283)PRPVS(0.005)GMER 66.98 0.0024497 207920000 2941.8 2744.5 3519.4 3190.7 3120.9 3248.1 3385.5 3594.7 2609.8 3590.2 TRUE FALSE 2982.994276 3044.153791 2630.883943 2986.062783 3546.019417 3824.104929 4027.880952 3289.307798 2860.482951 2858.515269 1.043546735 1.064942288 0.920367287 1.044620197 1.240510924 1.337794124 1.409081489 1.150704995 1.000688358 1 11.48105028 -6.6996948 5.384780605 1.215675922 1.011203836 0.29187712 0.127481086 0.23725979 13.48869514 0.040376669 0.051794227 2.00E-07 6.6996948 -0.204472086 GTQEVAPPTPLTPTSHTANTSPRPVS(ph)GMER ddPTM_K562_Paclitaxel_30min_R1 1 GTQEVAPPTPLTPTSHTANTSPRPVSGMER 30 1 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 GTQEVAPPTPLT(0.001)PT(0.063)S(0.063)HT(0.063)ANT(0.244)S(0.244)PRPVS(0.321)GMER 60.814 0.00079245 7983800 1102.6 790.9 996.53 861.11 947.41 706.76 757 949.93 844.67 1227.3 TRUE FALSE 1118.039802 877.2531367 744.9436766 805.8822588 1076.463282 832.0939626 900.6367982 869.2275172 925.8043276 977.1755863 1.144154456 0.897743608 0.762343725 0.824705682 1.101606811 0.851529627 0.921673454 0.88953053 0.947428835 1 9.93247401 GTQGPEQQHLLITAPSS(ph)S(ph)SSSLESSASALDR ddPTM_K562_Paclitaxel_30min_R1 1 GTQGPEQQHLLITAPSSSSSSLESSASALDR 31 0 P20333 P20333 TNFRSF1B "Tumor necrosis factor receptor superfamily member 1B;Tumor necrosis factor receptor superfamily member 1b, membrane form;Tumor necrosis factor-binding protein 2" 2 GTQGPEQQHLLIT(0.002)APS(0.217)S(0.302)S(0.302)S(0.149)S(0.281)S(0.281)LES(0.151)S(0.158)AS(0.158)ALDR 75.018 0.0001252 17744000 1111.2 1119.5 1355.7 1137.8 1038.2 1208.9 997.83 1254.5 1074.5 1233.9 TRUE FALSE 1126.760228 1241.730796 1013.436768 1064.826601 1179.620417 1423.281441 1187.163033 1147.922395 1177.710526 982.4305027 1.146910876 1.263937543 1.031560772 1.083869645 1.2007164 1.448734987 1.208393907 1.1684515 1.198772354 1 9.940211544 -4.995128212 16.37353945 1.187232042 1.098591665 0.001115733 0.120563773 13962489.79 393800788.3 0.031239019 25253304.84 1.01E-05 4.995128212 -0.088640377 GTQGPEQQHLLITAPSSSSSS(ph)LESSASALDR ddPTM_K562_Paclitaxel_30min_R1 1 GTQGPEQQHLLITAPSSSSSSLESSASALDR 31 0 P20333 P20333 TNFRSF1B "Tumor necrosis factor receptor superfamily member 1B;Tumor necrosis factor receptor superfamily member 1b, membrane form;Tumor necrosis factor-binding protein 2" 1 GTQGPEQQHLLIT(0.001)APS(0.001)S(0.011)S(0.033)S(0.106)S(0.106)S(0.437)LES(0.133)S(0.085)AS(0.085)ALDR 78.04 2.18E-05 28944000 2400.3 2736.1 2904.9 2683.9 2891.3 2429 2336.1 2984.8 2366.1 3222.4 TRUE FALSE 2433.911606 3034.836651 2171.522068 2511.766667 3285.14401 2859.749045 2779.36278 2731.222609 2593.374477 2565.673111 0.948644469 1.182861775 0.84637519 0.978989356 1.280421888 1.114619408 1.083287956 1.064524782 1.010796919 1 11.32512166 -4.964184498 11.66362969 1.06428345 0.646091359 0.084801564 0.111992801 134712.0193 1599905.173 0.028846768 1054713.888 1.09E-05 4.964184498 -0.418192091 GTQS(ph)T(ph)EGSPVSK ddPTM_K562_Paclitaxel_30min_R1 1 GTQSTEGSPVSK 12 0 A0A087WXK8;Q9H4H8-2;Q9H4H8 A0A087WXK8 FAM83D Protein FAM83D 2 GT(0.019)QS(0.968)T(0.777)EGS(0.229)PVS(0.007)K 99.011 0.020731 12001000 4547.8 4302.8 7785.4 5270.4 4007.3 3807.1 3676.1 5265.8 5077.1 5650 TRUE FALSE 4611.483231 4772.594255 5819.879481 4932.380133 4553.162104 4482.235731 4373.620784 4818.437422 5564.77814 4498.526899 1.025109627 1.060923801 1.293730062 1.096443401 1.012145133 0.996378555 0.972233996 1.071114507 1.237022311 1 12.13523693 -6.529310723 22.42377444 1.046136254 1.132532266 0.12183759 0.095359765 93.97904901 327632.1215 0.029575489 0.038330633 2.96E-07 6.529310723 0.086396011 GTQSIPNDS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 2 GTQSIPNDSPAR 12 0 J3QRX6;H9KV77;Q9NQ92 J3QRX6 COPRS Coordinator of PRMT5 and differentiation stimulator 1 GTQSIPNDS(1)PAR;GTQSIPNDS(1)PAR 115.26 0.0042321 53459000 4415.2 4870.9 5349 5338.9 4730 4624.9 5548.6 5379 2811.7 6022.7 TRUE FALSE 4477.026422 5402.721334 3998.578794 4996.48685 5374.30608 5445.061078 6601.417884 4922.020375 3081.776348 4795.270434 0.933633772 1.126677089 0.833858872 1.041961432 1.120751406 1.135506569 1.376651844 1.026432282 0.642669979 1 12.22739646 -8.574237609 10.6429207 0.824811635 1.084577336 0.302371929 0.155663738 0.648368657 129.9872039 0.10761276 0.040597504 2.67E-09 8.574237609 0.259765701 GTQSTEGS(ph)PVSK ddPTM_K562_Paclitaxel_30min_R1 2 GTQSTEGSPVSK 12 0 A0A087WXK8;Q9H4H8-2;Q9H4H8 A0A087WXK8 FAM83D Protein FAM83D 1 GTQS(0.002)T(0.001)EGS(0.979)PVS(0.018)K;GTQS(0.001)T(0.005)EGS(0.738)PVS(0.256)K 117.48 0.0035373 8503000 3934 3063.3 5352.8 4180.1 3922.5 2971.41 2918.2 3851.4 3048.7 4863.6 TRUE FALSE 3989.088137 3397.761453 4001.419437 3912.007095 4456.810908 3498.347843 3471.913216 3524.19953 3341.541257 3872.39565 1.030134443 0.877431378 1.033318854 1.010229183 1.150918272 0.903406614 0.896580187 0.910082504 0.862913183 1 11.91901065 GTS(ph)AEQDNRFSNK ddPTM_K562_Paclitaxel_30min_R1 1 GTSAEQDNRFSNK 13 1 A9Z1X7;Q8IYB3-2;Q8IYB3;E9PCT1;M0R1E7 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 GT(0.001)S(0.999)AEQDNRFSNK 165.78 0.0014001 16101000 7349.8 5888.7 10171 7853.9 5714.4 5217.2 5078.3 7427.5 9401.4 7772.1 TRUE FALSE 7452.719876 6531.64818 7603.205257 7350.186007 6492.798026 6142.397167 6041.880914 6796.487514 10304.44648 6188.141754 1.204355067 1.055510433 1.228673414 1.187785655 1.049232271 0.992607702 0.976364336 1.09830831 1.665192377 1 12.59529053 -8.599025436 25 1.348986353 1.095414801 0.230913551 0.169824465 47.07104011 15451.60428 0.108123125 0.040866693 2.52E-09 8.599025436 -0.253571552 GTSFFPTAGGFRS(ph)PS(ph)PGLFR ddPTM_K562_Paclitaxel_30min_R1 1 GTSFFPTAGGFRSPSPGLFR 20 1 E7ESG2;Q9HAW4-2;Q9HAW4-3;Q9HAW4 E7ESG2 CLSPN Claspin 2 GT(0.001)S(0.001)FFPT(0.01)AGGFRS(0.991)PS(0.997)PGLFR 67.88 0.016709 40835000 4473.5 4573 4568.2 4556.9 3955.8 4100.1 3944.1 4911.8 5127.6 4941 TRUE FALSE 4536.142802 5072.295605 3414.901411 4264.64083 4494.646932 4827.195167 4692.472385 4494.511932 5620.128891 3934.021488 1.153054912 1.289341103 0.868043406 1.084041062 1.14250696 1.227038333 1.192792769 1.142472644 1.428596389 1 11.94178912 -7.0415591 3.809834342 1.206200726 1.096670958 0.102766063 0.137655028 0.524826457 15.94180792 0.046159508 0.048388352 9.09E-08 7.0415591 -0.109529769 GTSGS(ph)LADVFANTR ddPTM_K562_Paclitaxel_30min_R1 1 GTSGSLADVFANTR 14 0 Q9P265 Q9P265 DIP2B Disco-interacting protein 2 homolog B 1 GT(0.032)S(0.013)GS(0.955)LADVFANTR 101.9 0.0061574 15335000 783.21 997.11 1071 1048.7 863.86 806.68 862.72 1157.1 787.32 1200.4 TRUE FALSE 794.1773564 1105.977842 800.612804 981.4410758 981.5323573 949.7333717 1026.416616 1058.797133 862.9456038 955.7578211 0.83093995 1.157173729 0.837673296 1.026872137 1.026967643 0.993696678 1.073929602 1.107809017 0.902891491 1 9.900501291 GTTATSAQANSTPTSVASVVTSAES(ph)PASR ddPTM_K562_Paclitaxel_30min_R1 2 GTTATSAQANSTPTSVASVVTSAESPASR 29 0 Q86YP4-2;Q86YP4;Q86YP4-3 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 GTTATSAQANSTPTSVASVVT(0.001)S(0.012)AES(0.952)PAS(0.035)R;GTTATSAQANSTPTSVASVVT(0.004)S(0.038)AES(0.909)PAS(0.049)R 188.93 3.36E-43 145309000 2737.46 3249.2 2886.8 2995.2 2940.07 2526.24 2907.78 3553 2259.44 3577.5 TRUE FALSE 2775.792886 3603.958644 2157.991637 2803.101278 3340.55731 2974.233194 3459.516075 3251.150473 2476.469307 2848.403536 0.974508299 1.265255642 0.757614435 0.984095562 1.172782321 1.044175503 1.214545633 1.141393918 0.869423618 1 11.47593783 GTTMAWNMRRT(ph)SLPLKAPHTS ddPTM_K562_Paclitaxel_30min_R1 1 GTTMAWNMRRTSLPLKAPHTS 21 3 E9PLG9 E9PLG9 GRHL3 1 GT(0.036)T(0.036)MAWNMRRT(0.737)S(0.19)LPLKAPHTS 51.857 0.017222 127500000 2880.6 3146.9 2165.8 2734.1 2981.6 2384.6 2290.8 2410.6 2936.2 2672.1 TRUE FALSE 2920.937287 3490.489184 1619.017004 2558.747063 3387.744399 2807.475329 2725.467341 2205.804484 3218.235129 2127.524553 1.372927651 1.640634031 0.760986284 1.202687442 1.592340917 1.319597146 1.281050946 1.036793902 1.512666505 1 11.05496007 -11.84989265 2.475056744 0.87512806 1.293916033 0.115831673 0.249527353 24740830.88 14468201.79 18236730.99 0.064956854 1.41E-12 11.84989265 0.418787973 GTVSFHSHSDHR ddPTM_K562_Paclitaxel_30min_R1 1 GTVSFHSHSDHR 12 0 O75534;O75534-4;E9PLT0;O75534-2;O75534-3 O75534 CSDE1 Cold shock domain-containing protein E1 0 117.86 0.0027321 1108900 354.3 375.39 329.64 559.51 413.44 283.83 480.81 441.36 487.09 439.06 FALSE TRUE 359.2612931 416.3763497 246.4183051 523.6255329 469.7575276 334.1632653 572.0411875 403.8637131 533.8771709 349.579331 1.027696037 1.191078284 0.704899527 1.497873262 1.343779468 0.955901095 1.636370165 1.155284873 1.527198903 1 8.449476077 -6.273366475 24.94071463 1.310023281 0.996209964 0.285768454 0.236512679 903.2594891 1888801.173 0.063358855 0.094815866 5.33E-07 6.273366475 -0.313813317 GTYFPAILNPPPS(ph)PATER ddPTM_K562_Paclitaxel_30min_R1 2 GTYFPAILNPPPSPATER 18 0 H0YGW5;F5H7J9;O75581 H0YGW5 LRP6 Low-density lipoprotein receptor-related protein 6 1 GT(0.001)YFPAILNPPPS(0.965)PAT(0.034)ER;GT(0.002)YFPAILNPPPS(0.994)PAT(0.004)ER 157.88 2.06E-09 41020000 5357.1 4455.4 5291.6 4431.5 4336.8 4754 5093.9 5506.4 5442.7 6572.5 TRUE FALSE 5432.115928 4941.855639 3955.670134 4147.283425 4927.545583 5597.055151 6060.440933 5038.59695 5965.495654 5233.020892 1.038045909 0.944360006 0.755905664 0.792521855 0.941625437 1.069564839 1.15811518 0.96284671 1.139971687 1 12.3534283 -7.13701974 3.736303776 1.069475455 0.877201967 0.480094213 0.090493192 0.218491435 5.437602715 0.032601483 0.03275086 7.29E-08 7.13701974 -0.192273488 GTYVPSS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 4 GTYVPSSPTR 10 0 Q9Y4P8;Q9Y4P8-4 Q9Y4P8 WIPI2 WD repeat domain phosphoinositide-interacting protein 2 1 GTYVPS(0.001)S(0.998)PTR;GTYVPS(0.026)S(0.973)PT(0.001)R;GTYVPS(0.003)S(0.962)PT(0.035)R;GTYVPS(0.002)S(0.996)PT(0.002)R 178.53 0.00098963 913200000 17176.8 16616.3 18230.6 17486.3 17230.5 15522.9 16114.5 17668.4 15368.4 18054.7 TRUE FALSE 17417.32819 18430.52383 13628.05956 16364.80698 19577.58581 18275.66836 19172.14225 16167.35914 16844.60349 14375.14223 1.211628234 1.282110711 0.948029546 1.138410092 1.361905538 1.271338264 1.333701048 1.124674725 1.17178691 1 13.81128861 -9.204535391 1.521733008 1.001665171 1.21359177 0.239385757 0.112826261 1.208578556 5.238887536 0.116098132 0.033797742 6.24E-10 9.204535391 0.211926599 GVAGPGPIGREPDPDS(ph)DWEPEER ddPTM_K562_Paclitaxel_30min_R1 4 GVAGPGPIGREPDPDSDWEPEER 23 1 Q9NPE2-3;Q9NPE2 Q9NPE2-3 NGRN Neugrin 1 GVAGPGPIGREPDPDS(1)DWEPEER;GVAGPGPIGREPDPDS(1)DWEPEER;GVAGPGPIGREPDPDS(1)DWEPEER;GVAGPGPIGREPDPDS(1)DWEPEER 121.84 2.23E-07 151070000 8150.5 8520.1 9209.7 8954.6 8152.8 8284.7 7665.7 8693.9 6144.9 9951.4 TRUE FALSE 8264.632146 9450.353331 6884.597331 8380.292035 9263.349388 9753.875222 9120.226557 7955.298929 6735.145101 7923.299218 1.043079646 1.192729578 0.868905382 1.057677087 1.169127801 1.231037091 1.151064261 1.004038685 0.850043008 1 12.95188557 -8.49989533 5.261988026 0.923776588 1.101388162 0.334171108 0.101454843 0.209172725 17.25155084 0.066928291 0.028250685 3.16E-09 8.49989533 0.177611574 GVALAPTPSAVVCT(ph)LPR ddPTM_K562_Paclitaxel_30min_R1 1 GVALAPTPSAVVCTLPR 17 0 Q9UPR0 Q9UPR0 PLCL2 Inactive phospholipase C-like protein 2 1 GVALAPTPS(0.004)AVVCT(0.996)LPR 71.031 0.030896 26691000 891.01 844 1237.5 1022.8 822.59 902.74 796.96 849.35 1294.7 818.87 TRUE FALSE 903.486889 936.1507742 925.0778198 957.2021859 934.6406846 1062.828264 948.1789996 777.192416 1419.06172 651.9838445 1.385750424 1.435849649 1.418866169 1.46813789 1.433533503 1.630145092 1.454298304 1.192042445 2.176528961 1 9.348692406 -6.536314767 1.540934561 1.49887401 1.412432547 0.009913101 0.287415806 2.538809187 12.22409485 0.094883539 0.159712133 2.91E-07 6.536314767 -0.086441463 GVAPADS(ph)PEAPRR ddPTM_K562_Paclitaxel_30min_R1 2 GVAPADSPEAPRR 13 1 Q9P2G1 Q9P2G1 ANKIB1 Ankyrin repeat and IBR domain-containing protein 1 1 GVAPADS(1)PEAPRR;GVAPADS(1)PEAPRR 88.311 0.011388 29041000 2512.3 3098.6 2892.1 3033 2376 2776.8 2856.6 2780.1 3133.6 3421.7 TRUE FALSE 2547.479951 3436.915627 2161.953586 2838.476955 2699.651426 3269.226492 3398.624938 2543.913152 3434.596281 2724.355662 0.935076131 1.26155174 0.793565105 1.041889279 0.990932081 1.199999889 1.247496788 0.933766904 1.260700403 1 11.41169934 -7.245755426 24.00850994 1.131697229 1.009224942 0.154783495 0.144331149 959.0184149 1468034.907 0.04603694 0.045861802 5.68E-08 7.245755426 -0.122472288 GVDEATIIDILTKR ddPTM_K562_Paclitaxel_30min_R1 2 GVDEATIIDILTKR 14 1 P04083;Q5T3N0;Q5T3N1 P04083 ANXA1 Annexin A1;Annexin 0 ; 214.42 3.29E-18 7117600 2165.5 2057.34 3048.6 2431.6 1719.56 2273.7 1898.47 2459.57 2604.6 2644.9 FALSE TRUE 2195.823681 2281.967339 2278.943225 2275.648059 1953.793184 2676.908771 2258.694772 2250.614176 2854.783468 2105.867928 1.042716712 1.083623198 1.082187157 1.080622402 0.927785242 1.271166503 1.072571903 1.068734723 1.35563272 1 11.04019924 -7.262703549 24.99965186 1.152851505 1.049846497 0.215091213 0.10492208 200.7861497 3970613.046 0.034745389 0.032347243 5.46E-08 7.262703549 -0.103005008 GVDFESS(ph)EDDDDDPFMNTSSLRR ddPTM_K562_Paclitaxel_30min_R1 1 GVDFESSEDDDDDPFMNTSSLRR 23 1 F8W7U8;P49959-2;P49959;P49959-3 F8W7U8 MRE11A Double-strand break repair protein MRE11A 1 GVDFES(0.167)S(0.833)EDDDDDPFMNTSSLRR 126.32 2.27E-08 15666000 567.78 630.31 661.14 469.15 730.36 919.95 575.11 841.69 405.11 946.37 TRUE FALSE 575.7306718 699.1293774 494.2270301 439.0608188 829.8473971 1083.090216 684.2341202 770.1831808 444.0226256 753.4992745 0.764075947 0.927843464 0.655909099 0.582695742 1.101324746 1.437413747 0.908075354 1.022141901 0.589280761 1 9.557462313 -6.771978054 24.99956423 1.027117051 0.741094654 0.288944843 0.211714898 284.4194233 674690.148 0.069274627 0.079364971 1.69E-07 6.771978054 -0.286022396 GVDLLLEGVQGES(ph)SPTRR ddPTM_K562_Paclitaxel_30min_R1 3 GVDLLLEGVQGESSPTRR 18 1 F5H7T0;F6RJM5;Q96S38-2;Q96S38 F5H7T0 RPS6KC1 Ribosomal protein S6 kinase delta-1 1 GVDLLLEGVQGES(0.495)S(0.495)PT(0.009)RR;GVDLLLEGVQGES(0.573)S(0.379)PT(0.048)RR;GVDLLLEGVQGES(0.491)S(0.491)PT(0.018)RR 86.707 0.0027588 67177000 4294 4209.5 4113.7 4232.6 3686.76 3881.1 4063.8 4551.73 3940.5 4322.9 TRUE FALSE 4354.129248 4669.107446 3075.145557 3961.13998 4188.959129 4569.358592 4834.884836 4165.032125 4319.002632 3441.890607 1.265039987 1.356553121 0.893446628 1.150861672 1.217051791 1.327572289 1.404717752 1.210100088 1.25483437 1 11.74898553 -6.964284696 4.893699755 1.264013941 1.161839991 0.038667325 0.147420456 0.513571211 29.76009013 0.048062504 0.053681728 1.09E-07 6.964284696 -0.10217395 GVDLLLEGVQGESS(ph)PTRR ddPTM_K562_Paclitaxel_30min_R1 1 GVDLLLEGVQGESSPTRR 18 1 F5H7T0;F6RJM5;Q96S38-2;Q96S38 F5H7T0 RPS6KC1 Ribosomal protein S6 kinase delta-1 1 GVDLLLEGVQGES(0.191)S(0.565)PT(0.244)RR 103.73 0.0019586 20256000 2551.3 2306 3305 2802.4 2441.4 2616.6 2393 3085.7 2605.8 3081.4 TRUE FALSE 2587.026071 2557.776878 2470.611874 2622.666607 2773.960013 3080.617271 2847.059258 2823.550525 2856.098733 2453.408989 1.054461805 1.042539948 1.00701183 1.06898875 1.130655356 1.255647666 1.160450325 1.150868256 1.16413478 1 11.26057204 -6.735347832 3.203786367 1.159456135 1.036365205 0.396903738 0.060346853 0.21356742 4.524655941 0.018325569 0.023152577 1.84E-07 6.735347832 -0.123090929 GVEEEEEDGEMRE ddPTM_K562_Paclitaxel_30min_R1 3 GVEEEEEDGEMRE 13 1 P62306 P62306 SNRPF Small nuclear ribonucleoprotein F 0 ;; 176.42 0.00015614 173642000 3359.95 3157.08 3787.34 3310.76 2758.46 3308.46 2935.88 3347.55 3005.75 3714 FALSE TRUE 3406.999666 3501.780671 2831.179176 3098.422672 3134.208953 3895.168928 3492.947904 3063.154733 3294.465718 2957.084761 1.152148126 1.184200303 0.957422395 1.047796368 1.059898246 1.317232762 1.181213318 1.035869777 1.11409242 1 11.52995988 -9.252034126 1.358374033 1.001632434 1.120209365 0.121825732 0.094791341 2.196034325 7.275656678 0.098312015 0.02930297 5.60E-10 9.252034126 0.118576932 GVEICIAT(ph)PGR ddPTM_K562_Paclitaxel_30min_R1 1 GVEICIATPGR 11 0 J3KTA4;P17844-2;P17844;J3QSF1;J3KRZ1;A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 J3KTA4;A0A1X7SBZ2 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 1 GVEICIAT(1)PGR 96.756 0.028532 28817000 1825.5 1592 1618 1654.3 1347.1 1567.2 1641.6 1967.4 1260.2 2187.2 TRUE FALSE 1851.062632 1765.819944 1209.515889 1548.200602 1530.597827 1845.120915 1953.08503 1800.25709 1381.247841 1741.447439 1.062944876 1.013995544 0.694546308 0.88903091 0.878922781 1.059532934 1.121529703 1.033770557 0.793160798 1 10.76607121 -7.252830265 24.58420611 1.01120514 0.900882998 0.127851495 0.120391541 1024.542534 2925688.32 0.042466278 0.04180953 5.59E-08 7.252830265 -0.110322143 GVESSDVHPAPTVQQMSS(ph)PKPAEER ddPTM_K562_Paclitaxel_30min_R1 2 GVESSDVHPAPTVQQMSSPKPAEER 25 1 Q5T481 Q5T481 RBM20 RNA-binding protein 20 1 GVESSDVHPAPT(0.048)VQQMS(0.322)S(0.631)PKPAEER;GVESSDVHPAPTVQQMS(0.216)S(0.784)PKPAEER 110.55 6.95E-07 65290000 2867.4 2534.2 4587.2 3223.3 2491.4 2457.4 2184.98 2954 2896 3629.8 TRUE FALSE 2907.552447 2810.892526 3429.104626 3016.571965 2830.77086 2893.185386 2599.568549 2703.039262 3174.17374 2890.044768 1.006057927 0.972612105 1.186523013 1.043780359 0.979490315 1.001086702 0.899490755 0.935293215 1.098313 1 11.49687613 -6.728555717 5.238143836 0.978601928 1.057178851 0.171995406 0.070699157 0.312578728 21.46731841 0.022115149 0.027904074 1.87E-07 6.728555717 0.078576922 GVFPLLYREPPEAIWADDVDRR ddPTM_K562_Paclitaxel_30min_R1 1 GVFPLLYREPPEAIWADDVDRR 22 2 P30613-2;P30613 P30613-2 PKLR Pyruvate kinase PKLR 0 94.922 0.00024772 7499100 877.2 1051.5 1163.3 1088.6 879.29 1147.7 938.35 954.85 1264.8 1333.8 FALSE TRUE 889.4835064 1166.306326 869.6105275 1018.782068 999.0641845 1351.22848 1116.397014 873.7295325 1386.289691 1061.970828 0.837578098 1.098247047 0.818864798 0.959331501 0.940764245 1.272378153 1.051250171 0.82274344 1.305393383 1 10.05252842 -7.055189332 24.99730914 1.08013515 0.934953926 0.229430954 0.14540384 505.819966 229103.2492 0.046628551 0.04662877 8.81E-08 7.055189332 -0.145181224 GVGDDQLGEES(ph)EERDDHLLPM ddPTM_K562_Paclitaxel_30min_R1 2 GVGDDQLGEESEERDDHLLPM 21 1 H0YF90;F5GX30;P20645 H0YF90 M6PR Cation-dependent mannose-6-phosphate receptor 1 GVGDDQLGEES(1)EERDDHLLPM;GVGDDQLGEES(1)EERDDHLLPM 68.192 0.0091117 78128000 2037.58 2090.8 2544.59 2287.92 1927.58 2066.74 1932.7 2414.41 2361.19 2733.23 TRUE FALSE 2066.112406 2319.080615 1902.176783 2141.183052 2190.14903 2433.247321 2299.419736 2209.2908 2587.99285 2176.196226 0.949414571 1.065657861 0.874083302 0.983910838 1.006411556 1.118119447 1.056623345 1.015207532 1.189227708 1 11.08759293 -7.036346301 3.798377309 1.075452963 0.969891843 0.373378276 0.066007453 0.252886846 7.724779283 0.021461697 0.022582159 9.20E-08 7.036346301 -0.10556112 GVGS(ph)PEPGPTAPYLGR ddPTM_K562_Paclitaxel_30min_R1 3 GVGSPEPGPTAPYLGR 16 0 Q9C0B5-2;Q9C0B5 Q9C0B5-2 ZDHHC5 Palmitoyltransferase ZDHHC5 1 GVGS(0.998)PEPGPT(0.002)APYLGR;GVGS(0.989)PEPGPT(0.011)APYLGR;GVGS(1)PEPGPTAPYLGR 198.38 5.40E-13 208999000 2935.76 3147.01 4250.7 3569.38 2962.12 2929.85 3104.34 3445.25 3835.86 3388.84 TRUE FALSE 2976.869698 3490.611194 3177.558213 3340.455943 3365.610893 3449.41776 3693.372309 3152.554508 4204.311492 2698.192548 1.1032829 1.293684988 1.17766177 1.238034678 1.247357568 1.278417941 1.368832003 1.168394936 1.558195502 1 11.39777759 -6.792492513 1.405229975 1.290882621 1.199240079 0.05327585 0.140142826 1.184597422 4.88680718 0.050743829 0.068690441 1.61E-07 6.792492513 -0.091642542 GVGVALDDPYENYRR ddPTM_K562_Paclitaxel_30min_R1 1 GVGVALDDPYENYRR 15 1 J3QK89;Q8IWX8 J3QK89 CHERP Calcium homeostasis endoplasmic reticulum protein 0 84.365 0.031049 4602600 785.01 833.72 938.62 1107.3 804.62 913.49 1001.5 1088.8 917.79 1065.4 FALSE TRUE 796.002562 924.7483691 701.6537723 1036.282734 914.2228663 1075.484625 1191.529397 996.2996439 1005.94783 848.2708952 0.938382498 1.0901569 0.827157664 1.22164127 1.077748714 1.267855153 1.404656701 1.174506457 1.185880402 1 9.728381253 -6.2810965 24.84756446 1.205068063 0.965724808 0.457548507 0.117919309 642.0031878 811521.8543 0.033264087 0.04941621 5.23E-07 6.2810965 -0.239343255 GVIST(ph)PVIR ddPTM_K562_Paclitaxel_30min_R1 2 GVISTPVIR 9 0 Q9NZB2-4;Q9NZB2;A0A494C0Y9;A0A0C4DG79;Q9NZB2-6 Q9NZB2-4 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 1 GVIS(0.128)T(0.872)PVIR;GVIS(0.025)T(0.975)PVIR 108.57 0.016889 18523300 5482.3 4387.3 3829.5 3830.1 2919.1 3519.8 4480.2 5025.1 4633.1 5700.3 TRUE FALSE 5559.069114 4866.320251 2862.695362 3584.454529 3316.730841 4143.98711 5330.294562 4598.186389 5078.129956 4538.575731 1.224848817 1.072213077 0.630747515 0.789775194 0.730786713 0.913058932 1.174442133 1.013134221 1.118881838 1 12.14802392 -7.630144069 6.630095933 1.076594991 0.874438847 0.227194363 0.164475996 0.341444296 18.89249341 0.068788993 0.05299681 2.34E-08 7.630144069 -0.202156144 GVLDLDRPGEPAGEES(ph)PGPLQER ddPTM_K562_Paclitaxel_30min_R1 2 GVLDLDRPGEPAGEESPGPLQER 23 1 A0A669KBI7;Q9UMN6 A0A669KBI7 KMT2B Histone-lysine N-methyltransferase 2B 1 GVLDLDRPGEPAGEES(1)PGPLQER;GVLDLDRPGEPAGEES(1)PGPLQER 114.49 4.40E-06 80586000 2689.7 2708.9 2958.9 2887.6 2175.1 2626.5 2519.9 3261.2 2330.3 3316.7 TRUE FALSE 2727.364098 3004.666863 2211.8891 2702.40226 2471.385445 3092.272897 2998.03787 2984.140704 2554.135727 2640.754719 1.032797207 1.137806113 0.837597329 1.023344668 0.935863307 1.170980733 1.135295849 1.130033275 0.967199153 1 11.36673459 -7.254113672 24.74007565 1.09224101 0.994498557 0.178363554 0.091933577 817.2721209 2760057.597 0.030879972 0.030250599 5.57E-08 7.254113672 -0.097742453 GVLEGDDVLFYDES(ph)PPPRPK ddPTM_K562_Paclitaxel_30min_R1 1 GVLEGDDVLFYDESPPPRPK 20 1 Q5T670;Q7L590-2;Q7L590 Q5T670 MCM10 Protein MCM10 homolog 1 GVLEGDDVLFY(0.006)DES(0.994)PPPRPK 64.589 0.015255 21547000 1041.3 912.16 1372.1 974.8 869.23 841.38 768.67 1006 1082.1 1210.3 TRUE FALSE 1055.881413 1011.752714 1025.696385 912.280691 987.6338422 990.5869294 914.5211198 920.5340207 1186.04054 963.6401957 1.095721637 1.049927886 1.064397676 0.946702613 1.024898968 1.02796348 0.949027577 0.955267355 1.230791892 1 9.912350763 GVNTFS(ph)PEGR ddPTM_K562_Paclitaxel_30min_R1 4 GVNTFSPEGR 10 0 P28066 P28066 PSMA5 Proteasome subunit alpha type-5 1 GVNT(0.012)FS(0.988)PEGR;GVNT(0.004)FS(0.996)PEGR;GVNTFS(1)PEGR;GVNT(0.012)FS(0.988)PEGR 117.95 0.0033634 514093000 10203.1 8932.9 11308 9902.6 9313.3 8548.1 8904.6 9939.1 9618.8 10682.6 TRUE FALSE 10345.97488 9908.224231 8453.155544 9267.491558 10581.92914 10063.98551 10594.20136 9094.711417 10542.72872 8505.480256 1.216389265 1.164922372 0.993848118 1.089590626 1.244130704 1.183235421 1.245573565 1.069276648 1.239521861 1 13.05417698 -5.353675876 4.785690696 1.140288653 1.215444919 0.067482039 0.09084816 0.616412956 21.79359427 0.0229706 0.106001472 4.43E-06 5.353675876 0.075156266 GVPAGNS(ph)DTEGGQPGR ddPTM_K562_Paclitaxel_30min_R1 3 GVPAGNSDTEGGQPGR 16 0 S4R3H4;E7EQT4;Q9UKV3-5;Q9UKV3;G3V3B0;Q9UKV3-3;Q9UKV3-2;G3V3T3 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 GVPAGNS(0.956)DT(0.044)EGGQPGR;GVPAGNS(0.917)DT(0.083)EGGQPGR;GVPAGNS(0.947)DT(0.053)EGGQPGR 202.96 7.76E-14 199661000 1300.84 1387.57 1608.93 1663.52 1295.9 1579.28 1282.04 1677.29 1039.11 1569.97 TRUE FALSE 1319.055773 1539.069585 1202.735723 1556.829273 1472.42352 1859.343134 1525.300397 1534.793745 1138.921158 1250.009252 1.055236808 1.231246555 0.962181456 1.2454542 1.177930097 1.487463497 1.220231286 1.227825908 0.911130183 1 10.28772306 -8.758433721 24.99925861 0.955565026 1.204907235 0.362873681 0.129972964 80.70565752 671306.5854 0.10052383 0.034277654 1.74E-09 8.758433721 0.24934221 GVPAGNS(ph)DTEGGQPGRK ddPTM_K562_Paclitaxel_30min_R1 2 GVPAGNSDTEGGQPGRK 17 1 S4R3H4;E7EQT4;Q9UKV3-5;Q9UKV3;G3V3B0;Q9UKV3-3;Q9UKV3-2;G3V3T3 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 GVPAGNS(1)DTEGGQPGRK;GVPAGNS(0.999)DT(0.001)EGGQPGRK 99.011 0.0015109 97358000 3075.2 2401.32 4930.4 3484.6 2665.6 2192.9 1928.37 2775.4 3454.7 3378.2 TRUE FALSE 3118.262288 2663.504238 3685.659542 3261.113352 3028.699849 2581.780025 2294.268141 2539.612446 3786.539371 2689.720986 1.15932556 0.990252986 1.370275787 1.212435554 1.126027519 0.959869086 0.852976258 0.94419178 1.407781473 1 11.39324081 -7.060262027 4.912007125 1.019081381 1.181697624 0.159199782 0.161846924 0.395598893 19.50275365 0.055508578 0.056760863 8.70E-08 7.060262027 0.162616242 GVPTGPSHSDS(ph)GRSSSSK ddPTM_K562_Paclitaxel_30min_R1 1 GVPTGPSHSDSGRSSSSK 18 1 Q9BRK4 Q9BRK4 LZTS2 Leucine zipper putative tumor suppressor 2 1 GVPTGPS(0.002)HS(0.02)DS(0.943)GRS(0.008)S(0.02)S(0.002)S(0.005)K 83.065 0.0051215 2213800 345.01 246.51 402.37 300.29 257.01 185.33 188.96 598.39 366.98 314.36 TRUE FALSE 349.8412044 273.4247954 300.7867171 281.0307434 292.0191132 218.1956733 224.8141736 547.5530345 402.2300687 250.2932594 1.397725233 1.092417735 1.201737185 1.12280588 1.16670786 0.871760086 0.898203068 2.187645947 1.607035162 1 7.967475629 -8.240318957 24.99773171 1.673005541 1.104211526 0.347475443 0.303095516 713.7002276 844723.8875 0.137132765 0.079075028 5.75E-09 8.240318957 -0.568794014 GVQVPAS(ph)PDTVPQPSLR ddPTM_K562_Paclitaxel_30min_R1 1 GVQVPASPDTVPQPSLR 17 0 Q92613;F2Z2B6;F2Z3N8 Q92613 JADE3 Protein Jade-3 1 GVQVPAS(0.784)PDT(0.216)VPQPSLR 147.92 4.23E-08 20101000 1188.3 1208.2 1171.7 1018.4 1062.6 1153.7 1380.2 1281.8 897.58 1711.2 TRUE FALSE 1204.939866 1340.115362 875.8898436 953.0843822 1207.34411 1358.292496 1642.085745 1172.903089 983.7965695 1362.456501 0.88438777 0.98360231 0.642875456 0.699533807 0.886152409 0.996943752 1.205239025 0.860873788 0.722075581 1 10.41199445 -6.998112907 23.85367152 0.961366986 0.802710104 0.204992796 0.143239918 60.26089612 761684.0343 0.048473075 0.0545493 1.00E-07 6.998112907 -0.158656881 GVQVPVS(ph)PGTIPQPVAR ddPTM_K562_Paclitaxel_30min_R1 3 GVQVPVSPGTIPQPVAR 17 0 D6RCS1;D6RC05;D6RBB3;D6RFK0;D6RGE7;Q6IE81-3;Q6IE81-2;Q6IE81 D6RCS1 JADE1 Protein Jade-1 1 GVQVPVS(0.709)PGT(0.291)IPQPVAR;GVQVPVS(0.676)PGT(0.324)IPQPVAR;GVQVPVS(0.986)PGT(0.014)IPQPVAR 172.42 2.45E-09 137477000 10226.8 9707.6 11025.8 10148.5 10284.7 9879 10953.3 11051.7 9272 12327 TRUE FALSE 10370.00675 10767.5086 8242.200425 9497.620633 11685.65026 11630.90194 13031.63149 10112.7891 10162.61703 9814.750634 1.056573635 1.097074088 0.839776856 0.96768843 1.190621209 1.185043041 1.327759816 1.030366382 1.035443223 1 13.2607359 -6.754967819 24.99671383 1.142543516 0.9871564 0.267088478 0.110361221 202.925251 783804.0526 0.034746098 0.043780997 1.76E-07 6.754967819 -0.155387116 GVS(ph)PTPSKIPVR ddPTM_K562_Paclitaxel_30min_R1 1 GVSPTPSKIPVR 12 1 F8W130;Q12815;F8VXV6;F8VR46;F8VVX4;F8VVT5;F8W052;F8VXF3;B7Z5Q9;F8VVS4;F8W1E3;Q12815-3;Q12815-2 F8W130 TROAP Tastin 1 GVS(0.866)PT(0.134)PS(0.001)KIPVR 87.184 0.015406 47005000 3419.8 3522.5 5446.6 3672.7 3360.6 3092.2 2759 3600.4 2522.3 4023.2 TRUE FALSE 3467.687751 3907.098462 4071.538467 3437.14946 3818.370615 3640.558253 3282.505847 3294.523547 2764.578185 3203.269632 1.08254632 1.219722006 1.271057056 1.073012845 1.192022856 1.136513211 1.024736043 1.028487741 0.863048854 1 11.64532953 -7.946126533 1.354123281 0.944143844 1.174689393 0.653893746 0.067120716 0.267389616 0.951560463 0.046129084 0.022702544 1.13E-08 7.946126533 0.230545549 GVSNDTSS(ph)LETERGFEELPLCSCR ddPTM_K562_Paclitaxel_30min_R1 2 GVSNDTSSLETERGFEELPLCSCR 24 1 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;Q96KQ7-2;A0A0G2JRR0 A0A0G2JIS2 EHMT2 Histone-lysine N-methyltransferase EHMT2 1 GVS(0.002)NDT(0.044)S(0.246)S(0.681)LET(0.028)ERGFEELPLCSCR;GVSNDT(0.003)S(0.223)S(0.754)LET(0.019)ERGFEELPLCSCR 97.57 2.80E-05 68973000 714.52 771.18 849.35 862.83 701.22 663.73 589.71 1002.35 1100.21 825.84 TRUE FALSE 724.5254845 855.3800404 634.9210879 807.4919457 796.7380358 781.4331963 701.604394 917.194111 1205.890086 657.5333547 1.101884002 1.300892243 0.965610464 1.228062333 1.211707406 1.188431265 1.067024797 1.394901269 1.833960327 1 9.36092027 -8.395276991 5.42798496 1.476595252 1.158218753 0.232030275 0.208270791 0.264377245 10.46308238 0.110138278 0.051033077 4.02E-09 8.395276991 -0.318376499 GVTEAIQNFS(ph)FR ddPTM_K562_Paclitaxel_30min_R1 2 GVTEAIQNFSFR 12 0 E3W994;J3KR49;O75122;E7ERI8;E7EW49;O75122-3;A0A0U1RQI6 E3W994 CLASP2 CLIP-associating protein 2 1 GVTEAIQNFS(1)FR;GVTEAIQNFS(1)FR 133.16 0.00056456 11614700 2976.55 2867.59 2903.16 2561.58 2241.5 2730.05 3534.05 3526.73 2519.84 4152.01 TRUE FALSE 3018.230883 3180.683174 2170.221352 2397.291724 2546.830249 3214.186036 4204.617539 3227.112273 2761.881891 3305.828083 0.913002978 0.962144157 0.656483428 0.725171323 0.770406139 0.972278641 1.271880277 0.976188777 0.835458415 1 11.69079598 -7.363458268 4.899872241 1.031037528 0.801970084 0.388292135 0.129343252 0.24839359 9.433559713 0.050052866 0.043904277 4.33E-08 7.363458268 -0.229067443 GVVDSEDLPLNISR ddPTM_K562_Paclitaxel_30min_R1 2 GVVDSEDLPLNISR 14 0 P08238;P07900;P07900-2 P08238;P07900 HSP90AB1;HSP90AA1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha 0 ; 215.77 1.10E-17 66234000 3553.1 3993 3660.6 3535.7 3484.2 3338 4228.1 5619.5 4004.1 5647.7 FALSE TRUE 3602.854362 4428.969243 2736.436256 3308.936027 3958.807028 3929.947432 5030.359903 5142.088399 4388.711696 4496.69564 0.801222642 0.98493863 0.608543801 0.73585946 0.880381361 0.873963405 1.118679205 1.143526005 0.975985934 1 12.13464952 -7.573911938 2.728895927 1.071393348 0.79877292 0.579591827 0.102786957 0.199472961 3.017883897 0.0447802 0.034106928 2.67E-08 7.573911938 -0.272620428 GVVIPTWNIS(ph)PIKK ddPTM_K562_Paclitaxel_30min_R1 1 GVVIPTWNISPIKK 14 1 Q3T8J9-3;A0A087WUE6;Q3T8J9-2;Q3T8J9;A4PB68 Q3T8J9-3 GON4L GON-4-like protein 1 GVVIPTWNIS(1)PIKK 84.94 0.013758 3673000 1442.9 1261 2849.8 1786.8 1102.5 1258.1 1220.8 1765.8 1633.1 2554.3 TRUE FALSE 1463.105052 1398.680244 2130.332744 1672.202645 1252.679165 1481.20637 1452.440427 1615.784268 1789.966552 2033.732258 0.719418717 0.687740601 1.047499117 0.822233428 0.615950876 0.728319259 0.714174848 0.794492127 0.880138742 1 10.98991404 -8.976229263 2.191236538 0.998449748 0.76524166 0.322786652 0.108447789 0.391785508 4.300890789 0.11136556 0.030893914 1.06E-09 8.976229263 -0.233208088 GVVS(ph)LFLCIVEQIFT(ph)S(ph)S(ph)KK ddPTM_K562_Paclitaxel_30min_R1 1 GVVSLFLCIVEQIFTSSKK 19 1 A6NHU4 A6NHU4 AKR1C1 4 GVVS(1)LFLCIVEQIFT(1)S(1)S(1)KK 60.631 0.014698 18943000 569.19 831.27 1033.5 961.08 924.01 809.5 632.18 962.28 542.87 1006.8 TRUE FALSE 577.1604161 922.0308698 772.5801428 899.4406304 1049.875806 953.0534591 752.1328548 880.5283076 595.0150891 801.6136074 0.719998277 1.150218586 0.963781223 1.122037628 1.309703074 1.188918764 0.938273562 1.098444811 0.742271693 1 9.646763188 -8.741936142 24.99105639 0.871135787 1.071568718 0.176678842 0.163136064 340.8062727 436705.5346 0.11070303 0.041708569 1.81E-09 8.741936142 0.200432931 GWAFGSNS(ph)LPIAGSVGMGVAR ddPTM_K562_Paclitaxel_30min_R1 2 GWAFGSNSLPIAGSVGMGVAR 21 0 M0QZ22;Q5PRF9;A0A087WZT0 M0QZ22 SAMD4B Protein Smaug homolog 2 1 GWAFGS(0.005)NS(0.576)LPIAGS(0.418)VGMGVAR;GWAFGS(0.134)NS(0.808)LPIAGS(0.058)VGMGVAR 105.38 0.00020803 42756000 3730.8 3699.6 4550.4 4107.3 4571.5 3651.9 4459.2 5050.9 4874.7 5829.2 TRUE FALSE 3783.042711 4103.534839 3401.595241 3843.876162 5194.215696 4299.51319 5305.309921 4621.794518 5342.936716 4641.20584 0.815099102 0.884152735 0.732911954 0.828206353 1.119152193 0.926378475 1.143088694 0.995817612 1.15119581 1 12.18028397 -6.749101821 24.325058 1.053609144 0.814155238 0.713358306 0.074783375 84.22900391 166066.9707 0.020824717 0.026673741 1.78E-07 6.749101821 -0.239453906 GWVHDSIDYR ddPTM_K562_Paclitaxel_30min_R1 2 GWVHDSIDYR 10 0 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 0 ; 99.973 0.020397 9984800 4254.7 4187.4 4161.9 4322.8 4201.5 4246.3 5149.5 5529.9 3494.7 5358.7 FALSE TRUE 4314.278927 4644.594493 3111.176871 4045.554956 4773.815432 4999.321684 6126.590743 5060.100478 3830.38155 4266.593999 1.011176345 1.088595375 0.729194499 0.948193092 1.118882048 1.171735976 1.435944162 1.185981249 0.897760966 1 12.05886912 -6.818869752 3.986284477 1.165797238 0.937855676 0.254789373 0.156389369 0.286818736 9.234309606 0.051884017 0.061317635 1.52E-07 6.818869752 -0.227941562 GY(ph)TPLMET(ph)HLS(ph)S(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 GYTPLMETHLSSK 13 0 P40126;P40126-2 P40126 DCT L-dopachrome tautomerase 4 GY(0.995)T(0.006)PLMET(1)HLS(1)S(1)K 72.815 0.015495 40066000 0 0 133.66 72.232 0 116.18 0 0 164.81 0 TRUE FALSE 0 0 99.91587991 67.59936282 0 136.7828918 0 0 180.6407369 0 0 GYADS(ph)PSK ddPTM_K562_Paclitaxel_30min_R1 2 GYADSPSK 8 0 Q5T0R8;Q5T0S3;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R1;Q5T0R9;Q01518-2;Q01518 Q5T0R8 CAP1 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 1 1 GYADS(0.996)PS(0.004)K;GYADS(0.992)PS(0.008)K 117.02 0.0053364 74862000 6240.5 6136.9 11260.8 8799.9 6554.7 6175.7 5235.6 8301.9 4599.8 9785.4 TRUE FALSE 6327.886254 6806.947496 8417.871768 8235.513801 7447.561112 7270.873684 6229.027768 7596.601776 5041.631342 7791.130109 0.812191064 0.873679094 1.080442972 1.057037129 0.955902547 0.933224524 0.79950247 0.975032078 0.647098851 1 12.92761689 -7.594247959 5.941109677 0.853701332 0.962096852 0.143289562 0.116249571 0.397409449 24.74445113 0.045080144 0.034769076 2.55E-08 7.594247959 0.108395519 GYAFIEYEHER ddPTM_K562_Paclitaxel_30min_R1 2 GYAFIEYEHER 11 0 P08621;P08621-2;M0QYR1;P08621-3 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 0 ; 183.03 0.00073193 115571000 6992.9 7787.4 7221.3 7228 7605.9 7217.5 7750 8204.1 5579.3 8261.8 FALSE TRUE 7090.822175 8637.654667 5398.193503 6764.428431 8641.952349 8497.422286 9220.522042 7507.110497 6115.216694 6578.040625 1.07795354 1.313104488 0.820638517 1.028334852 1.313757826 1.291786228 1.401712541 1.141238087 0.929641065 1 12.6834422 -4.981773997 17.2346164 1.150269644 0.928996672 0.005476008 0.182032504 32017459.97 674190026.7 0.047884291 185088872 1.04E-05 4.981773997 -0.221272972 GYDRYEDYDYR ddPTM_K562_Paclitaxel_30min_R1 1 GYDRYEDYDYR 11 1 Q13595;Q13595-4;Q13595-3 Q13595 TRA2A Transformer-2 protein homolog alpha 0 121.36 0.020448 168100000 3560.1 3910.9 4268.4 4053.4 4075.6 3961.2 3505.6 4160.6 3769.4 4672.9 FALSE TRUE 3609.952384 4337.905288 3190.789629 3793.433066 4630.76572 4663.663202 4170.7693 3807.13106 4131.467712 3720.560415 0.970271137 1.165927926 0.857609949 1.019586472 1.24464199 1.253484067 1.121005664 1.023268174 1.110442313 1 11.86130423 -6.567346151 18.20873907 1.132754084 1.002046368 0.252225549 0.102990288 12.17305408 4983.660545 0.03151745 0.040689339 2.71E-07 6.567346151 -0.130707716 GYDS(ph)EDDTWEPEQHLVNCEEYIHDFNRR ddPTM_K562_Paclitaxel_30min_R1 1 GYDSEDDTWEPEQHLVNCEEYIHDFNRR 28 1 Q9Y232-2;Q9Y232 Q9Y232-2 CDYL Chromodomain Y-like protein 1 GY(0.001)DS(0.995)EDDT(0.004)WEPEQHLVNCEEYIHDFNRR 71.556 0.0001077 18071000 526.67 579.65 752.43 425.1 540.37 544.67 643.82 717.61 322.62 861.26 TRUE FALSE 534.0450049 642.9381473 562.4697406 397.8359887 613.9775425 641.259577 765.981484 656.6445513 353.6090925 685.7347392 0.778792402 0.937590165 0.820243905 0.580160178 0.895357209 0.935142323 1.117023012 0.957578075 0.515664545 1 9.421506801 -6.970794718 24.99442294 0.915629315 0.786481949 0.116286835 0.166250255 481.8395242 412365.2251 0.053374164 0.060519785 1.07E-07 6.970794718 -0.129147365 GYIFLEYAS(ph)PAHAVDAVK ddPTM_K562_Paclitaxel_30min_R1 1 GYIFLEYASPAHAVDAVK 18 0 P55884-2;P55884;C9JZG1 P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B 1 GYIFLEY(0.026)AS(0.973)PAHAVDAVK 88.951 0.002127 12830000 2557.1 1928.7 3263.8 2244.6 1982.9 2042.4 1869.5 3035 2480.4 3959.4 TRUE FALSE 2592.907289 2139.281988 2439.813324 2100.641402 2253.004551 2404.590963 2224.227866 2777.157806 2718.653503 3152.472107 0.822499677 0.678604573 0.77393653 0.66634734 0.714678663 0.762763597 0.705550371 0.880946036 0.862387806 1 11.62226789 -8.730097302 1.100484348 0.991399332 0.726154947 0.736415731 0.051357653 0.216294962 0.534788253 0.045072813 0.015169766 1.86E-09 8.730097302 -0.265244385 GYLPSHYER ddPTM_K562_Paclitaxel_30min_R1 1 GYLPSHYER 9 0 Q6P2Q9;I3L1T8 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 111.61 0.011436 7748900 2333.4 2251.6 2353.9 2424.2 2177.4 2245.6 2150.9 2573.6 2463.8 2585.7 FALSE TRUE 2366.074799 2497.437302 1759.628832 2268.722662 2473.998744 2643.82563 2559.022047 2354.956616 2700.458999 2058.732921 1.149286911 1.213094364 0.854714477 1.101999506 1.20170942 1.284200395 1.24300827 1.143886413 1.311709242 1 11.00754097 -6.724622318 4.747860735 1.211841551 1.070729761 0.188843209 0.117946028 0.295933458 15.27502488 0.0356151 0.044996008 1.89E-07 6.724622318 -0.14111179 GYNDDYYEESYFTTR ddPTM_K562_Paclitaxel_30min_R1 2 GYNDDYYEESYFTTR 15 0 P50402;Q5HY57 P50402 EMD Emerin 0 ; 267.21 9.86E-89 43199000 1906.43 1631.12 2029.35 2007.64 1536.36 1956.57 1608.98 1956.11 1951.78 2132.67 FALSE TRUE 1933.125902 1809.211198 1517.015494 1878.878956 1745.638243 2303.540218 1914.275556 1789.926246 2139.25719 1698.030683 1.13845169 1.065476152 0.893396986 1.106504714 1.028036925 1.356595167 1.127350391 1.054118906 1.259846015 1 10.72964681 GYNHGQGSYSYS(ph)NSYNSPGGGGGSDYNYESK ddPTM_K562_Paclitaxel_30min_R1 1 GYNHGQGSYSYSNSYNSPGGGGGSDYNYESK 31 0 Q12906;Q12906-7 Q12906 ILF3 Interleukin enhancer-binding factor 3 1 GYNHGQGSY(0.051)S(0.043)Y(0.036)S(0.226)NS(0.226)Y(0.19)NS(0.226)PGGGGGSDYNYESK 133.44 1.12E-24 58533000 4952.5 4170.1 6470.7 4505.7 4275.9 3319.4 3598.7 4845.1 3224.5 5173.2 TRUE FALSE 5021.85028 4625.40562 4837.091756 4216.724569 4858.349972 3908.048983 4281.534539 4433.478513 3534.227632 4118.899 1.219221515 1.122971362 1.174365226 1.023750417 1.179526366 0.948809132 1.039485197 1.07637466 0.858051541 1 12.00804303 -6.493821887 0.425730474 0.96174335 1.24192745 0.527124013 0.073823842 1.647748505 0.48060876 0.064266054 0.212903406 3.21E-07 6.493821887 0.280184099 GYNHGQGSYSYSNS(ph)YNSPGGGGGSDYNYESK ddPTM_K562_Paclitaxel_30min_R1 1 GYNHGQGSYSYSNSYNSPGGGGGSDYNYESK 31 0 Q12906;Q12906-7 Q12906 ILF3 Interleukin enhancer-binding factor 3 1 GYNHGQGS(0.002)Y(0.01)S(0.011)Y(0.01)S(0.128)NS(0.457)Y(0.379)NS(0.005)PGGGGGSDYNYESK 80.685 4.57E-06 74782000 879.8 761.15 1554.6 1074.6 720.36 1066.1 817.79 1174.3 625.39 1021.7 TRUE FALSE 892.1199144 844.254931 1162.122003 1005.679966 818.4852278 1255.157866 972.9613833 1074.535885 685.4615038 813.4769792 1.096675059 1.037835062 1.42858622 1.236273418 1.006156595 1.542954378 1.196052757 1.320917386 0.842631717 1 9.667957709 -8.762262566 24.99999987 0.92131577 1.234807045 0.370851644 0.162470342 23.05023922 699829.1698 0.129049396 0.040782516 1.73E-09 8.762262566 0.313491275 GYPHWPAR ddPTM_K562_Paclitaxel_30min_R1 1 GYPHWPAR 8 0 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;H3BPQ6;M0R0J3;Q9Y3E1;O75475-3;O75475-2;O75475;P51858 Q7Z4V5-2;O75475-3;P51858 HDGFRP2;HDGFRP3;PSIP1;HDGF Hepatoma-derived growth factor-related protein 2;Hepatoma-derived growth factor-related protein 3;PC4 and SFRS1-interacting protein;Hepatoma-derived growth factor 0 102.77 0.027569 10785000 2880.5 3027.8 3129.9 2969.7 2862.9 3117.1 3274.1 3312.5 2283.2 3751.7 FALSE TRUE 2920.835887 3358.385443 2339.718035 2779.236734 3252.875449 3669.873919 3895.343383 3031.082449 2502.511562 2987.101481 0.977816089 1.124295731 0.783273702 0.930412559 1.088973867 1.228573566 1.304054585 1.014723627 0.837772529 1 11.54453054 -6.777078934 13.00882542 1.0985047 0.95392596 0.147848952 0.142560446 1.705488929 1413.538785 0.047447973 0.054733527 1.67E-07 6.777078934 -0.14457874 GYQSLS(ph)DSPPGSR ddPTM_K562_Paclitaxel_30min_R1 1 GYQSLSDSPPGSR 13 0 Q9NPR2 Q9NPR2 SEMA4B Semaphorin-4B 1 GYQS(0.002)LS(0.925)DS(0.072)PPGS(0.001)R 95.273 0.011855 46055000 1594 1842.9 1799.3 1582.9 1676.8 1714.8 1527.6 1700.3 1572.4 1924.8 TRUE FALSE 1616.320918 2044.114054 1345.044462 1481.379879 1905.208548 2018.895703 1817.454125 1555.848902 1723.436046 1532.524703 1.054678541 1.333821275 0.877665762 0.96662708 1.243182928 1.317365846 1.185921585 1.01521946 1.124573093 1 10.58169461 -8.933171963 1.38668153 1.01083328 1.135479609 0.064624648 0.141961128 1.326489676 5.713753634 0.14335682 0.043563358 1.17E-09 8.933171963 0.124646329 GYQSLSDS(ph)PPGSR ddPTM_K562_Paclitaxel_30min_R1 1 GYQSLSDSPPGSR 13 0 Q9NPR2 Q9NPR2 SEMA4B Semaphorin-4B 1 GYQSLS(0.06)DS(0.939)PPGSR 103.66 0.0068447 37343000 980.68 1089.6 1165.6 947.89 796.06 806.35 1168.3 1054.8 988.59 1119 TRUE FALSE 994.4125457 1208.566213 871.329864 887.096578 904.4968494 949.3448508 1389.978826 965.1881561 1083.548487 890.9471858 1.116129622 1.356495909 0.977981499 0.995678074 1.015208156 1.065545597 1.560113605 1.083328138 1.21617589 1 9.799196103 GYSDRDGYGRDR ddPTM_K562_Paclitaxel_30min_R1 1 GYSDRDGYGRDR 12 2 P38159;P38159-2;H3BUY5;H0Y6E7;H3BT71 P38159 RBMX "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed" 0 70.412 0.031139 1687300 595.78 655.01 658.6 548.06 435.94 691.28 737.78 702.74 1278.3 491.18 FALSE TRUE 604.1227581 726.5262069 492.3282845 512.9098846 495.3224085 813.8688019 877.7699035 643.0378506 1401.086427 391.0772464 1.544765807 1.857756271 1.258902913 1.311530879 1.266559006 2.081094744 2.24449239 1.644273239 3.582633456 1 8.61130979 -7.332263076 5.87252491 2.166525913 1.453470468 0.217009758 0.625615758 0.3379147 21.4781314 0.211569579 0.186636068 4.65E-08 7.332263076 -0.713055444 GYSFTTTAER ddPTM_K562_Paclitaxel_30min_R1 2 GYSFTTTAER 10 0 P60709;P63261;A0A2R8Y793;I3L3I0;I3L1U9;I3L4N8;A0A2R8YEA7 P60709 ACTB;ACTG1 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed" 0 ; 218.58 6.27E-14 168615000 1627.41 1470.48 1757.2 1465.25 1331.55 1529.77 2207.18 1816.43 1279.29 1970.19 FALSE TRUE 1650.198761 1631.031979 1313.573127 1371.275423 1512.929653 1801.05323 2625.980883 1662.112934 1402.171521 1568.664197 1.051977067 1.03975853 0.837383253 0.874167605 0.964470061 1.148144539 1.674023598 1.059572174 0.893863405 1 10.61532083 -7.283325248 5.087850555 1.193410337 0.94646215 0.18699189 0.20349929 0.29507371 22.65401465 0.075690296 0.069008037 5.21E-08 7.283325248 -0.246948187 GYSSPEPDIQDSS(ph)GSEAQSVKPSTR ddPTM_K562_Paclitaxel_30min_R1 2 GYSSPEPDIQDSSGSEAQSVKPSTR 25 1 Q9BZF1-3;Q9BZF1-2;Q9BZF1 Q9BZF1-3 OSBPL8 Oxysterol-binding protein-related protein 8 1 GYSS(0.001)PEPDIQDS(0.244)S(0.622)GS(0.132)EAQSVKPSTR;GYSSPEPDIQDS(0.054)S(0.472)GS(0.472)EAQS(0.001)VKPSTR 90.136 6.47E-06 15193000 1760.25 1819.92 3149 2765.2 2325.8 1869.7 1328.96 2250.49 1167.68 1996.91 TRUE FALSE 1784.898931 2018.62502 2353.996004 2587.852449 2642.613336 2201.265043 1581.123222 2059.296827 1279.840881 1589.938646 1.122621263 1.269624476 1.480557762 1.627642963 1.662085102 1.384496848 0.994455495 1.295205216 0.804962433 1 10.63475538 -7.703306224 5.501881765 1.048109224 1.443934205 0.527300419 0.185274564 0.176658096 10.81696938 0.077798031 0.058824754 1.98E-08 7.703306224 0.395824981 GYSSPEPDIQDSSGS(ph)EAQSVKPSTR ddPTM_K562_Paclitaxel_30min_R1 1 GYSSPEPDIQDSSGSEAQSVKPSTR 25 1 Q9BZF1-3;Q9BZF1-2;Q9BZF1 Q9BZF1-3 OSBPL8 Oxysterol-binding protein-related protein 8 1 GYSSPEPDIQDS(0.099)S(0.099)GS(0.802)EAQSVKPSTR 109.23 1.13E-06 15731000 1547 1785.7 3684.9 2471.5 2419.3 1909.9 1716.8 2032.9 1431.5 1877.9 TRUE FALSE 1568.662773 1980.668765 2754.601421 2312.989052 2748.849619 2248.593949 2042.553838 1860.192456 1569.001971 1495.182949 1.04914437 1.324699941 1.842317305 1.54696056 1.838470416 1.503892182 1.366089574 1.244123642 1.04937123 1 10.54610631 -8.370771502 1.484743557 1.011408885 1.53646176 0.442395814 0.217954102 0.419233626 1.628912325 0.199653036 0.071388156 4.26E-09 8.370771502 0.525052875 GYTS(ph)DSEVYTDHGRPGK ddPTM_K562_Paclitaxel_30min_R1 4 GYTSDSEVYTDHGRPGK 17 1 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 GYT(0.032)S(0.967)DSEVYT(0.001)DHGRPGK;GYT(0.22)S(0.769)DS(0.011)EVYTDHGRPGK;GYT(0.152)S(0.842)DS(0.006)EVYTDHGRPGK;GY(0.001)T(0.162)S(0.826)DS(0.011)EVYTDHGRPGK 213.94 1.20E-22 439980000 10085.8 8802.52 15727.3 10294.2 8205.91 8212.2 7984.3 11622.3 7819.59 12386.2 TRUE FALSE 10227.03232 9763.608902 11756.7486 9633.976087 9323.693869 9668.518365 9499.279244 10634.91307 8570.696558 9861.885641 1.037026051 0.990034691 1.192140026 0.97688986 0.945427093 0.980392464 0.963231535 1.078385357 0.869072799 1 13.26764781 -6.454006984 24.99968168 0.975173967 1.068055725 0.311127079 0.067844048 215.0716987 78067.86925 0.018418888 0.027319617 3.52E-07 6.454006984 0.092881758 GYYS(ph)PGIVSTR ddPTM_K562_Paclitaxel_30min_R1 3 GYYSPGIVSTR 11 0 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 GYYS(1)PGIVSTR;GYYS(1)PGIVSTR;GYYS(1)PGIVSTR 153.49 0.00059285 297952000 7705.5 7831.8 8937.2 7831.9 7364.4 7190.2 7337.1 8213.6 7231.9 8420.5 TRUE FALSE 7813.400774 8686.902409 6680.893326 7329.596988 8367.55596 8465.281015 8729.276423 7515.803412 7926.556308 6704.397478 1.165414312 1.295702177 0.996494219 1.093252155 1.248069791 1.262646053 1.302022509 1.121025929 1.18229212 1 12.71089197 -9.559309493 1.486419952 1.000115794 1.188507558 0.268432554 0.091828088 5.24408472 12.38560947 0.094057255 0.027207025 2.76E-10 9.559309493 0.188391764 GYYS(ph)PYSVSGS(ph)GSTAGSR ddPTM_K562_Paclitaxel_30min_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149-4;H0YDN1;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149 Q15149-4 PLEC Plectin 2 GY(0.001)Y(0.025)S(0.976)PYS(0.129)VS(0.123)GS(0.74)GS(0.006)TAGSR 135.95 2.35E-08 17959000 2291.1 2312.2 2233.5 2499.8 1954.3 3370.5 2602.8 2602.3 1385.9 3378.7 TRUE FALSE 2323.182469 2564.653815 1669.625301 2339.474017 2220.508747 3968.210851 3096.667712 2381.218372 1519.021887 2690.119085 0.863598374 0.9533607 0.620651075 0.869654444 0.825431394 1.475106018 1.151126628 0.885172104 0.564667154 1 11.39345432 GYYS(ph)PYSVSGSGSTAGSR ddPTM_K562_Paclitaxel_30min_R1 4 GYYSPYSVSGSGSTAGSR 18 0 Q15149-4;H0YDN1;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149 Q15149-4 PLEC Plectin 1 GY(0.001)Y(0.063)S(0.867)PY(0.008)S(0.021)VS(0.041)GSGSTAGSR;GYYS(0.971)PYS(0.029)VSGSGSTAGSR;GYYS(0.996)PYS(0.003)VSGSGSTAGSR;GYYS(0.999)PYS(0.001)VSGSGSTAGSR 234.36 3.93E-42 773200000 6571.1 6905.4 7788.9 7299.7 6659.9 8368.5 6309.1 7789.8 4564.93 7549.9 TRUE FALSE 6663.115674 7659.354925 5822.495863 6831.529914 7567.091133 9852.535975 7506.218789 7128.007868 5003.411923 6011.226236 1.108445334 1.274175122 0.968603682 1.136461954 1.258826542 1.639022653 1.248700098 1.185782665 0.832344638 1 12.5534436 -8.672864212 5.616121927 0.919024101 1.235845248 0.360238732 0.166500832 0.229610384 11.06274461 0.130298876 0.046371039 2.12E-09 8.672864212 0.316821146 GYYSPYSVS(ph)GSGSTAGSR ddPTM_K562_Paclitaxel_30min_R1 2 GYYSPYSVSGSGSTAGSR 18 0 Q15149-4;H0YDN1;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149 Q15149-4 PLEC Plectin 1 GYYS(0.002)PYS(0.01)VS(0.981)GS(0.007)GSTAGSR;GYYS(0.032)PYS(0.227)VS(0.736)GS(0.005)GS(0.001)TAGSR 228.32 1.57E-41 43580000 3482.9 3621.6 4397.6 3641.5 3863.8 4951.4 4379 4583.1 2481.3 5111.4 TRUE FALSE 3531.671346 4017.018535 3287.371491 3407.950489 4390.114975 5829.461269 5209.89239 4193.737048 2719.639952 4069.693874 0.867797789 0.987056683 0.80776874 0.837397257 1.078733465 1.432407805 1.280168128 1.030479731 0.668266468 1 11.99070456 -6.816166496 6.33746014 1.112449157 0.878383144 0.209827768 0.191411038 0.314012437 26.50856658 0.064698635 0.074318418 1.53E-07 6.816166496 -0.234066013 GYYSPYSVSGS(ph)GSTAGSR ddPTM_K562_Paclitaxel_30min_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149-4;H0YDN1;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149 Q15149-4 PLEC Plectin 1 GYYSPYSVS(0.165)GS(0.607)GS(0.071)T(0.003)AGS(0.154)R 155.26 2.33E-09 13220000 3137.2 2896.3 3048.7 2871 3304.8 3359.7 4154.8 4218.9 2672.9 5504.5 TRUE FALSE 3181.130479 3212.527829 2279.017979 2686.86691 3754.969711 3955.495622 4943.15161 3860.478111 2929.643988 4382.679879 0.725841396 0.733005357 0.520005577 0.613064834 0.856774808 0.902528985 1.127883338 0.880848754 0.668459497 1 12.09759759 -6.86227608 4.205502113 0.917729092 0.645004993 0.525416949 0.120966419 0.187227043 5.996726259 0.040729313 0.047124129 1.37E-07 6.86227608 -0.272724099 GYYSPYSVSGSGSTAGS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 GYYSPYSVSGSGSTAGSR 18 0 Q15149-4;H0YDN1;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149 Q15149-4 PLEC Plectin 1 GYYSPYSVS(0.001)GS(0.013)GS(0.28)T(0.28)AGS(0.425)R 127.2 3.02E-06 14834000 1774.3 2064 2240.5 1911.7 2288.1 2470.3 2756.5 3287.7 1573.1 3461.5 TRUE FALSE 1799.145674 2289.3545 1674.858065 1789.092118 2599.777958 2908.37302 3279.531485 3008.389364 1724.203284 2756.0444 0.65279996 0.83066677 0.607703586 0.649152139 0.943300463 1.055270742 1.189941456 1.091560558 0.625607949 1 11.42838341 -6.84941781 4.634862687 1.008938917 0.690131122 0.494158999 0.148129896 0.182162831 6.928388282 0.047967596 0.05543424 1.41E-07 6.84941781 -0.318807795 HAALCAMEVLPLALPS(ph)PPR ddPTM_K562_Paclitaxel_30min_R1 2 HAALCAMEVLPLALPSPPR 19 0 Q9ULI0-2;Q9ULI0;H7BYF1 Q9ULI0-2 ATAD2B ATPase family AAA domain-containing protein 2B 1 HAALCAMEVLPLALPS(1)PPR;HAALCAMEVLPLALPS(1)PPR 111.25 0.00026483 20479600 3583.6 3668.4 4341.4 4181.1 3276.2 3150.5 3481.7 4961.5 2388.2 5561.8 TRUE FALSE 3633.781456 4068.928318 3245.359876 3912.94296 3722.473907 3709.19694 4142.334399 4539.989606 2617.597281 4428.302107 0.8205812 0.918846144 0.732867767 0.883621502 0.840609745 0.837611538 0.935422719 1.025221292 0.591106302 1 12.11253793 -7.716061328 24.69982283 0.890039454 0.839925339 0.038782016 0.119065241 441.2546181 240178.8458 0.043534725 0.033721707 1.92E-08 7.716061328 -0.050114115 HAASYSS(ph)DSENQGSYSGVIPPPPGR ddPTM_K562_Paclitaxel_30min_R1 2 HAASYSSDSENQGSYSGVIPPPPGR 25 0 Q96D71-3;Q96D71;E9PMG1;H0YDT0;Q96D71-4;Q96D71-2;F2Z3L2 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 1 HAAS(0.008)YS(0.199)S(0.783)DS(0.01)ENQGSYSGVIPPPPGR;HAAS(0.007)YS(0.187)S(0.742)DS(0.064)ENQGSYSGVIPPPPGR 159.75 8.68E-26 87401000 798.7 930.23 1285.5 952.33 839.23 964.04 783.13 783.04 870.72 957.18 TRUE FALSE 809.8842642 1031.795657 960.9596261 891.2518163 953.5473343 1134.998958 931.7248293 716.5158644 954.3565465 762.1061906 1.062692147 1.35387387 1.260926152 1.169458833 1.25120009 1.489292401 1.222565622 0.940178512 1.2522619 1 9.573848224 -8.019916818 24.33331911 1.074006477 1.271235297 0.328937528 0.128021988 638.4851816 780064.3904 0.058056759 0.034131932 9.55E-09 8.019916818 0.19722882 HAEATLGS(ph)GNLR ddPTM_K562_Paclitaxel_30min_R1 2 HAEATLGSGNLR 12 0 Q7L9L4;D6RCK3;Q9H8S9-2;Q9H8S9;Q7L9L4-2 Q7L9L4 MOB1B;MOB1A MOB kinase activator 1B;MOB kinase activator 1A 1 HAEATLGS(1)GNLR;HAEAT(0.016)LGS(0.984)GNLR 93.51 0.010852 42320000 5595.2 4690.8 6057 4792.9 4950.3 4699.7 4423.3 5137.4 4090.6 5504.1 TRUE FALSE 5673.550063 5202.957407 4527.835438 4485.504846 5624.614669 5533.125808 5262.598084 4700.945803 4483.520407 4382.361399 1.294633086 1.187249735 1.033195354 1.023536043 1.283466642 1.26259003 1.20085899 1.072696972 1.023083219 1 12.09749275 -8.45722331 3.207329643 1.015680495 1.178434973 0.392530524 0.088246256 0.315836376 6.243810932 0.068871021 0.026672431 3.49E-09 8.45722331 0.162754478 HAPS(ph)PEPAVQGTGVAGVPEESGDAAAIPAK ddPTM_K562_Paclitaxel_30min_R1 1 HAPSPEPAVQGTGVAGVPEESGDAAAIPAK 30 0 P13051 P13051 UNG Uracil-DNA glycosylase 1 HAPS(1)PEPAVQGTGVAGVPEESGDAAAIPAK 113.64 2.57E-11 42747000 2441.8 2183 4572.9 2916.8 2136.1 1819.7 1599.2 2625.3 2439.5 3055.1 TRUE FALSE 2475.992734 2421.347322 3418.414838 2729.729503 2427.072984 2142.398245 1902.639852 2402.264378 2673.824875 2432.468943 1.017892845 0.995427847 1.405327228 1.122205285 0.997781695 0.880750503 0.782184643 0.987582754 1.099222616 1 11.24820567 -6.833062297 3.715436823 0.939331955 1.145878581 0.314050991 0.129084869 0.27862834 7.614043418 0.04395869 0.051835381 1.47E-07 6.833062297 0.206546626 HAPTYTIPLS(ph)PVLS(ph)PTLPAEAPTAQVPPSLPR ddPTM_K562_Paclitaxel_30min_R1 2 HAPTYTIPLSPVLSPTLPAEAPTAQVPPSLPR 32 0 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 2 HAPT(0.018)Y(0.002)T(0.022)IPLS(0.916)PVLS(0.83)PT(0.212)LPAEAPT(0.001)AQVPPSLPR;HAPT(0.013)Y(0.002)T(0.052)IPLS(0.904)PVLS(0.953)PT(0.075)LPAEAPT(0.001)AQVPPSLPR 79.494 2.79E-05 117650000 1397.89 1536.86 1915.66 2032.23 1537.22 1200.33 1287 1617.21 1309.13 1970.84 TRUE FALSE 1417.464773 1704.659572 1432.02794 1901.891864 1746.615389 1413.191672 1531.201531 1479.817916 1434.877786 1569.181726 0.903314606 1.08633662 0.912595346 1.212027793 1.113074006 0.900591467 0.975796178 0.943050694 0.914411481 1 10.61579672 -7.267841269 24.96297416 0.945024771 1.049611382 0.235308895 0.088778393 753.7119162 2938948.181 0.031192515 0.028197856 5.40E-08 7.267841269 0.104586611 HAPTYTIPLS(ph)PVLSPTLPAEAPTAQVPPSLPR ddPTM_K562_Paclitaxel_30min_R1 2 HAPTYTIPLSPVLSPTLPAEAPTAQVPPSLPR 32 0 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 HAPT(0.012)YT(0.041)IPLS(0.567)PVLS(0.183)PT(0.195)LPAEAPT(0.001)AQVPPSLPR;HAPT(0.002)Y(0.002)T(0.002)IPLS(0.98)PVLS(0.013)PT(0.002)LPAEAPTAQVPPSLPR 92.609 4.91E-10 61936000 2992.4 2646.5 3864 2943.6 2821.5 2480.15 2591.7 2969.9 2680.9 3386.2 TRUE FALSE 3034.302832 2935.45382 2888.485411 2754.810671 3205.836068 2919.969779 3083.461545 2717.588457 2938.412424 2696.090581 1.125445433 1.088781601 1.07136067 1.021779717 1.189068383 1.083038456 1.143678765 1.007973722 1.089878969 1 11.39665325 -8.931924249 1.035475241 1.005552132 1.098765192 0.251636574 0.049851453 0.737911792 1.778233848 0.046543205 0.015527832 1.17E-09 8.931924249 0.09321306 HAQDSDPRS(ph)PTLGIAR ddPTM_K562_Paclitaxel_30min_R1 2 HAQDSDPRSPTLGIAR 16 1 J3KMY0;Q99618;F5GX58;F8WDL1 J3KMY0 CDCA3 Cell division cycle-associated protein 3 1 HAQDSDPRS(0.776)PT(0.224)LGIAR;HAQDSDPRS(0.5)PT(0.5)LGIAR 102.63 0.0018805 90239000 4686.8 4153.6 5606.3 4629.6 3702.2 3246.7 3601.6 4449 3192.8 4791.9 TRUE FALSE 4752.42966 4607.104095 4190.920227 4332.678177 4206.502319 3822.456659 4284.984798 4071.02968 3499.482706 3815.30815 1.245621447 1.207531322 1.098448687 1.135603733 1.102532785 1.001873639 1.123103202 1.067025132 0.917221511 1 11.89758387 -2 0.221058259 0.977154484 2.466821498 0.711097715 0.050330444 28.18098427 0.36098695 0.078723052 15.00458904 0.01 2 1.489667014 HAS(ph)APSHVQPSDSEKNR ddPTM_K562_Paclitaxel_30min_R1 1 HASAPSHVQPSDSEKNR 17 1 A0A3B3IRT3;O60343-2;O60343-3;O60343 A0A3B3IRT3 TBC1D4 TBC1 domain family member 4 1 HAS(0.986)APS(0.014)HVQPSDSEKNR 77.222 0.012004 12041000 2314.4 1892.4 3557.7 2333.5 2030.7 1670.6 1430.8 1950.6 2456.7 2617.6 TRUE FALSE 2346.808741 2099.018632 2659.514634 2183.839754 2307.31572 1966.857454 1702.286831 1784.884355 2692.677012 2084.131683 1.126036689 1.007142998 1.276078021 1.047841541 1.107087301 0.943729933 0.81678468 0.856416305 1.291989865 1 11.02523072 -7.255087585 22.13738941 0.962497711 1.112423495 0.181644621 0.136037015 168.9272339 588746.5238 0.045675092 0.044464473 5.56E-08 7.255087585 0.149925784 HAS(ph)PILPITEFSDIPR ddPTM_K562_Paclitaxel_30min_R1 5 HASPILPITEFSDIPR 16 0 G5E972;P42167;H0YJH7 G5E972 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin" 1 HAS(1)PILPITEFSDIPR;HAS(0.932)PILPIT(0.001)EFS(0.067)DIPR;HAS(1)PILPITEFSDIPR;HAS(0.999)PILPITEFS(0.001)DIPR;HAS(1)PILPITEFSDIPR 144.68 3.42E-08 487471000 9639.57 9237.92 10660.88 9559.97 8587.38 8069.58 7723.56 9483.34 8513.48 10682.3 TRUE FALSE 9774.553721 10246.54735 7969.408992 8946.836313 9757.126542 9500.60671 9189.06519 8677.671074 9331.237793 8505.241396 1.149238836 1.204733278 0.936999742 1.051920327 1.147189843 1.117029637 1.08040028 1.020273343 1.097116161 1 13.05413647 -7.601462131 0.012542581 2.33E-07 2.155417879 0.169288037 0.06925316 2419.886203 15.80635264 1324.457164 1389.177691 2.50E-08 7.601462131 2.155417646 HASSSPES(ph)PKPAPAPGSHR ddPTM_K562_Paclitaxel_30min_R1 3 HASSSPESPKPAPAPGSHR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 HAS(0.036)S(0.036)S(0.031)PES(0.898)PKPAPAPGSHR;HAS(0.001)S(0.001)S(0.001)PES(0.997)PKPAPAPGSHR;HAS(0.001)SSPES(0.999)PKPAPAPGSHR 69.069 0.012002 14794600 1995.92 1552.78 3315.6 1892.25 1425.52 1679.48 1446.76 2382.64 1366.92 2230.88 TRUE FALSE 2023.869038 1722.317772 2478.535773 1770.889554 1619.699958 1977.312197 1721.275157 2180.21986 1498.218774 1776.225431 1.139421271 0.96965044 1.395394824 0.996995946 0.911877473 1.11321016 0.969063457 1.22744547 0.843484586 1 10.79459898 HATAEEVEEEERDR ddPTM_K562_Paclitaxel_30min_R1 1 HATAEEVEEEERDR 14 1 Q8TDN6 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog 0 107.09 0.004112 10452000 269.51 359.94 660.67 465.93 390.9 351.11 335.53 446.1 338.56 436.13 FALSE TRUE 273.2839715 399.2394664 493.8756874 436.0473352 444.147198 413.3744287 399.1950659 408.2010205 371.0802007 347.2464666 0.787002886 1.149729385 1.422262672 1.255728646 1.279054622 1.190435234 1.14960152 1.175536859 1.068636362 1 8.439816204 -8.893024901 1.534449305 0.998201941 1.193900342 0.122020302 0.152558362 0.786328689 4.061385967 0.151009217 0.045000999 1.28E-09 8.893024901 0.195698401 HAVSEGTK ddPTM_K562_Paclitaxel_30min_R1 1 HAVSEGTK 8 0 Q99880;Q99877;Q5QNW6-2;P57053;O60814;P58876;P62807;Q5QNW6;Q93079;U3KQK0;Q99879;P06899;P23527;P33778;Q16778;Q8N257;Q96A08;A0A2R8Y619 Q99880 HIST1H2BL;HIST1H2BN;HIST2H2BF;H2BFS;HIST1H2BK;HIST1H2BD;HIST1H2BC;HIST1H2BH;HIST1H2BM;HIST1H2BJ;HIST1H2BO;HIST1H2BB;HIST2H2BE;HIST3H2BB;HIST1H2BA Histone H2B type 1-L;Histone H2B type 1-N;Histone H2B type 2-F;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-M;Histone H2B type 1-J;Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 3-B;Histone H2B type 1-A 0 118.5 0.0099404 1176200 2952.6 2600.3 5676.7 3909.3 3004.3 2577.1 2332.3 2991.7 3822.2 4204.2 FALSE TRUE 2993.94551 2884.209548 4243.546876 3658.574995 3413.536523 3034.112501 2774.84175 2737.536411 4189.339388 3347.381732 0.894414127 0.861631501 1.267721227 1.092966171 1.019763145 0.906413652 0.828958861 0.817814229 1.25152723 1 11.70881737 HCAPS(ph)PDRS(ph)PELSSSR ddPTM_K562_Paclitaxel_30min_R1 2 HCAPSPDRSPELSSSR 16 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 2 HCAPS(1)PDRS(0.93)PELS(0.026)S(0.006)S(0.038)R;HCAPS(0.998)PDRS(0.951)PELS(0.022)S(0.018)S(0.01)R 265.6 2.38E-93 110756000 7626.8 8609.9 11261.7 9067.8 7273 7281 7092.7 7738.4 5993 8079.6 TRUE FALSE 7733.598731 9549.957999 8418.544552 8486.231894 8263.705733 8572.18312 8438.502799 7080.974618 6568.654427 6432.973085 1.202181111 1.484532559 1.308655336 1.319177273 1.284585778 1.332538316 1.311757828 1.100731268 1.021091545 1 12.65126994 -8.370975412 2.429115689 1.011184116 1.328463688 0.796681855 0.06576235 0.12727113 1.412720538 0.046060845 0.017805273 4.26E-09 8.370975412 0.317279573 HCAPS(ph)PDRSPELSSSR ddPTM_K562_Paclitaxel_30min_R1 2 HCAPSPDRSPELSSSR 16 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 HCAPS(0.981)PDRS(0.017)PELSSSR;HCAPS(0.532)PDRS(0.461)PELS(0.002)S(0.002)S(0.002)R 80.507 0.015318 61531000 1777.14 1851.96 1830.25 1674.09 1619.81 1502.03 1568.05 1515.63 1317.15 1827.28 TRUE FALSE 1802.025443 2054.163256 1368.180751 1566.72136 1840.455546 1768.393931 1865.579302 1386.867771 1443.668143 1454.879333 1.23860818 1.411913146 0.940408404 1.076873748 1.265022812 1.215491822 1.282291431 0.953252782 0.992294075 1 10.50668379 -8.270563938 24.67528423 0.979580046 1.200059176 0.42332863 0.118934288 599.0790862 1620060.37 0.067714865 0.03326987 5.36E-09 8.270563938 0.22047913 HCNGVDWR ddPTM_K562_Paclitaxel_30min_R1 1 HCNGVDWR 8 0 O15371-2;O15371-3;O15371 O15371-2 EIF3D Eukaryotic translation initiation factor 3 subunit D 0 117.89 0.010362 5776000 567.94 596.14 615.64 567.12 519.25 591.9 542.7 762.62 486.26 667.8 FALSE TRUE 575.8929122 661.2285812 460.2140679 530.7474615 589.980641 696.8651543 645.6744919 697.8306709 532.9674457 531.7019934 1.083112193 1.243607489 0.865548886 0.998204761 1.109607728 1.310631073 1.214354093 1.312446971 1.002380003 1 9.054474065 -7.006077795 22.75260318 1.192582025 1.049274244 0.141242145 0.133159817 140.2321265 524977.4838 0.042092403 0.046067478 9.86E-08 7.006077795 -0.143307781 HDGASSDGHLAHIFR ddPTM_K562_Paclitaxel_30min_R1 1 HDGASSDGHLAHIFR 15 0 J3KT43;E7EP87;A0A088AWN8;Q9UHQ1-4;Q9UHQ1-3;Q9UHQ1;Q9UHQ1-2 J3KT43 NARF Nuclear prelamin A recognition factor 0 159.66 2.07E-05 5670400 753.47 821.46 841.74 717.03 698.89 698.84 623.33 752.92 686.48 776.11 FALSE TRUE 764.0209047 911.1497808 629.2323265 671.0429051 794.0906503 822.7694618 741.6036135 688.9547464 752.4194713 617.938356 1.236403109 1.474499474 1.018276856 1.085938263 1.285064509 1.331474983 1.200125557 1.114924717 1.217628691 1 9.271319115 -14.99999998 0.161182185 0.17543358 1.276318707 0.238782584 0.121725989 211.6138333 1.950104986 55.60877088 0.539270765 1.00E-15 14.99999998 1.100885127 HDLDLICR ddPTM_K562_Paclitaxel_30min_R1 2 HDLDLICR 8 0 E9PMD7;P62136-3;P62136;P62136-2;F8VR82;F8VYE8;F8W0W8;P36873;P62140;P36873-2 E9PMD7 PPP1CA;PPP1CC;PPP1CB Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase PP1-alpha catalytic subunit;Serine/threonine-protein phosphatase PP1-gamma catalytic subunit;Serine/threonine-protein phosphatase PP1-beta catalytic subunit 0 ; 127.46 0.0028205 10395000 7726.1 7216.9 10102.3 8465.5 7616.1 6635 7157.1 8026 5753.4 9528.3 FALSE TRUE 7834.289237 8004.865548 7551.849421 7922.56072 8653.541762 7811.62409 8515.122362 7344.141203 6306.039777 7586.42723 1.03267177 1.055156176 0.995442149 1.044307219 1.140661012 1.029684179 1.122415348 0.968063224 0.831226556 1 12.8892049 -8.494041676 7.197266582 0.909984516 1.058003678 0.535536538 0.055545209 0.133427545 26.77727368 0.031117177 0.014030787 3.21E-09 8.494041676 0.148019162 HDS(ph)PDLAPNVTYSLPR ddPTM_K562_Paclitaxel_30min_R1 3 HDSPDLAPNVTYSLPR 16 0 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 HDS(1)PDLAPNVTYSLPR;HDS(1)PDLAPNVTYSLPR;HDS(1)PDLAPNVTYSLPR 110.22 0.0011394 113089000 3249.99 3470.2 4459.7 3610.38 3077.44 2671.39 2973.52 3359.52 3122.5 4166.54 TRUE FALSE 3295.499887 3849.088171 3333.793578 3378.826386 3496.639429 3145.123508 3537.729897 3074.107807 3422.430077 3317.396861 0.993399351 1.160273652 1.004942646 1.018517388 1.05403109 0.948069719 1.066417449 0.926662662 1.031661336 1 11.6958359 -6.43013709 1.049122316 0.996409388 1.070477519 0.144306075 0.057282247 0.943449649 2.063469889 0.021678678 0.049906083 3.71E-07 6.43013709 0.074068131 HDT(ph)PDPSPLR ddPTM_K562_Paclitaxel_30min_R1 1 HDTPDPSPLR 10 0 Q9BRD0;Q9BRD0-2 Q9BRD0 BUD13 BUD13 homolog 1 HDT(1)PDPSPLR 84.821 0.027751 3508200 270 335.74 522.59 400.21 304.89 273.08 211.54 372.31 318.34 464.31 TRUE FALSE 273.780833 372.3972286 390.6556912 374.5423219 346.4211798 321.5069038 251.6786107 340.6799416 348.9179794 369.6833671 0.740581961 1.007341043 1.056730505 1.013143558 0.937075375 0.869681821 0.680795062 0.921545225 0.943829261 1 8.530146325 -7.167884765 4.082164311 0.86570784 0.966016844 0.070942714 0.111625537 0.484106388 14.50728132 0.039184693 0.039001206 6.79E-08 7.167884765 0.100309003 HDWDYCEHR ddPTM_K562_Paclitaxel_30min_R1 1 HDWDYCEHR 9 0 P17568 P17568 NDUFB7 NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 0 120.99 0.0020688 3991700 1265.5 1066.2 1721.9 1319.3 1211 1321.2 979.84 1225.9 983.07 1331.7 FALSE TRUE 1283.220904 1182.611322 1287.185049 1234.686003 1375.958702 1555.496269 1165.759525 1121.752143 1077.498266 1060.298809 1.210244597 1.115356644 1.213983302 1.164469857 1.29770843 1.46703576 1.099463203 1.057958505 1.01622133 1 10.05025518 -7.985611368 24.99956623 1.037996063 1.240183894 0.557744123 0.089434037 199.4157471 346474.5478 0.041085826 0.027693273 1.03E-08 7.985611368 0.202187831 HEEEEWT(ph)DDDLVESL ddPTM_K562_Paclitaxel_30min_R1 1 HEEEEWTDDDLVESL 15 0 D6RHI7;P51946 D6RHI7 CCNH Cyclin-H 1 HEEEEWT(1)DDDLVESL 139.78 4.90E-06 20115000 2775.1 2805.8 3707.4 2772.3 2262 2416.8 2340.4 2804.3 2161.3 3263.7 TRUE FALSE 2813.959962 3112.146733 2771.421017 2594.497086 2570.122696 2845.385546 2784.478682 2566.057211 2368.902522 2598.556149 1.082893654 1.197644598 1.06652343 0.998437955 0.98905798 1.094987133 1.0715484 0.987493463 0.911622604 1 11.34349452 -5.300993687 0.339727096 0.977978049 1.263793299 0.404757939 0.058030483 7.11066457 0.673849929 0.062716858 0.843286117 5.00E-06 5.300993687 0.285815251 HEEEFDLFMR ddPTM_K562_Paclitaxel_30min_R1 1 HEEEFDLFMR 10 0 P51532;A0A2R8Y4C5;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A2R8YGG3;A0A2R8YG32;A0A2R8Y440;A0A2R8Y7F3;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF58;A0A2R8Y6V2;A0A2R8YDA1;A0A0A0MT49;P51532-5;P51532-2;P51532-3;P51532-4;A0A2R8Y523;A0A2R8Y5K3;K7EQF0;A0A2R8YFK5 P51532 SMARCA4 Transcription activator BRG1 0 185.33 0.003565 6654000 1583.2 1496.6 2409.9 2242.6 1865.8 1567.2 1338.8 1735 1575.6 2335.5 FALSE TRUE 1605.369685 1660.003849 1801.49094 2098.769674 2119.953548 1845.120915 1592.830311 1587.60092 1726.94342 1859.523818 0.863323002 0.89270373 0.968791538 1.128659742 1.140051839 0.992254521 0.856579677 0.853767457 0.928701963 1 10.86071751 -7.686075536 7.252093934 0.897849055 1.004651999 0.176762586 0.090894092 0.384011352 30.930949 0.039467953 0.030381086 2.06E-08 7.686075536 0.106802944 HERPAGPGT(ph)PPPDSGPLAKDDR ddPTM_K562_Paclitaxel_30min_R1 1 HERPAGPGTPPPDSGPLAKDDR 22 2 H0YME5;Q9P2K8-2;Q9P2K8 H0YME5 EIF2AK4 Eukaryotic translation initiation factor 2-alpha kinase 4 1 HERPAGPGT(1)PPPDSGPLAKDDR 75.334 0.021688 18023000 2112.7 1959.7 3584.4 2277.7 1784.8 1494.6 1694.2 2236.1 2067.9 2760.8 TRUE FALSE 2142.284318 2173.666673 2679.473889 2131.618517 2027.919977 1759.646325 2015.665606 2046.129348 2266.531035 2198.147445 0.97458627 0.988862999 1.218969135 0.969734092 0.922558667 0.800513327 0.916983804 0.93084263 1.031109647 1 11.10207245 -6.510100878 23.89456161 0.924848005 1.060401792 0.312640373 0.083741984 391.652466 732388.8355 0.024844243 0.034880384 3.09E-07 6.510100878 0.135553787 HFDETVNR ddPTM_K562_Paclitaxel_30min_R1 2 HFDETVNR 8 0 B7Z4L4;P04843 B7Z4L4 RPN1 Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 1 0 ; 137.9 7.46E-05 3476900 1031.45 823.9 1056.48 1127.46 1032.21 875.71 803.25 1124.19 1173.31 1130.03 FALSE TRUE 1045.893482 913.8561883 789.7585576 1055.149762 1172.814477 1031.004873 955.6624943 1028.683043 1286.011668 899.7292657 1.162453554 1.015701304 0.877773557 1.172741404 1.303519316 1.145905677 1.062166732 1.143325089 1.429331819 1 9.81334714 -6.410699551 9.904952305 1.185420775 1.018593158 0.245501237 0.129183848 0.558967376 45.96945015 0.03651411 0.054172047 3.88E-07 6.410699551 -0.166827617 HFEASCGQLS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 1 HFEASCGQLSPAR 13 0 A0A1B0GV70;Q96N21-2;Q96N21 A0A1B0GV70 ENTHD2 AP-4 complex accessory subunit tepsin 1 HFEASCGQLS(1)PAR 87.669 0.014558 13112000 1010.1 901.95 1571.8 1257.4 872.98 912.35 976 1244.8 877.31 1517.6 TRUE FALSE 1024.244516 1000.427951 1174.97965 1176.755992 991.8946557 1074.142462 1161.190905 1139.04647 961.5795454 1208.312287 0.847665399 0.827954794 0.972413889 0.973883991 0.820892634 0.88896097 0.961002315 0.942675567 0.79580383 1 10.23877765 -12.48464009 2.351107585 2.426992733 0.896516012 0.200183118 0.06406358 5249235.107 1148886.402 39461710.76 0.01686259 3.28E-13 12.48464009 -1.530476721 HFFHHADEDDEEEDDS(ph)PPER ddPTM_K562_Paclitaxel_30min_R1 2 HFFHHADEDDEEEDDSPPER 20 0 A0A087WZV0;O43314-2;O43314;D6RFG4 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 HFFHHADEDDEEEDDS(1)PPER;HFFHHADEDDEEEDDS(1)PPER 100.53 0.00045422 50955000 4252.1 3983.3 5219 4471 3236.21 3516.7 2852.65 3621.7 2769.99 4548.9 TRUE FALSE 4311.642519 4418.210165 3901.398902 4184.250071 3677.036591 4140.337368 3393.925446 3314.013979 3036.059916 3621.831683 1.190459109 1.219882797 1.077189457 1.155285623 1.015242262 1.143161177 0.937074316 0.915010489 0.83826643 1 11.82250379 -7.519227821 0.857873512 0.896255455 1.167347751 0.685765318 0.06833365 0.336590017 0.513014407 0.048407041 0.035181238 3.03E-08 7.519227821 0.271092296 HFIDVGAGVIDEDYR ddPTM_K562_Paclitaxel_30min_R1 1 HFIDVGAGVIDEDYR 15 0 H0YNW5;H0YMM5;A0A0C4DGL3;P33316;H0YMP1;H0YKC5;H0YKI0;P33316-2;H0YNJ9 H0YNW5;P33316-2 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 0 110.97 0.0041121 4425500 1458.1 1642.7 1997.3 1755.3 1344.7 1378.8 1436.2 1655.7 1079.1 1973.5 FALSE TRUE 1478.517899 1822.055541 1493.056913 1642.722914 1527.870906 1623.310821 1708.711453 1515.03795 1182.752377 1571.299617 0.940952243 1.159585048 0.950205102 1.04545492 0.97236128 1.033100755 1.087451072 0.964194183 0.752722373 1 10.61774259 -8.529681208 24.75490041 0.870393475 1.027845849 0.344373521 0.082793209 151.4051788 550960.596 0.050797342 0.019300689 2.95E-09 8.529681208 0.157452374 HFKDEDEDEDVAS(ph)PDGLGR ddPTM_K562_Paclitaxel_30min_R1 2 HFKDEDEDEDVASPDGLGR 19 1 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 HFKDEDEDEDVAS(1)PDGLGR;HFKDEDEDEDVAS(1)PDGLGR 168.86 1.14E-12 104492000 2243.3 1895.2 3962.6 2815.1 1768.14 1360.35 1132.84 2078.66 1234.48 2610.4 TRUE FALSE 2274.713121 2102.124345 2962.192621 2634.552086 2008.990603 1601.588972 1347.790476 1902.064858 1353.05732 2078.399047 1.094454467 1.011415179 1.42522805 1.267587228 0.966604852 0.770587811 0.648475315 0.915158646 0.651009402 1 11.02125696 -6.982071018 3.454619919 0.785597503 1.200707184 0.636979166 0.142778471 0.152739127 3.867326426 0.048469757 0.05317857 1.04E-07 6.982071018 0.415109681 HFNYPST(ph)PPSER ddPTM_K562_Paclitaxel_30min_R1 1 HFNYPSTPPSER 12 0 Q9BX63;Q9BX63-2 Q9BX63 BRIP1 Fanconi anemia group J protein 1 HFNYPS(0.244)T(0.749)PPS(0.007)ER 82.651 0.028566 20461000 2227.9 1914.3 2313.4 2215.3 1703.9 1923.8 1503.2 2186.1 1891.4 2306.8 TRUE FALSE 2259.097474 2123.309748 1729.353558 2073.220573 1936.000027 2264.958919 1788.424353 2000.37716 2073.077421 1836.672894 1.229994454 1.156063094 0.941568618 1.128791403 1.054079926 1.233185793 0.973730466 1.089130877 1.128713462 1 10.84287899 -2.110894488 0.011942722 3.62E-08 2.355176187 0.1313972 0.089531869 20931.85581 19.6998961 1631.005118 2308.129736 0.0077465 2.110894488 2.355176151 HFSGLEEAVYR ddPTM_K562_Paclitaxel_30min_R1 2 HFSGLEEAVYR 11 0 P50990-2;P50990;H7C4C8 P50990-2 CCT8 T-complex protein 1 subunit theta 0 ; 204.56 1.48E-08 104941000 7325.8 6057.3 7374.4 7346.4 5505 5913.9 6387 7440.7 5939.8 8512.1 FALSE TRUE 7428.383802 6718.656498 5512.641515 6875.234785 6254.8742 6962.64713 7598.899908 6808.566092 6510.34433 6777.329348 1.09606357 0.991342777 0.813394367 1.01444602 0.922911353 1.027343777 1.121223349 1.004609005 0.960606161 1 12.72650117 -7.297095618 18.18872038 1.029199395 0.962981148 0.108575279 0.077317473 50.02801228 25517.98185 0.028163235 0.024844794 5.05E-08 7.297095618 -0.066218246 HFTEDIQTR ddPTM_K562_Paclitaxel_30min_R1 2 HFTEDIQTR 9 0 H3BLV9;Q96SB4-4;Q96SB4;Q96SB4-3;H7C2I2;H7C521;A8MPP7;A8MPY5;E7ETV6;Q9UPE1-2;Q9UPE1-3;Q9UPE1-4;Q9UPE1;H7C5L6;P78362;P78362-2 H3BLV9;H7C5L6 SRPK1;SRPK3;SRPK2 SRSF protein kinase 1;SRSF protein kinase 3;SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 0 ; 116.52 0.0077175 14847800 746.12 941.88 1114.02 1200.78 817.89 897.44 940.7 959.65 846.37 1095.74 FALSE TRUE 756.567982 1044.717644 832.771873 1123.767345 929.300465 1056.588383 1119.192914 878.1217426 927.6676202 872.4275865 0.8671986 1.197483504 0.954545553 1.288092402 1.065189225 1.211090066 1.282849066 1.006526795 1.063317615 1 9.768891579 -5.251234069 24.36794439 1.125486742 0.867198396 0.302643841 0.114164375 1223.023637 2920219.198 0.027508046 0.359022066 5.61E-06 5.251234069 -0.258288347 HGANVNY(ph)FCR ddPTM_K562_Paclitaxel_30min_R1 2 HGANVNYFCR 10 0 A6NK59-2;A6NK59-3;A6NK59 A6NK59-2 ASB14 Ankyrin repeat and SOCS box protein 14 1 HGANVNY(1)FCR;HGANVNY(1)FCR 75.109 0.017785 0 734.56 729.45 805.77 830.58 579.09 411.69 521.31 703.7 711.38 570.15 TRUE FALSE 744.8461063 809.0938178 602.3433979 777.3103163 657.9718621 484.6974411 620.2258511 643.9162926 779.7112275 453.953117 1.64079963 1.782329028 1.326884595 1.712314085 1.449426906 1.067725769 1.366277326 1.418464305 1.717602982 1 8.826399498 -6.990804765 13.78461487 1.334009059 1.603651656 0.302762171 0.214359562 1.345964554 2007.639134 0.066934275 0.075129568 1.02E-07 6.990804765 0.269642597 HGAPS(ph)PSHPISAPQAAAAAALRR ddPTM_K562_Paclitaxel_30min_R1 1 HGAPSPSHPISAPQAAAAAALRR 23 1 A0A494C1F2;P35658-2;P35658-4;P35658;P35658-3;P35658-5;A0A0A0MSW3;H0YF36 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 HGAPS(0.979)PS(0.021)HPISAPQAAAAAALRR 71.696 0.00090978 85263000 1587.6 1562.2 1793.4 1428.9 1124.7 1207.9 1310.4 1665.1 1191.5 1697.6 TRUE FALSE 1609.831298 1732.766279 1340.63399 1337.25675 1277.903181 1422.104105 1559.041559 1523.639362 1305.948899 1351.628188 1.191031167 1.28198442 0.991865959 0.989367314 0.945454669 1.052141497 1.153454458 1.127262198 0.966204249 1 10.40048263 -5.762055455 24.9999661 1.033747532 1.236507832 0.607076834 0.06691013 11.18308843 453892.6613 0.019139514 0.044116281 1.73E-06 5.762055455 0.2027603 HGAPSPS(ph)HPISAPQAAAAAALRR ddPTM_K562_Paclitaxel_30min_R1 1 HGAPSPSHPISAPQAAAAAALRR 23 1 A0A494C1F2;P35658-2;P35658-4;P35658;P35658-3;P35658-5;A0A0A0MSW3;H0YF36 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 HGAPS(0.473)PS(0.526)HPIS(0.001)APQAAAAAALRR 52.321 0.014461 90371000 1127.3 1150.3 1192.9 966.88 871.27 1048.5 947.34 1304.9 897.01 1542.5 TRUE FALSE 1143.085678 1275.893644 891.7376414 904.8686444 989.9517247 1234.436753 1127.09282 1194.0406 983.1718184 1228.137653 0.930747197 1.038884884 0.726089326 0.736781127 0.806059257 1.005128985 0.917725156 0.972236782 0.80053878 1 10.26225656 -7.249364439 24.48952441 0.936053194 0.845413374 0.17065106 0.100583805 1202.559184 2438944.498 0.035961058 0.035694497 5.63E-08 7.249364439 -0.090639819 HGESAWNLENR ddPTM_K562_Paclitaxel_30min_R1 2 HGESAWNLENR 11 0 P18669 P18669 PGAM1 Phosphoglycerate mutase 1 0 ; 172.17 0.00056081 67255000 3890.9 3449.5 4552 3957.6 3582.8 2835.5 3157.5 4384.4 3417.6 5022.9 FALSE TRUE 3945.384604 3826.128075 3402.791302 3703.77725 4070.838017 3338.336113 3756.619142 4011.917853 3745.87575 3999.230223 0.986536004 0.956716133 0.850861569 0.926122539 1.017905394 0.83474467 0.939335555 1.003172518 0.93664919 1 11.96550662 -8.019537281 24.06087419 0.97619734 0.92684771 0.148328214 0.054646125 968.9813031 1193330.935 0.025548509 0.015042835 9.56E-09 8.019537281 -0.04934963 HGGS(ph)PQPLAT(ph)TPLSQEPVNPPSEAS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 HGGS(1)PQPLAT(0.861)T(0.139)PLSQEPVNPPS(0.095)EAS(0.839)PT(0.065)R 120.33 1.63E-12 10048000 829.91 914.7 1318.8 957.8 739.21 911.19 639.9 1147.9 393.61 1122.5 TRUE FALSE 841.5313005 1014.570039 985.8526293 896.370995 839.9029169 1072.776753 761.3176845 1050.37873 431.4179992 893.7338838 0.941590462 1.135203731 1.103071784 1.002950667 0.939768461 1.200331298 0.851839343 1.175270121 0.482714158 1 9.803701512 -8.745947959 24.99999932 0.741356839 1.042774763 0.371754999 0.157239112 197.6155246 318914.4155 0.097106266 0.036415684 1.79E-09 8.745947959 0.301417924 HGGS(ph)PQPLATTPLSQEPVNPPS(ph)EASPTR ddPTM_K562_Paclitaxel_30min_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 HGGS(0.995)PQPLAT(0.002)T(0.003)PLSQEPVNPPS(0.435)EAS(0.282)PT(0.282)R 89.953 6.35E-06 108170000 532.28 536.17 833.85 706.18 629.15 412.19 507.81 703.69 409.01 662.43 TRUE FALSE 539.7335622 594.7108538 623.3342546 660.8887755 714.8508816 485.2861091 604.1642966 643.9071422 448.297238 527.4264024 1.023334364 1.127571261 1.181841204 1.253044543 1.35535665 0.920102041 1.145494981 1.220847381 0.849971173 1 9.042825983 -7.271377679 24.99461068 1.048474329 1.18810562 0.280438199 0.126649674 1116.463388 2807874.692 0.04568871 0.040789924 5.35E-08 7.271377679 0.139631291 HGGS(ph)PQPLATTPLSQEPVNPPSEAS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 3 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 HGGS(0.999)PQPLATT(0.001)PLSQEPVNPPS(0.186)EAS(0.681)PT(0.133)R;HGGS(0.996)PQPLAT(0.002)T(0.002)PLS(0.003)QEPVNPPS(0.12)EAS(0.705)PT(0.173)R;HGGS(1)PQPLATTPLSQEPVNPPS(0.162)EAS(0.54)PT(0.298)R 110.67 2.77E-09 146533000 1680.56 1940.68 2965.07 2409.82 1899.77 1426.22 1530.23 2185.55 1148.37 2414.2 TRUE FALSE 1704.093025 2152.570005 2216.501407 2255.264931 2158.550837 1679.140092 1820.583154 1999.873886 1258.67607 1922.184715 0.886539682 1.119855958 1.153115718 1.173282106 1.122967434 0.873558134 0.947142665 1.04041712 0.654815357 1 10.90853127 -7.259143834 24.99998106 0.908459972 1.100752032 0.372805002 0.121486762 225.4151576 2454926.162 0.040611175 0.038770548 5.51E-08 7.259143834 0.19229206 HGGSPQPLATTPLSQEPVNPPS(ph)EASPTR ddPTM_K562_Paclitaxel_30min_R1 1 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 HGGSPQPLATTPLSQEPVNPPS(0.622)EAS(0.25)PT(0.129)R 170.15 3.58E-36 21516000 808.83 726.75 1133.7 949.38 813.88 799.76 792.11 724.44 486.63 1254.4 TRUE FALSE 820.1561155 806.0990227 847.4834136 888.4910161 924.7442351 941.5862068 942.4087374 662.8943002 533.3729858 998.7525914 0.821180463 0.807105813 0.848541892 0.889600712 0.92589921 0.942762216 0.943585774 0.663722233 0.534039151 1 9.963983531 -8.266296131 24.96807432 0.699160508 0.882689927 0.2403308 0.117864155 471.6762897 2424817.893 0.060166829 0.030359587 5.42E-09 8.266296131 0.183529419 HGGSPQPLATTPLSQEPVNPPSEAS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 2 HGGSPQPLATTPLSQEPVNPPSEASPTR 28 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 HGGSPQPLATTPLSQEPVNPPS(0.113)EAS(0.815)PT(0.072)R;HGGSPQPLATTPLSQEPVNPPS(0.209)EAS(0.581)PT(0.209)R 149.85 8.80E-32 59004000 2101.45 2363.92 3323.3 3262 2445.09 2206.05 2296.9 2539.8 1486.17 3450.3 TRUE FALSE 2130.876784 2622.02078 2484.291813 3052.78992 2778.152654 2597.261993 2732.724784 2324.028137 1628.923269 2747.126966 0.775674663 0.954459263 0.904323624 1.11126641 1.011293867 0.945446652 0.994757366 0.845984975 0.592955218 1 11.42370787 -10.97219761 4.767581596 1.000000733 0.916941714 0.035383085 0.136035839 207897558.3 0.005901885 2385.680909 0.034239028 1.07E-11 10.97219761 -0.083059018 HGGVCAPAAVAT(ph)SPPGAIPK ddPTM_K562_Paclitaxel_30min_R1 2 HGGVCAPAAVATSPPGAIPK 20 0 A0A494BZT8;Q9Y6A5;E7EMT0 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 HGGVCAPAAVAT(0.5)S(0.5)PPGAIPK;HGGVCAPAAVAT(0.5)S(0.5)PPGAIPK 104.26 0.0016707 93859000 4058.4 3810.8 7247.2 5007.8 3924.3 3449.92 3400.2 4279.4 3631.52 6048.4 TRUE FALSE 4115.230121 4226.876031 5417.554728 4686.622122 4458.856099 4061.714873 4045.3702 3915.838259 3980.343722 4815.73276 0.854538723 0.877722299 1.124969968 0.973189825 0.925893591 0.843426136 0.84003212 0.81313446 0.826529195 1 12.23353962 -7.106920047 3.416864052 0.85146173 0.962959018 0.209064472 0.083575326 0.355094342 7.72165848 0.029753143 0.030268425 7.82E-08 7.106920047 0.111497288 HGGVCAPAAVATS(ph)PPGAIPK ddPTM_K562_Paclitaxel_30min_R1 2 HGGVCAPAAVATSPPGAIPK 20 0 A0A494BZT8;Q9Y6A5;E7EMT0 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 HGGVCAPAAVAT(0.052)S(0.948)PPGAIPK;HGGVCAPAAVAT(0.33)S(0.67)PPGAIPK 100.59 0.00049195 148070000 4896 3877.8 8235.9 5791.8 3861.9 4022.3 3485.3 5418.4 3815.7 6374.9 TRUE FALSE 4964.559105 4301.191318 6156.645185 5420.339871 4387.956163 4735.598429 4146.617481 4958.073099 4182.215034 5075.691881 0.978104901 0.847409854 1.212966691 1.067901677 0.864504045 0.932995647 0.816956107 0.976827045 0.823969447 1 12.30938878 -6.76324482 24.99751673 0.898626777 1.027109 0.265575075 0.100936384 67.00393395 927718.5018 0.031298213 0.037337848 1.72E-07 6.76324482 0.128482224 HGIVEDWDLMER ddPTM_K562_Paclitaxel_30min_R1 2 HGIVEDWDLMER 12 0 F8WDR7;B4DXW1;P61158 F8WDR7 ACTR3 Actin-related protein 3 0 ; 147.58 0.00056908 11985800 3959.6 4370.1 4493 4494.3 3783.4 3594.1 4316.2 4538.4 3372.9 5775.1 FALSE TRUE 4015.046616 4847.242297 3358.686581 4206.055714 4298.763133 4231.463171 5135.176418 4152.834592 3696.882116 4598.13145 0.873190917 1.054176539 0.730445969 0.914731508 0.934893485 0.920257113 1.11679635 0.903156997 0.803996614 1 12.16683199 -6.765480931 3.507017309 0.950152352 0.891875923 0.062392173 0.103828545 0.776751712 20.21605545 0.033551078 0.041379133 1.72E-07 6.765480931 -0.058276429 HGLAT(ph)LPS(ph)LVS(ph)IS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 HGLATLPSLVSISR 14 0 P08559-4;Q5JPU1 P08559-4 PDHA1 "Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial" 4 HGLAT(1)LPS(1)LVS(1)IS(1)R 53.995 0.030736 0 374.4 304.26 410.97 327.43 351.25 359.28 283.46 170.47 305.76 437.48 TRUE FALSE 379.6427551 337.4801357 307.2155407 306.4301053 399.0961967 422.9932635 337.2450552 155.9875095 335.1296142 348.3213359 1.089921047 0.968875865 0.881988868 0.879733952 1.145770171 1.214376554 0.96820097 0.447826456 0.962127724 1 8.444275035 -8.022202775 24.95897015 0.764588968 1.025039422 0.250643154 0.171506262 917.1800691 1031032.466 0.079604394 0.046459662 9.50E-09 8.022202775 0.260450454 HGLLLPAS(ph)PVR ddPTM_K562_Paclitaxel_30min_R1 2 HGLLLPASPVR 11 0 Q96E09 Q96E09 FAM122A Protein FAM122A 1 HGLLLPAS(1)PVR;HGLLLPAS(1)PVR 161.87 0.00073222 323140000 3598.8 3666.5 3998.1 4032.4 3029.2 3007.1 2981.8 3375.5 2690.9 4268.6 TRUE FALSE 3649.194303 4066.820869 2988.730207 3773.779912 3441.828325 3540.366963 3547.580984 3088.730206 2949.372968 3398.656977 1.073716567 1.196596449 0.87938566 1.110373874 1.012702473 1.041695878 1.043818487 0.908809046 0.867805427 1 11.73074904 -8.249097252 7.928352151 0.91606672 1.050727051 0.333505278 0.081068006 0.172781342 79.96202173 0.039067861 0.021337904 5.64E-09 8.249097252 0.134660331 HGLQLGAQS(ph)PGR ddPTM_K562_Paclitaxel_30min_R1 2 HGLQLGAQSPGR 12 0 Q8N1G0;A6PVV7 Q8N1G0 ZNF687 Zinc finger protein 687 1 HGLQLGAQS(1)PGR;HGLQLGAQS(1)PGR 101.72 0.006645 98189000 7421.8 7096.4 8868.1 8047.6 7061.4 6371.4 6534 8520.4 4912.9 9340.3 TRUE FALSE 7525.728098 7871.20895 6629.238476 7531.462956 8023.28223 7501.278331 7773.79239 7796.538837 5384.805996 7436.741733 1.011965773 1.058421717 0.891417063 1.012736925 1.078870629 1.008678074 1.045322356 1.048381014 0.72408135 1 12.86045496 -8.731893885 24.9999977 0.862040279 1.018760951 0.393035164 0.078252932 168.9110102 142925.0815 0.050046174 0.018909735 1.85E-09 8.731893885 0.156720672 HGLTSGSAS(ph)PPPPALPLYPDPVR ddPTM_K562_Paclitaxel_30min_R1 2 HGLTSGSASPPPPALPLYPDPVR 23 0 Q92610;H0YM74 Q92610 ZNF592 Zinc finger protein 592 1 HGLT(0.011)S(0.045)GS(0.182)AS(0.762)PPPPALPLYPDPVR;HGLT(0.001)S(0.002)GS(0.04)AS(0.957)PPPPALPLYPDPVR 106.89 2.63E-05 95060000 2365.64 2033.08 2959.1 2813.9 2344.77 2356.83 2266.19 3103.6 1422.39 3176.7 TRUE FALSE 2398.766259 2255.05855 2212.038607 2633.429049 2664.167371 2774.780709 2696.187722 2839.929808 1559.016915 2529.286796 0.948396308 0.891578825 0.8745701 1.041174553 1.053327513 1.097060528 1.065987347 1.122818421 0.616385978 1 11.30451492 -6.261913622 24.99913373 1.013727369 0.903521449 0.086044536 0.136000398 93.1558334 4910663.673 0.037323038 0.059299111 5.47E-07 6.261913622 -0.11020592 HGPSSSHMHNTGADS(ph)PSCSNGVASTK ddPTM_K562_Paclitaxel_30min_R1 1 HGPSSSHMHNTGADSPSCSNGVASTK 26 0 A0A0D9SEU5;Q6VN20;R4GMX8;Q6VN20-2;Q6VN20-3 A0A0D9SEU5 RANBP10 Ran-binding protein 10 1 HGPSSSHMHNTGADS(0.792)PS(0.2)CS(0.007)NGVASTK 74.278 0.00016553 3557600 3033.7 2707.8 4235.3 3147.9 2121.1 2008.8 1548.3 2441.6 2013.2 2660.4 TRUE FALSE 3076.18116 3003.446761 3166.046133 2946.007783 2410.029731 2365.032475 1842.081842 2234.17084 2206.576855 2118.20902 1.452255718 1.41791803 1.494680697 1.390801265 1.137767665 1.116524598 0.869641204 1.054745221 1.041718185 1 11.04862924 -6.88130712 1.754449957 1.004872503 1.458069944 0.918825819 0.059792984 0.091057362 0.576264307 0.022146272 0.026746883 1.31E-07 6.88130712 0.45319744 HGPSSSHMHNTGADSPS(ph)CSNGVASTK ddPTM_K562_Paclitaxel_30min_R1 1 HGPSSSHMHNTGADSPSCSNGVASTK 26 0 A0A0D9SEU5;Q6VN20;R4GMX8;Q6VN20-2;Q6VN20-3 A0A0D9SEU5 RANBP10 Ran-binding protein 10 1 HGPS(0.004)S(0.004)S(0.002)HMHNT(0.008)GADS(0.196)PS(0.567)CS(0.218)NGVASTK 59.789 0.0038687 3229300 1924.4 1780 3519.5 2153.6 1675.2 1263.8 1247.8 1775.1 1469.7 2205.8 TRUE FALSE 1951.347537 1974.34642 2630.958696 2015.477735 1903.390601 1487.917185 1484.563536 1624.294175 1610.871252 1756.256749 1.111083296 1.124178695 1.498049017 1.147598571 1.08377696 0.847209376 0.845299833 0.924861457 0.91721854 1 10.77828805 -6.951409224 2.461401846 0.899684421 1.237098175 0.643100669 0.110070298 0.18244037 2.240449928 0.039388889 0.044312988 1.12E-07 6.951409224 0.337413754 HGQEEAAQS(ph)PYRAVVQIF ddPTM_K562_Paclitaxel_30min_R1 2 HGQEEAAQSPYRAVVQIF 18 1 J3KQ72;Q9NRD1 J3KQ72 FBXO6 F-box only protein 6 1 HGQEEAAQS(0.996)PY(0.004)RAVVQIF;HGQEEAAQS(0.987)PY(0.013)RAVVQIF 82.8 0.0052603 19476000 4740.6 4311.6 5371.9 4075.9 3370.9 3849.7 2595.5 3816.9 6085.4 3849.2 TRUE FALSE 4806.983026 4782.355069 4015.697406 3814.490017 3830.07365 4532.390243 3087.982576 3492.630521 6669.92986 3064.730927 1.568484523 1.560448595 1.310293628 1.244641082 1.249725911 1.478886842 1.007586848 1.139620607 2.176350883 1 11.5815447 -5.759343037 22.06478727 1.319349199 1.564466982 0.083035379 0.316532651 30.12736515 316988.816 0.079393901 0.189213128 1.74E-06 5.759343037 0.245117783 HGS(ph)GPPSSGGGLYR ddPTM_K562_Paclitaxel_30min_R1 1 HGSGPPSSGGGLYR 14 0 Q9HC52 Q9HC52 CBX8 Chromobox protein homolog 8 1 HGS(1)GPPSSGGGLYR 81.904 0.0204 17632000 372.93 159.79 549.78 313.03 248.28 315.2 228.54 531.04 326.72 295.91 TRUE FALSE 378.1521706 177.2364126 410.9812394 292.9536569 282.0999394 371.0962944 271.9042719 485.9248374 358.1029158 235.6033796 1.605037123 0.752266003 1.744377522 1.243418738 1.197350988 1.575089012 1.15407628 2.062469724 1.51993964 1 7.880216424 HGS(ph)PEFCGILGER ddPTM_K562_Paclitaxel_30min_R1 1 HGSPEFCGILGER 13 0 Q15464 Q15464 SHB SH2 domain-containing adapter protein B 1 HGS(1)PEFCGILGER 99.238 0.0064738 5918500 1546 1669.3 2246.2 1917.6 1521.9 1531.7 1630.4 2279.7 1038.4 2728 TRUE FALSE 1567.64877 1851.559819 1679.119029 1794.613719 1729.208546 1803.325489 1939.759889 2086.025256 1138.14296 2172.032103 0.72174291 0.852455089 0.773063634 0.826237198 0.796124764 0.830248083 0.893062256 0.960402589 0.523999143 1 11.08482971 -7.351238312 4.375666638 0.843392611 0.797776405 0.035922815 0.123669745 1.078721627 36.59248242 0.043098019 0.037887036 4.45E-08 7.351238312 -0.045616206 HGSLGFLPR ddPTM_K562_Paclitaxel_30min_R1 2 HGSLGFLPR 9 0 F8WCR1;H7C3M2;H7C422;P39023 F8WCR1 RPL3 60S ribosomal protein L3 0 ; 146.69 0.00078215 16130100 11509.3 11855 14130.3 13682.7 11919.6 10706 10513.5 12253.6 11691.3 13512.1 FALSE TRUE 11670.46571 13149.36899 10562.931 12805.15286 13543.25132 12604.55878 12508.38174 11212.5802 12814.3016 10758.3266 1.084784478 1.2222504 0.981837733 1.190255077 1.258862258 1.171609605 1.162669828 1.042223443 1.191105464 1 13.39316607 -11.72574476 6.803342012 0.998018623 1.145485388 0.225786437 0.080584529 0.002444688 9.85E-05 0.078762186 0.018864057 1.88E-12 11.72574476 0.147466766 HGSRITRCIT(ph)LSNAIVNAGLT(ph)S(ph)FK ddPTM_K562_Paclitaxel_30min_R1 1 HGSRITRCITLSNAIVNAGLTSFK 24 2 H0Y3X7 H0Y3X7 HFM1 3 HGS(0.034)RIT(0.289)RCIT(0.676)LS(0.001)NAIVNAGLT(1)S(1)FK 55.344 0.016939 0 576.48 560.05 698.86 717.81 622.28 512.27 712.21 653.16 492.72 665.12 TRUE FALSE 584.5524986 621.198153 522.4241496 671.7728794 707.0450713 603.1138919 847.3481295 597.6699811 540.0479575 529.5681789 1.103828594 1.173027719 0.986509708 1.268529542 1.335135115 1.138878648 1.600073727 1.128598743 1.019789291 1 9.048672625 -6.283465359 24.65307524 1.236487566 1.096312558 0.091906048 0.168820414 1396.634164 1563210.648 0.04777741 0.070929258 5.21E-07 6.283465359 -0.140175008 HGTDLWIDNMSSAVPNHS(ph)PEKK ddPTM_K562_Paclitaxel_30min_R1 2 HGTDLWIDNMSSAVPNHSPEKK 22 1 Q8N6H7;E9PIY6;H0YF45;E9PJT7;E9PK28;E9PN48 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 1 HGTDLWIDNMS(0.03)S(0.042)AVPNHS(0.928)PEKK;HGTDLWIDNMSSAVPNHS(0.999)PEKK 139.11 8.84E-17 77850000 7999.5 5550.9 15680.9 7378.7 5002.6 3813.7 3789.5 7292.6 4322.8 10185.1 TRUE FALSE 8111.517681 6156.966034 11722.06286 6905.463208 5684.038815 4490.006148 4508.537842 6673.048111 4738.024255 8109.371029 1.000264712 0.759240885 1.445495935 0.851541159 0.700922278 0.553681183 0.555966403 0.822881095 0.584265319 1 12.98537431 -6.514657579 11.04288453 0.687969878 1.055946956 0.396382852 0.201203913 0.296428311 380.7907472 0.057158965 0.078602428 3.06E-07 6.514657579 0.367977078 HGYIGEFEIIDDHR ddPTM_K562_Paclitaxel_30min_R1 3 HGYIGEFEIIDDHR 14 0 I3L3P7;I3L246;H3BN98;P62244 I3L3P7 RPS15A 40S ribosomal protein S15a 0 ;; 176.91 7.40E-06 95152000 7712.8 7541.1 10098.5 7965.3 6753.9 6744.5 6027.06 7737.1 3862.2 8462 FALSE TRUE 7820.802996 8364.4628 7549.008778 7454.441309 7673.895524 7940.542378 7170.663172 7079.785062 4233.181567 6737.439755 1.160797466 1.24148981 1.120456591 1.106420477 1.138992823 1.178569704 1.064300897 1.050812374 0.628307149 1 12.71798475 -8.583821316 6.229684812 0.81489065 1.14105551 0.65636314 0.094241743 0.114930477 8.647399786 0.062352547 0.022986889 2.61E-09 8.583821316 0.326164859 HHFETLT(ph)ESPCR ddPTM_K562_Paclitaxel_30min_R1 1 HHFETLTESPCR 12 0 O43379;O43379-4 O43379 WDR62 WD repeat-containing protein 62 1 HHFET(0.04)LT(0.598)ES(0.362)PCR 134.4 0.00046153 24623000 1371.6 1200 1830.1 1494.7 1217.3 1175.3 1278.8 1446.6 905.71 1770.6 TRUE FALSE 1390.806632 1331.020058 1368.068621 1398.836632 1383.116869 1383.722953 1521.445624 1323.702301 992.7074923 1409.750748 0.986562081 0.944152759 0.970432981 0.992258124 0.981107384 0.981537307 1.07923023 0.938961942 0.704172347 1 10.46122439 -8.534418219 24.88978842 0.841913092 0.989054412 0.355245019 0.073888237 202.6047201 436992.8252 0.045764733 0.017328301 2.92E-09 8.534418219 0.147141319 HHFETLTES(ph)PCR ddPTM_K562_Paclitaxel_30min_R1 1 HHFETLTESPCR 12 0 O43379;O43379-4 O43379 WDR62 WD repeat-containing protein 62 1 HHFET(0.195)LT(0.324)ES(0.481)PCR 128.74 0.00076439 24093000 1370.2 1512 1935.8 1349.3 1379.8 1227.1 918.17 1409.8 999.22 1921 TRUE FALSE 1389.387027 1677.085273 1447.083348 1262.761937 1567.75212 1444.708956 1092.387964 1290.02869 1095.199546 1529.499146 0.908393464 1.096493109 0.946115827 0.825604866 1.025010131 0.944563428 0.714212863 0.843432109 0.7160511 1 10.57884359 -7.652157244 7.6769081 0.805862172 0.96190735 0.316533992 0.099711211 0.255208231 16.3917522 0.036999529 0.028559969 2.23E-08 7.652157244 0.156045178 HHGDVMDLQFFDQER ddPTM_K562_Paclitaxel_30min_R1 2 HHGDVMDLQFFDQER 15 0 B4E301;F5H0E3;B4DVD1;Q8NFH3-2;Q8NFH3 B4E301 NUP43 Nucleoporin Nup43 0 ; 100.11 0.0041882 18744000 1524.93 1670.94 1860.45 1667.05 1338.01 1410.3 1339.15 1451.66 1422.97 2229.6 FALSE TRUE 1546.283725 1853.37888 1390.756388 1560.132874 1520.269615 1660.396903 1593.246722 1328.332422 1559.652626 1775.206296 0.871044525 1.044035774 0.783433672 0.878845956 0.856390391 0.935326169 0.897499477 0.748269328 0.878575425 1 10.79377097 -5.762887976 24.99999534 0.866119742 0.957540126 0.159201203 0.077329572 57.76970065 997078.1962 0.019244484 0.043874959 1.73E-06 5.762887976 0.091420385 HHIIGDNPNS(ph)SDYPAPR ddPTM_K562_Paclitaxel_30min_R1 1 HHIIGDNPNSSDYPAPR 17 0 Q5T321;A0A0D9SF28;F5GXV7;Q8NFP9-2;Q8NFP9-3;Q8NFP9 Q5T321 NBEA Neurobeachin 1 HHIIGDNPNS(0.5)S(0.5)DYPAPR 91.592 0.0056353 48642000 3046.6 3185.2 3552.6 3233.1 3274.5 3326.4 2843.8 3533.1 2546.4 3600.1 TRUE FALSE 3089.2618 3532.970908 2655.702192 3025.743437 3720.542338 3916.290335 3383.396204 3232.941102 2790.993098 2866.397644 1.077750607 1.232547381 0.926494688 1.055590959 1.297985416 1.36627601 1.180365261 1.127875998 0.97369362 1 11.48502305 -8.684460648 4.189299542 0.985352868 1.164259786 0.253833544 0.118357048 0.327344614 10.47969483 0.103866167 0.033829237 2.07E-09 8.684460648 0.178906917 HHIIGDNPNSS(ph)DYPAPR ddPTM_K562_Paclitaxel_30min_R1 1 HHIIGDNPNSSDYPAPR 17 0 Q5T321;A0A0D9SF28;F5GXV7;Q8NFP9-2;Q8NFP9-3;Q8NFP9 Q5T321 NBEA Neurobeachin 1 HHIIGDNPNS(0.102)S(0.897)DY(0.002)PAPR 78.508 0.018632 49588000 1727.2 1651.1 2021.2 1942 1683 1237.9 1512.8 1849.4 1502.5 1865 TRUE FALSE 1751.386129 1831.372682 1510.923062 1817.448812 1912.253093 1457.424184 1799.845903 1692.281926 1646.821838 1484.911976 1.179454511 1.233320702 1.017516921 1.223943803 1.287788855 0.981488605 1.21208929 1.139651342 1.109036673 1 10.5361617 -15 0.173364513 0.369539262 1.190352778 0.231642968 0.089826004 204.1311347 1.938708435 43.98109045 0.306772579 1.00E-15 15 0.820813517 HHQT(ph)PDPHQEENHSPEVIGTWSLR ddPTM_K562_Paclitaxel_30min_R1 1 HHQTPDPHQEENHSPEVIGTWSLR 24 0 Q9BXL5 Q9BXL5 HEMGN Hemogen 1 HHQT(0.536)PDPHQEENHS(0.459)PEVIGT(0.002)WS(0.003)LR 50.132 0.015883 128340000 1140.9 1200.9 1473.4 1249.8 929.62 989.34 982.1 1212 1198.4 1444.7 TRUE FALSE 1156.87612 1332.018323 1101.421947 1169.643422 1056.249983 1164.785558 1168.448348 1109.033035 1313.511675 1150.269347 1.005743675 1.158005581 0.957533946 1.016843077 0.918263175 1.012619836 1.015804125 0.964150734 1.141916611 1 10.16775601 -5.77652578 24.99878585 1.000324127 1.081874678 0.188231727 0.064944291 310.7298164 514893.3525 0.016180172 0.033884386 1.67E-06 5.77652578 0.081550551 HHQTPDPHQEENHS(ph)PEVIGTWSLR ddPTM_K562_Paclitaxel_30min_R1 1 HHQTPDPHQEENHSPEVIGTWSLR 24 0 Q9BXL5 Q9BXL5 HEMGN Hemogen 1 HHQT(0.008)PDPHQEENHS(0.99)PEVIGT(0.002)WS(0.001)LR 50.237 0.012528 21295000 1174.3 1271.5 1551.8 1412.5 1081.8 938.1 939.47 927.11 1188.9 1421 TRUE FALSE 1190.743823 1410.32667 1160.028898 1321.908572 1229.159475 1104.458863 1117.729528 848.3462187 1303.099157 1131.39942 1.052452213 1.246532962 1.025304483 1.16838364 1.086406315 0.976188289 0.987917714 0.74982027 1.151758728 1 10.14389262 -7.234761552 2.664685429 0.954026219 1.125917533 0.303017589 0.107738701 0.31281585 4.409810733 0.038070634 0.035926627 5.82E-08 7.234761552 0.171891314 HIDFSLR ddPTM_K562_Paclitaxel_30min_R1 1 HIDFSLR 7 0 P46781 P46781 RPS9 40S ribosomal protein S9 0 183.9 5.30E-11 35693000 1187.5 808.33 1192.3 999.47 993.56 1059.3 1255.9 1248.5 1017.9 1553.1 FALSE TRUE 1204.128664 896.586203 891.2891188 935.3684677 1128.899693 1247.151982 1494.200469 1142.432132 1115.673843 1236.577367 0.973759261 0.725054676 0.720771011 0.756417263 0.912922816 1.008551518 1.208335611 0.92386628 0.902227287 1 10.27213679 -6.987511486 3.158416287 1.01467982 0.784485311 0.4945048 0.101708 0.213764172 4.417129159 0.035871203 0.039242445 1.03E-07 6.987511486 -0.230194508 HIDLVEGDEGR ddPTM_K562_Paclitaxel_30min_R1 1 HIDLVEGDEGR 11 0 P19367-4;P19367-2;P19367;P19367-3 P19367-4 HK1 Hexokinase-1 0 92.247 0.022057 0 3796.4 3452.5 3952.4 3757.2 3309.8 3343.5 3211.2 3431.8 3071.4 4170.3 FALSE TRUE 3849.561313 3829.455626 2954.567737 3516.230009 3760.650795 3936.42278 3820.508436 3140.247169 3366.421693 3320.390571 1.159370029 1.153314812 0.889825361 1.058980844 1.132592903 1.185530044 1.150620192 0.945746322 1.013863165 1 11.69713724 -8.264789324 24.96183919 0.984853555 1.10042102 0.306233926 0.081079865 414.3510557 3087461.821 0.046298622 0.023676697 5.44E-09 8.264789324 0.115567465 HIDMVEGDEGR ddPTM_K562_Paclitaxel_30min_R1 1 HIDMVEGDEGR 11 0 E9PB90;P52789 E9PB90 HK2 Hexokinase;Hexokinase-2 0 99.215 0.020966 5775700 2245.3 1802.7 2517.3 2299.1 2113.8 2003.2 2023.3 2335.9 1871.7 2163.4 FALSE TRUE 2276.741127 1999.524882 1881.776481 2151.646016 2401.735347 2358.439394 2407.210613 2137.450715 2051.485148 1722.497892 1.321767148 1.160828638 1.092469541 1.249142902 1.394332822 1.369197259 1.3975115 1.240901788 1.190994286 1 10.7502865 -9.120693798 2.132921777 1.000906102 1.278595142 0.450532607 0.093791066 0.526944531 4.955292003 0.103538298 0.028591339 7.57E-10 9.120693798 0.27768904 HIDSSPYSPAYLS(ph)PPPESSWRR ddPTM_K562_Paclitaxel_30min_R1 1 HIDSSPYSPAYLSPPPESSWRR 22 1 Q53ET0;H0YDQ8 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 HIDSSPY(0.001)S(0.027)PAY(0.183)LS(0.784)PPPES(0.003)S(0.003)WRR 67.418 0.0034475 6567100 494.09 616.66 718.3 484.44 615.35 735.92 726.35 683.55 840.31 900.92 TRUE FALSE 501.0087844 683.9890242 536.9562812 453.3701867 699.171088 866.4250792 864.1711207 625.4781609 921.0255301 717.3120095 0.698453083 0.953544643 0.748567254 0.632040424 0.974709859 1.207877559 1.20473533 0.87197503 1.283995692 1 9.486456975 -6.969828505 5.824235385 1.109957915 0.772807945 0.613471962 0.132838622 0.123518716 12.18041175 0.041431337 0.046330158 1.07E-07 6.969828505 -0.33714997 HIELGVT(ph)GGGSPENGDGALLAITPPAVK ddPTM_K562_Paclitaxel_30min_R1 1 HIELGVTGGGSPENGDGALLAITPPAVK 28 0 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2 A0A0A0MS59 SRCAP Helicase SRCAP 1 HIELGVT(0.544)GGGS(0.455)PENGDGALLAIT(0.001)PPAVK 54.255 0.0089487 5320400 1618.2 1364.1 2035.3 1498 1439 1068.2 822.62 1347.8 1188.7 1958.2 TRUE FALSE 1640.859793 1513.037051 1521.463343 1401.924985 1635.016162 1257.630272 978.7078506 1233.295977 1302.879946 1559.117765 1.052428386 0.970444366 0.975848891 0.899178379 1.048680349 0.806629428 0.627731832 0.791021695 0.835652043 1 10.60651419 -7.32689906 6.978071569 0.78644786 0.982311378 0.454649408 0.09483501 0.218600414 19.95429085 0.032823854 0.028956701 4.71E-08 7.32689906 0.195863518 HIEPELAGRDS(ph)PIR ddPTM_K562_Paclitaxel_30min_R1 2 HIEPELAGRDSPIR 14 1 P86791;P86790 P86791 CCZ1;CCZ1B Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B 1 HIEPELAGRDS(1)PIR;HIEPELAGRDS(1)PIR 130.87 5.19E-05 65019000 2820.1 2957.9 3783.5 3322.3 2908.59 2847.2 2483.9 3584.3 1612.28 3182 TRUE FALSE 2859.590101 3280.853525 2828.308631 3109.222548 3304.789201 3352.110943 2955.207058 3279.791343 1767.146698 2533.506653 1.128708345 1.294985162 1.116361241 1.227240727 1.304432809 1.323111166 1.166449298 1.294565909 0.697510186 1 11.3069199 -8.753153548 24.99995663 0.848755062 1.233338176 0.71089467 0.097752408 78.48742369 236816.8507 0.064424516 0.023441428 1.77E-09 8.753153548 0.384583114 HIEPELAGRDS(ph)PIRAEMPGNLQHYGR ddPTM_K562_Paclitaxel_30min_R1 4 HIEPELAGRDSPIRAEMPGNLQHYGR 26 2 P86791;P86790 P86791 CCZ1;CCZ1B Vacuolar fusion protein CCZ1 homolog;Vacuolar fusion protein CCZ1 homolog B 1 HIEPELAGRDS(1)PIRAEMPGNLQHYGR;HIEPELAGRDS(1)PIRAEMPGNLQHYGR;HIEPELAGRDS(0.999)PIRAEMPGNLQHY(0.001)GR;HIEPELAGRDS(1)PIRAEMPGNLQHYGR 85.397 2.85E-05 657620000 4252.3 4131.29 4640.51 4395.72 3893.28 3491.8 4384.7 4623.8 4783.64 5369.7 TRUE FALSE 4311.845319 4582.358213 3468.955857 4113.798194 4423.61065 4111.021703 5216.673935 4230.979329 5243.129996 4275.352193 1.008535701 1.071808358 0.811384817 0.962212704 1.034677484 0.961563286 1.220174082 0.989621238 1.226362124 1 12.06182756 -7.728277518 24.99985869 1.108174545 0.974119493 0.315605961 0.096667323 225.9094984 170307.0318 0.035803662 0.027731541 1.87E-08 7.728277518 -0.134055052 HIGLVYS(ph)GMGPDYR ddPTM_K562_Paclitaxel_30min_R1 1 HIGLVYSGMGPDYR 14 0 A0A024RA52;P25787 A0A024RA52 PSMA2 Proteasome subunit alpha type;Proteasome subunit alpha type-2 1 HIGLVY(0.381)S(0.619)GMGPDYR 127.83 0.0002651 4255100 719.01 550.1 753.89 842.56 705.88 588.08 585.7 828.76 555.8 716.52 TRUE FALSE 729.0783583 610.1617783 563.5611455 788.5219728 802.0328066 692.3677309 696.8335174 758.351665 609.1870734 570.4928307 1.277979878 1.069534524 0.987849654 1.382176831 1.405859572 1.213630906 1.221458851 1.329292191 1.067825993 1 9.156064946 -4.287877886 13.71812951 1.207684104 1.19440586 0 0.148250406 0 0 0.034697358 0 5.15E-05 4.287877886 -0.013278243 HIHIT(ph)QATET(ph)T(ph)TTRHKR ddPTM_K562_Paclitaxel_30min_R1 1 HIHITQATETTTTRHKR 17 2 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 3 HIHIT(0.812)QAT(0.232)ET(0.518)T(0.493)T(0.304)T(0.642)RHKR 54.225 0.02699 24062000 879.12 1098.4 775.45 990.89 905.63 977.06 1087.5 1044.9 1283.5 1054.6 TRUE FALSE 891.4303923 1218.327027 579.6780569 927.3387505 1028.992138 1150.327872 1293.847448 956.1292229 1406.78591 839.6719411 1.061641278 1.450955983 0.690362543 1.104406025 1.225469243 1.369972981 1.540896372 1.138693788 1.675399452 1 9.713681968 -6.977519044 2.896033204 1.364043854 1.076902519 0.207842316 0.245342005 0.404618211 6.930294127 0.080859732 0.089144528 1.05E-07 6.977519044 -0.287141335 HIISATSLSTS(ph)PTELGSR ddPTM_K562_Paclitaxel_30min_R1 4 HIISATSLSTSPTELGSR 18 0 Q5JSZ5-5;Q5JSZ5;A0A1W2PQP5 Q5JSZ5-5 PRRC2B Protein PRRC2B 1 HIISATSLST(0.168)S(0.818)PT(0.014)ELGSR;HIISATSLST(0.176)S(0.823)PT(0.001)ELGSR;HIISATS(0.001)LS(0.044)T(0.367)S(0.588)PTELGSR;HIISATSLST(0.125)S(0.807)PT(0.067)ELGSR 300.29 1.36E-179 171213000 7572.3 8331.2 9507.6 7917.1 6377 6921.1 6355.8 7736.4 5742.64 9046.5 TRUE FALSE 7678.335563 9240.82859 7107.288791 7409.332642 7245.655364 8148.459908 7561.77987 7079.144531 6294.246231 7202.818334 1.066018218 1.282946225 0.986737199 1.02867132 1.005947259 1.131287717 1.049836261 0.982829804 0.873858806 1 12.8143458 -5.726956637 0.313066521 0.957395643 1.259891358 0.284194121 0.086578804 7.272901342 0.725386805 0.100891987 0.82177999 1.88E-06 5.726956637 0.302495715 HIKEEPLS(ph)EEEPCT(ph)STAIASPEK ddPTM_K562_Paclitaxel_30min_R1 1 HIKEEPLSEEEPCTSTAIASPEK 23 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 2 HIKEEPLS(0.999)EEEPCT(0.331)S(0.331)T(0.331)AIAS(0.009)PEK 75.703 0.0032549 47148000 1759.3 1323.4 3530.5 1693.7 1362.2 1136.3 1080.7 1548.2 1341.9 2048.9 TRUE FALSE 1783.935628 1467.893287 2639.18161 1585.073663 1547.754702 1337.806851 1285.757183 1416.670746 1470.795491 1631.333055 1.093544707 0.89981214 1.617806739 0.971643195 0.948766837 0.820069725 0.788163508 0.868412947 0.901591178 1 10.67183564 -6.507228694 24.79179681 0.880821258 1.19356274 0.392992948 0.175487245 643.984816 1020159.427 0.050060073 0.071709524 3.11E-07 6.507228694 0.312741482 HIKEEPLS(ph)EEEPCTSTAIASPEK ddPTM_K562_Paclitaxel_30min_R1 2 HIKEEPLSEEEPCTSTAIASPEK 23 1 Q9Y2X3 Q9Y2X3 NOP58 Nucleolar protein 58 1 HIKEEPLS(0.902)EEEPCT(0.069)S(0.022)T(0.007)AIASPEK;HIKEEPLS(0.883)EEEPCT(0.069)S(0.024)T(0.023)AIAS(0.001)PEK 85.013 0.00035725 89750000 6473.5 5030.9 15301.5 7478.7 4990.6 4722.5 3924 6422.6 5579.7 9787 TRUE FALSE 6564.148972 5580.190675 11438.44708 6999.049655 5670.404212 5559.969068 4668.558515 5876.960041 6115.655116 7792.404028 0.842377904 0.716106436 1.467897075 0.898188753 0.727683548 0.713511395 0.599116588 0.754190879 0.784822642 1 12.92785277 -6.593793403 5.368373595 0.742955364 1.01043767 0.22323197 0.203772369 0.280961137 14.84909877 0.061729872 0.08063062 2.55E-07 6.593793403 0.267482306 HIMGQNVADYMR ddPTM_K562_Paclitaxel_30min_R1 1 HIMGQNVADYMR 12 0 A0A2R8Y6J3;P46777 A0A2R8Y6J3 RPL5 60S ribosomal protein L5 0 113.61 0.0097774 14331000 1378.8 1244.7 1462.7 1330.7 1126.8 1358.3 1237.7 1489.6 1528.9 1719.2 FALSE TRUE 1398.107454 1380.600555 1093.423295 1245.354858 1280.289237 1599.175434 1472.547114 1363.049182 1675.757676 1368.826096 1.021391583 1.008601866 0.798803659 0.909797717 0.935319132 1.168282397 1.0757737 0.995779658 1.224229784 1 10.41872345 -7.239424232 22.13174573 1.091484344 0.929941296 0.45887115 0.0857189 173.552064 174470.585 0.028613913 0.02857362 5.76E-08 7.239424232 -0.161543048 HIQSNLDFSPVNSAS(ph)SEENVKYSSSQPEPR ddPTM_K562_Paclitaxel_30min_R1 1 HIQSNLDFSPVNSASSEENVKYSSSQPEPR 30 1 E7EPP6;O14757-2;O14757-3;O14757 E7EPP6 CHEK1 Serine/threonine-protein kinase Chk1 1 HIQSNLDFSPVNS(0.012)AS(0.48)S(0.48)EENVKY(0.007)S(0.003)S(0.009)S(0.009)QPEPR 110.27 1.01E-15 0 474.37 444.61 916.65 657.08 478.95 483.24 485.21 472.34 606.42 515.46 TRUE FALSE 481.0126436 493.1540234 685.2303705 614.9378298 544.1910987 568.935829 577.2760645 432.2117687 664.6693506 410.4089691 1.172032484 1.201616097 1.669628157 1.498353779 1.325972724 1.386265584 1.406587351 1.053124569 1.6195293 1 8.68091845 -11.84106249 2.672553645 0.861371616 1.368849365 0.266306277 0.184399457 27381061.85 18129808.84 24281260.22 0.046399428 1.44E-12 11.84106249 0.507477748 HIQSNLDFSPVNSASSEENVKYS(ph)SSQPEPR ddPTM_K562_Paclitaxel_30min_R1 1 HIQSNLDFSPVNSASSEENVKYSSSQPEPR 30 1 E7EPP6;O14757-2;O14757-3;O14757 E7EPP6 CHEK1 Serine/threonine-protein kinase Chk1 1 HIQSNLDFSPVNS(0.017)AS(0.052)S(0.052)EENVKY(0.236)S(0.277)S(0.277)S(0.088)QPEPR 58.383 0.0010635 31539000 796.82 575.88 973.49 763.94 566.93 604.29 547 800.63 590.28 1168.6 TRUE FALSE 807.9779384 638.7565259 727.7204095 714.9443077 644.1554642 711.4523468 650.7903945 732.6114841 646.9790314 930.4386785 0.868383868 0.686511149 0.782126137 0.76839487 0.692313722 0.764641844 0.699444691 0.787382878 0.695348384 1 9.861767261 -11.3360505 5.582957843 1.000049601 0.747484056 0.653685419 0.054706285 3.08E-05 3.67E-06 0.048351657 0.011724701 4.61E-12 11.3360505 -0.252565544 HIS(ph)LTLPATFR ddPTM_K562_Paclitaxel_30min_R1 2 HISLTLPATFR 11 0 Q9H7P6 Q9H7P6 MVB12B Multivesicular body subunit 12B 1 HIS(0.999)LT(0.001)LPATFR;HIS(0.998)LT(0.002)LPATFR 85.457 0.018839 12611300 5203.5 4934.2 7546.7 5048.7 5298.8 5242.3 5199.6 5454.9 4353.3 6571.7 TRUE FALSE 5276.365054 5472.932642 5641.442249 4724.898979 6020.586269 6171.948299 6186.196956 4991.472197 4771.453916 5232.383933 1.008405561 1.045973062 1.078178192 0.903010758 1.15063924 1.179567168 1.182290336 0.953957558 0.91190822 1 12.35325269 -8.379997313 9.868199113 0.94847989 1.07693639 0.320912101 0.081834336 0.501155588 39.04966467 0.048561461 0.023269423 4.17E-09 8.379997313 0.1284565 HITIFSPEGR ddPTM_K562_Paclitaxel_30min_R1 2 HITIFSPEGR 10 0 G3V4S5;G3V2S7;G3V3U4;G3V3I1;G3V295;G3V5Z7;P60900 G3V4S5 PSMA6 Proteasome subunit alpha type;Proteasome subunit alpha type-6 0 ; 117.02 0.0073816 22234000 4491.1 4703.2 5654.2 5439.9 4281.7 4183.8 4261.8 4877.3 4221.1 5584 FALSE TRUE 4553.989256 5216.711281 4226.72728 5091.009162 4864.94003 4925.738187 5070.454302 4462.942922 4626.555515 4445.977735 1.024294211 1.173355242 0.950685661 1.145082019 1.094234007 1.107908874 1.140458771 1.003815851 1.040615988 1 12.11828501 -8.279834713 24.83446885 1.01666193 1.091512392 0.243914696 0.061324424 1113.20166 1502860.053 0.031709169 0.015277152 5.25E-09 8.279834713 0.074850462 HKELAPYDENWFYTR ddPTM_K562_Paclitaxel_30min_R1 2 HKELAPYDENWFYTR 15 1 M0R2L9;M0QYF7;M0R140;P39019 M0R2L9 RPS19 40S ribosomal protein S19 0 ; 100.11 0.0054702 53176000 6287.1 6425.3 9040.1 6460 5191.4 4885.5 6153.2 10628.6 7242.3 11859.6 FALSE TRUE 6375.138797 7126.835983 6757.814948 6045.684514 5898.556571 5751.874829 7320.737578 9725.634088 7937.955274 9442.60701 0.675146047 0.754753002 0.715672583 0.640255864 0.62467458 0.60914055 0.775287754 1.029973404 0.840652933 1 13.20496951 -8.057197972 4.47734981 0.948688094 0.673090328 0.814119662 0.061184805 0.093461505 3.835316953 0.030308355 0.017477169 8.77E-09 8.057197972 -0.275597766 HKS(ph)DNETNLQQQVVWGNR ddPTM_K562_Paclitaxel_30min_R1 2 HKSDNETNLQQQVVWGNR 18 1 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 HKS(0.66)DNET(0.34)NLQQQVVWGNR;HKS(1)DNETNLQQQVVWGNR 140.27 6.88E-11 85201000 3965.6 3250.56 6806.5 4436.95 3451.95 2982.86 2425.67 4093.52 3676.4 5173 TRUE FALSE 4021.130635 3605.467133 5088.114893 4152.383886 3922.164032 3511.82834 2885.92822 3745.749925 4029.534647 4118.73976 0.976301216 0.875381146 1.235357218 1.008168549 0.952272846 0.85264633 0.700682342 0.909440786 0.978341648 1 12.00798726 -6.97587847 3.089097079 0.872056648 1.027650355 0.234908291 0.11325514 0.355463602 6.990595821 0.03976332 0.043843538 1.06E-07 6.97587847 0.155593707 HKS(ph)DVEIPATVTAFSFEDDTVPLSPLK ddPTM_K562_Paclitaxel_30min_R1 1 HKSDVEIPATVTAFSFEDDTVPLSPLK 27 1 Q9UEY8-2;Q9UEY8 Q9UEY8-2 ADD3 Gamma-adducin 1 HKS(0.994)DVEIPAT(0.003)VT(0.002)AFS(0.001)FEDDTVPLSPLK 52.329 0.010703 7099100 922.88 860.33 2552 1325.6 779.15 897.51 633.2 967.11 1045.5 1839.4 TRUE FALSE 935.8031673 954.2637388 1907.716037 1240.581949 885.2834211 1056.670797 753.3463945 884.947969 1145.924946 1464.52927 0.638978808 0.651583931 1.302613799 0.8470858 0.604483256 0.721508828 0.514394905 0.604254204 0.782452744 1 10.51622131 -5.567968729 24.9999875 0.779209912 0.642110753 0.069285869 0.214923862 376.918144 208979.4656 0.059185863 0.156591243 2.70E-06 5.567968729 -0.137099159 HLAGYESSSTLMTSELESTSLGDS(ph)DEEDTMSR ddPTM_K562_Paclitaxel_30min_R1 1 HLAGYESSSTLMTSELESTSLGDSDEEDTMSR 32 0 I3L0M7;I3L2W9;I3L2N2;O14641 I3L0M7 DVL2 Segment polarity protein dishevelled homolog DVL-2 1 HLAGYESSSTLMTS(0.001)ELES(0.002)T(0.002)S(0.004)LGDS(0.937)DEEDT(0.043)MS(0.011)R 92.761 4.76E-10 6857100 305.6 343.95 309.7 357.17 312.74 226.56 286.8 367.49 208.47 299.91 TRUE FALSE 309.8793429 381.5036242 231.5124047 334.2627148 355.3404827 266.7372349 341.2188028 336.2694307 228.494475 238.7881774 1.297716437 1.597665464 0.969530432 1.399829416 1.488099146 1.117045399 1.428960205 1.408233165 0.956891909 1 7.899587599 -8.766246406 24.95693784 0.978445713 1.337412311 0.41339309 0.171503459 118.123307 613231.3535 0.143414413 0.041720302 1.71E-09 8.766246406 0.358966598 HLAPPPLLS(ph)PLLPSIKPTVR ddPTM_K562_Paclitaxel_30min_R1 2 HLAPPPLLSPLLPSIKPTVR 20 1 Q14676;Q14676-3;Q14676-2;H0Y6Z8 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 HLAPPPLLS(1)PLLPSIKPTVR;HLAPPPLLS(1)PLLPSIKPTVR 62.765 0.015245 11629300 8198 6977.3 13214.3 9043.4 7418.2 6270.6 5444.8 7960 5976 9721.5 TRUE FALSE 8312.797293 7739.10521 9878.186533 8463.396801 8428.684431 7382.602866 6477.922376 7283.748315 6550.021501 7740.252964 1.073969718 0.999851716 1.27620978 1.093426383 1.088941727 0.953793487 0.836913523 0.941021999 0.846228351 1 12.918165 -7.308516817 2.962354841 0.900225916 1.112585853 0.606126431 0.077639428 0.180359206 3.159802337 0.029156126 0.026232115 4.91E-08 7.308516817 0.212359936 HLAQLMES(ph)IPHS(ph)PGPTR ddPTM_K562_Paclitaxel_30min_R1 1 HLAQLMESIPHSPGPTR 17 0 Q9NXS2-3;Q9NXS2 Q9NXS2-3 QPCTL Glutaminyl-peptide cyclotransferase-like protein 2 HLAQLMES(1)IPHS(0.989)PGPT(0.011)R 49.595 0.029273 48685000 0 0 0 149.4 149.76 58.473 0 133.34 0 0 TRUE FALSE 0 0 0 139.8181527 170.1598475 68.84236555 0 122.0119347 0 0 0 HLDGEEDGS(ph)SDQSQASGTTGGRR ddPTM_K562_Paclitaxel_30min_R1 2 HLDGEEDGSSDQSQASGTTGGRR 23 1 Q5H907;Q5H909;Q9UNF1-2;Q9UNF1 Q5H907 MAGED2 Melanoma-associated antigen D2 1 HLDGEEDGS(0.5)S(0.5)DQSQASGTTGGRR;HLDGEEDGS(0.498)S(0.498)DQS(0.002)QAS(0.002)GT(0.001)T(0.001)GGRR 75.483 0.00064271 9573300 1340.29 1211.9 1708.52 1433.05 1039.8 1242.99 926.16 1066.12 781 929.76 TRUE FALSE 1359.058195 1344.21934 1277.182995 1341.140587 1181.438364 1463.416824 1101.894025 975.5464515 856.0185396 740.2744016 1.835884359 1.815839285 1.725283209 1.81168035 1.595946532 1.976857258 1.488494027 1.317817352 1.15635302 1 9.531916331 -8.329847488 1.377586326 1.043843451 1.786645282 0.879857109 0.106611691 0.137517663 0.459279604 0.087602119 0.032181832 4.68E-09 8.329847488 0.742801831 HLDGEEDGSS(ph)DQSQASGTTGGR ddPTM_K562_Paclitaxel_30min_R1 2 HLDGEEDGSSDQSQASGTTGGR 22 0 Q5H907;Q5H909;Q9UNF1-2;Q9UNF1 Q5H907 MAGED2 Melanoma-associated antigen D2 1 HLDGEEDGS(0.14)S(0.86)DQSQASGTTGGR;HLDGEEDGS(0.053)S(0.947)DQSQASGTTGGR 171.32 4.97E-58 6419500 2652.9 2879.8 3567.7 2935.9 3095.8 2181.8 2029.02 2502.2 1956.76 2201.28 TRUE FALSE 2690.048785 3194.226303 2666.99001 2747.604515 3517.500372 2568.711596 2414.015953 2289.622492 2144.715541 1752.657928 1.534839596 1.822504125 1.521683135 1.567678707 2.006952022 1.465609207 1.377345753 1.306371572 1.223693173 1 10.77532873 -8.256122894 0.918386623 1.055408312 1.681914729 0.685943262 0.152893112 0.340196809 0.517143338 0.139335017 0.058391524 5.54E-09 8.256122894 0.626506417 HLEFSHDQYR ddPTM_K562_Paclitaxel_30min_R1 3 HLEFSHDQYR 10 0 Q9NR45 Q9NR45 NANS Sialic acid synthase 0 ;; 195.79 2.46E-05 49723400 4033.83 3414.6 4742.84 3522.99 3445.9 3258.15 3212.41 3868.31 2900.74 4752.6 FALSE TRUE 4090.316065 3787.417575 3545.451383 3297.04119 3915.28992 3835.937156 3821.948028 3539.67292 3179.369038 3784.017511 1.080945332 1.000898533 0.936954275 0.871307064 1.034691279 1.013720773 1.010023874 0.935427204 0.840209917 1 11.88570305 -8.436006945 5.411312677 0.910184225 0.988158891 0.183785025 0.064314051 0.356059564 16.74246547 0.038286257 0.017545538 3.66E-09 8.436006945 0.077974666 HLEINPDHPIVETLR ddPTM_K562_Paclitaxel_30min_R1 4 HLEINPDHPIVETLR 15 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ;;; 160.87 3.89E-06 374087000 7124.3 6998.7 8207.5 7019.5 6313.5 5550.6 6139.5 7569.4 5805.3 7562.9 FALSE TRUE 7224.06218 7762.841734 6135.415116 6569.300688 7173.505588 6534.920976 7304.438075 6926.332223 6362.925004 6021.576829 1.199696091 1.289170919 1.018905063 1.090960204 1.191300185 1.085250784 1.213044072 1.150252238 1.056687506 1 12.55592561 -15 0.109772396 0.535345552 1.228237116 0.304802304 0.074295018 236.6536756 1.725201924 24.7304674 0.989661897 1.00E-15 15 0.692891564 HLEINPDHSIIETLR ddPTM_K562_Paclitaxel_30min_R1 4 HLEINPDHSIIETLR 15 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ;;; 130.27 2.79E-05 135653000 6512.6 6392.1 7720.2 6822.09 5398.5 5634.06 6013.5 6754.2 5303.56 7431.5 FALSE TRUE 6603.796493 7090.011095 5771.140028 6384.551682 6133.867097 6633.181435 7154.530232 6180.388552 5812.990635 5916.956221 1.116079999 1.198253093 0.975356216 1.079026351 1.036659199 1.121046225 1.209157203 1.044521595 0.982429212 1 12.53063951 -8.517792058 20.00280569 0.998634121 1.102526964 0.332684936 0.065105954 21.40926253 84224.88831 0.043058603 0.017513679 3.04E-09 8.517792058 0.103892843 HLFSS(ph)TENLAAGSWKEPAEGGGLSSDR ddPTM_K562_Paclitaxel_30min_R1 2 HLFSSTENLAAGSWKEPAEGGGLSSDR 27 1 Q6WKZ4;E7EX40;Q6WKZ4-2;Q6WKZ4-3 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 HLFS(0.238)S(0.38)T(0.38)ENLAAGS(0.003)WKEPAEGGGLSSDR;HLFS(0.095)S(0.496)T(0.409)ENLAAGSWKEPAEGGGLSSDR 109.41 1.69E-09 201830000 2711.85 2197.12 4506.23 2808.51 2064.38 2137.96 1738.41 2335.66 2343.52 2733.06 TRUE FALSE 2749.824267 2437.008992 3368.576504 2628.384739 2345.583506 2517.097188 2068.264222 2137.231104 2568.625567 2176.060872 1.263670655 1.119917656 1.548015751 1.207863609 1.077903443 1.156721864 0.950462484 0.982155937 1.180401523 1 11.0875032 -6.666962646 3.652341802 1.055135937 1.302622788 0.477026718 0.119318114 0.207611273 5.346641663 0.036993794 0.04820701 2.15E-07 6.666962646 0.247486851 HLGGSGSVVPGS(ph)PCLDR ddPTM_K562_Paclitaxel_30min_R1 2 HLGGSGSVVPGSPCLDR 17 0 H0Y4U1;A0A087WWW7;E9PGF5;E9PF55;A0A494C067;A0A2R8Y4T1;Q9HBL0 H0Y4U1 TNS1 Tensin-1 1 HLGGS(0.001)GS(0.001)VVPGS(0.998)PCLDR;HLGGSGSVVPGS(1)PCLDR 131.61 3.24E-10 0 1943.64 1544.96 1925.65 1371.06 1555.64 1368.62 1465.88 2007.44 1474.77 1857.11 TRUE FALSE 1970.856957 1713.643958 1439.495841 1283.126348 1767.544505 1611.325541 1744.023078 1836.895442 1616.428248 1478.629963 1.332893967 1.158940371 0.973533526 0.867780568 1.195393405 1.089742249 1.179485822 1.242295563 1.093193219 1 10.53004534 -7.741896568 23.59258427 1.148934945 1.093204522 0 0.131263939 538.3863774 649952.3322 0.053132857 0.041081836 1.81E-08 7.741896568 -0.055730423 HLGTAGTDVDLR ddPTM_K562_Paclitaxel_30min_R1 1 HLGTAGTDVDLR 12 0 Q9Y613 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 0 92.781 0.017331 0 704.26 619.96 848.65 729.58 667.73 684.36 571.76 444.09 806.41 683.91 FALSE TRUE 714.1218128 687.6493294 634.3978115 682.7880043 758.6861308 805.7216371 680.2484752 406.3617826 883.8692836 544.5287666 1.311449195 1.262833796 1.165040032 1.253906214 1.393289349 1.479667717 1.249242495 0.746263205 1.623181984 1 9.088864456 -11.61185739 5.778208299 0.998485663 1.264848964 0.124953055 0.217365716 0.004190529 0.000281492 0.207984091 0.05017717 2.44E-12 11.61185739 0.266363301 HLLNSPT(ph)DPFNR ddPTM_K562_Paclitaxel_30min_R1 2 HLLNSPTDPFNR 12 0 O95155;O95155-4;O95155-2;O95155-3 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 HLLNS(0.09)PT(0.91)DPFNR;HLLNS(0.042)PT(0.958)DPFNR 164.92 0.0026038 48956000 4827.6 4633.1 6506.6 4761.4 4712 4190.2 3953.5 4257.3 3426.4 5208.6 TRUE FALSE 4895.201294 5138.957526 4863.928357 4456.025115 5353.854175 4933.273137 4703.655986 3895.615792 3755.52103 4147.084461 1.180395852 1.239173587 1.172854906 1.074495867 1.290992316 1.189576239 1.134207907 0.93936254 0.905581033 1 12.01788171 -8.17635787 3.270037279 0.938510781 1.190422856 0.789061087 0.056149331 0.111219416 2.27829826 0.031073666 0.016024559 6.66E-09 8.17635787 0.251912075 HLLS(ph)PQLVQYQCGDSGK ddPTM_K562_Paclitaxel_30min_R1 1 HLLSPQLVQYQCGDSGK 17 0 Q9P209 Q9P209 CEP72 Centrosomal protein of 72 kDa 1 HLLS(1)PQLVQYQCGDSGK 110.37 0.00086186 7483900 1164.5 1205.7 2248 1368.8 1279.5 911.48 818.5 1594.8 1153 1610.7 TRUE FALSE 1180.806593 1337.342403 1680.464597 1281.011295 1453.789562 1073.11818 973.8061021 1459.311786 1263.750802 1282.438456 0.92075108 1.04281215 1.310366661 0.99888715 1.133613512 0.836779477 0.759339443 1.137919546 0.98542803 1 10.32467388 -7.246550489 24.40866025 0.940978649 1.087297649 0.20921305 0.133241642 975.4309833 1599110.065 0.046078085 0.045883167 5.67E-08 7.246550489 0.146319 HLLS(ph)PVGR ddPTM_K562_Paclitaxel_30min_R1 1 HLLSPVGR 8 0 H7C0W5;H7C1Q6;Q9NXE4-5;Q9NXE4-9;Q9NXE4-10;Q9NXE4-7;Q9NXE4-8;Q9NXE4-3;Q9NXE4-6;Q9NXE4-2;Q9NXE4;Q9NXE4-4 H7C0W5 SMPD4 Sphingomyelin phosphodiesterase 4 1 HLLS(1)PVGR 81.338 0.022066 5313900 2010.5 2132.6 2548.2 2097.4 2054 1596.1 1981.7 2069.6 1195.3 2541.1 TRUE FALSE 2038.653203 2365.44448 1904.875394 1962.882152 2333.789575 1879.145925 2357.71723 1893.774562 1310.113906 2023.222425 1.007626832 1.169147025 0.941505675 0.970176154 1.153501239 0.9287886 1.165327747 0.936018966 0.647538249 1 10.98243922 -8.524900702 24.94805061 0.81310555 1.04545305 0.375877949 0.116275408 60.98897833 752449.973 0.071344695 0.027361152 2.99E-09 8.524900702 0.232347501 HLLS(ph)PVGRR ddPTM_K562_Paclitaxel_30min_R1 1 HLLSPVGRR 9 1 H7C0W5;H7C1Q6;Q9NXE4-5;Q9NXE4-9;Q9NXE4-10;Q9NXE4-7;Q9NXE4-8;Q9NXE4-3;Q9NXE4-6;Q9NXE4-2;Q9NXE4;Q9NXE4-4 H7C0W5 SMPD4 Sphingomyelin phosphodiesterase 4 1 HLLS(1)PVGRR 84.31 0.016297 8905800 1289.3 1397.2 1496.3 1317.5 1227.4 1276.3 1011.2 1485.7 1252.5 1290.2 TRUE FALSE 1307.354178 1549.751021 1118.540559 1233.001447 1394.59266 1502.633885 1203.069921 1359.480512 1372.808221 1027.256532 1.272665724 1.508630973 1.088861958 1.200285818 1.357589479 1.462764011 1.171148476 1.323408973 1.336383054 1 10.00458079 -11.38742499 3.306166197 0.99715027 1.302291326 0.358902584 0.121254675 174668840.9 229484827.9 4715267.192 0.030543429 4.10E-12 11.38742499 0.305141056 HLLTDLPLPPELPGGDLS(ph)PPDSPEPK ddPTM_K562_Paclitaxel_30min_R1 2 HLLTDLPLPPELPGGDLSPPDSPEPK 26 0 J3QSD7;Q9NYV4-3;Q9NYV4-2;Q9NYV4 J3QSD7 CDK12 Cyclin-dependent kinase 12 1 HLLTDLPLPPELPGGDLS(0.869)PPDS(0.131)PEPK;HLLTDLPLPPELPGGDLS(0.986)PPDS(0.014)PEPK 112.99 1.32E-07 26100000 6934.2 5720 11861.4 7693.5 5607 4852.4 4993.9 7691.9 7171.6 9945 TRUE FALSE 7031.300194 6344.528944 8866.84287 7200.073345 6370.768327 5712.905009 5941.466455 7038.425084 7860.464224 7918.203541 0.887991848 0.801258633 1.119804868 0.909306424 0.804572438 0.721490042 0.750355358 0.888891659 0.992708028 1 12.95095744 -4.823853378 17.4438721 0.877906914 12.81477419 0 0.118192966 7206.866118 717617.3155 0.030432247 18945.42919 1.50E-05 4.823853378 11.93686728 HLPLSFLSS(ph)PGQR ddPTM_K562_Paclitaxel_30min_R1 2 HLPLSFLSSPGQR 13 0 Q12772 Q12772 SREBF2 Sterol regulatory element-binding protein 2;Processed sterol regulatory element-binding protein 2 1 HLPLSFLS(0.492)S(0.508)PGQR;HLPLSFLS(0.357)S(0.643)PGQR 180.7 0.00015315 17462200 5564.2 5472.2 6608.6 5708.6 5651.2 5161.2 4477.2 5530.2 4874.1 5703.7 TRUE FALSE 5642.115967 6069.673302 4940.177196 5342.475947 6420.989116 6076.466353 5326.725327 5060.374992 5342.279083 4541.282809 1.24240577 1.336554792 1.087837381 1.176424409 1.413915271 1.338050636 1.17295609 1.114305187 1.17638106 1 12.14888417 -8.792922284 0.954306175 1.01493006 1.25865169 0.409491322 0.093069574 0.569087666 1.117724916 0.095284163 0.033584207 1.61E-09 8.792922284 0.243721629 HLPS(ph)PPLTQEVDLHSIAGPPVPPR ddPTM_K562_Paclitaxel_30min_R1 3 HLPSPPLTQEVDLHSIAGPPVPPR 24 0 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 HLPS(0.996)PPLT(0.004)QEVDLHSIAGPPVPPR;HLPS(0.803)PPLT(0.077)QEVDLHS(0.12)IAGPPVPPR;HLPS(0.992)PPLT(0.008)QEVDLHSIAGPPVPPR 134.29 5.01E-14 184949000 5591.6 5516.3 7357.1 6176.4 4919.8 4595.2 4722 6408.8 5243.4 6611.8 TRUE FALSE 5669.899652 6118.588289 5499.709114 5780.273349 5589.960053 5410.0942 5617.97485 5864.332438 5747.051998 5264.311531 1.077044855 1.162277014 1.044715739 1.098011262 1.06185966 1.027692637 1.067181305 1.113978989 1.091700589 1 12.36202915 -5.775447552 24.99996331 1.067290871 1.119660955 0.262300826 0.037399002 285.5476408 509609.4837 0.009618035 0.020184199 1.68E-06 5.775447552 0.052370084 HLPSPPLT(ph)QEVDLHSIAGPPVPPR ddPTM_K562_Paclitaxel_30min_R1 1 HLPSPPLTQEVDLHSIAGPPVPPR 24 0 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 HLPS(0.21)PPLT(0.79)QEVDLHSIAGPPVPPR 54.626 0.02811 11871000 1630.3 1369.5 1822 1471.5 1360 1268 1227.2 1744.7 1362.7 1922 TRUE FALSE 1653.12923 1519.026641 1362.013566 1377.124576 1545.255025 1492.861996 1460.054794 1596.476845 1493.593424 1530.295345 1.08026809 0.992636256 0.890033137 0.899907708 1.009775682 0.975538481 0.954100003 1.043247534 0.976016446 1 10.5795944 -8.239142892 24.71786074 1.007224005 0.968256512 0.079453655 0.053134255 1740.640334 1929676.72 0.02667122 0.015383384 5.77E-09 8.239142892 -0.038967493 HLQQGS(ph)ESPMMIGELRSDLDDVDP ddPTM_K562_Paclitaxel_30min_R1 1 HLQQGSESPMMIGELRSDLDDVDP 24 1 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 HLQQGS(0.574)ES(0.426)PMMIGELRS(0.001)DLDDVDP 64.522 0.00332 8270300 1741.9 1828.4 2136.6 1859.2 1757.6 1354.1 1461.9 1711.9 1316.4 2017.7 TRUE FALSE 1766.291974 2028.030895 1597.188905 1739.959233 1997.014876 1594.230622 1739.287893 1566.46341 1442.846102 1606.491632 1.09947163 1.262397422 0.99420929 1.083080172 1.243090743 0.992367835 1.08266228 0.975083454 0.898134838 1 10.64969775 -7.942896225 1.260588373 0.947649126 1.128563873 0.414016227 0.084867173 0.465261298 1.424208336 0.06105889 0.029822079 1.14E-08 7.942896225 0.180914747 HLQQGSES(ph)PMMIGELR ddPTM_K562_Paclitaxel_30min_R1 2 HLQQGSESPMMIGELR 16 0 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 HLQQGS(0.001)ES(0.999)PMMIGELR;HLQQGS(0.007)ES(0.993)PMMIGELR 119.62 0.00023824 25681000 5943.8 5689.5 6591.5 6855.3 6117.2 5785.9 5572.9 6492.4 5218.3 7215.5 TRUE FALSE 6027.031538 6310.698851 4927.394302 6415.631741 6950.466205 6811.948127 6630.328683 5940.830096 5719.541031 5744.977139 1.049095826 1.098472404 0.857687365 1.116737558 1.209833571 1.185722408 1.154108802 1.034091164 0.995572461 1 12.48808544 -5.226298856 20.22554377 1.078589306 1.049095048 0.001542342 0.100051091 10274.74817 5912388.529 0.026954951 2.78026765 5.94E-06 5.226298856 -0.029494258 HLQQGSES(ph)PMMIGELRSDLDDVDP ddPTM_K562_Paclitaxel_30min_R1 2 HLQQGSESPMMIGELRSDLDDVDP 24 1 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 HLQQGS(0.151)ES(0.849)PMMIGELRSDLDDVDP;HLQQGS(0.176)ES(0.784)PMMIGELRS(0.04)DLDDVDP 70.501 0.0011383 24632000 2276.44 2268.8 3256.6 2309.53 1834.53 1739.87 2008.97 2572.16 1518.67 2616.43 TRUE FALSE 2308.317183 2516.515257 2434.431053 2161.407083 2084.424045 2048.411516 2390.16157 2353.638953 1664.545039 2083.20013 1.108063095 1.20800456 1.168601623 1.037541738 1.000587517 0.983300397 1.147350913 1.129818935 0.799032707 1 11.02458573 -6.287935353 5.037965685 1.022188444 1.166985685 0.348505993 0.092066352 0.222487163 16.03343605 0.026230331 0.04126649 5.15E-07 6.287935353 0.144797241 HLQQGSESPMMIGELRS(ph)DLDDVDP ddPTM_K562_Paclitaxel_30min_R1 1 HLQQGSESPMMIGELRSDLDDVDP 24 1 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 HLQQGSES(0.015)PMMIGELRS(0.985)DLDDVDP 91.067 0.00012899 12306000 1088.2 657.65 990.2 998.24 791.23 933.5 879.83 1076.4 854.83 1304.1 TRUE FALSE 1103.438157 729.454451 740.2117634 934.2173544 899.0089216 1099.043118 1046.773149 984.9531013 936.940241 1038.323704 1.06271113 0.702530866 0.712891134 0.899736133 0.865827216 1.058478308 1.008137583 0.948599264 0.90235852 1 10.02004057 -6.935383325 2.396497544 0.980456062 0.820995538 0.283624644 0.103045041 0.358917537 4.183906996 0.036038479 0.04099859 1.16E-07 6.935383325 -0.159460524 HLS(ph)AEDFSR ddPTM_K562_Paclitaxel_30min_R1 1 HLSAEDFSR 9 0 Q08495-3;Q08495-2;Q08495;Q08495-4 Q08495-3 DMTN Dematin 1 HLS(1)AEDFSR 103.21 0.0069676 4808400 597.67 614.27 778 767.21 534.11 732.06 490.04 691.94 549.94 641.14 TRUE FALSE 606.039224 681.3380759 581.5842778 718.0045845 606.8648246 861.8805624 583.0225318 633.155378 602.7641942 510.4753161 1.187205737 1.334713069 1.139299511 1.406541241 1.188823055 1.688388322 1.142116991 1.24032516 1.18079009 1 8.995697391 -9.013050372 1.211267011 1.004456162 1.306191909 0.261743076 0.15437791 0.682224079 2.249292947 0.142801582 0.044705754 9.70E-10 9.013050372 0.301735748 HLS(ph)EGTNSYATR ddPTM_K562_Paclitaxel_30min_R1 2 HLSEGTNSYATR 12 0 Q14149 Q14149 MORC3 MORC family CW-type zinc finger protein 3 1 HLS(1)EGTNSYATR;HLS(0.63)EGT(0.11)NS(0.26)YATR 122.46 0.0020345 23581000 3585.39 3091.36 3415.75 3114.48 2757.37 2684.92 2713.14 3061.13 2170.61 3433.44 TRUE FALSE 3635.596522 3428.885139 2553.401667 2914.731193 3132.970477 3161.052864 3227.944151 2801.0679 2379.106789 2733.703043 1.329916404 1.254300516 0.934045003 1.066220854 1.146053696 1.156326351 1.180795463 1.024642346 0.870287208 1 11.41664082 -5.60794113 6.326765324 1.061532851 1.311629652 0.520713421 0.094285922 0.161221339 9.397869821 0.025807998 0.070222526 2.47E-06 5.60794113 0.250096801 HLTYENVER ddPTM_K562_Paclitaxel_30min_R1 2 HLTYENVER 9 0 H3BMH2;H3BSC1;P62491-2;Q15907-2;P62491;Q15907 H3BMH2 RAB11A;RAB11B Ras-related protein Rab-11A;Ras-related protein Rab-11B 0 ; 175.93 5.17E-06 75437000 3963 3688.6 4445.9 3886.1 3250 3212.7 3386.2 4168.3 2701.1 4653.4 FALSE TRUE 4018.494227 4091.333822 3323.477559 3636.86294 3692.705023 3782.427236 4028.713773 3814.176897 2960.552724 3705.034526 1.084603719 1.104263346 0.897016623 0.981600283 0.99667223 1.020888526 1.087362006 1.029457855 0.799062115 1 11.85527127 -8.726630445 24.95493265 0.899530926 1.023113286 0.322438324 0.072835683 181.7415231 130293.0094 0.049729673 0.018794253 1.88E-09 8.726630445 0.12358236 HMDPPPAPVQDRS(ph)PS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 HMDPPPAPVQDRSPSPR 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 HMDPPPAPVQDRS(1)PS(1)PR 72.864 0.027801 20515000 1686.5 1661.5 2289.4 2280.8 2190.7 1793.5 1987.4 1979.3 1224.8 2401.6 TRUE FALSE 1710.116203 1842.908189 1711.412655 2134.519696 2489.110429 2111.552043 2364.498775 1811.146111 1342.447513 1912.152602 0.894340861 0.963787193 0.895018867 1.1162915 1.301732104 1.104280088 1.236563846 0.947176553 0.702060867 1 10.90098195 -8.519396994 24.6226161 0.842226461 1.075031919 0.288332924 0.142130776 158.2329205 1119066.212 0.098583186 0.039009488 3.02E-09 8.519396994 0.232805457 HMDPPPAPVQDRS(ph)PSPR ddPTM_K562_Paclitaxel_30min_R1 2 HMDPPPAPVQDRSPSPR 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 HMDPPPAPVQDRS(0.561)PS(0.439)PR;HMDPPPAPVQDRS(0.853)PS(0.147)PR 87.062 0.0062364 39826000 5558.4 5007.9 6182.3 5595.8 5298.4 4917.5 4289.1 5742 3836.8 5789.9 TRUE FALSE 5636.234749 5554.679458 4621.501903 5236.910434 6020.131783 5789.54958 5102.934334 5254.18126 4205.341783 4609.915202 1.222633064 1.204941786 1.00251343 1.136010144 1.305909441 1.255890689 1.106947549 1.139756596 0.912238425 1 12.1705245 -8.676283549 4.945663848 0.95712204 1.173614076 0.527903708 0.081936508 0.169968705 6.946344462 0.066416155 0.022881833 2.11E-09 8.676283549 0.216492036 HMDPPPAPVQDRSPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 HMDPPPAPVQDRSPSPR 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 HMDPPPAPVQDRS(0.175)PS(0.825)PR 89.604 0.0045809 18258000 2459.6 2506.9 2965 2866.2 2447.7 2143.9 2267.2 3168.4 1852.7 3405.9 TRUE FALSE 2494.041989 2780.61182 2216.449079 2682.374761 2781.11818 2524.090563 2697.389364 2899.224643 2030.660113 2711.77571 0.919708064 1.025384146 0.817342331 0.989158045 1.025570872 0.930788838 0.994694861 1.069124055 0.748830409 1 11.40502214 HMSADDLNDGFVLDKDDRR ddPTM_K562_Paclitaxel_30min_R1 1 HMSADDLNDGFVLDKDDRR 19 2 E9PFK5;P78316-2;P78316 E9PFK5 NOP14 Nucleolar protein 14 0 47 0.027961 13152000 2333.9 1909 3416.1 2218.3 1862.1 1815.5 1780.9 2319.2 1903.6 2949.9 FALSE TRUE 2366.581801 2117.431076 2553.663305 2076.028167 2115.749546 2137.453434 2118.816478 2122.169484 2086.449286 2348.708761 1.00760973 0.901529858 1.087262647 0.883901913 0.90081392 0.910054695 0.902119715 0.903547311 0.88833887 1 11.19765212 -6.315372507 24.99985585 0.907619354 0.989074341 0.357007404 0.052169029 321.4728221 149012.9017 0.013683392 0.02029577 4.84E-07 6.315372507 0.081454988 HNDDEQYAWESSAGGSFTVR ddPTM_K562_Paclitaxel_30min_R1 1 HNDDEQYAWESSAGGSFTVR 20 0 P08238;Q14568;P07900;P07900-2 P08238;P07900 HSP90AB1;HSP90AA2P;HSP90AA1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha A2;Heat shock protein HSP 90-alpha 0 109.12 0.00054367 20478000 1218.5 987.55 1379.7 1174.2 857.23 895.26 908.6 1045.1 1002.3 1312.7 FALSE TRUE 1235.562759 1095.374049 1031.377671 1098.892068 973.999239 1054.021791 1081.002107 956.3122317 1098.575393 1045.171019 1.182163241 1.048033315 0.986802783 1.05139929 0.931904177 1.008468252 1.034282511 0.914981581 1.051096302 1 10.02952331 -5.216069731 1.877818546 0.994715828 1.256766806 0.624167214 0.043199993 0.570615046 1.906817173 0.011041813 0.272061266 6.08E-06 5.216069731 0.262050978 HNGSLS(ph)PGLEAR ddPTM_K562_Paclitaxel_30min_R1 2 HNGSLSPGLEAR 12 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 HNGSLS(1)PGLEAR;HNGS(0.036)LS(0.964)PGLEAR 122.16 0.0015118 32031000 3504.9 3654 4606.4 3588.3 3373 2845.5 2933.9 3816.1 1836.74 3637 TRUE FALSE 3553.979414 4052.956077 3443.457349 3358.162499 3832.459705 3350.109472 3490.592209 3491.898486 2013.167084 2895.777404 1.22729717 1.399608987 1.18913054 1.159675635 1.323464884 1.15689468 1.205407641 1.205858738 0.695207816 1 11.49973499 -8.702808941 8.243542908 0.849120921 1.235462571 0.71090651 0.0984365 0.11564411 14.47405512 0.064988871 0.024149594 1.98E-09 8.702808941 0.38634165 HNLES(ph)TMKT(ph)Y(ph)VSK ddPTM_K562_Paclitaxel_30min_R1 1 HNLESTMKTYVSK 13 1 Q86Y13 Q86Y13 DZIP3 E3 ubiquitin-protein ligase DZIP3 3 HNLES(0.51)T(0.51)MKT(0.905)Y(0.878)VS(0.198)K 54.982 0.027827 0 914.37 728.51 1180.1 1124.6 731.54 1155.4 829.6 959.14 811.74 1242.6 TRUE FALSE 927.1740011 808.0511855 882.1691597 1052.47319 831.1881331 1360.293967 987.0122692 877.6550702 889.711254 989.3574379 0.937147653 0.816743428 0.891658693 1.063794691 0.840129261 1.37492671 0.997629604 0.887096045 0.899281918 1 9.950348026 -6.164313374 5.942540412 1.011792496 0.872331337 0.144703491 0.141429554 0.454813601 22.87338834 0.039788649 0.06992095 6.85E-07 6.164313374 -0.139461159 HNS(ph)SDGFFNNGPLR ddPTM_K562_Paclitaxel_30min_R1 1 HNSSDGFFNNGPLR 14 0 Q9HC44 Q9HC44 GPBP1L1 Vasculin-like protein 1 1 HNS(0.944)S(0.056)DGFFNNGPLR 98.882 0.005573 21240000 879.33 967.46 1165.2 1136.8 810.84 760.06 834.2 737.81 843.59 1008.1 TRUE FALSE 891.643333 1073.090555 871.030849 1063.890736 921.2901356 894.8459692 992.4850952 675.1284352 924.6205888 802.6486666 1.11087624 1.336936818 1.085195659 1.325474993 1.147812454 1.114866325 1.236512482 0.841125717 1.151961783 1 9.648624823 -8.238209186 24.8780964 0.99740778 1.195511977 0.412867481 0.107239006 641.554551 687066.4933 0.046773096 0.026982462 5.78E-09 8.238209186 0.198104198 HPPVLT(ph)PPDQEVIR ddPTM_K562_Paclitaxel_30min_R1 7 HPPVLTPPDQEVIR 14 0 P05771-2 P05771-2 PRKCB Protein kinase C beta type 1 HPPVLT(1)PPDQEVIR;HPPVLT(1)PPDQEVIR;HPPVLT(1)PPDQEVIR;HPPVLT(1)PPDQEVIR;HPPVLT(1)PPDQEVIR;HPPVLT(1)PPDQEVIR;HPPVLT(1)PPDQEVIR 156.11 3.51E-05 12033006000 8568.87 8002.97 10626.85 9285.57 7824.99 7192.09 7891.96 9458.09 6485.06 9415.42 TRUE FALSE 8688.860617 8876.761329 7943.970286 8690.035101 8890.886116 8467.50618 9389.418211 8654.566219 7107.978989 7496.552236 1.159047565 1.184112516 1.059683177 1.159204235 1.185996687 1.129520066 1.252498204 1.154472876 0.948166406 1 12.87201152 -8.755373702 24.99262634 0.974083173 1.160820717 0.714997021 0.047094637 68.15833286 280844.0023 0.034216724 0.01218459 1.76E-09 8.755373702 0.186737545 HPS(ph)SIPPPPLT(ph)AK ddPTM_K562_Paclitaxel_30min_R1 1 HPSSIPPPPLTAK 13 0 H7C1I9;O15021-2;O15021-3;O15021-6;O15021 H7C1I9 MAST4 Microtubule-associated serine/threonine-protein kinase 4 2 HPS(0.733)S(0.267)IPPPPLT(1)AK 69.431 0.027079 26138000 219.33 252.11 357.37 292.54 241.95 266.53 243.91 229.49 187.12 199.83 TRUE FALSE 222.4012967 279.6362224 267.1475236 273.7777938 274.9076862 313.7953532 290.1906492 209.9933921 205.0937121 159.1045363 1.397831274 1.757562851 1.679069182 1.720741596 1.727843169 1.972258997 1.82389928 1.319845411 1.28905006 1 7.313831159 -8.484473058 2.514433955 1.135081475 1.733737211 0.717790589 0.151846361 0.164758678 1.960441054 0.123298384 0.043075509 3.28E-09 8.484473058 0.598655736 HQDGLPYIDDS(ph)PSSSPHLSSK ddPTM_K562_Paclitaxel_30min_R1 2 HQDGLPYIDDSPSSSPHLSSK 21 0 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 HQDGLPYIDDS(0.949)PS(0.015)S(0.02)S(0.016)PHLSSK;HQDGLPYIDDS(0.96)PS(0.01)S(0.013)S(0.017)PHLSSK 89.968 0.00043313 71239000 3597.2 3547.1 5280.8 4126.7 2975.1 2678.2 1903.76 3216.2 2709.3 3369 TRUE FALSE 3647.571898 3934.384374 3947.596728 3862.031932 3380.358989 3153.141166 2264.988522 2942.963735 2969.54037 2682.395951 1.359818597 1.466742586 1.471668165 1.439769521 1.260201346 1.175494306 0.844390076 1.097139941 1.107047738 1 11.3893065 -7.16455988 1.860184166 1.022816976 1.43976873 0.840555406 0.081143439 0.13125939 0.897562393 0.032706537 0.032043108 6.85E-08 7.16455988 0.416951755 HQLGPSLRS(ph)PPR ddPTM_K562_Paclitaxel_30min_R1 1 HQLGPSLRSPPR 12 1 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;A0A0C4DGG3 Q8NHM5-4 KDM2B Lysine-specific demethylase 2B 1 HQLGPSLRS(1)PPR 98.253 0.0073958 23432000 1845.9 1708.5 2591.2 2719.3 2197.3 1428.6 1674.5 2180.1 2013.5 2352.6 TRUE FALSE 1871.748295 1895.039808 1937.019512 2544.896269 2496.609461 1681.942151 1992.227634 1994.886897 2206.905672 1873.138829 0.999257645 1.011692128 1.03410355 1.358626617 1.332848064 0.897927119 1.063577138 1.064996821 1.178185855 1 10.87124211 -10.90954251 15.89678164 1 1.105512242 0.048557995 0.13882111 0 0 0.144698856 0.035094627 1.23E-11 10.90954251 0.105512242 HQNS(ph)LPELEAAEAGAPGSGPVDLFR ddPTM_K562_Paclitaxel_30min_R1 2 HQNSLPELEAAEAGAPGSGPVDLFR 25 0 Q96BZ8 Q96BZ8 LENG1 Leukocyte receptor cluster member 1 1 HQNS(1)LPELEAAEAGAPGSGPVDLFR;HQNS(1)LPELEAAEAGAPGSGPVDLFR 116.96 3.09E-08 38715000 3002.3 2482.7 3360.1 2219.99 2264.7 2654.9 1908.56 2409.4 1164.73 3170.5 TRUE FALSE 3044.341463 2753.769582 2511.801198 2077.609778 2573.190482 3125.709238 2270.699297 2204.706431 1276.607521 2524.35036 1.205990068 1.09088248 0.995028756 0.823027505 1.0193476 1.238223223 0.899518281 0.873375767 0.505717249 1 11.30169644 -8.199629441 2.663529699 0.752909879 1.046679859 0.355583093 0.160035266 0.310115221 4.272500586 0.096382947 0.045749485 6.31E-09 8.199629441 0.293769981 HQPASASSTAAS(ph)PAHPAK ddPTM_K562_Paclitaxel_30min_R1 3 HQPASASSTAASPAHPAK 18 0 Q96L91-3;Q96L91-5;Q96L91-2;Q96L91 Q96L91-3 EP400 E1A-binding protein p400 1 HQPAS(0.001)ASS(0.001)T(0.001)AAS(0.998)PAHPAK;HQPASASSTAAS(0.999)PAHPAK;HQPASASS(0.003)T(0.008)AAS(0.989)PAHPAK 108.96 0.00052245 3514700 2189.82 2356.1 4437.26 2918.32 1901.33 2162.45 1750.94 2708.1 2053.51 3265.9 TRUE FALSE 2220.484236 2613.346966 3317.018834 2731.152017 2160.323336 2545.930145 2083.171724 2478.030002 2250.758811 2600.307787 0.85393131 1.005014475 1.275625466 1.050318747 0.830795241 0.979087998 0.801125057 0.952975649 0.865573999 1 11.34446668 -6.712932907 10.20479034 0.901144014 1.05995587 0.270733687 0.112613473 0.577647472 117.6436411 0.034039395 0.043874206 1.94E-07 6.712932907 0.158811857 HQPS(ph)TPDPFLKPR ddPTM_K562_Paclitaxel_30min_R1 3 HQPSTPDPFLKPR 13 1 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 HQPS(0.844)T(0.156)PDPFLKPR;HQPS(0.982)T(0.018)PDPFLKPR;HQPS(0.598)T(0.402)PDPFLKPR 102.15 0.0052629 88134000 5831.5 4853 8983.4 6219.6 5116.1 3890.87 3672.15 5202.4 5031.5 7142.9 TRUE FALSE 5913.158992 5382.866952 6715.429565 5820.702694 5812.999436 4580.861164 4368.921293 4760.423648 5514.798056 5687.173059 1.039736075 0.946492554 1.180802746 1.023479088 1.022124591 0.805472441 0.768206145 0.837045681 0.969690565 1 12.47349599 -7.176030112 5.526108251 0.8595379 1.046120974 0.484308182 0.085166871 0.186417297 9.30397812 0.028720595 0.028683808 6.67E-08 7.176030112 0.186583074 HQPWQS(ph)PERPLSR ddPTM_K562_Paclitaxel_30min_R1 1 HQPWQSPERPLSR 13 1 V9GYS7;E7ES68;G5E9D5;Q9BQ52-2;Q9BQ52;J3QRS2;V9GYU5;J3QL08 V9GYS7 ELAC2 Zinc phosphodiesterase ELAC protein 2 1 HQPWQS(0.737)PERPLS(0.263)R 126.56 0.0024384 7756500 1266.4 1367.5 1669.5 1527.4 1377.5 1175.6 1243.4 1736.1 787.3 1525.1 TRUE FALSE 1284.133507 1516.808275 1248.014077 1429.4394 1565.138821 1384.076154 1479.328659 1588.607469 862.9236827 1214.283783 1.057523394 1.249138213 1.027777933 1.177187261 1.288939903 1.139829234 1.218272598 1.308267055 0.710644163 1 10.24588991 -8.759339014 25 0.855322056 1.183398403 0.597202456 0.107764471 33.52436724 399071.2128 0.077678984 0.026068303 1.74E-09 8.759339014 0.328076347 HQPWQSPERPLS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 HQPWQSPERPLSR 13 1 V9GYS7;E7ES68;G5E9D5;Q9BQ52-2;Q9BQ52;J3QRS2;V9GYU5;J3QL08 V9GYS7 ELAC2 Zinc phosphodiesterase ELAC protein 2 1 HQPWQS(0.016)PERPLS(0.984)R 87.216 0.014469 100880000 775.02 741.47 1122.3 726.35 618.42 778.84 704.75 751.78 559.29 925.91 TRUE FALSE 785.8726711 822.4262021 838.9614846 679.765162 702.6592739 916.9563385 838.4726335 687.9115965 613.0123035 737.2090338 1.066010636 1.115594308 1.138023879 0.922079262 0.953134378 1.243821354 1.137360769 0.933129635 0.831531188 1 9.52592994 -8.356385367 5.805413232 0.906860543 1.080504267 0.373532899 0.095177815 0.260873097 12.88788377 0.057124217 0.026799555 4.40E-09 8.356385367 0.173643724 HQPWQSPERPLS(ph)RLSPER ddPTM_K562_Paclitaxel_30min_R1 2 HQPWQSPERPLSRLSPER 18 2 V9GYS7;E7ES68;G5E9D5;Q9BQ52-2;Q9BQ52;J3QRS2;V9GYU5;J3QL08 V9GYS7 ELAC2 Zinc phosphodiesterase ELAC protein 2 1 HQPWQS(0.001)PERPLS(0.906)RLS(0.092)PER;HQPWQS(0.032)PERPLS(0.888)RLS(0.08)PER 61.649 0.020706 79459000 2200 2064.02 3142.7 2446.8 2017.22 2431.5 1927.71 2559.4 1204.18 3056.1 TRUE FALSE 2230.806788 2289.376684 2349.286517 2289.873199 2291.999516 2862.692385 2293.482909 2341.962995 1319.846869 2433.265142 0.916795605 0.9408661 0.965487269 0.941070153 0.941944006 1.176481895 0.942553637 0.962477518 0.542418024 1 11.24867782 -8.568637808 24.99532505 0.764954327 0.976660068 0.299295339 0.123823474 141.0852955 77063.67178 0.078459232 0.029654812 2.70E-09 8.568637808 0.211705742 HQQDS(ph)DLSAACSDADLHR ddPTM_K562_Paclitaxel_30min_R1 2 HQQDSDLSAACSDADLHR 18 0 Q9H9J4-2;Q9H9J4 Q9H9J4-2 USP42 Ubiquitin carboxyl-terminal hydrolase 42 1 HQQDS(0.997)DLS(0.003)AACSDADLHR;HQQDS(1)DLSAACSDADLHR 119.18 9.25E-05 86818000 2738.9 2876.2 4617 3562.1 3229.4 3082.7 1951.89 2865.13 2012.93 2440.6 TRUE FALSE 2777.25305 3190.233243 3451.381248 3333.642849 3669.298954 3629.373562 2322.250938 2621.719323 2206.280921 1943.20438 1.429213045 1.641738396 1.776128792 1.715538974 1.888272274 1.867726112 1.19506263 1.349173226 1.135382846 1 10.92422193 -7.770716899 24.99974764 1.199002276 1.72625142 0.774297988 0.145072009 101.3729519 273162.7301 0.063031116 0.043150981 1.70E-08 7.770716899 0.527249144 HQQQLLAS(ph)PGSSTVDNK ddPTM_K562_Paclitaxel_30min_R1 1 HQQQLLASPGSSTVDNK 17 0 F2Z2X4;Q9C0E2 F2Z2X4 XPO4 Exportin-4 1 HQQQLLAS(0.982)PGS(0.011)S(0.003)T(0.004)VDNK 105.02 0.0013857 15312000 1083.1 1217.9 2040.5 1352.4 1029.8 1115.4 826.55 1152.6 1035.5 1674.6 TRUE FALSE 1098.266742 1350.874441 1525.350538 1265.663117 1170.076195 1313.200529 983.3835476 1054.679436 1134.964402 1333.315601 0.823711011 1.013169305 1.144028119 0.949259962 0.877568817 0.984913496 0.73754747 0.791020097 0.851234622 1 10.3808026 -7.173872411 1.438876794 0.838642273 0.992956578 0.19153872 0.104852975 0.559254629 2.334591131 0.047187971 0.04580417 6.70E-08 7.173872411 0.154314305 HQTFAHEVDGR ddPTM_K562_Paclitaxel_30min_R1 2 HQTFAHEVDGR 11 0 P02549-2;P02549 P02549-2 SPTA1 "Spectrin alpha chain, erythrocytic 1" 0 ; 137.01 0.0006205 4952000 1332.4 1069.02 1498.87 1627.68 1249.1 978.08 1000.87 1342.75 880.41 1526.77 FALSE TRUE 1351.057711 1185.739219 1120.461731 1523.28789 1419.248567 1151.528755 1190.779858 1228.675006 964.9773143 1215.613436 1.111420515 0.975424575 0.921725359 1.253102216 1.167516355 0.947282023 0.979571155 1.010744839 0.793819224 1 10.24746881 -7.290513443 23.49314178 0.949035427 1.079878839 0.313719765 0.10297465 493.4994178 398767.1721 0.038619154 0.034067212 5.12E-08 7.290513443 0.130843412 HRAEAPPLEREDS(ph)GTFSLGK ddPTM_K562_Paclitaxel_30min_R1 2 HRAEAPPLEREDSGTFSLGK 20 2 G5E9Q4;O75569 G5E9Q4 PRKRA Interferon-inducible double-stranded RNA-dependent protein kinase activator A 1 HRAEAPPLEREDS(0.766)GT(0.135)FS(0.099)LGK;HRAEAPPLEREDS(0.905)GT(0.066)FS(0.029)LGK 65.365 0.0096011 134147000 4696.3 4062.2 7451.4 4831.7 3742.4 3689.4 3725.6 4970.7 4151.3 6454.3 TRUE FALSE 4762.062689 4505.724733 5570.201912 4521.816388 4252.178239 4343.663288 4432.513151 4548.408009 4550.050914 5138.910117 0.92666783 0.876786056 1.083926705 0.879917392 0.827447483 0.845249905 0.862539537 0.885091956 0.885411655 1 12.3272467 -6.479291657 24.99987957 0.873521175 0.958564349 0.223676971 0.065372474 618.6200404 354816.4325 0.017889895 0.026533145 3.32E-07 6.479291657 0.085043174 HRGPGLAS(ph)GQLY(ph)S(ph)Y(ph)PARR ddPTM_K562_Paclitaxel_30min_R1 1 HRGPGLASGQLYSYPARR 18 2 J3KMZ8;Q92785;Q92785-2;E9PN04 J3KMZ8 DPF2 Zinc finger protein ubi-d4 4 HRGPGLAS(1)GQLY(1)S(1)Y(1)PARR 45.413 0.028388 93035000 0 0 59.278 0 0 0 0 0 0 0 TRUE FALSE 0 0 44.31253576 0 0 0 0 0 0 0 0 HRHS(ph)PTGPPGFPR ddPTM_K562_Paclitaxel_30min_R1 1 HRHSPTGPPGFPR 13 1 P98175-5;P98175-2;P98175 P98175-5 RBM10 RNA-binding protein 10 1 HRHS(0.989)PT(0.011)GPPGFPR 71.98 0.02915 44495000 2073.4 2104.6 2454 2274.7 2018.9 1755.4 1775.4 1899 1486.9 2129.6 TRUE FALSE 2102.433997 2334.387345 1834.457349 2128.810923 2293.90836 2066.695543 2112.272882 1737.668097 1629.723389 1695.586351 1.239945106 1.376743416 1.08190146 1.255501333 1.352870267 1.218867763 1.24574775 1.024818403 0.961156232 1 10.72756854 -8.298916441 3.480524513 0.982747663 1.255737941 0.712212809 0.075397927 0.133540933 3.363512757 0.045539556 0.020809766 5.02E-09 8.298916441 0.272990278 HRQAST(ph)PPTRPESIFVPTAQDGAQMVCK ddPTM_K562_Paclitaxel_30min_R1 1 HRQASTPPTRPESIFVPTAQDGAQMVCK 28 2 Q9BRP9 Q9BRP9 Putative uncharacterized protein MGC13053 1 HRQAS(0.431)T(0.479)PPT(0.09)RPESIFVPTAQDGAQMVCK 46.54 0.017095 7405500 623.11 610.81 530.14 670.71 479.23 682.63 601.2 938.02 406.14 619.36 TRUE FALSE 631.8354625 677.5003014 396.2996003 627.6936626 544.5092394 803.6848459 715.2745615 858.3293461 445.1515617 493.134092 1.28126502 1.373866282 0.803634563 1.272866088 1.104180888 1.629749107 1.450466664 1.740559738 0.902698817 1 8.945836184 -7.22840376 24.8400063 1.397590689 1.164322503 0.076629319 0.279355726 1196.280496 899503.0122 0.089370744 0.089364781 5.91E-08 7.22840376 -0.233268186 HRWPT(ph)GDNIHAEHQVR ddPTM_K562_Paclitaxel_30min_R1 3 HRWPTGDNIHAEHQVR 16 1 H0YEH2;Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;E9PR38;Q14671-4 H0YEH2 PUM1 Pumilio homolog 1 1 HRWPT(1)GDNIHAEHQVR;HRWPT(1)GDNIHAEHQVR;HRWPT(1)GDNIHAEHQVR 77.899 0.0092763 250350000 6619.7 6025.7 7120.6 6038.7 4729.3 5108.5 5094.1 5917.4 6158.9 7021.6 TRUE FALSE 6712.396224 6683.606304 5322.916464 5651.40481 5373.510728 6014.420748 6060.678882 5414.679935 6750.489864 5590.594066 1.200658847 1.19550914 0.952120007 1.010877331 0.961169898 1.07581067 1.084084949 0.968533911 1.207472727 1 12.44878588 -5.742633353 24.85353663 1.031453053 1.198084196 0.455904483 0.072345584 194.1733216 256609.9603 0.017890094 0.047154184 1.81E-06 5.742633353 0.166631143 HS(ph)FNSFR ddPTM_K562_Paclitaxel_30min_R1 1 HSFNSFR 7 0 P51828 P51828 ADCY7 Adenylate cyclase type 7 1 HS(0.988)FNS(0.012)FR 84.743 0.02984 2441000 100.4 369.54 235.97 44.412 253.55 118.87 120.08 240.7 225.21 182.88 TRUE FALSE 101.8059098 409.8876269 176.3964551 41.5636131 288.0878026 139.9499255 142.8645531 220.2510326 246.8424268 145.6089556 0.699173408 2.814989127 1.211439601 0.285446818 1.978503324 0.961135425 0.981152241 1.512620097 1.695242066 1 7.18595528 -5.933175948 24.99998981 1.19891083 1.821117513 0.103585993 0.646297162 103.0272249 38541.97708 0.160989871 0.335127166 1.17E-06 5.933175948 0.622206683 HS(ph)LEEGLDMVNR ddPTM_K562_Paclitaxel_30min_R1 2 HSLEEGLDMVNR 12 0 Q7Z309-5;Q7Z309;Q7Z309-2 Q7Z309-5 FAM122B Protein FAM122B 1 HS(1)LEEGLDMVNR;HS(1)LEEGLDMVNR 129.77 0.00064745 15540700 2357.2 2398.9 3235.8 2452.2 2047.85 2158.67 1986.6 2958.1 1207.96 2715.1 TRUE FALSE 2390.208073 2660.820015 2418.88227 2294.926868 2326.80184 2541.479815 2363.546979 2706.790941 1323.989955 2161.76113 1.105676312 1.230857553 1.118940588 1.061600579 1.076345489 1.175652472 1.093343269 1.252123051 0.612458952 1 11.0779914 -8.753044555 24.99996048 0.806229436 1.136678605 0.614685006 0.105470771 97.785466 291213.3145 0.068311461 0.02487407 1.77E-09 8.753044555 0.330449169 HS(ph)QPSPEPHSPTEPPAWGSSIVK ddPTM_K562_Paclitaxel_30min_R1 1 HSQPSPEPHSPTEPPAWGSSIVK 23 0 Q5VZ89-5;Q5VZ89-3;Q5VZ89;Q5VZ89-7 Q5VZ89-5 DENND4C DENN domain-containing protein 4C 1 HS(0.363)QPS(0.318)PEPHS(0.279)PT(0.04)EPPAWGSSIVK 53.259 0.021514 5268700 809.52 1015.1 1477.6 1114.7 751.44 775.02 702.2 859.73 737.71 1220.3 TRUE FALSE 820.8557776 1125.932051 1104.561605 1043.208131 853.79885 912.4589152 835.4387843 786.6905702 808.5703417 971.6021902 0.844847599 1.158840585 1.136845528 1.073698826 0.878753525 0.939128096 0.859856835 0.809683817 0.832203087 1 9.924221932 -6.76274265 24.90670385 0.878377218 1.067027434 0.426617336 0.094015616 28.97130605 553672.711 0.028563892 0.034190538 1.73E-07 6.76274265 0.188650216 HS(ph)S(ph)SS(ph)PKSKRR ddPTM_K562_Paclitaxel_30min_R1 1 HSSSSPKSKRR 11 3 A7MD48 A7MD48 SRRM4 Serine/arginine repetitive matrix protein 4 3 HS(1)S(1)S(0.285)S(0.715)PKSKRR 79.82 0.016989 21914000 2374.3 2037.7 4023.1 2509.4 1606.8 1371 1339.6 2187 2601.4 2460.9 TRUE FALSE 2407.547525 2260.182977 3007.418648 2348.458316 1825.673363 1614.1276 1593.782107 2001.200699 2851.276093 1959.367229 1.228737262 1.153526987 1.534892798 1.19857997 0.931766815 0.823800447 0.813416741 1.0213505 1.455202502 1 10.9361721 -6.611609831 4.987479271 0.991319244 1.301903841 0.33533749 0.19028447 0.24313846 10.29393113 0.060158651 0.078542218 2.45E-07 6.611609831 0.310584597 HS(ph)SIS(ph)PVRLPLNSSLGAELSR ddPTM_K562_Paclitaxel_30min_R1 1 HSSISPVRLPLNSSLGAELSR 21 1 J3QSD7;Q9NYV4-3;Q9NYV4-2;Q9NYV4 J3QSD7 CDK12 Cyclin-dependent kinase 12 2 HS(0.558)S(0.558)IS(0.884)PVRLPLNSSLGAELSR 82.367 0.0020889 8628900 1011.1 817.46 1368.3 998.64 715.66 876.23 858.87 1045.4 817.4 1116.6 TRUE FALSE 1025.25852 906.7130473 1022.855742 934.5917001 813.1450082 1031.617088 1021.836099 956.5867448 895.9149222 889.0363071 1.153224577 1.019883035 1.150521901 1.051241319 0.914636446 1.16037678 1.149374993 1.075981641 1.007737159 1 9.796098528 -8.761730364 5.111198025 1.001417031 1.082714104 0.163665215 0.072968404 0.337000281 24.53923353 0.063390196 0.019077038 1.73E-09 8.761730364 0.081297074 HS(ph)SNPPLESHVGWVMDSR ddPTM_K562_Paclitaxel_30min_R1 1 HSSNPPLESHVGWVMDSR 18 0 Q6PKG0;Q6PKG0-3;H0YC33;H0YBR8 Q6PKG0 LARP1 La-related protein 1 1 HS(0.838)S(0.162)NPPLESHVGWVMDSR 167.34 5.32E-10 97545000 724.24 894.96 964.12 947.78 762.49 1012.4 879.21 803.96 984.03 1117.3 TRUE FALSE 734.3815945 992.6747594 720.7159819 886.9936329 866.3540471 1191.934925 1046.035508 735.6585798 1078.550478 889.5936467 0.825524774 1.11587438 0.81016314 0.997077302 0.973876163 1.339864476 1.175857664 0.826960245 1.212408027 1 9.797002674 -7.028031466 24.82166993 1.110101665 0.946431799 0.237948684 0.149778585 1043.733505 924216.5229 0.04928204 0.049395943 9.37E-08 7.028031466 -0.163669866 HSADGIPPTVLRS(ph)PVGLSSDGISSSSSSSR ddPTM_K562_Paclitaxel_30min_R1 2 HSADGIPPTVLRSPVGLSSDGISSSSSSSR 30 1 O60583-2;O60583 O60583-2 CCNT2 Cyclin-T2 1 HSADGIPPT(0.259)VLRS(0.625)PVGLS(0.079)S(0.034)DGIS(0.001)S(0.001)S(0.001)SSSSR;HS(0.001)ADGIPPT(0.257)VLRS(0.74)PVGLS(0.001)S(0.002)DGISSSSSSSR 71.289 0.00012071 68929000 1517.91 1629.14 2299.2 1846.58 1522.56 1755.76 1295.51 1541.12 1420.17 1963.54 TRUE FALSE 1539.165423 1807.015015 1718.738524 1728.148624 1729.958449 2067.119384 1541.326259 1410.192237 1556.583674 1563.36947 0.984518025 1.155846426 1.099380893 1.105400007 1.106557651 1.322220642 0.985900191 0.902021092 0.995659506 1 10.61044305 -7.971532415 24.99855616 0.958096162 1.129044918 0.472195141 0.081962959 171.2475035 150379.2201 0.033824299 0.022803913 1.07E-08 7.971532415 0.170948756 HSAIS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 HSAISPK 7 0 A0A0C4DGZ1;Q8N5P1 A0A0C4DGZ1 ZC3H8 Zinc finger CCCH domain-containing protein 8 1 HSAIS(1)PK;HSAIS(1)PK 105.1 0.0052964 7972400 6557.6 5414.8 13078 8872.3 5950.3 5332.5 4958.7 7573.1 6356.7 9136.9 TRUE FALSE 6649.426632 6006.006176 9776.297153 8303.270389 6760.831599 6278.144003 5899.587439 6929.717885 6967.289437 7274.794765 0.91403632 0.82559115 1.343858826 1.141375208 0.929350149 0.862999467 0.810962732 0.952565414 0.957730034 1 12.82869083 -6.882617404 6.964779667 0.906231135 1.059728024 0.19190077 0.137137237 0.376236079 21.46007302 0.046147689 0.052493711 1.31E-07 6.882617404 0.153496888 HSCSPMGDGDPEAMEES(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 HSCSPMGDGDPEAMEESPR 19 0 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 HSCSPMGDGDPEAMEES(1)PR 184.2 7.23E-16 20702000 674.71 641.79 919.97 662.4 707.6 656.9 652.47 830.17 481.06 792.15 TRUE FALSE 684.1580217 711.8628026 687.7121955 619.9166288 803.9870998 773.3919917 776.2727764 759.6418767 527.2679624 630.7093952 1.084743666 1.128670047 1.090378867 0.982887893 1.274734618 1.226225576 1.230793107 1.204424546 0.835991927 1 9.300831614 -8.756839255 24.99999599 0.917995931 1.153408848 0.523159321 0.089688139 87.77993424 477072.2644 0.069799833 0.024405491 1.75E-09 8.756839255 0.235412917 HSCSPMGDGDPEAMEES(ph)PRKK ddPTM_K562_Paclitaxel_30min_R1 1 HSCSPMGDGDPEAMEESPRKK 21 2 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 HSCSPMGDGDPEAMEES(1)PRKK 53.519 0.020954 14148000 1534.9 1230.3 2896.8 1763.1 1319.6 912.18 1163.7 1908.3 1569.2 2621.4 TRUE FALSE 1556.393336 1364.628315 2165.467013 1650.022657 1499.351861 1073.942315 1384.506 1746.178004 1719.928671 2087.157241 0.745700087 0.653821517 1.037519824 0.790559822 0.718370342 0.514547871 0.663345326 0.836629828 0.824053233 1 11.02732358 -9.040252247 1.617338492 0.995625508 0.738061759 0.278934267 0.1273509 0.627660812 3.681867929 0.132194161 0.038375219 9.11E-10 9.040252247 -0.25756375 HSDSGTSEASLS(ph)PPS(ph)SPPSRPR ddPTM_K562_Paclitaxel_30min_R1 1 HSDSGTSEASLSPPSSPPSRPR 22 1 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 2 HSDSGTSEAS(0.004)LS(0.995)PPS(0.54)S(0.46)PPS(0.002)RPR 109.26 7.32E-05 10792000 1788.6 1825.1 2913.7 1978.7 1919.2 2112.1 1667.1 2260.3 1725.8 2604.2 TRUE FALSE 1813.645918 2024.37059 2178.100399 1851.795038 2180.627532 2486.65128 1983.423522 2068.273407 1891.570801 2073.462611 0.874694296 0.976323653 1.05046524 0.893093046 1.051684039 1.199274714 0.956575495 0.997497325 0.912276301 1 11.01782632 -5.312772227 3.193174634 1.010283011 0.862222861 0.193488698 0.081039896 0.502923248 8.309201407 0.021526587 0.172012119 4.87E-06 5.312772227 -0.148060149 HSDSGTSEASLS(ph)PPSS(ph)PPSRPR ddPTM_K562_Paclitaxel_30min_R1 5 HSDSGTSEASLSPPSSPPSRPR 22 1 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 2 HSDSGT(0.001)S(0.001)EAS(0.023)LS(0.969)PPS(0.226)S(0.773)PPS(0.007)RPR;HS(0.003)DS(0.01)GT(0.012)S(0.003)EAS(0.096)LS(0.847)PPS(0.279)S(0.743)PPS(0.008)RPR;HS(0.001)DSGT(0.001)SEAS(0.017)LS(0.961)PPS(0.176)S(0.839)PPS(0.004)RPR;HSDSGT(0.001)S(0.001)EAS(0.027)LS(0.896)PPS(0.319)S(0.723)PPS(0.033)RPR;HSDSGTSEAS(0.043)LS(0.957)PPS(0.217)S(0.779)PPS(0.005)RPR 94.276 2.98E-05 115695000 5181 5075.03 7215.46 6099.26 5014.15 4785.75 4579.92 6059.23 5122.49 6438.18 TRUE FALSE 5253.549985 5629.138938 5393.827883 5708.080763 5697.16212 5634.435567 5448.935911 5544.460591 5614.528052 5126.075382 1.024867875 1.09813815 1.05223343 1.113538202 1.111408182 1.099171422 1.06298396 1.081619012 1.095287844 1 12.32363898 -10.81258026 13.03095488 0.999999335 1.08343637 0.45972343 0.026680011 0 0 0.025555411 0.006198098 1.54E-11 10.81258026 0.083437035 HSGNITFDEIVNIAR ddPTM_K562_Paclitaxel_30min_R1 2 HSGNITFDEIVNIAR 15 0 P30050;P30050-2 P30050 RPL12 60S ribosomal protein L12 0 ; 112.12 0.003801 17357700 1056.58 1162.54 1238.9 1184.75 1068.18 1047.62 1063.06 1227.3 1466.11 1622.9 FALSE TRUE 1071.37538 1289.470049 926.1243725 1108.765438 1213.6842 1233.400698 1264.770085 1123.033204 1606.936416 1292.152089 0.829140307 0.997924362 0.716730159 0.858076574 0.939273488 0.954532139 0.978808993 0.869118437 1.243612443 1 10.33556017 -7.888405315 0.78339801 1.067625341 0.857499235 0.362383132 0.105545934 0.761132356 0.894376032 0.088179892 0.049200203 1.29E-08 7.888405315 -0.210126106 HSGPNS(ph)ADSANDGFVR ddPTM_K562_Paclitaxel_30min_R1 1 HSGPNSADSANDGFVR 16 0 P52597 P52597 HNRNPF "Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed" 1 HSGPNS(0.996)ADS(0.004)ANDGFVR 139.74 1.04E-08 8924900 624.35 706.16 644.51 733.5 482.45 391.1 659.9 926.36 548.93 649.98 TRUE FALSE 633.0928263 783.2609369 481.7954793 686.456593 548.1678579 460.4560937 785.1125801 847.6599358 601.6571792 517.5137192 1.223335349 1.51350758 0.930981076 1.326451005 1.05923348 0.889746642 1.51708554 1.637946791 1.162591748 1 9.015453299 -7.788811886 24.99967748 1.382568182 1.166360564 0.094186919 0.238923133 426.8518909 389845.3432 0.099413601 0.067042513 1.63E-08 7.788811886 -0.216207617 HSIS(ph)MPAMR ddPTM_K562_Paclitaxel_30min_R1 2 HSISMPAMR 9 0 O43399-5;O43399-7;O43399-4;O43399-3;E9PNK6;J3KNE7;Q16890-2;Q16890-5;Q16890 O43399-5 TPD52L2;TPD52L1 Tumor protein D54;Tumor protein D53 1 HS(0.414)IS(0.586)MPAMR;HS(0.02)IS(0.98)MPAMR 85.813 0.017675 10298700 5126.2 4246 5402 4204.8 4288.2 4403.4 4511.1 5089.8 3253.8 6624.5 TRUE FALSE 5197.982616 4709.592639 4038.198289 3935.122948 4872.32544 5184.281163 5367.057675 4657.38972 3566.342028 5274.423264 0.985507297 0.892911396 0.765618929 0.746076443 0.923764589 0.982909582 1.017562946 0.883014026 0.676157724 1 12.36479763 -5.290729534 4.675332277 0.873798588 0.989821616 0.084297749 0.108755725 0.473670397 25.70085608 0.029030589 0.164473303 5.12E-06 5.290729534 0.116023028 HSLDS(ph)DEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVR ddPTM_K562_Paclitaxel_30min_R1 1 HSLDSDEEEDDDDGGSSKYDILASEDVEGQEAATLPSEGGVR 42 1 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 HS(0.104)LDS(0.759)DEEEDDDDGGS(0.044)S(0.044)KY(0.04)DILAS(0.008)EDVEGQEAATLPSEGGVR 48.671 0.00026509 36175000 226.62 148.85 288.93 196.76 220.8 162.88 47.209 248.33 131.35 132.92 TRUE FALSE 229.7933792 165.1019464 215.9860481 184.1406943 250.8766982 191.7644811 56.1666613 227.2328165 143.9667544 105.830831 2.171327362 1.560055277 2.040861306 1.739953211 2.370544535 1.811990695 0.530721159 2.147132497 1.360347953 1 6.72561617 -7.54359702 24.99818175 1.328889089 1.958581691 0.382631191 0.429431923 280.4310718 338358.4997 0.15866024 0.122909373 2.86E-08 7.54359702 0.629692602 HSLGLTVS(ph)PCR ddPTM_K562_Paclitaxel_30min_R1 2 HSLGLTVSPCR 11 0 G5E9D9;A0A0C4DFZ6;Q9H972-2;Q9H972 G5E9D9 C14orf93 Uncharacterized protein C14orf93 1 HSLGLT(0.235)VS(0.765)PCR;HSLGLTVS(1)PCR 120.29 0.0021307 28083000 3360.5 3089.9 4886.7 3446.9 2843.8 3041.8 2782.6 3578.8 3705.5 3962.4 TRUE FALSE 3407.557368 3427.265731 3652.992147 3225.831262 3231.173706 3581.220521 3310.583824 3274.758602 4061.429832 3154.860705 1.080097566 1.08634455 1.157893324 1.022495623 1.024189024 1.135143785 1.049359745 1.038004181 1.287356309 1 11.62336059 HSLSGS(ph)SPGMK ddPTM_K562_Paclitaxel_30min_R1 1 HSLSGSSPGMK 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 HSLS(0.008)GS(0.496)S(0.496)PGMK 173.04 0.00043659 15496000 2548.2 2536.3 5751.8 3797.9 2555.2 2526.4 2025.1 2833.1 1580.1 3452.8 TRUE FALSE 2583.882662 2813.221811 4299.686953 3554.319693 2903.2615 2974.421568 2409.352153 2592.410471 1731.875665 2749.117465 0.939895328 1.023318155 1.564024458 1.292894807 1.056070371 1.081955066 0.876409315 0.942997345 0.629975142 1 11.42475284 -7.574881676 1.461125887 0.838618119 1.204784569 0.397501431 0.183152357 0.42949178 1.866223509 0.103018101 0.072046391 2.66E-08 7.574881676 0.36616645 HSLSGSS(ph)PGMK ddPTM_K562_Paclitaxel_30min_R1 1 HSLSGSSPGMK 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 HSLS(0.002)GS(0.224)S(0.774)PGMK 158.06 0.0006894 15854000 4322.7 4077.2 10066 5842.7 4093.8 3677.6 3489.6 5624.4 3239.1 5968 TRUE FALSE 4383.231137 4522.362484 7524.713805 5467.975373 4651.444869 4329.770724 4151.733383 5146.572114 3550.230028 4751.718324 0.922451803 0.951732021 1.583577412 1.150736428 0.978897433 0.91120105 0.873733058 1.083097053 0.747146566 1 12.2142336 -6.811852409 4.180006282 0.928111023 1.169921454 0.253116856 0.185886108 0.309686118 11.22373875 0.06108235 0.072216125 1.54E-07 6.811852409 0.241810431 HSLSGSS(ph)PGMKDIPR ddPTM_K562_Paclitaxel_30min_R1 1 HSLSGSSPGMKDIPR 15 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 HS(0.001)LS(0.047)GS(0.047)S(0.905)PGMKDIPR 82.663 0.016096 22869000 1367.3 1446.6 3206.5 2070.3 1655.8 1433 996.83 1224.9 1121 1556.2 TRUE FALSE 1386.446418 1604.54468 2396.979418 1937.520224 1881.347993 1687.12243 1185.973289 1120.837099 1228.677059 1239.045586 1.118963204 1.29498438 1.934536909 1.563719888 1.518384807 1.361630637 0.957166792 0.904597145 0.991631844 1 10.27501355 -7.672509138 3.270367745 0.94957834 1.501311788 0.612638554 0.197098714 0.176283328 3.750207233 0.089815513 0.065590893 2.13E-08 7.672509138 0.551733448 HSMGPGGYGDNLGGGQMYS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 HSMGPGGYGDNLGGGQMYSPR 21 0 P40425 P40425 PBX2 Pre-B-cell leukemia transcription factor 2 1 HSMGPGGYGDNLGGGQMYS(1)PR;HSMGPGGYGDNLGGGQMYS(1)PR 170.58 4.07E-19 70641000 3060 2878.7 4001 3448.9 2973.6 2482.7 2367.9 2840.1 3020.4 3442.2 TRUE FALSE 3102.849441 3193.006201 2990.898066 3227.702991 3378.654663 2922.971986 2817.196664 2598.815778 3310.522916 2740.677751 1.132146762 1.165042552 1.0912987 1.177702483 1.23278071 1.06651429 1.027919705 0.948238361 1.207921258 1 11.42031699 -7.442302973 7.160807737 1.042409364 1.157081658 0.379984288 0.070321486 0.283104684 21.8420099 0.024399416 0.021410123 3.61E-08 7.442302973 0.114672294 HSPAPQCPS(ph)PSPPAR ddPTM_K562_Paclitaxel_30min_R1 1 HSPAPQCPSPSPPAR 15 0 A7MCY6 A7MCY6 TBKBP1 TANK-binding kinase 1-binding protein 1 1 HSPAPQCPS(0.987)PS(0.013)PPAR 83.948 0.015449 2574900 515.2 615.66 578.83 752.72 666.14 567.68 370.98 318.72 648.86 528 TRUE FALSE 522.4143895 682.8798408 432.6972076 704.4439083 756.8795458 668.3500774 441.3715184 291.6427466 711.1859022 420.3933102 1.242680073 1.624383225 1.029267586 1.675678207 1.80040816 1.589820916 1.049901384 0.693737839 1.691715555 1 8.715595901 -7.766111772 24.93379386 1.08331676 1.500747817 0.268114623 0.310239982 149.9592093 800231.8459 0.126323201 0.088340832 1.71E-08 7.766111772 0.417431057 HSQEQGS(ph)GGQASAASNPPSFFTTPTSDGAFELAPT ddPTM_K562_Paclitaxel_30min_R1 1 HSQEQGSGGQASAASNPPSFFTTPTSDGAFELAPT 35 0 Q99956 Q99956 DUSP9 Dual specificity protein phosphatase 9 1 HS(0.297)QEQGS(0.693)GGQAS(0.009)AAS(0.001)NPPSFFTTPTSDGAFELAPT 51.28 0.00213 11274000 393.99 525.92 299.9 522.55 458.32 341.39 351.87 603.19 411.49 442.29 TRUE FALSE 399.5070756 583.3417241 224.1865359 489.0359818 520.7509434 401.9307231 418.6354956 551.9452445 451.0154531 352.1510552 1.13447644 1.656509942 0.636620372 1.388710823 1.478771498 1.141358849 1.188795233 1.567353658 1.28074429 1 8.460050596 HSQPAT(ph)PTPLQSR ddPTM_K562_Paclitaxel_30min_R1 1 HSQPATPTPLQSR 13 0 Q9NR12-2;Q9NR12 Q9NR12-2 PDLIM7 PDZ and LIM domain protein 7 1 HSQPAT(0.983)PT(0.017)PLQSR 94.639 0.012525 12532000 923.83 1025 1191.4 1064.2 921.5 877.02 660.62 1022.8 658.35 1150 TRUE FALSE 936.7664703 1136.912966 890.616335 995.9469752 1047.023901 1032.547183 785.9691963 935.9067559 721.5874591 915.6293688 1.023084779 1.241673766 0.972682141 1.087718469 1.143501876 1.127691202 0.858392296 1.022145846 0.788078106 1 9.838619928 -7.75479256 24.98646765 0.918999543 1.101574244 0.489600664 0.091130443 127.5088332 479328.1698 0.033474432 0.025320363 1.76E-08 7.75479256 0.182574701 HSQPS(ph)PEPHS(ph)PTEPPAWGSSIVK ddPTM_K562_Paclitaxel_30min_R1 2 HSQPSPEPHSPTEPPAWGSSIVK 23 0 Q5VZ89-5;Q5VZ89-3;Q5VZ89;Q5VZ89-7 Q5VZ89-5 DENND4C DENN domain-containing protein 4C 2 HS(0.055)QPS(0.896)PEPHS(0.898)PT(0.151)EPPAWGSSIVK;HS(0.03)QPS(0.969)PEPHS(0.963)PT(0.038)EPPAWGSSIVK 85.19 0.0011046 28792000 3730.5 3905.9 6884.9 4563.6 3751 2650.8 2437.9 4648.9 2899.5 5190.4 TRUE FALSE 3782.73851 4332.359371 5146.721844 4270.911122 4261.949705 3120.882161 2900.478798 4253.946927 3178.00993 4132.593631 0.915342482 1.048339072 1.245397516 1.033469899 1.031301426 0.755187284 0.701854346 1.029364924 0.769010993 1 12.01283179 -7.136104403 5.346100967 0.844346944 1.068159134 0.410031218 0.122102097 0.227265598 8.975126191 0.041287923 0.041419132 7.31E-08 7.136104403 0.22381219 HSQPSPEPHSPT(ph)EPPAWGSSIVK ddPTM_K562_Paclitaxel_30min_R1 1 HSQPSPEPHSPTEPPAWGSSIVK 23 0 Q5VZ89-5;Q5VZ89-3;Q5VZ89;Q5VZ89-7 Q5VZ89-5 DENND4C DENN domain-containing protein 4C 1 HS(0.002)QPS(0.005)PEPHS(0.033)PT(0.96)EPPAWGSSIVK 77.221 0.0012035 9176500 1477.5 1499.2 2664.5 1905 1233 1174.9 896.75 1636.1 1248.8 1710.8 TRUE FALSE 1498.189558 1662.887726 1991.814021 1782.821826 1400.955475 1383.252019 1066.903631 1497.103093 1368.75282 1362.138021 1.099880875 1.220792387 1.462270336 1.308840807 1.028497445 1.01550063 0.783256627 1.099083257 1.004856188 1 10.41165718 -6.82461225 4.734780588 0.979954612 1.283153564 0.607009607 0.112320783 0.144525363 6.372809912 0.037260794 0.043375327 1.50E-07 6.82461225 0.303198952 HSQQLFPDGS(ph)PGDQWVK ddPTM_K562_Paclitaxel_30min_R1 1 HSQQLFPDGSPGDQWVK 17 0 H0Y9T5;Q8IU60-2;Q8IU60 H0Y9T5 DCP2 m7GpppN-mRNA hydrolase 1 HSQQLFPDGS(1)PGDQWVK 99.891 0.0029673 0 569.33 474.55 627.18 558.52 343.08 397.57 299.76 607.48 397.98 659.61 TRUE FALSE 577.3023765 526.3629738 468.8406521 522.699027 389.8133044 468.0734573 356.6378951 555.8707822 436.2077572 525.1811199 1.099244346 1.002250374 0.892721833 0.995273835 0.742245465 0.891261014 0.679076002 1.05843634 0.830585375 1 9.036671243 -5.365773835 1.075205423 0.870439168 1.190019482 0.283168264 0.110170675 1.844406548 1.997136919 0.034394254 0.647264918 4.31E-06 5.365773835 0.319580314 HSS(ph)ETFSSTPSATR ddPTM_K562_Paclitaxel_30min_R1 1 HSSETFSSTPSATR 14 0 P35568 P35568 IRS1 Insulin receptor substrate 1 1 HS(0.028)S(0.967)ET(0.001)FS(0.001)S(0.001)T(0.001)PSATR 98.592 0.005171 0 393.11 334.56 454.37 309.51 381.26 344.7 317.05 377.28 448.38 366.92 TRUE FALSE 398.6147528 371.0883922 339.6586739 289.6594139 433.1940668 405.8277052 377.2085824 345.2277091 491.4489024 292.1415026 1.364457803 1.270235105 1.162651218 0.991503814 1.482822752 1.38914773 1.291184508 1.181714019 1.682228982 1 8.190523517 -6.780270863 24.99995 1.347166959 1.199959158 0.115213942 0.189818129 524.6459068 696496.3841 0.057482239 0.065286873 1.66E-07 6.780270863 -0.147207801 HSS(ph)GDPSSEGTSGSGSVSIR ddPTM_K562_Paclitaxel_30min_R1 2 HSSGDPSSEGTSGSGSVSIR 20 0 C9JW56;Q9UPU7-2;Q9UPU7 C9JW56 TBC1D2B TBC1 domain family member 2B 1 HS(0.02)S(0.98)GDPSSEGTSGSGSVSIR;HS(0.002)S(0.496)GDPS(0.496)S(0.006)EGTSGSGSVSIR 229.22 1.82E-46 20128600 3479.6 3584 4401.6 3709.7 2898.5 3024.3 3177.5 3602.9 2478.5 4262.4 TRUE FALSE 3528.325135 3975.31324 3290.361642 3471.776446 3293.324772 3560.617142 3780.414037 3296.811156 2716.570999 3393.72054 1.03966284 1.171373186 0.969544075 1.023000098 0.970417196 1.049178063 1.113943824 0.971444501 0.800469858 1 11.72865205 -8.523269988 24.99692075 0.895475757 1.045723525 0.404946289 0.072410397 13.45081447 859028.2689 0.047074333 0.018158311 3.00E-09 8.523269988 0.150247768 HSS(ph)IS(ph)PVRLPLNSSLGAELSR ddPTM_K562_Paclitaxel_30min_R1 1 HSSISPVRLPLNSSLGAELSR 21 1 J3QSD7;Q9NYV4-3;Q9NYV4-2;Q9NYV4 J3QSD7 CDK12 Cyclin-dependent kinase 12 2 HS(0.222)S(0.808)IS(0.971)PVRLPLNSSLGAELSR 75.945 0.003589 281750000 3761.8 3692 4604.5 4565.3 3470.6 3547.3 3694.4 4857.5 3792.7 5452.9 TRUE FALSE 3814.476806 4095.105046 3442.037027 4272.502092 3943.354478 4176.363848 4395.393114 4444.825055 4157.005781 4341.595987 0.878588615 0.94322573 0.792804544 0.9840856 0.908273015 0.961942074 1.012391095 1.023776756 0.95748333 1 12.08400976 -7.07344895 1.084953523 1.000840524 0.885584623 0.490347195 0.047704868 0.417484687 1.040777464 0.023023107 0.02495931 8.44E-08 7.07344895 -0.1152559 HSS(ph)NPPLESHVGWVMDSR ddPTM_K562_Paclitaxel_30min_R1 5 HSSNPPLESHVGWVMDSR 18 0 Q6PKG0;Q6PKG0-3;H0YC33;H0YBR8 Q6PKG0 LARP1 La-related protein 1 1 HS(0.189)S(0.811)NPPLESHVGWVMDSR;HS(0.069)S(0.931)NPPLESHVGWVMDSR;HS(0.166)S(0.834)NPPLESHVGWVMDSR;HS(0.206)S(0.793)NPPLESHVGWVMDSR;HS(0.206)S(0.794)NPPLESHVGWVMDSR 168.86 3.30E-10 1172596300 5026.41 4575.74 6658.76 5244.06 4615.35 4840.46 4302 5357.98 4445.89 5912.28 TRUE FALSE 5096.795248 5075.334767 4977.673684 4907.729463 5244.038809 5698.847618 5118.282042 4902.786156 4872.937599 4707.354091 1.082730372 1.078171446 1.057424954 1.042566454 1.114009847 1.210626502 1.087294889 1.04151633 1.035175495 1 12.20070066 -8.34605842 3.267076004 1.023209043 1.097134623 0.362355451 0.043613173 0.341107561 6.958187702 0.031171406 0.013411446 4.51E-09 8.34605842 0.07392558 HSSDINHLVT(ph)QGRESPEGSYTDDANQEVR ddPTM_K562_Paclitaxel_30min_R1 1 HSSDINHLVTQGRESPEGSYTDDANQEVR 29 1 A0A075B6Q2;S4R347;Q5T0N5-3;Q5T0N5-4;Q5T0N5-2;Q5T0N5-5;Q5T0N5 A0A075B6Q2 FNBP1L Formin-binding protein 1-like 1 HSSDINHLVT(0.488)QGRES(0.488)PEGS(0.01)Y(0.01)T(0.005)DDANQEVR 51.773 0.013437 27714000 930.04 789.46 999.9 706.25 583.82 670.43 604.7 883.26 575.59 586.26 TRUE FALSE 943.0634294 875.6559126 747.4628784 660.9542861 663.3461682 789.3213472 719.4386683 808.2215499 630.8779913 466.7798902 2.020360022 1.87595038 1.601317653 1.415987064 1.421111282 1.690992615 1.541280341 1.731483225 1.351553494 1 8.866598598 -2 0.046130109 3.50E-13 4.365206954 0.640708046 0.164942089 453.0058939 1.586615571 37.51337471 145.3462105 0.01 2 4.365206954 HSSPHIS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 HSSPHISR 8 0 O60583-2;O60583 O60583-2 CCNT2 Cyclin-T2 1 HSSPHIS(1)R 90.601 0.015697 5766800 188.59 261.11 277.12 317.52 260.6 170.29 316.19 162.75 292.25 204.37 TRUE FALSE 191.2308418 289.6188728 207.1576286 297.1556884 296.098132 200.4885405 376.1854019 148.9233716 320.3219183 162.7192818 1.175219308 1.779868185 1.273098224 1.826186086 1.819686817 1.232112988 2.311867393 0.9152165 1.968555384 1 7.346241407 -11.20422395 3.647361344 0.999334817 1.590102024 0.157959193 0.40802867 1783495071 2813323175 14869862.19 0.092509099 6.25E-12 11.20422395 0.590767207 HSST(ph)PNSSEFSR ddPTM_K562_Paclitaxel_30min_R1 1 HSSTPNSSEFSR 12 0 Q8N9Q2 Q8N9Q2 SREK1IP1 Protein SREK1IP1 1 HS(0.001)S(0.027)T(0.961)PNS(0.01)S(0.001)EFSR 110.8 0.013734 3574400 1564.1 1327.5 1403.9 1383.2 1178.5 1192 1335.7 1189.5 849.43 1451.3 TRUE FALSE 1586.002226 1472.440939 1049.468082 1294.487743 1339.031652 1403.384463 1589.142102 1088.44455 931.0215469 1155.524263 1.372539094 1.274262243 0.908218127 1.120260114 1.158808772 1.214500213 1.375256369 0.941948676 0.805713542 1 10.17433184 -8.415528183 6.949482726 0.893613208 1.189768874 0.490314248 0.134098525 0.223788927 12.53404735 0.078895025 0.037327734 3.84E-09 8.415528183 0.296155666 HSSVYPTQEELEAVQNMVSHTER ddPTM_K562_Paclitaxel_30min_R1 1 HSSVYPTQEELEAVQNMVSHTER 23 0 Q12906;Q12906-7;Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;K7EKJ9;K7ERM6;K7ENK6;K7EM82;K7EJ09;K7ER69 Q12906 ILF3 Interleukin enhancer-binding factor 3 0 129.77 4.03E-09 8706200 1926.1 2162.4 2380.3 2276.3 1826.1 2038.8 1571.7 2229.5 2008 2583.5 FALSE TRUE 1953.071343 2398.498145 1779.363826 2130.308306 2074.845736 2400.352554 1869.92187 2040.090059 2200.877372 2056.981282 0.949484256 1.166028182 0.865036469 1.035647881 1.008684792 1.166929702 0.909061199 0.991788344 1.069954983 1 11.00631295 -4.960812088 16.4889323 1.021531146 0.63050511 0.055747567 0.091223687 9659293.287 109135163 0.021760761 113841012.1 1.09E-05 4.960812088 -0.391026036 HSTENDS(ph)PTNVQQ ddPTM_K562_Paclitaxel_30min_R1 2 HSTENDSPTNVQQ 13 0 B3KVN2;P49354-2;P49354 B3KVN2 FNTA Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha 1 HST(0.002)ENDS(0.992)PT(0.006)NVQQ;HST(0.004)ENDS(0.996)PTNVQQ 190.85 9.93E-05 8666600 4086.5 4225.4 4914.4 4146.7 3338.55 3191.1 2959.3 3824.3 3284.1 4076.5 TRUE FALSE 4143.723608 4686.743461 3673.698939 3880.749222 3793.317032 3756.99678 3520.811726 3499.401844 3599.552479 3245.707062 1.276678249 1.443982273 1.131863988 1.19565603 1.168718236 1.157527992 1.084759548 1.078163179 1.109019517 1 11.66431708 -2 0.189999134 0.994203601 2.68452669 0.674541281 0.066712504 29.66516241 0.346344698 0.131276552 14.70907321 0.01 2 1.690323089 HSTPSNSSNPSGPPS(ph)PNSPHR ddPTM_K562_Paclitaxel_30min_R1 1 HSTPSNSSNPSGPPSPNSPHR 21 0 Q9Y5S2 Q9Y5S2 CDC42BPB Serine/threonine-protein kinase MRCK beta 1 HSTPSNSSNPSGPPS(0.965)PNS(0.035)PHR 180.82 1.34E-22 2942900 735.13 705.8 647.53 704.57 712.44 734.22 372.07 766.28 386.22 546.26 TRUE FALSE 745.4240881 782.8616309 484.053043 659.3820337 809.4863897 864.423608 442.6683402 701.179731 423.3181567 434.9319122 1.713886857 1.799963647 1.112939818 1.516058066 1.861179571 1.987491798 1.017787676 1.612159769 0.973297532 1 8.764645757 -8.552697535 1.156959234 0.982083691 1.619547565 0.373369318 0.297245631 0.544851894 1.341055477 0.281084579 0.097030188 2.80E-09 8.552697535 0.637463873 HSTS(ph)PASSEYSWK ddPTM_K562_Paclitaxel_30min_R1 3 HSTSPASSEYSWK 13 0 Q96N46 Q96N46 TTC14 Tetratricopeptide repeat protein 14 1 HST(0.174)S(0.825)PASSEYSWK;HST(0.024)S(0.976)PASSEYSWK;HST(0.008)S(0.991)PASSEYSWK 133.15 2.42E-05 15872600 9613.1 8079.3 16250.9 10764.5 8973.3 7327.7 6429.22 10474.9 8194.6 12137.4 TRUE FALSE 9747.713059 8961.425296 12148.15931 10074.11315 10195.61538 8627.164709 7649.130932 9584.991863 8981.727944 9663.791218 1.008684153 0.927319837 1.257080066 1.042459727 1.055032663 0.892730867 0.791524854 0.991845917 0.929420736 1 13.23837357 -7.254670294 22.45887231 0.912496119 1.061032755 0.344017826 0.094180414 151.9402805 504115.5809 0.032354801 0.031561999 5.56E-08 7.254670294 0.148536636 HSTSGT(ph)DEGEDGDEPDDGSNDVVDLLPR ddPTM_K562_Paclitaxel_30min_R1 3 HSTSGTDEGEDGDEPDDGSNDVVDLLPR 28 0 Q14008-2;Q14008;Q14008-3 Q14008-2 CKAP5 Cytoskeleton-associated protein 5 1 HS(0.009)T(0.038)S(0.162)GT(0.79)DEGEDGDEPDDGSNDVVDLLPR;HS(0.004)T(0.015)S(0.058)GT(0.923)DEGEDGDEPDDGSNDVVDLLPR;HS(0.009)T(0.043)S(0.204)GT(0.744)DEGEDGDEPDDGSNDVVDLLPR 200.85 1.10E-45 79569000 1503.54 1402.57 1691.18 1658.3 1354.74 1353.25 910.55 1021.15 944.86 1551.65 TRUE FALSE 1524.594199 1555.707336 1264.220693 1551.94406 1539.278524 1593.229887 1083.322109 934.3969337 1035.618025 1235.422878 1.234066671 1.259250871 1.023310087 1.256204728 1.245952743 1.289623104 0.876883639 0.756337729 0.838270072 1 10.27078924 -7.796203328 8.078709286 0.845955673 1.214043002 0.785134722 0.089453718 0.102001233 20.25201806 0.037578422 0.025589262 1.60E-08 7.796203328 0.368087329 HSTSSLS(ph)PQR ddPTM_K562_Paclitaxel_30min_R1 2 HSTSSLSPQR 10 0 Q03164-2;Q03164;Q03164-3 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 HSTSS(0.001)LS(0.999)PQR;HSTSS(0.001)LS(0.998)PQR 101.72 0.0064435 1191380 382.19 250.26 446.37 522.93 443.56 424.28 373.21 445.46 345.19 445.7 TRUE FALSE 387.5418392 277.5842331 333.6783729 489.3916103 503.9803815 499.5201008 444.0246492 407.6153925 378.3470418 354.8660954 1.092079081 0.782222469 0.940293754 1.379088103 1.42019874 1.407629828 1.251245625 1.148645638 1.06616847 1 8.471130933 -6.244078428 21.44617848 1.260276996 0.922600378 0.449297114 0.151033546 111.0966344 137236.2728 0.042810718 0.073765025 5.70E-07 6.244078428 -0.337676617 HSTYS(ph)S(ph)VRPAS(ph)RGVT(ph)QR ddPTM_K562_Paclitaxel_30min_R1 1 HSTYSSVRPASRGVTQR 17 2 Q5M775;Q5M775-4;J3KSG2 Q5M775 SPECC1 Cytospin-B 4 HS(0.009)T(0.049)Y(0.042)S(0.951)S(0.951)VRPAS(0.999)RGVT(1)QR 69.721 0.014036 14571000 0 0 0 0 0 113.6 0 66.506 0 0 TRUE FALSE 0 0 0 0 0 133.745365 0 60.85590018 0 0 0 HSWY(ph)HGPVSR ddPTM_K562_Paclitaxel_30min_R1 1 HSWYHGPVSR 10 0 P00519-2;P00519;P42684-8;P42684-4;P42684-7;P42684-10;P42684-5;P42684-2;P42684-6;P42684-3;P42684 P00519-2;P42684-4 ABL1;ABL2 Tyrosine-protein kinase ABL1;Abelson tyrosine-protein kinase 2 1 HSWY(1)HGPVSR 125.23 0.0044926 6619300 546.45 412.34 493.82 357.36 349.38 322.23 384.83 634.76 345.17 401.39 TRUE FALSE 554.1019859 457.3606756 369.1490335 334.4405291 396.9714711 379.3729662 457.8494836 580.833176 378.3251208 319.5864977 1.733809125 1.431101373 1.155083322 1.046478908 1.242140935 1.187074451 1.432630874 1.817452177 1.183795697 1 8.320062646 -7.789634565 23.5995398 1.426590932 1.2846304 0 0.264910314 390.2689423 326651.3825 0.112975941 0.07619252 1.62E-08 7.789634565 -0.141960533 HT(ph)PLLQT(ph)T(ph)LR ddPTM_K562_Paclitaxel_30min_R1 1 HTPLLQTTLR 10 0 D6RGW2 D6RGW2 NXPH3 3 HT(1)PLLQT(1)T(1)LR 66.326 0.019641 0 3400.6 3088.8 4006.5 3232.1 3042.4 2713.2 2782.1 3021.2 11451 2879.3 TRUE FALSE 3448.218892 3426.04563 2995.009523 3024.807572 3456.826388 3194.347925 3309.988951 2764.530202 12550.91971 2292.49708 1.504132294 1.494460194 1.306439842 1.319437917 1.507886932 1.393392364 1.443835624 1.205903478 5.474781114 1 11.16270418 HTDDEMTGY(ph)VATR ddPTM_K562_Paclitaxel_30min_R1 4 HTDDEMTGYVATR 13 0 Q16539-5;Q16539-3;Q16539-4;Q16539-2;Q16539;E7EX54;B4E0K5 Q16539-5 MAPK14 Mitogen-activated protein kinase 14 1 HTDDEMTGY(0.999)VAT(0.001)R;HTDDEMT(0.031)GY(0.968)VAT(0.001)R;HTDDEMTGY(0.999)VAT(0.001)R;HTDDEMTGY(1)VATR 152.16 9.59E-05 150235000 11493 9180.8 17873.7 12123.8 10450.2 9554 7587.9 10211.3 10338.2 11381 TRUE FALSE 11653.93746 10183.19079 13361.26338 11346.23373 11873.69416 11248.26776 9027.664414 9343.786328 11331.2303 9061.545953 1.286087111 1.123780737 1.47450153 1.252130022 1.31033868 1.241318845 0.996260954 1.031147045 1.250474297 1 13.14554149 -7.633776357 5.540599569 1.073174128 1.287105334 0.502096012 0.104094146 0.181640255 8.158702713 0.040046657 0.030703496 2.32E-08 7.633776357 0.213931206 HTEVLPAEEENDSLGADGT(ph)HGAGAMESAAGVLIK ddPTM_K562_Paclitaxel_30min_R1 1 HTEVLPAEEENDSLGADGTHGAGAMESAAGVLIK 34 0 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 HT(0.003)EVLPAEEENDS(0.285)LGADGT(0.619)HGAGAMES(0.094)AAGVLIK 50.036 0.0056013 27484000 4161.5 3256.9 5408.4 4278.1 3394.1 2619.2 2705.8 4115.7 3212.6 5193.5 TRUE FALSE 4219.773839 3612.499356 4042.98253 4003.721814 3856.433883 3083.678345 3219.211425 3766.045596 3521.184584 4135.061849 1.020486269 0.873626438 0.977732058 0.968237468 0.932618186 0.745739352 0.778515907 0.910759194 0.85154339 1 12.01369319 -7.02523171 23.66613873 0.845961427 0.954528822 0.302275428 0.073602344 445.302323 417671.4357 0.023802675 0.023921263 9.44E-08 7.02523171 0.108567394 HTGMASIDSSAPETTSDS(ph)SPTLSR ddPTM_K562_Paclitaxel_30min_R1 1 HTGMASIDSSAPETTSDSSPTLSR 24 0 H7BZ52;S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2;H0YCW2;S4R3B3;H7C453;S4R3U7 H7BZ52 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 HTGMASIDSSAPETT(0.011)S(0.15)DS(0.371)S(0.25)PT(0.047)LS(0.17)R 119.28 2.68E-08 28124000 649.35 610.91 736.25 689 547.17 576.49 410.1 523.85 475.03 822.04 TRUE FALSE 658.4429034 677.6112198 550.3745817 644.8106239 621.7038177 678.7224072 487.9143341 479.3456727 520.658754 654.5077968 1.006012314 1.035298927 0.840898435 0.985184022 0.949879926 1.036996672 0.745467566 0.732375802 0.795496641 1 9.354266568 -7.76439247 24.99999489 0.796032971 0.971548741 0.431772909 0.086874733 65.97516535 558514.8562 0.034237053 0.024216197 1.72E-08 7.76439247 0.17551577 HTGPNS(ph)PDTANDGFVR ddPTM_K562_Paclitaxel_30min_R1 12 HTGPNSPDTANDGFVR 16 0 P31943;G8JLB6;E9PCY7;P55795;D6RFM3;D6RJ04;D6RDU3;D6RIU0;D6RIT2;E5RGV0;D6R9T0;D6RBM0;D6RAM1;D6RIH9;H0YAQ2;E5RGH4;E7EQJ0 P31943;E7EQJ0 HNRNPH1;HNRNPH2 "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2" 1 HTGPNS(1)PDTANDGFVR;HTGPNS(1)PDTANDGFVR;HTGPNS(0.972)PDT(0.028)ANDGFVR;HTGPNS(1)PDTANDGFVR;HTGPNS(0.998)PDT(0.002)ANDGFVR;HT(0.01)GPNS(0.988)PDT(0.002)ANDGFVR;HTGPNS(0.993)PDT(0.007)ANDGFVR;HTGPNS(1)PDTANDGFVR;HTGPNS(1)PDTANDGFVR;HTGPNS(1)PDTANDGFVR;HTGPNS(0.91)PDT(0.09)ANDGFVR;HTGPNS(0.997)PDT(0.003)ANDGFVR 298.33 4.43E-177 4093081300 19622.76 21104.29 24863.32 20160.67 17106.2 16481.86 14939.09 18470.06 13216.57 20919.59 TRUE FALSE 19897.53918 23408.52775 18586.26736 18867.65486 19436.35405 19404.68645 17773.70434 16900.91312 14486.0806 16656.16607 1.194604994 1.405397115 1.115879085 1.132772979 1.166916442 1.165015188 1.067094568 1.01469408 0.869712786 1 14.02376874 -7.58968987 0.580906673 0.932125387 1.259769338 0.636863775 0.081272983 0.548798686 0.388431207 0.074386645 0.06464174 2.57E-08 7.58968987 0.32764395 HTGPNS(ph)PDTANDGFVRL ddPTM_K562_Paclitaxel_30min_R1 7 HTGPNSPDTANDGFVRL 17 1 E7EQJ0 E7EQJ0 HNRNPH1 1 HT(0.008)GPNS(0.992)PDTANDGFVRL;HT(0.001)GPNS(0.999)PDTANDGFVRL;HTGPNS(1)PDTANDGFVRL;HTGPNS(1)PDTANDGFVRL;HT(0.004)GPNS(0.996)PDTANDGFVRL;HTGPNS(0.998)PDT(0.001)ANDGFVRL;HTGPNS(1)PDTANDGFVRL 146.68 8.67E-09 530960400 17722.35 16445.8 24203.8 19623.59 16205.83 15405.92 10544.41 12271.88 13832.13 13001.8 TRUE FALSE 17970.51758 18241.40806 18093.25134 18365.02077 18413.33841 18137.9436 12545.15675 11229.3072 15160.76789 10352.02602 1.735942079 1.76210995 1.747798093 1.77405087 1.778718327 1.752115341 1.211855218 1.084744877 1.46452181 1 13.33762553 -7.76341839 6.997882931 1.195225296 1.760804905 0.861917748 0.111423846 0.044582902 11.57923222 0.042218941 0.030275914 1.72E-08 7.76341839 0.56557961 HTGPNSPDTANDGFVR ddPTM_K562_Paclitaxel_30min_R1 2 HTGPNSPDTANDGFVR 16 0 P31943;G8JLB6;E9PCY7;P55795;D6RFM3;D6RJ04;D6RDU3;D6RIU0;D6RIT2;E5RGV0;D6R9T0;D6RBM0;D6RAM1;D6RIH9;H0YAQ2;E5RGH4;E7EQJ0 P31943;E7EQJ0 HNRNPH1;HNRNPH2 "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2" 0 ; 113.65 0.0017187 29923000 2566.9 2166.49 2745.8 2552.66 2249.62 2331.16 2263.54 2604.37 2024.88 2805.8 FALSE TRUE 2602.84452 2403.034705 2052.58883 2388.943813 2556.05633 2744.558495 2693.034899 2383.112513 2219.378771 2233.97642 1.165117275 1.075675949 0.918805056 1.06936841 1.144173371 1.228553028 1.205489402 1.066758132 0.993465621 1 11.12539824 -4.208577003 16.65286758 1.091973391 47.88424772 0 0.094433737 0 0 0.023492889 0 6.19E-05 4.208577003 46.79227432 HTKELS(ph)PT(ph)S(ph)DT(ph)NLVR ddPTM_K562_Paclitaxel_30min_R1 2 HTKELSPTSDTNLVR 15 1 Q8WXX0 Q8WXX0 DNAH7 "Dynein heavy chain 7, axonemal" 4 HT(0.04)KELS(0.962)PT(0.999)S(0.999)DT(1)NLVR;HT(0.025)KELS(0.978)PT(0.998)S(0.998)DT(1)NLVR 83.292 0.0093895 30504000 2266.75 2282.64 2438.9 2189.17 2119.26 2425.47 2211.74 2654.9 2233.88 2265.62 TRUE FALSE 2298.491494 2531.866355 1823.169531 2048.766435 2407.939091 2855.593049 2631.406119 2429.349674 2448.454155 1803.8854 1.27418931 1.403562751 1.01069033 1.135751991 1.334862564 1.583023538 1.458743509 1.346731712 1.357322452 1 10.81689197 -6.925792596 6.4679823 1.386301699 1.207745059 0.125865195 0.168070694 0.354004106 24.4394499 0.052540201 0.059671961 1.19E-07 6.925792596 -0.17855664 HTQLEQMFR ddPTM_K562_Paclitaxel_30min_R1 1 HTQLEQMFR 9 0 Q9Y3A5;A0A087X020 Q9Y3A5 SBDS Ribosome maturation protein SBDS 0 113.71 0.0051454 5635300 903.47 807.81 929.11 1033.6 891.66 949.37 948.59 845.89 998.23 1143.3 FALSE TRUE 916.1213674 896.0094276 694.5446894 967.3095222 1013.119188 1117.72744 1128.580001 774.0263646 1094.114452 910.2948324 1.006400712 0.984306837 0.76298872 1.062633213 1.1129572 1.227874091 1.239796119 0.850302932 1.201934157 1 9.830190081 -6.500871645 21.92168363 1.108734485 0.922584657 0.312927081 0.124495416 194.4001288 193644.5168 0.035623643 0.052155805 3.16E-07 6.500871645 -0.186149828 HTTFEQPVFSVS(ph)KQSPPISTSK ddPTM_K562_Paclitaxel_30min_R1 1 HTTFEQPVFSVSKQSPPISTSK 22 1 P33981-2;P33981 P33981-2 TTK Dual specificity protein kinase TTK 1 HTTFEQPVFS(0.117)VS(0.676)KQS(0.195)PPIS(0.005)T(0.003)S(0.004)K 67.396 0.0049435 28173000 3838.3 3111.4 8069.4 4404.1 3424.5 2602.3 2684.1 3959.2 3428.7 5993.9 TRUE FALSE 3892.048042 3451.113174 6032.180169 4121.640738 3890.974877 3063.781367 3193.393963 3622.841247 3758.041955 4772.33989 0.815542927 0.723149074 1.263987961 0.863651968 0.815318055 0.641987251 0.66914638 0.759133115 0.787463182 1 12.22048108 -6.781592599 3.384593503 0.750081455 0.931512375 0.149586919 0.159224408 0.388256538 9.282776617 0.051334046 0.062772465 1.65E-07 6.781592599 0.181430919 HTTFEQPVFSVSKQS(ph)PPISTSK ddPTM_K562_Paclitaxel_30min_R1 1 HTTFEQPVFSVSKQSPPISTSK 22 1 P33981-2;P33981 P33981-2 TTK Dual specificity protein kinase TTK 1 HTTFEQPVFS(0.002)VS(0.073)KQS(0.923)PPIS(0.002)T(0.001)SK 87.356 0.00040216 28187000 3284 2677.9 6920.2 3505.9 2232.2 2218.7 1997.8 3523.1 3014 5379.1 TRUE FALSE 3329.986132 2970.282178 5173.109922 3281.047266 2536.263431 2612.155293 2376.872121 3223.790664 3303.508167 4282.836467 0.777518861 0.693531542 1.207870056 0.766092119 0.592192453 0.609912452 0.554976156 0.752723269 0.771336518 1 12.06435088 -6.514723193 24.93036395 0.687241754 0.892021254 0.170227476 0.171451243 557.1578262 1703154.064 0.049646944 0.067288499 3.06E-07 6.514723193 0.2047795 HTVLYIS(ph)PPPEDLLDNSR ddPTM_K562_Paclitaxel_30min_R1 2 HTVLYISPPPEDLLDNSR 18 0 O94916-2;O94916;O94916-4;O94916-5 O94916-2 NFAT5 Nuclear factor of activated T-cells 5 1 HTVLYIS(1)PPPEDLLDNSR;HTVLY(0.003)IS(0.997)PPPEDLLDNSR 99.923 0.00079292 35860000 8470.3 7193.4 10307.1 9668.8 7811.3 7726.5 6375.4 8410.5 6805.8 8535.9 TRUE FALSE 8588.910333 7978.799739 7704.945128 9048.686444 8875.331306 9096.68629 7585.098868 7695.975528 7459.527499 6796.278895 1.263766609 1.173995338 1.133700551 1.331417763 1.305910402 1.338480429 1.116066451 1.13238077 1.097589963 1 12.73052934 -8.349601271 1.345536977 1.039334761 1.250135999 0.576912449 0.070588022 0.372690822 1.184195171 0.066872863 0.024326701 4.47E-09 8.349601271 0.210801239 HVDSLSQRS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 HVDSLSQRSPK 11 1 K7ENL0;K7EJV0;K7EPY1;Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8 K7ENL0 9-Sep Septin-9 1 HVDS(0.002)LS(0.035)QRS(0.963)PK;HVDS(0.001)LS(0.009)QRS(0.99)PK 89.46 0.01264 206548000 7338.5 6333.3 11857.5 7831.5 5194.5 5593.1 3906 6868.9 7095.6 7973.9 TRUE FALSE 7441.261641 7024.791112 8863.927473 7329.222642 5902.078844 6584.957754 4647.143109 6285.344071 7777.164084 6348.814803 1.172070988 1.106472835 1.396154676 1.154423758 0.929634747 1.037194809 0.731970179 0.990002743 1.224978886 1 12.63227158 -6.640601927 4.94158356 0.975744875 1.222094471 0.407215045 0.132335284 0.210978877 8.231561233 0.040831419 0.053048637 2.29E-07 6.640601927 0.246349597 HVEEFSPR ddPTM_K562_Paclitaxel_30min_R1 2 HVEEFSPR 8 0 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 0 ; 127.46 0.0028205 15737900 3002.9 2858.8 3876.1 3505.9 2700.6 2137.84 2873.5 3301.6 2593.8 3481.7 FALSE TRUE 3044.949865 3170.933452 2897.530616 3281.047266 3068.467442 2516.955907 3418.731624 3021.108472 2842.946079 2772.127629 1.098416189 1.143862721 1.04523709 1.18358449 1.106899772 0.907950948 1.233251885 1.089815794 1.025546605 1 11.43677797 -7.023985308 24.99832193 1.061534125 1.118305374 0.124555154 0.083429778 1926.174453 2007521.713 0.027309377 0.027463391 9.46E-08 7.023985308 0.056771249 HVEELLR ddPTM_K562_Paclitaxel_30min_R1 1 HVEELLR 7 0 K7EK35;P42229;P42229-2 K7EK35 STAT5A Signal transducer and activator of transcription;Signal transducer and activator of transcription 5A 0 130.04 0.00032779 5012600 438.28 300 537.08 564.34 293.45 421.03 470.42 447.22 625.07 418.26 FALSE TRUE 444.4172722 332.7550145 401.4875115 528.1457583 333.4228581 495.6937589 559.6797392 409.2258695 685.1107664 333.0183824 1.334512735 0.999209149 1.20560165 1.585935751 1.001214575 1.488487679 1.680627163 1.22883868 2.057276122 1 8.379458005 -7.422901911 9.153060035 1.521165999 1.232041041 0.159052225 0.302301822 0.638208014 53.96927981 0.100659323 0.088669729 3.78E-08 7.422901911 -0.289124958 HVEVSQAPLPPAPAYLS(ph)SPLALPSQR ddPTM_K562_Paclitaxel_30min_R1 2 HVEVSQAPLPPAPAYLSSPLALPSQR 26 0 A0A087X0G7;A0A087WUW6;A0A087X1B1;Q9Y6K9-3;Q9Y6K9;Q9Y6K9-2 A0A087X0G7 IKBKG NF-kappa-B essential modulator 1 HVEVSQAPLPPAPAY(0.262)LS(0.315)S(0.315)PLALPS(0.107)QR;HVEVSQAPLPPAPAY(0.002)LS(0.498)S(0.498)PLALPS(0.002)QR 152.03 4.60E-26 48848000 1635.69 1476.33 1669.2 1732.18 1342.38 1180.27 1494.75 1909.84 1294.36 1819.56 TRUE FALSE 1658.594707 1637.520702 1247.789816 1621.085728 1525.234883 1389.574313 1778.371009 1747.587171 1418.689061 1448.732673 1.144859046 1.130312536 0.86129749 1.118968156 1.052806298 0.959165441 1.227535654 1.206286849 0.979262142 1 10.50057569 -7.750995875 24.99986466 1.12046175 1.043891449 0.05702146 0.108248447 511.9921956 1225619.12 0.04178194 0.03200688 1.77E-08 7.750995875 -0.076570301 HVGDLGNVTADKDGVADVS(ph)IEDSVISLSGDHCIIGR ddPTM_K562_Paclitaxel_30min_R1 4 HVGDLGNVTADKDGVADVSIEDSVISLSGDHCIIGR 36 1 H7BYH4;P00441 H7BYH4 SOD1 Superoxide dismutase [Cu-Zn] 1 HVGDLGNVTADKDGVADVS(0.907)IEDS(0.093)VISLSGDHCIIGR;HVGDLGNVTADKDGVADVS(0.998)IEDS(0.002)VISLSGDHCIIGR;HVGDLGNVTADKDGVADVS(0.994)IEDS(0.006)VISLSGDHCIIGR;HVGDLGNVTADKDGVADVS(0.631)IEDS(0.368)VIS(0.001)LSGDHCIIGR 119.35 5.74E-24 210446000 4657.31 3961.36 7888.5 5017.33 3700.69 3973.87 3529.18 4852.18 4463.87 6449.8 TRUE FALSE 4722.526709 4393.874681 5896.950611 4695.540911 4204.786631 4678.580049 4198.823481 4439.957023 4892.644659 5135.32722 0.919615539 0.855617275 1.148310586 0.914360606 0.818796242 0.911057825 0.817635041 0.864590869 0.952742532 1 12.32624049 -6.511763263 24.87508815 0.882768543 0.97407655 0.139013484 0.086868414 857.7841861 1919617.15 0.024810905 0.034403185 3.08E-07 6.511763263 0.091308007 HVINFDLPSDIEEYVHR ddPTM_K562_Paclitaxel_30min_R1 2 HVINFDLPSDIEEYVHR 17 0 A0A2R8Y4A4;A0A2R8YFS5;A0A2R8YDT5;A0A2R8YFR4;A0A2R8YCW1;A0A2R8Y5G6;A0A0J9YVQ7;O00571;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;A0A0D9SG12;A0A0D9SFB3;F6S8Q4;A0A2R8Y7T2;A0A0D9SF53;O00571-2;O15523-2;O15523;A0A087WVZ1 A0A2R8Y4A4 DDX3X;DDX3Y ATP-dependent RNA helicase DDX3X;ATP-dependent RNA helicase DDX3Y 0 ; 187.08 7.58E-11 23700000 8609.7 9463.8 9715.9 8775.5 7264.9 7195.1 9362.1 11737.3 8199.6 14013.2 FALSE TRUE 8730.262363 10497.08969 7263.00088 8212.678708 8254.502376 8471.049961 11138.5096 10740.1431 8987.208217 11157.30215 0.782470731 0.940826873 0.650963896 0.736081052 0.739829599 0.759238197 0.998315673 0.962611119 0.80550012 1 13.4457006 -7.750690329 24.96829117 0.938490987 0.767996901 0.502801719 0.084436882 183.8951505 427159.0404 0.033395062 0.025601305 1.78E-08 7.750690329 -0.170494086 HVS(ph)FQDEDEIVR ddPTM_K562_Paclitaxel_30min_R1 1 HVSFQDEDEIVR 12 0 Q7Z699 Q7Z699 SPRED1 "Sprouty-related, EVH1 domain-containing protein 1" 1 HVS(1)FQDEDEIVR 111.64 0.0039452 5627400 1112.7 1129.5 1474.3 992.49 953.58 1242.6 1228 1541.7 820.48 1304.2 TRUE FALSE 1128.281233 1252.82263 1102.094731 928.8361336 1083.47374 1462.957663 1461.006589 1410.722962 899.29077 1038.403324 1.086553949 1.206489425 1.061335904 0.894484939 1.043403575 1.408853024 1.406974107 1.358550121 0.866032253 1 10.02015119 -7.220487212 24.44719346 1.242922113 1.057728466 0.135376326 0.178521848 670.2684162 400129.7048 0.06054003 0.060539242 6.02E-08 7.220487212 -0.185193647 HVS(ph)PVTPPR ddPTM_K562_Paclitaxel_30min_R1 1 HVSPVTPPR 9 0 Q13443 Q13443 ADAM9 Disintegrin and metalloproteinase domain-containing protein 9 1 HVS(0.999)PVT(0.001)PPR 81.525 0.02371 5278300 1196.6 1269 1348 1170.8 922.11 936.24 1067.1 1111 877.69 1264.4 TRUE FALSE 1213.356092 1407.553711 1007.680728 1095.710128 1047.716993 1102.269019 1269.576654 1016.613615 961.9960461 1006.714586 1.205263248 1.398165608 1.000959698 1.08840196 1.04072893 1.094917104 1.261108831 1.009833005 0.955579724 1 9.975439007 -5.766089592 24.99999785 1.066056332 1.301714445 0.536277529 0.090880208 82.46469766 443348.1912 0.024114863 0.052998101 1.71E-06 5.766089592 0.235658113 HVSGITLLS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 HVSGITLLSPK 11 0 A0A3B3IRJ5;Q9P2B7-2;Q9P2B7 A0A3B3IRJ5 CFAP97 Cilia- and flagella-associated protein 97 1 HVSGITLLS(1)PK 80.746 0.025556 7820000 5356.8 4334.5 8152.4 5541 4361.7 4140.8 3420.3 5017 4930.3 6046 TRUE FALSE 5431.811727 4807.755368 6094.225792 5185.625061 4955.837384 4875.11274 4069.28407 4590.774535 5403.877344 4813.821881 1.128378212 0.998739772 1.265984896 1.077236588 1.029501611 1.012732266 0.845333328 0.953665227 1.122575259 1 12.23296705 -6.875051694 2.267078427 0.976727294 1.122679323 0.333098075 0.088134207 0.352085066 3.695102373 0.031080152 0.036867568 1.33E-07 6.875051694 0.14595203 HVSS(ph)TSSSFLEV ddPTM_K562_Paclitaxel_30min_R1 1 HVSSTSSSFLEV 12 0 B4E2Q0;P98194-4;P98194 B4E2Q0 ATP2C1 Calcium-transporting ATPase;Calcium-transporting ATPase type 2C member 1 1 HVS(0.134)S(0.73)T(0.134)S(0.001)SSFLEV 95.483 0.012999 3128100 914.36 1096.6 1188.4 1168.7 876.5 826.66 773 985.63 854.01 1098.3 TRUE FALSE 927.163861 1216.330496 888.3737221 1093.744813 995.8941393 973.2565441 919.6727147 901.8945794 936.0414763 874.4658571 1.060263078 1.390941095 1.015904412 1.250757596 1.138859947 1.112972606 1.051696538 1.031366259 1.070415121 1 9.772258246 -7.482817391 1.415762832 1.034772304 1.184603499 0.295926367 0.097170167 0.503854341 2.046052459 0.046869863 0.035289936 3.29E-08 7.482817391 0.149831195 HVTLPS(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 1 HVTLPSSPR 9 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 HVTLPS(0.602)S(0.398)PR 96.334 0.0094556 617920000 3440.5 3099.9 4348 4053.7 3526.8 2771.8 3067.1 3595.3 2996.3 3735.5 TRUE FALSE 3488.677615 3438.357565 3250.293625 3793.713826 4007.209869 3263.339812 3649.066214 3289.856824 3284.108003 2974.20305 1.172978965 1.15606013 1.092828422 1.275539619 1.347322225 1.09721487 1.226905545 1.10613054 1.104197645 1 11.53828743 -8.850395974 1.116773963 1.003957344 1.197228465 0.407305501 0.074293441 0.497901902 1.35402653 0.073812879 0.024216412 1.41E-09 8.850395974 0.193271121 HVTLPSS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 HVTLPSSPR 9 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 HVTLPS(0.221)S(0.779)PR 80.17 0.025153 325900000 1150.1 1179.1 1466.8 1401.7 1252.8 1200.2 1207.3 1567.3 1260.1 1487.8 TRUE FALSE 1166.204948 1307.838125 1096.488199 1311.801236 1423.45257 1413.038618 1436.378872 1434.148082 1381.138235 1184.585543 0.984483522 1.104047009 0.925630238 1.107392576 1.201646076 1.192854857 1.212558165 1.210674983 1.165925283 1 10.21016667 -6.506501797 5.541313915 1.17696069 1.013992959 0.489130533 0.07180719 0.131677237 13.26342326 0.019579946 0.027640758 3.12E-07 6.506501797 -0.162967731 HVVRPPPRS(ph)PEPDTLPLAAGSDHPLPR ddPTM_K562_Paclitaxel_30min_R1 2 HVVRPPPRSPEPDTLPLAAGSDHPLPR 27 2 H7C112;H3BPZ0;Q6PCT2-2;Q6PCT2-3;Q6PCT2;H3BVB1;H3BME1 H7C112 FBXL19 F-box/LRR-repeat protein 19 1 HVVRPPPRS(0.899)PEPDT(0.1)LPLAAGS(0.001)DHPLPR;HVVRPPPRS(0.997)PEPDT(0.003)LPLAAGSDHPLPR 78.707 2.59E-05 237793000 1903.2 2000.15 2489.3 2097.76 1919.14 1616.58 1556.49 2180.96 1677.37 2442.8 TRUE FALSE 1929.850672 2218.533141 1860.845428 1963.219063 2180.559359 1903.257765 1851.825852 1995.673835 1838.488883 1944.956019 0.992233579 1.140659799 0.956754502 1.009389952 1.121135562 0.978560824 0.952117083 1.026076587 0.945259875 1 10.92552182 HVVRPPPRSPEPDT(ph)LPLAAGSDHPLPR ddPTM_K562_Paclitaxel_30min_R1 1 HVVRPPPRSPEPDTLPLAAGSDHPLPR 27 2 H7C112;H3BPZ0;Q6PCT2-2;Q6PCT2-3;Q6PCT2;H3BVB1;H3BME1 H7C112 FBXL19 F-box/LRR-repeat protein 19 1 HVVRPPPRS(0.276)PEPDT(0.723)LPLAAGS(0.001)DHPLPR 43.696 0.021637 9090900 274.59 224.95 355.52 285.06 315.58 248.71 343.56 243.56 273.4 330.9 TRUE FALSE 278.4351072 249.5108017 265.764579 266.7775275 358.5673388 292.8152264 408.7487165 222.8680577 299.6612916 263.4623984 1.056830534 0.947045208 1.008738175 1.012582931 1.360981078 1.111411831 1.551449919 0.845919794 1.13739681 1 8.041453263 -6.568468538 24.90622128 1.177446761 1.000516997 0.159600005 0.180837865 210.977782 115258.3273 0.052770277 0.068126169 2.70E-07 6.568468538 -0.176929764 HWVAPGGPYSAETPGVPS(ph)PIAALK ddPTM_K562_Paclitaxel_30min_R1 2 HWVAPGGPYSAETPGVPSPIAALK 24 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 HWVAPGGPYSAETPGVPS(1)PIAALK;HWVAPGGPYSAET(0.212)PGVPS(0.788)PIAALK 130.69 9.33E-14 36178000 4554 4492.1 8316.6 5027 4227.7 3658.2 3247.5 5409.2 4413.7 6464.8 TRUE FALSE 4617.77005 4982.562669 6216.971472 4704.59072 4803.584316 4306.930406 3863.696172 4949.654697 4837.655606 5147.270211 0.897129908 0.968000992 1.207819138 0.913997231 0.933229482 0.836740686 0.750630142 0.961607705 0.939848776 1 12.3295918 -6.49301489 24.8341052 0.893744307 1.025722305 0.233298531 0.098152179 880.3342578 732065.9034 0.028595739 0.042341213 3.21E-07 6.49301489 0.131977998 HYAHTDCPGHADYVK ddPTM_K562_Paclitaxel_30min_R1 1 HYAHTDCPGHADYVK 15 0 P49411 P49411 TUFM "Elongation factor Tu, mitochondrial" 0 74.537 0.01574 3480600 688.99 626.78 1131.6 700.33 703.55 605.49 598.36 762.67 568.84 824.48 FALSE TRUE 698.6379857 695.21396 845.9135845 655.4139684 799.3854212 712.86515 711.8956864 697.8764231 623.4796236 656.4505234 1.06426602 1.059050051 1.288617427 0.99842097 1.217739026 1.085938886 1.084462059 1.063105898 0.949773976 1 9.358542469 -8.416711422 1.597028799 0.975946314 1.121785448 0.317886547 0.079869996 0.46836984 2.113237661 0.065647262 0.022808002 3.83E-09 8.416711422 0.145839134 HYDDFFER ddPTM_K562_Paclitaxel_30min_R1 1 HYDDFFER 8 0 Q9NRL2-2;Q9NRL2 Q9NRL2-2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 0 180.45 7.84E-07 6634200 400.25 488.76 393.91 450.43 371.71 319.96 435.83 503.35 485.84 542.52 FALSE TRUE 405.8547349 542.1244697 294.4625487 421.5414359 422.3431951 376.7004135 518.5264673 460.5872757 532.5071028 431.9541262 0.939578326 1.255051027 0.681698659 0.97589399 0.977750112 0.872084304 1.20042022 1.066287478 1.232786239 1 8.754734295 -7.763868263 24.99487758 1.130397446 0.954389228 0.258327602 0.144658082 91.64424104 943060.8863 0.057509633 0.040846285 1.72E-08 7.763868263 -0.176008219 HYEDGYPGGSDNYGS(ph)LSR ddPTM_K562_Paclitaxel_30min_R1 1 HYEDGYPGGSDNYGSLSR 18 0 O60716;O60716-21;O60716-2;O60716-10;O60716-9;O60716-17;O60716-5;O60716-3;A0A669KB05;O60716-11;C9JZR2;O60716-18;O60716-19;O60716-13;O60716-23;O60716-14;O60716-12;O60716-7;O60716-4;O60716-22;O60716-6;O60716-8;A0A669KB62;O60716-16;O60716-15;O60716-24;O60716-20 O60716 CTNND1 Catenin delta-1 1 HYEDGYPGGSDNYGS(0.97)LS(0.03)R 97.825 0.00082726 19499000 1865.8 1546.6 2138.2 1869.6 1267.2 1461.3 1697.5 2356.8 2382.6 2536.9 TRUE FALSE 1891.926956 1715.463018 1598.384965 1749.692224 1439.814094 1720.441037 2019.591763 2156.575129 2611.459376 2019.878387 0.936653894 0.849290249 0.791327327 0.86623642 0.712822169 0.851754763 0.999858098 1.067675729 1.292879508 1 10.98005272 -8.015353822 2.064698234 1.141752512 0.827855142 0.689470679 0.086882985 0.179124612 1.50483031 0.050115592 0.025990891 9.65E-09 8.015353822 -0.31389737 HYEEIPEY(ph)ENLPFIMAIR ddPTM_K562_Paclitaxel_30min_R1 1 HYEEIPEYENLPFIMAIR 18 0 F8VY01;Q6ZV73-2;Q6ZV73 F8VY01 FGD6 "FYVE, RhoGEF and PH domain-containing protein 6" 1 HYEEIPEY(1)ENLPFIMAIR 107.98 0.0020272 2470400 611.67 627.44 676.04 755.88 353.19 415.59 696.62 678.91 700.62 618.44 TRUE FALSE 620.2352672 695.9460211 505.3653408 707.40124 401.3004576 489.2890513 828.8000084 621.2323579 767.9176815 492.4015885 1.259612645 1.413370788 1.026327601 1.436634764 0.814986115 0.993678864 1.68317899 1.261637599 1.559535345 1 8.943691606 -7.742372202 24.99730624 1.39789132 1.160234208 0.158325168 0.244871417 421.3537707 552400.1227 0.092150697 0.071262696 1.81E-08 7.742372202 -0.237657112 HYGITS(ph)PISLAAPK ddPTM_K562_Paclitaxel_30min_R1 1 HYGITSPISLAAPK 14 0 G3V457;G3V3I9;A0A0C4DGK1;G3XAH6;P51003-2;P51003 G3V457 PAPOLA Poly(A) polymerase alpha 1 HYGIT(0.021)S(0.976)PIS(0.003)LAAPK 183.06 2.45E-06 23695000 3172.1 2680.5 4794.1 3063 2483.5 2227.5 2245.1 3710.1 1662.6 3810.4 TRUE FALSE 3216.519187 2973.166055 3583.770162 2866.552889 2821.794746 2622.515849 2671.096005 3394.903847 1822.300159 3033.838388 1.060214413 0.980001462 1.181266008 0.944860115 0.93010714 0.864421737 0.880434507 1.119012753 0.600658283 1 11.56692852 -6.461779182 7.552089099 0.905392348 1.064958399 0.261845515 0.130820787 0.408270909 45.00863047 0.034986469 0.051729878 3.45E-07 6.461779182 0.159566051 HYNGEAYEDDEHHPR ddPTM_K562_Paclitaxel_30min_R1 2 HYNGEAYEDDEHHPR 15 0 P31689 P31689 DNAJA1 DnaJ homolog subfamily A member 1 0 ; 222.55 3.18E-26 18932400 3056.8 2887.5 3127 2414.8 2211.15 1897.84 1620.99 2376.5 1479.9 2255.8 FALSE TRUE 3099.604631 3202.767015 2337.550176 2259.925536 2512.346065 2234.395277 1928.56439 2174.601491 1622.051007 1796.066722 1.725773655 1.783211601 1.301482928 1.258263687 1.398804418 1.244049149 1.073771017 1.210757632 0.90311289 1 10.81062523 -2 0.241666457 0.959053272 6.213846696 0.813302246 0.117147034 20.24758899 0.271263197 0.15918646 42.7827953 0.01 2 5.254793424 HYQGEEKS(ph)D ddPTM_K562_Paclitaxel_30min_R1 2 HYQGEEKSD 9 1 P13984 P13984 GTF2F2 General transcription factor IIF subunit 2 1 HYQGEEKS(1)D;HYQGEEKS(1)D 89.189 0.012408 34739000 8840.7 8824.4 16819.8 10588.5 8056.3 6459.1 6137.2 9404 8023.9 11002.9 TRUE FALSE 8964.497076 9787.877834 12573.43347 9909.401002 9153.704454 7604.530695 7301.701662 8605.071502 8794.631447 8760.50294 1.023285665 1.117273506 1.435241053 1.131145217 1.044883441 0.868047274 0.833479734 0.982257704 1.003895725 1 13.09679798 -6.878619247 2.828307697 0.931666347 1.194326083 0.506763756 0.110843953 0.220143694 3.558135108 0.038944538 0.045545641 1.32E-07 6.878619247 0.262659736 HYQINQQWER ddPTM_K562_Paclitaxel_30min_R1 2 HYQINQQWER 10 0 P02751;P02751-8;P02751-13;P02751-7;P02751-1;P02751-11;P02751-3;P02751-17;P02751-14;P02751-9;P02751-5;P02751-6;P02751-10;P02751-12;P02751-2;P02751-16;P02751-4 P02751 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 0 ; 129.89 0.0018583 15020500 2505.7 2654 2653.44 2808.64 2720.9 2790.06 3112.2 4173.2 2925.68 3941.8 FALSE TRUE 2540.787531 2943.772695 1983.546255 2628.506401 3091.532645 3284.837967 3702.723703 3818.660612 3206.704636 3138.458996 0.80956531 0.93796755 0.632012799 0.837514973 0.985047964 1.046640396 1.179790371 1.216731082 1.021744952 1 11.61584065 -6.982656099 1.992648384 1.115825234 0.798013765 0.678418984 0.093698924 0.187477883 1.503566154 0.034842839 0.038703178 1.04E-07 6.982656099 -0.317811469 HYYEVSCHDQGLCR ddPTM_K562_Paclitaxel_30min_R1 2 HYYEVSCHDQGLCR 14 0 F1T0B3;A0A087X2G1;Q92499-3;Q92499-2;Q92499 F1T0B3 DDX1 ATP-dependent RNA helicase DDX1 0 ; 155.86 2.57E-05 29097000 2299.6 2028.17 2254.9 1819.91 1617.79 1867.32 2111.9 2581.3 1605.86 3193.1 FALSE TRUE 2331.801495 2249.612459 1685.622607 1703.189118 1838.160387 2198.462984 2512.622 2362.002453 1760.110028 2542.344467 0.917185505 0.884857457 0.663018969 0.66992854 0.723017833 0.864738438 0.988309032 0.929064682 0.692317682 1 11.3119438 -7.415467424 5.344295702 0.900305088 0.766946202 0.2438119 0.109787303 0.358529335 14.82290711 0.042019904 0.036680988 3.84E-08 7.415467424 -0.133358886 IAASS(ph)SFR ddPTM_K562_Paclitaxel_30min_R1 1 IAASSSFR 8 0 Q99961-3;Q99961-2;Q99961 Q99961-3 SH3GL1 Endophilin-A2 1 IAAS(0.123)S(0.753)S(0.123)FR 96.034 0.015209 103570000 2445 2582.3 2972 2540.5 2290.7 2444 2971.6 3481.8 3255.7 4177.5 TRUE FALSE 2479.237543 2864.244247 2221.681843 2377.563701 2602.732122 2877.409085 3535.445587 3185.999357 3568.424532 3326.123207 0.745383556 0.861135944 0.667949353 0.714815283 0.78251224 0.865093956 1.06293284 0.95787172 1.07284797 1 11.69962589 -7.517338103 2.537593426 1.02079248 0.752334063 0.834411753 0.056251643 0.113637977 1.471560451 0.023692866 0.018625455 3.04E-08 7.517338103 -0.268458417 IAASSS(ph)FR ddPTM_K562_Paclitaxel_30min_R1 3 IAASSSFR 8 0 Q99961-3;Q99961-2;Q99961 Q99961-3 SH3GL1 Endophilin-A2 1 IAAS(0.039)S(0.231)S(0.73)FR;IAAS(0.016)S(0.09)S(0.893)FR;IAAS(0.032)S(0.204)S(0.764)FR 112.41 0.0075329 1091560000 11636.7 10996.3 12887 12913.3 10939.1 11913.5 13342.8 17482.8 14826.1 18592.9 TRUE FALSE 11799.6497 12196.91322 9633.517466 12085.09874 12429.19062 14026.19195 15874.52665 15997.52702 16250.21315 14803.65677 0.797076687 0.823912187 0.650752555 0.81635902 0.839602729 0.947481569 1.072338199 1.080646982 1.097716152 1 13.85366597 -7.34681687 1.549270657 1.073909945 0.766353116 0.867857148 0.05156858 0.129334559 0.619551882 0.023871385 0.02027242 4.50E-08 7.34681687 -0.307556829 IACDEEFS(ph)DSEDEGEGGRR ddPTM_K562_Paclitaxel_30min_R1 2 IACDEEFSDSEDEGEGGRR 19 1 Q92769-3;Q92769 Q92769-3 HDAC2 Histone deacetylase 2 1 IACDEEFS(0.934)DS(0.066)EDEGEGGRR;IACDEEFS(0.683)DS(0.317)EDEGEGGRR 87.652 0.0016268 146030000 2074.93 2529.8 3495.8 2737.3 2620 3540.2 2073.8 2772.9 2022.8 2536.8 TRUE FALSE 2103.985422 2806.012119 2613.242054 2561.74183 2976.888357 4168.004763 2467.292724 2537.324837 2217.098978 2019.798768 1.041680714 1.389253308 1.293813075 1.268315374 1.473853933 2.063574268 1.221553733 1.25622655 1.097683103 1 10.97999585 -8.570917998 1.91755605 1.028698409 1.412290789 0.234215517 0.251638154 0.544085696 3.618520022 0.237433381 0.075166606 2.69E-09 8.570917998 0.38359238 IACEEEFS(ph)DS(ph)EEEGEGGR ddPTM_K562_Paclitaxel_30min_R1 1 IACEEEFSDSEEEGEGGR 18 0 Q13547 Q13547 HDAC1 Histone deacetylase 1 2 IACEEEFS(1)DS(1)EEEGEGGR 150.76 8.19E-09 15022000 1705.1 1538.5 2623.7 1892.5 1566.2 1823.8 1352.1 1913.6 1516.6 1881.2 TRUE FALSE 1728.976661 1706.478633 1961.314485 1771.123521 1779.542956 2147.225323 1608.653917 1751.027736 1662.276206 1497.810407 1.154336124 1.139315513 1.309454438 1.182475106 1.188096269 1.43357618 1.074003698 1.169058331 1.10980415 1 10.5486393 -8.862656036 1.067625931 1.00547975 1.22128137 0.351008496 0.092545261 0.554835541 1.390661762 0.087732884 0.029206857 1.37E-09 8.862656036 0.21580162 IACKS(ph)PPPESMDTPTSTR ddPTM_K562_Paclitaxel_30min_R1 2 IACKSPPPESMDTPTSTR 18 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 IACKS(1)PPPESMDTPTSTR;IACKS(1)PPPESMDTPTSTR 73.252 0.013085 161375000 4270.5 3438 6848.6 3885 3271.4 3306 2384.49 3632.2 3646.2 4396.9 TRUE FALSE 4330.300176 3813.372467 5119.586228 3635.833489 3717.020065 3892.272681 2836.93453 3323.621939 3996.433802 3500.809366 1.236942582 1.089283096 1.462400746 1.038569402 1.061760203 1.111820803 0.810365328 0.949386725 1.141574243 1 11.77347279 -6.484933592 22.28913718 1.0089374 1.246344768 0.467018413 0.120607528 142.030939 83428.81024 0.034319902 0.050878109 3.27E-07 6.484933592 0.237407368 IACKS(ph)PPPESVDTPTSTK ddPTM_K562_Paclitaxel_30min_R1 4 IACKSPPPESVDTPTSTK 18 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 IACKS(1)PPPESVDTPTSTK;IACKS(0.998)PPPES(0.001)VDT(0.001)PTSTK;IACKS(0.999)PPPES(0.001)VDTPTSTK;IACKS(0.989)PPPES(0.001)VDT(0.009)PTSTK 121.91 1.20E-05 182652000 12478.2 9235.1 27014 13277 9516.9 6539.7 7046.7 12594.2 10106.5 17097.4 TRUE FALSE 12652.9333 10243.41945 20193.9816 12425.47265 10813.2629 7699.423973 8383.774539 11524.2441 11077.27448 13612.9405 0.929478337 0.75247662 1.483440084 0.912769188 0.794337043 0.565595947 0.615868007 0.846565377 0.813731206 1 13.73269111 -6.651607108 3.998035913 0.746411562 1.04750927 0.264770271 0.206333798 0.286243482 8.423583553 0.063999535 0.083550595 2.23E-07 6.651607108 0.301097708 IACRS(ph)PQPDPVGTPTIFKPQSK ddPTM_K562_Paclitaxel_30min_R1 2 IACRSPQPDPVGTPTIFKPQSK 22 2 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 IACRS(0.996)PQPDPVGT(0.003)PT(0.001)IFKPQSK;IACRS(1)PQPDPVGTPTIFKPQSK 84.113 0.0004917 80556000 4621.6 4126.4 11214.9 6203.1 4442.5 3847.4 3511.4 5479.4 5489.2 7475.2 TRUE FALSE 4686.316659 4576.934307 8383.559791 5805.26093 5047.643712 4529.68237 4177.669819 5013.890769 6016.462186 5951.750137 0.787384643 0.769006461 1.408587323 0.975387205 0.848094022 0.761067294 0.701922917 0.842422927 1.010872777 1 12.53909825 -6.741431837 5.605388691 0.839388789 1.00144944 0.088865013 0.18605519 0.374785894 35.11477977 0.059400453 0.074137107 1.81E-07 6.741431837 0.16206065 IADPEHDHTGFLTEY(ph)VATR ddPTM_K562_Paclitaxel_30min_R1 2 IADPEHDHTGFLTEYVATR 19 0 B3KR49;E9PJF0;E9PQW4;P27361-2;P27361-3;P27361 B3KR49 MAPK3 Mitogen-activated protein kinase;Mitogen-activated protein kinase 3 1 IADPEHDHTGFLT(0.004)EY(0.996)VATR;IADPEHDHTGFLT(0.117)EY(0.881)VAT(0.002)R 174.35 1.76E-13 23262900 4268.5 3545.9 4519.4 3511.2 3737.9 3066.3 2795.18 4399.1 2033.83 5611 TRUE FALSE 4328.272169 3933.053353 3378.421575 3286.007348 4247.065263 3610.065252 3325.550813 4025.368997 2229.188459 4467.47512 0.9688408 0.880374988 0.756226164 0.735540156 0.950663439 0.808077304 0.744391569 0.901038929 0.498981729 1 12.12524398 -7.516982434 24.03117525 0.777624588 0.850290931 0.055900993 0.138013725 528.7432919 2154990.308 0.049817852 0.039948362 3.04E-08 7.516982434 0.072666342 IAEPVWLT(ph)MMS(ph)GT(ph)LEK ddPTM_K562_Paclitaxel_30min_R1 1 IAEPVWLTMMSGTLEK 16 0 D6RFH5;Q9P278;Q9P278-2 D6RFH5 FNIP2 Folliculin-interacting protein 2 3 IAEPVWLT(1)MMS(1)GT(1)LEK 43.628 0.030728 0 136.72 128.37 60.112 112.2 112.61 0 179.35 136.73 0 0 TRUE FALSE 138.6345018 142.3858707 44.93598214 105.0039942 127.9493885 0 213.3807262 125.1139331 0 0 0 IALEARPLLSQEDS(ph)EEEENELEAINR ddPTM_K562_Paclitaxel_30min_R1 1 IALEARPLLSQEDSEEEENELEAINR 26 1 Q9H1H9-3;Q9H1H9-4;Q9H1H9-2 Q9H1H9-3 KIF13A Kinesin-like protein KIF13A 1 IALEARPLLSQEDS(1)EEEENELEAINR 75.416 0.00016355 0 297.91 68.301 266.96 236.46 224.35 173.47 134.2 179.5 257.7 167.07 TRUE FALSE 302.0816591 75.75833416 199.5626463 221.294514 254.9102683 204.2324689 159.6637494 164.2503546 282.4532364 133.0210423 2.27093138 0.569521429 1.500233669 1.663605322 1.916315373 1.535339562 1.200289418 1.234769716 2.1233726 1 7.05551067 -14.08942736 11.8556707 1.145221118 1.490644719 0 0.496122049 0 0 0 0.108241149 8.14E-15 14.08942736 0.345423601 IALPAPRGS(ph)GTASDDEFENLR ddPTM_K562_Paclitaxel_30min_R1 1 IALPAPRGSGTASDDEFENLR 21 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 IALPAPRGS(0.991)GT(0.003)AS(0.006)DDEFENLR 78.917 0.0018871 19061000 549.7 492.04 462.51 466 379.74 332.68 326.84 450.25 453.9 401.72 TRUE FALSE 557.397496 545.7625912 345.7436302 436.1128457 431.4670171 391.6761269 388.8561838 411.9984521 497.4991231 319.8492435 1.74268818 1.706311965 1.080958099 1.363495005 1.348969947 1.224564806 1.21574833 1.288102006 1.555417539 1 8.321248261 -5.743467257 24.58704152 1.274023148 1.724500705 0.618901719 0.145557471 125.9280172 172274.4096 0.035508647 0.093500188 1.81E-06 5.743467257 0.450477557 IALVS(ph)EADSESRFQR ddPTM_K562_Paclitaxel_30min_R1 1 IALVSEADSESRFQR 15 1 X6RI56;O94886 X6RI56 TMEM63A CSC1-like protein 1 1 IALVS(0.996)EADS(0.002)ES(0.002)RFQR 67.019 0.030435 0 837.01 1078.7 978.02 862.15 544.91 739.92 1060.6 1087.5 739.15 1307.8 TRUE FALSE 848.7307224 1196.476114 731.106755 806.8555578 619.1359674 871.134423 1261.843313 995.110087 810.1486601 1041.269642 0.815092161 1.149055024 0.702130097 0.774876675 0.594597156 0.836607914 1.211831463 0.955669931 0.778039258 1 10.02412799 -7.552035897 24.99608879 0.988623745 0.808225899 0.214524528 0.164195083 353.1609713 302757.7817 0.066137152 0.051230333 2.81E-08 7.552035897 -0.180397846 IAMKQY(ph)T(ph)S(ph)NIK ddPTM_K562_Paclitaxel_30min_R1 1 IAMKQYTSNIK 11 1 K7ELM0;K7EPE4;K7EJ08;Q92503-3;Q92503;Q92503-2 K7ELM0 SEC14L1 SEC14-like protein 1 3 IAMKQY(1)T(1)S(1)NIK 42.599 0.031091 0 813.54 407.67 733.26 630.66 388.56 327.71 315.96 614.13 691.93 672.41 TRUE FALSE 824.93207 452.1807893 548.1394442 590.2122903 441.4884504 385.8247672 375.9117606 561.9558232 758.3929681 535.3724729 1.540856342 0.84460971 1.023846895 1.102433017 0.824637935 0.720666054 0.70214996 1.049653936 1.416570718 1 9.064399152 -5.254832135 24.35740302 0.952409136 1.54085673 0.426756725 0.199764531 546.1623135 2013333.501 0.052861731 0.487372131 5.56E-06 5.254832135 0.588447594 IAQVS(ph)PGPR ddPTM_K562_Paclitaxel_30min_R1 3 IAQVSPGPR 9 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 IAQVS(1)PGPR;IAQVS(1)PGPR;IAQVS(1)PGPR 112.94 0.0049215 355381000 8124.2 7472.4 9813.1 9028.8 7412 6797.1 6870.9 9751 7493.4 9172.6 TRUE FALSE 8237.963865 8288.261902 7335.661538 8449.733179 8421.639886 8002.470249 8174.617406 8922.591686 8213.174551 7303.219085 1.12799079 1.134877895 1.004442213 1.156987498 1.153140798 1.09574561 1.119317018 1.221734085 1.12459649 1 12.83431679 ICDECNYGSYQGR ddPTM_K562_Paclitaxel_30min_R1 1 ICDECNYGSYQGR 13 0 Q7RTV0 Q7RTV0 PHF5A PHD finger-like domain-containing protein 5A 0 142.19 6.03E-22 0 411.25 496.81 678.88 616.75 471.7 541.47 443.06 654.63 597.93 519.86 FALSE TRUE 417.0087688 551.0533959 507.4883477 577.1944155 535.9535259 637.4921019 527.1283221 599.0150954 655.3638481 413.9122466 1.007481108 1.331329045 1.22607715 1.394484991 1.294848196 1.540162455 1.273526759 1.447203122 1.583340076 1 8.693181125 -4.472064024 0.902483115 1.379782991 2.32E-12 0.275460365 0.15931917 9.489195172 2.154392067 0.050193765 18.08316932 3.37E-05 4.472064024 -1.379782991 ICPVPPVSTVTGDENIS(ph)DSEIEQYLR ddPTM_K562_Paclitaxel_30min_R1 2 ICPVPPVSTVTGDENISDSEIEQYLR 26 0 Q9HAW0-2;Q9HAW0 Q9HAW0-2 BRF2 Transcription factor IIIB 50 kDa subunit 1 ICPVPPVSTVT(0.001)GDENIS(0.937)DS(0.062)EIEQYLR;ICPVPPVSTVTGDENIS(0.897)DS(0.103)EIEQYLR 109.44 5.26E-07 22704000 3519.4 3122.6 4436.2 3788.4 2950 2961.8 3225.6 4078 3762.7 3737.1 TRUE FALSE 3568.682458 3463.536028 3316.226444 3545.42898 3351.839944 3487.033644 3837.640761 3731.548446 4124.124147 2975.476969 1.19936484 1.164027168 1.114519278 1.191549798 1.126488284 1.17192426 1.2897565 1.254100934 1.386038 1 11.53890524 -7.665643214 6.365154329 1.253289495 1.158053452 0.105471475 0.094301608 0.350331082 19.53318782 0.034045041 0.026150124 2.16E-08 7.665643214 -0.095236043 ICQDMKEPEDNS(ph)PNTCQVISVIQDHPFK ddPTM_K562_Paclitaxel_30min_R1 2 ICQDMKEPEDNSPNTCQVISVIQDHPFK 28 1 Q9BXL5 Q9BXL5 HEMGN Hemogen 1 ICQDMKEPEDNS(0.959)PNT(0.041)CQVISVIQDHPFK;ICQDMKEPEDNS(0.497)PNT(0.497)CQVIS(0.007)VIQDHPFK 127.3 5.16E-15 120608000 4423.9 3109.6 10411.2 5046.5 3620.7 3107.1 3067.7 5139.9 4577.7 6542.3 TRUE FALSE 4485.848249 3449.116644 7782.763796 4722.840077 4113.900639 3658.100559 3649.780061 4703.233413 5017.408539 5208.975669 0.861176656 0.662148734 1.494106383 0.906673476 0.789771521 0.702268698 0.700671359 0.902909461 0.963223647 1 12.34678398 ICT(ph)VPNS(ph)SS(ph)QLIKK ddPTM_K562_Paclitaxel_30min_R1 1 ICTVPNSSSQLIKK 14 1 J3KTH2;Q92750-2;Q92750 J3KTH2 TAF4B Transcription initiation factor TFIID subunit 4B 3 ICT(0.984)VPNS(0.981)S(0.054)S(0.981)QLIKK 65.563 0.025723 25767000 1616.5 1564.1 2555.1 2042.1 1451.8 1268.6 1386 2025.7 1417.1 2196.4 TRUE FALSE 1639.135987 1734.873727 1910.033404 1911.128846 1649.559739 1493.568398 1648.986265 1853.604141 1553.218787 1748.772474 0.937306603 0.992052284 1.092213785 1.092840192 0.943267214 0.854066735 0.942939284 1.059945858 0.888176598 1 10.77212688 -6.792138911 24.77919306 0.946106892 1.030536052 0.254170475 0.067503977 265.4923226 214291.2399 0.022224826 0.025203661 1.61E-07 6.792138911 0.08442916 ICTLPSPPS(ph)PLASLAPVADSSTR ddPTM_K562_Paclitaxel_30min_R1 2 ICTLPSPPSPLASLAPVADSSTR 23 0 Q9UER7-3;Q9UER7;Q9UER7-2 Q9UER7-3 DAXX Death domain-associated protein 6 1 ICT(0.002)LPS(0.018)PPS(0.978)PLAS(0.002)LAPVADSSTR;ICTLPS(0.011)PPS(0.988)PLAS(0.001)LAPVADSSTR 87.28 0.0003032 19115000 4435.9 4755.8 5034.5 4531.5 4325.1 3371.17 4376.1 5899.4 3029.2 5939 TRUE FALSE 4498.016286 5275.054327 3763.478209 4240.869872 4914.251845 3968.999666 5206.44213 5398.209147 3320.168195 4728.62854 0.951230626 1.115556928 0.795892123 0.896849866 1.03925521 0.839355351 1.101046971 1.141601439 0.702141893 1 12.2072061 -7.762285482 24.99929217 0.997997663 0.943726126 0.023031184 0.138718909 102.0923413 3016282.038 0.055200669 0.039702912 1.73E-08 7.762285482 -0.054271537 IDASKNEEDEGHSNS(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 3 IDASKNEEDEGHSNSSPR 18 1 D6RAF8;Q14103-3;Q14103;D6RD83 D6RAF8 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 IDASKNEEDEGHSNS(0.858)S(0.142)PR;IDASKNEEDEGHS(0.059)NS(0.892)S(0.049)PR;IDASKNEEDEGHS(0.145)NS(0.427)S(0.427)PR 187.5 3.84E-12 288567000 12243.9 9772.9 22447.4 14072.2 10612.8 9004.2 9099.4 14153.8 8332.5 17029.8 TRUE FALSE 12415.35238 10839.93827 16780.27624 13169.67208 12058.44304 10600.96844 10825.96365 12951.34634 9132.873856 13559.11741 0.915646056 0.799457512 1.237564049 0.971277973 0.889323595 0.781833221 0.798426868 0.955176207 0.673559611 1 13.72697565 -6.871947846 3.673128124 0.836438895 0.98652995 0.196308194 0.132379585 0.374379364 9.662062346 0.042562642 0.049383377 1.34E-07 6.871947846 0.150091055 IDASKNEEDEGHSNSSPR ddPTM_K562_Paclitaxel_30min_R1 1 IDASKNEEDEGHSNSSPR 18 1 D6RAF8;Q14103-3;Q14103;D6RD83 D6RAF8 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 0 80.738 0.0097976 6359900 2183.7 1669.6 4434.8 2391.1 1739.1 1791.8 1660.7 2501.1 1531.9 2984.1 FALSE TRUE 2214.278537 1851.892574 3315.179891 2237.745548 1975.994863 2109.550572 1975.809156 2288.615944 1679.04584 2375.938782 0.931959423 0.779436149 1.395313682 0.941836366 0.831669098 0.887880861 0.831590936 0.963247017 0.706687332 1 11.21428195 -6.518316625 24.92728869 0.869065884 1.036392811 0.173743241 0.161646147 324.931887 1775424.522 0.047138157 0.062519057 3.03E-07 6.518316625 0.167326927 IDDRDS(ph)DEEGASDR ddPTM_K562_Paclitaxel_30min_R1 3 IDDRDSDEEGASDR 14 1 Q8TDD1-2;Q8TDD1 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 IDDRDS(1)DEEGASDR;IDDRDS(1)DEEGASDR;IDDRDS(1)DEEGASDR 117.53 0.0012463 119175000 8779.9 7884.1 11777 9885.7 7932.6 7660.3 7830 9303 7897.5 10638.4 TRUE FALSE 8902.845688 8744.9127 8803.750694 9251.675449 9013.15442 9018.746649 9315.701625 8512.652082 8656.090162 8470.28824 1.051067618 1.032422091 1.039368489 1.092250368 1.064090638 1.064750855 1.099809282 1.005001464 1.021935726 1 13.04819535 -8.28643205 24.95444634 1.010101433 1.062467712 0.60088625 0.020306703 599.3663465 598445.3249 0.011871443 0.005706369 5.17E-09 8.28643205 0.052366278 IDFDSVSSIMAS(ph)SQ ddPTM_K562_Paclitaxel_30min_R1 1 IDFDSVSSIMASSQ 14 0 A0A087WVB9;K7ERF1;Q9UBQ5;K7EK53 A0A087WVB9 EIF3K Eukaryotic translation initiation factor 3 subunit K 1 IDFDSVSSIMAS(0.81)S(0.19)Q 91.202 0.013892 2445500 360.42 496.77 565.59 299.32 527.58 529.19 361.78 369.27 592.05 575.81 TRUE FALSE 365.466992 551.0090286 422.7998094 280.1229549 599.445328 623.0344163 430.4258664 337.8982086 648.9190478 458.4596059 0.797162907 1.201870397 0.922218237 0.611009021 1.307520489 1.358973415 0.938852324 0.737029401 1.41543342 1 8.840650816 -6.781003104 24.99965637 1.115414036 0.908633374 0.198165655 0.236872496 495.8764014 633656.4659 0.076603586 0.086980597 1.66E-07 6.781003104 -0.206780661 IDFDSVSSIMASS(ph)Q ddPTM_K562_Paclitaxel_30min_R1 4 IDFDSVSSIMASSQ 14 0 A0A087WVB9;K7ERF1;Q9UBQ5;K7EK53 A0A087WVB9 EIF3K Eukaryotic translation initiation factor 3 subunit K 1 IDFDSVSSIMAS(0.001)S(0.999)Q;IDFDSVSSIMAS(0.113)S(0.887)Q;IDFDSVSSIMAS(0.001)S(0.999)Q;IDFDSVSSIMASS(1)Q 246.3 2.10E-58 117919000 18167.3 17329.9 23821.4 20584.4 17119.3 16540.9 16436.7 21449.2 14293.9 23914.6 TRUE FALSE 18421.69825 19222.03709 17807.39295 19264.20872 19451.23849 19474.19637 19555.47802 19626.95658 15666.89296 19040.79139 0.967485955 1.009518811 0.935223362 1.011733615 1.0215562 1.02276192 1.027030737 1.030784707 0.822806817 1 14.21680582 -8.733531676 24.99967804 0.911403096 1.003537031 0.362352128 0.048740971 186.6946392 167241.5176 0.03133969 0.011839604 1.85E-09 8.733531676 0.092133935 IDFIPVSPAPS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 1 IDFIPVSPAPSPTR 14 0 Q96E09 Q96E09 FAM122A Protein FAM122A 1 IDFIPVSPAPS(0.786)PT(0.214)R 162.7 0.00011587 7579100 1595.4 1773.8 1819.6 1643.8 1659.8 1416.6 1048.8 1343.7 1324.3 1621.5 TRUE FALSE 1617.740522 1967.469483 1360.219475 1538.374025 1885.892861 1667.81412 1247.804325 1229.544298 1451.504932 1291.03741 1.253054722 1.523944595 1.053586414 1.191579743 1.460757718 1.291840273 0.966512911 0.952369225 1.124293472 1 10.33431509 -7.75580029 24.75705197 1.006824651 1.297916362 0.53538141 0.130036956 97.32877207 427300.648 0.052001479 0.039123236 1.75E-08 7.75580029 0.291091712 IDFIPVSPAPSPT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 IDFIPVSPAPSPTR 14 0 Q96E09 Q96E09 FAM122A Protein FAM122A 1 IDFIPVSPAPS(0.402)PT(0.598)R 130.47 0.00018773 8083800 1405.3 1369.9 2554.5 1824.8 1284.8 1256.9 1202.5 1713 1912.2 1577.6 TRUE FALSE 1424.978536 1519.470315 1909.584881 1707.765496 1459.811512 1479.793567 1430.668098 1567.469958 2095.875354 1256.084254 1.13446095 1.209688211 1.520268147 1.359594701 1.162192351 1.178100563 1.138990552 1.247901924 1.668578638 1 10.29471752 -6.746958767 24.97444528 1.237614241 1.314428015 0.034545049 0.18682142 1026.043366 1769588.696 0.056746446 0.072924602 1.79E-07 6.746958767 0.076813774 IDFSSIAVPGTS(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 1 IDFSSIAVPGTSSPR 15 0 Q5TDH0-2;Q5TDH0;Q5TDH0-3 Q5TDH0-2 DDI2 Protein DDI1 homolog 2 1 IDFSSIAVPGT(0.128)S(0.745)S(0.128)PR 207.66 2.61E-13 201870000 4126.2 3928 5038.7 4549.9 3509.3 3452.1 3270 4692 3388.3 4864.3 TRUE FALSE 4183.97953 4356.872324 3766.617867 4258.089779 3987.326073 4064.281465 3890.465429 4293.385313 3713.761354 3872.95299 1.080307337 1.124948414 0.972544174 1.099442671 1.029531235 1.049401187 1.004521728 1.10855601 0.958896574 1 11.91921827 -2 0.153473281 0.995207846 1.344887694 0.19985745 0.049948236 115.375164 1.156757253 0.158902595 9.031320963 0.01 2 0.349679848 IDFSSIAVPGTSS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 IDFSSIAVPGTSSPR 15 0 Q5TDH0-2;Q5TDH0;Q5TDH0-3 Q5TDH0-2 DDI2 Protein DDI1 homolog 2 1 IDFSSIAVPGT(0.002)S(0.029)S(0.969)PR 196.97 3.10E-09 225580000 4739.1 4025.8 5817.7 4940.4 4563.8 4432 4883.5 5354.9 4273 5888.6 TRUE FALSE 4805.462021 4465.350458 4348.949683 4623.544856 5185.466826 5217.952972 5810.118631 4899.967821 4683.440742 4688.500088 1.024946557 0.9524049 0.927578032 0.98614584 1.105996956 1.112925856 1.239227583 1.045103493 0.998920903 1 12.19491074 -6.70651078 5.080468391 1.095329043 0.965795885 0.378214621 0.068793799 0.200101751 10.70610809 0.021724207 0.027767132 1.97E-07 6.70651078 -0.129533157 IDFYFDENPYFENK ddPTM_K562_Paclitaxel_30min_R1 1 IDFYFDENPYFENK 14 0 Q01105-2;A0A0C4DFV9;A0A087X027;Q01105-3;Q01105-4;Q01105;P0DME0 Q01105-2 SET;SETSIP Protein SET;Protein SETSIP 0 186.76 2.31E-82 0 1054.7 598.67 1563.4 1097.8 648.87 573.2 650.49 929.03 553.04 1176.2 FALSE TRUE 1069.469054 664.0348152 1168.700334 1027.392022 737.2570795 674.8489719 773.9170817 850.1031027 606.161963 936.4897944 1.141997553 0.709067861 1.247958431 1.09706697 0.787255861 0.720615404 0.826402046 0.907754796 0.647270228 1 9.871119462 -6.767352874 24.99435413 0.806133332 1.038949919 0.345382664 0.157395159 164.2624394 694281.0042 0.047533164 0.055323933 1.71E-07 6.767352874 0.232816587 IDGATQS(ph)SPAEPK ddPTM_K562_Paclitaxel_30min_R1 1 IDGATQSSPAEPK 13 0 Q32MZ4-3;Q32MZ4-2;Q32MZ4 Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 IDGAT(0.027)QS(0.486)S(0.486)PAEPK 95.183 0.011938 23216000 3229.4 2422.3 5810.1 3856.4 2790.7 2492.2 2415.9 3599.8 2343.1 4740.4 TRUE FALSE 3274.621564 2686.774906 4343.268397 3609.067765 3170.840587 2934.156678 2874.304413 3293.974521 2568.165224 3774.303878 0.867609411 0.711859721 1.150746876 0.956220771 0.840112691 0.777403403 0.761545574 0.872736967 0.680434143 1 11.88199487 -6.912509314 5.144377828 0.807070782 0.922276194 0.126965538 0.126976435 0.414756741 18.49446471 0.040346122 0.045940594 1.22E-07 6.912509314 0.115205412 IDGATQSS(ph)PAEPK ddPTM_K562_Paclitaxel_30min_R1 1 IDGATQSSPAEPK 13 0 Q32MZ4-3;Q32MZ4-2;Q32MZ4 Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 IDGAT(0.001)QS(0.344)S(0.656)PAEPK 184.51 0.00018773 16737000 3405.6 2749.9 5661.3 3909.3 2563.9 2252 2474 3668.1 1871.2 4420.2 TRUE FALSE 3453.288907 3050.143382 4232.034797 3658.574995 2913.146587 2651.36058 2943.428585 3356.472009 2050.937121 3519.360814 0.981226163 0.866675383 1.202500971 1.039556666 0.827748771 0.753364239 0.836353173 0.953716367 0.582758412 1 11.78109772 -6.765640991 23.2315562 0.820262749 1.024218179 0.353110536 0.130384847 48.0193468 265509.4092 0.039217925 0.046140848 1.72E-07 6.765640991 0.20395543 IDGATQSS(ph)PAEPKSEDADR ddPTM_K562_Paclitaxel_30min_R1 1 IDGATQSSPAEPKSEDADR 19 1 Q32MZ4-3;Q32MZ4-2;Q32MZ4 Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 IDGAT(0.061)QS(0.172)S(0.767)PAEPKSEDADR 95.5 0.00082258 13597000 992.06 1055 2085.3 993.46 946.5 803.15 738.64 1161.5 862.22 1531.5 TRUE FALSE 1005.951901 1170.188468 1558.840224 929.7439222 1075.429324 945.5773757 878.793084 1062.823325 945.0400835 1219.379459 0.824970351 0.959658996 1.278388128 0.762473006 0.88194804 0.775457852 0.720688771 0.871609996 0.775017224 1 10.25193143 IDIS(ph)PSTFR ddPTM_K562_Paclitaxel_30min_R1 4 IDISPSTFR 9 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 IDIS(0.976)PS(0.023)T(0.001)FR;IDIS(0.917)PS(0.026)T(0.057)FR;IDIS(0.957)PS(0.043)TFR;IDIS(1)PSTFR 150.15 0.00022044 1995981200 6686.41 7083.9 8056.21 6752.8 5111.59 4830.68 5192.89 7004.3 5587.84 7050.3 TRUE FALSE 6780.040369 7857.344158 6022.320148 6319.705632 5807.875098 5687.333272 6178.213769 6409.240996 6124.576999 5613.44499 1.207821646 1.399736556 1.072838544 1.125815902 1.034636504 1.013162734 1.100610014 1.141766065 1.09105496 1 12.45467071 -5.776358565 24.99925322 1.076987294 1.30377908 0.694595526 0.061289122 108.2881341 181452.8913 0.015677033 0.032847734 1.67E-06 5.776358565 0.226791786 IDIS(ph)PSTLR ddPTM_K562_Paclitaxel_30min_R1 3 IDISPSTLR 9 0 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 IDIS(0.906)PS(0.091)T(0.003)LR;IDIS(0.71)PS(0.278)T(0.012)LR;IDIS(0.69)PS(0.295)T(0.016)LR 100.82 0.010722 270838000 6308.6 5378.6 7909.8 6480.5 5242.9 4710.4 4913.9 5686.2 5327.2 7200.4 TRUE FALSE 6396.939864 5965.853737 5912.873163 6064.869736 5957.071743 5545.723303 5846.286873 5203.121818 5838.901363 5732.954528 1.115819048 1.040624639 1.031383231 1.057896013 1.039092795 0.967341233 1.019768576 0.907581212 1.01848032 1 12.48506312 -7.140677441 3.566481517 0.979030551 1.057244258 0.511670743 0.036545444 0.203992358 4.730306149 0.012214617 0.012252665 7.23E-08 7.140677441 0.078213707 IDS(ph)TEVIYQPR ddPTM_K562_Paclitaxel_30min_R1 1 IDSTEVIYQPR 11 0 K7EMR0;K7EQN8;K7EP59;Q15831-2;Q15831 K7EMR0 STK11 Serine/threonine-protein kinase STK11 1 IDS(0.985)T(0.015)EVIYQPR 176.99 0.0011879 18929000 1506.3 1225.6 1192.6 1366.6 964.19 998.41 991.16 1041.7 949.91 1001.1 TRUE FALSE 1527.392847 1359.415153 891.5133801 1278.952393 1095.529002 1175.463995 1179.227436 953.2010829 1041.1531 797.0752705 1.916246688 1.705504114 1.118480792 1.604556608 1.37443607 1.474721446 1.479443008 1.195873361 1.306216788 1 9.638572159 -2 0.124283307 0.929662125 3.559428496 0.557747884 0.176057358 75.70608524 0.64386903 1.135931116 34.6414373 0.01 2 2.62976637 IDTHPS(ph)PSHSSTVK ddPTM_K562_Paclitaxel_30min_R1 1 IDTHPSPSHSSTVK 14 0 H0Y594;A0A0C4DG98;Q8NI27-2;Q8NI27;H7C477;H0Y7U4;B7ZBA0 H0Y594 THOC2 THO complex subunit 2 1 IDTHPS(0.976)PS(0.022)HSST(0.001)VK 118.5 0.0011303 69181000 5063.1 4402.8 8507.9 5433.6 4409.3 3555.2 3842.3 5892.3 3578.1 6625.8 TRUE FALSE 5133.999021 4883.512593 6359.975421 5085.113216 5009.92131 4185.664803 4571.356367 5391.712336 3921.792492 5275.458323 0.973185401 0.925703947 1.205577797 0.963918754 0.949665603 0.793422021 0.866532553 1.022036761 0.74340318 1 12.36508072 -6.782528297 2.869469941 0.885734622 1.028807002 0.261566963 0.104603402 0.350360461 5.917776755 0.03340525 0.04127826 1.65E-07 6.782528297 0.14307238 IDVPQDLEDDLTATPLSHATVPQS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 2 IDVPQDLEDDLTATPLSHATVPQSPAR 27 0 E7EUC4;Q9NRH2 E7EUC4 SNRK SNF-related serine/threonine-protein kinase 1 IDVPQDLEDDLTATPLS(0.014)HAT(0.034)VPQS(0.952)PAR;IDVPQDLEDDLTAT(0.003)PLS(0.007)HAT(0.039)VPQS(0.951)PAR 106.19 5.59E-10 18990000 1478.14 1145.4 1697.41 1417.67 1223.11 1274.35 1316.76 1739.83 1139.41 1954.33 TRUE FALSE 1498.83852 1270.458645 1268.877852 1326.746991 1389.718289 1500.33808 1566.608336 1592.020582 1248.855422 1556.036473 0.963241252 0.816470994 0.815455083 0.852645175 0.893114212 0.964204956 1.006794097 1.023125492 0.802587499 1 10.60366016 -7.106163813 3.034210325 0.963934016 0.856140505 0.3090881 0.068893403 0.309994409 5.471339818 0.023987646 0.024457566 7.83E-08 7.106163813 -0.107793511 IDY(ph)PPS(ph)S(ph)VVQAT(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 IDYPPSSVVQATK 13 0 G5E9D8;A0A096LP62;C9J2H1;Q86UX2-4;Q86UX2-2;Q86UX2-3;Q86UX2 G5E9D8 ITIH5 Inter-alpha-trypsin inhibitor heavy chain H5 4 IDY(1)PPS(1)S(1)VVQAT(1)K 59.345 0.02424 8335900 244.75 303.28 388.78 239.6 326.05 344.42 274.19 239.68 275.58 364.53 TRUE FALSE 248.1772551 336.393136 290.6276806 224.2331284 370.4635301 405.4980511 326.2161211 219.317688 302.0506903 290.2385859 0.855080155 1.159022791 1.001340603 0.772582073 1.276410333 1.397119717 1.123958484 0.755646212 1.040697912 1 8.181095522 -8.222388696 24.84841181 0.923628813 1.090885328 0.120821495 0.186180234 1020.797705 649546.9154 0.093509963 0.053986846 5.99E-09 8.222388696 0.167256515 IEDFLERR ddPTM_K562_Paclitaxel_30min_R1 4 IEDFLERR 8 1 P46781;B5MCT8;C9JM19 P46781 RPS9 40S ribosomal protein S9 0 ;;; 154.12 2.34E-06 74768400 19611.4 21300.1 26331.2 23294.4 18914.5 19102.6 20625.4 26314.3 19901.1 28572.5 FALSE TRUE 19886.02011 23625.71695 19683.5629 21800.40145 21490.97513 22490.1779 24538.96198 24078.73597 21812.68958 22749.40882 0.874133489 1.03852004 0.86523404 0.958284306 0.944682796 0.988604938 1.078663722 1.058433481 0.958824458 1 14.47354143 -7.422548258 3.400941286 1.029396681 0.939072963 0.365952229 0.054129667 0.26522863 5.753213536 0.019783575 0.016830408 3.78E-08 7.422548258 -0.090323718 IEDS(ph)EPHIPLIDDTDAEDDAPTKR ddPTM_K562_Paclitaxel_30min_R1 2 IEDSEPHIPLIDDTDAEDDAPTKR 24 1 H0YHH6;A0A0U1RQU3;E7ERY9;P20020-6;P20020;P20020-4;P20020-1 H0YHH6 ATP2B1 Calcium-transporting ATPase;Plasma membrane calcium-transporting ATPase 1 1 IEDS(1)EPHIPLIDDTDAEDDAPTKR;IEDS(1)EPHIPLIDDTDAEDDAPTKR 75.868 0.00015466 39327000 4894.2 3796.1 7897.2 4342.6 3168.9 3654.6 3979.5 6041.7 6696.1 8649 TRUE FALSE 4962.7339 4210.571036 5903.454189 4064.085073 3600.55783 4302.691997 4734.589351 5528.419874 7339.290324 6886.329052 0.720664648 0.611439129 0.85727158 0.590167133 0.522855908 0.624816497 0.68753458 0.802810878 1.065776885 1 12.7495194 -8.557606693 2.519126034 1.036759091 0.655394644 0.74363302 0.086707209 0.151656945 1.809172282 0.076017638 0.024773772 2.77E-09 8.557606693 -0.381364447 IEDVGS(ph)DEEDDSGKDK ddPTM_K562_Paclitaxel_30min_R1 2 IEDVGSDEEDDSGKDK 16 1 P08238;Q58FF8 P08238 HSP90AB1;HSP90AB2P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta 2 1 IEDVGS(1)DEEDDSGKDK;IEDVGS(1)DEEDDSGKDK 169.98 9.58E-08 132964000 3969 2898.79 11922.2 5227 3355.2 2609.5 2496.11 5275.5 2520.17 8017.7 TRUE FALSE 4024.578245 3215.289695 8912.293158 4891.763615 3812.235044 3072.258186 2969.733842 4827.313346 2762.243589 6383.688339 0.63044717 0.503672724 1.396104052 0.766291109 0.597183766 0.481266945 0.465206583 0.756195022 0.432703391 1 12.6401745 IEDVTPIPSDS(ph)TR ddPTM_K562_Paclitaxel_30min_R1 3 IEDVTPIPSDSTR 13 0 P62263;A0A2R8Y811 P62263 RPS14 40S ribosomal protein S14 1 IEDVTPIPSDS(0.99)T(0.01)R;IEDVTPIPSDS(0.923)T(0.077)R;IEDVTPIPS(0.001)DS(0.894)T(0.105)R 203.85 3.00E-10 304679000 8266.7 9049.5 14473.5 11576.4 9776.9 7841.4 6428.2 8559.8 3611.42 8352.7 TRUE FALSE 8382.459305 10037.55501 10819.48592 10833.94152 11108.6793 9231.962191 7647.917393 7832.591561 3958.313027 6650.415155 1.260441508 1.509312544 1.626888798 1.629062437 1.670373811 1.388178328 1.149990973 1.177759791 0.595197884 1 12.69922869 -8.053511853 1.36296166 0.851072719 1.545303261 0.735065354 0.165163813 0.227819128 0.795582814 0.123207245 0.055305079 8.84E-09 8.053511853 0.694230542 IEDVTPIPSDS(ph)TRR ddPTM_K562_Paclitaxel_30min_R1 4 IEDVTPIPSDSTRR 14 1 P62263;A0A2R8Y811 P62263 RPS14 40S ribosomal protein S14 1 IEDVTPIPSDS(0.577)T(0.422)RR;IEDVTPIPSDS(0.756)T(0.244)RR;IEDVTPIPS(0.001)DS(0.823)T(0.176)RR;IEDVTPIPSDS(0.993)T(0.007)RR 227.47 2.44E-26 377506000 13529.8 14020.1 22122.2 18294.5 14364.7 12640.1 10864.8 12393.8 8813.7 12383.2 TRUE FALSE 13719.25894 15550.86193 16537.17701 17121.17265 16321.41534 14881.64426 12926.33908 11340.86933 9660.295266 9859.497043 1.391476551 1.57724698 1.677284037 1.736515826 1.655400399 1.509371542 1.311054613 1.150248261 0.979795949 1 13.26729834 -8.057697513 1.399697998 0.996349614 1.617459697 0.887480988 0.089106466 0.146153623 0.539277867 0.071641534 0.032172902 8.76E-09 8.057697513 0.621110084 IEDVTPIPSDST(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 IEDVTPIPSDSTR 13 0 P62263;A0A2R8Y811 P62263 RPS14 40S ribosomal protein S14 1 IEDVTPIPSDS(0.071)T(0.929)R;IEDVTPIPSDS(0.289)T(0.711)R 226.23 4.27E-23 37075000 4212.3 4192.2 6601 5265.7 4359.5 3389.1 3118.1 3641.9 2307.41 3706 TRUE FALSE 4271.285196 4649.918573 4934.49591 4927.98157 4953.337707 3990.1093 3709.743197 3332.497863 2529.04704 2950.715166 1.44754236 1.575861549 1.672305063 1.670097347 1.678690564 1.352251599 1.257235277 1.129386496 0.857096296 1 11.52684895 -7.91713613 1.222186142 0.951385254 1.613971064 0.895418145 0.091220963 0.147409818 0.425724089 0.069301177 0.034503354 1.21E-08 7.91713613 0.66258581 IEDVTPIPSDSTRR ddPTM_K562_Paclitaxel_30min_R1 4 IEDVTPIPSDSTRR 14 1 P62263;A0A2R8Y811 P62263 RPS14 40S ribosomal protein S14 0 ;;; 135.91 4.06E-05 59795700 10135.7 9372.5 13439.1 11298.6 9742.9 9395.7 8650.5 12156.1 9596.3 11983.5 FALSE TRUE 10277.63107 10395.82125 10046.23299 10573.95837 11070.04793 11061.89547 10291.88722 11123.36343 10518.06749 9541.256122 1.077177988 1.089565264 1.052925617 1.10823546 1.160229616 1.159375174 1.078672146 1.165817507 1.102377649 1 13.2199635 -6.459371411 7.057650838 1.121401873 1.075461099 0.092321771 0.047498568 0.464385413 44.23840897 0.012690099 0.018764748 3.47E-07 6.459371411 -0.045940774 IEEAMDGSET(ph)PQLFTVLPEKR ddPTM_K562_Paclitaxel_30min_R1 2 IEEAMDGSETPQLFTVLPEKR 21 1 E9PPJ0;Q13435 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 IEEAMDGS(0.052)ET(0.948)PQLFTVLPEKR;IEEAMDGS(0.247)ET(0.753)PQLFTVLPEKR 135.66 3.57E-11 82242000 5458.3 3533.1 6485.5 3800.3 3145.2 3332.4 4416.8 6832.6 6837.8 10273.8 TRUE FALSE 5534.73304 3918.855806 4848.155313 3556.565768 3573.629489 3923.354351 5254.864743 6252.127982 7494.601242 8179.993921 0.676618234 0.479078083 0.592684464 0.434788314 0.436874345 0.479628028 0.64240448 0.764319392 0.916211102 1 12.99788406 -8.452662886 1.399365897 0.988404346 0.511486734 0.855221682 0.072181192 0.153874026 0.530306697 0.065990277 0.022670979 3.53E-09 8.452662886 -0.476917612 IEEDNLTYQHLLPES(ph)PEPSASHALSDYETSEK ddPTM_K562_Paclitaxel_30min_R1 1 IEEDNLTYQHLLPESPEPSASHALSDYETSEK 32 0 Q5JTU8;B1AMJ5;A0A0A0MRG9;Q96SN8-4;Q96SN8-3;Q96SN8-2;Q96SN8 Q5JTU8 CDK5RAP2 CDK5 regulatory subunit-associated protein 2 1 IEEDNLTYQHLLPES(0.562)PEPS(0.309)AS(0.101)HALS(0.019)DY(0.007)ET(0.001)SEK 80.022 6.14E-06 15617000 1399.9 1234.3 2814.5 1894.6 1376.4 1109.4 1076.1 1809 1248.5 2213.3 TRUE FALSE 1419.502919 1369.065048 2103.944666 1773.088836 1563.888983 1306.136513 1280.284357 1655.314159 1368.424003 1762.228245 0.805515927 0.776894283 1.193911556 1.006162988 0.887449731 0.741184643 0.726514491 0.939330171 0.776530513 1 10.78318508 -6.999801162 19.939461 0.824730984 0.950742363 0.126526594 0.132784989 1.063125659 105840.5939 0.04350826 0.048562484 1.00E-07 6.999801162 0.12601138 IEHSFWR ddPTM_K562_Paclitaxel_30min_R1 1 IEHSFWR 7 0 Q16531;Q16531-2 Q16531 DDB1 DNA damage-binding protein 1 0 134.06 1.98E-10 0 2593.9 3278.2 3468.8 3196.9 2528.1 2751.3 3388.8 4311.3 2631.7 4687.4 FALSE TRUE 2630.222603 3636.124962 2593.058538 2991.865143 2872.470021 3239.204425 4031.807109 3945.028155 2884.486544 3732.105307 0.704755731 0.97428252 0.694797795 0.801656142 0.769664783 0.867929535 1.080303683 1.057051672 0.772884553 1 11.86577398 -7.552528021 6.433115868 0.982256046 0.796831298 0.415417363 0.10514341 0.176271805 23.23481449 0.039272112 0.030715783 2.80E-08 7.552528021 -0.185424748 IEQHYFEDR ddPTM_K562_Paclitaxel_30min_R1 2 IEQHYFEDR 9 0 C9JNK6;O75431-2;O75431 C9JNK6 MTX2 Metaxin-2 0 ; 115.23 0.0084064 10005100 2774.8 2677.8 3642 3118.8 3039.8 2492.1 2538.6 3482.3 2396.03 3378.3 FALSE TRUE 2813.655761 2970.17126 2722.532056 2918.774127 3453.872224 2934.038944 3020.286098 3186.456879 2626.179387 2689.800606 1.046046222 1.104234735 1.012168728 1.085126578 1.28406255 1.090801652 1.122866168 1.184644272 0.976347236 1 11.39328351 -2.072461929 19.06841179 1.100077753 0.005485461 0 0.088215802 0 0 0.020012402 0 0.008463268 2.072461929 -1.094592292 IERPGEGS(ph)PMVDNPMR ddPTM_K562_Paclitaxel_30min_R1 1 IERPGEGSPMVDNPMR 16 1 A0A087WVR3;A0A087WTW0;Q96T88;Q96T88-2 A0A087WVR3 UHRF1 E3 ubiquitin-protein ligase UHRF1 1 IERPGEGS(1)PMVDNPMR 68.49 0.03025 27723000 951.89 1090.4 1180.6 960.6 968.17 990.69 1070.7 1090 749.88 1417.3 TRUE FALSE 965.2193968 1209.453559 882.5429285 898.9914155 1100.051145 1166.374962 1273.859736 997.3976964 821.9093246 1128.453482 0.855347085 1.071779722 0.782081798 0.79665793 0.974830742 1.033604823 1.128854451 0.883862483 0.728350205 1 10.14013123 -6.824558631 24.99833501 0.964741741 0.883673523 0.094431917 0.12227896 177.3955008 70255.44401 0.040697599 0.046146759 1.50E-07 6.824558631 -0.081068218 IES(ph)AS(ph)MS(ph)GAGRK ddPTM_K562_Paclitaxel_30min_R1 1 IESASMSGAGRK 12 1 E7ERG8;Q9NZR2 E7ERG8 LRP1B Low-density lipoprotein receptor-related protein 1B 3 IES(1)AS(1)MS(1)GAGRK 45.357 0.031129 0 584.46 502.87 544.9 691.38 474.21 401.09 500.86 711.49 604.1 459.3 TRUE FALSE 592.6442432 557.7750472 407.3332558 647.0379813 538.8054304 472.2176799 595.8955703 651.0444835 662.1265042 365.6944079 1.620599688 1.525249047 1.113862413 1.76934065 1.473376182 1.291290405 1.629490519 1.780296525 1.810600572 1 8.514494755 IES(ph)DEEEDFENVGK ddPTM_K562_Paclitaxel_30min_R1 2 IESDEEEDFENVGK 14 0 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 IES(1)DEEEDFENVGK;IES(1)DEEEDFENVGK 210.37 2.24E-13 53706000 3277.2 3123.6 6703.9 4339.3 2885.5 2867.3 2637 3991.2 2086.85 5505.7 TRUE FALSE 3323.090911 3464.645211 5011.417532 4060.99672 3278.553952 3375.775396 3137.356984 3652.122648 2287.301267 4383.635318 0.758067373 0.790358905 1.143210411 0.926399307 0.74790755 0.770085819 0.715697533 0.833126477 0.521781832 1 12.09791207 -6.762896699 24.97429158 0.754235355 0.91340554 0.176095111 0.146521226 61.46799171 1053392.312 0.044332213 0.053025303 1.73E-07 6.762896699 0.159170184 IES(ph)PKLER ddPTM_K562_Paclitaxel_30min_R1 1 IESPKLER 8 1 A0A0A0MSM0;Q92598-2;Q92598-3;Q92598;Q92598-4;Q5TBM3 A0A0A0MSM0 HSPH1 Heat shock protein 105 kDa 1 IES(1)PKLER 127.51 0.0039548 406290000 5563.1 4452.9 10113 5906.4 4351.4 3707.3 3111.5 5676.7 5092.5 7215.7 TRUE FALSE 5641.000564 4939.082681 7559.848074 5527.58994 4944.13435 4364.737602 3701.890882 5194.428902 5581.657379 5745.136379 0.981874092 0.859698074 1.315869211 0.962133808 0.860577369 0.759727414 0.644352133 0.904143707 0.971544801 1 12.48812542 -6.660697148 3.993267764 0.835989933 1.047096358 0.264285824 0.143553067 0.287679538 8.510688712 0.045196402 0.058822704 2.18E-07 6.660697148 0.211106425 IESDVQEPT(ph)EPEDDLDIMLGNK ddPTM_K562_Paclitaxel_30min_R1 2 IESDVQEPTEPEDDLDIMLGNK 22 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 IES(0.002)DVQEPT(0.998)EPEDDLDIMLGNK;IES(0.001)DVQEPT(0.999)EPEDDLDIMLGNK 100.17 0.00032113 8563300 4506.2 3299.1 6240.4 4154 2955.6 2622.4 3284.8 5285.4 5976.7 6421.7 TRUE FALSE 4569.300703 3659.306895 4664.93384 3887.581033 3358.202759 3087.44582 3908.073652 4836.37228 6550.78874 5112.954015 0.893671386 0.715693293 0.912375473 0.760339526 0.656802848 0.603847758 0.764347506 0.945905687 1.281214093 1 12.31994134 -8.479711168 3.495071961 1.139944063 0.754055869 0.660150896 0.109785652 0.141282395 3.469826193 0.077473053 0.030084441 3.31E-09 8.479711168 -0.385888194 IET(ph)DEEESCDNAHGDANQPAR ddPTM_K562_Paclitaxel_30min_R1 2 IETDEEESCDNAHGDANQPAR 21 0 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 IET(0.906)DEEES(0.094)CDNAHGDANQPAR;IET(1)DEEESCDNAHGDANQPAR 124.91 2.54E-07 84476000 1726.48 1202.43 2786 2131 1546.96 1384.36 1504.77 2068.73 1329.72 2133.39 TRUE FALSE 1750.656047 1333.715374 2082.639843 1994.327198 1757.682142 1629.856809 1790.292252 1892.978474 1457.445547 1698.603947 1.030644047 0.785183254 1.226089135 1.174097824 1.034780442 0.95952727 1.053978625 1.114431929 0.858025527 1 10.73013379 -8.760778938 24.99999082 0.929012775 1.045661802 0.138217971 0.11812659 36.7316713 1390891.166 0.095117741 0.031031176 1.73E-09 8.760778938 0.116649027 IEVLDS(ph)PASK ddPTM_K562_Paclitaxel_30min_R1 1 IEVLDSPASK 10 0 Q8N5I9 Q8N5I9 C12orf45 Uncharacterized protein C12orf45 1 IEVLDS(0.832)PAS(0.168)K 113.61 0.0044377 15054000 2347.3 2306 4605.3 2769.5 2181.9 2102.1 1600.8 2907.3 2285.4 3158.2 TRUE FALSE 2380.169442 2557.776878 3442.635057 2591.876666 2479.11172 2474.87792 1904.543443 2660.306718 2504.922881 2514.557106 0.946556129 1.017187827 1.369082074 1.030748778 0.985903925 0.984220209 0.757407115 1.057962339 0.99616862 1 11.2960886 -6.518107077 21.47615078 0.96187385 1.117957991 0.216743251 0.125436323 48.7739962 219522.6047 0.037997587 0.050685803 3.03E-07 6.518107077 0.156084141 IFDFDDDGTLNREDLSR ddPTM_K562_Paclitaxel_30min_R1 2 IFDFDDDGTLNREDLSR 17 1 Q99828;Q99828-2 Q99828 CIB1 Calcium and integrin-binding protein 1 0 ; 124.09 0.00034949 6446600 1392.09 1038.28 1546.8 1299.23 1396.25 1254.75 1241.82 1628.29 1442.73 2010.26 FALSE TRUE 1411.583555 1151.642922 1156.291209 1215.903203 1586.442889 1477.262295 1477.448862 1489.956601 1581.310663 1600.567909 0.881926688 0.719521437 0.722425586 0.759669862 0.991174995 0.922961336 0.923077899 0.930892462 0.987968492 1 10.64436817 -6.754940803 24.98454951 0.952257867 0.76375551 0.773017493 0.049881149 71.13648653 273491.1665 0.014832561 0.018689519 1.76E-07 6.754940803 -0.188502357 IFLGADAEEEIGT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 IFLGADAEEEIGTPR 15 0 P28749;P28749-2;H0YE05 P28749 RBL1 Retinoblastoma-like protein 1 1 IFLGADAEEEIGT(1)PR;IFLGADAEEEIGT(1)PR 203.04 7.61E-10 9710400 1015.09 842.22 1167.68 1035.36 883.85 977.99 951.01 1031.93 1040.16 1420.06 TRUE FALSE 1029.304392 934.1764278 872.8847423 968.9566437 1004.245334 1151.422795 1131.459183 944.2611054 1140.072016 1130.650993 0.910364382 0.826228813 0.772019614 0.856990044 0.888200992 1.018371542 1.000714801 0.835148168 1.008332388 1 10.14293795 -6.983136672 3.304019138 0.963835945 0.83585068 0.5224951 0.058903055 0.211421375 4.832562164 0.020189471 0.022140894 1.04E-07 6.983136672 -0.127985265 IFQGSFGGPTLYENPHYQS(ph)PNMHR ddPTM_K562_Paclitaxel_30min_R1 2 IFQGSFGGPTLYENPHYQSPNMHR 24 0 Q8TDN6 Q8TDN6 BRIX1 Ribosome biogenesis protein BRX1 homolog 1 IFQGSFGGPTLYENPHYQS(1)PNMHR;IFQGSFGGPTLYENPHY(0.002)QS(0.998)PNMHR 144.95 5.92E-20 37408000 1121.04 924.08 1119.02 730.37 769.17 657.2 1072.06 1993.42 784.21 1918.91 TRUE FALSE 1136.738019 1024.974179 836.5095611 683.5273372 873.9439762 773.7451925 1275.477788 1824.066528 859.5368744 1527.835089 0.744018793 0.670867024 0.547512992 0.447382929 0.572014599 0.506432401 0.834826872 1.193889669 0.56258485 1 10.57727311 -7.880916819 5.106864332 0.927331117 0.578400009 0.474566046 0.164348338 0.175314445 7.094331135 0.068485952 0.045661275 1.32E-08 7.880916819 -0.348931109 IFRDGEEAGAYDGPR ddPTM_K562_Paclitaxel_30min_R1 1 IFRDGEEAGAYDGPR 15 1 H7BZJ3;P30101 H7BZJ3 PDIA3 Protein disulfide-isomerase A3 0 132.51 0.0001934 54340000 1517.8 1264.5 1647.1 1482.8 1382.2 1212 1279.2 1650.9 1621.1 1950.1 FALSE TRUE 1539.053883 1402.562386 1231.269234 1387.699845 1570.479041 1426.931183 1521.921522 1510.64574 1776.813898 1552.66855 0.99123144 0.903323756 0.79300198 0.8937515 1.011470891 0.919018539 0.980197301 0.972935106 1.144361363 1 10.60053417 -7.935653946 0.908862707 1.056821371 0.901513982 0.404895568 0.067670412 0.607530839 0.944285567 0.057691761 0.029199204 1.16E-08 7.935653946 -0.155307389 IFREEQNGEDEDGGWR ddPTM_K562_Paclitaxel_30min_R1 1 IFREEQNGEDEDGGWR 16 1 I1E4Y6;Q6Y7W6;Q6Y7W6-4;Q6Y7W6-5;E7ESB6;C9JHW1;C9JH78;C9IYH5;Q6Y7W6-3 I1E4Y6;Q6Y7W6-3 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 0 135.61 1.75E-06 19683000 761.07 572.41 820.08 713.79 720.69 628.99 578.43 776.73 588.65 754 FALSE TRUE 771.7273281 634.9076596 613.0406614 668.0107042 818.8601794 740.532545 688.1840729 710.7419383 645.1924627 600.3343861 1.285495794 1.057590027 1.02116533 1.112731037 1.364006791 1.233533448 1.146334591 1.183910092 1.074721818 1 9.229622495 -8.954132005 3.153672834 1.000598288 1.171785112 0.260142209 0.096915215 0.341518305 7.462507462 0.101161543 0.027055093 1.11E-09 8.954132005 0.171186824 IFSLS(ph)GTLETVR ddPTM_K562_Paclitaxel_30min_R1 1 IFSLSGTLETVR 12 0 B4DEM9;Q9Y2S7 B4DEM9 POLDIP2 Polymerase delta-interacting protein 2 1 IFSLS(0.733)GT(0.267)LETVR 148.89 0.00048152 10625000 705.44 756.61 690.62 699.49 439.78 681.84 548.58 851.93 430.55 842.72 TRUE FALSE 715.3183365 839.2192385 516.2644395 654.6278422 499.6854815 802.7547505 652.6701912 779.5532289 471.9062512 670.9732014 1.066090769 1.250749265 0.769426318 0.975639326 0.744717495 1.196403595 0.972721697 1.161824686 0.703316094 1 9.390111336 -5.745497867 24.99997818 0.950837632 1.158420015 0.222811311 0.161876854 367.0931485 575677.9814 0.03972896 0.104376295 1.80E-06 5.745497867 0.207582383 IFSLSGT(ph)LETVR ddPTM_K562_Paclitaxel_30min_R1 1 IFSLSGTLETVR 12 0 B4DEM9;Q9Y2S7 B4DEM9 POLDIP2 Polymerase delta-interacting protein 2 1 IFSLS(0.015)GT(0.985)LETVR 171.62 0.00028223 9982200 689.14 599.95 795.38 669.38 768.42 643.3 627.85 953.46 961.92 1040.8 TRUE FALSE 698.7900862 665.4545699 594.5764819 626.4489628 873.0918135 757.3802226 746.9812599 872.4576217 1054.316714 828.6843887 0.843252384 0.803025348 0.717494489 0.755956033 1.053587862 0.913954978 0.901406217 1.052822563 1.272277755 1 9.694678934 -7.527816844 0.730935266 1.116105101 0.778982605 0.573543023 0.103782942 0.521909708 0.58032675 0.085659224 0.065915858 2.97E-08 7.527816844 -0.337122496 IFTS(ph)IGEDYDER ddPTM_K562_Paclitaxel_30min_R1 1 IFTSIGEDYDER 12 0 D6RBK0;C9JZ20;E7ESE2;E9PCW0;C9JW96;P35232-2;P35232 D6RBK0 PHB Prohibitin 1 IFT(0.259)S(0.741)IGEDYDER 98.407 0.010543 2337400 670.46 664.98 1055.5 875.64 808.06 942.59 800.43 798.18 714.14 1012.5 TRUE FALSE 679.8485085 737.5847652 789.0259707 819.4803696 918.1314526 1109.745102 952.307414 730.3696269 782.7363379 806.1519442 0.843325521 0.914945093 0.978755899 1.016533391 1.138906206 1.376595454 1.181300152 0.905994995 0.970953855 1 9.654907975 -6.075552665 1.567804646 1.104605866 0.866723895 0.315800403 0.124201886 0.554887383 2.58929767 0.044165147 0.124987611 8.40E-07 6.075552665 -0.237881971 IFTSIGEDYDER ddPTM_K562_Paclitaxel_30min_R1 2 IFTSIGEDYDER 12 0 D6RBK0;C9JZ20;E7ESE2;E9PCW0;C9JW96;P35232-2;P35232 D6RBK0 PHB Prohibitin 0 ; 187.16 0.0032399 89416000 1439.38 1684.24 2003.09 1627.58 1498.71 1341.4 1384.45 1697.31 1436.08 1816.64 FALSE TRUE 1459.535761 1868.131019 1497.385156 1523.194304 1702.859675 1579.278456 1647.14216 1553.112921 1574.021901 1446.407771 1.009076272 1.291565945 1.035244131 1.053087749 1.177302632 1.091862535 1.138781327 1.073772523 1.088228321 1 10.49825862 -9.305319783 0.892421794 1.000027987 1.117027124 0.156883019 0.076582755 1.901854714 2.867749066 0.071297263 0.024085269 4.95E-10 9.305319783 0.116999137 IFVGGLS(ph)PDTPEEK ddPTM_K562_Paclitaxel_30min_R1 1 IFVGGLSPDTPEEK 14 0 D6RAF8;Q14103-3;Q14103;D6RF44;H0YA96;H0Y8G5;Q14103-4;Q14103-2 D6RAF8 HNRNPD Heterogeneous nuclear ribonucleoprotein D0 1 IFVGGLS(0.794)PDT(0.206)PEEK 105.03 0.0045818 7712400 3242.2 3010.8 5871.2 3694.5 3043.1 2770.5 2662.7 3797.9 3243.4 5088.8 TRUE FALSE 3287.600803 3339.529326 4388.942946 3457.551306 3457.62174 3261.809275 3167.933425 3475.244689 3554.943062 4051.699767 0.811412738 0.824229217 1.083234987 0.853358221 0.853375605 0.805047132 0.781877633 0.857725125 0.87739548 1 11.98431156 -5.553358464 24.99992402 0.879829642 0.814615509 0.093338347 0.085385604 475.3354616 389875.647 0.022664456 0.059965698 2.80E-06 5.553358464 -0.065214134 IFYGEKQPEDDSSQAFISTQNGS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 IFYGEKQPEDDSSQAFISTQNGSPR 25 1 Q5TCQ9-3;Q5TCQ9-2;Q5TCQ9;Q5TCQ9-1 Q5TCQ9-3 MAGI3 "Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3" 1 IFYGEKQPEDDS(0.158)S(0.158)QAFIS(0.113)T(0.085)QNGS(0.486)PR;IFYGEKQPEDDSS(0.001)QAFIS(0.095)T(0.019)QNGS(0.885)PR 81.001 0.00012807 21677200 1102.48 1169.4 2114.08 1529.65 1117.58 1145.89 1094.5 1665.43 1710.54 1942.65 TRUE FALSE 1117.918121 1297.079047 1580.354357 1431.545095 1269.813317 1349.097502 1302.175661 1523.941326 1874.84501 1546.736864 0.722759086 0.838590634 1.021734462 0.925525944 0.820962729 0.87222173 0.841885709 0.985262175 1.21212926 1 10.59501207 -8.51431373 4.694060325 1.107637817 0.871284026 0.558567192 0.086611096 0.140125684 8.363730084 0.058394896 0.023277354 3.06E-09 8.51431373 -0.236353791 IFYPEIEEVQALDDT(ph)ERGSGGFGSTGKN ddPTM_K562_Paclitaxel_30min_R1 1 IFYPEIEEVQALDDTERGSGGFGSTGKN 28 2 H0YNW5;A0A0C4DGL3;P33316;P33316-2 H0YNW5;P33316-2 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 IFYPEIEEVQALDDT(0.493)ERGS(0.493)GGFGS(0.01)T(0.003)GKN 80.813 9.74E-05 27244000 868.06 568.32 1437.1 1085.7 740.44 624.38 817.12 1069.2 925.51 1476 TRUE FALSE 880.2155182 630.3710995 1074.286331 1016.068061 841.3004638 735.1050263 972.1642543 978.3647863 1014.409371 1175.19039 0.748998227 0.536399127 0.914138118 0.864598681 0.715884397 0.625519944 0.827239793 0.832515986 0.863187258 1 10.19867879 -8.885533079 0.963447903 0.9959932 0.74073948 0.375568447 0.10366103 0.61639744 1.277084 0.103963857 0.035953747 1.30E-09 8.885533079 -0.25525372 IFYPEIEEVQALDDTERGS(ph)GGFGSTGKN ddPTM_K562_Paclitaxel_30min_R1 1 IFYPEIEEVQALDDTERGSGGFGSTGKN 28 2 H0YNW5;A0A0C4DGL3;P33316;P33316-2 H0YNW5;P33316-2 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 IFYPEIEEVQALDDT(0.215)ERGS(0.784)GGFGS(0.001)TGKN 104.77 7.82E-08 37041000 1060.5 854.62 1301.4 943.16 680.73 644.23 830 1094.8 925.33 1213.2 TRUE FALSE 1075.350272 947.9303017 972.8454745 882.669939 773.4569509 758.4751451 987.4881671 1001.789906 1014.212081 965.9491741 1.113257613 0.981345942 1.007139403 0.913785076 0.800722203 0.785212271 1.022298267 1.03710416 1.04996423 1 9.91580347 -10.6562565 12.21473089 0.999998785 0.961179259 0.005133256 0.100988517 0 0 0.108354091 0.026279727 2.21E-11 10.6562565 -0.038819526 IGAEVYHNLK ddPTM_K562_Paclitaxel_30min_R1 2 IGAEVYHNLK 10 0 P06733;K7EM90;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase;Enolase 0 ; 107.79 0.012126 39980000 11057.9 9825.5 17881.4 12482.7 9306.5 8859.1 10380.9 15892.1 14006 18558.2 FALSE TRUE 11212.74472 10898.28132 13367.01942 11682.11549 10574.20286 10430.137 12350.62158 14541.96691 15351.33888 14776.02865 0.75884698 0.737564983 0.904642224 0.790612672 0.715632266 0.705882294 0.835855281 0.98415936 1.038935376 1 13.85097095 -8.214210198 2.970862229 1.017044453 0.772086408 0.801372259 0.053221611 0.124216697 2.16939858 0.033749567 0.016335711 6.11E-09 8.214210198 -0.244958045 IGAVLFT(ph)VVT(ph)PMMNPFIY(ph)SLR ddPTM_K562_Paclitaxel_30min_R1 1 IGAVLFTVVTPMMNPFIYSLR 21 0 A0A286YFI5;Q8NGQ3 A0A286YFI5 OR1S2 Olfactory receptor 1S2 3 IGAVLFT(1)VVT(1)PMMNPFIY(0.729)S(0.271)LR 75.564 0.0083382 19283000 144.74 220.29 110.38 58.35 112.52 125.11 0 150.5 133.93 0 TRUE FALSE 146.7668066 244.3420072 82.51320384 54.60769216 127.847129 147.2965019 0 137.7140856 146.7945749 0 0 IGAVLFT(ph)VVT(ph)PMMNPFIYS(ph)LR ddPTM_K562_Paclitaxel_30min_R1 2 IGAVLFTVVTPMMNPFIYSLR 21 0 A0A286YFI5;Q8NGQ3 A0A286YFI5 OR1S2 Olfactory receptor 1S2 3 IGAVLFT(1)VVT(1)PMMNPFIY(0.38)S(0.62)LR;IGAVLFT(1)VVT(1)PMMNPFIY(0.381)S(0.619)LR 61.477 0.0067327 36189000 0 0 219.95 225.491 37.977 124 162.5 113.05 116.02 156.71 TRUE FALSE 0 0 164.4209022 211.0290165 43.15011036 145.989659 193.3335267 103.4456969 127.1642394 124.772416 0 0 1.317766438 1.691311456 0.345830527 1.170047545 1.549489326 0.829075049 1.019169489 1 6.963155216 -5.755231714 25 1.119779431 2.25E-05 0.612143219 0.355105751 94.69333684 381346.0623 0.092654822 0.232490653 1.76E-06 5.755231714 -1.11975693 IGDEYAEDS(ph)S(ph)DEEDIR ddPTM_K562_Paclitaxel_30min_R1 1 IGDEYAEDSSDEEDIR 16 0 Q14137;Q14137-2;A0A075B729 Q14137 BOP1 Ribosome biogenesis protein BOP1 2 IGDEY(0.387)AEDS(0.63)S(0.982)DEEDIR 119.27 0.0021349 23021000 1717.8 1857.6 2561.3 1977 1541.2 1647.4 1763.2 2311.6 1157 2894.6 TRUE FALSE 1741.8545 2060.41905 1914.668137 1850.204069 1751.137533 1939.543259 2097.757995 2115.215151 1268.13502 2304.678931 0.755790525 0.894015658 0.830774348 0.802803394 0.759818432 0.841567662 0.910217023 0.917791681 0.550243681 1 11.17035006 -7.472479367 24.84427736 0.843166905 0.812929331 0.022162339 0.115562447 2165.071437 1067269.172 0.039809188 0.035107727 3.37E-08 7.472479367 -0.030237574 IGEGTY(ph)GVVYK ddPTM_K562_Paclitaxel_30min_R1 4 IGEGTYGVVYK 11 0 A0A087WZZ9;P06493;E5RIU6;A0A024QZP7;P06493-2;G3V317;K7ELV5;E7ESI2;G3V5T9;P24941-2;P24941;Q00526 A0A087WZZ9 CDK1;CDC2;CDK2;CDK3 Cyclin-dependent kinase 1;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 1 IGEGT(0.027)Y(0.973)GVVYK;IGEGT(0.034)Y(0.966)GVVYK;IGEGT(0.131)Y(0.869)GVVYK;IGEGT(0.001)Y(0.999)GVVYK 179.1 0.00053967 4065850000 9118.2 7112.9 17536.7 9714.5 6405.4 5570.2 5603.9 9162.6 8724.2 11100.7 TRUE FALSE 9245.882932 7889.510476 13109.34319 9091.45545 7277.923924 6557.996761 6667.210771 8384.179939 9562.198391 8838.371247 1.046107102 0.892643028 1.483230657 1.028634711 0.82344628 0.741991548 0.75434835 0.948611425 1.081895988 1 13.10956482 -6.544476328 8.011604783 0.878801063 1.138879921 0.305035773 0.169098815 0.223702446 65.37634364 0.051927795 0.068056309 2.85E-07 6.544476328 0.260078858 IGEGTYGVVYK ddPTM_K562_Paclitaxel_30min_R1 2 IGEGTYGVVYK 11 0 A0A087WZZ9;P06493;E5RIU6;A0A024QZP7;P06493-2;G3V317;K7ELV5;E7ESI2;G3V5T9;P24941-2;P24941;Q00526 A0A087WZZ9 CDK1;CDC2;CDK2;CDK3 Cyclin-dependent kinase 1;Cyclin-dependent kinase 2;Cyclin-dependent kinase 3 0 ; 166.19 0.0031279 45175000 2051.41 1460.77 3243.7 2112.65 1527.17 1197.5 1241.84 1923.18 2250.8 2675.9 FALSE TRUE 2080.136069 1620.261809 2424.787817 1977.154085 1735.196409 1409.859811 1477.472657 1759.793855 2466.999397 2130.550111 0.976337547 0.760489885 1.1381041 0.928001681 0.814435859 0.66173511 0.693470034 0.825980973 1.157916626 1 11.05701027 -4.836996377 16.36256209 0.874674943 48.2432422 0.021881305 0.162907199 519.6622861 52169.36765 0.041217602 80.02849005 1.46E-05 4.836996377 47.36856726 IGELGAPEVWGLS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 IGELGAPEVWGLSPK 15 0 A0A494C050;Q8N5F7 A0A494C050 NKAP NF-kappa-B-activating protein 1 IGELGAPEVWGLS(1)PK;IGELGAPEVWGLS(1)PK 153.92 4.74E-05 82261000 8351.3 7136.1 17383.8 9806.5 6920.7 6216.1 6704.6 9789.7 5496 13535.6 TRUE FALSE 8468.243966 7915.243531 12995.04469 9177.554982 7863.416508 7318.438057 7976.76285 8958.00388 6023.915357 10777.03729 0.785767344 0.7344545 1.205808641 0.851584228 0.729645476 0.679076991 0.74016287 0.831212108 0.558958385 1 13.395673 -6.628248365 5.145949424 0.744315726 0.911760518 0.158918295 0.156904599 0.350678942 14.59484959 0.046523483 0.060487483 2.35E-07 6.628248365 0.167444793 IGENPFTLIR ddPTM_K562_Paclitaxel_30min_R1 2 IGENPFTLIR 10 0 H3BPR7 H3BPR7 TYRO3 0 ; 107.21 0.012428 15092500 3436.8 3394 4022.6 3503.9 3124.2 2733.5 3901.7 3658.2 2747.21 4709.2 FALSE TRUE 3484.925803 3764.568398 3007.044879 3279.175537 3549.768933 3218.247845 4642.027207 3347.413076 3011.091795 3749.462455 0.929446779 1.004028829 0.801993596 0.874572176 0.94674076 0.858322462 1.238051391 0.892771462 0.803072929 1 11.87246806 IGFPWSEIR ddPTM_K562_Paclitaxel_30min_R1 1 IGFPWSEIR 9 0 P26038;A0A2R8Y7M3;A0A2R8Y5S7;P35241-4;P35241;P35241-5;E7EQR4;P15311 P26038;A0A2R8Y7M3;E7EQR4 MSN;RDX;EZR Moesin;Radixin;Ezrin 0 128.61 0.0063098 6509200 1796.3 1883.5 2483.6 2290.2 2351.6 1904.6 1995.4 2319.9 1780.6 2582.1 FALSE TRUE 1821.453742 2089.1469 1856.584463 2143.316823 2671.927733 2242.354068 2374.016733 2122.810015 1951.634586 2055.866603 0.885978565 1.016187965 0.9030666 1.042536914 1.29966007 1.090709906 1.154752322 1.032562138 0.949300204 1 11.00553094 -6.514260801 24.9757024 1.100053412 0.948124216 0.332935421 0.095257189 473.389859 1371935.063 0.028549575 0.038839553 3.06E-07 6.514260801 -0.151929196 IGHPAPNFK ddPTM_K562_Paclitaxel_30min_R1 1 IGHPAPNFK 9 0 A0A0A0MSI0;Q06830;A0A0A0MRQ5 A0A0A0MSI0 PRDX1 Peroxiredoxin-1 0 94.114 0.029539 5539200 4348.1 4034.2 6884.8 4323.4 3796.8 3270.9 3277.7 4538.6 4559 5395.3 FALSE TRUE 4408.986815 4474.667599 5146.64709 4046.116475 4313.98844 3850.948189 3899.626464 4153.017601 4996.91232 4295.734898 1.026363805 1.041653571 1.198083032 0.941891567 1.004249224 0.896458529 0.907790298 0.966776977 1.163226418 1 12.06868925 -6.294565179 24.99911101 0.975685581 1.083995561 0.256644998 0.081741643 850.0994251 641544.3168 0.023646712 0.035075899 5.07E-07 6.294565179 0.108309981 IGPLGLS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 IGPLGLSPK 9 0 P30050 P30050 RPL12 60S ribosomal protein L12 1 IGPLGLS(1)PK 98.898 0.011626 50505000 6797.7 5425.4 12258 7716 5430.7 4733 3972.9 6204.9 5685.9 8359.9 TRUE FALSE 6892.888773 6017.76352 9163.316295 7221.130296 6170.453283 5572.331095 4726.737035 5677.755015 6232.0561 6656.147791 1.035567266 0.904091031 1.376669597 1.084881304 0.92703069 0.837170578 0.710131022 0.853009157 0.936285716 1 12.70047175 -6.857506406 3.371997955 0.851086343 1.107483811 0.417267312 0.129961846 0.232783099 5.221148919 0.043527528 0.051034121 1.39E-07 6.857506406 0.256397468 IGRIEDVTPIPSDS(ph)TR ddPTM_K562_Paclitaxel_30min_R1 2 IGRIEDVTPIPSDSTR 16 1 P62263;A0A2R8Y811 P62263 RPS14 40S ribosomal protein S14 1 IGRIEDVTPIPS(0.012)DS(0.788)T(0.199)R;IGRIEDVTPIPS(0.016)DS(0.892)T(0.092)R 105.38 0.0011772 53556000 3177.9 2854.5 4376.2 3422.5 2667.8 2398.2 2177.24 2470.4 2999.2 2948.1 TRUE FALSE 3222.400405 3166.163963 3271.374186 3202.996169 3031.199526 2823.487098 2590.359924 2260.5241 3287.286561 2347.275602 1.372825757 1.348867581 1.393689852 1.364559051 1.291369247 1.20287839 1.103560196 0.963041621 1.400468934 1 11.19677153 -7.263028615 1.803075968 1.115098124 1.370106697 0.520235597 0.109769001 0.28213357 1.808678849 0.04396904 0.040129439 5.46E-08 7.263028615 0.255008574 IGRIEDVTPIPSDS(ph)TRR ddPTM_K562_Paclitaxel_30min_R1 1 IGRIEDVTPIPSDSTRR 17 2 P62263;A0A2R8Y811 P62263 RPS14 40S ribosomal protein S14 1 IGRIEDVTPIPSDS(0.5)T(0.5)RR 110.33 0.0052309 47414000 1911.9 1737 3052.2 2202.4 1605.9 1701 1148.1 1321.5 2232.1 1536.4 TRUE FALSE 1938.672499 1926.651534 2281.634361 2061.147922 1824.650768 2002.648467 1365.945982 1209.230326 2446.503178 1223.280837 1.584813921 1.574987097 1.865176248 1.684934367 1.491604146 1.637112597 1.116625014 0.988514076 1.999952182 1 10.25653994 -7.744447972 24.56588049 1.2753157 1.642390445 0.286301022 0.281140685 253.9954732 367222.2196 0.105109217 0.081191919 1.80E-08 7.744447972 0.367074745 IGRIEDVTPIPSDST(ph)RR ddPTM_K562_Paclitaxel_30min_R1 1 IGRIEDVTPIPSDSTRR 17 2 P62263;A0A2R8Y811 P62263 RPS14 40S ribosomal protein S14 1 IGRIEDVTPIPSDS(0.073)T(0.927)RR 140.56 4.34E-08 51337000 1198.2 986.39 1583.1 1612.1 1040.2 1196.8 791.67 809.07 1500.4 930.1 TRUE FALSE 1214.978497 1094.087396 1183.426825 1508.707121 1181.892851 1409.035676 941.8852497 740.3344534 1644.520124 740.5451095 1.640654271 1.477408171 1.598048262 2.037292668 1.59597685 1.90270067 1.271880994 0.999715539 2.220688656 1 9.532443808 -7.772152786 24.98830054 1.373047561 1.70295313 0.179331483 0.351589851 390.9344616 911819.6415 0.141654759 0.096601898 1.69E-08 7.772152786 0.329905569 IGRPMVAS(ph)PNQR ddPTM_K562_Paclitaxel_30min_R1 1 IGRPMVASPNQR 12 1 Q8IWZ3-6;H7C0V5 Q8IWZ3-6 ANKHD1;ANKHD1-EIF4EBP3 Ankyrin repeat and KH domain-containing protein 1 1 IGRPMVAS(1)PNQR 75.02 0.030943 20531000 510.81 420.06 681.68 332.23 462.88 560.32 421.82 617.15 488.91 553.15 TRUE FALSE 517.962916 465.9235714 509.5814531 310.9222548 525.9320926 659.6848847 501.858143 564.7192554 535.87199 440.4177264 1.176071908 1.057912848 1.157041197 0.705971255 1.194166495 1.497861792 1.139504868 1.282235527 1.216735744 1 8.782728727 -6.981171932 24.99959303 1.25126577 1.025380193 0.245463526 0.167841917 308.2655817 409307.8643 0.05090684 0.057714725 1.04E-07 6.981171932 -0.225885576 IGRPSETGIIGIIDPECR ddPTM_K562_Paclitaxel_30min_R1 1 IGRPSETGIIGIIDPECR 18 1 Q16531;F5GWI0;F5GZY8;F5H2L3;F5GY55 Q16531 DDB1 DNA damage-binding protein 1 0 90.706 0.017914 5463500 1196.3 1053.4 1757.7 1370.2 1257.2 1318.5 1055.5 1661.2 1311.9 1704.4 FALSE TRUE 1213.051891 1168.413774 1313.946896 1282.321505 1428.451925 1552.317462 1255.775615 1520.070691 1437.913857 1357.042344 0.893893913 0.861000233 0.968243107 0.944938461 1.052621483 1.143897586 0.925376883 1.120135048 1.059593949 1 10.40625002 -6.360413107 1.375020523 1.05467603 0.881734149 0.533944842 0.061651891 0.333737352 1.239768217 0.020881245 0.044809445 4.36E-07 6.360413107 -0.172941881 IHAESLLLDS(ph)PAVAK ddPTM_K562_Paclitaxel_30min_R1 2 IHAESLLLDSPAVAK 15 0 Q9H4L5-5;Q9H4L5;Q9H4L5-6;Q9H4L5-2 Q9H4L5-5;Q9H4L5-6 OSBPL3 Oxysterol-binding protein-related protein 3 1 IHAESLLLDS(1)PAVAK;IHAESLLLDS(1)PAVAK 166.77 1.93E-05 24916000 11343.2 10381.9 18448.9 12252.7 9918 8278.3 8908.4 12588.9 12262.8 15424.7 TRUE FALSE 11502.0398 11515.43095 13791.24702 11466.86666 11268.99951 9746.340272 10598.7224 11519.39437 13440.69673 12281.13767 0.936561425 0.937651809 1.122961682 0.933697428 0.917585961 0.793602395 0.86300819 0.937974532 1.094417886 1 13.58415659 -4.378932345 15.9677502 0.947746276 0.952918779 0 0.093441871 0 0 0.022791508 0 4.18E-05 4.378932345 0.005172503 IHFS(ph)PSEPK ddPTM_K562_Paclitaxel_30min_R1 1 IHFSPSEPK 9 0 Q8IZT6-2;Q8IZT6 Q8IZT6-2 ASPM Abnormal spindle-like microcephaly-associated protein 1 IHFS(0.999)PS(0.001)EPK 91.549 0.011578 6192600 7969.4 6415.6 12313 8081.1 7061.6 6665 5650.8 8036.3 6784.4 9299.5 TRUE FALSE 8080.996188 7116.076904 9204.430865 7562.814416 8023.509474 7846.944169 6723.009801 7353.566154 7436.071934 7404.256795 1.091398693 0.96107916 1.243126909 1.021414387 1.083634684 1.059788225 0.907992522 0.993153852 1.004296871 1 12.85413922 -7.606757244 7.810651854 0.976066867 1.0785605 0.326048794 0.07116735 0.293322593 23.70373417 0.02656563 0.020528438 2.47E-08 7.606757244 0.102493633 IHIDPEIQDGS(ph)PTTSR ddPTM_K562_Paclitaxel_30min_R1 2 IHIDPEIQDGSPTTSR 16 0 C9J542;P50479-2;P50479 C9J542 PDLIM4 PDZ and LIM domain protein 4 1 IHIDPEIQDGS(0.599)PT(0.051)T(0.015)S(0.336)R;IHIDPEIQDGS(0.984)PT(0.01)T(0.003)S(0.003)R 140.8 1.13E-08 77259000 6835.7 7358.8 9930 7880.3 6853.9 6536.6 6964.7 8111.7 5833.5 9526.2 TRUE FALSE 6931.42089 8162.25867 7423.048687 7374.892829 7787.517217 7695.774232 8286.215467 7422.560453 6393.83374 7584.755211 0.913862174 1.076140026 0.97868006 0.972331028 1.026732835 1.014637126 1.092482913 0.97861569 0.842984851 1 12.8888869 -8.53281717 24.8164904 0.917928319 1.013007794 0.259603201 0.059588703 235.2938805 587519.2204 0.037667796 0.014272774 2.93E-09 8.53281717 0.095079474 IHIDPEIQDGSPTTS(ph)R ddPTM_K562_Paclitaxel_30min_R1 4 IHIDPEIQDGSPTTSR 16 0 C9J542;P50479-2;P50479 C9J542 PDLIM4 PDZ and LIM domain protein 4 1 IHIDPEIQDGS(0.061)PT(0.003)T(0.025)S(0.911)R;IHIDPEIQDGS(0.199)PT(0.028)T(0.028)S(0.746)R;IHIDPEIQDGS(0.133)PT(0.063)T(0.024)S(0.78)R;IHIDPEIQDGS(0.296)PT(0.096)T(0.032)S(0.576)R 162.42 1.19E-07 1002660000 9519.6 9926.8 13859.3 11082.8 9610.6 9145.9 9418.6 12239.2 7228.6 13045.3 TRUE FALSE 9652.90377 11010.64159 10360.34831 10371.99881 10919.72643 10767.79695 11205.73018 11199.40357 7922.939328 10386.6607 0.929355839 1.060075217 0.997466713 0.998588393 1.051322147 1.036694782 1.078857826 1.078248716 0.762799475 1 13.34244428 -8.7434848 24.99749338 0.881399614 1.030494474 0.428046789 0.068144474 180.0037936 250614.6632 0.0432965 0.016289997 1.81E-09 8.7434848 0.14909486 IHLGS(ph)SPK ddPTM_K562_Paclitaxel_30min_R1 1 IHLGSSPK 8 0 Q9H410-4;Q9H410;Q5JW53 Q9H410-4 DSN1 Kinetochore-associated protein DSN1 homolog 1 IHLGS(0.948)S(0.052)PK 117.01 0.0038777 45351000 5175.2 4375.2 9351.6 5846.1 4263.1 3944.3 3643.4 5487.4 4853.8 6549.8 TRUE FALSE 5247.668767 4852.899132 6990.672921 5471.157312 4843.806395 4643.766224 4334.71613 5021.211119 5320.029177 5214.947165 1.00627458 0.930574938 1.340506951 1.04912996 0.928831346 0.890472344 0.83120998 0.962849854 1.020150159 1 12.34843692 -6.690776578 4.769685086 0.929073342 1.093361986 0.28844045 0.110111998 0.26210839 11.2431667 0.034610219 0.044483956 2.04E-07 6.690776578 0.164288644 IHLGSS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 IHLGSSPK 8 0 Q9H410-4;Q9H410;Q5JW53 Q9H410-4 DSN1 Kinetochore-associated protein DSN1 homolog 1 IHLGS(0.025)S(0.975)PK 114.97 0.0043808 37198000 6984 5768.2 11592 8091.2 5424.6 5293.3 5197.1 7276.9 6483 8563.9 TRUE FALSE 7081.797547 6397.991583 8665.456232 7572.266647 6163.522359 6231.992433 6183.222594 6658.681924 7105.721117 6818.572479 1.038604131 0.938318336 1.270860764 1.110535478 0.903931487 0.913973189 0.906820689 0.976550729 1.042112721 1 12.73525402 -6.754250253 24.9993241 0.95137555 1.091723969 0.355928599 0.086985781 192.3068392 668719.7413 0.027403483 0.034634852 1.76E-07 6.754250253 0.14034842 IHLPLNYPPGS(ph)PDLGR ddPTM_K562_Paclitaxel_30min_R1 1 IHLPLNYPPGSPDLGR 16 0 Q08174;Q08174-2 Q08174 PCDH1 Protocadherin-1 1 IHLPLNY(0.002)PPGS(0.998)PDLGR 101.38 0.0035936 0 1859.4 1932.8 2190.3 1834.6 1896.9 1475.6 1473.6 1744.4 1845.9 2324.3 TRUE FALSE 1885.437337 2143.82964 1637.331676 1716.936967 2155.289895 1737.276942 1753.207907 1596.202332 2023.206943 1850.606384 1.018821373 1.158447122 0.884754149 0.927769936 1.164639825 0.938760914 0.947369426 0.862529355 1.093267029 1 10.85378236 IHQDSES(ph)GDELSSSSTEQIR ddPTM_K562_Paclitaxel_30min_R1 3 IHQDSESGDELSSSSTEQIR 20 0 Q1RLN5;Q8IWW6-3;Q8IWW6-2;Q8IWW6-4;Q8IWW6 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 1 IHQDSES(1)GDELSSSSTEQIR;IHQDSES(1)GDELSSSSTEQIR;IHQDS(0.006)ES(0.514)GDELS(0.272)S(0.111)S(0.032)S(0.032)T(0.032)EQIR 146 4.40E-13 49231600 4298.74 4345.87 5809.33 4650.75 3897.59 3814.87 3239.76 3916.59 3063.06 3745.16 TRUE FALSE 4358.935623 4820.366783 4342.692793 4352.471711 4428.507745 4491.383631 3854.487547 3583.851233 3357.280599 2981.894336 1.461800832 1.616545135 1.456353681 1.459633112 1.485132351 1.506218237 1.292630493 1.201870633 1.125888519 1 11.54201342 -8.298124211 0.93646206 1.013446066 1.512782809 0.923655714 0.051423528 0.139753172 0.220566279 0.046566284 0.018998893 5.03E-09 8.298124211 0.499336743 IHRAS(ph)DPGLPAEEPK ddPTM_K562_Paclitaxel_30min_R1 1 IHRASDPGLPAEEPK 15 1 P27708;F8VPD4 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 IHRAS(1)DPGLPAEEPK 71.969 0.029887 81929000 2549.6 2400.9 5124.3 3441.4 2298.4 1886.5 2234.6 3486.6 1915.2 3893.8 TRUE FALSE 2585.302266 2663.038381 3830.607088 3220.684007 2611.480992 2221.044287 2658.603685 3190.391567 2099.163517 3100.241423 0.83390353 0.858977743 1.235583481 1.038849421 0.842347623 0.716410106 0.857547308 1.029078427 0.677096791 1 11.59816485 -6.769158791 24.89480864 0.848523804 0.999750271 0.179713432 0.143865887 282.561671 911248.5138 0.045898834 0.053019246 1.70E-07 6.769158791 0.151226467 IHRAS(ph)DPGLPAEEPKEK ddPTM_K562_Paclitaxel_30min_R1 3 IHRASDPGLPAEEPKEK 17 2 P27708;F8VPD4 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 IHRAS(1)DPGLPAEEPKEK;IHRAS(1)DPGLPAEEPKEK;IHRAS(1)DPGLPAEEPKEK 76.015 0.010555 841440000 13631 9023.7 30017.6 13939.9 9900.4 7601.6 8454.6 13101.4 13347.1 19818.3 TRUE FALSE 13821.87606 10008.93808 22439.28563 13045.85721 11249.0021 8949.637028 10058.81621 11988.35429 14629.14859 15779.31958 0.8759488 0.634307331 1.422069279 0.826769313 0.712895257 0.567175092 0.637468312 0.759751029 0.927108962 1 13.94574738 -6.513357512 24.80974335 0.741693369 0.973343489 0.152292543 0.216647695 705.4173644 1838127.651 0.063441103 0.086890187 3.07E-07 6.513357512 0.23165012 IHS(ph)PIIR ddPTM_K562_Paclitaxel_30min_R1 4 IHSPIIR 7 0 O60885 O60885 BRD4 Bromodomain-containing protein 4 1 IHS(1)PIIR;IHS(1)PIIR;IHS(1)PIIR;IHS(1)PIIR 88.37 0.016405 77425000 3131.8 3242.87 4945.04 4039.47 3350.8 2983.35 3071.82 3464.28 2730.27 3976.93 TRUE FALSE 3175.654862 3596.937513 3696.603493 3780.396474 3807.23569 3512.405234 3654.681809 3169.967791 2992.524633 3166.429483 1.002913496 1.135960088 1.167435912 1.193898836 1.202375013 1.109263684 1.154196494 1.001117444 0.945078565 1 11.62864124 -8.3235118 4.287143808 0.973496363 1.142873358 0.635184543 0.054224041 0.145654443 5.419756275 0.032848548 0.015143505 4.75E-09 8.3235118 0.169376994 IIAPPERK ddPTM_K562_Paclitaxel_30min_R1 2 IIAPPERK 8 1 P60709;P63261;P63267;P68133;P62736;P68032;P63267-2;A6NL76;A0A2R8YFE2;Q562R1 P60709 ACTB;ACTG1;ACTG2;ACTA1;ACTA2;ACTC1;ACTBL2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;Actin, aortic smooth muscle;Actin, alpha cardiac muscle 1;Beta-actin-like protein 2" 0 ; 86.833 0.030867 27896000 3749.4 3292.4 6759.3 4618.3 3376.3 3489.1 2761.7 3848.1 3914.1 4889.5 FALSE TRUE 3801.903168 3651.875366 5052.831117 4322.102909 3836.209221 4107.842896 3285.718158 3521.179886 4290.066794 3893.017216 0.976595519 0.938057852 1.297921596 1.110219315 0.985407721 1.055182309 0.844002987 0.904486081 1.101990193 1 11.92667301 -7.124271295 2.078225093 0.962138087 1.081606587 0.13764444 0.112909621 0.614342556 5.235573314 0.045271671 0.045649142 7.51E-08 7.124271295 0.1194685 IIEDGDGAGAET(ph)PVIENR ddPTM_K562_Paclitaxel_30min_R1 4 IIEDGDGAGAETPVIENR 18 0 A0A5H1ZRS1;Q15154-5 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 IIEDGDGAGAET(1)PVIENR;IIEDGDGAGAET(1)PVIENR;IIEDGDGAGAET(1)PVIENR;IIEDGDGAGAET(1)PVIENR 235.79 2.71E-42 57094000 3808.8 3200.45 3692.63 3369.29 2901.82 2953.42 2757.78 4074.22 4049.1 3961.44 TRUE FALSE 3862.134951 3549.885954 2760.379887 3153.19882 3297.097012 3477.167569 3281.054358 3728.089581 4438.034147 3154.096354 1.224482235 1.125484309 0.875172974 0.999715439 1.045338076 1.102429089 1.040251784 1.181983415 1.407069934 1 11.62301102 -8.354222528 4.549826924 1.229015529 1.053392729 0.194338019 0.125124363 0.314837332 11.12130448 0.072696552 0.033206991 4.42E-09 8.354222528 -0.175622799 IIEQLS(ph)PQAATSR ddPTM_K562_Paclitaxel_30min_R1 2 IIEQLSPQAATSR 13 0 D6R9X7;P0DP91;Q03468 D6R9X7 ERCC6 DNA excision repair protein ERCC-6 1 IIEQLS(1)PQAATSR;IIEQLS(0.991)PQAAT(0.009)S(0.001)R 162.64 0.00016305 61250000 2496.8 2318 3176.8 2703.1 2274.2 2360.7 2323.6 2830 2589.6 2689.5 TRUE FALSE 2531.762903 2571.087079 2374.77755 2529.735265 2583.984543 2779.336999 2764.49097 2589.573836 2838.342651 2141.378424 1.182305227 1.200669181 1.108994806 1.181358342 1.206692154 1.297919587 1.290986656 1.209302292 1.325474572 1 11.06432406 -6.88413801 3.372727643 1.24264999 1.165911447 0.0646234 0.087943359 0.478168221 10.68688878 0.026839854 0.031082283 1.31E-07 6.88413801 -0.076738543 IIET(ph)MS(ph)SSK ddPTM_K562_Paclitaxel_30min_R1 1 IIETMSSSK 9 0 Q96Q89-5;Q96Q89-3;Q96Q89;Q96Q89-2 Q96Q89-5 KIF20B Kinesin-like protein KIF20B 2 IIET(0.997)MS(0.999)S(0.004)SK 126.31 0.0028818 63176000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 IIFEDDR ddPTM_K562_Paclitaxel_30min_R1 4 IIFEDDR 7 0 D6RC06;D6REP8;D6RE99;D6RD60;P49773 D6RC06 HINT1 Histidine triad nucleotide-binding protein 1 0 ;;; 133.47 0.00043139 156958000 19233.3 19493.9 24856.6 21838.6 18831.4 17537.5 18879.5 21349.3 12921.7 22602.9 FALSE TRUE 19502.62554 21622.30993 18581.24391 20437.96994 21396.5555 20647.52939 22461.78657 19535.54371 14162.88702 17996.41657 1.083694938 1.20147863 1.032496877 1.135668863 1.18893422 1.147313372 1.248125507 1.085524089 0.786983729 1 14.13542205 -8.608233319 6.096989274 0.898141681 1.148233986 0.645976016 0.074283069 0.120440268 6.780962685 0.049661235 0.018156783 2.46E-09 8.608233319 0.250092305 IIGVHQEDELLECLS(ph)PATSR ddPTM_K562_Paclitaxel_30min_R1 2 IIGVHQEDELLECLSPATSR 20 0 A0A669KBL1;Q93009-3;Q93009;H3BND8 A0A669KBL1 USP7 Ubiquitin carboxyl-terminal hydrolase 7;Ubiquitin carboxyl-terminal hydrolase 1 IIGVHQEDELLECLS(0.95)PAT(0.041)S(0.009)R;IIGVHQEDELLECLS(0.715)PAT(0.079)S(0.207)R 129.26 1.77E-07 13058900 2391.71 2436.66 2921.26 2823.33 2492.46 3048.6 2740.45 2993.37 2230.08 3735 TRUE FALSE 2425.201319 2702.702779 2183.751783 2642.254251 2831.97525 3589.226406 3260.436081 2739.064534 2444.289148 2973.80495 0.815521314 0.9088366 0.734329191 0.888509601 0.952306993 1.206947485 1.096385317 0.92106395 0.821939969 1 11.53809431 -6.750778504 3.163158867 1.014557705 0.828258805 0.38312788 0.103867607 0.277053735 5.738213431 0.035933531 0.044995527 1.78E-07 6.750778504 -0.1862989 IIIEELSLVAAS(ph)PTLSPR ddPTM_K562_Paclitaxel_30min_R1 1 IIIEELSLVAASPTLSPR 18 0 Q16513-4;Q16513-3;Q16513-2;Q16513;B1AL79;H0Y5V5 Q16513-4 PKN2 Serine/threonine-protein kinase N2 1 IIIEELS(0.02)LVAAS(0.789)PT(0.095)LS(0.095)PR 76.151 0.015138 65697000 729.69 494.92 712.38 733.78 680.19 495.16 767.53 811.23 854.75 911.58 TRUE FALSE 739.9079113 548.9570393 532.5308584 686.7186351 772.8433937 582.9696736 913.1648107 742.310948 936.8525566 725.7994956 1.019438448 0.756348058 0.733716214 0.946154743 1.064816659 0.803210359 1.258150242 1.02274933 1.290787004 1 9.503427244 -7.364076721 0.967988459 1.143230696 0.845524367 0.370438293 0.14350233 0.551749844 1.086866867 0.086250469 0.071192007 4.32E-08 7.364076721 -0.297706329 IIITEPS(ph)D ddPTM_K562_Paclitaxel_30min_R1 1 IIITEPSD 8 0 Q9NSI8;A0A2R8Y4K8;Q9NSI8-3;S6FRS6;Q9NSI8-2 Q9NSI8 SAMSN1 SAM domain-containing protein SAMSN-1 1 IIITEPS(1)D 83.265 0.026939 9643900 6280.9 5259.8 7001.3 5962.8 4830.4 5411 5497.7 5814 6077.9 6274.9 TRUE FALSE 6368.851978 5834.082752 5233.735224 5580.372697 5488.382259 6370.564876 6540.859875 5320.06441 6661.709452 4996.071936 1.274771873 1.167733937 1.047570029 1.116952031 1.098539479 1.275114722 1.3092005 1.064849441 1.333389418 1 12.28657853 -7.245804174 24.81475594 1.207607017 1.136053227 0.052906852 0.111367898 1936.561339 3073535.492 0.035852252 0.035734754 5.68E-08 7.245804174 -0.071553791 IILDLISES(ph)PIKGR ddPTM_K562_Paclitaxel_30min_R1 2 IILDLISESPIKGR 14 1 Q5T6W2;P61978-3;P61978;P61978-2 Q5T6W2 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 IILDLIS(0.039)ES(0.961)PIKGR;IILDLIS(0.025)ES(0.975)PIKGR 246.66 5.80E-58 468630000 4826.8 4171.6 7106.5 5676.7 3915 3767.2 3699.5 5400.8 4749 6500.6 TRUE FALSE 4894.390092 4627.069395 5312.376183 5312.62187 4448.289281 4435.260026 4401.460812 4941.968329 5205.162669 5175.774152 0.945634401 0.893985955 1.02639258 1.026440048 0.85944424 0.856926886 0.850396614 0.954826889 1.005678091 1 12.33755895 -8.601870883 4.614268552 1.000667187 0.923292978 0.215725853 0.060453142 0.382714677 14.80632956 0.050034861 0.017576151 2.50E-09 8.601870883 -0.077374208 IILNSHS(ph)PAGSAAISQQDFHPK ddPTM_K562_Paclitaxel_30min_R1 2 IILNSHSPAGSAAISQQDFHPK 22 0 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 IILNS(0.077)HS(0.923)PAGSAAISQQDFHPK;IILNS(0.203)HS(0.796)PAGS(0.002)AAISQQDFHPK 139 1.60E-16 96972000 4011.8 3440.2 6157.9 4383 3095.2 3068.3 2785.7 4631.2 3741.2 4556.2 TRUE FALSE 4067.977577 3815.81267 4603.261985 4101.893998 3516.818642 3612.419924 3314.272033 4237.750653 4100.558976 3627.643939 1.121382816 1.051870783 1.268939858 1.130732251 0.969449786 0.995803333 0.913615583 1.168182634 1.130364238 1 11.82481714 -6.646889085 7.197887263 1.030796783 1.147706369 0.298833369 0.085490886 0.311497731 18.43387305 0.027112048 0.035025913 2.25E-07 6.646889085 0.116909586 IIPELVGS(ph)PTQSTSSR ddPTM_K562_Paclitaxel_30min_R1 3 IIPELVGSPTQSTSSR 16 0 H7C409;Q9NSI6-3;Q9NSI6-2;Q9NSI6 H7C409 BRWD1 Bromodomain and WD repeat-containing protein 1 1 IIPELVGS(0.567)PT(0.013)QS(0.002)T(0.002)S(0.008)S(0.409)R;IIPELVGS(0.417)PT(0.161)QSTS(0.004)S(0.417)R;IIPELVGS(0.495)PT(0.495)QS(0.001)TSS(0.009)R 175.27 3.17E-09 163897000 4711.4 4569.4 5555.9 5095 4120.3 3773 4091.2 4552 4352.6 4898.5 TRUE FALSE 4777.374136 5068.302545 4153.24433 4768.229504 4681.554617 4442.088574 4867.483843 4165.279187 4770.686678 3900.183011 1.224910247 1.299503775 1.064884473 1.22256558 1.200342293 1.138943624 1.248014216 1.067970189 1.223195595 1 11.92932611 -14.99999999 0.164859465 0.294403556 1.232609341 0.397892296 0.070990708 132.1237329 1.22973121 30.46559732 0.2674069 1.00E-15 14.99999999 0.938205785 IIPELVGSPTQSTSS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 IIPELVGSPTQSTSSR 16 0 H7C409;Q9NSI6-3;Q9NSI6-2;Q9NSI6 H7C409 BRWD1 Bromodomain and WD repeat-containing protein 1 1 IIPELVGS(0.309)PT(0.021)QS(0.002)T(0.001)SS(0.666)R 97.904 0.0044318 10680000 730.02 566.87 751.88 934.01 691.92 734.74 499.85 783.4 844.78 837.73 TRUE FALSE 740.2425323 628.7627836 562.0585949 874.1067791 786.1712183 865.0358227 594.6939281 716.8452802 925.9248936 667.0001662 1.109808618 0.942672604 0.842666349 1.31050459 1.1786672 1.296904958 0.891594873 1.074730287 1.388192898 1 9.381543311 -6.256251129 24.99702368 1.160986739 0.962811539 0.259020778 0.153343434 623.242664 3002779.17 0.042606406 0.071051833 5.54E-07 6.256251129 -0.1981752 IIPGFMCQGGDFTR ddPTM_K562_Paclitaxel_30min_R1 2 IIPGFMCQGGDFTR 14 0 F8WE65;C9J5S7;P0DN26;A0A0H2UH34;A0A0B4J2A2;A0A075B767;A0A075B759;Q9Y536;F5H284;P62937 F8WE65 PPIA;PPIAL4C;PPIAL4E;PPIAL4A;PPIAL4D "Peptidyl-prolyl cis-trans isomerase;Peptidyl-prolyl cis-trans isomerase A-like 4A/B/C;Peptidyl-prolyl cis-trans isomerase A-like 4D;Peptidyl-prolyl cis-trans isomerase A;Peptidyl-prolyl cis-trans isomerase A, N-terminally processed" 0 ; 243.91 2.72E-46 223120000 1467.15 1338.7 1816.14 1707.58 1391.77 1433.62 1669.16 1950.23 1261.57 1842.61 FALSE TRUE 1487.694627 1484.863793 1357.632995 1598.063462 1581.352637 1687.852378 1985.874396 1784.545789 1382.749435 1467.085071 1.014047962 1.012118399 0.925394868 1.08927798 1.077887485 1.150480236 1.353619116 1.216388759 0.94251483 1 10.51873681 -6.707988061 1.841738489 1.15526382 0.989233223 0.215688541 0.110845588 0.460689449 3.219536193 0.03954322 0.054299305 1.96E-07 6.707988061 -0.166030596 IIS(ph)SNIVSGTT(ph)TKIT(ph)T(ph)IPMT(ph)SK ddPTM_K562_Paclitaxel_30min_R1 1 IISSNIVSGTTTKITTIPMTSK 22 1 E9PMC9;Q7Z589-2;Q7Z589-6;Q7Z589;Q7Z589-5;Q7Z589-4;Q7Z589-7 E9PMC9 C11orf30;EMSY Protein EMSY 5 IIS(0.732)S(0.264)NIVS(0.142)GT(0.142)T(0.69)T(0.031)KIT(0.798)T(0.885)IPMT(0.885)S(0.432)K 64.275 0.0096845 0 640.02 568.92 938.94 840.7 533.97 613.03 495.04 745.71 836.5 899.73 TRUE FALSE 648.9822546 631.0366096 701.8929843 786.7812648 606.7057542 721.7422631 588.9712557 682.3572809 916.8495626 716.3645321 0.905938563 0.880887567 0.979798626 1.098297347 0.846923217 1.007506976 0.822166968 0.952528008 1.27986454 1 9.4845501 -8.651615726 8.830668695 1.138713179 0.936313994 0.404760566 0.098707651 0.233834848 17.05260359 0.064407199 0.024150652 2.23E-09 8.651615726 -0.202399185 IISPGSS(ph)TPSST(ph)RSPPPGRDESYPR ddPTM_K562_Paclitaxel_30min_R1 1 IISPGSSTPSSTRSPPPGRDESYPR 25 2 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 2 IIS(0.013)PGS(0.126)S(0.417)T(0.417)PS(0.13)S(0.13)T(0.383)RS(0.383)PPPGRDESYPR 70.121 0.002118 17524000 1914.5 1612.6 1888 2041.2 1750.4 1395.4 1388.9 1860.7 2089.7 1730 TRUE FALSE 1941.308907 1788.669121 1411.35105 1910.286568 1988.834115 1642.854598 1652.436524 1702.621921 2290.425022 1377.42505 1.409375346 1.298560035 1.024630015 1.386853366 1.443878281 1.192699811 1.199656217 1.236090429 1.662830962 1 10.4277581 -12.12863434 2.713336746 0.320122675 1.304296808 0.246507192 0.164981483 11567945.57 20149551.88 52979242.67 0.041445566 7.44E-13 12.12863434 0.984174134 IISPGSSTPS(ph)STRSPPPGRDESYPR ddPTM_K562_Paclitaxel_30min_R1 1 IISPGSSTPSSTRSPPPGRDESYPR 25 2 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 IISPGS(0.001)S(0.001)T(0.013)PS(0.724)S(0.21)T(0.023)RS(0.023)PPPGRDES(0.003)Y(0.002)PR 61.361 0.0032223 107640000 704.97 695.82 1067.4 904.5 847.47 690.52 537.02 834.53 814.1 838.38 TRUE FALSE 714.841755 771.7919807 797.9216686 846.4894184 962.9097618 812.9740266 638.9167416 763.6314675 892.2979425 667.5176958 1.070895588 1.156212016 1.195356578 1.268115323 1.442523199 1.217906329 0.957153264 1.143986852 1.336740506 1 9.382662273 -7.554898392 24.97264665 1.116620541 1.233971205 0.159582415 0.129237328 395.1963081 308216.8005 0.05226099 0.040481462 2.79E-08 7.554898392 0.117350664 IISPGSSTPSSTRS(ph)PPPGRDESYPR ddPTM_K562_Paclitaxel_30min_R1 1 IISPGSSTPSSTRSPPPGRDESYPR 25 2 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 IIS(0.016)PGS(0.074)S(0.074)T(0.074)PS(0.087)S(0.087)T(0.087)RS(0.501)PPPGRDES(0.001)Y(0.001)PR 79.467 0.0013091 54538000 1047.7 1114.9 1202 1081.4 818.67 1154.1 968.43 1202.3 1064.9 1119.6 TRUE FALSE 1062.371032 1236.628552 898.5402339 1012.043844 930.1867142 1358.763431 1152.184537 1100.15711 1167.188403 891.4249054 1.191767277 1.387249273 1.007981972 1.135310263 1.043482977 1.524260117 1.29252002 1.23415568 1.30935135 1 9.799969459 -7.20198898 24.99999826 1.287974948 1.157106588 0.127847079 0.15229091 506.0781794 212814.8986 0.049852872 0.049852854 6.28E-08 7.20198898 -0.13086836 IKEEEPDPEEWQLS(ph)GDSTLNTNDLTHLR ddPTM_K562_Paclitaxel_30min_R1 1 IKEEEPDPEEWQLSGDSTLNTNDLTHLR 28 1 A0A494C1G8;A0A494C0Z6;H0Y6K5;A0A494C070;H0Y7L6;Q02447-4;Q02447-3;Q02447-5;Q02447-6;Q02447-2;Q02447 A0A494C1G8 SP3 Transcription factor Sp3 1 IKEEEPDPEEWQLS(0.92)GDS(0.066)T(0.014)LNTNDLTHLR 81.315 3.39E-06 14310000 1498.4 1111.6 2592.1 1596.8 1189.8 830.8 804.16 1542.2 1154.5 1681.4 TRUE FALSE 1519.382223 1232.968247 1937.692296 1494.388395 1351.870903 978.130715 956.745162 1411.180484 1265.394883 1338.729757 1.134943191 0.920998611 1.44741109 1.116273383 1.009816131 0.7306409 0.71466639 1.054119008 0.945220555 1 10.38664904 -6.907080752 3.431804152 0.880526411 1.15945531 0.390925671 0.155616242 0.255448195 5.947975934 0.052797718 0.060472941 1.24E-07 6.907080752 0.2789289 IKGS(ph)SPGIQDTLEAEDGAFETDEAPEDR ddPTM_K562_Paclitaxel_30min_R1 4 IKGSSPGIQDTLEAEDGAFETDEAPEDR 28 1 Q9UNX4 Q9UNX4 WDR3 WD repeat-containing protein 3 1 IKGS(0.5)S(0.5)PGIQDTLEAEDGAFETDEAPEDR;IKGS(0.476)S(0.476)PGIQDT(0.049)LEAEDGAFETDEAPEDR;IKGS(0.498)S(0.498)PGIQDT(0.004)LEAEDGAFETDEAPEDR;IKGS(0.453)S(0.453)PGIQDT(0.095)LEAEDGAFETDEAPEDR 128.4 3.90E-15 207551000 4962.85 4286.32 9049.3 6022.17 4213.4 3867.91 3682.51 6286.7 5620.76 7688.6 TRUE FALSE 5032.345212 4754.314913 6764.692295 5635.93497 4787.336413 4553.82953 4381.247049 5752.605595 6160.659112 6121.6591 0.822055774 0.776638299 1.105042307 0.920654822 0.782032507 0.743888128 0.715696019 0.939713483 1.006370824 1 12.57970699 -8.508687374 18.40912139 0.993139598 0.842202973 0.295550965 0.104621354 29.44057933 38201.63782 0.067772759 0.030241634 3.10E-09 8.508687374 -0.150936625 IKNENTEGS(ph)PQEDGVELEGLK ddPTM_K562_Paclitaxel_30min_R1 4 IKNENTEGSPQEDGVELEGLK 21 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 IKNENTEGS(1)PQEDGVELEGLK;IKNENTEGS(1)PQEDGVELEGLK;IKNENT(0.011)EGS(0.989)PQEDGVELEGLK;IKNENT(0.029)EGS(0.971)PQEDGVELEGLK 142.14 1.53E-16 319325000 12066.7 8792.1 29268.8 14276.4 9195.3 7869.64 7318.79 12905.7 8287.86 19056.6 TRUE FALSE 12235.67103 9752.051211 21879.52945 13360.7756 10447.85554 9265.210159 8707.492196 11809.28023 9083.945984 15172.85446 0.806418533 0.642730162 1.442018014 0.880570999 0.688588661 0.610643843 0.573886227 0.778316319 0.598697233 1 13.8892049 -6.68246425 4.733063463 0.685506674 0.964755221 0.211819867 0.22173465 0.303923664 12.35862348 0.06742985 0.086895218 2.08E-07 6.68246425 0.279248547 IKNENTEGS(ph)PQEDGVELEGLKQR ddPTM_K562_Paclitaxel_30min_R1 1 IKNENTEGSPQEDGVELEGLKQR 23 2 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 IKNENT(0.003)EGS(0.997)PQEDGVELEGLKQR 113.33 5.70E-05 92509000 1463.6 1075.3 3385.3 1699.7 972.69 881.71 591.8 1367.2 1883.4 2023.5 TRUE FALSE 1484.094916 1192.70489 2530.639146 1590.68885 1105.186846 1038.068889 704.0909606 1251.047826 2064.308985 1611.109589 0.921163232 0.740300286 1.570743023 0.987325046 0.68597869 0.644319229 0.437022388 0.776513177 1.281296443 1 10.65383892 -6.619317422 5.824294381 0.768559402 1.080197778 0.15133787 0.288307214 0.359476092 17.94645987 0.089375888 0.115931917 2.40E-07 6.619317422 0.311638376 IKS(ph)GEAIIANANY(ph)HDT(ph)S(ph)PYR ddPTM_K562_Paclitaxel_30min_R1 1 IKSGEAIIANANYHDTSPYR 20 1 E7EUW2;E7ESV6;E7ETE3;E7EVD6;E7EW95;E9PBG4;E7EN28;E7EX52;E7EUP0;E7ENK1;E7ES20;E7EMR3;Q9HAR2;Q9HAR2-4;Q9HAR2-2;Q9HAR2-3 E7EUW2 ADGRL3;LPHN3 Latrophilin-3 4 IKS(1)GEAIIANANY(0.746)HDT(0.762)S(0.746)PY(0.746)R 51.568 0.023561 108140000 2058.8 1738.3 1825.3 2332.4 1757.6 1848.4 1608.1 2064.4 1334.8 1932.1 TRUE FALSE 2087.629552 1928.093473 1364.48044 2182.810303 1997.014876 2176.187787 1913.22858 1889.016334 1463.013504 1538.336959 1.357069099 1.25336225 0.886984111 1.418941598 1.29816479 1.414636614 1.243699287 1.227960053 0.951035789 1 10.58715583 -8.718883974 5.25564829 0.97338779 1.262525765 0.397111386 0.141806056 0.187756457 11.79738005 0.112094133 0.037655635 1.91E-09 8.718883974 0.289137975 IKTEPS(ph)SPLSDPSDIIR ddPTM_K562_Paclitaxel_30min_R1 1 IKTEPSSPLSDPSDIIR 17 1 Q9ULJ3;Q9ULJ3-2 Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 IKTEPS(0.5)S(0.5)PLSDPSDIIR 112.82 0.00057418 0 303.34 310.44 884.86 623.76 230.56 501.92 294.81 722.41 574.64 620.51 TRUE FALSE 307.5876959 344.334889 661.4661492 583.7548254 261.9661754 590.9284647 350.7486585 661.0367614 629.8367396 494.0497214 0.622584494 0.696964038 1.338865544 1.181571004 0.530242532 1.19609108 0.709946071 1.337996426 1.274844843 1 8.948512432 -8.272418224 24.91659935 1.229815485 0.914328016 0.212977496 0.26818694 1144.688553 2597866.421 0.14697444 0.071662138 5.34E-09 8.272418224 -0.315487469 IKTEPSSPLSDPS(ph)DIIR ddPTM_K562_Paclitaxel_30min_R1 1 IKTEPSSPLSDPSDIIR 17 1 Q9ULJ3;Q9ULJ3-2 Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 IKTEPS(0.188)S(0.188)PLS(0.004)DPS(0.62)DIIR 124.25 1.05E-08 0 1056.6 1026.1 1910.6 1184.5 809.76 949.34 806.7 1000.3 1228 1379.7 TRUE FALSE 1071.39566 1138.133068 1428.2454 1108.531472 920.0630213 1117.69212 959.7671137 915.3182713 1345.954887 1098.516383 0.975311499 1.036063809 1.300158489 1.009116923 0.837550569 1.017456032 0.873693947 0.833231334 1.225247896 1 10.10134067 -6.513733952 24.98827822 0.951481272 1.106661722 0.178080741 0.132040511 660.5240969 1804893.197 0.037820561 0.051640199 3.06E-07 6.513733952 0.15518045 IKTLHCEGTEINS(ph)DDEQESKEVEETATAK ddPTM_K562_Paclitaxel_30min_R1 1 IKTLHCEGTEINSDDEQESKEVEETATAK 29 2 Q9BPX3;H0Y9Z8 Q9BPX3 NCAPG Condensin complex subunit 3 1 IKTLHCEGT(0.008)EINS(0.945)DDEQES(0.02)KEVEET(0.024)AT(0.003)AK 51.114 0.0056735 8930600 778.94 552.4 2074.9 677.05 513.4 440.8 431.32 732.67 886.28 1064.7 TRUE FALSE 789.8475632 612.7129001 1551.065833 633.6270434 583.3337719 518.9696909 513.1607184 670.4251103 971.411154 847.7135556 0.931738744 0.722782945 1.82970512 0.747454183 0.68812604 0.612199354 0.605346836 0.790862793 1.145919099 1 9.727433047 ILDSVGIEADDDRLNK ddPTM_K562_Paclitaxel_30min_R1 1 ILDSVGIEADDDRLNK 16 1 P05387 P05387 RPLP2 60S acidic ribosomal protein P2 0 123.63 0.00072084 17066000 1683.5 1354.2 2830 1713.9 1263 1313.1 1315.9 1790.2 1495.2 2287.2 FALSE TRUE 1707.074194 1502.056136 2115.531499 1603.978125 1435.041983 1545.959848 1565.585156 1638.111336 1638.820641 1821.067385 0.93740309 0.824821832 1.161698637 0.880790101 0.78802245 0.848930611 0.859707427 0.89953362 0.899923119 1 10.83056859 -6.484240502 24.9998572 0.871151518 0.969923433 0.167222 0.092010996 898.9301267 581628.6489 0.025614581 0.03798366 3.28E-07 6.484240502 0.098771915 ILEGPQQSLSGSPLQPIPAS(ph)PPPQIPPGLRPR ddPTM_K562_Paclitaxel_30min_R1 1 ILEGPQQSLSGSPLQPIPASPPPQIPPGLRPR 32 1 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 ILEGPQQSLSGSPLQPIPAS(1)PPPQIPPGLRPR 104.39 1.28E-12 21555000 280.33 414.94 376.63 366.03 309.06 241.01 283.08 572.32 342.09 504.14 TRUE FALSE 284.2554849 460.2445524 281.5450984 342.5544741 351.1592044 283.7497396 336.7929522 523.6978437 374.949273 401.3959913 0.708167224 1.146609738 0.701414824 0.853407811 0.874844822 0.706907258 0.8390541 1.304691265 0.934113148 1 8.648882398 -8.187422169 15.1898638 1.089538874 0.837449189 0.358425058 0.150983797 3.186049979 652.6811091 0.067494463 0.038966982 6.49E-09 8.187422169 -0.252089685 ILENSEDS(ph)SPECLF ddPTM_K562_Paclitaxel_30min_R1 2 ILENSEDSSPECLF 14 0 A0A087WSW7;F6XU50;A0A0B4J1V9;Q9NRZ9-6;Q9NRZ9-5;Q9NRZ9-3;Q9NRZ9-2;Q9NRZ9 A0A087WSW7 HELLS Lymphoid-specific helicase 1 ILENSEDS(0.961)S(0.039)PECLF;ILENS(0.003)EDS(0.964)S(0.034)PECLF 137.09 1.59E-05 11877100 6704.5 6698.6 8402.2 6924.9 6577 5745.7 6623.3 7887.7 8120.4 8887.9 TRUE FALSE 6798.383685 7429.975801 6280.960693 6480.767909 7472.89875 6764.619221 7880.036599 7217.590652 8900.400703 7076.541101 0.960693026 1.049944556 0.887574961 0.915810113 1.056010082 0.955921703 1.113543536 1.019931991 1.257733203 1 12.78882865 -7.763947625 1.433576816 1.110651449 0.965698452 0.33894016 0.082854616 0.465017162 1.936666249 0.047905621 0.028186694 1.72E-08 7.763947625 -0.144952997 ILEPDDFLDDLDDEDY(ph)EEDTPKRR ddPTM_K562_Paclitaxel_30min_R1 2 ILEPDDFLDDLDDEDYEEDTPKRR 24 2 J3KMZ8;Q92785 J3KMZ8 DPF2 Zinc finger protein ubi-d4 1 ILEPDDFLDDLDDEDY(0.529)EEDT(0.471)PKRR;ILEPDDFLDDLDDEDY(0.544)EEDT(0.456)PKRR 63.184 0.005558 34205000 6094.3 4953 10106.7 6250.1 4667 4432.5 4520.4 6402.7 5551.3 8513.9 TRUE FALSE 6179.639003 5493.78529 7555.138587 5849.24656 5302.724413 5218.54164 5378.122302 5858.750671 6084.527169 6778.762507 0.91161757 0.810440738 1.114530651 0.862878225 0.782255523 0.769836919 0.793378186 0.864280267 0.897586715 1 12.72680621 -2.853895649 14.49875529 0.872722636 0.990373259 0 0.102914631 0 0 0.024374563 0 0.001399924 2.853895649 0.117650623 ILEPDDFLDDLDDEDYEEDT(ph)PKRR ddPTM_K562_Paclitaxel_30min_R1 1 ILEPDDFLDDLDDEDYEEDTPKRR 24 2 J3KMZ8;Q92785 J3KMZ8 DPF2 Zinc finger protein ubi-d4 1 ILEPDDFLDDLDDEDY(0.046)EEDT(0.954)PKRR 109.77 2.08E-05 39496000 4654.8 4284.6 8486.5 5217.2 4038.9 3696.7 3284.7 5122.4 5247.3 6865.8 TRUE FALSE 4719.981561 4752.407118 6343.978115 4882.592143 4589.066559 4352.257841 3907.954678 4687.220147 5751.326611 5466.546191 0.86343029 0.869361925 1.160509377 0.893176783 0.839481896 0.796162273 0.714885513 0.857437216 1.052095127 1 12.4164139 -5.557663053 24.99975149 0.902408542 0.86490982 0.01665566 0.122910114 1102.904294 792661.7816 0.033919455 0.089743035 2.77E-06 5.557663053 -0.037498721 ILIPS(ph)DIESSK ddPTM_K562_Paclitaxel_30min_R1 2 ILIPSDIESSK 11 0 A0A087WYW3;P30414 A0A087WYW3 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 ILIPS(1)DIESSK;ILIPS(1)DIESSK 143.31 0.00046833 56488000 9470.1 8588 17149.5 11918 9330.3 8061.3 7236.7 10542.5 9248.3 11382 TRUE FALSE 9602.710618 9525.666883 12819.89662 11153.63282 10601.24482 9490.858369 8609.826047 9646.848821 10136.64054 9062.342152 1.059627904 1.051126378 1.414633922 1.230767128 1.169812908 1.047285372 0.950066319 1.064498411 1.118545335 1 13.14566825 -7.237071474 4.050673809 1.033399864 1.195276765 0.346857155 0.102456019 0.271927979 10.35421446 0.038674116 0.03697366 5.79E-08 7.237071474 0.161876901 ILIVTQT(ph)PHYMR ddPTM_K562_Paclitaxel_30min_R1 1 ILIVTQTPHYMR 12 0 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 ILIVT(0.163)QT(0.835)PHY(0.002)MR 103.43 0.020243 36197000 1432 1413.3 1111.2 1080.7 1083 1067.8 1247.2 1857.3 1326.5 1883.4 TRUE FALSE 1452.052418 1567.608873 830.6638169 1011.388739 1230.522935 1257.159337 1483.849689 1699.510772 1453.916252 1499.562046 0.968317664 1.0453778 0.553937611 0.67445608 0.82058821 0.838350998 0.989522036 1.133338081 0.969560583 1 10.5503255 -7.784584347 3.187204024 1.042608827 0.805524239 0.364229626 0.134332726 0.285960588 5.990372822 0.065300266 0.044235275 1.64E-08 7.784584347 -0.237084589 ILLPT(ph)T(ph)VPPAT(ph)MR ddPTM_K562_Paclitaxel_30min_R1 1 ILLPTTVPPATMR 13 0 Q93070 Q93070 ART4 Ecto-ADP-ribosyltransferase 4 3 ILLPT(1)T(1)VPPAT(1)MR 76.073 0.016663 11554000 53.52 0 0 0 0 0 0 0 0 126.38 TRUE FALSE 54.26944512 0 0 0 0 0 0 0 0 100.6236866 0.539330718 0 0 0 0 0 0 0 0 1 6.652826143 -11.88784873 2.579542955 1.489162368 0.047588001 0.753371287 0.161222781 32520672.08 18933442.56 96888537.36 0.041139412 1.29E-12 11.88784873 -1.441574367 ILLVDS(ph)PGMGNADDEQQEEGTSSK ddPTM_K562_Paclitaxel_30min_R1 2 ILLVDSPGMGNADDEQQEEGTSSK 24 0 Q9UKN8 Q9UKN8 GTF3C4 General transcription factor 3C polypeptide 4 1 ILLVDS(1)PGMGNADDEQQEEGTSSK;ILLVDS(1)PGMGNADDEQQEEGTSSK 153.76 1.82E-25 21285700 6112.9 5361 10875.3 7091.4 5861.9 5358.1 4883.4 7601 6983.5 8895.6 TRUE FALSE 6198.49946 5946.33211 8129.696011 6636.589344 6660.390023 6308.283804 5809.999657 6955.247606 7654.296378 7082.671837 0.875164006 0.839560585 1.147828983 0.937017766 0.940378176 0.89066442 0.820311853 0.982009017 1.080707472 1 12.79007798 -8.522458772 23.72344969 1.037355338 0.925376722 0.233122994 0.08674658 13.21768176 747205.5302 0.059601443 0.023153927 3.00E-09 8.522458772 -0.111978615 ILLWDTR ddPTM_K562_Paclitaxel_30min_R1 1 ILLWDTR 7 0 Q9BQA1;Q9BQA1-2;H0Y711 Q9BQA1 WDR77 Methylosome protein 50 0 123.99 0.0091992 7189100 4627.4 5034.6 5334.3 4839.9 4546.8 4244.4 5365.7 5003.3 4705.5 6477.9 FALSE TRUE 4692.197877 5584.294654 3987.589991 4529.490477 5166.151138 4997.084746 6383.813564 4578.238435 5157.4843 5157.700424 0.909746106 1.08271016 0.773133308 0.878199605 1.001638465 0.968859052 1.237724769 0.887651096 0.999958097 1 12.33251226 -6.880209466 5.138211334 1.021361729 0.913771605 0.183557324 0.108661313 0.388349579 15.89366958 0.034814418 0.039830162 1.32E-07 6.880209466 -0.107590124 ILMEHIHK ddPTM_K562_Paclitaxel_30min_R1 1 ILMEHIHK 8 0 J3QR09;J3KTE4;P84098 J3QR09 RPL19 Ribosomal protein L19;60S ribosomal protein L19 0 82.671 0.022366 7829800 6852.8 6797.7 11367 8216.2 6626.9 6431.3 6362.7 7749.5 7638.1 10301 FALSE TRUE 6948.760343 7539.895874 8497.260265 7689.249706 7529.595974 7571.800755 7569.989109 7091.131604 8371.773633 8201.650546 0.84723926 0.919314452 1.036042711 0.937524668 0.918058619 0.923204508 0.92298362 0.864598115 1.020742543 1 13.00169856 -8.785239382 24.99961995 1.010371405 0.925467541 0.358697308 0.047451211 319.8266809 335937.6376 0.04758056 0.012312903 1.64E-09 8.785239382 -0.084903863 ILNT(ph)SPDGHPYEK ddPTM_K562_Paclitaxel_30min_R1 1 ILNTSPDGHPYEK 13 0 Q16600 Q16600 ZNF239 Zinc finger protein 239 1 ILNT(0.494)S(0.494)PDGHPY(0.012)EK 108.66 0.012171 7906800 1903.7 1490.2 2746.8 1854.7 1590.8 1677.5 1373 2216.2 1838.2 2797.6 TRUE FALSE 1930.357673 1652.905076 2053.336368 1735.747843 1807.493892 1974.981072 1633.519582 2027.919977 2014.767323 2227.447584 0.866623164 0.742062389 0.921833754 0.779254181 0.811464164 0.886656586 0.733359381 0.910423209 0.904518399 1 11.12117577 -8.847081058 1.587055769 0.993653611 0.822409654 0.456405561 0.060499501 0.300227708 1.60351629 0.053213898 0.015844767 1.42E-09 8.847081058 -0.171243958 ILNTS(ph)PDGHPYEK ddPTM_K562_Paclitaxel_30min_R1 2 ILNTSPDGHPYEK 13 0 Q16600 Q16600 ZNF239 Zinc finger protein 239 1 ILNT(0.002)S(0.998)PDGHPYEK;ILNT(0.01)S(0.99)PDGHPYEK 217.19 4.23E-16 64265000 8914.1 6985.4 13890.1 8602.9 6775.1 6727.5 6069.8 8893.8 8446.1 9958.9 TRUE FALSE 9038.924902 7748.089595 10383.37246 8051.148499 7697.983323 7920.527666 7221.512864 8138.216177 9257.385643 7929.270713 1.139944041 0.977150343 1.30949905 1.015370617 0.97083119 0.998897371 0.910741117 1.026351158 1.167495218 1 12.95297247 -6.477901746 24.96500629 1.006597108 1.131816732 0.272645248 0.096128849 593.5360832 329448.7388 0.026942965 0.039960889 3.33E-07 6.477901746 0.125219625 ILPPLS(ph)PPQHR ddPTM_K562_Paclitaxel_30min_R1 4 ILPPLSPPQHR 11 0 A0A087WV20;A0A087WTU9;Q8TCU4-3;Q8TCU4-2;Q8TCU4 A0A087WV20 ALMS1 Alstrom syndrome protein 1 1 ILPPLS(1)PPQHR;ILPPLS(1)PPQHR;ILPPLS(1)PPQHR;ILPPLS(1)PPQHR 107.93 0.0042786 34805000 9186.84 8732.24 10804.6 9988.99 9243.21 7934.52 8480.25 9529.19 9128.84 9394.09 TRUE FALSE 9315.484104 9685.655494 8076.8451 9348.34089 10502.29169 9341.595716 10089.33317 8719.62583 10005.70587 7479.569301 1.245457289 1.294948292 1.079854304 1.24985016 1.404130541 1.248948347 1.348919003 1.165792505 1.33773824 1 12.86873948 -11.02339653 4.161306039 0.99997871 1.262334094 0.446861166 0.088086126 65390317.36 173013087.2 22939.50503 0.022098262 9.48E-12 11.02339653 0.262355384 ILQEKLDQPVS(ph)APPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 ILQEKLDQPVSAPPSPR 17 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 ILQEKLDQPVS(1)APPS(1)PR;ILQEKLDQPVS(1)APPS(1)PR;ILQEKLDQPVS(1)APPS(1)PR 80.314 0.016293 61981000 13758.5 10692.3 19893.2 13573.1 10399.4 10480.2 10068.4 14426.9 19753.1 17597.9 TRUE FALSE 13951.16145 11859.72147 14870.91562 12702.58212 11815.97434 12338.71632 11978.82634 13201.2448 21650.47351 14011.43832 0.995698024 0.846431409 1.061341119 0.906586592 0.843309164 0.880617395 0.854931954 0.942176277 1.54519993 1 13.77431744 -8.635976516 9.258660629 1.270840528 0.910881268 0.515612144 0.138322503 0.190218653 14.57374801 0.085995929 0.032308496 2.31E-09 8.635976516 -0.35995926 ILQEKLDQPVSAPPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 ILQEKLDQPVSAPPSPR 17 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 ILQEKLDQPVS(0.024)APPS(0.976)PR 112.82 0.0019353 9086400 458.84 436.44 821.33 485.82 428.66 413.65 330.28 458.13 723.17 596.9 TRUE FALSE 465.2651756 484.0919951 613.9750834 454.6616796 487.0507493 487.0050196 392.9489058 419.2089969 792.6337097 475.2514524 0.978987383 1.018601822 1.291895228 0.956676045 1.024827482 1.02473126 0.826823156 0.882078308 1.667819647 1 8.892547225 -8.735028214 24.99999839 1.333911 1.005247215 0.332739132 0.188720667 211.6945558 200384.5853 0.122915922 0.046427429 1.84E-09 8.735028214 -0.328663785 ILSQS(ph)TDSLNMR ddPTM_K562_Paclitaxel_30min_R1 4 ILSQSTDSLNMR 12 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 ILS(0.003)QS(0.836)T(0.016)DS(0.145)LNMR;ILS(0.009)QS(0.919)T(0.054)DS(0.017)LNMR;ILSQS(0.962)T(0.012)DS(0.026)LNMR;ILS(0.006)QS(0.715)T(0.235)DS(0.044)LNMR 149.32 0.00054903 81479000 7451 6427.47 7612.1 5919.94 4242.79 4075.31 2973.74 3087.8 3249.69 3270.56 TRUE FALSE 7555.336988 7129.242911 5690.33121 5540.261545 4820.729829 4798.009008 3537.991641 2825.472117 3561.837245 2604.018077 2.901414954 2.737785492 2.18521187 2.12758183 1.851265885 1.842540592 1.358666314 1.085043204 1.367823548 1 11.34652375 -5.894366719 0.322861065 0.936378842 3.925390266 0.953232534 0.134436791 0.935735357 0.107732236 0.154699005 1.063972656 1.28E-06 5.894366719 2.989011423 up ILVESQNRGVAVGVAFHYHLQR ddPTM_K562_Paclitaxel_30min_R1 1 ILVESQNRGVAVGVAFHYHLQR 22 1 E9PC35;P98164 E9PC35 LRP2 Low-density lipoprotein receptor-related protein 2 0 60.034 0.021029 81190000 6190.2 5568.4 8846 6657.2 5597.1 5216 5914.2 7304.8 8152.1 7787.7 FALSE TRUE 6276.881898 6176.376743 6612.717894 6230.236989 6359.51978 6140.984364 7036.388576 6684.211645 8935.14563 6200.562465 1.012308469 0.996099431 1.066470652 1.004785779 1.025635951 0.9903915 1.134798434 1.078000856 1.441021791 1 12.59818338 -8.153978758 1.928466006 1.20794397 1.018803079 0.304535268 0.108070913 0.384889968 2.717071543 0.067579189 0.0301698 7.01E-09 8.153978758 -0.189140891 ILY(ph)T(ph)PDTPAT(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 ILYTPDTPATR 11 0 O95477 O95477 ABCA1 ATP-binding cassette sub-family A member 1 3 ILY(1)T(0.999)PDT(0.002)PAT(0.999)R;ILY(0.998)T(0.997)PDT(0.005)PAT(0.999)R 89.189 0.01063 0 128.76 64.797 246.59 0 129.61 117.74 119.41 166.98 53.548 176.23 TRUE FALSE 130.5630373 71.87175559 184.3353047 0 147.2650763 138.6195358 142.0674241 152.7940067 58.69152466 140.3142293 0.930504611 0.512220008 1.313732083 0 1.04953772 0.987922156 1.012494776 1.088941639 0.418286335 1 7.13251751 IMAT(ph)PEQVGK ddPTM_K562_Paclitaxel_30min_R1 3 IMATPEQVGK 10 0 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 1 IMAT(1)PEQVGK;IMAT(1)PEQVGK;IMAT(1)PEQVGK 117.79 0.0081671 102738000 14422.3 12063.4 22670.2 14999.6 11953.5 10166.8 10251.7 14311.1 15616 18588.1 TRUE FALSE 14624.2567 13380.52281 16946.82763 14037.59279 13581.76907 11969.73923 12196.90656 13095.28273 17115.98657 14799.83502 0.988136468 0.904099457 1.145068686 0.948496573 0.91769733 0.80877518 0.824124495 0.884826264 1.156498471 1 13.85329347 -4.829418043 13.26284615 0.946763414 8.562454883 0.003928027 0.112575855 887355.9945 341088.9787 0.029351473 204240881.7 1.48E-05 4.829418043 7.615691469 IMDPNIVGSEHYDVAR ddPTM_K562_Paclitaxel_30min_R1 2 IMDPNIVGSEHYDVAR 16 0 P06576;H0YH81 P06576 ATP5B "ATP synthase subunit beta, mitochondrial;ATP synthase subunit beta" 0 ; 130.47 1.29E-06 71804000 6313.5 5959.2 7614.8 7284.8 5326.1 5995.6 5302 6593.3 6237.8 8231.1 FALSE TRUE 6401.908479 6609.845609 5692.349561 6817.585534 6051.604992 7058.835478 6308.026822 6033.158011 6836.968561 6553.597302 0.976854113 1.008582814 0.86858397 1.040281424 0.923402021 1.077093259 0.962528903 0.920587234 1.043239041 1 12.67807131 IMEETS(ph)GMEEEEEEESIAAVPGRR ddPTM_K562_Paclitaxel_30min_R1 3 IMEETSGMEEEEEEESIAAVPGRR 24 1 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 IMEET(0.216)S(0.784)GMEEEEEEESIAAVPGRR;IMEET(0.215)S(0.785)GMEEEEEEESIAAVPGRR;IMEET(0.211)S(0.789)GMEEEEEEESIAAVPGRR 101.92 1.23E-05 50402000 1743.76 2195.54 2703.14 2373.2 1801.24 1846.963 1996.99 2275.12 2488.81 2572.09 TRUE FALSE 1768.17802 2435.256482 2020.698875 2220.993574 2046.599383 2174.495955 2375.908428 2081.834355 2727.871321 2047.896646 0.863411747 1.18915009 0.986719168 1.08452425 0.999366539 1.061819189 1.160170086 1.016571983 1.332035641 1 10.99992719 -7.604315352 5.357453347 1.127980401 1.034545432 0.149002859 0.114338083 0.423435666 20.71530994 0.041284174 0.031744329 2.49E-08 7.604315352 -0.093434969 IMEGMSRSLPSS(ph)PLLTHQSISVR ddPTM_K562_Paclitaxel_30min_R1 1 IMEGMSRSLPSSPLLTHQSISVR 23 1 J3QQY7;J3KTM5 J3QQY7 TANC2 1 IMEGMS(0.01)RS(0.079)LPS(0.379)S(0.53)PLLTHQSISVR 49.655 0.030992 237180000 2970.2 2149.8 4289.9 2641.9 2330.5 2127.1 1763.8 2924.4 4123.3 2814.7 TRUE FALSE 3011.791964 2384.522434 3206.861688 2472.460359 2647.953556 2504.311319 2098.471842 2675.953966 4519.361388 2241.062595 1.343912468 1.064014204 1.430955876 1.103253592 1.181561622 1.117466029 0.936373597 1.194055879 2.016615421 1 11.12996723 -8.564705439 24.999989 1.540651332 1.162866987 0.206633049 0.262779455 188.4976982 112662.6955 0.162902477 0.06157146 2.72E-09 8.564705439 -0.377784345 IMNT(ph)FS(ph)VMPSPK ddPTM_K562_Paclitaxel_30min_R1 1 IMNTFSVMPSPK 12 0 Q13885;Q9BVA1;K7ESM5;Q9BUF5;K7ES63 Q13885 TUBB2A;TUBB2B;TUBB6 Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-6 chain 2 IMNT(0.999)FS(0.999)VMPS(0.002)PK 42.317 0.030841 13291000 497.16 434.46 616.18 578.14 551.84 358.4 421.38 541.83 228.23 865.75 TRUE FALSE 504.1217739 481.895812 460.6177382 541.0606881 627.0099507 421.9572078 501.3346552 495.7981595 250.1525113 689.3096748 0.731342954 0.699099156 0.668230485 0.784931226 0.909620122 0.612144618 0.727299607 0.719267664 0.362902945 1 9.429008454 IMPSSLDDRRGS(ph)RPR ddPTM_K562_Paclitaxel_30min_R1 2 IMPSSLDDRRGSRPR 15 3 A0A096LNH6;Q14185 A0A096LNH6 DOCK1 Dedicator of cytokinesis protein 1 1 IMPSSLDDRRGS(1)RPR;IMPSSLDDRRGS(1)RPR 81.789 0.016244 18554100 7554.6 7947.5 8275.4 9064.8 8503.9 8335.5 8035.7 8698.2 8258.6 8227.7 TRUE FALSE 7660.387708 8815.234927 6186.172921 8483.424301 9662.275152 9813.683889 9560.432126 7959.233618 9051.87543 6550.890224 1.16936591 1.345654503 0.944325536 1.295003276 1.474956048 1.498068744 1.459409607 1.21498504 1.381777914 1 12.67747526 -5.249149499 22.54067264 1.304040313 1.169365622 0.033924095 0.181279194 1856.903824 3405462.58 0.046772564 0.692644256 5.63E-06 5.249149499 -0.134674692 IMS(ph)SIGEGIDFSQER ddPTM_K562_Paclitaxel_30min_R1 2 IMSSIGEGIDFSQER 15 0 A0A3B3ISP1;Q92625 A0A3B3ISP1 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 IMS(0.896)S(0.104)IGEGIDFSQER;IMS(0.878)S(0.122)IGEGIDFSQER 169.98 8.20E-06 30710000 3294 2915.85 3862.5 3435 2640.9 3129.25 3438.3 3858.8 3590.1 4614 TRUE FALSE 3340.126163 3234.212364 2887.364104 3214.694474 3000.635291 3684.178551 4090.699476 3530.970854 3934.945146 3673.664267 0.909208333 0.880377772 0.785962977 0.875064851 0.816796275 1.00286207 1.113520229 0.961157743 1.071122688 1 11.84300407 -7.348700244 5.021230187 1.035767564 0.852670621 0.759707279 0.04972584 0.106851573 4.548919536 0.017388934 0.015296784 4.48E-08 7.348700244 -0.183096943 IMSCS(ph)PDTQCSR ddPTM_K562_Paclitaxel_30min_R1 7 IMSCSPDTQCSR 12 0 Q9C0C9;K7EQ12 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 1 IMS(0.163)CS(0.836)PDT(0.001)QCSR;IMS(0.002)CS(0.995)PDT(0.001)QCS(0.002)R;IMSCS(0.999)PDT(0.001)QCSR;IMS(0.001)CS(0.999)PDTQCSR;IMS(0.004)CS(0.943)PDT(0.053)QCSR;IMSCS(0.862)PDT(0.137)QCSR;IMS(0.002)CS(0.997)PDT(0.001)QCSR 214.42 3.68E-15 388640900 10847.3 10598.8 13979.8 12638.7 10685.3 9802.49 9584.53 12145.5 10089.3 12732.7 TRUE FALSE 10999.19567 11756.01283 10450.42659 11828.11035 12140.81876 11540.82397 11403.14453 11113.66397 11058.42235 10137.76875 1.084972042 1.15962527 1.030840893 1.166737045 1.197582926 1.138398818 1.124817977 1.096263314 1.090814223 1 13.30745254 -9.186372001 1.102272459 1.000727969 1.130543756 0.435967704 0.043738858 0.738007993 1.821349873 0.043045467 0.013678481 6.51E-10 9.186372001 0.129815787 IMTEFY(ph)QEDEMKLY(ph)RK ddPTM_K562_Paclitaxel_30min_R1 1 IMTEFYQEDEMKLYRK 16 2 Q86UF2 Q86UF2 CTAGE6 cTAGE family member 6 2 IMT(0.163)EFY(0.837)QEDEMKLY(1)RK 55.335 0.021394 20035000 809.78 609.91 771.07 652.64 580 614.27 852.29 880.03 774.76 615.74 TRUE FALSE 821.1194184 676.5020364 576.403842 610.7825915 659.0058195 723.2021597 1014.007578 805.2659585 849.1791597 490.25185 1.674893054 1.379907157 1.17573007 1.245854741 1.344218935 1.47516457 2.068340136 1.642555675 1.732128415 1 8.937379264 -7.531989677 24.99954497 1.679652383 1.354134329 0.131463724 0.276466398 297.1396453 815314.9045 0.101501771 0.078730624 2.94E-08 7.531989677 -0.325518054 INEMVHFDLPGQEERER ddPTM_K562_Paclitaxel_30min_R1 1 INEMVHFDLPGQEERER 17 1 Q9NVI7-3;Q9NVI7-2;Q9NVI7;Q5SV16 Q9NVI7-3 ATAD3A ATPase family AAA domain-containing protein 3A 0 134.02 1.81E-07 8500200 1479.7 1525.6 1805.7 1593.4 1387.5 1427.8 1106.1 1407.7 1499.3 2062.8 FALSE TRUE 1500.420365 1692.170167 1349.828702 1491.206456 1576.500991 1681.000283 1315.976701 1288.107098 1643.314464 1642.400228 0.913553432 1.030303174 0.821863441 0.907943405 0.959876262 1.023502222 0.801252142 0.784283317 1.000556647 1 10.68159002 -7.764646107 24.99996923 0.87854666 0.940505089 0.0480861 0.086998477 209.1517644 1630537.358 0.035363019 0.024964487 1.72E-08 7.764646107 0.061958429 INFS(ph)DLDQR ddPTM_K562_Paclitaxel_30min_R1 1 INFSDLDQR 9 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E9PGW9;E7EV93;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 INFS(1)DLDQR 114.24 0.00435 6084000 2295 2500.5 2774.1 2792.4 2314.3 2037.5 2157 2709.4 2445.7 3059.6 TRUE FALSE 2327.137081 2773.513046 2073.744145 2613.307962 2629.546841 2398.822017 2566.27949 2479.219558 2680.620413 2436.051841 0.955290459 1.138527925 0.851272584 1.07276369 1.079429755 0.984717146 1.053458488 1.017720361 1.100395471 1 11.25032912 INHTVILDDPFDDPPDLLIPDRS(ph)PEPTR ddPTM_K562_Paclitaxel_30min_R1 4 INHTVILDDPFDDPPDLLIPDRSPEPTR 28 1 Q8WUA2 Q8WUA2 PPIL4 Peptidyl-prolyl cis-trans isomerase-like 4 1 INHTVILDDPFDDPPDLLIPDRS(0.734)PEPT(0.266)R;INHTVILDDPFDDPPDLLIPDRS(0.894)PEPT(0.106)R;INHTVILDDPFDDPPDLLIPDRS(0.744)PEPT(0.256)R;INHTVILDDPFDDPPDLLIPDRS(0.501)PEPT(0.499)R 138.8 3.20E-24 967137000 5269.16 5588.39 6853.4 5570.12 5406.04 4621.59 5568.75 7182.4 3474.97 7471.6 TRUE FALSE 5342.944497 6198.549319 5123.174408 5212.877434 6142.434173 5441.164096 6625.391242 6572.210289 3808.756395 5948.883819 0.898142351 1.041968461 0.861199271 0.876278239 1.032535575 0.914652944 1.11372006 1.104780407 0.640247231 1 12.53840329 INHTVILDDPFDDPPDLLIPDRS(ph)PEPTREQLDSGR ddPTM_K562_Paclitaxel_30min_R1 6 INHTVILDDPFDDPPDLLIPDRSPEPTREQLDSGR 35 2 Q8WUA2 Q8WUA2 PPIL4 Peptidyl-prolyl cis-trans isomerase-like 4 1 INHTVILDDPFDDPPDLLIPDRS(0.792)PEPT(0.118)REQLDS(0.09)GR;INHTVILDDPFDDPPDLLIPDRS(0.689)PEPT(0.156)REQLDS(0.156)GR;INHTVILDDPFDDPPDLLIPDRS(0.871)PEPT(0.11)REQLDS(0.019)GR;INHTVILDDPFDDPPDLLIPDRS(0.816)PEPT(0.146)REQLDS(0.038)GR;INHTVILDDPFDDPPDLLIPDRS(0.754)PEPT(0.173)REQLDS(0.073)GR;INHTVILDDPFDDPPDLLIPDRS(0.903)PEPT(0.084)REQLDS(0.013)GR 93.2 1.22E-11 4671063000 3908.49 4186.15 5072.55 4779.72 3643.74 3696.9 4043.08 4909.19 4785.7 5636.65 TRUE FALSE 3963.220919 4643.208014 3791.922016 4473.170152 4140.079077 4352.493308 4810.233324 4492.123667 5245.387868 4487.897636 0.883090757 1.034606488 0.844921681 0.9967184 0.922498553 0.969829007 1.071823315 1.000941651 1.168785096 1 12.13182405 -7.661790023 3.873450489 1.060906935 0.940433876 0.438466487 0.0663295 0.213044342 6.018434344 0.025071326 0.01870094 2.18E-08 7.661790023 -0.12047306 INLCIHS(ph)EEEDMNLGLVRL ddPTM_K562_Paclitaxel_30min_R1 1 INLCIHSEEEDMNLGLVRL 19 1 P41002 P41002 CCNF Cyclin-F 1 INLCIHS(1)EEEDMNLGLVRL 71.527 0.0096742 2372700 591.86 595.24 606.88 489.47 495.58 426.01 486.22 560.55 717.85 930.11 TRUE FALSE 600.147866 660.2303162 453.6656382 458.077585 563.0863862 501.556892 578.4777068 512.9277787 786.8026999 740.5530715 0.810404938 0.891536801 0.612603817 0.618561454 0.760359261 0.677273394 0.781142809 0.692627981 1.062452821 1 9.532459319 -8.762050519 24.99989761 1.031226547 0.729166948 0.678787766 0.082726555 9.602619043 392660.8149 0.069683085 0.022124547 1.73E-09 8.762050519 -0.302059599 INNYLTVPAHKLDS(ph)PTMSR ddPTM_K562_Paclitaxel_30min_R1 2 INNYLTVPAHKLDSPTMSR 19 1 P19634 P19634 SLC9A1 Sodium/hydrogen exchanger 1 1 INNY(0.006)LT(0.038)VPAHKLDS(0.77)PT(0.172)MS(0.013)R;INNY(0.03)LT(0.154)VPAHKLDS(0.667)PT(0.118)MS(0.031)R 71.696 0.013948 12689000 2477.2 2192.77 3722.3 2485.1 1611.24 2121.02 1984.58 2712.7 2839.8 3848.8 TRUE FALSE 2511.888443 2432.184044 2782.559328 2325.716809 1830.718167 2497.153116 2361.143695 2482.239203 3112.575479 3064.412447 0.819696593 0.793686909 0.908023765 0.758943794 0.597412456 0.814888061 0.770504537 0.810021251 1.015716889 1 11.58139477 -8.725348339 4.712357446 1.011784727 0.780302058 0.600212147 0.073248329 0.133770377 6.616791034 0.062659809 0.020133309 1.88E-09 8.725348339 -0.23148267 INPPSSGGTSS(ph)SPIK ddPTM_K562_Paclitaxel_30min_R1 1 INPPSSGGTSSSPIK 15 0 A0A0C4DG88;A0A0A0MT46;P14859-4;P14859-5;P14859-3;P14859;P14859-2;P14859-6 A0A0C4DG88 POU2F1 "POU domain protein;POU domain, class 2, transcription factor 1" 1 INPPS(0.023)S(0.023)GGT(0.068)S(0.068)S(0.616)S(0.203)PIK 81.128 0.025357 9503800 749.92 601.84 1037.6 810.63 606.84 460.61 369.22 699.25 490.53 802.75 TRUE FALSE 760.4211937 667.5509265 775.6450471 758.63982 689.5018819 542.2927162 439.2775675 639.8443479 537.6475982 639.1491094 1.189739894 1.044436919 1.213558833 1.186952792 1.078780948 0.848460411 0.687284956 1.001087756 0.841192752 1 9.320008732 -7.152359649 3.773172087 0.863882781 1.152288509 0.673688692 0.093842856 0.142439057 3.649297728 0.032137561 0.032113758 7.04E-08 7.152359649 0.288405729 INPPSSGGTSSS(ph)PIK ddPTM_K562_Paclitaxel_30min_R1 2 INPPSSGGTSSSPIK 15 0 A0A0C4DG88;A0A0A0MT46;P14859-4;P14859-5;P14859-3;P14859;P14859-2;P14859-6 A0A0C4DG88 POU2F1 "POU domain protein;POU domain, class 2, transcription factor 1" 1 INPPSSGGTS(0.001)S(0.032)S(0.967)PIK;INPPSSGGT(0.002)S(0.008)S(0.067)S(0.922)PIK 198.61 2.35E-09 38926000 7808.3 6637.5 13919.6 8440.5 6903.5 6001.7 5443.4 8446.6 4853.3 10597 TRUE FALSE 7917.640291 7362.204697 10405.42482 7899.164108 7843.873577 7066.017227 6476.256734 7729.008608 5319.48115 8437.325583 0.938406396 0.872575631 1.233261028 0.936216581 0.929663493 0.837471205 0.767572221 0.916049586 0.630470058 1 13.04257006 -7.024557104 2.05793549 0.819796103 1.004715166 0.279487553 0.125744954 0.410107882 3.480055991 0.045436956 0.048984934 9.45E-08 7.024557104 0.184919063 INPYMS(ph)SPCHIEMILTEK ddPTM_K562_Paclitaxel_30min_R1 2 INPYMSSPCHIEMILTEK 18 0 A0A087WXM6;J3QQT2;J3QLC8;J3KRX5;A0A0A0MRF8;A0A0A6YYL6;P18621-2;P18621;P18621-3 A0A087WXM6 RPL17;RPL17-C18orf32 60S ribosomal protein L17 1 INPY(0.148)MS(0.76)S(0.092)PCHIEMILTEK;INPY(0.028)MS(0.673)S(0.299)PCHIEMILTEK 116.61 0.00016796 176468000 9852.1 8164.8 17137.2 12259.8 8331.8 7245.6 8414.2 11957.9 7352.8 15113.7 TRUE FALSE 9990.059796 9056.260476 12810.70191 11473.5113 9466.732219 8530.505427 10010.75052 10942.00176 8059.069293 12033.51964 0.830186021 0.752586171 1.064584784 0.953462631 0.786696868 0.708895292 0.831905446 0.909293547 0.669718381 1 13.55477105 -6.773209546 24.95362819 0.808481135 0.901402131 0.105730607 0.115583357 470.6311645 997769.5766 0.036263825 0.041444305 1.69E-07 6.773209546 0.092920996 INQEDSVPLIS(ph)DAVENMDSTLHYIHSDSDLSNNSSFSPDEERR ddPTM_K562_Paclitaxel_30min_R1 1 INQEDSVPLISDAVENMDSTLHYIHSDSDLSNNSSFSPDEERR 43 1 Q8TF05-2;Q8TF05 Q8TF05-2 PPP4R1 Serine/threonine-protein phosphatase 4 regulatory subunit 1 1 INQEDSVPLIS(0.288)DAVENMDS(0.022)T(0.009)LHY(0.008)IHS(0.022)DS(0.11)DLS(0.11)NNS(0.262)S(0.11)FS(0.058)PDEERR 56.522 1.05E-05 15380000 605.77 371.06 515.42 465.41 415.35 549.21 563.52 651.97 370.79 667.73 TRUE FALSE 614.252649 411.5735856 385.2958464 435.5606857 471.9277019 646.6046822 670.4449782 596.581079 406.4060362 531.6462595 1.155378483 0.774149311 0.724722199 0.819267846 0.887672383 1.216231038 1.261073442 1.122139145 0.76442941 1 9.054322831 -7.130356741 6.272596894 1.091414161 0.851873847 0.261464017 0.166191549 0.305461922 14.29511725 0.057051497 0.057189344 7.41E-08 7.130356741 -0.239540314 INQMVCNS(ph)DR ddPTM_K562_Paclitaxel_30min_R1 4 INQMVCNSDR 10 0 P06400;A0A3B3IS71 P06400 RB1 Retinoblastoma-associated protein 1 INQMVCNS(1)DR;INQMVCNS(1)DR;INQMVCNS(1)DR;INQMVCNS(1)DR 157.03 0.0002027 96561000 4321.43 3866.61 4734.08 4320.44 3852.02 3949.58 4138.78 5442.91 3191.47 6272.66 TRUE FALSE 4381.943353 4288.779556 3538.902954 4043.346316 4376.730339 4649.982558 4924.091899 4980.500822 3498.024953 4994.288449 0.877390923 0.858736855 0.70859002 0.809594071 0.876347128 0.931060071 0.985944634 0.997239321 0.700405071 1 12.28606343 -6.953088757 3.128170205 0.925832555 0.809521591 0.242665896 0.090749253 0.364767023 7.319160461 0.030524984 0.034136868 1.11E-07 6.953088757 -0.116310964 INS(ph)SPNVNTTASGVEDLNIIQVTIPDDDNER ddPTM_K562_Paclitaxel_30min_R1 1 INSSPNVNTTASGVEDLNIIQVTIPDDDNER 31 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 INS(0.498)S(0.498)PNVNT(0.003)T(0.001)ASGVEDLNIIQVTIPDDDNER 79.494 1.24E-05 7894900 885.57 967.65 1122.1 1188.7 832.55 839.6 746.89 1158.7 630.02 1025.9 TRUE FALSE 897.9707122 1073.301299 838.811977 1112.462102 945.9574052 988.4912714 888.6084785 1060.261203 690.536236 816.8210169 1.099348197 1.313998143 1.026922618 1.361941086 1.15809631 1.210168753 1.087886404 1.298033695 0.845394795 1 9.673876177 -8.76483497 24.99999492 0.922697324 1.194273302 0.506823729 0.107266431 66.8651277 492255.8742 0.081976085 0.024522189 1.72E-09 8.76483497 0.271575978 INSS(ph)PNVNTTASGVEDLNIIQVTIPDDDNER ddPTM_K562_Paclitaxel_30min_R1 1 INSSPNVNTTASGVEDLNIIQVTIPDDDNER 31 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 INS(0.313)S(0.416)PNVNT(0.12)T(0.12)AS(0.03)GVEDLNIIQVTIPDDDNER 77.488 2.54E-05 9528400 264.96 308.9 333.49 348.43 260.89 218.96 219.29 315.94 132.46 316.8 TRUE FALSE 268.6702575 342.6267466 249.2963249 326.0832593 296.4276349 257.7894816 260.8991327 289.098925 145.1833748 252.2359861 1.065154349 1.358357909 0.988345592 1.292770569 1.17519962 1.022017063 1.034345403 1.146144646 0.575585495 1 7.978630307 -8.213442099 1.139557582 0.844302728 1.170366868 0.353355096 0.162642664 0.54120062 1.24869145 0.13128812 0.052648699 6.12E-09 8.213442099 0.32606414 IPCDS(ph)PQSDPVDTPTSTK ddPTM_K562_Paclitaxel_30min_R1 2 IPCDSPQSDPVDTPTSTK 18 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 IPCDS(0.849)PQS(0.151)DPVDTPTSTK;IPCDS(0.947)PQS(0.053)DPVDTPTSTK 77.027 0.01404 48425000 3172.1 2831.7 5488.6 3548.7 3279 2528.91 2366.18 3666.3 2748.4 4328.3 TRUE FALSE 3216.519187 3140.874582 4102.935048 3321.102265 3725.655314 2977.376681 2815.150303 3354.824931 3012.3961 3446.190084 0.933355128 0.911404915 1.190571311 0.963702577 1.081093968 0.863961827 0.816887703 0.973488069 0.874123605 1 11.75078656 -7.270309775 24.95418649 0.898484959 1.017003473 0.274849777 0.089216974 838.9316778 2360074.544 0.031294427 0.027998206 5.37E-08 7.270309775 0.118518514 IPCKS(ph)SPELEDTATSSK ddPTM_K562_Paclitaxel_30min_R1 3 IPCKSSPELEDTATSSK 17 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 IPCKS(0.584)S(0.415)PELEDTATSSK;IPCKS(0.788)S(0.212)PELEDTATSSK;IPCKS(0.5)S(0.5)PELEDTATSSK 98.508 0.0018278 140277000 6575.8 4228.8 15357.3 7911.1 5005.7 5017.3 4090.42 7445 6241.6 10348.5 TRUE FALSE 6667.881488 4690.514685 11480.15968 7403.717455 5687.561087 5907.047709 4866.555842 6812.50078 6841.133568 8239.47002 0.809260969 0.569273834 1.393312877 0.898567194 0.690282394 0.716920833 0.590639426 0.826812982 0.830288059 1 13.00833583 IPCKSS(ph)PELEDTATSSK ddPTM_K562_Paclitaxel_30min_R1 1 IPCKSSPELEDTATSSK 17 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 IPCKS(0.056)S(0.944)PELEDTATSSK 93.255 0.0033838 19614000 1696.6 1271.7 3487.4 2110.9 1149.9 984.81 1082.3 1482.2 1357.3 2676.6 TRUE FALSE 1720.357634 1410.548507 2606.962738 1975.516322 1306.535848 1159.452226 1287.660775 1356.277858 1487.67473 2131.107451 0.807259922 0.661885212 1.223290143 0.926990482 0.613078354 0.544060895 0.604221422 0.636419275 0.69807589 1 11.05738762 -6.75819662 24.90269659 0.653613441 0.910246662 0.268416157 0.175757477 97.33976295 747511.8425 0.053141136 0.065746913 1.75E-07 6.75819662 0.256633221 IPDPDS(ph)DDVSEVDAR ddPTM_K562_Paclitaxel_30min_R1 1 IPDPDSDDVSEVDAR 15 0 P51532;A0A2R8Y4C5;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A2R8YGG3;A0A2R8YG32;A0A2R8Y440;A0A2R8Y7F3;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF58;A0A2R8Y6V2;A0A2R8YDA1;A0A0A0MT49;P51532-5;P51532-2;P51532-3;P51532-4;A0A2R8Y7R0;A0A2R8YGP5;A0A2R8Y583 P51532 SMARCA4 Transcription activator BRG1 1 IPDPDS(0.999)DDVS(0.001)EVDAR 91.657 0.01156 8873800 789.55 803.18 1205.6 822.1 915.45 1011.7 692.02 1021.4 893.09 1000.9 TRUE FALSE 800.606136 890.8739086 901.2313693 769.3741856 1040.149789 1191.11079 823.3271824 934.6256946 978.8752849 796.9160306 1.004630482 1.117901855 1.130898783 0.965439464 1.305218804 1.494650307 1.0331417 1.17280323 1.228329269 1 9.638283908 -6.764613553 24.99984825 1.220151254 1.064672316 0.21916979 0.137479327 130.5832 1028476.886 0.043053471 0.050906379 1.72E-07 6.764613553 -0.155478939 IPGS(ph)PPESMGR ddPTM_K562_Paclitaxel_30min_R1 1 IPGSPPESMGR 11 0 V9GYJ7;V9GYF8;Q5SX90;Q5SX86;Q5SX87;P50395-2;P50395 V9GYJ7 GDI2 Rab GDP dissociation inhibitor beta 1 IPGS(0.999)PPES(0.001)MGR 96.067 0.01036 0 921.07 852.41 1506.4 1077.6 1008.9 991.87 1105.7 1442.4 970.26 1421.4 TRUE FALSE 933.9678217 945.4790065 1126.090689 1008.487559 1146.329261 1167.764218 1315.500803 1319.859117 1063.457808 1131.7179 0.825265574 0.835436999 0.995027727 0.89111214 1.01291078 1.031850975 1.162392857 1.166243917 0.939684535 1 10.14429867 -6.402353855 0.815258626 1.079332258 0.821578511 0.542464677 0.076035599 0.587097628 0.746203091 0.037127475 0.102457596 3.96E-07 6.402353855 -0.257753747 IPGTPGAGGRLS(ph)PENNQVLTK ddPTM_K562_Paclitaxel_30min_R1 1 IPGTPGAGGRLSPENNQVLTK 21 1 Q16514-2;Q16514 Q16514-2 TAF12 Transcription initiation factor TFIID subunit 12 1 IPGT(0.138)PGAGGRLS(0.86)PENNQVLT(0.002)K 60.8 0.016806 171760000 2402.9 1876.3 4258.5 2467.8 2083.9 1856.6 1552.1 2867.2 1849.8 3276.3 TRUE FALSE 2436.548014 2081.160779 3183.389007 2309.526353 2367.762461 2185.841942 1846.602872 2623.613463 2027.481555 2608.588262 0.934048523 0.797811142 1.220349357 0.885354882 0.907679642 0.837940573 0.707893576 1.005759898 0.777233259 1 11.34905353 -6.495205253 24.98895335 0.866097645 0.980011857 0.130961932 0.128823336 1436.912213 1297520.956 0.035667791 0.052754833 3.20E-07 6.495205253 0.113914212 IPMTPTSSFVSPPPPT(ph)ASPHSNR ddPTM_K562_Paclitaxel_30min_R1 1 IPMTPTSSFVSPPPPTASPHSNR 23 0 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 IPMTPTSSFVSPPPPT(0.62)AS(0.378)PHS(0.003)NR 127.94 2.27E-08 23368000 912.49 761.98 889.67 868.5 752.06 612.26 867.17 1044.4 605.04 987.88 TRUE FALSE 925.2676753 845.1755533 665.0618052 812.7982973 854.5033045 720.8357144 1031.710981 955.6717011 663.1567954 786.5495137 1.176362911 1.074535727 0.84554347 1.033372068 1.086394804 0.916453067 1.311692351 1.215017852 0.843121487 1 9.619393777 IPMTPTSSFVSPPPPTAS(ph)PHSNR ddPTM_K562_Paclitaxel_30min_R1 1 IPMTPTSSFVSPPPPTASPHSNR 23 0 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 IPMTPTSSFVSPPPPT(0.306)AS(0.634)PHS(0.059)NR 119.37 1.69E-06 19005000 698.44 805.87 892.07 749.25 692.72 621.99 802 1114 525.19 991.03 TRUE FALSE 708.2203149 893.8576119 666.8558955 701.1964585 787.0801918 732.2911933 954.1753133 1019.358747 575.6368461 789.057542 0.897552177 1.132816765 0.845129614 0.8886506 0.997494036 0.928058037 1.20925948 1.291868707 0.729524547 1 9.623986702 -7.723680611 24.99873973 1.081985882 0.95150878 0.09691906 0.156498009 333.6291587 220883.4763 0.05888271 0.045609344 1.89E-08 7.723680611 -0.130477102 IPNSYEVLFPES(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 1 IPNSYEVLFPESPAR 15 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 IPNSYEVLFPES(0.999)PAR 87.157 0.01674 16831000 194.16 387.95 501.09 496.13 273.58 296.12 318.96 476.96 364.53 446.36 TRUE FALSE 196.878839 430.307693 374.5836321 464.3104424 310.8462277 348.6327243 379.4809949 436.4392709 399.5447353 355.391587 0.553977208 1.21079876 1.054002531 1.306475616 0.874658374 0.980981928 1.067782719 1.22805178 1.124238023 1 8.473265719 -5.253850117 24.77268432 1.095403819 0.553976912 0.636883569 0.122349506 535.5655626 1748133.347 0.030913729 0.316959508 5.57E-06 5.253850117 -0.541426907 IPNYQLS(ph)PTKLPSINK ddPTM_K562_Paclitaxel_30min_R1 1 IPNYQLSPTKLPSINK 16 1 A0A0C4DG07;O60934 A0A0C4DG07 NBN Nibrin 1 IPNY(0.004)QLS(0.986)PT(0.01)KLPS(0.001)INK 70.414 0.02779 33019000 2357.8 1519.1 4565.4 2371.9 1985.4 1693.1 1430 2288.4 1953.8 3128.2 TRUE FALSE 2390.816474 1684.960475 3412.808306 2219.77695 2255.845093 1993.347513 1701.335035 2093.986136 2141.47122 2490.671123 0.959908537 0.676508616 1.370236429 0.891236474 0.905717769 0.80032546 0.683082973 0.840731688 0.859796864 1 11.28231882 -6.861112359 2.618885757 0.82059387 0.984349256 0.11969694 0.174743062 0.55383453 7.723106884 0.058650406 0.069564177 1.38E-07 6.861112359 0.163755387 IPPIIEESSS(ph)PPYR ddPTM_K562_Paclitaxel_30min_R1 1 IPPIIEESSSPPYR 14 0 A0A5H1ZRR2;Q6P9H4 A0A5H1ZRR2 CNKSR3 Connector enhancer of kinase suppressor of ras 3 1 IPPIIEES(0.175)S(0.175)S(0.651)PPYR 130.19 8.81E-05 8942900 199.26 189.22 237.18 121.06 120.09 189.98 226.11 244.45 153.36 285.54 TRUE FALSE 202.0502548 209.8796795 177.3009756 113.2957534 136.4482911 223.6702855 269.0131921 223.6824467 168.0909132 227.3467913 0.8887315 0.923169746 0.779870147 0.498338916 0.600176894 0.983828645 1.183272439 0.983882136 0.739359075 1 7.828750832 -7.286575522 22.22954348 0.98988653 0.737346732 0.378286967 0.153470923 226.3429785 200168.2047 0.060251703 0.053176127 5.17E-08 7.286575522 -0.252539798 IPSIVS(ph)SPLNSPLDR ddPTM_K562_Paclitaxel_30min_R1 1 IPSIVSSPLNSPLDR 15 0 P49790-2;P49790;P49790-3 P49790-2 NUP153 Nuclear pore complex protein Nup153 1 IPSIVS(0.5)S(0.5)PLNSPLDR 142.54 3.57E-06 52571000 1387.7 1276.6 1566.4 1307.3 1363 1121 1362.7 1648.5 1247.2 1493.7 TRUE FALSE 1407.132081 1415.983505 1170.942947 1223.455629 1548.663676 1319.79361 1621.265211 1508.449635 1366.999133 1189.28312 1.183176703 1.190619358 0.9845788 1.028733704 1.302182508 1.10973879 1.363228977 1.268368826 1.149431207 1 10.21587649 -6.75578653 24.99887714 1.216009376 1.095465996 0.153800545 0.113014872 227.5083661 1006116.287 0.033633169 0.042211007 1.75E-07 6.75578653 -0.12054338 IPSIVSS(ph)PLNSPLDR ddPTM_K562_Paclitaxel_30min_R1 1 IPSIVSSPLNSPLDR 15 0 P49790-2;P49790;P49790-3 P49790-2 NUP153 Nuclear pore complex protein Nup153 1 IPSIVS(0.036)S(0.962)PLNS(0.002)PLDR 155.37 5.20E-05 41860000 1170.2 1203.4 1819 1461.6 1120.1 1445.4 1445.5 1459.5 1430.1 1480.3 TRUE FALSE 1186.58641 1334.791282 1359.770953 1367.859518 1272.676583 1701.721396 1719.776079 1335.506365 1567.467495 1178.614047 1.006764185 1.132509225 1.153703331 1.160566108 1.079807751 1.443832609 1.459151181 1.133115941 1.329924328 1 10.20287565 -7.233972965 24.56291983 1.293146235 1.113712784 0.271658497 0.134125474 757.2987378 677244.5958 0.043668055 0.043656761 5.83E-08 7.233972965 -0.179433452 IPYPGRSPQDLASTS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 IPYPGRSPQDLASTSR 16 1 Q9HC52;C9JM54;C9J6K3 Q9HC52 CBX8 Chromobox protein homolog 8 1 IPYPGRS(0.217)PQDLAS(0.02)T(0.02)S(0.744)R 103.77 0.0066756 5888800 517.27 389.73 530.74 409.04 233.76 423.42 512.53 432.25 350.34 532.62 TRUE FALSE 524.5133759 432.2820394 396.7481229 382.8060052 265.6020696 498.5075919 609.7798919 395.5276645 383.9917224 424.0717516 1.236850542 1.01936061 0.935568383 0.902691593 0.626313987 1.175526523 1.43791679 0.93269043 0.905487623 1 8.728164575 IQALGLHLPDPPLES(ph)EDEDEEGATALNNHSSIPMDPEHVELVKR ddPTM_K562_Paclitaxel_30min_R1 1 IQALGLHLPDPPLESEDEDEEGATALNNHSSIPMDPEHVELVKR 44 1 A0A2R8Y7W8;A0A2R8Y6W5;Q16626 A0A2R8Y7W8 MEA1 Male-enhanced antigen 1 1 IQALGLHLPDPPLES(0.524)EDEDEEGAT(0.295)ALNNHS(0.086)S(0.095)IPMDPEHVELVKR 42.55 0.0013976 41110000 1181.5 1321.8 2133.8 1024.1 773.75 1176.1 998.94 2024.4 2129.2 2072.3 TRUE FALSE 1198.044645 1466.118594 1595.095799 958.4188097 879.1478497 1384.664822 1188.48365 1852.414584 2333.719174 1649.964122 0.726103452 0.888576045 0.966745748 0.580872515 0.532828464 0.839209049 0.720308784 1.122699917 1.414406011 1 10.68821894 -8.34005173 4.222681821 1.222559383 0.752253824 0.616901113 0.155026763 0.153068295 5.099351252 0.094529452 0.04300282 4.57E-09 8.34005173 -0.470305559 IQALGLHLPDPPLESEDEDEEGAT(ph)ALNNHSSIPMDPEHVELVKR ddPTM_K562_Paclitaxel_30min_R1 1 IQALGLHLPDPPLESEDEDEEGATALNNHSSIPMDPEHVELVKR 44 1 A0A2R8Y7W8;A0A2R8Y6W5;Q16626 A0A2R8Y7W8 MEA1 Male-enhanced antigen 1 1 IQALGLHLPDPPLES(0.266)EDEDEEGAT(0.659)ALNNHS(0.049)S(0.026)IPMDPEHVELVKR 41.721 0.01169 21074000 1147.8 1126.9 1487.3 1129.3 811.42 920.58 950.9 1618.1 1494.4 1569.3 TRUE FALSE 1163.872741 1249.938753 1111.81272 1056.871753 921.9491415 1083.831937 1131.328311 1480.632305 1637.943797 1249.475799 0.931488823 1.000370519 0.889823334 0.84585212 0.737868747 0.867429316 0.905442356 1.185002788 1.31090478 1 10.28710724 -8.244155149 5.123567835 1.188436297 0.878352777 0.650734178 0.09457557 0.106992545 8.75296224 0.050335944 0.026605685 5.70E-09 8.244155149 -0.310083521 IQAQFAQLAQLS(ph)PQER ddPTM_K562_Paclitaxel_30min_R1 2 IQAQFAQLAQLSPQER 16 0 K7EK35;P42229;P42229-2;K7EIF9 K7EK35 STAT5A Signal transducer and activator of transcription;Signal transducer and activator of transcription 5A 1 IQAQFAQLAQLS(1)PQER;IQAQFAQLAQLS(1)PQER 165.24 1.47E-07 196938000 3574.4 3517.09 4505.1 3844.4 3337.07 3125.36 4494.3 5269.5 3529.4 5746.9 TRUE FALSE 3624.452628 3901.09778 3367.731787 3597.837391 3791.635431 3679.598714 5347.069963 4821.823084 3868.41464 4575.678625 0.792112586 0.852572503 0.736007063 0.78629591 0.828649855 0.804164587 1.168585122 1.053794088 0.845429707 1 12.15977001 -7.730583578 23.50500098 1.021434949 0.800133035 0.645234197 0.078793966 64.25850691 48949.9079 0.03041044 0.023551924 1.86E-08 7.730583578 -0.221301914 IQAQFGPLAQLS(ph)PQER ddPTM_K562_Paclitaxel_30min_R1 2 IQAQFGPLAQLSPQER 16 0 P51692 P51692 STAT5B Signal transducer and activator of transcription 5B 1 IQAQFGPLAQLS(1)PQER;IQAQFGPLAQLS(1)PQER 171.56 5.56E-09 73985000 2828.5 2525.6 3167.6 2684.5 2202 2094.9 2537.3 2916.5 2316.1 2777 TRUE FALSE 2868.107727 2801.353549 2367.900204 2512.328185 2501.94968 2466.401101 3018.739429 2668.725121 2538.571754 2211.045876 1.297172419 1.266981196 1.070941236 1.136262351 1.131568416 1.115490695 1.365299319 1.20699672 1.148131652 1 11.11051324 -5.606497366 8.114319931 1.160122119 1.28966326 0.257360533 0.090265635 0.331697767 27.59601297 0.023665563 0.063131706 2.47E-06 5.606497366 0.129541141 IQDPTEDAEAEDT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 IQDPTEDAEAEDTPR 15 0 H0Y9L4;O96028-5;O96028-3;O96028 H0Y9L4 WHSC1 Histone-lysine N-methyltransferase NSD2 1 IQDPTEDAEAEDT(1)PR;IQDPT(0.001)EDAEAEDT(0.999)PR 114.56 0.003641 71098000 1770.19 1878.73 2741.9 2241.36 2075.56 1637.48 1588 2289.27 1109.12 2876.82 TRUE FALSE 1794.978122 2083.856095 2049.673434 2097.609202 2358.286412 1927.864087 1889.31471 2094.782224 1215.655932 2290.522505 0.783654436 0.909773246 0.894849725 0.9157776 1.029584475 0.841670004 0.824840056 0.914543393 0.530733022 1 11.16146102 IQELELSER ddPTM_K562_Paclitaxel_30min_R1 2 IQELELSER 9 0 E9PNW5 E9PNW5 C4orf50 0 ; 109.48 0.013552 11800400 3419.5 3203.2 3542.4 3931.5 3491.3 3464.3 3432.1 4295.8 2421.4 4767.2 FALSE TRUE 3467.38355 3552.936209 2648.077308 3679.351187 3966.874168 4078.644964 4083.323058 3930.844976 2653.986289 3795.642023 0.913517009 0.936056716 0.697662554 0.969362012 1.045112828 1.074559966 1.075792457 1.035620575 0.699219334 1 11.89012822 -6.499209135 24.60457852 0.999607438 0.853732488 0.216746865 0.118208369 929.1740011 965877.1538 0.03395212 0.049996046 3.17E-07 6.499209135 -0.14587495 IQEQES(ph)S(ph)GEEDSDLSPEER ddPTM_K562_Paclitaxel_30min_R1 1 IQEQESSGEEDSDLSPEER 19 0 E7EMN6;Q6NXS1;P41236 E7EMN6 PPP1R2;PPP1R2P3 Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2 2 IQEQES(0.971)S(0.827)GEEDS(0.088)DLS(0.113)PEER 93.115 0.008369 52204000 1262 1287.3 1887.2 1490.3 1055.4 993.13 1244.3 1430.7 1054.1 1848.7 TRUE FALSE 1279.671894 1427.851767 1410.753019 1394.718828 1199.163348 1169.247661 1480.399429 1309.153105 1155.351015 1471.933925 0.869381344 0.970051538 0.958435019 0.947541737 0.814685583 0.794361514 1.00575128 0.889410239 0.784920434 1 10.5234972 -6.711128484 24.99987312 0.877845259 0.940336953 0.109834258 0.075700928 229.0020376 113791.5662 0.022496109 0.029042313 1.94E-07 6.711128484 0.062491694 IQEQESS(ph)GEEDSDLSPEER ddPTM_K562_Paclitaxel_30min_R1 1 IQEQESSGEEDSDLSPEER 19 0 E7EMN6;Q6NXS1;P41236 E7EMN6 PPP1R2;PPP1R2P3 Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2 1 IQEQES(0.084)S(0.913)GEEDS(0.002)DLSPEER 190.37 1.70E-16 21185000 878.77 1244.9 1439.2 1074.6 1171.3 1189 963.27 1384.6 685.96 1452 TRUE FALSE 891.0754912 1380.822392 1075.85616 1005.679966 1330.85089 1399.852456 1146.045454 1266.969588 751.849523 1156.081603 0.77077214 1.194398724 0.930605727 0.869903961 1.151173833 1.210859555 0.991318823 1.095917091 0.650342952 1 10.17502752 -8.740511549 24.99871662 0.825171214 1.033103689 0.209566524 0.156311632 302.1493944 360926.0236 0.102432167 0.038626549 1.82E-09 8.740511549 0.207932475 IQIISTDSAVAS(ph)PQR ddPTM_K562_Paclitaxel_30min_R1 2 IQIISTDSAVASPQR 15 0 P49116;P49116-2;C9J2Y1;C9JMI6;C9JKS0 P49116 NR2C2 Nuclear receptor subfamily 2 group C member 2 1 IQIISTDSAVAS(1)PQR;IQIIST(0.001)DS(0.006)AVAS(0.993)PQR 166.62 2.74E-05 58055000 2598.5 3176.3 3402.9 3359.2 2900.2 2614.64 2702.8 3149.7 2599.3 3949.4 TRUE FALSE 2634.887017 3523.099176 2543.795808 3143.755947 3295.256341 3078.309693 3215.64219 2882.113325 2848.974379 3144.510112 0.837932436 1.120396834 0.808964105 0.999760165 1.047939496 0.978947303 1.022621037 0.916554001 0.906015334 1 11.61861956 -4.023034247 10.80501629 0.967015974 0.666487185 0 0.091312187 46271380.48 0 0.020198196 0 9.48E-05 4.023034247 -0.300528789 IQNWHEEHR ddPTM_K562_Paclitaxel_30min_R1 2 IQNWHEEHR 9 0 A0A2R8Y7M3;A0A2R8Y5S7;P35241-4;P35241;P35241-5 A0A2R8Y7M3 RDX Radixin 0 ; 85.862 0.019365 12776100 2028.35 1933 2555.41 2485.07 2100.13 1801.62 2184.92 2422.07 1824.06 2676.5 FALSE TRUE 2056.753158 2144.051477 1910.265141 2325.688733 2386.203261 2121.112011 2599.497164 2216.300035 1999.269113 2131.027831 0.96514608 1.006111439 0.896405534 1.091346016 1.11974289 0.995346931 1.219832574 1.04001459 0.938171283 1 11.05733372 -6.275180396 24.821868 1.066179162 0.960910057 0.262019056 0.077331269 916.0675396 1654788.469 0.021864931 0.032629863 5.31E-07 6.275180396 -0.105269105 IQPEDMFVCDINEKDISGPS(ph)PSK ddPTM_K562_Paclitaxel_30min_R1 2 IQPEDMFVCDINEKDISGPSPSK 23 1 S4R3D6;Q96GX9-3;Q96GX9 S4R3D6 APIP Methylthioribulose-1-phosphate dehydratase 1 IQPEDMFVCDINEKDIS(0.001)GPS(0.5)PS(0.5)K;IQPEDMFVCDINEKDIS(0.009)GPS(0.793)PS(0.198)K 93.236 0.00017693 35621000 3911.4 2582 8183.8 3656.4 2770 2645.9 2078.52 3737.7 4313.4 6113 TRUE FALSE 3966.171668 2863.911492 6117.698474 3421.894869 3147.320896 3115.113215 2472.908319 3420.159055 4727.721343 4867.167245 0.814882963 0.588414441 1.256932044 0.703056767 0.646643261 0.640025924 0.508079586 0.70270013 0.971349679 1 12.24886663 -4.923402408 19.78020239 0.762127671 2.542387451 0 0.217984327 3445.331196 992897.3498 0.05342501 31439.77272 1.19E-05 4.923402408 1.780259781 IQPQPPDEDGDHS(ph)DKEDEQPQVVVLK ddPTM_K562_Paclitaxel_30min_R1 2 IQPQPPDEDGDHSDKEDEQPQVVVLK 26 1 Q96AT1 Q96AT1 KIAA1143 Uncharacterized protein KIAA1143 1 IQPQPPDEDGDHS(1)DKEDEQPQVVVLK;IQPQPPDEDGDHS(1)DKEDEQPQVVVLK 75.539 0.00015273 54808000 4546.27 3486.1 10242.3 5307.6 3645.63 3187.85 2755.94 5204.6 4742.6 6867.3 TRUE FALSE 4609.931806 3866.724187 7656.50469 4967.194292 4142.226527 3753.170438 3278.865228 4762.436744 5198.147921 5467.74049 0.843114595 0.707188681 1.400305063 0.908454653 0.757575553 0.686420733 0.599674625 0.87100636 0.950693971 1 12.41672906 IQPS(ph)SPPPNHPNNHLFR ddPTM_K562_Paclitaxel_30min_R1 1 IQPSSPPPNHPNNHLFR 17 0 H0Y4E8;Q9Y2K2-7;Q9Y2K2;Q9Y2K2-8 H0Y4E8 SIK3 Serine/threonine-protein kinase SIK3 1 IQPS(0.859)S(0.141)PPPNHPNNHLFR 95.195 0.0028621 32924000 712.11 730.66 876.8 931.52 696.93 619.63 545.77 933.8 805.32 1007.1 TRUE FALSE 722.081737 810.4359297 655.4409959 871.7764765 791.8636651 729.5126805 649.3270084 854.4678614 882.6745843 801.8524672 0.900516949 1.010704541 0.817408467 1.087203086 0.987542843 0.909784169 0.809783638 1.0656173 1.100794249 1 9.647193009 -8.370530928 24.97152539 1.06240897 0.937728838 0.316280793 0.082789349 33.8035391 7716.536047 0.045300557 0.021761684 4.26E-09 8.370530928 -0.124680133 IQPSS(ph)PPPNHPNNHLFR ddPTM_K562_Paclitaxel_30min_R1 1 IQPSSPPPNHPNNHLFR 17 0 H0Y4E8;Q9Y2K2-7;Q9Y2K2;Q9Y2K2-8 H0Y4E8 SIK3 Serine/threonine-protein kinase SIK3 1 IQPS(0.014)S(0.986)PPPNHPNNHLFR 114.9 0.00036921 31311000 915.47 745.42 977.37 844.13 801.52 818.59 1070.9 1084.1 829.87 921.02 TRUE FALSE 928.2894045 826.8074764 730.6208555 789.99128 910.7005938 963.7554429 1274.097685 991.9989383 909.5827215 733.3156184 1.265879767 1.127491977 0.996325235 1.07728686 1.241894446 1.314243715 1.737447904 1.352758503 1.240370038 1 9.518290457 -7.067834749 2.774813292 1.376313586 1.110868825 0.209435927 0.182706482 0.3544126 5.375120698 0.064808442 0.067592805 8.55E-08 7.067834749 -0.265444762 IQQALT(ph)SPLPMT(ph)PILEGSHR ddPTM_K562_Paclitaxel_30min_R1 1 IQQALTSPLPMTPILEGSHR 20 0 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 2 IQQALT(0.536)S(0.464)PLPMT(0.993)PILEGS(0.007)HR 76.161 0.0079922 3555100 983.03 722.41 1169.8 582.21 459.12 545.88 475.88 880.93 1012 1020.3 TRUE FALSE 996.7954529 801.2851668 874.4695221 544.8696565 521.659917 642.6841535 566.1757457 806.0894979 1109.207122 812.3622999 1.227033127 0.986364294 1.076452615 0.67072248 0.642151805 0.79112996 0.696949804 0.99227832 1.365409401 1 9.665979478 -10.85321535 12.01227099 1.000000874 0.917691625 0 0.230930356 0 0 0.238486255 0.057841413 1.40E-11 10.85321535 -0.082309248 IQQALTS(ph)PLPMTPILEGSHR ddPTM_K562_Paclitaxel_30min_R1 2 IQQALTSPLPMTPILEGSHR 20 0 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 IQQALT(0.355)S(0.645)PLPMTPILEGSHR;IQQALT(0.159)S(0.841)PLPMTPILEGSHR 94.955 0.00066249 37429000 3006.4 2898.8 3800.1 2917.3 2854.6 2845.5 2293.1 3020.8 2144.9 3470.1 TRUE FALSE 3048.498876 3215.300787 2840.717756 2730.197435 3243.444849 3350.109472 2728.203754 2764.164185 2350.927229 2762.891715 1.103372549 1.163744771 1.028168328 0.988166645 1.173931222 1.212537377 0.987445052 1.000460557 0.850893727 1 11.43196331 -7.931017789 7.830483837 0.953971775 1.107394207 0.509892412 0.073547001 0.220425013 21.68252485 0.032947884 0.022150099 1.17E-08 7.931017789 0.153422433 IQQFDDGGS(ph)DEEDIWEEKHIAFTPESQR ddPTM_K562_Paclitaxel_30min_R1 3 IQQFDDGGSDEEDIWEEKHIAFTPESQR 28 1 H0YEN2;E9PQP7;H7BXH2;E9PKF6;Q5H9R7-4;Q5H9R7-6;Q5H9R7-2;Q5H9R7;Q5H9R7-5;Q5H9R7-3 H0YEN2 PPP6R3 Serine/threonine-protein phosphatase 6 regulatory subunit 3 1 IQQFDDGGS(1)DEEDIWEEKHIAFTPESQR;IQQFDDGGS(1)DEEDIWEEKHIAFTPESQR;IQQFDDGGS(1)DEEDIWEEKHIAFTPESQR 97.847 4.55E-08 95275000 2902.95 2546.96 4655.76 3231.49 2313.79 2046.41 1771.93 3075.04 3442.92 3735.62 TRUE FALSE 2943.600256 2825.045706 3480.355806 3024.236695 2628.967371 2409.31208 2108.144467 2813.796158 3773.627849 2974.298593 0.989678798 0.949819131 1.170143379 1.016789875 0.883894904 0.810043782 0.708787098 0.946036879 1.268745464 1 11.53833377 -3.298163741 8.300000632 0.96437036 1.334890275 0 0.153560471 0 0 0.037630369 0 0.000503311 3.298163741 0.370519915 IQRPNTTQEGEEMETDMDVADVAMESS(ph)PGSSISMEHR ddPTM_K562_Paclitaxel_30min_R1 2 IQRPNTTQEGEEMETDMDVADVAMESSPGSSISMEHR 37 1 A0A087X1S3 A0A087X1S3 HUWE1 1 IQRPNTTQEGEEMETDMDVADVAMES(0.201)S(0.786)PGS(0.01)S(0.003)ISMEHR;IQRPNTTQEGEEMETDMDVADVAMES(0.213)S(0.769)PGS(0.013)S(0.004)IS(0.001)MEHR 145.62 1.98E-39 192640000 4142.1 3736 4909.2 4175.8 3659.9 3622.2 3709.5 4932.7 3152.2 5484.8 TRUE FALSE 4200.102179 4143.909114 3669.811744 3907.982878 4158.440343 4264.546312 4413.35826 4513.636346 3454.982894 4366.994749 0.961783199 0.948915525 0.840351765 0.894890675 0.952243037 0.976540288 1.0106168 1.033579522 0.791158014 1 12.09242508 -6.894199495 4.914453604 0.967170726 0.90936328 0.107202804 0.06910638 0.457122978 18.00054971 0.021935189 0.025067301 1.28E-07 6.894199495 -0.057807446 IQVEQTRDEDLDTDS(ph)LD ddPTM_K562_Paclitaxel_30min_R1 2 IQVEQTRDEDLDTDSLD 17 1 V9GYT7 V9GYT7 PSIP1 1 IQVEQTRDEDLDT(0.198)DS(0.802)LD;IQVEQTRDEDLDT(0.008)DS(0.992)LD 152.94 3.62E-07 26730000 2229.18 1694.73 2784.4 2272.61 2281.7 1761.42 2283.7 2400.51 2168.16 2732.7 TRUE FALSE 2260.395398 1879.766353 2081.443783 2126.854966 2592.506169 2073.783105 2717.020153 2196.571692 2376.421456 2175.77424 1.038892435 0.863952849 0.956645108 0.977516384 1.191532707 0.953124211 1.248760144 1.009558644 1.092218766 1 11.08731315 -6.571354646 11.55935132 1.084899223 0.948035455 0.304873892 0.091609355 0.753564835 177.4697216 0.025255648 0.032616083 2.68E-07 6.571354646 -0.136863768 IQVLQQQADDAEERAER ddPTM_K562_Paclitaxel_30min_R1 1 IQVLQQQADDAEERAER 17 1 P06753-2;A0A087WWU8;P06753-6;P06753-3;P06753-5;P06753-4;D6R904;Q5VU61 P06753-2 TPM3 Tropomyosin alpha-3 chain 0 107.73 0.0083398 45803000 1120.7 1143.5 1160 1256.1 964.4 988.19 1028.6 1236.2 1405.5 1299.4 FALSE TRUE 1136.393258 1268.351197 867.1436533 1175.539368 1095.767607 1163.431622 1223.77148 1131.177094 1540.504555 1034.581567 1.098408568 1.225955727 0.838158809 1.136246194 1.059140857 1.124543157 1.182866117 1.093366758 1.489012181 1 10.01483168 -7.790399645 1.423848607 1.217548668 1.069798914 0.124532241 0.147976915 0.827149304 3.385194847 0.087647964 0.050255253 1.62E-08 7.790399645 -0.147749754 IQVWHEEHR ddPTM_K562_Paclitaxel_30min_R1 5 IQVWHEEHR 9 0 P26038 P26038 MSN Moesin 0 ;;;; 101.65 0.0082532 350775000 9737.5 9266.8 11537.1 11080.6 8727.6 9312.7 9580.2 10531.5 9217.5 12159.4 FALSE TRUE 9873.855043 10278.58056 8624.416416 10369.93991 9916.446879 10964.17659 11397.99294 9636.783339 10102.88206 9681.307606 1.019888578 1.061693418 0.890831773 1.071130092 1.024287966 1.132509888 1.177319573 0.995401007 1.043545198 1 13.2409862 -6.412799317 18.89411935 1.069301883 0.995064271 0.194973976 0.066740456 6.826184506 1158.131193 0.019380275 0.02874554 3.87E-07 6.412799317 -0.074237612 IRAEEEDLAAVPFLAS(ph)DNEEEEDEKGNSGSLIR ddPTM_K562_Paclitaxel_30min_R1 1 IRAEEEDLAAVPFLASDNEEEEDEKGNSGSLIR 33 2 O95714;A0A3B3IRP6;A0A0J9YVP0 O95714 HERC2 E3 ubiquitin-protein ligase HERC2 1 IRAEEEDLAAVPFLAS(1)DNEEEEDEKGNSGSLIR 74.733 1.43E-05 61016000 2179.5 1626.7 3462.4 2488 1728.2 1542.3 1313.4 2248.5 2359.9 3076.3 TRUE FALSE 2210.019724 1804.308607 2588.274298 2328.430816 1963.610099 1815.80525 1562.610794 2057.47589 2586.578939 2449.348371 0.90228885 0.73664842 1.056719545 0.950632765 0.801686735 0.741342175 0.637970005 0.840009496 1.056027378 1 11.25818227 -8.754299179 23.18746685 1.028013742 0.830896387 0.322713236 0.112720362 76.43482978 248235.4186 0.087790185 0.031459169 1.76E-09 8.754299179 -0.197117355 IREEYPDR ddPTM_K562_Paclitaxel_30min_R1 3 IREEYPDR 8 1 Q13885;Q9BVA1;P68371;Q5ST81;Q5SQY0;Q3ZCM7;A0A075B736;Q9H4B7;CON__ENSEMBL:ENSBTAP00000025008;Q5JP53;P07437;A6NNZ2 Q13885;Q5JP53;A6NNZ2 TUBB2A;TUBB2B;TUBB4B;TUBB;TUBB8;TUBB1 Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4B chain;Tubulin beta-8 chain;Tubulin beta-1 chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334 0 ;; 140.14 0.00018355 551535000 9247.5 8560.9 10889.5 9015.4 8323.3 7676.3 8259 9730.2 7591 10131.2 FALSE TRUE 9376.993531 9495.608013 8140.311045 8437.192595 9457.074375 9037.584024 9826.102135 8903.558776 8320.149467 8066.455879 1.162467591 1.17717225 1.009155838 1.045960298 1.172395227 1.120390933 1.218143666 1.103775798 1.03145044 1 12.97771923 -8.784885861 3.39121326 1.004586076 1.126770409 0.368398424 0.059041496 0.272894449 6.035862139 0.058623713 0.016413316 1.64E-09 8.784885861 0.122184333 IRLS(ph)PEPWTPETGLVTDAFK ddPTM_K562_Paclitaxel_30min_R1 1 IRLSPEPWTPETGLVTDAFK 20 1 O95573 O95573 ACSL3 Long-chain-fatty-acid--CoA ligase 3 1 IRLS(0.991)PEPWT(0.008)PET(0.001)GLVTDAFK 70.704 0.0082674 5144500 711.05 816.48 1063.1 686.35 625.78 558.17 652.67 783.72 756.04 1261.6 TRUE FALSE 721.0068938 905.6260476 794.7072567 642.330583 711.0218305 657.1536124 776.5107253 717.1380942 828.6610201 1004.485227 0.717787454 0.901582246 0.79115873 0.639462448 0.707846976 0.65421929 0.77304345 0.713935929 0.824960883 1 9.972240632 -9.090891742 3.270347604 0.999877605 0.739119178 0.563748146 0.070463097 0.300785393 7.298459176 0.073254406 0.019450175 8.11E-10 9.090891742 -0.260758427 IRQEQTEDCPPS(ph)SPSR ddPTM_K562_Paclitaxel_30min_R1 1 IRQEQTEDCPPSSPSR 16 1 Q15008-4;C9J7B7;C9J0E9 Q15008-4 PSMD6 26S proteasome non-ATPase regulatory subunit 6 1 IRQEQTEDCPPS(0.497)S(0.497)PS(0.006)R 91.845 0.0063561 9962900 1372.8 1091.6 1873.8 1367.3 1217.8 1320.3 1186.5 1578.7 1207 1610 TRUE FALSE 1392.023435 1210.78458 1400.736015 1279.607498 1383.684978 1554.436667 1411.632181 1444.579581 1322.937743 1281.881116 1.085922413 0.94453734 1.092719128 0.998226342 1.079417553 1.212621551 1.101219265 1.126921649 1.03202842 1 10.32404675 -6.973046109 9.618163148 1.10766894 1.029827032 0.160928956 0.066420734 0.476071817 160.8438067 0.019893993 0.02245521 1.06E-07 6.973046109 -0.077841908 IRS(ph)TSTPNVHMVSTTAPMDSNLIQLTGQSFSTDAAGSR ddPTM_K562_Paclitaxel_30min_R1 1 IRSTSTPNVHMVSTTAPMDSNLIQLTGQSFSTDAAGSR 38 1 P10398;Q96II5 P10398 ARAF Serine/threonine-protein kinase A-Raf 1 IRS(0.15)T(0.15)S(0.15)T(0.15)PNVHMVS(0.125)T(0.125)T(0.125)APMDS(0.024)NLIQLT(0.001)GQSFSTDAAGSR 42.661 0.009591 20125000 0 0 180.61 0 50.914 76.435 0 144.98 0 226.71 TRUE FALSE 0 0 135.0127717 0 57.84934878 89.98967405 0 132.6630441 0 180.5063776 0 0 0.747966768 0 0.320483684 0.498540136 0 0.734949346 0 1 7.495906 -15 0.225145881 4.76324275 0.185719852 0.362431177 0.294526898 169.5251599 1.697601488 290.4415714 0.510923697 1.00E-15 15 -4.577522898 IRSS(ph)VGPVR ddPTM_K562_Paclitaxel_30min_R1 1 IRSSVGPVR 9 1 Q9NTI2 Q9NTI2 ATP8A2 Phospholipid-transporting ATPase IB 1 IRS(0.154)S(0.846)VGPVR 78.342 0.025921 85065000 2092.3 2093.7 2483.2 2166.3 1865.9 2142.7 2057.6 2455 2022.8 2784.6 TRUE FALSE 2121.598655 2322.297246 1856.285448 2027.363214 2120.06717 2522.67776 2448.018859 2246.432426 2217.098978 2217.096992 0.956926406 1.04744955 0.837259468 0.914422428 0.956235644 1.137829229 1.104155059 1.013231462 1.000000896 1 11.11445617 -7.099260697 7.786409268 1.054970691 0.938985285 0.424785436 0.063338949 0.294844418 20.60735003 0.022181169 0.022219408 7.96E-08 7.099260697 -0.115985406 IRSTS(ph)TPNVHMVSTTAPMDSNLIQLTGQSFSTDAAGSR ddPTM_K562_Paclitaxel_30min_R1 1 IRSTSTPNVHMVSTTAPMDSNLIQLTGQSFSTDAAGSR 38 1 P10398;Q96II5 P10398 ARAF Serine/threonine-protein kinase A-Raf 1 IRS(0.198)T(0.198)S(0.265)T(0.265)PNVHMVS(0.009)T(0.022)T(0.022)APMDS(0.022)NLIQLTGQSFSTDAAGSR 72.539 5.74E-07 24798000 456.32 272.98 375.01 529.06 416.34 454.46 498.01 540.89 472.17 810.39 TRUE FALSE 462.7098879 302.7848796 280.3340874 495.1284596 473.0525567 535.0521001 592.5047977 494.9380184 517.5240382 645.2320732 0.717121648 0.469265079 0.434470168 0.767364922 0.733151026 0.829239776 0.918281689 0.767069771 0.802074261 1 9.333674343 -6.413916518 4.145733502 0.828016746 0.534446426 0.642809522 0.099962803 0.146918595 4.3021123 0.028899861 0.04359348 3.86E-07 6.413916518 -0.29357032 IRTPS(ph)GEFLER ddPTM_K562_Paclitaxel_30min_R1 1 IRTPSGEFLER 11 1 B3KT28;B1ANM7;Q9UNN5-2;Q9UNN5 B3KT28 FAF1 FAS-associated factor 1 1 IRT(0.041)PS(0.959)GEFLER 138.2 0.0022216 224390000 2244.9 1992 2644.8 2203.9 2399.2 2202.7 1959.5 2536.4 1781.9 2984.4 TRUE FALSE 2276.335526 2209.493297 1977.08753 2062.551718 2726.011659 2593.317918 2331.304896 2320.916988 1953.059457 2376.177642 0.957982049 0.929851901 0.832045338 0.868012425 1.147225532 1.091382173 0.981115576 0.976743888 0.821933269 1 11.21442698 IS(ph)LNY(ph)PPGVFT(ph)S(ph)PVLVQLK ddPTM_K562_Paclitaxel_30min_R1 1 ISLNYPPGVFTSPVLVQLK 19 0 D6RB49;A0A1W2PR94;Q6ZMT9-2;Q6ZMT9 D6RB49 DTHD1 Death domain-containing protein 1 4 IS(1)LNY(1)PPGVFT(1)S(1)PVLVQLK 63.376 0.010285 18049000 676.4 574.39 1182 818.9 782.82 803.63 799.29 918.34 562.51 984.43 TRUE FALSE 685.8716869 637.1038427 883.5894812 766.3794193 889.4533373 946.142497 950.9511049 840.3212849 616.5415989 783.8026256 0.875056633 0.812837087 1.127311203 0.977770926 1.134792495 1.207118305 1.213253278 1.07210828 0.78660313 1 9.614346596 -5.758604588 24.99989818 1.077211299 0.843946786 0.348871501 0.119780483 76.55179879 675071.9347 0.032224239 0.077794164 1.74E-06 5.758604588 -0.233264513 IS(ph)PGSPGLPRTVWFEVVNMDFS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 ISPGSPGLPRTVWFEVVNMDFSR 23 1 O94901-7 O94901-7 2 IS(0.868)PGS(0.132)PGLPRT(0.001)VWFEVVNMDFS(1)R 53.522 0.024946 0 1261.6 1529.1 2138.1 1356.9 1220.5 839.32 1021.7 1269.1 1411.7 1562.3 TRUE FALSE 1279.266292 1696.052309 1598.310211 1269.874507 1386.752763 988.1616174 1215.562241 1161.282034 1547.300093 1243.902402 1.028429795 1.363493073 1.28491609 1.020879536 1.11484049 0.794404461 0.977216733 0.933579701 1.243907954 1 10.28065758 -6.297698667 7.253961376 1.002565052 1.239360287 0.341984326 0.134864774 0.236355595 39.98964525 0.03788137 0.05716352 5.04E-07 6.297698667 0.236795235 IS(ph)PIQKPQGLDPVEILQER ddPTM_K562_Paclitaxel_30min_R1 1 ISPIQKPQGLDPVEILQER 19 1 A0A0U1RRJ8;A0A0U1RQZ9;F6VDE0;P51531-2;P51531 A0A0U1RRJ8 SMARCA2 Probable global transcription activator SNF2L2 1 IS(1)PIQKPQGLDPVEILQER 67.252 0.016582 9386800 1028.6 859.03 1962.9 1150.6 925.3 921.54 1048.4 1232.3 679.46 1666.2 TRUE FALSE 1043.003574 952.8218005 1467.341618 1076.805666 1051.341525 1084.96218 1247.328427 1127.608423 744.7251689 1326.627525 0.786206794 0.718228578 1.106069028 0.81168651 0.792491868 0.817834817 0.940225047 0.849981175 0.561367192 1 10.37354765 -8.57204055 24.99999596 0.755680478 0.855527719 0.034335781 0.140842833 307.6719665 156453.361 0.091209941 0.034474099 2.68E-09 8.57204055 0.099847241 IS(ph)PSSLSNNYNNMNNR ddPTM_K562_Paclitaxel_30min_R1 2 ISPSSLSNNYNNMNNR 16 0 Q9Y4E8 Q9Y4E8 USP15 Ubiquitin carboxyl-terminal hydrolase 15 1 IS(0.896)PS(0.1)S(0.004)LSNNYNNMNNR;IS(1)PSSLSNNYNNMNNR 271.45 2.45E-112 121222000 1970.63 1692.36 2623.2 1996.43 1863.38 1900.2 2078.2 2348.21 1411.15 2329.7 TRUE FALSE 1998.2249 1877.137588 1960.940717 1868.387915 2117.203903 2237.17379 2472.527601 2148.714903 1546.697263 1854.905861 1.077264858 1.011985367 1.057164548 1.007268323 1.141407738 1.206084814 1.332966623 1.158395662 0.83384138 1 10.85713025 -6.770571249 24.80798985 1.135776805 1.037871371 0.057868341 0.125499567 410.0630448 1113989.954 0.040466947 0.046524042 1.70E-07 6.770571249 -0.097905435 IS(ph)SKSPGHMVILDQTK ddPTM_K562_Paclitaxel_30min_R1 1 ISSKSPGHMVILDQTK 16 1 Q9NWH9-3;Q9NWH9 Q9NWH9-3 SLTM SAFB-like transcription modulator 1 IS(0.333)S(0.333)KS(0.333)PGHMVILDQTK 92.269 0.0051287 69230000 7415.2 5386.2 16425 8215.3 5785.7 5224.5 4844.9 8777 5929 11261 TRUE FALSE 7519.035678 5974.283531 12278.30561 7688.407428 6573.810293 6150.991719 5764.194483 8031.339066 6498.506941 8966.002019 0.838616327 0.666326365 1.369429271 0.85750677 0.733193042 0.686035058 0.642894622 0.895754769 0.724794276 1 13.13024911 IS(ph)SLGSQAMQMER ddPTM_K562_Paclitaxel_30min_R1 1 ISSLGSQAMQMER 13 0 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 IS(0.549)S(0.451)LGSQAMQMER 99.927 0.0085911 23421000 778.08 668.05 764.69 614.34 577.15 506.67 544.36 996.76 723 1004.7 TRUE FALSE 788.9755206 740.9899582 571.6345519 574.9389821 655.7676012 596.5208105 647.6494683 912.0790164 792.4473804 799.9415885 0.986291414 0.926305081 0.714595366 0.718726205 0.819769356 0.74570546 0.809620949 1.14018202 0.990631556 1 9.643750848 -8.247495863 24.68713097 1.049055085 0.811082407 0.571769771 0.089604385 469.4296137 831131.6832 0.04543229 0.026052234 5.66E-09 8.247495863 -0.237972677 IS(ph)SPMHPSAGGQR ddPTM_K562_Paclitaxel_30min_R1 1 ISSPMHPSAGGQR 13 0 O00267-2;O00267 O00267-2 SUPT5H Transcription elongation factor SPT5 1 IS(0.845)S(0.155)PMHPSAGGQR 78.902 0.025559 12553000 1217.4 963.97 1670.2 1022.5 1083 1076 783.5 1139.3 1208.6 1619.2 TRUE FALSE 1234.447356 1069.219505 1248.537353 956.9214265 1230.522935 1266.813492 932.1650349 1042.509354 1324.69143 1289.206151 0.957525183 0.829362708 0.968454387 0.74225633 0.954481123 0.982630661 0.723053512 0.808644415 1.027524907 1 10.33226726 -8.773387736 24.99454681 1.01376258 0.869982122 0.287865297 0.089935156 321.3031388 672106.5508 0.08379942 0.02231705 1.69E-09 8.773387736 -0.143780458 ISAPELLLHS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 3 ISAPELLLHSPAR 13 0 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 ISAPELLLHS(1)PAR;ISAPELLLHS(1)PAR;ISAPELLLHS(1)PAR 136.36 9.37E-05 83652000 11061.2 10520.1 14682.6 12544.3 10499 11472.1 11179.7 13980.1 9900.7 15458 TRUE FALSE 11216.09093 11668.72009 10975.79604 11739.76474 11929.14155 13506.51586 13300.98971 12792.40324 10851.70647 12307.65111 0.911310438 0.948086681 0.891786413 0.953859078 0.969245995 1.097408086 1.080709031 1.039386242 0.881704102 1 13.58726783 -6.884929186 2.865604646 1.026301914 0.923479855 0.365382927 0.057314577 0.283278858 4.694751746 0.019764723 0.023020479 1.30E-07 6.884929186 -0.102822058 ISDEDWDIIHR ddPTM_K562_Paclitaxel_30min_R1 2 ISDEDWDIIHR 11 0 A0A2R8YDT8;A0A2R8YF45;E7ER27;A0A2R8YD50;P51659-3;P51659;P51659-2 A0A2R8YDT8 HSD17B4 Peroxisomal multifunctional enzyme type 2;(3R)-hydroxyacyl-CoA dehydrogenase;Enoyl-CoA hydratase 2 0 ; 151.98 0.00085762 27236000 8745.1 8812.8 12078.1 11152.1 8700.4 8926.4 8900.2 11868.6 9318.6 12465.1 FALSE TRUE 8867.558381 9775.011307 9028.834275 10436.85422 9885.541779 10509.37171 10588.96649 10860.28835 10213.69317 9924.705778 0.893483251 0.984916987 0.909733193 1.051603388 0.996053888 1.058910152 1.066930015 1.094268041 1.02911798 1 13.27680862 -6.314901276 1.074786834 1.055147238 0.919010258 0.610518687 0.03915425 0.366188566 0.809718311 0.014219059 0.037687245 4.84E-07 6.314901276 -0.13613698 ISDYFEFAGGSAPGTS(ph)PGR ddPTM_K562_Paclitaxel_30min_R1 2 ISDYFEFAGGSAPGTSPGR 19 0 Q86UE8-2;Q86UE8 Q86UE8-2 TLK2 Serine/threonine-protein kinase tousled-like 2 1 ISDYFEFAGGSAPGT(0.005)S(0.995)PGR;ISDYFEFAGGSAPGT(0.238)S(0.762)PGR 290.18 2.62E-161 84246000 5967.8 6368.5 8108.7 7372.9 6208 5603.2 5920.2 7040.2 6373.1 8017.9 TRUE FALSE 6051.367612 7063.834367 6061.558398 6900.035194 7053.634702 6596.848847 7043.527044 6442.091066 6985.264731 6383.847579 0.947918561 1.106516764 0.9495149 1.080858387 1.104919034 1.033365657 1.103335717 1.009123571 1.094209197 1 12.64021049 -5.241740196 23.96569677 1.053957715 0.947918388 0.27552358 0.05137645 3431.399782 4174473.982 0.012058457 0.430666848 5.73E-06 5.241740196 -0.106039328 ISDYFEYQGGNGS(ph)SPVR ddPTM_K562_Paclitaxel_30min_R1 1 ISDYFEYQGGNGSSPVR 17 0 Q9UKI8;B3KRP1;Q9UKI8-5;Q9UKI8-2;Q9UKI8-4;C9JWT6 Q9UKI8 TLK1 Serine/threonine-protein kinase tousled-like 1 1 ISDYFEYQGGNGS(0.877)S(0.123)PVR 145.8 1.93E-08 236850000 1953 1718.9 2332.2 2289.1 1724.2 1652.8 1460.6 2112.5 1267.6 2549.2 TRUE FALSE 1980.348026 1906.575315 1743.407266 2142.287372 1959.065231 1945.900874 1737.741225 1933.029939 1389.358644 2029.671641 0.975698722 0.939351606 0.858960253 1.055484704 0.96521289 0.958726936 0.856168648 0.952385549 0.684523849 1 10.98703063 -7.756275234 23.92864948 0.869301631 0.958150694 0.182917109 0.088501134 124.7137273 577880.3365 0.033163637 0.024859852 1.75E-08 7.756275234 0.088849063 ISDYFEYQGGNGSS(ph)PVR ddPTM_K562_Paclitaxel_30min_R1 1 ISDYFEYQGGNGSSPVR 17 0 Q9UKI8;B3KRP1;Q9UKI8-5;Q9UKI8-2;Q9UKI8-4;C9JWT6 Q9UKI8 TLK1 Serine/threonine-protein kinase tousled-like 1 1 ISDYFEYQGGNGS(0.177)S(0.823)PVR 199.31 2.19E-13 260540000 1977.9 2082.6 2571.4 2352.5 2007.5 1690.7 1910.5 2451.8 1684.8 2706.3 TRUE FALSE 2005.596702 2309.985311 1922.218267 2201.621179 2280.955487 1990.521906 2273.007402 2243.504286 1846.632568 2154.754574 0.930777327 1.072041029 0.892082231 1.021750322 1.058568579 0.923781265 1.054879952 1.041187852 0.857003665 1 11.07330784 -4.890771843 10.76278296 0.992915457 4.67E-05 0.060155446 0.071443382 305868.1924 766312.1643 0.016836986 6875780.766 1.29E-05 4.890771843 -0.992868709 ISEGLPTPT(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 ISEGLPTPTK 10 0 P06400;A0A3B3IS71 P06400 RB1 Retinoblastoma-associated protein 1 ISEGLPT(0.414)PT(0.586)K 116.24 0.0090896 16302000 2919.5 2591 5870.4 3787.7 2886.9 2487 2163.1 3263.2 2199.2 3645 TRUE FALSE 2960.382007 2873.894142 4388.344916 3544.773875 3280.144656 2928.034531 2573.536933 2985.970792 2410.442986 2902.146999 1.020066181 0.990264843 1.512102908 1.221431539 1.130247591 1.008920131 0.886770013 1.028883372 0.830572327 1 11.50290488 -7.273487919 2.512530037 0.939638507 1.193079253 0.392507205 0.14192842 0.324044188 4.044311235 0.057454094 0.052733816 5.33E-08 7.273487919 0.253440747 ISGLIYEETR ddPTM_K562_Paclitaxel_30min_R1 3 ISGLIYEETR 10 0 P62805 P62805 HIST1H4A Histone H4 0 ;; 125.75 0.01097 123955000 4640.7 4902.8 7376.2 4844.3 2682.89 3865.9 4191.2 5820.7 3781.5 7044.1 FALSE TRUE 4705.684118 5438.104284 5513.987082 4533.60828 3048.34504 4551.463085 4986.45832 5326.195203 4144.729971 5608.508553 0.839025932 0.96961683 0.983146772 0.808344721 0.54352151 0.811528242 0.889088119 0.949663382 0.739007515 1 12.45340146 -6.276936089 22.56363506 0.809052542 0.934498532 0.140761639 0.122789523 398.5519197 580302.0156 0.036307793 0.054151903 5.29E-07 6.276936089 0.12544599 ISHLSGSGS(ph)GDER ddPTM_K562_Paclitaxel_30min_R1 1 ISHLSGSGSGDER 13 0 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 ISHLS(0.001)GS(0.009)GS(0.99)GDER 116.9 0.0028152 19288000 749.97 763.22 1196.6 804.95 749.92 716.2 820.05 1102.7 878.85 1095.9 TRUE FALSE 760.4718939 846.5509406 894.5035306 753.3241098 852.0718003 843.2080141 975.6502066 1009.018752 963.2674693 872.5549784 0.871546106 0.970197823 1.025154349 0.86335432 0.976525057 0.96636663 1.118153275 1.156395616 1.10396192 1 9.769102226 -7.718109694 5.040949664 1.108177823 0.946316293 0.605071163 0.058729695 0.124330366 7.136297562 0.023004407 0.017120896 1.91E-08 7.718109694 -0.16186153 ISHTPQTPLYT(ph)PER ddPTM_K562_Paclitaxel_30min_R1 1 ISHTPQTPLYTPER 14 0 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 1 ISHTPQT(0.053)PLY(0.001)T(0.946)PER 98.077 0.0046186 0 506.53 614.51 677.63 472.57 582.17 563.21 582.21 593.81 466.54 758.84 TRUE FALSE 513.6229828 681.6042799 506.5539257 442.2614753 661.4714102 663.0873856 692.6813082 543.3621341 511.3532516 604.1879915 0.850104587 1.128132782 0.838404491 0.731993157 1.094810588 1.097485212 1.146466527 0.899326272 0.846347923 1 9.2388537 -5.783893067 24.99880387 0.96194951 0.989119212 0.007398359 0.139855255 2250.977256 2506122.874 0.039529275 0.082378462 1.64E-06 5.783893067 0.027169701 ISNLS(ph)PEEEQGLWK ddPTM_K562_Paclitaxel_30min_R1 2 ISNLSPEEEQGLWK 14 0 F5GX09;Q5HYJ3-3;Q5HYJ3-2;Q5HYJ3 F5GX09 FAM76B Protein FAM76B 1 IS(0.123)NLS(0.877)PEEEQGLWK;ISNLS(1)PEEEQGLWK 178.99 3.31E-06 117089000 6533.9 5216.1 12122.3 7551.9 5122 5187.6 4464.3 6593 7031.9 8315.8 TRUE FALSE 6625.394759 5785.611438 9061.875438 7067.554935 5819.703116 6107.548022 5311.37762 6032.883498 7707.345414 6621.035395 1.000658411 0.873822762 1.368649297 1.067439534 0.878971757 0.922446061 0.802197436 0.911169196 1.164069508 1 12.69284113 -6.691899154 7.38180702 0.933820166 1.085189717 0.160326894 0.145163006 0.408812059 36.55294831 0.044513861 0.057383454 2.03E-07 6.691899154 0.15136955 ISQAPQVSISRS(ph)KS(ph)Y(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 ISQAPQVSISRSKSYR 16 2 Q96QS3 Q96QS3 ARX Homeobox protein ARX 3 ISQAPQVS(0.006)IS(0.046)RS(0.963)KS(0.991)Y(0.993)R 77.324 0.020956 0 785.77 1168.3 1293.6 1111.9 1032.4 1134.1 969.47 1328.1 867.85 1230.1 TRUE FALSE 796.7732043 1295.858945 967.014681 1040.587711 1173.030359 1335.216711 1153.421872 1215.269615 951.2108702 979.4049448 0.813527855 1.323108436 0.987349192 1.062469325 1.197696994 1.363293823 1.177676177 1.240824464 0.971213057 1 9.93576167 -5.242330628 24.17749886 1.156256382 0.813527373 0.360831134 0.132670555 3130.463101 3960750.222 0.032933455 1.138271504 5.72E-06 5.242330628 -0.342729009 ISREPEPAAGPQAEESATVSAPAPMS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 3 ISREPEPAAGPQAEESATVSAPAPMSPTR 29 1 Q9BWG6-2;Q9BWG6 Q9BWG6-2 SCNM1 Sodium channel modifier 1 1 ISREPEPAAGPQAEESAT(0.001)VS(0.008)APAPMS(0.907)PT(0.083)R;ISREPEPAAGPQAEESATVSAPAPMS(0.955)PT(0.045)R;ISREPEPAAGPQAEESATVSAPAPMS(0.953)PT(0.047)R 172.28 1.84E-37 327486000 5172.5 5021.7 6958.5 5807.4 5041.9 4383.1 4712.5 6248.7 5812 5814.7 TRUE FALSE 5244.930959 5569.986188 5201.740613 5434.939357 5728.69214 5160.381243 5606.672274 5717.833932 6370.268569 4629.660948 1.132897423 1.203108878 1.123568372 1.17393896 1.237389132 1.114634808 1.211033019 1.235043774 1.375968703 1 12.17669083 -7.982816594 23.93912718 1.227911439 1.167511892 0.026027095 0.092753388 368.8781573 513901.609 0.03665392 0.02470334 1.04E-08 7.982816594 -0.060399547 ISREPEPAAGPQAEESATVSAPAPMS(ph)PTRR ddPTM_K562_Paclitaxel_30min_R1 2 ISREPEPAAGPQAEESATVSAPAPMSPTRR 30 2 Q9BWG6-2;Q9BWG6 Q9BWG6-2 SCNM1 Sodium channel modifier 1 1 ISREPEPAAGPQAEESATVSAPAPMS(0.5)PT(0.5)RR;ISREPEPAAGPQAEESATVSAPAPMS(0.84)PT(0.16)RR 118.52 4.28E-13 37543000 1130.48 995.53 1511.93 999.67 790.18 1204.95 771.47 1347.46 1327.87 1088.32 TRUE FALSE 1146.310208 1104.225332 1130.224572 935.5556406 897.8158939 1418.630964 917.8524052 1232.984862 1455.417847 866.5197866 1.322889824 1.274322121 1.304326329 1.079670257 1.036117014 1.637159343 1.059239984 1.422915993 1.67961294 1 9.759088883 -7.236289845 24.93605729 1.367433902 1.206127551 0.113180595 0.218196935 1716.350266 1701782.99 0.07096842 0.070944432 5.80E-08 7.236289845 -0.161306351 ISS(ph)PMHPSAGGQR ddPTM_K562_Paclitaxel_30min_R1 1 ISSPMHPSAGGQR 13 0 O00267-2;O00267 O00267-2 SUPT5H Transcription elongation factor SPT5 1 IS(0.111)S(0.889)PMHPSAGGQR 116.98 0.0027929 6930900 876.76 489.65 1124.8 816.25 632.79 644.54 539.3 934.23 756.85 936.31 TRUE FALSE 889.037345 543.1116429 840.8303286 763.8993784 718.9867112 758.8401192 641.6293597 854.8613302 829.5488242 745.489508 1.192555141 0.72853023 1.127890225 1.024695009 0.964449135 1.017908517 0.860681945 1.146711417 1.112757209 1 9.542044238 -8.289616436 24.94010406 1.097300734 0.985138578 0.110727702 0.12647188 1415.112925 1252537.323 0.064605449 0.031045245 5.13E-09 8.289616436 -0.112162157 ISTASQVSQGTGS(ph)PVPK ddPTM_K562_Paclitaxel_30min_R1 2 ISTASQVSQGTGSPVPK 17 0 Q9ULM3 Q9ULM3 YEATS2 YEATS domain-containing protein 2 1 ISTASQVSQGTGS(1)PVPK;ISTASQVSQGT(0.009)GS(0.991)PVPK 261.76 1.99E-94 32778000 5398.7 4630.7 9739.4 6246 4322.5 3694.2 4436.4 6991.3 3817.9 7491.4 TRUE FALSE 5474.298456 5136.295486 7280.568015 5845.409516 4911.297681 4349.314501 5278.18374 6397.345427 4184.626354 5964.648568 0.917790611 0.861122902 1.220619779 0.98000904 0.823401014 0.729182022 0.884911103 1.072543563 0.701571317 1 12.54222142 -6.672377558 6.387726492 0.866404434 1.003702138 0.172672109 0.135460104 0.382992195 22.52472987 0.041049672 0.052987839 2.13E-07 6.672377558 0.137297703 ISTS(ph)GQIRS(ph)VIRRS(ph)WESGHAHPMSR ddPTM_K562_Paclitaxel_30min_R1 1 ISTSGQIRSVIRRSWESGHAHPMSR 25 3 A0A1B0GTU4;A0A1B0GU60;A0A1B0GWE7 A0A1B0GTU4 3 IS(0.03)T(0.222)S(0.807)GQIRS(0.942)VIRRS(0.486)WES(0.486)GHAHPMS(0.028)R 50.055 0.021717 0 137.03 277.05 345.16 195.84 215.55 298.99 225.59 265.1 268.61 156.23 TRUE FALSE 138.9488428 307.2992559 258.0200891 183.2796989 244.9115593 352.0116785 268.3945248 242.5781003 294.4111907 124.3902402 1.117039749 2.470445071 2.074279209 1.473425074 1.968896907 2.829897891 2.157681538 1.950137726 2.366835132 1 6.958729485 -5.245333506 23.88724909 2.072784799 1.117038389 0.238492325 0.485897489 2347.064402 3480919.886 0.117623629 2.800187565 5.68E-06 5.245333506 -0.95574641 ISYIPDEEVSS(ph)PSPPQR ddPTM_K562_Paclitaxel_30min_R1 3 ISYIPDEEVSSPSPPQR 17 0 F8W930;Q9Y6M1-5;Q9Y6M1-6;Q9Y6M1-3;Q9Y6M1-4;Q9Y6M1-1;Q9Y6M1 F8W930 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 1 ISYIPDEEVS(0.017)S(0.971)PS(0.012)PPQR;ISYIPDEEVS(0.226)S(0.769)PS(0.005)PPQR;ISYIPDEEVS(0.216)S(0.734)PS(0.05)PPQR 224.86 7.43E-31 176140000 6561.5 6518.6 8898.5 7444.1 6058.2 6162.6 5888.3 7253.5 5362.4 7927.6 TRUE FALSE 6653.381244 7230.322792 6651.96362 6966.668745 6883.429406 7255.450583 7005.574186 6637.2699 5877.48248 6311.950768 1.054092703 1.145497336 1.053868109 1.103726724 1.090539147 1.149478323 1.109890499 1.051540188 0.931167351 1 12.62387024 -8.569279416 4.115121297 0.967264957 1.101629597 0.713609885 0.033924476 0.107832421 3.862342565 0.024035533 0.008511951 2.70E-09 8.569279416 0.13436464 ISYIPDEEVSSPS(ph)PPQR ddPTM_K562_Paclitaxel_30min_R1 1 ISYIPDEEVSSPSPPQR 17 0 F8W930;Q9Y6M1-5;Q9Y6M1-6;Q9Y6M1-3;Q9Y6M1-4;Q9Y6M1-1;Q9Y6M1 F8W930 IGF2BP2 Insulin-like growth factor 2 mRNA-binding protein 2 1 ISYIPDEEVSSPS(1)PPQR 309.33 2.64E-203 60407000 2168.5 2007.5 2599.9 2080.6 1826.4 1598.8 1745.1 2531.8 1551.2 2248.1 TRUE FALSE 2198.86569 2226.685639 1943.52309 1947.159628 2075.186601 1882.324732 2076.223615 2316.707787 1700.199691 1789.935986 1.228460519 1.244002946 1.08580592 1.087837578 1.159363585 1.05161567 1.159942943 1.294296447 0.949866199 1 10.80569228 -9.727689748 0.019978768 8.54E-09 2.149971118 0.262486173 0.090281163 1090.113476 7.858109782 447.3859175 397.0452045 1.87E-10 9.727689748 2.14997111 ISYT(ph)PPES(ph)PVPSYASSTPLHVPVPR ddPTM_K562_Paclitaxel_30min_R1 2 ISYTPPESPVPSYASSTPLHVPVPR 25 0 P41212 P41212 ETV6 Transcription factor ETV6 2 IS(0.083)Y(0.209)T(0.741)PPES(0.964)PVPS(0.002)Y(0.001)ASSTPLHVPVPR;IS(0.042)Y(0.093)T(0.873)PPES(0.993)PVPSYASSTPLHVPVPR 101.74 2.29E-05 105568000 4731.7 4307.3 5701.6 5018.3 4662.9 4449.1 3789.8 4592.8 4848.2 5545.3 TRUE FALSE 4797.958399 4777.58558 4262.160564 4696.448699 5298.065924 5238.085417 4508.894766 4202.612973 5313.891272 4415.164816 1.086699727 1.082085444 0.965345744 1.06370858 1.199970136 1.186385024 1.021229094 0.951858684 1.203554452 1 12.10825158 -4.830953903 16.20126932 1.075873286 7.021145682 0.001449515 0.089688698 2500.738312 240843.1102 0.022425756 2707.728803 1.48E-05 4.830953903 5.945272396 ISYT(ph)PPESPVPSYASSTPLHVPVPR ddPTM_K562_Paclitaxel_30min_R1 1 ISYTPPESPVPSYASSTPLHVPVPR 25 0 P41212 P41212 ETV6 Transcription factor ETV6 1 IS(0.149)Y(0.008)T(0.804)PPES(0.039)PVPSYASSTPLHVPVPR 101.93 1.32E-05 23675000 1723.6 1783.6 2653 2257.5 1930.2 1750 1407.9 1929.7 2280.9 2188.5 TRUE FALSE 1747.735718 1978.33948 1983.217338 2112.714054 2193.125919 2060.337929 1675.041675 1765.75994 2499.990636 1742.482499 1.00301479 1.135356872 1.138156245 1.212473615 1.25862149 1.182415278 0.961296126 1.013358781 1.434729266 1 10.76692845 -11.12592127 4.395765865 0.999981358 1.144704288 0.101972979 0.1319859 98919311.61 1.928409985 20833.53999 0.032132222 7.48E-12 11.12592127 0.14472293 ISYTPPES(ph)PVPSYASSTPLHVPVPR ddPTM_K562_Paclitaxel_30min_R1 1 ISYTPPESPVPSYASSTPLHVPVPR 25 0 P41212 P41212 ETV6 Transcription factor ETV6 1 IS(0.036)Y(0.042)T(0.21)PPES(0.713)PVPSYASSTPLHVPVPR 98.21 1.68E-05 23017000 1387.8 1209.3 1503.5 1538.7 1074.9 1075.5 951.9 1271.8 1296 1308.8 TRUE FALSE 1407.233482 1341.335464 1123.92283 1440.014669 1221.319578 1266.224824 1132.518056 1163.752652 1420.486591 1042.065842 1.350426648 1.287188784 1.078552607 1.381884533 1.172017669 1.215110191 1.086800863 1.116774589 1.363144759 1 10.02523072 -6.959544072 24.99986278 1.163121743 1.263362682 0.190824095 0.115604349 296.4995427 183221.5743 0.035098603 0.039798012 1.10E-07 6.959544072 0.100240939 IT(ph)SPLMEPSSIEK ddPTM_K562_Paclitaxel_30min_R1 1 ITSPLMEPSSIEK 13 0 P28066 P28066 PSMA5 Proteasome subunit alpha type-5 1 IT(0.702)S(0.298)PLMEPSSIEK 170.95 0.0001293 58615000 2754.4 2309.2 4825.3 2876 1974.6 2053.7 2099 3160.1 2374.2 3611 TRUE FALSE 2792.970098 2561.326265 3607.093336 2691.546233 2243.57395 2417.89486 2497.274292 2891.62978 2602.252518 2875.076218 0.971442107 0.890872475 1.2546079 0.936165176 0.78035286 0.840984613 0.868594118 1.005757608 0.905107316 1 11.48938449 -6.508501086 24.96574335 0.892465624 1.036034416 0.252378731 0.10647369 904.16689 1570019.876 0.031105873 0.044229166 3.10E-07 6.508501086 0.143568792 ITAKELLDNQWLT(ph)ST(ph)AY(ph)EKQFPAT(ph)S(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 ITAKELLDNQWLTSTAYEKQFPATSK 26 2 A0A0C4DH60;Q9BYT3-2 A0A0C4DH60 STK33 5 IT(0.001)AKELLDNQWLT(0.545)S(0.545)T(0.915)AY(0.995)EKQFPAT(0.999)S(0.999)K 43.888 0.01821 30489000 865.2 795.16 675.64 954.58 701.27 843.24 1060.1 1080.4 1354.4 1208.6 TRUE FALSE 877.3154694 881.9782579 505.0663258 893.3575113 796.7948466 992.7767743 1261.248441 988.6132764 1484.496172 962.2866566 0.911698675 0.916544204 0.524860573 0.928369426 0.828022337 1.031685068 1.31067851 1.027358396 1.542675627 1 9.910322914 -7.450360401 2.53090753 1.223824259 0.812711411 0.523715362 0.178363096 0.226435551 2.861271859 0.06981254 0.057312237 3.55E-08 7.450360401 -0.411112849 ITDQYR ddPTM_K562_Paclitaxel_30min_R1 1 ITDQYR 6 0 A0A0A0MRA3;A0A0A0MTS7;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13;Q8WZ42-12 A0A0A0MRA3 TTN Titin 0 49.211 0.030163 9471400 7709.1 7266.8 8481 7160.2 7250.6 6891.2 6979.6 7787.4 5623.6 7881.8 FALSE TRUE 7817.051185 8060.213799 6339.866658 6700.97682 8238.254474 8113.257563 8303.942664 7125.811763 6163.771907 6275.484834 1.245648964 1.284396985 1.010259259 1.067802249 1.312767809 1.292849521 1.323235237 1.135499798 0.982198519 1 12.61551121 -8.625698845 3.941433617 0.9922225 1.215523586 0.455186564 0.098720109 0.232917015 6.53227033 0.085580534 0.02861391 2.37E-09 8.625698845 0.223301086 ITEFCHR ddPTM_K562_Paclitaxel_30min_R1 1 ITEFCHR 7 0 I3L398;H0Y3Z3;H7BZ94;P07237 I3L398 P4HB Protein disulfide-isomerase 0 148.33 2.86E-08 4109800 3361.4 3222.6 3921.8 3526.9 3134.7 3628.7 2966.8 3908.4 3715 4450.2 FALSE TRUE 3408.469971 3574.454366 2931.693086 3300.70042 3561.699211 4272.198996 3529.734812 3576.357025 4071.842349 3543.246797 0.961962337 1.008807619 0.827403016 0.931546858 1.00520777 1.20573001 0.996186553 1.009344601 1.14918395 1 11.79085624 -6.951399557 4.747763546 1.071680147 0.93224334 0.431528985 0.075321607 0.197925636 9.769475156 0.024274785 0.02729378 1.12E-07 6.951399557 -0.139436807 ITHS(ph)PDSVK ddPTM_K562_Paclitaxel_30min_R1 1 ITHSPDSVK 9 0 A0A1W2PNZ9;Q15652-3;Q15652;Q15652-2 A0A1W2PNZ9 JMJD1C Probable JmjC domain-containing histone demethylation protein 2C 1 ITHS(0.997)PDS(0.003)VK 154.84 6.24E-06 21364000 3936.9 2956.1 6142.6 3946.6 3079.2 2841.5 2336.2 3379.9 3455.1 4463.7 TRUE FALSE 3992.028746 3278.856995 4591.824659 3693.48274 3498.639171 3345.400128 2779.481754 3092.756398 3786.977793 3553.99549 1.123250932 0.92258333 1.292017582 1.03924801 0.984424201 0.941306802 0.782072392 0.870219562 1.065555036 1 11.79522614 -6.85314066 2.396349566 0.916820177 1.100283471 0.330460417 0.109864551 0.331116472 3.882534029 0.037548187 0.045004285 1.40E-07 6.85314066 0.183463295 ITHS(ph)PTVSQVTER ddPTM_K562_Paclitaxel_30min_R1 5 ITHSPTVSQVTER 13 0 P16157-14;P16157-10;P16157-12;P16157-21;P16157;P16157-3;P16157-16;P16157-5;P16157-8;P16157-13;P16157-4;P16157-7;P16157-6;P16157-9;P16157-11;P16157-15;H0YBS0;A0A2R8Y4B0 P16157-14 ANK1 Ankyrin-1 1 ITHS(1)PTVSQVTER;ITHS(0.997)PT(0.003)VSQVTER;ITHS(1)PTVSQVTER;ITHS(1)PTVSQVTER;IT(0.002)HS(0.995)PT(0.003)VSQVTER 166.52 0.00017638 2976514000 12322.8 11265.33 16125.3 14072.4 11169.5 11040.52 11195.6 13180.5 12795.8 14351.7 TRUE FALSE 12495.35722 12495.31683 12054.26858 13169.85925 12690.975 12998.40121 13319.90666 12060.73425 14024.89376 11426.81566 1.093511752 1.093508217 1.054910566 1.152539749 1.110630938 1.137534864 1.165670914 1.0554764 1.227366764 1 13.4801358 -6.261587644 24.99945509 1.125707166 1.081929984 0.087544788 0.058950695 29.66963954 5003468.215 0.015016852 0.024004015 5.48E-07 6.261587644 -0.043777183 ITIS(ph)SLQDLTLYNPER ddPTM_K562_Paclitaxel_30min_R1 1 ITISSLQDLTLYNPER 16 0 Q9NZI8;Q9NZI8-2 Q9NZI8 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 1 ITIS(0.957)S(0.043)LQDLTLYNPER 283.83 1.59E-132 14049000 835.41 931.28 1310 864.68 877.63 814.07 885.66 1111.7 882.86 1064.9 TRUE FALSE 847.1083175 1032.9603 979.2742981 809.223295 997.1780644 958.4338844 1053.709362 1017.254146 967.6626477 847.8727955 0.999098358 1.218296312 1.15497785 0.954415921 1.176093949 1.130398203 1.242768216 1.199772126 1.141282811 1 9.727704026 ITISS(ph)LQDLTLYNPER ddPTM_K562_Paclitaxel_30min_R1 1 ITISSLQDLTLYNPER 16 0 Q9NZI8;Q9NZI8-2 Q9NZI8 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 1 ITIS(0.057)S(0.943)LQDLTLYNPER 175.19 3.22E-09 13892000 768.04 778.06 620.39 514.4 583.51 504.43 607.99 700.67 646.06 584.41 TRUE FALSE 778.7949296 863.011222 463.7648716 481.4086864 662.9939409 593.883578 723.3529286 641.1437101 708.1169497 465.3069212 1.673723072 1.854713916 0.996685952 1.034604611 1.424852953 1.276326551 1.554571608 1.377894205 1.521827674 1 8.862038836 -5.745055789 24.99984297 1.29387643 1.764218746 0.486893348 0.200681885 218.5410702 333468.1666 0.053338689 0.140221158 1.80E-06 5.745055789 0.470342316 ITLNLAFTCVPSVAMS(ph)CSPAARS(ph)MHTR ddPTM_K562_Paclitaxel_30min_R1 1 ITLNLAFTCVPSVAMSCSPAARSMHTR 27 1 H3BTT6 H3BTT6 MSRB1 2 IT(0.002)LNLAFT(0.002)CVPS(0.03)VAMS(0.548)CS(0.548)PAARS(0.826)MHT(0.044)R 45.579 0.019708 12765000 2233.3 2320.6 3535.9 2970.9 2129.4 2060.2 2258.4 2962.5 1552.7 3332.1 TRUE FALSE 2264.57309 2573.970956 2643.218314 2780.359771 2419.460331 2425.547543 2686.91961 2710.817134 1701.843773 2653.016191 0.853584346 0.970205521 0.996306891 1.047999549 0.911965912 0.914260362 1.012779198 1.021786879 0.64147508 1 11.37341776 -8.717561595 24.99995625 0.82073307 0.968006145 0.26133282 0.097720751 144.8544388 82532.81901 0.06193719 0.023409754 1.92E-09 8.717561595 0.147273076 ITPAHDQNDYEVGQR ddPTM_K562_Paclitaxel_30min_R1 1 ITPAHDQNDYEVGQR 15 0 A0A140T936;P26640 A0A140T936 VARS Valine--tRNA ligase 0 124.62 0.0005412 13497000 823.69 727.51 974.93 980.81 822.77 776.62 848 1177.1 830.53 1147.3 FALSE TRUE 835.2242013 806.9420021 728.7968637 917.9052365 934.8452036 914.3426527 1008.903573 1077.098008 910.3061174 913.4796302 0.914332596 0.883371643 0.797824976 1.004844778 1.023389217 1.000944764 1.104462037 1.179115518 0.996525907 1 9.835228748 -6.451709725 3.835052182 1.057849938 0.867599331 0.652813831 0.060230189 0.14576916 4.123322672 0.018631021 0.027777568 3.53E-07 6.451709725 -0.190250607 ITPHT(ph)SPAPR ddPTM_K562_Paclitaxel_30min_R1 2 ITPHTSPAPR 10 0 Q58A45-4;Q58A45;A0A0C4DFZ9;Q58A45-2;Q58A45-3 Q58A45-4 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit PAN3 1 ITPHT(0.5)S(0.5)PAPR;ITPHT(0.5)S(0.5)PAPR 92.295 0.010883 0 991.17 1111.03 1331.09 1337.2 1200.14 1141.84 1226.38 1315.87 1246.78 1250.42 TRUE FALSE 1005.049438 1232.336013 995.0398668 1251.437977 1363.619387 1344.329292 1459.079203 1204.07863 1366.53879 995.5837176 1.009507709 1.237802498 0.999453737 1.256989196 1.369668228 1.350292565 1.465551492 1.209419769 1.372600582 1 9.959398826 -6.442061648 5.564282551 1.316329487 1.099310356 0.328617233 0.133535172 0.237500385 12.36794499 0.035675291 0.052959317 3.61E-07 6.442061648 -0.217019132 ITQNPVINGNVALSDGHNT(ph)AEEDMEDDTSWR ddPTM_K562_Paclitaxel_30min_R1 1 ITQNPVINGNVALSDGHNTAEEDMEDDTSWR 31 0 A0A669KBL1;Q93009-3;Q93009;H3BMF6;H3BQD1 A0A669KBL1 USP7 Ubiquitin carboxyl-terminal hydrolase 7 1 ITQNPVINGNVALS(0.058)DGHNT(0.938)AEEDMEDDT(0.003)S(0.001)WR 62.57 0.00069182 12612000 274.07 342.96 419.47 483.18 444.96 302.68 423.19 570.65 413.1 749.6 TRUE FALSE 277.9078256 380.4055326 313.5696106 452.1909974 505.5710852 356.3560482 503.4880933 522.1697206 452.7801008 596.8311085 0.465638975 0.637375511 0.525390862 0.757653197 0.847092382 0.597080218 0.843602296 0.874903659 0.758640249 1 9.221178925 -4.847044635 0.179674489 1.012757555 1.17E-12 0.682076809 0.090933525 12.63408148 0.354159304 0.255811491 2.974411987 1.42E-05 4.847044635 -1.012757555 ITS(ph)PLMEPSSIEK ddPTM_K562_Paclitaxel_30min_R1 1 ITSPLMEPSSIEK 13 0 P28066 P28066 PSMA5 Proteasome subunit alpha type-5 1 IT(0.002)S(0.998)PLMEPSSIEK 231.07 5.00E-32 54326000 3710 3229.4 7397.1 4158.2 3260.5 3201.6 2607.6 4402.3 3840.9 5259.8 TRUE FALSE 3761.951446 3581.996813 5529.610619 3891.511663 3704.635301 3769.358807 3102.378487 4028.297137 4209.835607 4187.849873 0.89830141 0.85533076 1.320393707 0.929238579 0.884615116 0.900070184 0.740804609 0.961901037 1.005249886 1 12.03199401 -6.499095098 24.99052069 0.904297775 1.027253371 0.114657883 0.134878065 1540.955545 1619150.304 0.039078817 0.057578527 3.17E-07 6.499095098 0.122955595 ITVGNDHFCVS(ph)TPER ddPTM_K562_Paclitaxel_30min_R1 2 ITVGNDHFCVSTPER 15 0 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 ITVGNDHFCVS(0.653)T(0.347)PER;ITVGNDHFCVS(0.614)T(0.386)PER 119.62 0.00054235 70938000 4858.6 5217.4 6420.2 6062.4 4804.7 5339.8 4314.5 5375.8 5039.1 6076.8 TRUE FALSE 4926.63539 5787.053376 4799.341106 5673.584798 5459.181484 6286.738555 5133.153852 4919.092235 5523.12807 4838.344824 1.018248093 1.196081219 0.991938624 1.172629278 1.128315918 1.299357277 1.060931793 1.016689057 1.141532543 1 12.24029788 -10.94539074 5.651486679 0.999999873 1.115973958 0.124590149 0.090489914 1.44E-07 2.68E-08 0.086922682 0.021081824 1.13E-11 10.94539074 0.115974085 ITVNGDS(ph)SAEAEELANEI ddPTM_K562_Paclitaxel_30min_R1 3 ITVNGDSSAEAEELANEI 18 0 A0A0B4J1W3;Q9BXJ9 A0A0B4J1W3 NAA15 "N-alpha-acetyltransferase 15, NatA auxiliary subunit" 1 IT(0.001)VNGDS(0.743)S(0.257)AEAEELANEI;ITVNGDS(0.77)S(0.23)AEAEELANEI;ITVNGDS(0.5)S(0.5)AEAEELANEI 198.67 3.85E-15 62884600 7649.1 7302.72 10500.4 8287 6269.71 6232.13 6532.41 8422.2 6181.85 10319.6 TRUE FALSE 7756.210999 8100.055666 7849.444153 7755.508911 7123.750649 7337.310752 7771.900696 7706.68154 6775.644314 8216.459855 0.943984531 0.985832805 0.95533165 0.943899082 0.867009731 0.893001473 0.945894075 0.937956453 0.824642782 1 13.00430121 -6.535117762 24.08493488 0.908785184 0.961709217 0.203127429 0.045342274 211.759746 416715.0358 0.012980368 0.016771931 2.92E-07 6.535117762 0.052924033 IVAHAVEVPAVQS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 IVAHAVEVPAVQSPR 15 0 Q96FF9;B5MBX0;H0YCL8 Q96FF9 CDCA5 Sororin 1 IVAHAVEVPAVQS(1)PR;IVAHAVEVPAVQS(1)PR;IVAHAVEVPAVQS(1)PR 164.82 1.07E-05 167415000 7796 6844.2 7309.7 6533.5 6707.8 5643.2 6049.9 8240.9 5153.5 9440.9 TRUE FALSE 7905.168053 7591.472902 5464.27583 6114.470553 7621.515924 6643.942286 7197.836942 7540.784107 5648.516701 7516.839398 1.051661162 1.009928841 0.726937951 0.81343637 1.013925604 0.88387445 0.957561624 1.003185476 0.751448368 1 12.87591046 -6.763536224 24.99998036 0.933730389 0.895911426 0.021714892 0.111597202 298.0288954 3553324.018 0.035516267 0.042287158 1.72E-07 6.763536224 -0.037818963 IVAHAVEVPAVQS(ph)PRRS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 IVAHAVEVPAVQSPRRSPR 19 2 Q96FF9;B5MBX0;H0YCL8 Q96FF9 CDCA5 Sororin 2 IVAHAVEVPAVQS(1)PRRS(1)PR;IVAHAVEVPAVQS(1)PRRS(1)PR;IVAHAVEVPAVQS(1)PRRS(1)PR 97.073 0.0021191 75013000 4122.64 4235.02 5088.6 4530.4 3414.57 3627.06 3948.83 3779.96 3829.15 5338.6 TRUE FALSE 4180.369679 4697.413806 3803.919995 4239.840421 3879.692243 4270.268165 4698.099878 3458.828804 4196.956967 4250.59039 0.983479775 1.105120319 0.894915681 0.997470947 0.912741969 1.004629422 1.105281725 0.813729032 0.987382124 1 12.05344752 -5.758017312 24.99999538 0.96365378 1.044300023 0.141095657 0.078713254 163.6534867 1195520.523 0.019809058 0.048216785 1.75E-06 5.758017312 0.080646243 IVAHAVEVPAVQSPRRS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 IVAHAVEVPAVQSPRRSPR 19 2 Q96FF9;B5MBX0;H0YCL8 Q96FF9 CDCA5 Sororin 1 IVAHAVEVPAVQS(0.069)PRRS(0.931)PR;IVAHAVEVPAVQS(0.195)PRRS(0.805)PR 70.197 0.0087553 61453000 2570.4 2776.6 3297.8 2783.9 2336.3 2555.8 2591.1 2892.8 5862.1 3285.2 TRUE FALSE 2606.39353 3079.758578 2465.229603 2605.353114 2654.543614 3009.035245 3082.747699 2647.038584 6425.180898 2615.674437 0.996451811 1.177424275 0.942483349 0.996054049 1.014860098 1.150385997 1.178567048 1.011990845 2.456414609 1 11.35296727 -8.661994964 22.85365018 1.731367463 1.062122562 0.389798078 0.335114715 5.420371235 1232.893179 0.202441994 0.076515615 2.18E-09 8.661994964 -0.669244901 IVDQIRPDR ddPTM_K562_Paclitaxel_30min_R1 2 IVDQIRPDR 9 1 J3KTA4;P17844-2;P17844;J3QSF1;J3KRZ1;A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 J3KTA4;A0A1X7SBZ2 DDX5;DDX17 Probable ATP-dependent RNA helicase DDX5;Probable ATP-dependent RNA helicase DDX17 0 ; 132.76 0.0055042 13202000 4017 3854.4 4912.3 3954 3660.8 3745.8 3109.3 4072.5 3616.7 4420.7 FALSE TRUE 4073.250394 4275.236427 3672.12911 3700.408137 4159.462938 4410.065036 3699.273443 3726.515705 3964.100195 3519.758913 1.157252668 1.214638994 1.043289953 1.051324318 1.181746546 1.2529452 1.051001939 1.058741748 1.126241965 1 11.7812609 -9.195632734 0.613441853 1.000429576 1.140373599 0.249976551 0.069816823 1.680925844 1.383188738 0.08219178 0.032859684 6.37E-10 9.195632734 0.139944022 IVEPEVVGES(ph)DS(ph)EVEGDAWR ddPTM_K562_Paclitaxel_30min_R1 2 IVEPEVVGESDSEVEGDAWR 20 0 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 IVEPEVVGES(1)DS(1)EVEGDAWR;IVEPEVVGES(1)DS(1)EVEGDAWR 139.51 3.27E-16 6103500 5217.5 5279.6 5601.2 5681.4 5590.4 5582.7 5022.7 6277.9 5401.1 6226.8 TRUE FALSE 5290.561097 5856.044582 4187.107785 5317.020433 6351.907126 6572.71346 5975.731105 5744.55321 5919.899788 4957.774742 1.067124138 1.181184077 0.844553858 1.072461076 1.281201236 1.325738623 1.205325255 1.158695888 1.194063889 1 12.27547701 -6.625126909 6.325760539 1.208478888 1.032220635 0.310898906 0.11135643 0.240441649 12.86302318 0.033244442 0.043035504 2.37E-07 6.625126909 -0.176258253 IVEPEVVGES(ph)DSEVEGDAWR ddPTM_K562_Paclitaxel_30min_R1 6 IVEPEVVGESDSEVEGDAWR 20 0 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 1 IVEPEVVGES(0.705)DS(0.295)EVEGDAWR;IVEPEVVGES(1)DSEVEGDAWR;IVEPEVVGES(0.999)DS(0.001)EVEGDAWR;IVEPEVVGES(0.994)DS(0.006)EVEGDAWR;IVEPEVVGES(0.999)DS(0.001)EVEGDAWR;IVEPEVVGES(0.988)DS(0.012)EVEGDAWR 268.82 3.45E-103 510816000 11878.58 13556.37 19070.63 16423.35 14354.44 13764.66 11580.92 13254.1 10194.4 12853.93 TRUE FALSE 12044.91677 15036.50032 14256.01359 15370.02984 16309.75775 16205.62919 13778.33911 12128.08148 11173.61767 10234.29201 1.176917442 1.469227212 1.392965295 1.50181662 1.593638107 1.583463631 1.34629138 1.185043525 1.091782183 1 13.32112368 -8.361436449 1.914759606 1.04343807 1.459170837 0.680614142 0.112576743 0.219719131 1.468666924 0.093966219 0.034607894 4.35E-09 8.361436449 0.415732767 IVEYS(ph)PPSAPR ddPTM_K562_Paclitaxel_30min_R1 3 IVEYSPPSAPR 11 0 O95696;O95696-2 O95696 BRD1 Bromodomain-containing protein 1 1 IVEYS(0.948)PPS(0.052)APR;IVEYS(0.989)PPS(0.011)APR;IVEYS(0.987)PPS(0.013)APR 130.44 0.00087591 95405000 5376.8 4739.6 6196.1 5158.7 4848.2 4547.8 4369.4 5536.7 4242.4 5865.7 TRUE FALSE 5452.091789 5257.085556 4631.817923 4827.844071 5508.606921 5354.288476 5198.47084 5066.322776 4649.901476 4670.26712 1.167404701 1.125649866 0.991767238 1.033740458 1.17950575 1.146463005 1.113099252 1.084803641 0.995639298 1 12.18928935 -8.704878605 3.883512391 0.995253228 1.105363789 0.388720188 0.054425312 0.255205794 7.405592653 0.049988956 0.015580676 1.97E-09 8.704878605 0.110110561 IVEYSPPS(ph)APR ddPTM_K562_Paclitaxel_30min_R1 1 IVEYSPPSAPR 11 0 O95696;O95696-2 O95696 BRD1 Bromodomain-containing protein 1 1 IVEY(0.001)S(0.406)PPS(0.593)APR 105.1 0.0067452 24243000 1053.7 862.36 1399.2 1379.1 1200.9 1118.3 969.33 1241.2 919.59 1018.4 TRUE FALSE 1068.455051 956.5153811 1045.954655 1290.650699 1364.482911 1316.614803 1153.255307 1135.752313 1007.920728 810.849521 1.317698319 1.179645984 1.289949156 1.591726535 1.682781917 1.623747402 1.422280309 1.400694313 1.243042886 1 9.663290391 -9.017807558 1.822871334 1.001377433 1.448698386 0.463933265 0.148827667 0.39304746 2.971796345 0.167083913 0.047509465 9.60E-10 9.017807558 0.447320953 IVNHWAS(ph)PELR ddPTM_K562_Paclitaxel_30min_R1 2 IVNHWASPELR 11 0 F1T0I1;O15027-2;O15027-4;O15027-3;O15027;O15027-5;A0A3F2YNX0;A0A3F2YNZ0 F1T0I1 SEC16A Protein transport protein Sec16A 1 IVNHWAS(1)PELR;IVNHWAS(1)PELR 123.68 0.0015526 48770000 10135.1 9831 10397 9750.8 8847.1 7978.4 9075.2 11689.5 9822.2 12816.2 TRUE FALSE 10277.02267 10904.38183 7772.148762 9125.427331 10052.2248 9393.257218 10797.17182 10696.40401 10765.6662 10204.25141 1.007131465 1.06861164 0.761657906 0.894277 0.985101641 0.920523892 1.058105234 1.048230153 1.055017734 1 13.31688273 -7.762437093 24.99753138 1.044357475 0.937343576 0.289265525 0.07724688 36.35325231 910777.6043 0.032997938 0.023691881 1.73E-08 7.762437093 -0.107013899 IVRGDQPAASGDS(ph)DDDEPPPLPR ddPTM_K562_Paclitaxel_30min_R1 2 IVRGDQPAASGDSDDDEPPPLPR 23 1 O00264-2;O00264 O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 1 IVRGDQPAASGDS(1)DDDEPPPLPR;IVRGDQPAASGDS(1)DDDEPPPLPR 188.86 3.18E-24 64974000 1301.82 1134.48 1521.18 1039.73 532.06 922.36 1042.38 1168.35 1424.78 1578.82 TRUE FALSE 1320.049496 1258.346363 1137.139295 973.0463715 604.5355799 1085.927595 1240.166163 1069.091375 1561.636485 1257.055617 1.050112245 1.001026801 0.904605397 0.774067876 0.480913948 0.86386599 0.986564275 0.850472612 1.24229705 1 10.29583277 -8.745352551 24.92104791 1.121148488 0.858197676 0.293013274 0.159602516 267.7701726 414822.5674 0.118489191 0.04446887 1.80E-09 8.745352551 -0.262950812 IVS(ph)AQSLAEDDVE ddPTM_K562_Paclitaxel_30min_R1 2 IVSAQSLAEDDVE 13 0 Q15388 Q15388 TOMM20 Mitochondrial import receptor subunit TOM20 homolog 1 IVS(0.561)AQS(0.439)LAEDDVE;IVS(0.975)AQS(0.025)LAEDDVE 216.15 5.76E-16 21603000 5536.7 5032 5829.9 4984.6 4157.7 5041.1 4740.7 6111.7 4932.9 6414.5 TRUE FALSE 5614.230882 5581.410777 4358.069642 4664.910066 4724.04913 5935.068304 5640.223077 5592.472937 5406.727086 5107.221379 1.099273062 1.092846846 0.853315202 0.913394921 0.92497442 1.162093409 1.104362364 1.09501283 1.058643572 1 12.31832288 -7.254594762 24.97297274 1.091231983 0.972831684 0.303960421 0.080679383 694.0307467 2532211.259 0.029183321 0.028583476 5.56E-08 7.254594762 -0.118400299 IVY(ph)MHMERDS(ph)YPR ddPTM_K562_Paclitaxel_30min_R1 1 IVYMHMERDSYPR 13 1 O14921 O14921 RGS13 Regulator of G-protein signaling 13 2 IVY(0.999)MHMERDS(0.988)Y(0.013)PR 44.616 0.031176 0 225.21 98.614 182.03 0 0 87.685 0 0 137.07 173.45 TRUE FALSE 228.3636348 109.38101 136.0742752 0 0 103.2347036 0 0 150.2361859 138.1007948 1.653601163 0.792037513 0.985325793 0 0 0.747531567 0 0 1.087873435 1 7.109577812 -8.804500084 24.99775086 1.04393963 0.502012346 0.137240763 0.521159294 333.9533859 193859.6365 0.529283729 0.136664133 1.57E-09 8.804500084 -0.541927284 IWDPTPSHT(ph)PAGAAT(ph)PGRGDTPGHATPGHGGATSSAR ddPTM_K562_Paclitaxel_30min_R1 2 IWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSAR 37 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 IWDPT(0.069)PS(0.142)HT(0.663)PAGAAT(0.545)PGRGDT(0.541)PGHAT(0.027)PGHGGAT(0.004)S(0.004)S(0.004)AR;IWDPT(0.123)PS(0.133)HT(0.656)PAGAAT(0.715)PGRGDT(0.366)PGHAT(0.007)PGHGGATSSAR 45.671 0.003399 141907000 1963.69 2165.38 2837.55 2883.49 2036.46 2032.93 2112.6 2582.1 1545.5 2296.48 TRUE FALSE 1991.187719 2401.803511 2121.175408 2698.555857 2313.86033 2393.441592 2513.454821 2362.734488 1693.95218 1828.456115 1.088999458 1.313569131 1.160090959 1.475865805 1.265472171 1.308995918 1.374632292 1.292201912 0.926438522 1 10.83641029 -8.757625675 24.98878823 0.963219169 1.291270339 0.615387531 0.101651244 55.1704141 361516.066 0.072861465 0.025175889 1.75E-09 8.757625675 0.32805117 IWDPTPSHT(ph)PAGAATPGRGDT(ph)PGHATPGHGGATSSAR ddPTM_K562_Paclitaxel_30min_R1 1 IWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSAR 37 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 IWDPT(0.013)PS(0.092)HT(0.698)PAGAAT(0.274)PGRGDT(0.918)PGHAT(0.004)PGHGGATSSAR 58.919 0.00019264 80003000 1303.2 1292.8 1965.7 1309.8 1254.1 1277.1 1181.6 1429.1 1259.8 1554 TRUE FALSE 1321.448821 1433.952276 1469.434724 1225.79529 1424.929652 1503.575754 1405.802432 1307.689035 1380.809419 1237.293947 1.068015263 1.158942286 1.187619746 0.990706609 1.151650063 1.215213052 1.136191149 1.056894393 1.115991412 1 10.27297257 -9.302686587 0.983858788 1.001243745 1.128539161 0.253995389 0.062775632 1.506922015 2.700333786 0.062216376 0.020331875 4.98E-10 9.302686587 0.127295415 IWDPTPSHT(ph)PAGAATPGRGDTPGHATPGHGGATSSAR ddPTM_K562_Paclitaxel_30min_R1 2 IWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSAR 37 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 IWDPT(0.101)PS(0.101)HT(0.767)PAGAAT(0.021)PGRGDT(0.009)PGHAT(0.001)PGHGGATSSAR;IWDPT(0.023)PS(0.061)HT(0.474)PAGAAT(0.429)PGRGDT(0.012)PGHAT(0.001)PGHGGATSSAR 46.943 0.002645 536090000 3420.8 3422.7 5231.5 3793.3 3467.5 3287.2 3250.8 4166.2 3253 4310.4 TRUE FALSE 3468.701754 3796.401961 3910.743123 3550.014716 3939.832205 3870.138765 3867.62233 3812.255305 3565.465185 3431.938114 1.01071221 1.106197675 1.139514465 1.034405225 1.147990457 1.127683145 1.126949904 1.110817031 1.038907191 1 11.74480782 -8.921909024 3.552138847 1.000871815 1.1031525 0.383262193 0.042335242 0.208799288 5.123057526 0.040320128 0.010712771 1.20E-09 8.921909024 0.102280685 IWDPTPSHTPAGAAT(ph)PGRGDT(ph)PGHATPGHGGATSSAR ddPTM_K562_Paclitaxel_30min_R1 3 IWDPTPSHTPAGAATPGRGDTPGHATPGHGGATSSAR 37 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 IWDPT(0.029)PS(0.074)HT(0.579)PAGAAT(0.688)PGRGDT(0.622)PGHAT(0.007)PGHGGATSSAR;IWDPT(0.006)PS(0.02)HT(0.203)PAGAAT(0.877)PGRGDT(0.841)PGHAT(0.047)PGHGGAT(0.001)S(0.002)S(0.002)AR;IWDPT(0.088)PS(0.308)HT(0.294)PAGAAT(0.685)PGRGDT(0.543)PGHAT(0.081)PGHGGATSSAR 60.361 0.00014873 137870000 5759 5990.5 7203.3 6752.7 5953.4 5886.6 5395 7176.2 5686.8 7858 TRUE FALSE 5839.643768 6644.563049 5384.737826 6319.612046 6764.353872 6930.505858 6418.673086 6566.537018 6233.042549 6256.535287 0.933367032 1.062019591 0.860658109 1.01008174 1.081166103 1.107722652 1.02591495 1.049548467 0.996245088 1 12.61114823 -6.517475421 24.85584899 1.048010267 0.958407801 0.346585946 0.055729267 243.6001292 1120587.932 0.015962315 0.021263032 3.04E-07 6.517475421 -0.089602466 IWGEDLR ddPTM_K562_Paclitaxel_30min_R1 1 IWGEDLR 7 0 A0A0C4DFS8;P43490 A0A0C4DFS8 NAMPT Nicotinamide phosphoribosyltransferase 0 132.96 0.00047518 13571000 4221 4447.1 6243.6 5691.4 4261.1 4205.6 4458.7 5113.5 4392.6 5168.4 FALSE TRUE 4280.107023 4932.649417 4667.32596 5326.379078 4841.533961 4951.40411 5304.715049 4679.076258 4814.528857 4115.077243 1.040103689 1.198677236 1.1342013 1.29435701 1.176535378 1.203234792 1.289092461 1.137056726 1.1699729 1 12.0067038 -9.426922861 1.501669857 1.000238191 1.191046371 0.379171958 0.070224942 2.034228125 5.960643839 0.066439395 0.019244823 3.74E-10 9.426922861 0.19080818 IWLS(ph)TETLANED ddPTM_K562_Paclitaxel_30min_R1 1 IWLSTETLANED 12 0 Q9NXD2 Q9NXD2 MTMR10 Myotubularin-related protein 10 1 IWLS(0.87)T(0.127)ET(0.003)LANED 98.156 0.010648 1474000 548.07 542.57 728.45 521.12 467.35 393.07 449.5 356.02 541.97 492.63 TRUE FALSE 555.7446709 601.8096275 544.5437881 487.6976956 531.0109823 462.7754455 534.7902785 325.7738788 594.0286401 392.2317356 1.416878392 1.534321608 1.388321593 1.243391728 1.353819526 1.179852122 1.363454891 0.830564815 1.514483878 1 8.615562459 -2 0.125836618 0.938713056 2.800108974 0.320088042 0.175740182 93.73837307 0.805232054 0.974776969 30.7974099 0.01 2 1.861395917 IWSTVPT(ph)DEEDEMEESTNRPR ddPTM_K562_Paclitaxel_30min_R1 2 IWSTVPTDEEDEMEESTNRPR 21 1 Q9GZL7 Q9GZL7 WDR12 Ribosome biogenesis protein WDR12 1 IWSTVPT(1)DEEDEMEESTNRPR;IWS(0.001)T(0.006)VPT(0.992)DEEDEMEESTNRPR 145.04 4.35E-16 84391000 2479.2 2577.5 2963.7 2747.7 2071.91 2361.4 2161.33 2373.3 2277.28 3003.7 TRUE FALSE 2513.916449 2858.920167 2215.47728 2571.47482 2354.13922 2780.161134 2571.431085 2171.673351 2496.022919 2391.544291 1.051168677 1.195428484 0.926379364 1.075236127 0.984359449 1.162496193 1.075217839 0.908063196 1.043686679 1 11.22372679 -8.225492228 24.80369454 0.981906169 1.067490706 0.189547711 0.078867262 832.7334166 574590.8818 0.036336964 0.020978293 5.95E-09 8.225492228 0.085584537 IWYEHR ddPTM_K562_Paclitaxel_30min_R1 1 IWYEHR 6 0 H0YL11;P48735-2;O75874;P48735 H0YL11 IDH2;IDH1 "Isocitrate dehydrogenase [NADP], mitochondrial;Isocitrate dehydrogenase [NADP] cytoplasmic" 0 138.53 1.94E-08 8538300 1057.7 1100.4 1723.6 1443.2 1194.3 1439 1223.2 1379.1 935.2 1553.3 FALSE TRUE 1072.511063 1220.545393 1288.455863 1350.639612 1356.98388 1694.186445 1455.295814 1261.936847 1025.030139 1236.736607 0.867210574 0.986908114 1.041819135 1.092099646 1.097229492 1.36988461 1.176722518 1.0203764 0.828818467 1 10.27232256 -5.45254574 1.361711763 1.100273228 0.819524162 0.201680973 0.130127492 1.494095096 3.237762893 0.042141421 0.526719501 3.53E-06 5.45254574 -0.280749066 IY(ph)HVT(ph)VMPCY(ph)DKK ddPTM_K562_Paclitaxel_30min_R1 1 IYHVTVMPCYDKK 13 1 H3BSH2;Q9H6Q4-3;Q9H6Q4 H3BSH2 NARFL Cytosolic Fe-S cluster assembly factor NARFL 3 IY(1)HVT(1)VMPCY(1)DKK 42.976 0.029153 49444000 1352.4 1679.2 1487.7 1421 1109.4 1458.9 1721.3 1827.3 1797.9 1822 TRUE FALSE 1371.337773 1862.540735 1112.111735 1329.86342 1260.519062 1717.615431 2047.907689 1672.059459 1970.596328 1450.6754 0.945309869 1.283912814 0.766616526 0.916720184 0.868918755 1.184010862 1.411692574 1.152607578 1.358399218 1 10.50250903 -7.396632087 5.294862065 1.250054891 0.962959771 0.399001462 0.16231723 0.230344726 8.984032576 0.05774904 0.050510354 4.01E-08 7.396632087 -0.28709512 IY(ph)T(ph)ENMK ddPTM_K562_Paclitaxel_30min_R1 1 IYTENMK 7 0 Q6ZP01 Q6ZP01 RBM44 RNA-binding protein 44 2 IY(1)T(1)ENMK 89.55 0.016848 0 170.51 168.68 208.54 111.06 204.32 131.73 123.43 258.63 123.11 137.22 TRUE FALSE 172.8976661 187.0970528 155.8914978 103.9371087 232.1518432 155.0904659 146.8501982 236.6577672 134.9352656 109.2544887 1.582522312 1.712488476 1.42686584 0.951330329 2.12487236 1.419534042 1.344111349 2.166114821 1.235054662 1 6.771548743 -8.993330125 24.99765882 0.999999714 1.580121602 0.249672558 0.340297398 173.5573706 650462.7015 0.320567505 0.082770174 1.02E-09 8.993330125 0.580121888 IYHLPDAES(ph)DEDEDFKEQTR ddPTM_K562_Paclitaxel_30min_R1 4 IYHLPDAESDEDEDFKEQTR 20 1 B5MCX3;Q15019;Q15019-3;Q15019-2;H7C2Y0 B5MCX3 2-Sep Septin-2 1 IY(0.001)HLPDAES(0.999)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR;IYHLPDAES(1)DEDEDFKEQTR 121 1.11E-05 1066590000 11168.27 9502.22 19755.4 12487.6 9881.16 8696.54 7750.42 11942.01 10935.61 15003.7 TRUE FALSE 11324.66024 10539.70451 14767.90494 11686.70123 11227.14128 10238.74926 9221.021735 10927.46171 11986.0242 11945.9377 0.947992574 0.882283566 1.236228189 0.978299194 0.939829217 0.857090462 0.771896017 0.914742901 1.003355659 1 13.54423248 -6.799100426 3.264886277 0.896748752 1.02036853 0.167180004 0.10574348 0.398743621 8.742319624 0.035294184 0.042792131 1.59E-07 6.799100426 0.123619778 IYLEENPEKSETIQDTDTQSLVGS(ph)PSTR ddPTM_K562_Paclitaxel_30min_R1 1 IYLEENPEKSETIQDTDTQSLVGSPSTR 28 1 E9PMR6;Q9NZN5-2;Q9NZN5 E9PMR6 ARHGEF12 Rho guanine nucleotide exchange factor 12 1 IYLEENPEKSETIQDTDT(0.001)QS(0.007)LVGS(0.684)PS(0.17)T(0.137)R 78.415 8.78E-06 0 278.57 333.22 651.97 364.61 254.85 223.18 239.68 197.76 192.52 373.36 TRUE FALSE 282.4708395 369.6020865 487.37211 341.2255465 289.5648846 262.7578394 285.1580288 180.9590536 211.0124062 297.2690271 0.950219544 1.243325247 1.639498453 1.147867808 0.974083602 0.883905875 0.959259132 0.608738339 0.709836502 1 8.215625344 -6.882926051 2.023400428 0.813090397 1.28466364 0.517311883 0.18953461 0.261412615 2.190049164 0.070755127 0.084186044 1.31E-07 6.882926051 0.471573243 IYNISGNGS(ph)PLADSK ddPTM_K562_Paclitaxel_30min_R1 1 IYNISGNGSPLADSK 15 0 Q53HL2 Q53HL2 CDCA8 Borealin 1 IYNIS(0.112)GNGS(0.875)PLADS(0.012)K 101.04 0.0048284 10094000 1454.5 1701.9 2800.5 1895.6 1509.5 1111.2 1677.6 2242.9 1538 3104.6 TRUE FALSE 1474.867488 1887.719197 2093.479139 1774.0247 1715.119456 1308.255718 1995.915842 2052.351645 1685.731772 2471.880816 0.59665801 0.763677272 0.846917507 0.717682135 0.693852003 0.529255177 0.807448251 0.830279369 0.681963208 1 11.27139347 -10.72026043 0.514374591 1.062474805 0.713558177 0.439047678 0.095559896 13.55783311 2.663436938 1.512465677 0.047803863 1.90E-11 10.72026043 -0.348916627 IYNISGNGSPLADS(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 IYNISGNGSPLADSK 15 0 Q53HL2 Q53HL2 CDCA8 Borealin 1 IYNIS(0.027)GNGS(0.142)PLADS(0.832)K 79.471 0.028522 19909000 1433.6 1597.2 2406.6 1767.5 1260.1 898.88 1153 2077.3 1894.4 2091.3 TRUE FALSE 1453.674823 1771.587697 1799.024066 1654.140461 1431.746954 1058.283747 1371.775731 1900.820399 2076.365584 1665.091912 0.873029778 1.063957902 1.080435292 0.993422915 0.859860614 0.635570769 0.82384385 1.141570856 1.24699758 1 10.7013861 -8.276175111 23.23073566 1.145713282 0.908600424 0.372712919 0.133317581 384.2600762 605775.0246 0.081874597 0.039663427 5.29E-09 8.276175111 -0.237112858 IYQY(ph)IQSR ddPTM_K562_Paclitaxel_30min_R1 5 IYQYIQSR 8 0 A0A2R8Y6I6;Q13627-2;Q13627;A0A2R8Y443;A0A2R8YDF3;A0A2R8Y6L5;Q13627-4;Q13627-3;Q13627-5;Q9Y463-2;Q9Y463-3;Q9Y463 A0A2R8Y6I6 DYRK1A;DYRK1B Dual specificity tyrosine-phosphorylation-regulated kinase 1A;Dual specificity tyrosine-phosphorylation-regulated kinase 1B 1 IYQY(1)IQSR;IYQY(1)IQSR;IYQY(0.999)IQS(0.001)R;IYQY(1)IQSR;IYQY(1)IQSR 200.16 2.42E-08 2756325000 8037.9 8384.06 9630.1 8904.6 7792.4 7076.49 7163.95 8520.8 7474.91 8909.5 TRUE FALSE 8150.455399 9299.460024 7198.862151 8333.498812 8853.856806 8331.406143 8523.272114 7796.904855 8192.908504 7093.739009 1.148964656 1.310939127 1.014819144 1.174768172 1.248122717 1.17447317 1.201520397 1.099124854 1.154949244 1 12.79233054 -9.43339103 0.780340925 0.999272133 1.181668325 0.333869553 0.074225234 1.68566613 1.787994633 0.076061467 0.025802399 3.69E-10 9.43339103 0.182396192 IYSPDHSSNNFSSSPST(ph)PVGS(ph)PQGLAGTSQWPR ddPTM_K562_Paclitaxel_30min_R1 1 IYSPDHSSNNFSSSPSTPVGSPQGLAGTSQWPR 33 0 K7EPH6 K7EPH6 TCF3 2 IYSPDHS(0.001)S(0.001)NNFS(0.143)S(0.143)S(0.143)PS(0.143)T(0.43)PVGS(0.995)PQGLAGT(0.002)SQWPR 98.189 1.08E-11 9997900 496.14 595.67 877.04 677.53 751.75 852.4 345.7 708.19 488.65 540.31 TRUE FALSE 503.0874907 660.707265 655.6204049 634.0762583 854.1510772 1003.561172 411.2947703 648.0248391 535.5870158 430.1945254 1.169441871 1.535833736 1.524009178 1.473929167 1.985499644 2.332807863 0.956066956 1.506353059 1.244987986 1 8.748845355 -8.587816888 1.197738186 1.061900263 1.622171822 0.22121867 0.357888493 0.745035672 1.985433642 0.348380355 0.117826515 2.58E-09 8.587816888 0.560271559 KAAS(ph)PSPQSVR ddPTM_K562_Paclitaxel_30min_R1 1 KAASPSPQSVR 11 1 A9Z1X7;Q8IYB3-2;Q8IYB3;E9PCT1 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 KAAS(0.93)PS(0.069)PQS(0.001)VR 115.24 0.0083821 7393900 631.35 657.19 1186.9 828.16 718.96 560.09 449.03 650.08 745.61 983.97 TRUE FALSE 640.1908479 728.9442267 887.2524156 775.0455243 816.8945241 659.4140974 534.2310984 594.8516463 817.229172 783.4363739 0.817157422 0.930444706 1.132513686 0.989289686 1.042706914 0.841694513 0.681907448 0.759285203 1.043134068 1 9.613672302 -7.276804703 22.88505393 0.838703475 0.988254732 0.165088624 0.12454023 399.8608768 595547.8138 0.045053597 0.039925894 5.29E-08 7.276804703 0.149551258 KAEAGAGS(ph)ATEFQFR ddPTM_K562_Paclitaxel_30min_R1 2 KAEAGAGSATEFQFR 15 1 P46783;Q9NQ39 P46783 RPS10;RPS10P5 40S ribosomal protein S10;Putative 40S ribosomal protein S10-like 1 KAEAGAGS(0.979)AT(0.021)EFQFR;KAEAGAGS(0.828)AT(0.172)EFQFR 85.054 0.011788 76049000 7454.2 6691.3 11458.5 8184.8 6063.7 5838.9 5871.3 8143.8 6742.5 9292.9 TRUE FALSE 7558.581798 7421.878763 8565.659958 7659.863562 6889.678599 6874.346933 6985.348525 7451.933358 7390.147251 7399.001879 1.021567763 1.003091888 1.157677765 1.035256334 0.931163245 0.929091119 0.944093357 1.007153867 0.998803267 1 12.85311495 -6.610254408 6.060786463 0.966070696 1.061514651 0.460321553 0.046139623 0.190319692 10.57703708 0.014509202 0.018819073 2.45E-07 6.610254408 0.095443955 KAEDS(ph)DS(ph)EPEPEDNVR ddPTM_K562_Paclitaxel_30min_R1 2 KAEDSDSEPEPEDNVR 16 1 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 2 KAEDS(1)DS(1)EPEPEDNVR;KAEDS(1)DS(1)EPEPEDNVR 143.83 3.32E-08 43900000 4881.3 3983.2 8513.9 5739 4091.6 4123.1 3177 5416.2 4735.4 7055.9 TRUE FALSE 4949.65326 4418.099246 6364.460646 5370.926227 4648.945191 4854.273894 3779.819165 4956.060003 5190.256328 5617.903707 0.881049857 0.786432 1.132888881 0.956037431 0.827523118 0.864072107 0.672816652 0.882190273 0.923877766 1 12.45581618 -6.759615274 24.97006342 0.846525934 0.942038968 0.092974305 0.11234157 101.7541503 1392887.878 0.034863814 0.042720766 1.74E-07 6.759615274 0.095513034 KAEGEPQEES(ph)PLK ddPTM_K562_Paclitaxel_30min_R1 4 KAEGEPQEESPLK 13 1 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK;KAEGEPQEES(1)PLK 157.91 0.0013923 83168500 10316.5 7514.02 24212.6 13047.1 8968.18 7339.97 6324.25 11327.3 7288.13 17354.4 TRUE FALSE 10460.96283 8334.426114 18099.82967 12210.3174 10189.79795 8641.610621 7524.243423 10364.97516 7988.187451 13817.56375 0.757077225 0.603176237 1.309914685 0.883680917 0.737452573 0.625407689 0.544541973 0.750130439 0.578118371 1 13.75421565 -6.84505956 3.957665461 0.675648109 0.898650476 0.156919984 0.204189952 0.377054753 11.28886629 0.065853424 0.076920061 1.43E-07 6.84505956 0.223002367 KAENQNESS(ph)QGK ddPTM_K562_Paclitaxel_30min_R1 2 KAENQNESSQGK 12 1 Q9UKI8;B3KRP1;Q9UKI8-5;Q9UKI8-4 Q9UKI8 TLK1 Serine/threonine-protein kinase tousled-like 1 1 KAENQNES(0.106)S(0.894)QGK;KAENQNES(0.215)S(0.785)QGK 87.138 0.013253 3404700 1948.95 1283.67 3733 1704.24 1225.74 1172.5 1084.66 1961.88 1592.94 2727.6 TRUE FALSE 1976.241313 1423.825432 2790.557981 1594.937674 1392.70654 1380.426412 1290.468573 1795.206048 1745.949004 2171.713623 0.909991673 0.655623014 1.284956705 0.734414362 0.641293827 0.635639247 0.594216732 0.826631113 0.803949925 1 11.08461816 -6.470735771 24.99998885 0.724425927 0.935559079 0.200007783 0.180431728 508.9519527 244016.9028 0.049984563 0.07413828 3.38E-07 6.470735771 0.211133152 KAEQGS(ph)EEEGEGEEEEEEGGESK ddPTM_K562_Paclitaxel_30min_R1 1 KAEQGSEEEGEGEEEEEEGGESK 23 1 Q5STZ8;Q8NE71 Q5STZ8 ABCF1 ATP-binding cassette sub-family F member 1 1 KAEQGS(1)EEEGEGEEEEEEGGESK 62.519 0.006448 21168000 2398 1918.6 6653.3 3200.5 2534.3 1806.1 1574.7 2913.5 1682.7 4727.9 TRUE FALSE 2431.579398 2128.079236 4973.592128 2995.234255 2879.514566 2126.386476 1873.491105 2665.97999 1844.330854 3764.351385 0.645949102 0.56532428 1.321234821 0.795684023 0.764943086 0.564874598 0.497692939 0.708217623 0.489946518 1 11.87818559 -7.023826228 3.323703768 0.625261703 0.845279913 0.11297899 0.230931686 0.478988428 10.93588126 0.0791361 0.084389295 9.47E-08 7.023826228 0.220018209 KALVVPEPEPDS(ph)DSNQER ddPTM_K562_Paclitaxel_30min_R1 2 KALVVPEPEPDSDSNQER 18 1 C9J0A5;C9JXC9;Q5VTR2 C9J0A5 RNF20 E3 ubiquitin-protein ligase BRE1A 1 KALVVPEPEPDS(0.836)DS(0.164)NQER;KALVVPEPEPDS(0.5)DS(0.5)NQER 159.14 5.58E-11 17437800 4050.4 3856.6 6395.2 4646.9 4020.1 3650.9 3084.07 4932.9 4700.7 5542.5 TRUE FALSE 4107.118097 4277.67663 4780.652665 4348.868633 4567.705681 4298.335854 3669.256183 4513.819355 5152.223238 4412.935458 0.930699788 0.969349466 1.083327121 0.985482039 1.035071944 0.974030981 0.831477419 1.02286095 1.16752744 1 12.10752293 -8.528529809 24.91680357 1.087573927 0.976068435 0.273555269 0.072215223 198.8198847 876608.5222 0.049216141 0.018726795 2.96E-09 8.528529809 -0.111505492 KALVVPEPEPDSDS(ph)NQER ddPTM_K562_Paclitaxel_30min_R1 2 KALVVPEPEPDSDSNQER 18 1 C9J0A5;C9JXC9;Q5VTR2 C9J0A5 RNF20 E3 ubiquitin-protein ligase BRE1A 1 KALVVPEPEPDS(0.031)DS(0.969)NQER;KALVVPEPEPDS(0.082)DS(0.918)NQER 195.15 4.42E-14 82418000 7697.6 5933.2 11945.7 8426.5 6563.1 6210.7 6269.5 8893.4 7290.2 10000.3 TRUE FALSE 7805.390149 6581.006841 8929.860292 7886.062006 7457.105334 7312.080442 7459.104896 8137.850159 7990.456283 7962.233371 0.980301605 0.826527751 1.121527074 0.990433417 0.936559504 0.918345407 0.936810634 1.022056222 1.003544598 1 12.95895744 -8.268096404 24.29790388 1.009600309 0.958650359 0.097524223 0.06952525 939.5126813 3429153.737 0.037736032 0.018775441 5.39E-09 8.268096404 -0.050949951 KANNSQEPS(ph)PQLASSVASTR ddPTM_K562_Paclitaxel_30min_R1 2 KANNSQEPSPQLASSVASTR 20 1 Q96HC4;H0Y8Y3;Q96HC4-7;Q96HC4-4 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 1 KANNS(0.001)QEPS(0.998)PQLASSVASTR;KANNSQEPS(1)PQLASSVASTR 118.54 2.78E-05 37584000 4305.2 3489.5 7034.8 4448.7 3876.3 3420.4 2719.9 4403 3842.6 5374 TRUE FALSE 4365.486083 3870.495411 5258.777735 4163.380294 4404.317686 4026.959915 3235.986826 4028.937667 4211.698899 4278.77585 1.020265196 0.904580082 1.229037912 0.973030708 1.029340597 0.941147668 0.756287999 0.941609892 0.984323331 1 12.06298239 -7.324547261 4.265743761 0.908012059 1.032447633 0.221623186 0.09872603 0.324259136 11.91259187 0.03593286 0.031924626 4.74E-08 7.324547261 0.124435574 KAPSTSHSGFPPVANGPRS(ph)PPSLR ddPTM_K562_Paclitaxel_30min_R1 1 KAPSTSHSGFPPVANGPRSPPSLR 24 2 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 KAPSTSHS(0.004)GFPPVANGPRS(0.854)PPS(0.142)LR 55.621 0.0090075 50622000 2041.2 1673.9 2914.7 2354.1 1497.3 1970.6 1264 2036.4 1890.8 2440.3 TRUE FALSE 2069.783098 1856.662063 2178.847936 2203.118563 1701.257609 2320.058241 1503.837401 1863.395109 2072.419788 1942.96552 1.065270112 0.95558158 1.121403295 1.133894832 0.875598456 1.194081015 0.773990781 0.959046926 1.066627157 1 10.92404458 -7.751359242 24.99967095 0.946503432 1.051089324 0.187229385 0.109351235 364.20408 903261.3911 0.041227662 0.03155573 1.77E-08 7.751359242 0.104585891 KAS(ph)GPPVSELITK ddPTM_K562_Paclitaxel_30min_R1 3 KASGPPVSELITK 13 1 P10412;P16403;P16402 P10412;P16403;P16402 HIST1H1E;HIST1H1C;HIST1H1D Histone H1.4;Histone H1.2;Histone H1.3 1 KAS(1)GPPVSELITK;KAS(0.987)GPPVS(0.013)ELITK;KAS(0.995)GPPVS(0.005)ELITK 135.55 0.00032315 165665000 11511.3 8365.18 22799.7 11595 7874.21 7291.85 6608.57 10494.8 9943.9 14527.8 TRUE FALSE 11672.49372 9278.518642 17043.63375 10851.3486 8946.810713 8584.957215 7862.511658 9603.201234 10899.05603 11567.02639 1.009117929 0.802152458 1.47346718 0.938127764 0.773475431 0.742192239 0.679734912 0.830222126 0.942252197 1 13.49773041 -6.519633878 24.12637599 0.812153712 1.088996647 0.311071295 0.176901514 96.83168949 719972.4606 0.052176925 0.0688426 3.02E-07 6.519633878 0.276842935 KAS(ph)GS(ph)ENEGDYNPGR ddPTM_K562_Paclitaxel_30min_R1 1 KASGSENEGDYNPGR 15 1 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 2 KAS(0.993)GS(0.997)ENEGDY(0.01)NPGR 105.63 0.0030528 7599400 2134.3 2077.6 3849.2 2731.6 2005.1 1911.5 1698.3 2645.6 2033.7 3775.9 TRUE FALSE 2164.186785 2304.439394 2877.421854 2556.407402 2278.228567 2250.477686 2020.543559 2420.839767 2229.045972 3006.369507 0.719867195 0.766519015 0.957108515 0.850330405 0.757800583 0.748569888 0.672087564 0.805236935 0.741441119 1 11.55380662 -3.538595694 17.0947486 0.794848238 0.407741403 0 0.099731268 0 0 0.02280461 0 0.000289337 3.538595694 -0.387106835 KAS(ph)GSENEGDYNPGR ddPTM_K562_Paclitaxel_30min_R1 3 KASGSENEGDYNPGR 15 1 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 1 KAS(0.995)GS(0.005)ENEGDYNPGR;KAS(0.637)GS(0.363)ENEGDYNPGR;KAS(0.83)GS(0.17)ENEGDYNPGR 159.14 2.25E-14 13410000 1635.6 1641.42 3382.7 2346.7 1600.85 1478.08 1013.76 1940.34 1715.74 2298.72 TRUE FALSE 1658.503446 1820.635787 2528.695548 2196.193165 1818.912873 1740.196735 1206.115668 1775.496006 1880.544493 1830.239602 0.906167392 0.9947527 1.38161995 1.199948445 0.993811341 0.950802689 0.658993318 0.970089383 1.027485413 1 10.83781681 -7.003667454 3.41373549 0.905755194 1.129238297 0.272811571 0.151141859 0.320585687 7.893850198 0.054598344 0.059005565 9.92E-08 7.003667454 0.223483103 KAS(ph)PEAASTPRDPIDVDLPEEAER ddPTM_K562_Paclitaxel_30min_R1 2 KASPEAASTPRDPIDVDLPEEAER 24 2 P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;H3BVD2;H3BT29;P29590-4 P29590-2;P29590-4 PML Protein PML 1 KAS(0.966)PEAAS(0.026)T(0.008)PRDPIDVDLPEEAER;KAS(0.893)PEAAS(0.046)T(0.061)PRDPIDVDLPEEAER 72.864 0.0034649 58148000 2683.6 2348.4 4977.4 2832 2393.8 1677.13 2243.53 2965.4 2455.58 3149.3 TRUE FALSE 2721.17868 2604.806254 3720.79381 2650.368196 2719.876087 1974.545457 2669.228105 2713.470761 2691.449431 2507.470931 1.085228405 1.038818126 1.483883129 1.056988603 1.084708921 0.787464944 1.064510089 1.082154424 1.073372137 1 11.29201726 -6.500759636 24.58488244 1.016020794 1.200289906 0.27386448 0.13673476 854.9449792 950251.5643 0.039568314 0.058108239 3.16E-07 6.500759636 0.184269112 KAS(ph)PEPEGEAAGK ddPTM_K562_Paclitaxel_30min_R1 3 KASPEPEGEAAGK 13 1 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK;KAS(1)PEPEGEAAGK 100.58 0.0049562 80390000 8646.4 6814.7 19016.2 9804.9 6569.9 5160.1 5099.7 9686.6 7983.2 11953.3 TRUE FALSE 8767.476276 7558.751992 14215.32512 9176.057599 7464.831609 6075.171284 6067.341453 8863.662868 8750.02203 9517.210899 0.921223284 0.794219238 1.493644017 0.964154067 0.784350761 0.638335259 0.637512557 0.931329878 0.919389317 1 13.21632313 -6.617925679 4.982963547 0.798701029 1.069694351 0.237210462 0.200983488 0.291522499 12.01635239 0.062641482 0.081682815 2.41E-07 6.617925679 0.270993322 KAS(ph)PPSGLWSPAYASH ddPTM_K562_Paclitaxel_30min_R1 2 KASPPSGLWSPAYASH 16 1 Q8TEM1 Q8TEM1 NUP210 Nuclear pore membrane glycoprotein 210 1 KAS(0.974)PPS(0.025)GLWS(0.001)PAYASH;KAS(0.983)PPS(0.017)GLWSPAYASH 101.54 0.001852 220450000 5499.3 5492.6 9080.7 6484.6 4960.9 4546.9 4232.73 6606.7 5460.5 7767.6 TRUE FALSE 5576.307167 6092.300643 6788.164976 6068.70678 5636.658569 5353.228873 5035.868421 6045.419597 5985.005423 6184.558856 0.901649947 0.985082491 1.097598897 0.981267528 0.911408348 0.865579744 0.814264774 0.977502153 0.967733603 1 12.59445498 -6.702321538 4.930201854 0.913225948 1.00031007 0.188017721 0.067997078 0.301842175 14.74894693 0.021690127 0.027763147 1.98E-07 6.702321538 0.087084123 KAS(ph)SPSPLTIGTPESQR ddPTM_K562_Paclitaxel_30min_R1 1 KASSPSPLTIGTPESQR 17 1 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 KAS(0.985)S(0.015)PSPLTIGTPESQR 86.488 0.0056768 10714000 1653.4 1373.6 2504 1665.6 1464.8 1299.8 894.39 1443.9 1248.2 1849 TRUE FALSE 1676.552701 1523.574293 1871.834231 1558.775871 1664.330559 1530.30128 1064.095833 1321.231682 1368.095187 1472.172785 1.138828756 1.034915404 1.271477268 1.058826713 1.130526645 1.039484832 0.722806347 0.897470525 0.929303409 1 10.52373129 -7.558297939 7.899387114 0.878380272 1.122144836 0.625502967 0.087318668 0.140514735 26.50504477 0.032466423 0.025235029 2.77E-08 7.558297939 0.243764564 KASATCSSATAAASSGLEEWT(ph)SRSPR ddPTM_K562_Paclitaxel_30min_R1 1 KASATCSSATAAASSGLEEWTSRSPR 26 2 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3;Q96G74-4 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 KASATCSSATAAAS(0.002)S(0.008)GLEEWT(0.478)S(0.478)RS(0.034)PR 100.14 7.73E-05 81545000 1959.9 1689.7 2921.6 2124.8 1696.7 1352.3 1387 2306.8 2093 2471.4 TRUE FALSE 1987.344647 1874.18716 2184.005946 1988.524838 1927.819265 1592.111418 1650.176009 2110.822941 2294.042002 1967.727323 1.009969533 0.952462843 1.109912903 1.010569307 0.979718705 0.809111811 0.838620265 1.072721264 1.165833281 1 10.9423146 -8.493432004 23.77142729 1.095036873 0.960864731 0.276730637 0.089185226 478.808522 386529.6274 0.05354782 0.02564036 3.21E-09 8.493432004 -0.134172142 KASGS(ph)ENEGDY(ph)NPGR ddPTM_K562_Paclitaxel_30min_R1 1 KASGSENEGDYNPGR 15 1 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 2 KAS(0.055)GS(0.967)ENEGDY(0.978)NPGR 99.238 0.01122 9816100 2941.6 2450.1 5833 4166.1 2506.4 2320.6 2454.8 3601 3440.2 4563 TRUE FALSE 2982.791476 2717.610204 4360.387008 3898.904993 2847.814114 2732.125827 2920.585485 3295.072573 3770.646581 3633.058095 0.821013977 0.748022777 1.200197435 1.073174414 0.78386143 0.752018205 0.803891765 0.906969414 1.03787126 1 11.82696872 -8.701757541 5.635455633 1.018780995 0.886691632 0.128382581 0.13895064 0.440297545 27.26781932 0.11280094 0.0394699 1.99E-09 8.701757541 -0.132089364 KASGS(ph)ENEGDYNPGR ddPTM_K562_Paclitaxel_30min_R1 1 KASGSENEGDYNPGR 15 1 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 1 KAS(0.324)GS(0.675)ENEGDY(0.001)NPGR 104.9 0.0060168 3141800 559.73 675.14 1170 663.24 633.15 568.29 552.72 812.48 457.93 959.26 TRUE FALSE 567.5679469 748.8540684 874.6190296 620.702755 719.3957493 669.0682523 657.5957346 743.4547527 501.9162226 763.7622855 0.743121201 0.980480553 1.145145612 0.812691025 0.941910543 0.876016354 0.860995295 0.973411187 0.657162879 1 9.576979871 KASTAPGAEAS(ph)PSPCITER ddPTM_K562_Paclitaxel_30min_R1 1 KASTAPGAEASPSPCITER 19 1 Q66PJ3 Q66PJ3 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 1 KASTAPGAEAS(0.423)PS(0.423)PCIT(0.155)ER 103.74 0.00044319 25891000 1846.9 1820 3217.7 2220.3 1819.1 1623 1273.8 2289.9 2337.7 3049.1 TRUE FALSE 1872.762298 2018.713755 2405.351839 2077.899896 2066.892218 1910.816262 1515.4969 2095.358702 2562.24653 2427.691746 0.771416841 0.831536276 0.990797881 0.855915871 0.851381655 0.787091798 0.624254254 0.863107396 1.055424987 1 11.24536953 -8.682505855 5.24601741 1.026732277 0.82016781 0.47763443 0.086866085 0.184765251 8.558872553 0.070028438 0.024410863 2.08E-09 8.682505855 -0.206564467 KASTAPGAEASPS(ph)PCITER ddPTM_K562_Paclitaxel_30min_R1 1 KASTAPGAEASPSPCITER 19 1 Q66PJ3 Q66PJ3 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 1 KASTAPGAEAS(0.057)PS(0.941)PCIT(0.002)ER 134.15 1.52E-09 26178000 1610.6 1428.8 2321.1 1556.6 1379.2 1166.4 809.24 1399.6 1464.4 1923.3 TRUE FALSE 1633.153369 1584.801216 1735.109598 1456.766643 1567.07039 1373.244663 962.7890655 1280.695244 1605.062163 1531.330404 1.066493139 1.03491788 1.133073302 0.951307856 1.023339173 0.896765753 0.628727192 0.83632849 1.048148824 1 10.58056988 -7.282436855 3.755385913 0.852813466 1.043825589 0.323570686 0.113177413 0.256057392 8.016361493 0.042012101 0.038516974 5.22E-08 7.282436855 0.191012123 KASVVDPSTESSPAPQEGSEQPAS(ph)PASPLSSR ddPTM_K562_Paclitaxel_30min_R1 1 KASVVDPSTESSPAPQEGSEQPASPASPLSSR 32 1 Q66K14-2;Q66K14 Q66K14-2 TBC1D9B TBC1 domain family member 9B 1 KASVVDPSTESSPAPQEGS(0.001)EQPAS(0.838)PAS(0.087)PLS(0.014)S(0.06)R 148.03 3.56E-38 28071000 1260.4 1030.8 2101.8 1380.3 903.64 924.51 812.01 1350.5 1246.9 1527.1 TRUE FALSE 1278.049489 1143.34623 1571.174595 1291.773736 1026.731067 1088.458868 966.0846585 1235.766595 1366.670316 1215.876182 1.051134571 0.940347584 1.29221595 1.062422108 0.84443719 0.895205354 0.794558421 1.016358914 1.124020963 1 10.2477806 -6.605993058 7.691335126 0.937091305 1.09515116 0.25385607 0.118580613 0.331388838 26.39302617 0.036908889 0.047710853 2.48E-07 6.605993058 0.158059855 KAVPMAPAPAS(ph)PGSSNDSSAR ddPTM_K562_Paclitaxel_30min_R1 4 KAVPMAPAPASPGSSNDSSAR 21 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 KAVPMAPAPAS(0.545)PGS(0.088)S(0.122)NDS(0.122)S(0.122)AR;KAVPMAPAPAS(0.345)PGS(0.062)S(0.062)NDS(0.266)S(0.266)AR;KAVPMAPAPAS(0.732)PGS(0.054)S(0.016)NDS(0.099)S(0.099)AR;KAVPMAPAPAS(0.539)PGS(0.088)S(0.028)NDS(0.173)S(0.173)AR 190.99 9.23E-24 144964400 9940.7 8386.15 14476.2 11083.6 8828.5 8440.5 7326.28 10834.7 10467.2 12742.4 TRUE FALSE 10079.90047 9301.778217 10821.50427 10372.7475 10031.09117 9937.304165 8716.403384 9914.224607 11472.62133 10145.49189 0.99353492 0.916838565 1.0666318 1.022399665 0.988723985 0.97947978 0.859140541 0.977204922 1.130809768 1 13.30855119 -8.68792663 11.687454 1.065290549 0.974763232 0.261270593 0.060467086 0.701539751 108.1693135 0.042091206 0.015879873 2.05E-09 8.68792663 -0.090527316 KAVS(ph)CTPLY(ph)VEIR ddPTM_K562_Paclitaxel_30min_R1 1 KAVSCTPLYVEIR 13 1 G3V4G8;Q4W4Y0 G3V4G8 C14orf28 Uncharacterized protein C14orf28 2 KAVS(0.636)CT(0.491)PLY(0.873)VEIR 46.89 0.03011 7841900 412.03 562.07 490.37 548.27 405.36 547.45 430.86 572.43 602.62 712.41 TRUE FALSE 417.7996912 623.4387034 366.5700287 513.1064162 460.5768948 644.5325709 512.6134358 523.7984985 660.5043436 567.2204509 0.736573744 1.099111822 0.646256721 0.904597878 0.811989226 1.136299952 0.903728762 0.923447837 1.164457915 1 9.147765739 -7.240902619 24.972409 1.013186258 0.846975246 0.323051455 0.133731663 1077.320583 1310007.552 0.042358167 0.042308097 5.74E-08 7.240902619 -0.166211012 KAYS(ph)FCGTVEYMAPEVVNR ddPTM_K562_Paclitaxel_30min_R1 1 KAYSFCGTVEYMAPEVVNR 19 1 B4DG22;B1AXG1;B7ZB17;P51812;Q9UK32-2;Q9UK32;E9PGT3;Q15418-3;Q15418-4;Q15418;Q15418-2 B4DG22;E9PGT3 RPS6KA3;RPS6KA6;RPS6KA1 Ribosomal protein S6 kinase alpha-3;Ribosomal protein S6 kinase alpha-6;Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1 1 KAY(0.443)S(0.554)FCGT(0.003)VEYMAPEVVNR 73.76 0.0076116 34060000 2922 2423.9 4630.2 2886.9 2085 1954.4 2130.7 3128 3124 4651.8 TRUE FALSE 2962.917015 2688.549599 3461.248744 2701.747155 2369.012299 2300.985399 2534.989202 2862.256876 3424.074158 3703.760607 0.799975303 0.725897239 0.934522803 0.729460525 0.639623494 0.621256513 0.684436569 0.772797483 0.924485819 1 11.85477514 -8.816926406 2.75255322 0.996217554 0.732460305 0.549022254 0.08307082 0.2114817 3.050753475 0.086975087 0.024146645 1.52E-09 8.816926406 -0.263757249 KCS(ph)LPAEEDSVLEK ddPTM_K562_Paclitaxel_30min_R1 1 KCSLPAEEDSVLEK 14 1 E7EVA0;P27816;P27816-6 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 KCS(1)LPAEEDSVLEK 123.42 0.0011619 8208100 1794.6 1083.6 4143.4 2016.3 1554.4 1232.9 1366.8 2040.2 1944.7 2916.4 TRUE FALSE 1819.729937 1201.911112 3097.347425 1886.983543 1766.135596 1451.537504 1626.143165 1866.872275 2131.497124 2322.036079 0.78367858 0.517610869 1.333892894 0.812641784 0.760597827 0.625114104 0.700309172 0.803980736 0.917943155 1 11.18117467 -8.90617351 2.988700908 0.997302856 0.791547389 0.105222236 0.201700363 0.576259709 10.33837245 0.198193052 0.053500919 1.24E-09 8.90617351 -0.205755467 KDDDS(ph)DDESQSSHTGK ddPTM_K562_Paclitaxel_30min_R1 2 KDDDSDDESQSSHTGK 16 1 O94874-3;O94874;O94874-2 O94874-3 UFL1 E3 UFM1-protein ligase 1 1 KDDDS(0.995)DDES(0.005)QSSHTGK;KDDDS(0.998)DDES(0.002)QSSHTGK 120.66 0.00014316 31988000 5997.4 3448.9 13375.7 7030.8 4834 3562.4 3487.6 5887 6028 9012.1 TRUE FALSE 6081.382104 3825.462565 9998.839106 6579.875957 5492.47264 4194.141621 4149.353894 5386.862604 6607.016334 7175.429073 0.847528704 0.533133632 1.393483094 0.917001045 0.765455638 0.5845144 0.578272582 0.75073735 0.92078345 1 12.80884939 -6.785744386 5.294532783 0.733954431 0.929433217 0.090159389 0.230653868 0.392405804 29.71628135 0.073745739 0.087392959 1.64E-07 6.785744386 0.195478786 KDIST(ph)EMIRT(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 KDISTEMIRTK 11 2 Q15398;Q15398-3;G3V543;G3V4E5 Q15398 DLGAP5 Disks large-associated protein 5 2 KDIS(0.002)T(0.998)EMIRT(0.999)K 88.596 0.0071009 26417000 3527.7 4694.1 3904.9 4387.5 3576.5 4155.5 4357.7 4480.5 4491.2 4546.9 TRUE FALSE 3577.098684 5206.617712 2919.0597 4106.105388 4063.679851 4892.419579 5184.550826 4099.853559 4922.599827 3620.239284 0.988083495 1.43819712 0.806316785 1.134208284 1.122489297 1.351407792 1.432101698 1.132481374 1.359744327 1 11.82186934 -7.149825507 5.95228263 1.273986828 1.1001833 0.147868581 0.186532311 0.432832631 20.02850377 0.059824184 0.05992318 7.08E-08 7.149825507 -0.173803528 KDMRNNY(ph)LKSR ddPTM_K562_Paclitaxel_30min_R1 1 KDMRNNYLKSR 11 3 Q14028-2;Q14028-4;Q14028 Q14028-2 CNGB1 Cyclic nucleotide-gated cation channel beta-1 1 KDMRNNY(0.996)LKS(0.004)R 43.442 0.030979 0 286.6 230.64 259.14 341.05 287.25 268.26 268.65 284.87 253.68 175.14 TRUE FALSE 290.6132842 255.8220552 193.716902 319.1765795 326.3783132 315.8321444 319.6249351 260.6685154 278.0470975 139.4463719 2.084050523 1.834555118 1.389185673 2.288884072 2.340529257 2.264900407 2.292099327 1.869310129 1.993935688 1 7.123566588 -9.664505791 1.421607327 0.999768598 2.051659417 0.56270319 0.275706246 4.276725916 8.294206688 0.294418499 0.085419918 2.17E-10 9.664505791 1.051890819 KDNDFIYHDR ddPTM_K562_Paclitaxel_30min_R1 2 KDNDFIYHDR 10 1 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 ; 90.653 0.0075835 27642000 34245.4 29338.3 57227 38498.3 31066 27066.5 27728.2 39038.4 21805.2 47513 FALSE TRUE 34724.94126 32541.55481 42779.33608 36029.19135 35297.71515 31866.36374 32989.4812 35721.84425 23899.68689 37829.82452 0.917924989 0.860208981 1.130836228 0.952401757 0.933065791 0.842360866 0.872049543 0.944277292 0.631768378 1 15.20723646 -7.088680503 2.924482651 0.855236846 0.968671526 0.177718138 0.109689067 0.472416269 7.849178359 0.037833212 0.0389551 8.15E-08 7.088680503 0.11343468 KDS(ph)EEEVSLLGSQDIEEGNHQVEDGCR ddPTM_K562_Paclitaxel_30min_R1 2 KDSEEEVSLLGSQDIEEGNHQVEDGCR 27 1 Q9Y487 Q9Y487 ATP6V0A2 V-type proton ATPase 116 kDa subunit a isoform 2 1 KDS(0.997)EEEVS(0.003)LLGSQDIEEGNHQVEDGCR;KDS(0.986)EEEVS(0.014)LLGSQDIEEGNHQVEDGCR 98.135 4.26E-08 51946000 1360.54 1274.45 2739.2 1870.38 1264.39 1329.93 1079.24 1453.78 1194.12 1951.92 TRUE FALSE 1379.591758 1413.598761 2047.655082 1750.422198 1436.621324 1565.774412 1284.020156 1330.272315 1308.820561 1554.117633 0.887700988 0.90958286 1.317567628 1.126312553 0.924396773 1.007500578 0.826205256 0.855966297 0.842163125 1 10.60187999 -7.321790218 1.721133955 0.874357523 1.058289803 0.238485643 0.126479281 0.519823132 3.047047749 0.058805633 0.051293796 4.77E-08 7.321790218 0.183932279 KDS(ph)PHS(ph)RS(ph)GSSVS(ph)S(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 KDSPHSRSGSSVSSR 15 2 F8WF16;B7Z8L1;F8W6A0;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-9;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8;F8VPY7;F8VWU8 F8WF16;F8VWU8 PPHLN1 Periphilin-1 5 KDS(1)PHS(0.99)RS(0.775)GS(0.404)S(0.404)VS(0.714)S(0.714)R 54.784 0.027436 8829900 1057.8 873.05 1234.9 1118.7 1092.8 1024.7 750.82 1190.7 1088.3 1155.4 TRUE FALSE 1072.612464 968.3725515 923.134222 1046.951589 1241.657861 1206.416157 893.2841755 1089.542603 1192.836078 919.9288458 1.165973291 1.052660275 1.003484374 1.138078879 1.3497325 1.311423338 0.971036162 1.184377039 1.29666124 1 9.845378466 -6.520271195 24.98852592 1.195197213 1.071714765 0.139782675 0.122496918 188.4663606 1806112.117 0.03690057 0.048515678 3.02E-07 6.520271195 -0.123482448 KDS(ph)QNSSQHSVSSHR ddPTM_K562_Paclitaxel_30min_R1 1 KDSQNSSQHSVSSHR 15 1 A0A087WT53;Q96QZ7-7;Q96QZ7-6;Q96QZ7-2;Q96QZ7;A0A087WXD2;H7C5T8;H7C4U7;H7C535;Q96QZ7-4;Q96QZ7-3;Q96QZ7-5 A0A087WT53 MAGI1 "Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1" 1 KDS(0.814)QNS(0.08)S(0.106)QHSVSSHR 64.675 0.023288 1367700 473.03 288.55 1007.7 559.05 385.72 469.26 359.85 887.06 325.49 816.74 TRUE FALSE 479.6538794 320.0548648 753.2936719 523.1950352 438.2615943 552.4766723 428.129659 811.6987161 356.7547688 650.2879397 0.737602299 0.492174074 1.158400189 0.804559032 0.673950057 0.849587757 0.658369367 1.248214316 0.548610465 1 9.344934857 -2.2110932 0.055213728 1.248063903 5.01E-12 0.065086544 0.230173383 1122.519885 4.839084787 24.47024561 116.6828807 0.006150449 2.2110932 -1.248063903 KDS(ph)T(ph)S(ph)TPNNLPPSMMTR ddPTM_K562_Paclitaxel_30min_R1 1 KDSTSTPNNLPPSMMTR 17 1 Q96L34-2;Q96L34 Q96L34-2 MARK4 MAP/microtubule affinity-regulating kinase 4 3 KDS(0.911)T(0.696)S(0.696)T(0.696)PNNLPPS(0.001)MMT(0.001)R 50.024 0.02598 25406000 0 0 0 0 0 0 0 0 58.871 0 TRUE FALSE 0 0 0 0 0 0 0 0 64.52582259 0 0 KDSQNSS(ph)QHSVSSHR ddPTM_K562_Paclitaxel_30min_R1 1 KDSQNSSQHSVSSHR 15 1 A0A087WT53;Q96QZ7-7;Q96QZ7-6;Q96QZ7-2;Q96QZ7;A0A087WXD2;H7C5T8;H7C4U7;H7C535;Q96QZ7-4;Q96QZ7-3;Q96QZ7-5 A0A087WT53 MAGI1 "Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 1" 1 KDS(0.342)QNS(0.082)S(0.577)QHSVSSHR 85.909 0.0075555 1010300 377.74 172.79 617.79 317.69 283.37 179.92 263.28 271.81 481.71 470.41 TRUE FALSE 383.0295254 191.6557965 461.8212738 297.3147853 321.9697915 211.8262858 313.2360056 248.7180439 527.9803978 374.5401838 1.022666037 0.51170957 1.233035316 0.793812782 0.859640181 0.565563576 0.836321493 0.664062375 1.40967624 1 8.548976701 -8.756117043 24.99999924 1.204838149 0.808683889 0.340214473 0.219448912 126.8458397 595839.9879 0.149866579 0.052917952 1.75E-09 8.756117043 -0.39615426 KDSSGSVSPNT(ph)LSQEEGDQICLYHIR ddPTM_K562_Paclitaxel_30min_R1 2 KDSSGSVSPNTLSQEEGDQICLYHIR 26 1 H7C4T3;H7C4L8;G5E9U9;Q9H0J9 H7C4T3 PARP12 Poly [ADP-ribose] polymerase 12 1 KDS(0.001)S(0.001)GS(0.001)VS(0.161)PNT(0.822)LS(0.015)QEEGDQICLYHIR;KDS(0.004)S(0.004)GS(0.002)VS(0.038)PNT(0.94)LS(0.012)QEEGDQICLYHIR 105.61 1.78E-06 51861000 2847.53 2507.38 5471.2 2807.27 2531.93 2371.03 2103.06 3181.04 3151.74 3754.26 TRUE FALSE 2887.404205 2781.144228 4089.927893 2627.224267 2876.821732 2791.49888 2502.104656 2910.790797 3454.478709 2989.139751 0.965964942 0.93041626 1.368262521 0.878923197 0.962424634 0.933880351 0.837065131 0.973788795 1.155676548 1 11.54551463 KEDSTHLSDS(ph)S(ph)S(ph)Y(ph)NIVTK ddPTM_K562_Paclitaxel_30min_R1 1 KEDSTHLSDSSSYNIVTK 18 1 F5GY04;Q01954 F5GY04 BNC1 Zinc finger protein basonuclin-1 4 KEDS(0.006)T(0.019)HLS(0.112)DS(0.884)S(0.915)S(0.915)Y(0.938)NIVT(0.211)K 43.37 0.030152 21390000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 KEEENADS(ph)DDEGELQDLLSQDWR ddPTM_K562_Paclitaxel_30min_R1 1 KEEENADSDDEGELQDLLSQDWR 23 1 J3QQQ3;Q96NB3 J3QQQ3 ZNF830 Zinc finger protein 830 1 KEEENADS(1)DDEGELQDLLSQDWR 108.69 1.72E-05 24609000 1482.9 1306.3 2519.4 1536.3 1329.5 1199.4 1115.6 1417.6 1256.5 1858.9 TRUE FALSE 1503.665175 1448.926252 1883.34631 1437.768594 1510.600409 1412.09675 1327.279276 1297.166032 1377.192439 1480.05516 1.015952119 0.978967738 1.272483865 0.971429061 1.020637913 0.954083867 0.896776899 0.87643087 0.930500752 1 10.53143523 -7.052649799 1.572774862 0.917429047 1.072916785 0.357254579 0.083457139 0.405777189 2.031459822 0.034129773 0.036397263 8.86E-08 7.052649799 0.155487738 KEEPSQNDIS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 KEEPSQNDISPK 12 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 KEEPS(0.003)QNDIS(0.997)PK 102.28 0.017359 7065900 2772.2 2695.7 5663.9 3511.5 2845.6 2922.4 2607.7 3756.4 4296.9 4751.2 TRUE FALSE 2811.019353 2990.025642 4233.978395 3286.288107 3233.218896 3440.646607 3102.497462 3437.270373 4709.636444 3782.902832 0.743085265 0.790405087 1.119240589 0.868721258 0.854692558 0.909525505 0.820136704 0.908633006 1.244979491 1 11.885278 -8.655008 7.111765443 1.119915022 0.878440079 0.448907263 0.109243776 0.193018344 11.25798395 0.075427726 0.027889068 2.21E-09 8.655008 -0.241474943 KEES(ph)EES(ph)DDDMGFGLFD ddPTM_K562_Paclitaxel_30min_R1 1 KEESEESDDDMGFGLFD 17 1 P05387;H0YDD8;P05386-2;P05386 P05387 RPLP2;RPLP1 60S acidic ribosomal protein P2;60S acidic ribosomal protein P1 2 KEES(1)EES(1)DDDMGFGLFD 54.764 0.029552 0 1621.2 1400.9 2532.7 1994.2 1293.8 1222.7 1038.2 1657.5 1134.6 2120.9 TRUE FALSE 1643.901802 1553.855 1893.288561 1866.300938 1470.037464 1439.528677 1235.19303 1516.685029 1243.5834 1688.659416 0.97349518 0.920170749 1.121178459 1.105196773 0.870535201 0.852468333 0.73146368 0.898159223 0.736432337 1 10.72166267 -6.885010034 5.753791027 0.833727627 1.027889357 0.492596303 0.090313829 0.173984202 8.111251932 0.028236677 0.032208078 1.30E-07 6.885010034 0.19416173 KEEVY(ph)KQLMS(ph)ELETLPRDVSR ddPTM_K562_Paclitaxel_30min_R1 1 KEEVYKQLMSELETLPRDVSR 21 3 O60826 O60826 CCDC22 Coiled-coil domain-containing protein 22 2 KEEVY(0.999)KQLMS(0.985)ELET(0.005)LPRDVS(0.01)R 43.164 0.023519 8182600 0 0 162.48 0 0 0 0 0 0 0 TRUE FALSE 0 0 121.4599145 0 0 0 0 0 0 0 0 KEKPELSEPSHLNGPSS(ph)DPEAAFLSR ddPTM_K562_Paclitaxel_30min_R1 1 KEKPELSEPSHLNGPSSDPEAAFLSR 26 2 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 KEKPELS(0.001)EPS(0.001)HLNGPS(0.299)S(0.698)DPEAAFLS(0.002)R 53.665 0.007683 43913000 1522.1 1050.7 3708.8 1809.7 1341.1 1102.4 819.58 1929 1697.8 2348.9 TRUE FALSE 1543.414096 1165.418979 2772.46757 1693.633942 1523.780525 1297.895162 975.0910265 1765.11941 1860.881276 1870.192891 0.825270005 0.623154427 1.482450064 0.905593188 0.814771852 0.693989999 0.521385271 0.943816768 0.99502104 1 10.86897136 -6.527602247 20.10291509 0.808477143 0.983651124 0.067302386 0.24273606 29.61162233 126014.8572 0.074613499 0.097059867 2.97E-07 6.527602247 0.175173981 KEPAITSQNS(ph)PEAR ddPTM_K562_Paclitaxel_30min_R1 1 KEPAITSQNSPEAR 14 1 A0A1W2PRL9;A0A1W2PPZ5;P23193-2;P23193;E5RIS7 A0A1W2PRL9 TCEA1 Transcription elongation factor A protein 1 1 KEPAIT(0.001)S(0.007)QNS(0.992)PEAR 75.017 0.025102 9882200 1483.6 1356.4 2461.6 1778.5 1315.2 1376.7 1325.4 1688.2 1105.1 1930.4 TRUE FALSE 1504.374977 1504.496339 1840.138635 1664.43497 1494.352507 1620.838415 1576.887731 1544.776873 1211.249793 1536.98342 0.978784128 0.978863089 1.197240394 1.082923178 0.972263257 1.054558165 1.025962746 1.005070616 0.788069524 1 10.58588589 -8.57574817 8.83826017 0.893792469 1.042491836 0.354881012 0.078423878 0.334332923 51.09105194 0.05344479 0.020096061 2.66E-09 8.57574817 0.148699367 KESYSVYVYK ddPTM_K562_Paclitaxel_30min_R1 1 KESYSVYVYK 10 1 Q99880;Q99877;Q5QNW6-2;P57053;O60814;P58876;P62807;Q5QNW6;Q93079;U3KQK0;Q99879 Q99880 HIST1H2BL;HIST1H2BN;HIST2H2BF;H2BFS;HIST1H2BK;HIST1H2BD;HIST1H2BC;HIST1H2BH;HIST1H2BM Histone H2B type 1-L;Histone H2B type 1-N;Histone H2B type 2-F;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-M 0 103.91 0.011333 7109300 2943.9 2543.9 4573 2908 2512.8 2277.7 2665.5 3979.8 3660.3 4871.9 FALSE TRUE 2985.123683 2821.651605 3418.489592 2721.493896 2855.085902 2681.618115 3171.26471 3641.691149 4011.88817 3879.004106 0.7695593 0.727416504 0.88128022 0.701596034 0.736035803 0.691316132 0.817546108 0.938821164 1.034257263 1 11.92147059 -8.293320652 2.340072091 1.012700438 0.75313962 0.818087387 0.051176816 0.128994005 1.345220011 0.035941143 0.014859873 5.09E-09 8.293320652 -0.259560818 KET(ph)ES(ph)EAEDNLDDLEK ddPTM_K562_Paclitaxel_30min_R1 1 KETESEAEDNLDDLEK 16 1 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 2 KET(1)ES(1)EAEDNLDDLEK 92.897 0.011012 11346000 2829.8 1734.3 6526.4 3033.9 2086.7 1847.9 1591.7 2939 1873.5 5370.3 TRUE FALSE 2869.425931 1923.656739 4878.729603 2839.319233 2370.943868 2175.599119 1893.716766 2689.313605 2053.458046 4275.829912 0.671080466 0.449890847 1.141001794 0.664039331 0.554499107 0.508813298 0.442888703 0.628957106 0.480247832 1 12.06198875 -11.09912962 4.989539764 1.00001222 0.618068989 0.262928336 0.192988442 2.72E-05 4.92E-06 0.193965546 0.047042051 7.96E-12 11.09912962 -0.38194323 KET(ph)ESEAEDNLDDLEK ddPTM_K562_Paclitaxel_30min_R1 2 KETESEAEDNLDDLEK 16 1 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 KET(0.754)ES(0.246)EAEDNLDDLEK;KET(0.726)ES(0.274)EAEDNLDDLEK 119.62 0.00038081 51964000 3085.4 2235.29 6588.4 3224.9 1995.93 1617.69 1760.65 3626.8 2682.8 5163.5 TRUE FALSE 3128.605119 2479.346521 4925.076936 3018.069348 2267.809457 1904.564608 2094.724146 3318.680702 2940.494927 4111.175866 0.761000069 0.60307479 1.197972818 0.734113413 0.551620639 0.463265175 0.50951947 0.807233942 0.715244257 1 12.00533537 -6.517888254 24.91423337 0.645745574 0.851775328 0.12752129 0.201758697 370.5961354 1850147.321 0.05976379 0.079417131 3.03E-07 6.517888254 0.206029755 KETES(ph)EAEDNLDDLEK ddPTM_K562_Paclitaxel_30min_R1 3 KETESEAEDNLDDLEK 16 1 A9Z1X7;Q8IYB3-2;Q8IYB3 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 KET(0.033)ES(0.967)EAEDNLDDLEK;KET(0.041)ES(0.959)EAEDNLDDLEK;KET(0.022)ES(0.978)EAEDNLDDLEK 138.28 1.10E-08 272004000 10787.1 6797.6 23829.4 11353.2 7039.6 5266.55 6092.2 10122.5 8790.2 15154.5 TRUE FALSE 10938.15268 7539.784956 17813.37325 10625.05657 7998.512701 6200.498696 7248.163147 9262.530442 9634.537986 12066.00458 0.906526482 0.624878344 1.476327407 0.880577866 0.662896541 0.513881679 0.600709464 0.767655141 0.798486187 1 13.55866041 -6.596726557 5.484396205 0.69843053 0.997489209 0.225253604 0.229860105 0.283540808 15.15523322 0.069423446 0.090527988 2.53E-07 6.596726557 0.299058679 KETQS(ph)PEQVK ddPTM_K562_Paclitaxel_30min_R1 1 KETQSPEQVK 10 1 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 KET(0.056)QS(0.944)PEQVK 116.19 0.0073949 11229000 3339.1 2447.4 7128.5 4059.7 2737.7 1961.9 2084.5 3403 2296.6 4398.2 TRUE FALSE 3385.857702 2714.615409 5328.822011 3799.329013 3110.62109 2309.815419 2480.022993 3113.893909 2517.198691 3501.844426 0.96687839 0.775195891 1.521718661 1.084950829 0.888280778 0.659599667 0.708204789 0.889215376 0.718820823 1 11.77389928 -6.877581506 3.860173199 0.782282862 1.095817458 0.328632605 0.196292728 0.267303024 7.457716146 0.064768613 0.074837848 1.33E-07 6.877581506 0.313534596 KFELLPTPPLS(ph)PSRR ddPTM_K562_Paclitaxel_30min_R1 1 KFELLPTPPLSPSRR 15 2 A0A0B4J1R1;P01106;H0YBG3;H0YBT0;A0A087WUS5;P01106-2 A0A0B4J1R1 MYC Myc proto-oncogene protein 1 KFELLPT(0.004)PPLS(0.82)PS(0.176)RR 63.578 0.028143 16821000 1966.6 1893.8 3335.2 2352.8 1458.6 1675.7 1588 2239.3 1726.9 2560.3 TRUE FALSE 1994.138467 2100.571488 2493.187511 2201.901939 1657.286014 1972.861867 1889.31471 2049.057488 1892.776461 2038.509455 0.978233612 1.03044481 1.22304437 1.080152919 0.812989123 0.96779628 0.926811846 1.005174385 0.928510023 1 10.99329893 -6.640920284 12.05213627 0.941221668 1.08569132 0.436437712 0.076505479 0.404552186 40.57390809 0.023162624 0.029902206 2.29E-07 6.640920284 0.144469652 KFELLPTPPLSPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 KFELLPTPPLSPSR 14 1 A0A0B4J1R1;P01106;H0YBG3;H0YBT0;A0A087WUS5;P01106-2;P04198 A0A0B4J1R1 MYC;MYCN Myc proto-oncogene protein;N-myc proto-oncogene protein 1 KFELLPTPPLS(0.036)PS(0.964)R;KFELLPT(0.007)PPLS(0.143)PS(0.851)R 118.02 0.00099904 18424100 9124.4 8126 13868.9 9847.1 7397.9 6815.7 8242.8 9666.5 9071.5 11923.5 TRUE FALSE 9252.169751 9013.22416 10367.52467 9215.55108 8405.619227 8024.368698 9806.82827 8845.270489 9942.858108 9493.484155 0.974581049 0.949411619 1.092067411 0.970723807 0.885409307 0.845250128 1.033006229 0.931720151 1.047334987 1 13.21272195 -11.21160104 7.976995776 1.000000017 0.967532433 0.015123292 0.070379079 2.16E-08 2.25E-09 0.070703534 0.017148117 6.14E-12 11.21160104 -0.032467584 KFLYY(ph)EMGY(ph)KS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 KFLYYEMGYKSR 12 2 P43304-2;P43304 P43304-2 GPD2 "Glycerol-3-phosphate dehydrogenase, mitochondrial" 3 KFLY(0.23)Y(0.784)EMGY(0.988)KS(0.998)R 46.319 0.029652 5156300 1027.6 1182.3 1707.5 1593.7 1218.1 1093.6 1055.9 1173.1 915.31 983.35 TRUE FALSE 1041.98957 1311.387512 1276.420507 1491.487215 1384.025843 1287.534605 1256.251513 1073.437833 1003.229615 782.9427302 1.330863076 1.674946917 1.630285917 1.904976134 1.767722963 1.644481206 1.60452542 1.371029823 1.281357597 1 9.612762973 -8.706359794 1.128994053 1.016763786 1.677461481 0.707624077 0.138247283 0.254999267 0.651469961 0.13540025 0.045372467 1.97E-09 8.706359794 0.660697695 KFPDRLAEDEGDS(ph)EPEAVGQSR ddPTM_K562_Paclitaxel_30min_R1 1 KFPDRLAEDEGDSEPEAVGQSR 22 2 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 KFPDRLAEDEGDS(1)EPEAVGQSR 50.956 0.022015 21337000 2261.7 1605.2 3155.7 2036.8 1813 1784.3 1270.4 1907.3 2992.2 2568.9 TRUE FALSE 2293.370778 1780.461164 2359.004506 1906.168764 2059.961294 2100.720552 1511.451768 1745.26296 3279.61418 2045.35677 1.121257089 0.870489291 1.153346223 0.931949278 1.007140331 1.027068032 0.738967299 0.853280457 1.603443579 1 10.9981368 -8.738985768 24.98978951 1.30172237 0.961315122 0.36374983 0.17921354 202.4564222 225325.6615 0.114839103 0.043334775 1.82E-09 8.738985768 -0.340407248 KFS(ph)S(ph)ASGASAR ddPTM_K562_Paclitaxel_30min_R1 1 KFSSASGASAR 11 1 H7C167 H7C167 ANLN 2 KFS(1)S(1)ASGASAR 88.803 0.02143 77606000 135.64 178.11 134.98 178.7 0 61.883 0 0 0 92.536 TRUE FALSE 137.5393785 197.5566521 100.9026296 167.2389818 0 72.85708117 0 0 0 73.67711241 1.866785681 2.681384295 1.369524759 2.269890559 0 0.988869932 0 0 0 1 6.203144615 -6.760011525 24.99999948 0.297773875 2.043833432 0.756661172 0.476342881 17.82984216 312174.3005 0.140221476 0.17134243 1.74E-07 6.760011525 1.746059557 KFSKEEPVSS(ph)GPEEAVGK ddPTM_K562_Paclitaxel_30min_R1 1 KFSKEEPVSSGPEEAVGK 18 2 O00567 O00567 NOP56 Nucleolar protein 56 1 KFSKEEPVS(0.163)S(0.837)GPEEAVGK 88.755 0.018599 17652000 1605.2 1202.2 4234.7 1699.6 923.78 1102.4 894.99 1270.4 1776.3 2183.4 TRUE FALSE 1627.677752 1333.460262 3165.597611 1590.595263 1049.614476 1297.895162 1064.80968 1162.47159 1946.921552 1738.421882 0.936296172 0.767052161 1.820960519 0.91496505 0.603774312 0.746593894 0.612515116 0.668693602 1.119936175 1 10.76356252 -6.513570314 24.91085745 0.763685472 1.172992014 0.246570045 0.296845755 560.6994365 1500523.317 0.086374189 0.11810352 3.06E-07 6.513570314 0.409306542 KGAGDGS(ph)DEEVDGKADGAEAKPAE ddPTM_K562_Paclitaxel_30min_R1 1 KGAGDGSDEEVDGKADGAEAKPAE 24 3 P35579-2;P35579 P35579-2 MYH9 Myosin-9 1 KGAGDGS(1)DEEVDGKADGAEAKPAE 66.19 0.0042768 50322000 2713.6 1580.9 8172.2 2564.6 1382.7 1053.8 795.27 2374 2243.4 4912.3 TRUE FALSE 2751.598772 1753.508008 6109.027038 2400.118035 1571.047149 1240.676634 946.1683309 2172.313882 2458.888594 3911.170564 0.703523083 0.448333301 1.561943397 0.613657215 0.401682086 0.317213636 0.241914362 0.55541272 0.62868355 1 11.93338474 -6.509771986 24.96147989 0.480208999 0.897111095 0.207073052 0.326845696 864.6945498 1646789.228 0.093408324 0.131574116 3.09E-07 6.509771986 0.416902096 KGAHAPQELPQAKGS(ph)DDELFLGGSNQDSVQGLGR ddPTM_K562_Paclitaxel_30min_R1 1 KGAHAPQELPQAKGSDDELFLGGSNQDSVQGLGR 34 2 Q96JB3-2;Q96JB3 Q96JB3-2 HIC2 Hypermethylated in cancer 2 protein 1 KGAHAPQELPQAKGS(0.994)DDELFLGGS(0.004)NQDS(0.001)VQGLGR 61.583 0.00020896 56070000 1170.6 916.25 2793.4 1509.9 1297.6 1001.3 649.9 1374.4 1416.2 1951.2 TRUE FALSE 1186.992012 1016.289274 2088.171622 1413.061772 1474.355089 1178.866496 773.2151323 1257.636141 1552.232338 1553.544369 0.764054143 0.654174605 1.344133881 0.909572845 0.949026702 0.758823835 0.497710363 0.809527019 0.999155459 1 10.60134773 -7.260147231 23.64793244 0.781430459 0.931709332 0.053501913 0.212836112 142.5817149 2609445.276 0.07540208 0.071435432 5.49E-08 7.260147231 0.150278873 KGDS(ph)SAEELKLATQLTGPVMPVR ddPTM_K562_Paclitaxel_30min_R1 1 KGDSSAEELKLATQLTGPVMPVR 23 2 P26373;P26373-2 P26373 RPL13 60S ribosomal protein L13 1 KGDS(0.5)S(0.5)AEELKLATQLTGPVMPVR 73.346 0.00057778 13818000 209.8 321.36 648.28 449.08 461.12 314.35 286.21 413.46 431.28 777.02 TRUE FALSE 212.7378473 356.4471716 484.6136962 420.2780188 523.9323508 370.0955588 340.5168534 378.3339923 472.706371 618.6628975 0.34386715 0.576157344 0.783324324 0.679332833 0.846878571 0.598218449 0.55040775 0.611534963 0.764077453 1 9.273009705 -15 0.188608459 2.49487095 0.579516665 0.438035044 0.129781149 149.5558694 1.459646018 84.1295185 0.389704418 1.00E-15 15 -1.915354285 KGDVEGSQS(ph)QDEGEGSGESER ddPTM_K562_Paclitaxel_30min_R1 4 KGDVEGSQSQDEGEGSGESER 21 1 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 1 KGDVEGS(0.001)QS(0.979)QDEGEGS(0.017)GES(0.003)ER;KGDVEGSQS(0.999)QDEGEGS(0.001)GESER;KGDVEGS(0.03)QS(0.965)QDEGEGS(0.004)GES(0.001)ER;KGDVEGS(0.083)QS(0.916)QDEGEGS(0.001)GESER 137.94 3.42E-12 119483300 7283.4 5544.06 12222.7 7315.61 5888.5 4872.95 4425.05 7164.17 5663.33 9372.7 TRUE FALSE 7385.390071 6149.37922 9136.928217 6846.419518 6690.613393 5737.099263 5264.680137 6555.529041 6207.318151 7462.538595 0.989661893 0.824033155 1.224372658 0.917438407 0.896559972 0.768786545 0.705481127 0.87845831 0.831797125 1 12.86545077 -6.776618387 2.738146254 0.823775571 1.000250447 0.273623497 0.11728652 0.330483791 5.078776636 0.03786884 0.04712961 1.67E-07 6.776618387 0.176474876 KGDVEGSQSQDEGEGSGESERGSGSQS(ph)SVPSVDQFTGVGIR ddPTM_K562_Paclitaxel_30min_R1 1 KGDVEGSQSQDEGEGSGESERGSGSQSSVPSVDQFTGVGIR 41 2 Q9UQE7 Q9UQE7 SMC3 Structural maintenance of chromosomes protein 3 1 KGDVEGSQS(0.001)QDEGEGS(0.101)GES(0.101)ERGS(0.101)GS(0.088)QS(0.31)S(0.269)VPS(0.027)VDQFT(0.002)GVGIR 43.384 0.0035089 14748000 464.08 465.97 759.45 487.53 469.15 603.08 341.37 495.39 753.61 524.27 TRUE FALSE 470.5785518 516.8461804 567.7174547 456.2620079 533.0561728 710.0277703 406.1431754 453.3035274 825.9976077 417.4234862 1.12734086 1.23818184 1.360051539 1.093043451 1.277015286 1.70097705 0.972976339 1.085955971 1.978800032 1 8.705367965 -7.001924661 24.9540928 1.347391812 1.214009064 0.047967116 0.299494969 291.8411173 3783934.563 0.092494798 0.103279203 9.96E-08 7.001924661 -0.133382748 KGEMPVSGLAVGSTLPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 KGEMPVSGLAVGSTLPSPR 19 1 Q3T8J9-3 Q3T8J9-3 GON4L GON-4-like protein 1 KGEMPVSGLAVGS(0.001)T(0.017)LPS(0.983)PR;KGEMPVSGLAVGS(0.003)T(0.007)LPS(0.991)PR 140.13 3.61E-13 24067000 3372.2 3116.1 5763.6 3939.2 2743.1 3168.6 2722 3796.2 3641.8 4948.3 TRUE FALSE 3419.421204 3456.326336 4308.507897 3686.557343 3116.756661 3730.506721 3238.48529 3473.689115 3991.611162 3939.833744 0.867910025 0.877277205 1.093576069 0.935713937 0.791088372 0.946869072 0.821985267 0.881684188 1.013142031 1 11.94391904 -8.766763153 24.91812916 1.006571086 0.903827409 0.223003444 0.078008828 219.9908688 1029617.883 0.071385093 0.020573935 1.71E-09 8.766763153 -0.102743677 KGGEFDEFVNDDT(ph)DDDLPISK ddPTM_K562_Paclitaxel_30min_R1 2 KGGEFDEFVNDDTDDDLPISK 21 1 Q6PD62 Q6PD62 CTR9 RNA polymerase-associated protein CTR9 homolog 1 KGGEFDEFVNDDT(1)DDDLPISK;KGGEFDEFVNDDT(1)DDDLPISK 121.97 1.22E-06 104826000 9727.7 6512.3 20558.4 9831.7 7400.7 6235.9 5025.5 9675 10069.8 13988 TRUE FALSE 9863.917813 7223.334937 15368.17766 9201.138767 8408.800635 7341.749309 5979.06239 8853.048361 11037.04928 11137.23792 0.885670027 0.648575077 1.379891295 0.826159846 0.755016701 0.659207369 0.536853251 0.794905202 0.991004175 1 13.44310386 -6.508882673 24.69060326 0.762868253 0.966419596 0.121765378 0.212060914 1068.592319 1885114.374 0.061730752 0.087497427 3.10E-07 6.508882673 0.203551342 KGGST(ph)SSSPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 KGGSTSSSPSR 11 1 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 2 KGGS(0.267)T(0.353)S(0.132)S(0.195)S(0.053)PS(1)R 86.772 0.01988 99154000 352.46 223.36 345.71 311.81 234.2 422.62 191.26 210.8 354.75 300.74 TRUE FALSE 357.3955274 247.7472002 258.4312348 291.8119022 266.102005 497.5657231 227.5505866 192.8912242 388.8253226 239.4490229 1.492574591 1.034655298 1.079274543 1.218680697 1.11130963 2.077960967 0.950309105 0.805562795 1.623833406 1 7.903574738 -11.64919747 2.56374624 0.968653354 1.248830473 0.045936862 0.356025035 75327796.08 64897455.52 15593085.6 0.091367801 2.24E-12 11.64919747 0.280177118 KGGSTSSS(ph)PS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 KGGSTSSSPSR 11 1 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 2 KGGS(0.171)T(0.257)S(0.117)S(0.18)S(0.275)PS(1)R 100.04 0.010731 96719000 0 152.55 57.59 0 64.999 153.88 127.33 129.11 0 127.11 TRUE FALSE 0 169.2059249 43.05069224 0 73.85296424 181.1684574 151.4902028 118.1412996 0 101.2049122 0 1.671914151 0.425381449 0 0.729736953 1.790115257 1.496866105 1.167347484 0 1 6.661135506 -7.016649882 24.68610259 1.141502937 0.569932452 0.157650516 0.612829956 1207.204909 1789873.137 0.205518925 0.210816737 9.62E-08 7.016649882 -0.571570485 KGLPLGSAVSS(ph)PVLFSPVGR ddPTM_K562_Paclitaxel_30min_R1 1 KGLPLGSAVSSPVLFSPVGR 20 1 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 1 KGLPLGSAVS(0.055)S(0.945)PVLFSPVGR 135.86 3.45E-10 14395000 2743.1 2493.1 4291.3 3046.3 2598.4 2417.4 1930.3 2754.5 2602.2 3128.1 TRUE FALSE 2781.511863 2765.305089 3207.908241 2850.923953 2952.346071 2846.091948 2296.564348 2520.488032 2852.152937 2490.591503 1.116807738 1.110300539 1.288010594 1.144677459 1.18539956 1.142737356 0.922095954 1.012003787 1.14517091 1 11.2822727 -7.605714274 7.858335592 1.021234485 1.170343096 0.520098346 0.068520644 0.204370994 16.85553047 0.026721028 0.020650208 2.48E-08 7.605714274 0.149108611 KGLPLGSAVSSPVLFS(ph)PVGR ddPTM_K562_Paclitaxel_30min_R1 1 KGLPLGSAVSSPVLFSPVGR 20 1 Q8WUM0 Q8WUM0 NUP133 Nuclear pore complex protein Nup133 1 KGLPLGSAVS(0.001)S(0.017)PVLFS(0.983)PVGR 111.72 0.0001065 20181000 3168.9 2871.4 4073.9 3314.2 2606.5 2539 2559.1 3425.1 3122.8 4135.2 TRUE FALSE 3213.274377 3184.909162 3045.39356 3101.642046 2961.549428 2989.256001 3044.675866 3134.116376 3422.758893 3292.44397 0.975954156 0.96733891 0.92496443 0.942048543 0.899498809 0.907914008 0.924746448 0.951911833 1.039579997 1 11.68494317 -8.650806401 4.973145004 1.018854423 0.933787885 0.657609431 0.024151907 0.131369828 5.027006437 0.019400566 0.006778846 2.23E-09 8.650806401 -0.085066538 KGPGQPSS(ph)PQRLDR ddPTM_K562_Paclitaxel_30min_R1 1 KGPGQPSSPQRLDR 14 2 O95400 O95400 CD2BP2 CD2 antigen cytoplasmic tail-binding protein 2 1 KGPGQPS(0.131)S(0.869)PQRLDR 132.25 0.0003713 139770000 2926.1 2724.5 5150.9 3360.6 2514.9 2623 2173.1 3466.6 2772.8 3767.4 TRUE FALSE 2967.074428 3021.970124 3850.491589 3145.066157 2857.471958 3088.152221 2585.434381 3172.090692 3039.139829 2999.601812 0.989156099 1.007457094 1.283667577 1.048494552 0.952617093 1.029520721 0.861925863 1.057503926 1.013181089 1 11.55055528 -6.527324693 21.86773259 0.986104803 1.098371735 0.231149527 0.088870068 37.7895483 185864.1008 0.02677861 0.03478814 2.97E-07 6.527324693 0.112266932 KGQGGAGAGDDEEED ddPTM_K562_Paclitaxel_30min_R1 3 KGQGGAGAGDDEEED 15 1 P46781 P46781 RPS9 40S ribosomal protein S9 0 ;; 106.67 0.0025381 12488400 7260.8 5538.2 12822.3 7627 5745.6 5305.56 4504.53 7305.4 6998.3 8810.7 FALSE TRUE 7362.473601 6142.879405 9585.151781 7137.838357 6528.247994 6246.426572 5359.241052 6684.760671 7670.517984 7015.074504 1.049521797 0.875668448 1.36636493 1.017500007 0.930602803 0.890429114 0.763960675 0.95291371 1.093433574 1 12.77624271 -6.598693854 4.9570838 0.926545624 1.092272243 0.20908193 0.136497319 0.314346238 14.10354192 0.041977345 0.054995417 2.52E-07 6.598693854 0.16572662 KGRS(ph)PDELPSAGGDGGK ddPTM_K562_Paclitaxel_30min_R1 1 KGRSPDELPSAGGDGGK 17 2 B4E2I7;A0A2R8Y5N1;A0A140T8Z0;A0A0G2JH68;O60610-2;O60610-3;O60610 B4E2I7 DIAPH1 Protein diaphanous homolog 1 1 KGRS(0.998)PDELPS(0.002)AGGDGGK 62.813 0.022636 9819000 3971.4 2516.9 8945.2 4337.3 3314.4 2743.7 1892.8 4021.5 4153.4 6197.3 TRUE FALSE 4027.011853 2791.703654 6686.873627 4059.124991 3765.877393 3230.256672 2251.948919 3679.848474 4552.352628 4934.286858 0.816128443 0.565776521 1.355185424 0.822636605 0.763206012 0.654655225 0.456387921 0.745771087 0.92259586 1 12.26862587 KGSTPDFT(ph)FY(ph)DS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 KGSTPDFTFYDSR 13 1 P56545-2 P56545-2 3 KGS(0.008)T(0.008)PDFT(0.987)FY(0.998)DS(0.999)R 41.743 0.031058 0 0 147.14 121.1 127.77 60.949 172.14 140.22 0 0 141.75 TRUE FALSE 0 163.2052428 90.52680725 119.5754041 69.25128568 202.666612 166.826013 0 0 112.8612722 0 1.446069494 0.802106918 1.059490131 0.613596536 1.795714403 1.478151094 0 0 1 6.818406707 -8.269321224 24.94255835 0.249999971 1.050090896 0.251775693 0.542060139 733.7758729 2322060.75 0.284237922 0.140460596 5.38E-09 8.269321224 0.800090925 KGTENGVNGTLTSNVADS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 KGTENGVNGTLTSNVADSPR 20 1 G3XAN4;Q15629-2;Q15629 G3XAN4 TRAM1 Translocating chain-associated membrane protein 1 1 KGTENGVNGTLTSNVADS(1)PR;KGTENGVNGTLTSNVADS(1)PR;KGTENGVNGTLTSNVADS(1)PR;KGTENGVNGTLTSNVADS(1)PR 232.2 6.36E-47 630226000 11518.1 9891.9 17579.8 12296.6 9257.8 9751.8 8591.8 12655.7 10717.4 15462.8 TRUE FALSE 11679.38894 10971.93109 13141.56207 11507.95111 10518.8691 11481.14481 10222.0492 11580.51929 11746.85416 12311.47287 0.948658951 0.891195652 1.067424036 0.934733905 0.854395669 0.932556561 0.830286458 0.940628259 0.954138817 1 13.58771575 -4.910718441 18.56906885 0.929881098 1.803026575 0.001145982 0.064562429 1380.861085 404354.7074 0.015881143 20577.3263 1.23E-05 4.910718441 0.873145476 KGVDLLLEGVQGES(ph)SPTRR ddPTM_K562_Paclitaxel_30min_R1 2 KGVDLLLEGVQGESSPTRR 19 2 F5H7T0;F6RJM5;Q96S38-2;Q96S38 F5H7T0 RPS6KC1 Ribosomal protein S6 kinase delta-1 1 KGVDLLLEGVQGES(0.457)S(0.457)PT(0.086)RR;KGVDLLLEGVQGES(0.686)S(0.293)PT(0.021)RR 112.88 0.0016686 53773000 2417.15 2079.92 4038.7 2665.1 1865.85 1936.83 2037.26 3185.8 2488.8 3547.1 TRUE FALSE 2450.997558 2307.012699 3019.080235 2494.172415 2120.010359 2280.299606 2423.81945 2915.146405 2727.86036 2824.199073 0.867855804 0.816873259 1.069004046 0.883143274 0.750658967 0.807414615 0.858232507 1.032202876 0.96588813 1 11.46362607 -8.254435471 24.56350565 0.999284129 0.864870824 0.376952825 0.079313312 487.9619111 1711347.167 0.041608866 0.023344882 5.57E-09 8.254435471 -0.134413305 KHDSGAADLER ddPTM_K562_Paclitaxel_30min_R1 2 KHDSGAADLER 11 1 J3QT56;Q9NX55-3;Q9NX55 J3QT56 HYPK Huntingtin-interacting protein K 0 ; 87.667 0.0097948 4731900 7450.4 7129 12357.3 8696.5 7712.3 6530.6 5943.9 8738.9 8376.4 10656.8 FALSE TRUE 7554.728586 7907.368329 9237.546782 8138.745414 8762.84583 7688.710216 7071.723996 7996.475898 9180.990647 8484.93831 0.8903693 0.931929973 1.088699345 0.959199126 1.03275304 0.906159825 0.833444362 0.942431825 1.082033871 1 13.05068846 -8.747994583 24.78282778 1.041016934 0.950238189 0.219421348 0.069992422 303.7621698 559932.8025 0.051461178 0.019200049 1.79E-09 8.747994583 -0.090778745 KHES(ph)PLLVTK ddPTM_K562_Paclitaxel_30min_R1 1 KHESPLLVTK 10 1 E9PEM3;H0Y6E6;Q92622-3;Q92622-2;Q92622 E9PEM3 KIAA0226 Run domain Beclin-1 interacting and cysteine-rich containing protein 1 KHES(1)PLLVTK 75.589 0.019104 0 3214 2686.9 7042.4 3725.3 2758.4 1976.6 2552.9 3315.7 3287.3 4781.6 TRUE FALSE 3259.005916 2980.264829 5264.459021 3486.375932 3134.14078 2327.122257 3037.299448 3034.010589 3603.059853 3807.107295 0.856032064 0.782816085 1.38279765 0.915754577 0.823234161 0.611257334 0.797797176 0.796933302 0.946403548 1 11.89447951 KHLEINPDHPIVETLR ddPTM_K562_Paclitaxel_30min_R1 2 KHLEINPDHPIVETLR 16 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ; 80.361 0.0068508 136285000 7653.7 7833.4 11593.1 8058.2 7195 5992.8 6672.1 10210.5 8574.3 10955.7 FALSE TRUE 7760.875414 8688.677103 8666.278523 7541.383119 8175.080812 7055.538937 7938.096144 9343.054293 9397.899826 8722.922326 0.88971048 0.996074111 0.993506327 0.864547778 0.937195186 0.808850368 0.91002715 1.071092226 1.077379744 1 13.09059583 -8.258897104 24.54096327 1.055676996 0.915381072 0.548377529 0.056142501 134.85175 1301763.561 0.029515274 0.016035754 5.51E-09 8.258897104 -0.140295925 KHLEINPDHSIIETLR ddPTM_K562_Paclitaxel_30min_R1 1 KHLEINPDHSIIETLR 16 1 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 54.237 0.023605 27057000 2512.3 1871.5 3412 2317.7 1763.1 1931.1 1935.5 2596.2 2436.2 2821.7 FALSE TRUE 2547.479951 2075.836699 2550.598401 2169.053096 2003.26407 2273.553471 2302.751021 2375.636605 2670.207895 2246.635991 1.133908635 0.923975538 1.135296688 0.965467082 0.89167274 1.011981238 1.024977357 1.057419455 1.188536063 1 11.13355068 -8.357612237 3.178394615 1.10019176 1.006621321 0.123864819 0.085506149 0.466221494 8.910524582 0.05377061 0.022741186 4.39E-09 8.357612237 -0.093570439 KHRNRVAY(ph)LS(ph)LYYN ddPTM_K562_Paclitaxel_30min_R1 1 KHRNRVAYLSLYYN 14 3 Q8TCI5-3;Q8TCI5 Q8TCI5-3 PIFO Protein pitchfork 2 KHRNRVAY(0.704)LS(0.963)LY(0.053)Y(0.28)N 69.345 0.02937 7730800 480.22 419.78 514.95 718.23 431.59 527.06 526.16 772.45 686.74 714.6 TRUE FALSE 486.9445616 465.613 384.9445037 672.1659425 490.3798649 620.5266907 625.9961133 706.825551 752.7044454 568.9641277 0.855844047 0.81835212 0.67657078 1.181385451 0.861881867 1.090625332 1.10023828 1.242302487 1.322938317 1 9.152193886 -6.956471511 0.765252058 1.200451969 0.79068676 0.520561848 0.136629902 0.524406119 0.681824805 0.083496877 0.114242699 1.11E-07 6.956471511 -0.409765209 KHS(ph)PS(ph)PPPPTPTESR ddPTM_K562_Paclitaxel_30min_R1 1 KHSPSPPPPTPTESR 15 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 2 KHS(1)PS(1)PPPPTPTESR 62.035 0.020812 15257000 1325.2 925.62 2316.8 1457.2 1284.1 1040.2 915.08 1696.7 1222.4 1673 TRUE FALSE 1343.756889 1026.682322 1731.895186 1363.741714 1459.01616 1224.664865 1088.711653 1552.554745 1339.816982 1332.041682 1.008794925 0.770758405 1.300180925 1.023798079 1.095323202 0.919389297 0.817325515 1.165545167 1.00583713 1 10.37942351 -7.258115072 24.90538665 0.981697628 1.038405774 0.03863893 0.14495146 1274.911343 9551522.53 0.050376169 0.048359487 5.52E-08 7.258115072 0.056708146 KHS(ph)PSPPPPTPTESR ddPTM_K562_Paclitaxel_30min_R1 1 KHSPSPPPPTPTESR 15 1 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 1 KHS(0.96)PS(0.04)PPPPTPTESR 73.928 0.023391 12722000 1442.7 807.15 2171.7 1534.8 1116 1095 828.23 1317.5 1013.3 2048.5 TRUE FALSE 1462.902251 895.2773666 1623.427476 1436.364798 1268.018094 1289.182875 985.3823188 1205.570151 1110.631993 1631.014576 0.896927761 0.548908256 0.995348233 0.880657242 0.777441301 0.790417753 0.604152982 0.739153512 0.680945474 1 10.67155396 -7.348044303 3.013844951 0.732344726 0.819423999 0.026320666 0.144079703 0.794201438 14.02209369 0.053439791 0.04694741 4.49E-08 7.348044303 0.087079273 KICTLPSPPS(ph)PLASLAPVADSSTR ddPTM_K562_Paclitaxel_30min_R1 2 KICTLPSPPSPLASLAPVADSSTR 24 1 Q9UER7-3;Q9UER7;Q9UER7-2 Q9UER7-3 DAXX Death domain-associated protein 6 1 KICTLPS(0.139)PPS(0.86)PLASLAPVADSSTR;KICTLPSPPS(0.998)PLAS(0.001)LAPVADSSTR 101.22 1.40E-05 62076000 4516.7 4390.2 5574.1 4466.7 4033.7 3420.1 4347.1 6239.4 3713.4 7061.8 TRUE FALSE 4579.947735 4869.536883 4166.849515 4180.225854 4583.158231 4026.606714 5171.939532 5709.324025 4070.088662 5622.601284 0.814560291 0.866064769 0.741089276 0.743468306 0.815131289 0.716146586 0.919848175 1.015423954 0.723880008 1 12.45702203 -7.780038655 24.96220991 0.916073431 0.784324331 0.372027485 0.084022757 263.7576387 353987.5372 0.033987371 0.022959484 1.66E-08 7.780038655 -0.1317491 KIDTHPS(ph)PSHSSTVK ddPTM_K562_Paclitaxel_30min_R1 1 KIDTHPSPSHSSTVK 15 1 H0Y594;A0A0C4DG98;Q8NI27-2;Q8NI27;H7C477;H0Y7U4 H0Y594 THOC2 THO complex subunit 2 1 KIDT(0.261)HPS(0.574)PS(0.161)HS(0.001)S(0.001)T(0.002)VK 67.168 0.021271 104860000 5326.7 3826.7 10278 5513.5 4478.7 3428.3 3382 5773.2 3832.1 7312.4 TRUE FALSE 5401.290234 4244.512047 7683.191783 5159.888788 5088.774765 4036.260869 4023.716845 5282.730625 4200.190327 5822.128866 0.927717397 0.729030934 1.319653336 0.886254651 0.874040215 0.693262029 0.691107486 0.907353778 0.721418303 1 12.50733106 -6.776516052 3.008361481 0.791895897 0.979813015 0.17898838 0.164359716 0.410785966 7.652620174 0.052676596 0.065116141 1.67E-07 6.776516052 0.187917118 KIDTHPS(ph)PSHSSTVKDSLIELK ddPTM_K562_Paclitaxel_30min_R1 2 KIDTHPSPSHSSTVKDSLIELK 22 2 H0Y594;A0A0C4DG98;Q8NI27-2;Q8NI27 H0Y594 THOC2 THO complex subunit 2 1 KIDT(0.175)HPS(0.629)PS(0.175)HS(0.017)S(0.002)T(0.001)VKDSLIELK;KIDT(0.133)HPS(0.726)PS(0.133)HS(0.006)S(0.001)TVKDSLIELK 68.639 0.0026666 64997000 7641 4978.4 18255.7 8203.2 4898.7 4318.2 4206.3 8708.7 8272.7 12209.1 TRUE FALSE 7747.997575 5521.958548 13646.82275 7677.083468 5565.985876 5083.972139 5004.423467 7968.841577 9067.329798 9720.878718 0.797047036 0.568051378 1.403867196 0.789752006 0.572580529 0.522995121 0.514811841 0.819765559 0.932768535 1 13.24687102 -6.516868409 24.94831752 0.695848605 0.922380598 0.103284347 0.247977667 532.7267882 2211301.203 0.074470511 0.099511407 3.04E-07 6.516868409 0.226531993 KIDTHPSPS(ph)HSSTVK ddPTM_K562_Paclitaxel_30min_R1 1 KIDTHPSPSHSSTVK 15 1 H0Y594;A0A0C4DG98;Q8NI27-2;Q8NI27;H7C477;H0Y7U4 H0Y594 THOC2 THO complex subunit 2 1 KIDT(0.188)HPS(0.16)PS(0.641)HS(0.004)S(0.001)T(0.005)VK 64.04 0.023897 93497000 4792.6 4118.9 9811.4 4866.7 3687.4 3529.7 3264.9 5447.9 3677.5 7350.2 TRUE FALSE 4859.711186 4568.615431 7334.390724 4554.571645 4189.686308 4155.642736 3884.397731 4985.06689 4030.740307 5852.225205 0.830403994 0.780662957 1.253265291 0.778263222 0.715913377 0.710096175 0.663747138 0.851824172 0.688753451 1 12.51476957 -6.487987063 24.93352235 0.755038399 0.95043237 0.235530565 0.148522144 784.6164173 560685.0231 0.040859041 0.060569745 3.25E-07 6.487987063 0.19539397 KILS(ph)HMTHEVT(ph)EDFS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 KILSHMTHEVTEDFSPR 17 1 Q9H792 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 3 KILS(0.5)HMT(0.5)HEVT(0.999)EDFS(1)PR;KILS(0.5)HMT(0.5)HEVT(1)EDFS(1)PR 44.252 0.029554 91121000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 KIPDPDS(ph)DDVSEVDAR ddPTM_K562_Paclitaxel_30min_R1 1 KIPDPDSDDVSEVDAR 16 1 P51532;A0A2R8Y4C5;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A2R8YGG3;A0A2R8YG32;A0A2R8Y440;A0A2R8Y7F3;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF58;A0A2R8Y6V2;A0A2R8YDA1;A0A0A0MT49;P51532-5;P51532-2;P51532-3;P51532-4;A0A2R8Y7R0;A0A2R8YGP5;A0A2R8Y583 P51532 SMARCA4 Transcription activator BRG1 1 KIPDPDS(0.95)DDVS(0.05)EVDAR 103.2 0.0014881 15187000 1951.6 1660.5 3566.9 2183.3 1701.6 1733.8 1627.3 2413.2 2121.1 2739.1 TRUE FALSE 1978.928421 1841.799005 2666.39198 2043.27291 1933.386728 2041.265086 1936.07168 2208.183597 2324.841132 2180.869916 0.907403237 0.844524926 1.222627705 0.936907284 0.886520885 0.935986631 0.887752023 1.012524214 1.066015499 1 11.090688 -8.50035277 19.71667244 1.035095235 0.949714591 0.122860906 0.098848222 110.4845851 96712.7965 0.056972888 0.026806395 3.16E-09 8.50035277 -0.085380644 KIPEPS(ph)PVTRR ddPTM_K562_Paclitaxel_30min_R1 1 KIPEPSPVTRR 11 2 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;H0YHT2;Q7Z4S6-3;H0YI78 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 1 KIPEPS(0.802)PVT(0.198)RR 116.58 0.023839 48542000 2462.3 1650.5 3706.6 2608.8 1715.8 1782 1617.9 2868.8 2258.4 3180.8 TRUE FALSE 2496.779797 1830.707172 2770.822987 2441.483245 1949.521009 2098.012679 1924.888079 2625.077534 2475.329411 2532.551214 0.985875343 0.722870741 1.094083694 0.964041016 0.769785423 0.828418659 0.760058896 1.036534827 0.97740547 1 11.30637573 -8.288183107 24.86869743 1.005227631 0.875176941 0.227824402 0.109359834 1151.416376 1070682.25 0.061162935 0.02939542 5.15E-09 8.288183107 -0.13005069 KIPNPDFFEDLEPFR ddPTM_K562_Paclitaxel_30min_R1 1 KIPNPDFFEDLEPFR 15 1 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 0 147.39 9.73E-22 0 1353.4 1492.4 2292.1 1806.2 1569.2 1106.8 1527.9 2218.6 2230.6 2640.7 FALSE TRUE 1372.351776 1655.345279 1713.431007 1690.358416 1782.951607 1303.07544 1817.811049 2030.116082 2444.859097 2102.52389 0.652716377 0.787313422 0.814940089 0.80396633 0.848005397 0.619767245 0.864585205 0.965561481 1.162821078 1 11.03790648 -8.290146884 2.474984809 1.074359427 0.765210648 0.721333836 0.080595149 0.15677298 1.84692683 0.052986954 0.022353977 5.13E-09 8.290146884 -0.309148779 KISSEAWPPVGT(ph)PPSSESEPVR ddPTM_K562_Paclitaxel_30min_R1 1 KISSEAWPPVGTPPSSESEPVR 22 1 E7EVW7;P14317 E7EVW7 HCLS1 Hematopoietic lineage cell-specific protein 1 KISSEAWPPVGT(0.989)PPS(0.005)S(0.005)ES(0.001)EPVR 88.829 0.00061321 12276000 2324 1910.7 2825.6 2347.7 1772.4 1617.4 1649.1 2362.1 2006.8 2989 TRUE FALSE 2356.54317 2119.316688 2112.242333 2197.12903 2013.830887 1904.223181 1962.008116 2161.424861 2199.562107 2379.840159 0.990210692 0.890529004 0.887556387 0.923225462 0.846204263 0.800147511 0.824428527 0.908222703 0.924247832 1 11.21664896 -9.039889021 1.979158061 0.998799367 0.878658551 0.334420898 0.050390531 0.453773658 4.037188003 0.052057677 0.014585012 9.12E-10 9.039889021 -0.120140816 KIVEPEVVGES(ph)DS(ph)EVEGDAWR ddPTM_K562_Paclitaxel_30min_R1 2 KIVEPEVVGESDSEVEGDAWR 21 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 KIVEPEVVGES(1)DS(1)EVEGDAWR;KIVEPEVVGES(1)DS(1)EVEGDAWR 110.89 0.00021526 54912000 4541.1 3209.4 5839 4474.4 2961 3117.4 3131.1 4682.2 4126.9 5435 TRUE FALSE 4604.68941 3559.813145 4364.872234 4187.432011 3364.33833 3670.22712 3725.20988 4284.417885 4523.307184 4327.344017 1.064091367 0.822632343 1.008672344 0.967667926 0.777460335 0.848147757 0.860853647 0.990080259 1.04528486 1 12.0792661 -8.425349743 4.981654052 1.021467622 0.903168162 0.253200843 0.083313622 0.305177115 11.88639923 0.049481421 0.022436408 3.76E-09 8.425349743 -0.118299459 KIVEPEVVGES(ph)DSEVEGDAWR ddPTM_K562_Paclitaxel_30min_R1 3 KIVEPEVVGESDSEVEGDAWR 21 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 1 KIVEPEVVGES(0.988)DS(0.012)EVEGDAWR;KIVEPEVVGES(0.838)DS(0.162)EVEGDAWR;KIVEPEVVGES(0.954)DS(0.046)EVEGDAWR 126.5 1.06E-07 268263000 10219.4 9993 18883.6 14198.4 10787.7 8934.7 7842.7 11620.3 9121.1 12274.8 TRUE FALSE 10362.50313 11084.06953 14116.20163 13287.77817 12257.16738 10519.1436 9330.811383 10633.08298 9997.222409 9773.189022 1.06029906 1.134130273 1.444380294 1.359615387 1.25416252 1.076326629 0.95473559 1.087984992 1.022923263 1 13.25461368 -7.325907682 3.822211734 1.02344736 1.261935248 0.532568843 0.104737288 0.206923958 6.035045384 0.042129436 0.037470705 4.72E-08 7.325907682 0.238487889 KKEPAITSQNS(ph)PEAREESTSSGNVSNR ddPTM_K562_Paclitaxel_30min_R1 3 KKEPAITSQNSPEAREESTSSGNVSNR 27 3 A0A1W2PRL9;A0A1W2PPZ5;P23193-2;P23193 A0A1W2PRL9 TCEA1 Transcription elongation factor A protein 1 1 KKEPAIT(0.044)S(0.127)QNS(0.748)PEAREES(0.027)T(0.027)S(0.013)S(0.012)GNVSNR;KKEPAIT(0.013)S(0.013)QNS(0.944)PEAREES(0.012)T(0.012)S(0.006)S(0.001)GNVSNR;KKEPAIT(0.012)S(0.03)QNS(0.927)PEAREES(0.01)T(0.01)S(0.005)S(0.003)GNVS(0.001)NR 47.546 0.010057 66067000 4199.1 2938.13 8513.9 4531.2 3188.75 2568.72 2552.3 4706.5 3092.78 5540.8 TRUE FALSE 4257.900355 3258.92497 6364.460646 4240.589113 3623.111736 3024.246425 3036.585601 4306.653448 3389.855338 4411.581919 0.965164069 0.738720266 1.442670852 0.961240025 0.821272687 0.685524259 0.688321255 0.976215228 0.768399046 1 12.10708036 -6.671389582 4.515728951 0.808384694 1.043805327 0.222848567 0.188746282 0.315889118 11.47448545 0.057860897 0.074827493 2.13E-07 6.671389582 0.235420633 KKIPDPDS(ph)DDVSEVDAR ddPTM_K562_Paclitaxel_30min_R1 1 KKIPDPDSDDVSEVDAR 17 2 P51532;A0A2R8Y4C5;Q9HBD4;A0A2R8Y4P4;A0A2R8Y7S2;A0A2R8YGG3;A0A2R8YG32;A0A2R8Y440;A0A2R8Y7F3;A0A2R8YF80;A0A2R8Y6N0;A0A2R8Y526;A0A2R8Y7Y7;A0A2R8YF58;A0A2R8Y6V2;A0A2R8YDA1;A0A0A0MT49;P51532-5;P51532-2;P51532-3;P51532-4;A0A2R8Y7R0;A0A2R8YGP5;A0A2R8Y583 P51532 SMARCA4 Transcription activator BRG1 1 KKIPDPDS(0.993)DDVS(0.007)EVDAR 113.71 0.0035537 19468000 2815.2 2498.2 6089.7 3234.3 2116.6 2015.3 1822.6 2866.8 2836.5 3657.8 TRUE FALSE 2854.621486 2770.961924 4552.279919 3026.866474 2404.916754 2372.685159 2168.428835 2623.247446 3108.958499 2912.338352 0.98018195 0.951456043 1.563101319 1.039325143 0.825768322 0.814701066 0.744566246 0.90073581 1.06751281 1 11.50796226 -6.530004519 12.23767236 0.881071728 1.169815937 0.324583082 0.177116938 0.43088256 724.3037157 0.053894002 0.070801244 2.95E-07 6.530004519 0.288744209 KKTEFLDLDNSPLSPPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 KKTEFLDLDNSPLSPPSPR 19 2 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 KKTEFLDLDNSPLSPPS(1)PR;KKTEFLDLDNSPLS(0.001)PPS(0.999)PR 64.318 0.013924 136229000 6580.4 5299.8 14244 7031.7 5418.8 4771.9 5137.7 7066.3 6604.7 9911 TRUE FALSE 6672.545902 5878.450087 10647.92603 6580.718235 6156.932301 5618.129464 6112.551754 6465.973709 7239.110946 7891.13276 0.845575167 0.744943757 1.3493533 0.83393835 0.780234282 0.711954752 0.774610178 0.819397405 0.91737285 1 12.9460167 KLCQPQSTGSLLGDPAAS(ph)SPPGER ddPTM_K562_Paclitaxel_30min_R1 1 KLCQPQSTGSLLGDPAASSPPGER 24 1 U3KQ90;P55199 U3KQ90 ELL RNA polymerase II elongation factor ELL 1 KLCQPQSTGSLLGDPAAS(0.752)S(0.248)PPGER 131.98 6.41E-14 121230000 2257.3 1841.3 3526.6 2607.2 2109.4 1975.4 1637.2 2252.2 2156.2 3294.4 TRUE FALSE 2288.909164 2042.339361 2636.266214 2439.985861 2396.735992 2325.709454 1947.850153 2060.861552 2363.312644 2622.999472 0.872630433 0.778627439 1.005057852 0.930227355 0.913738649 0.886660283 0.742604097 0.785688893 0.900996233 1 11.3570018 -7.545130762 24.99654444 0.835915773 0.900757869 0.031150268 0.08367278 540.3230125 606960.1659 0.032054915 0.024831462 2.85E-08 7.545130762 0.064842096 KLDELYGTWR ddPTM_K562_Paclitaxel_30min_R1 2 KLDELYGTWR 10 1 H3BM89;P36578 H3BM89 RPL4 60S ribosomal protein L4 0 ; 106.16 0.0094751 42431000 5093.9 4545.3 7539 5421.3 3940.3 3339.5 3533.4 5377.7 3814.3 6484.3 FALSE TRUE 5165.230316 5041.571225 5635.686209 5073.602083 4477.03557 3931.713436 4203.844204 4920.830818 4180.680558 5162.796101 1.000471492 0.976519531 1.091595736 0.982723699 0.867172649 0.761547301 0.81425726 0.9531329 0.809770612 1 12.33393691 -6.707953075 4.023911463 0.856471957 1.020362122 0.502035023 0.071076476 0.171434436 5.681187436 0.021655339 0.027620063 1.96E-07 6.707953075 0.163890164 KLDVEEPDS(ph)ANSSFYSTR ddPTM_K562_Paclitaxel_30min_R1 2 KLDVEEPDSANSSFYSTR 18 1 A0A087WY61;Q14980-5;Q14980-2;Q14980;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 KLDVEEPDS(0.993)ANS(0.005)S(0.002)FYSTR;KLDVEEPDS(1)ANSSFYSTR 188.26 7.11E-13 36377000 1737.19 1532.88 2795.4 2187.91 1359.95 1411.32 1224.54 1943.94 1730.18 2051.54 TRUE FALSE 1761.51602 1700.245022 2089.666697 2047.587245 1545.198214 1661.597786 1456.890072 1778.790163 1896.37152 1633.435022 1.078412056 1.040901535 1.279308126 1.2535468 0.945980828 1.017241435 0.891917984 1.088987404 1.160971507 1 10.67369335 -6.766494808 24.99998895 1.015672216 1.162622517 0.35904157 0.095235124 153.9464564 761291.1749 0.031696205 0.037048047 1.71E-07 6.766494808 0.146950301 KLEKEEEEGISQES(ph)SEEEQ ddPTM_K562_Paclitaxel_30min_R1 1 KLEKEEEEGISQESSEEEQ 19 2 P17096;P17096-2 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 KLEKEEEEGIS(0.001)QES(0.5)S(0.5)EEEQ 97.081 0.0062472 144610000 5702.9 4016.8 11741 5267.3 3978.9 3570.6 2930.3 5801.9 4566.6 7889.1 TRUE FALSE 5782.758195 4455.367808 8776.839339 4929.478954 4520.893543 4203.795776 3486.309128 5308.992381 5005.242334 6281.29709 0.920631219 0.70930697 1.39729728 0.784786786 0.71973885 0.669256002 0.555030128 0.845206381 0.796848527 1 12.61684679 -6.494645793 24.82279396 0.742375276 0.997758132 0.244871547 0.192263692 877.0927358 771151.7915 0.053635807 0.079350379 3.20E-07 6.494645793 0.255382856 KLENS(ph)PLGEALR ddPTM_K562_Paclitaxel_30min_R1 1 KLENSPLGEALR 12 1 Q9NX40;D6RG39;Q9NX40-4;Q9NX40-2;Q9NX40-3;D6RIT9;D6RBN5;D6RDK6;D6RI08;D6RIV2;D6RDK1;D6R9T5 Q9NX40 OCIAD1 OCIA domain-containing protein 1 1 KLENS(1)PLGEALR 83.292 0.016439 118890000 4336.3 3624.3 6893 5112 4044.3 3378.6 3210.7 4378.2 4219.7 5278.7 TRUE FALSE 4397.021579 4020.013331 5152.776898 4784.1392 4595.202131 3977.747272 3819.913564 4006.244582 4625.021039 4202.898042 1.046188019 0.956486046 1.226005686 1.138295327 1.093341329 0.946429638 0.908876096 0.953210033 1.100436173 1 12.03716874 -7.252471178 23.89696322 0.974308872 1.094540918 0.324390384 0.079163133 436.5376111 1163212.545 0.027995991 0.027572554 5.59E-08 7.252471178 0.120232046 KLESGGGGEGGEGT(ph)EEEDGAER ddPTM_K562_Paclitaxel_30min_R1 1 KLESGGGGEGGEGTEEEDGAER 22 1 Q96LA8 Q96LA8 PRMT6 Protein arginine N-methyltransferase 6 1 KLESGGGGEGGEGT(1)EEEDGAER 124.09 4.46E-12 0 444.39 393.62 709.77 533.74 277.24 355.67 385.3 607.58 301.95 713.43 TRUE FALSE 450.6128311 436.5967627 530.5797852 499.5083053 315.0047817 418.7430806 458.4086636 555.9622866 330.9536466 568.0325744 0.793286955 0.768612193 0.934065772 0.8793656 0.55455408 0.737181457 0.807011225 0.978750712 0.582631457 1 9.149829855 -10.39600176 10.26715468 0.999999963 0.787232923 0.204243597 0.128844207 0 0 0.125581314 0.030457942 4.02E-11 10.39600176 -0.21276704 KLFIGGLS(ph)FETTDESLR ddPTM_K562_Paclitaxel_30min_R1 1 KLFIGGLSFETTDESLR 17 1 F8W6I7;P09651-3;P09651-2;P09651;F8VTQ5;F8W646;F8VZ49;Q32P51 F8W6I7 HNRNPA1;HNRNPA1L2 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed;Heterogeneous nuclear ribonucleoprotein A1-like 2" 1 KLFIGGLS(0.951)FET(0.024)T(0.024)DES(0.002)LR 69.088 0.02057 2689700 501.26 630.86 796.4 843.57 593.44 547.17 579.81 780.94 655.13 865.48 TRUE FALSE 508.2791865 699.7394282 595.3389702 789.4671959 674.276575 644.2029169 689.8259207 714.5942725 718.0581637 689.0947009 0.737604259 1.015447408 0.86394362 1.145658492 0.978496242 0.93485397 1.001061131 1.037004452 1.042031179 1 9.428558453 -4.690610556 1.460036062 1.006668306 1.21E-14 0.552084902 0.070420086 4.18365171 2.520800345 0.019307469 9.251687869 2.04E-05 4.690610556 -1.006668306 KLGPGRPLPTFPTSECTS(ph)DVEPDTR ddPTM_K562_Paclitaxel_30min_R1 2 KLGPGRPLPTFPTSECTSDVEPDTR 25 2 Q8TDD1-2;Q8TDD1;H0YHZ9 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 KLGPGRPLPTFPTSECT(0.265)S(0.732)DVEPDT(0.003)R;KLGPGRPLPTFPT(0.011)S(0.01)ECT(0.328)S(0.641)DVEPDT(0.01)R 92.901 4.42E-05 387130000 3421.5 3134.4 5409.9 4241.9 3118.7 2636.4 3074.7 3263.9 4301.9 4690 TRUE FALSE 3469.411556 3476.624392 4044.103836 3969.84352 3543.51974 3103.928523 3658.108274 2986.611322 4715.116716 3734.175426 0.929097099 0.931028673 1.082997818 1.063111147 0.948943029 0.831221935 0.979629465 0.799804771 1.262692878 1 11.86657399 -8.765310712 24.99999973 1.131346365 0.951147799 0.346733018 0.101694694 120.0384462 775121.7432 0.086712988 0.025692199 1.72E-09 8.765310712 -0.180198565 KLIFT(ph)S(ph)VYFGHDS(ph)ELFK ddPTM_K562_Paclitaxel_30min_R1 1 KLIFTSVYFGHDSELFK 17 1 Q7RTR0-2;Q7RTR0 Q7RTR0-2 NLRP9 "NACHT, LRR and PYD domains-containing protein 9" 3 KLIFT(1)S(1)VY(0.001)FGHDS(1)ELFK 58.914 0.021699 68329000 2443.6 2348.5 3332.3 2634.2 2100.3 2319.8 1928.6 2789.5 2918.4 3083.3 TRUE FALSE 2477.817939 2604.917172 2491.019652 2465.254202 2386.396418 2731.183958 2294.541782 2552.514563 3198.72536 2454.921768 1.00932664 1.061099872 1.014704291 1.004208865 0.972086545 1.11253401 0.934670022 1.039753933 1.302984642 1 11.26146133 -8.55126742 24.9635532 1.158118188 1.016605268 0.302796187 0.08128672 222.7730386 195891.0858 0.049814095 0.018828777 2.81E-09 8.55126742 -0.14151292 KLLAS(ph)QS(ph)SGLR ddPTM_K562_Paclitaxel_30min_R1 2 KLLASQSSGLR 11 1 F6XZD3;Q8N283 F6XZD3 ANKRD35 Ankyrin repeat domain-containing protein 35 2 KLLAS(1)QS(0.5)S(0.5)GLR;KLLAS(1)QS(0.801)S(0.199)GLR 59.426 0.025983 50123000 3039.5 2743.1 2038.4 2814.7 2575.3 3698.5 2909.9 2876.2 1860.25 3723.7 TRUE FALSE 3082.062378 3042.600935 1523.780709 2634.17774 2926.09946 4354.377045 3462.038334 2631.848857 2038.935324 2964.807896 1.039548762 1.026238813 0.513955967 0.888481761 0.986944032 1.468687753 1.167710845 0.887696252 0.687712458 1 11.53372291 -8.511275054 24.36835622 0.825138919 1.007657838 0.084581749 0.233958073 1081.406907 2271045.35 0.154752555 0.067436252 3.08E-09 8.511275054 0.182518919 KLLLDPS(ph)SPPTK ddPTM_K562_Paclitaxel_30min_R1 1 KLLLDPSSPPTK 12 1 F5GX19;F5H3Y3;Q6IAA8;H0YFI1;F5H479 F5GX19 LAMTOR1 Ragulator complex protein LAMTOR1 1 KLLLDPS(0.494)S(0.31)PPT(0.195)K 75.316 0.026146 24905000 7310.2 5759.9 12219 7417.6 5154.4 4659.8 5018.3 6805.4 6963.5 8904.3 TRUE FALSE 7412.565354 6388.785361 9134.162327 6941.868336 5856.516545 5486.150103 5970.496228 6227.238792 7632.375289 7089.598772 1.045554987 0.901149073 1.288389177 0.97916237 0.826071648 0.77383083 0.842148677 0.878362654 1.076559553 1 12.79148827 -6.522795131 24.31967177 0.88593161 1.072831679 0.304631711 0.120066071 2.436705852 708856.2298 0.035828918 0.046792729 3.00E-07 6.522795131 0.186900069 KLNLAPAATTSNEPSGNNPPTHLSLDPT(ph)NAENTASQSPR ddPTM_K562_Paclitaxel_30min_R1 1 KLNLAPAATTSNEPSGNNPPTHLSLDPTNAENTASQSPR 39 1 Q9UER7-3;Q9UER7;Q9UER7-2;Q9UER7-5;Q9UER7-4 Q9UER7-3 DAXX Death domain-associated protein 6 1 KLNLAPAATTSNEPSGNNPPT(0.001)HLS(0.008)LDPT(0.334)NAENT(0.334)AS(0.109)QS(0.213)PR 68.271 1.68E-06 20819000 1326.8 1386.3 2021.3 1315.1 1045.1 1216.6 1345.6 1404.1 1350.8 1531.3 TRUE FALSE 1345.379294 1537.660922 1510.997816 1230.755372 1187.460314 1432.346928 1600.920575 1284.812941 1480.550376 1219.220219 1.103475215 1.261183909 1.239314926 1.00946109 0.973950641 1.174805753 1.313069247 1.053798912 1.214342046 1 10.25174302 -6.225485582 24.98964646 1.11391277 1.207310617 0.139227844 0.107356908 1307.213036 908575.4669 0.030508644 0.052840224 5.95E-07 6.225485582 0.093397847 KLNSSSSSSSNSSNEREDFDSTSS(ph)SSSTPPLQPR ddPTM_K562_Paclitaxel_30min_R1 1 KLNSSSSSSSNSSNEREDFDSTSSSSSTPPLQPR 34 2 A0A669KAU9;A0A669KAX4;Q13620-1;K4DI93;Q13620 A0A669KAU9 CUL4B Cullin-4B 1 KLNSSSSSSSNSS(0.002)NEREDFDS(0.042)T(0.017)S(0.053)S(0.177)S(0.177)S(0.177)S(0.177)T(0.177)PPLQPR 54.096 0.0011026 18604000 2716.6 2125.1 3815 2822.6 2388.5 2022.7 2168.5 2906.8 2420.1 3104.6 TRUE FALSE 2754.640781 2357.125605 2851.856067 2641.571069 2713.854138 2381.397445 2579.961555 2659.849196 2652.561418 2471.880816 1.114390615 0.953575751 1.153719082 1.068648234 1.097890368 0.96339493 1.04372409 1.076042655 1.073094383 1 11.27139347 KLPPPPGS(ph)PLGHSPTASPPPTAR ddPTM_K562_Paclitaxel_30min_R1 2 KLPPPPGSPLGHSPTASPPPTAR 23 1 M0QXA7;O95785-4;B9EGQ5;A0A669KBG4;A0A669KBH9;A0A2R8YFV2;A0A669KAV7;O95785-3;O95785;O95785-2 M0QXA7 WIZ Protein Wiz 1 KLPPPPGS(0.966)PLGHS(0.032)PT(0.001)ASPPPTAR;KLPPPPGS(0.584)PLGHS(0.213)PT(0.177)AS(0.025)PPPT(0.001)AR 63.932 0.00346 42796000 2701 2302.1 3151.2 2714.7 2558.4 2454.9 1654.08 2487.6 2441.9 3017.6 TRUE FALSE 2738.822333 2553.451063 2355.640586 2540.591293 2906.897394 2890.242046 1967.933045 2276.262853 2676.455406 2402.611464 1.139935597 1.06278152 0.980450074 1.057429106 1.209890754 1.202958568 0.819080852 0.947411967 1.113977622 1 11.23038765 -7.749088011 24.99999777 0.96573524 1.103222177 0.347043611 0.092990355 282.8908598 572590.6285 0.038433382 0.029553485 1.78E-08 7.749088011 0.137486937 KLS(ph)GDQITLPTTVDYSSVPK ddPTM_K562_Paclitaxel_30min_R1 2 KLSGDQITLPTTVDYSSVPK 20 1 E9PJ38;E9PND3;E9PN10;O00559;O00559-2 E9PJ38 EBAG9 Receptor-binding cancer antigen expressed on SiSo cells 1 KLS(1)GDQITLPTTVDYSSVPK;KLS(1)GDQITLPTTVDYSSVPK 121.44 6.28E-06 439010000 13068.2 9741.3 29389 14722.5 11051.8 8849.6 8198.8 15103.8 13091.2 19571.6 TRUE FALSE 13251.19512 10804.88808 21969.38347 13778.26475 12557.24227 10418.95231 9754.479499 13820.63792 14348.66825 15582.89718 0.850367872 0.693381209 1.409839468 0.884191469 0.805834892 0.668614583 0.625973424 0.886910679 0.920795927 1 13.92767586 KLS(ph)GDQPAAR ddPTM_K562_Paclitaxel_30min_R1 2 KLSGDQPAAR 10 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 KLS(1)GDQPAAR;KLS(1)GDQPAAR 110.15 0.010332 532580000 8674.3 6904.4 14393.2 9443.2 7190.4 6476 5962.5 8820.9 7023.7 9782 TRUE FALSE 8795.766963 7658.245741 10759.45865 8837.555418 8169.854214 7624.427672 7093.853249 8071.509487 7698.357768 7788.423031 1.129338626 0.983285796 1.381468187 1.134704084 1.048974123 0.978943702 0.910820229 1.036347083 0.988436008 1 12.92711553 -6.8931176 2.939899856 0.982494708 1.161762152 0.429589422 0.094885039 0.262092813 4.562851159 0.032323776 0.037442093 1.28E-07 6.8931176 0.179267444 KLS(ph)NPDIFSSTGK ddPTM_K562_Paclitaxel_30min_R1 1 KLSNPDIFSSTGK 13 1 Q6P0Q8-2;Q6P0Q8 Q6P0Q8-2 MAST2 Microtubule-associated serine/threonine-protein kinase 2 1 KLS(1)NPDIFSSTGK 107.82 0.00010337 0 3003.9 2591.2 5690.8 3661.3 2747.4 2302 1631.7 3315.1 3140 3938.9 TRUE FALSE 3045.963868 2874.115979 4254.087157 3426.480605 3121.642394 2710.227378 1941.306557 3033.461563 3441.61103 3136.150018 0.971243037 0.916447224 1.356468005 1.092575478 0.995374066 0.864189329 0.619009469 0.967256523 1.0974 1 11.61477886 -7.002754834 3.491121426 0.89087526 1.090032136 0.20760072 0.158286165 0.36829503 9.568733506 0.056606117 0.061192202 9.94E-08 7.002754834 0.199156876 KLS(ph)PIIEDSR ddPTM_K562_Paclitaxel_30min_R1 2 KLSPIIEDSR 10 1 O60566;O60566-3 O60566 BUB1B Mitotic checkpoint serine/threonine-protein kinase BUB1 beta 1 KLS(0.995)PIIEDS(0.005)R;KLS(1)PIIEDSR 124.51 0.0036821 102456000 4333.5 3507.1 6853.3 4843.8 3845.4 3443.4 3126.3 4446.3 3402 5663.5 TRUE FALSE 4394.18237 3890.017038 5123.099654 4533.140348 4369.208583 4054.038642 3719.499105 4068.559062 3728.777301 4509.275591 0.974476339 0.862670059 1.136124761 1.00529237 0.968938024 0.899044328 0.82485513 0.90226445 0.82691271 1 12.13867997 -7.234853543 3.138118131 0.878459525 0.994271914 0.293182003 0.076815899 0.315078628 6.344904286 0.027877427 0.026444183 5.82E-08 7.234853543 0.115812389 KLS(ph)PTEPK ddPTM_K562_Paclitaxel_30min_R1 2 KLSPTEPK 8 1 O14828-2;O14828 O14828-2 SCAMP3 Secretory carrier-associated membrane protein 3 1 KLS(0.833)PT(0.167)EPK;KLS(0.982)PT(0.018)EPK 101.3 0.027045 52739000 5867.3 4059.9 13339.2 6680.1 4685.1 4157.8 3597.7 6591.5 5267.8 8926.9 TRUE FALSE 5949.460302 4503.173612 9971.553983 6251.668285 5323.289939 4895.127452 4280.344794 6031.510932 5773.795727 7107.59288 0.83705699 0.63357225 1.402943887 0.879576024 0.748958196 0.688718042 0.602221436 0.848601071 0.812341931 1 12.79514533 -6.532338389 14.87644638 0.766832124 0.96138863 0.127209273 0.203601458 3.010381613 4728.018655 0.061150442 0.07962618 2.94E-07 6.532338389 0.194556506 KLS(ph)SQLEEERS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 KLSSQLEEERSR 12 2 B1AMN7;Q9P2B4 B1AMN7 CTTNBP2NL CTTNBP2 N-terminal-like protein 2 KLS(0.738)S(0.262)QLEEERS(1)R 80.507 0.029319 0 1220.9 1470 1545 1473.1 1583.9 1548.2 1532.8 1512.4 588.64 1858 TRUE FALSE 1237.996367 1630.499571 1154.945642 1378.621959 1799.653996 1822.751532 1823.640798 1383.91218 645.1815021 1479.33858 0.836858028 1.10218147 0.780717584 0.931917803 1.216526101 1.232139523 1.232740647 0.935493874 0.436128355 1 10.53073657 -8.534926884 24.50755629 0.707312888 1.051105743 0.304506067 0.197018145 215.77146 438896.1984 0.134740319 0.051014663 2.92E-09 8.534926884 0.343792855 KLS(ph)SSDAPAQDTGSSAAAVETDASR ddPTM_K562_Paclitaxel_30min_R1 1 KLSSSDAPAQDTGSSAAAVETDASR 25 1 A0A1B0GV47;Q7Z4S6-6;Q7Z4S6-5;Q7Z4S6-2;Q7Z4S6;Q7Z4S6-4;H0YHT2;Q7Z4S6-3;H0YIM6 A0A1B0GV47 KIF21A Kinesin-like protein KIF21A 1 KLS(0.333)S(0.333)S(0.333)DAPAQDTGSSAAAVETDASR 88.856 8.70E-05 57154000 1463 1294.8 1747.6 1287.4 932.48 788.13 744.35 1273.5 1356.5 1105.1 TRUE FALSE 1483.486514 1436.170643 1306.396766 1204.831926 1059.499563 927.8937896 885.5865267 1165.308226 1486.797886 879.8800134 1.686010014 1.632234647 1.484744222 1.369313893 1.204140959 1.05456855 1.006485559 1.324394472 1.68977345 1 9.781162991 -6.172233494 1.517922919 1.213228359 1.674260019 0.468594171 0.189535543 0.405324828 1.78625945 0.06485408 0.164849555 6.73E-07 6.172233494 0.46103166 KLS(ph)VPTS(ph)DEEDEVPAPKPR ddPTM_K562_Paclitaxel_30min_R1 1 KLSVPTSDEEDEVPAPKPR 19 2 Q5STZ8;Q8NE71;Q8NE71-2;F5GYK6 Q5STZ8 ABCF1 ATP-binding cassette sub-family F member 1 2 KLS(0.999)VPT(0.219)S(0.782)DEEDEVPAPKPR 103.84 0.0015104 10424000 2137.3 1828.2 6651.4 3368.1 2211.3 2257.9 1679.2 3367.5 1581.4 3920.1 TRUE FALSE 2167.228794 2027.809059 4972.171807 3152.085141 2512.516498 2658.306863 1997.819434 3081.409856 1733.300536 3121.181468 0.694361676 0.649692778 1.593041564 1.009901274 0.804988919 0.851698913 0.640084357 0.987257514 0.555334752 1 11.60787652 -6.765121374 10.65014603 0.799786368 1.006047475 0.094247224 0.270541308 0.294837553 599.235119 0.085084163 0.101734155 1.72E-07 6.765121374 0.206261108 KLSSWDQAET(ph)PGHT(ph)PSLR ddPTM_K562_Paclitaxel_30min_R1 2 KLSSWDQAETPGHTPSLR 18 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 2 KLSSWDQAET(1)PGHT(0.5)PS(0.5)LR;KLSSWDQAET(0.999)PGHT(0.753)PS(0.247)LR 92.913 0.0007911 64769000 6350.1 5076.7 7015.6 4859.4 4243 4450.4 5544.7 7676.9 6337.4 10018.2 TRUE FALSE 6439.020992 5630.991274 5244.425012 4547.739834 4820.968435 5239.615953 6596.77788 7024.699427 6946.135586 7976.485341 0.807250401 0.705948928 0.657485696 0.57014332 0.60439758 0.656882791 0.827028146 0.880676028 0.870826597 1 12.96153748 -7.917523518 2.61755275 0.905920323 0.659960974 0.736228051 0.068029418 0.161559521 2.233472314 0.036937851 0.02217447 1.21E-08 7.917523518 -0.245959349 KLSSWDQAETPGHT(ph)PSLR ddPTM_K562_Paclitaxel_30min_R1 5 KLSSWDQAETPGHTPSLR 18 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 KLSSWDQAETPGHT(0.5)PS(0.5)LR;KLSSWDQAETPGHT(0.861)PS(0.139)LR;KLSSWDQAETPGHT(0.974)PS(0.026)LR;KLSSWDQAET(0.001)PGHT(0.655)PS(0.344)LR;KLSSWDQAETPGHT(0.924)PS(0.075)LR 145.73 1.03E-14 82946600 9904.5 9497.8 13280.5 10981.7 8351 8633.2 8366.9 12741.6 9603 15858.7 TRUE FALSE 10043.19356 10534.80192 9927.673524 10277.38291 9488.547584 10164.1768 9954.475597 11659.12155 10525.41106 12626.68823 0.795394118 0.834328189 0.78624524 0.81394129 0.751467638 0.804975669 0.788367893 0.923371302 0.833584457 1 13.62418867 -9.124966233 0.723414953 0.997917559 0.794802692 0.723869441 0.036950771 0.429439981 0.498414749 0.035801629 0.013641381 7.50E-10 9.124966233 -0.203114868 KLSVPTS(ph)DEEDEVPAPKPR ddPTM_K562_Paclitaxel_30min_R1 3 KLSVPTSDEEDEVPAPKPR 19 2 Q5STZ8;Q8NE71;Q8NE71-2;F5GYK6 Q5STZ8 ABCF1 ATP-binding cassette sub-family F member 1 1 KLS(0.003)VPT(0.303)S(0.694)DEEDEVPAPKPR;KLS(0.001)VPT(0.003)S(0.996)DEEDEVPAPKPR;KLSVPT(0.163)S(0.837)DEEDEVPAPKPR 155.54 5.93E-11 366046000 7216.3 5318.8 14476.3 7934.8 6426 5246.5 4854.5 7729.6 6281.2 10049.1 TRUE FALSE 7317.350464 5899.524571 10821.57902 7425.897443 7301.329993 6176.89311 5775.616033 7072.922233 6884.537325 8001.087904 0.914544441 0.737340302 1.352513452 0.928110968 0.912542154 0.772006655 0.721853841 0.883995066 0.860450155 1 12.96598046 -6.868274802 3.003413961 0.834082137 0.993560419 0.135251653 0.158803702 0.482444853 8.739630328 0.053226461 0.062428662 1.35E-07 6.868274802 0.159478282 KLTAT(ph)PTPLGGMTGFHMQTEDR ddPTM_K562_Paclitaxel_30min_R1 1 KLTATPTPLGGMTGFHMQTEDR 22 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 KLT(0.138)AT(0.849)PT(0.014)PLGGMTGFHMQTEDR 72.316 0.0041455 29678000 1320 1497.5 2930.8 1566.4 1314.7 1209.9 1009.5 1709.2 1615.5 1773.4 TRUE FALSE 1338.484073 1661.002114 2190.883292 1465.938115 1493.784398 1424.458777 1201.047355 1563.992792 1770.675993 1411.980107 0.947948251 1.17636368 1.551638923 1.038214425 1.057935867 1.00883771 0.850612094 1.107659226 1.254037493 1 10.46350405 KLTS(ph)DEEGEPSGK ddPTM_K562_Paclitaxel_30min_R1 2 KLTSDEEGEPSGK 13 1 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 KLT(0.263)S(0.737)DEEGEPSGK;KLT(0.05)S(0.95)DEEGEPSGK 192.46 0.00012889 14337000 6568.3 5266.4 15315.4 7978.9 6001.8 4593 4569 7032.9 6761.5 9486.3 TRUE FALSE 6660.276465 5841.403362 11448.83785 7467.169066 6819.346771 5407.504061 5435.943898 6435.411247 7410.972286 7552.986853 0.881806972 0.773389849 1.515802698 0.988637901 0.902867555 0.71594247 0.719707846 0.852035277 0.981197562 1 12.88283156 -6.776902745 3.704223384 0.835833598 1.058767182 0.158775623 0.200469666 0.384623097 11.31684365 0.065808359 0.080284777 1.67E-07 6.776902745 0.222933584 KMEES(ph)DEEAVQAK ddPTM_K562_Paclitaxel_30min_R1 1 KMEESDEEAVQAK 13 1 Q9Y2K7-5;I3VM54;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7;Q9Y2K7-3 Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 KMEES(1)DEEAVQAK 93.181 0.0082453 10827000 1115.9 1069.3 2799.7 1398.5 940.26 992.81 586.4 1223.5 1225.3 1779.7 TRUE FALSE 1131.526043 1186.04979 2092.881109 1308.806469 1068.339331 1168.870914 697.6663388 1119.556038 1342.99554 1416.996163 0.798538537 0.837016938 1.476984316 0.923648563 0.753946523 0.824893492 0.492355842 0.790091087 0.947776412 1 10.46862014 -6.526442525 15.7945037 0.782360659 1.047933948 0.196446693 0.212667933 1.61569616 7146.648531 0.064391543 0.084468341 2.98E-07 6.526442525 0.265573288 KMEQFMESCELIT(ph)Y(ph)LGAKMTR ddPTM_K562_Paclitaxel_30min_R1 1 KMEQFMESCELITYLGAKMTR 21 2 H0Y8C5;H7C517;Q5TCS8 H0Y8C5 AK9 Adenylate kinase 9 2 KMEQFMES(0.204)CELIT(0.888)Y(0.879)LGAKMT(0.029)R 47.752 0.027244 42134000 1584.2 1581.9 2016 1798.5 1491.7 1384.7 1345.4 1639.4 1596.3 2073.1 TRUE FALSE 1606.383688 1754.617192 1507.035866 1683.15226 1694.894795 1630.257103 1600.682627 1500.122737 1749.631747 1650.601082 0.973211338 1.06301711 0.913022464 1.019720802 1.026834899 0.987674806 0.969757408 0.908834214 1.059996729 1 10.68877578 -7.519939606 23.88932237 0.977287955 0.999884495 0.010559262 0.050459095 261.0052072 2121515.107 0.018412423 0.014560808 3.02E-08 7.519939606 0.02259654 KMLGEDS(ph)DEEEEMDTSER ddPTM_K562_Paclitaxel_30min_R1 3 KMLGEDSDEEEEMDTSER 18 1 A0A087WWF4;A0A087X0M4;Q9BWU0;H7C256 A0A087WWF4 SLC4A1AP Kanadaptin 1 KMLGEDS(0.998)DEEEEMDT(0.001)S(0.001)ER;KMLGEDS(0.999)DEEEEMDT(0.001)SER;KMLGEDS(1)DEEEEMDTSER 93.551 0.0010975 126146000 3938.99 3203.21 6425.7 4190.85 3319.85 3156.14 2761.4 3735.3 4233.69 5356.5 TRUE FALSE 3994.148013 3552.9473 4803.452563 3922.067639 3772.069776 3715.837115 3285.361235 3417.96295 4640.354841 4264.84236 0.936528874 0.833078224 1.126290765 0.91962781 0.884457023 0.871271855 0.770335913 0.801427734 1.088048385 1 12.0582767 -6.517889045 24.10993135 0.886079206 0.963890846 0.049883691 0.108989963 345.2400647 1668187.021 0.032074929 0.042682857 3.03E-07 6.517889045 0.077811639 KMPLDLS(ph)PLATPIIR ddPTM_K562_Paclitaxel_30min_R1 1 KMPLDLSPLATPIIR 15 1 B8ZZU6;E9PBF9;P15336-5;P15336;P15336-4;E9PEK8;H7C2N6;P15336-3;P15336-7;C9JCI8 B8ZZU6 ATF2 Cyclic AMP-dependent transcription factor ATF-2 1 KMPLDLS(0.739)PLAT(0.261)PIIR 108.25 0.0014118 55647000 4844.7 4469.3 7313.5 5317.9 3698.6 3660.7 3918.7 5259 4441 5596 TRUE FALSE 4912.540747 4957.273288 5467.116473 4976.833696 4202.411938 4309.873746 4662.252868 4812.215124 4867.577893 4455.532128 1.102571052 1.112610827 1.227040074 1.117000967 0.943189683 0.967308421 1.04639642 1.080053961 1.092479586 1 12.12138203 -6.575615826 9.019552616 1.024400113 1.148585685 0.54767739 0.053137489 0.259055945 41.34396417 0.01720875 0.022247442 2.66E-07 6.575615826 0.124185571 KMPLDLSPLAT(ph)PIIR ddPTM_K562_Paclitaxel_30min_R1 1 KMPLDLSPLATPIIR 15 1 B8ZZU6;E9PBF9;P15336-5;P15336;P15336-4;E9PEK8;H7C2N6;P15336-3;P15336-7;C9JCI8 B8ZZU6 ATF2 Cyclic AMP-dependent transcription factor ATF-2 1 KMPLDLS(0.192)PLAT(0.808)PIIR 81.854 0.028126 71717000 4110.1 3472.6 6349.5 4986.9 3975 4082.9 3263.3 4470.8 4119.2 5555.1 TRUE FALSE 4167.654081 3851.750212 4746.490195 4667.062555 4516.462297 4806.944988 3882.494139 4090.977634 4514.867565 4422.967571 0.942275523 0.870852013 1.073146054 1.055188056 1.021138461 1.086814432 0.877802986 0.92493955 1.020777904 1 12.11079895 -5.749647471 24.99980017 1.005189497 0.906563755 0.291377463 0.06286727 309.139794 655389.31 0.017377864 0.045195549 1.78E-06 5.749647471 -0.098625742 KMS(ph)GGSTMSSGGGNTNNSNSK ddPTM_K562_Paclitaxel_30min_R1 3 KMSGGSTMSSGGGNTNNSNSK 21 1 A0A6E1WJ75;Q86U70-3;Q86U70-2;Q86U70 A0A6E1WJ75 LDB1 LIM domain-binding protein 1 1 KMS(0.808)GGS(0.163)T(0.029)MSSGGGNTNNSNSK;KMS(0.876)GGS(0.11)T(0.014)MSSGGGNTNNSNSK;KMS(0.961)GGS(0.019)T(0.019)MSSGGGNTNNSNSK 111.4 4.78E-05 175207100 5413.06 4015.83 10555.9 5780.5 3507.41 3043.44 3269.04 5640.6 4915.6 6932.1 TRUE FALSE 5488.859541 4454.2919 7890.932491 5409.764603 3985.178623 3583.151352 3889.323274 5161.395822 5387.765343 5519.334215 0.99447856 0.807034277 1.429689195 0.980148038 0.722039737 0.649199924 0.704672543 0.935148266 0.976162184 1 12.43027853 -6.555864868 8.22976727 0.815406354 1.075541326 0.273979038 0.180827252 0.297690621 64.92336456 0.055646 0.072344866 2.78E-07 6.555864868 0.260134972 KNGSTAVAESVAS(ph)PQK ddPTM_K562_Paclitaxel_30min_R1 2 KNGSTAVAESVASPQK 16 1 A6NNK5;Q12888;Q12888-3;Q12888-2;C9JXV0 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 KNGSTAVAESVAS(1)PQK;KNGSTAVAESVAS(1)PQK 168.05 4.75E-08 24071000 12787.2 9812.5 27209 14721.9 10869.5 8274.8 8061.7 14153.4 9895.4 18996.5 TRUE FALSE 12966.26025 10883.86193 20339.75143 13777.70323 12350.10992 9742.219596 9591.36549 12950.98033 10845.89738 15125.00287 0.857273242 0.719594041 1.344776699 0.910922354 0.816536038 0.64411357 0.634139747 0.856263 0.717083988 1 13.8846478 -6.783462121 3.638940148 0.752476852 0.972425966 0.197143603 0.17828027 0.342632309 9.622821854 0.057268099 0.069626726 1.65E-07 6.783462121 0.219949114 KNLGDNTINMPPLS(ph)TIDPS(ph)GTR ddPTM_K562_Paclitaxel_30min_R1 1 KNLGDNTINMPPLSTIDPSGTR 22 1 Q5T3J3 Q5T3J3 LRIF1 Ligand-dependent nuclear receptor-interacting factor 1 2 KNLGDNTINMPPLS(0.561)T(0.561)IDPS(0.439)GT(0.439)R 45.413 0.022691 87655000 1537.6 1673.3 1344.8 1839.6 1585.2 1614.6 1848.5 1850.9 1426 1651.1 TRUE FALSE 1559.131144 1855.996553 1005.288608 1721.61629 1801.131078 1900.92664 2199.243225 1693.654492 1562.973672 1314.604914 1.186007391 1.411828401 0.764707782 1.309607375 1.370093067 1.446006036 1.672930933 1.28833726 1.188930343 1 10.36041357 -6.501670965 24.71187465 1.36299403 1.131147858 0.141363983 0.220614642 1145.874347 1335203.745 0.062491223 0.091574508 3.15E-07 6.501670965 -0.231846172 KNQTALDALHAQTVSQTAAS(ph)SPQDAYR ddPTM_K562_Paclitaxel_30min_R1 1 KNQTALDALHAQTVSQTAASSPQDAYR 27 1 Q8TEK3-1;Q8TEK3 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 1 KNQTALDALHAQTVSQTAAS(0.5)S(0.5)PQDAYR 92.377 1.14E-06 7897700 2772.5 1679.3 3012.2 2713 1661.8 1746.7 1700.8 2481.3 1790.5 3066.8 TRUE FALSE 2811.323554 1862.651653 2251.732856 2539.000323 1888.165295 2056.45272 2023.517921 2270.498077 1962.485525 2441.784477 1.15133976 0.762823939 0.922166914 1.039813443 0.773272708 0.84219256 0.828704556 0.929851958 0.803709559 1 11.25372015 -5.245957873 24.63589765 0.876362785 1.151340007 0.458979959 0.08899294 2194.15852 3491523.425 0.021678007 0.511955771 5.68E-06 5.245957873 0.274977222 KNS(ph)ITEISDNEDDLLEYHRR ddPTM_K562_Paclitaxel_30min_R1 1 KNSITEISDNEDDLLEYHRR 20 2 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 KNS(0.965)IT(0.035)EISDNEDDLLEYHRR 81.651 0.0017007 22086000 640.65 643.77 1151.7 657.48 711.52 642.44 535.03 642.83 685.33 1066 TRUE FALSE 649.6210766 714.0589857 860.939091 615.3121756 808.4410701 756.3677137 636.5491495 588.2175791 751.1590086 848.7486149 0.765386906 0.841307984 1.014362882 0.724963982 0.952509443 0.891156345 0.749985494 0.693040989 0.885019422 1 9.729193505 -7.740311812 24.99932718 0.806431524 0.868282136 0 0.109772753 707.7447349 837442.9824 0.040783476 0.03155844 1.82E-08 7.740311812 0.061850612 KNTFTAWS(ph)DEESDYEIDDRDVNK ddPTM_K562_Paclitaxel_30min_R1 1 KNTFTAWSDEESDYEIDDRDVNK 23 2 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 KNT(0.054)FT(0.05)AWS(0.832)DEES(0.05)DY(0.014)EIDDRDVNK 54.008 0.029868 0 457.05 257.43 995.51 451.12 431.82 358.93 251.94 454 371.93 624.04 TRUE FALSE 463.4501101 285.537078 744.1811882 422.1871823 490.6411948 422.5811959 299.7442998 415.4298662 407.6555383 496.8603055 0.932757367 0.574682813 1.497767441 0.849710025 0.987483181 0.850503031 0.603276809 0.836109992 0.820463084 1 8.956696478 -7.390647645 4.57636406 0.79262256 0.968812134 0.088642202 0.230917346 0.542679326 17.80763507 0.083410713 0.072723355 4.07E-08 7.390647645 0.176189574 KPALPVS(ph)PAAR ddPTM_K562_Paclitaxel_30min_R1 1 KPALPVSPAAR 11 1 A0A087WWF4;A0A087X0M4;Q9BWU0 A0A087WWF4 SLC4A1AP Kanadaptin 1 KPALPVS(1)PAAR 78.508 0.023785 59467000 3257.5 2664.8 5476.3 3824.5 2943.7 2528.1 2643 3346.6 2034.5 3783.2 TRUE FALSE 3303.11505 2955.751876 4093.740335 3579.213688 3344.681777 2976.423039 3144.495453 3062.285441 2229.922815 3012.181763 1.096585568 0.981266108 1.359061523 1.188246251 1.11038511 0.98812863 1.043926197 1.016633683 0.740301546 1 11.55659311 -7.75588121 1.049305338 0.904989991 1.153690132 0.418506388 0.115270612 0.546968624 1.193085067 0.085496499 0.048769354 1.75E-08 7.75588121 0.248700141 KPAPPQHFS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 KPAPPQHFSPR 11 1 A0A075B784;Q9P275 A0A075B784 USP36 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 36 1 KPAPPQHFS(1)PR;KPAPPQHFS(1)PR 105.19 0.0027328 25691000 6002.9 4953.9 8394.1 6568.1 5384.7 4996.9 4522.5 6300.1 5304.1 7861.1 TRUE FALSE 6086.959121 5494.783555 6274.905638 6146.851464 6118.187304 5883.030055 5380.620766 5764.867181 5813.582504 6259.003505 0.972512496 0.877900699 1.002540681 0.982081486 0.977501818 0.939930781 0.859660929 0.921051918 0.928835157 1 12.61171727 -7.523828231 24.99944821 0.917806262 0.960878354 0.108517452 0.044442286 60.78601107 1600370.513 0.016795494 0.013123512 2.99E-08 7.523828231 0.043072092 KPATPAEDDEDDDIDLFGS(ph)DNEEEDKEAAQLREER ddPTM_K562_Paclitaxel_30min_R1 2 KPATPAEDDEDDDIDLFGSDNEEEDKEAAQLREER 35 3 E9PQ49;E9PI39;E9PK01;A0A087X1X7;E9PRY8;P29692;P29692-2;E9PQZ1;P29692-4;H0YE72;P29692-3;E9PL71 E9PQ49;P29692-3 EEF1D Elongation factor 1-delta 1 KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER;KPATPAEDDEDDDIDLFGS(1)DNEEEDKEAAQLREER 50.704 0.0023538 296980000 2876.04 2228.49 5455.56 2661.72 1817.5 1783.19 1591.41 2773.15 2167.1 3943.35 TRUE FALSE 2916.313433 2471.804074 4078.236404 2491.009193 2065.074271 2099.413709 1893.37174 2537.553598 2375.259638 3139.693105 0.928853023 0.787275696 1.298928356 0.793392573 0.65773125 0.668668446 0.60304357 0.808217081 0.756526055 1 11.61640783 -6.503367542 24.88365293 0.727891437 0.993730677 0.34551955 0.156623886 750.4669492 957109.7968 0.04329004 0.06314058 3.14E-07 6.503367542 0.265839239 KPATS(ph)Y(ph)VRT(ph)TINK ddPTM_K562_Paclitaxel_30min_R1 1 KPATSYVRTTINK 13 2 H0YKD8;P46779;P46779-2;P46779-3 H0YKD8 RPL28 60S ribosomal protein L28 3 KPAT(0.473)S(0.586)Y(0.933)VRT(0.564)T(0.444)INK 60.937 0.024805 0 373.19 476.19 395.88 423.14 473.35 517.18 426.88 495.8 587.31 510.18 TRUE FALSE 378.4158114 528.1820346 295.9351978 396.0016943 537.8282839 608.8946114 507.8782515 453.6786953 643.7237497 406.205036 0.931588183 1.300284309 0.728536507 0.974881302 1.324031551 1.498983414 1.250300234 1.116871174 1.584726167 1 8.666064315 -6.761312228 24.9999974 1.309544653 0.988192219 0.35817051 0.20407754 3.719440533 731170.4743 0.060445461 0.073138886 1.73E-07 6.761312228 -0.321352434 KPCGLGS(ph)YYGTIGGPVPFFS(ph)AQS(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 KPCGLGSYYGTIGGPVPFFSAQSK 24 1 D6RCA9;D6R9T4;A7E2U8 D6RCA9 C4orf47 UPF0602 protein C4orf47 3 KPCGLGS(0.263)Y(0.237)Y(0.237)GT(0.263)IGGPVPFFS(1)AQS(1)K 55.588 0.011957 75899000 527.83 592.24 891.06 673.25 710.59 578.33 688.97 694.55 711.25 832.01 TRUE FALSE 535.2212485 656.902766 666.1008825 630.0707584 807.3843884 680.8887053 819.6984608 635.5436423 779.5687404 662.4459053 0.807947101 0.991632314 1.005517397 0.951127863 1.218792934 1.027840462 1.237381731 0.959389495 1.176803622 1 9.37165884 -4.265460906 0.643454455 1.097257306 4.35E-09 0.432518601 0.096208308 9.47401427 1.140224639 0.039398922 10.22299322 5.43E-05 4.265460906 -1.097257301 KPEEMPTACPGHS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 KPEEMPTACPGHSPR 15 1 Q9NZC9;C9J8F8;C9J6I8 Q9NZC9 SMARCAL1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 1 KPEEMPTACPGHS(1)PR 89.831 0.0078625 23331000 2538.8 2387.6 3760.4 2375.9 1776.4 1620.6 1940.7 2628.5 2351.3 2787 TRUE FALSE 2574.351033 2648.286242 2811.040512 2223.520408 2018.375755 1907.990656 2308.937694 2405.192518 2577.152871 2219.00787 1.160136053 1.193455092 1.266800605 1.002033584 0.909584766 0.859839517 1.040527041 1.083904456 1.161398707 1 11.11569907 -6.272379882 24.49400165 1.00273832 1.205463033 0.547621672 0.082617022 441.856764 989244.3844 0.026222682 0.039334513 5.34E-07 6.272379882 0.202724713 KPIETGS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 KPIETGSPK 9 1 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 KPIET(0.018)GS(0.982)PK;KPIET(0.039)GS(0.961)PK 87.216 0.012929 425810000 6529.2 4851.3 13514.4 7067.3 5164.8 4005.5 4205.3 6905.2 3752.2 8772.9 TRUE FALSE 6620.628944 5380.98134 10102.52258 6614.03501 5868.333201 4715.819185 5003.233722 6318.560159 4112.615575 6984.978164 0.947838173 0.770364805 1.446321282 0.946894157 0.840136227 0.675137284 0.716284805 0.904592686 0.588780019 1 12.77003989 -6.737614336 3.477732204 0.769105942 1.047483832 0.28232465 0.191663359 0.294682892 7.461254416 0.059853095 0.075224152 1.83E-07 6.737614336 0.27837789 KPLFHGDSEIDQLFR ddPTM_K562_Paclitaxel_30min_R1 2 KPLFHGDSEIDQLFR 15 1 A0A087WZZ9;P06493;A0A024QZP7;P06493-2 A0A087WZZ9 CDK1;CDC2 Cyclin-dependent kinase 1 0 ; 135.91 5.18E-06 27524000 5517.1 4973.7 7655.5 6241.5 4939.2 4620.1 4533.7 7090 5464.6 8249.8 FALSE TRUE 5594.356422 5516.745386 5722.774343 5841.198126 5612.002661 5439.409866 5393.945907 6487.660246 5989.499246 6568.486232 0.851696452 0.839880787 0.871247064 0.889276147 0.854382953 0.828107067 0.821185539 0.987694884 0.911853818 1 12.68134521 -8.263134466 24.99999386 0.962330768 0.851931616 0.777153597 0.02835869 73.77652542 1088069.766 0.014752434 0.007666489 5.46E-09 8.263134466 -0.110399152 KPLPDHVSIVEPKDEILPT(ph)TPISEQK ddPTM_K562_Paclitaxel_30min_R1 1 KPLPDHVSIVEPKDEILPTTPISEQK 26 2 E9PSF4;E9PPU1;H0YEU2;E9PL09;P23396;P23396-2 E9PSF4 RPS3 40S ribosomal protein S3 1 KPLPDHVSIVEPKDEILPT(0.437)T(0.437)PIS(0.126)EQK 73.389 0.0024763 22982000 1224.6 696.89 2782.5 1648.4 648.78 716.57 534.59 1400.5 767.46 1925.9 TRUE FALSE 1241.748178 772.9788069 2080.023461 1542.679002 737.1548199 843.6436284 636.0256618 1281.518783 841.1779621 1533.400523 0.809800284 0.504094524 1.3564776 1.006050917 0.480732078 0.550178258 0.414781169 0.835736498 0.548570285 1 10.58251886 -6.755894198 24.99984923 0.614534534 0.920703034 0.223133056 0.254333914 202.5439726 913142.0412 0.077385636 0.097059686 1.75E-07 6.755894198 0.3061685 KPLTSGMDAS(ph)ELT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 KPLTSGMDASELTPR 15 1 E9PPH6;Q8NEV8-2;Q8NEV8;F5GXG5 E9PPH6 EXPH5 Exophilin-5 2 KPLT(0.06)S(0.055)GMDAS(0.98)ELT(0.906)PR 60.564 0.025602 89465000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 KPNIFYSGPAS(ph)PARPR ddPTM_K562_Paclitaxel_30min_R1 1 KPNIFYSGPASPARPR 16 2 Q6PL18;Q6PL18-2 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 1 KPNIFYSGPAS(1)PARPR 113.05 0.0053782 227190000 4001.6 3311.7 5271.9 3746.5 3120.2 3218.5 2786.5 3838.4 3434.8 4343.8 TRUE FALSE 4057.634746 3673.282605 3940.943643 3506.216259 3545.224065 3789.255785 3315.223828 3512.303961 3764.727887 3458.531176 1.173224858 1.062093247 1.139484782 1.013787669 1.02506639 1.095625742 0.958564101 1.015547868 1.088533743 1 11.75594375 -2 0.429106675 1.021082992 3.854541573 0.463606755 0.04653281 72.94455606 0.920421728 0.030224601 178.5343174 0.01 2 2.833458581 KPPEADMNIFEDIGDYVPS(ph)TTKTPR ddPTM_K562_Paclitaxel_30min_R1 1 KPPEADMNIFEDIGDYVPSTTKTPR 25 2 Q13123 Q13123 IK Protein Red 1 KPPEADMNIFEDIGDY(0.001)VPS(0.294)T(0.294)T(0.294)KT(0.117)PR 76.492 0.00013226 9768000 1891.5 1518.8 3690.8 2312.2 1381.2 1051.5 1174.2 2182 1796.1 2498.2 TRUE FALSE 1917.986836 1684.62772 2759.011893 2163.905841 1569.342824 1237.968761 1396.99832 1996.62548 1968.62343 1989.065469 0.964265313 0.84694433 1.387089533 1.087900763 0.788985003 0.622387136 0.702339034 1.003800786 0.989722793 1 10.95787505 -6.756636244 24.95628565 0.832511551 1.078045312 0.271193001 0.17523085 159.6472256 829494.5123 0.056610039 0.070720992 1.75E-07 6.756636244 0.245533762 KPPLS(ph)PAQTNPVVQR ddPTM_K562_Paclitaxel_30min_R1 2 KPPLSPAQTNPVVQR 15 1 Q8IY33-4;Q8IY33-2;Q8IY33 Q8IY33-4 MICALL2 MICAL-like protein 2 1 KPPLS(0.996)PAQT(0.004)NPVVQR;KPPLS(1)PAQTNPVVQR 122.19 0.00021636 207567000 7233.2 5965.4 11362.4 7996.5 6320 5153.7 5237.2 7500.5 5039.4 9269.9 TRUE FALSE 7334.487116 6616.722546 8493.821592 7483.640281 7180.890998 6067.636333 6230.93136 6863.285708 5523.456887 7380.689292 0.993740127 0.896491138 1.150816849 1.013948696 0.972929589 0.822096161 0.844220792 0.929897661 0.748365995 1 12.84953984 -7.101004034 4.23916328 0.863538135 1.013345079 0.399961821 0.0845731 0.232547614 7.183080211 0.027999607 0.028382844 7.92E-08 7.101004034 0.149806944 KPRPS(ph)EGDEDCLPASK ddPTM_K562_Paclitaxel_30min_R1 1 KPRPSEGDEDCLPASK 16 2 Q5VU10;P78346;P78346-2 Q5VU10 RPP30 Ribonuclease P protein subunit p30 1 KPRPS(1)EGDEDCLPASK 107.41 0.0083845 39249000 4656.6 3429.6 9588.5 5459.5 3545.4 3040.2 2352.8 5267.3 4085.8 6512.2 TRUE FALSE 4721.806767 3804.055326 7167.764586 5109.352106 4028.343504 3579.336783 2799.231518 4819.809988 4478.259346 5185.010065 0.910664918 0.73366402 1.382401287 0.985408329 0.776921058 0.69032398 0.539870026 0.929566178 0.863693472 1 12.34013107 -6.740851933 6.071632183 0.777546876 1.012677509 0.206067891 0.192195989 0.252593832 30.73598292 0.060159511 0.075245078 1.82E-07 6.740851933 0.235130633 KPS(ph)PQPSS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 KPSPQPSSPR 10 1 G3V5E1;O75909-1;O75909;O75909-4 G3V5E1 CCNK Cyclin-K 2 KPS(1)PQPS(0.101)S(0.899)PR;KPS(1)PQPS(0.311)S(0.689)PR 104.9 0.0076709 25311000 13849.9 12438.4 23345 15911.2 12380.5 10909.7 9903.7 15453.2 12420.8 16599.1 TRUE FALSE 14043.84133 13796.46658 17451.26602 14890.72685 14066.9337 12844.38212 11782.87537 14140.3542 13613.87334 13216.19431 1.062623703 1.043906154 1.32044563 1.126703081 1.064370981 0.971866924 0.891548285 1.069926325 1.030090283 1 13.69001918 -6.952220191 3.024990396 0.991800018 1.144529171 0.414994895 0.081401866 0.268496721 5.022600475 0.029007366 0.032468062 1.12E-07 6.952220191 0.152729153 KPSVGVPPPASPS(ph)YPR ddPTM_K562_Paclitaxel_30min_R1 1 KPSVGVPPPASPSYPR 16 1 Q9P206;Q9P206-3;Q9P206-2 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 1 KPSVGVPPPAS(0.448)PS(0.535)Y(0.017)PR 70.538 0.023702 43130000 2200.2 1649.4 3021.8 2185.2 1786.7 1700.2 1288.1 2636.4 1712.3 2528.5 TRUE FALSE 2231.009588 1829.48707 2258.909217 2045.051053 2030.078789 2001.706598 1532.510251 2412.421364 1876.774066 2013.190312 1.108196068 0.908750186 1.122054484 1.015825995 1.008388912 0.994295763 0.761234664 1.198307656 0.932238773 1 10.97526785 -6.980661191 2.60424698 0.977350125 1.035298258 0.062288664 0.112914927 1.002678128 13.76245795 0.03841124 0.042353044 1.05E-07 6.980661191 0.057948133 KPVTVSPT(ph)TPT(ph)SPTEGEAS ddPTM_K562_Paclitaxel_30min_R1 1 KPVTVSPTTPTSPTEGEAS 19 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 2 KPVTVS(0.016)PT(0.921)T(0.065)PT(0.814)S(0.181)PTEGEAS(0.002) 103.67 0.0011704 39225000 1176.1 935.52 1994.6 1271.6 657.32 1003.4 909.29 1429.8 1260.9 1587.5 TRUE FALSE 1192.569029 1037.663237 1491.038561 1190.045267 746.8581125 1181.338902 1081.823031 1308.329565 1382.015079 1263.966629 0.943513066 0.82095778 1.179650259 0.941516366 0.59088436 0.934628237 0.855895248 1.035098187 1.093395227 1 10.30374266 -8.312953322 6.818609668 1.04982144 0.895010232 0.192620509 0.138262936 0.443874292 48.32391662 0.080124135 0.038322325 4.86E-09 8.312953322 -0.154811208 KPVTVSPT(ph)TPTSPTEGEAS ddPTM_K562_Paclitaxel_30min_R1 1 KPVTVSPTTPTSPTEGEAS 19 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 KPVT(0.001)VS(0.013)PT(0.579)T(0.394)PT(0.012)SPTEGEAS 87.138 0.0097606 17928000 537.16 573.83 984.52 919.61 545.64 713.08 464.55 737.49 670.51 893.81 TRUE FALSE 544.6818973 636.4827 735.9657496 860.6303306 619.9654058 839.5347259 552.6959374 674.8356212 734.9154814 711.6510314 0.765377795 0.894374731 1.034166631 1.209343193 0.871164909 1.179700006 0.776638989 0.948267608 1.032690812 1 9.475026157 -5.481195947 3.105074478 1.004427907 0.770143591 0.280063402 0.121607285 0.360654469 6.382871898 0.031438264 0.156682253 3.30E-06 5.481195947 -0.234284315 KPVTVSPTT(ph)PTSPTEGEAS ddPTM_K562_Paclitaxel_30min_R1 2 KPVTVSPTTPTSPTEGEAS 19 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 KPVTVS(0.002)PT(0.015)T(0.919)PT(0.052)S(0.01)PT(0.002)EGEAS;KPVTVS(0.002)PT(0.015)T(0.521)PT(0.439)S(0.013)PT(0.001)EGEAS(0.008) 99.238 0.0029922 229766000 2855.6 2521.3 4374.1 2895.1 1891.17 2450.5 2067.51 3005.1 2183.5 3088.9 TRUE FALSE 2895.58721 2796.58406 3269.804357 2709.421244 2148.779372 2885.061768 2459.809229 2749.797998 2393.234931 2459.380484 1.177364474 1.137109153 1.329523584 1.101668189 0.87370758 1.173084761 1.00017433 1.118085638 0.973104791 1 11.26407923 -6.515729926 24.99340721 1.030963261 1.208357728 0.482391416 0.088594903 283.3658848 990693.648 0.024712175 0.033258825 3.05E-07 6.515729926 0.177394467 KPVTVSPTTPT(ph)SPTEGEAS ddPTM_K562_Paclitaxel_30min_R1 1 KPVTVSPTTPTSPTEGEAS 19 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 KPVTVSPT(0.005)T(0.113)PT(0.637)S(0.113)PT(0.113)EGEAS(0.017) 87.99 0.0082816 40653000 2723.8 2102.8 3673.8 2607.4 2186 2171.2 2197.5 2858.5 2061 3128.5 TRUE FALSE 2761.941604 2332.390815 2746.303753 2440.173034 2483.770209 2556.231835 2614.464153 2615.652583 2258.968259 2490.909983 1.108808276 0.936360941 1.102530309 0.979631159 0.997133669 1.026224092 1.049602022 1.050079128 0.906884743 1 11.28245717 -4.573013707 5.127734752 1.011352838 16.20869165 0.23981761 0.054224117 3778.860101 450.4798755 0.012928705 667026.2949 2.67E-05 4.573013707 15.19733881 KPVTVSPTTPTS(ph)PTEGEAS ddPTM_K562_Paclitaxel_30min_R1 1 KPVTVSPTTPTSPTEGEAS 19 1 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 KPVTVSPTT(0.001)PT(0.196)S(0.791)PT(0.01)EGEAS(0.002) 90.259 0.0032425 169010000 1708.3 1508.9 3006.3 1779.1 1359.2 1328.8 1326.1 2246.1 1812.5 1963.1 TRUE FALSE 1732.221471 1673.646805 2247.322384 1664.996489 1544.346051 1564.444023 1577.720552 2055.279785 1986.598723 1563.019142 1.108253523 1.070778188 1.437808612 1.065243824 0.988053191 1.00091162 1.009405777 1.314942172 1.271000892 1 10.61011973 -12.23235884 2.42593245 0.495256799 1.137833433 0.078815412 0.144014646 14491742.29 3675800.554 40103016.07 0.039170986 5.86E-13 12.23235884 0.642576634 KQEET(ph)T(ph)LCEK ddPTM_K562_Paclitaxel_30min_R1 1 KQEETTLCEK 10 1 A6NK02 A6NK02 TRIM75P Putative tripartite motif-containing protein 75 2 KQEET(1)T(1)LCEK 70.942 0.01905 0 232.72 178.8 378.08 235.01 117.09 199.34 170.5 166.09 159.36 267.11 TRUE FALSE 235.978798 198.3219887 282.629028 219.9375105 133.0396404 234.6901501 202.8514849 151.9796178 174.66724 212.6728354 1.109585987 0.932521487 1.328938073 1.034158923 0.625560101 1.10352669 0.953819441 0.714616973 0.821295488 1 7.73249196 -6.53498375 24.87688759 0.867642613 1.11739629 0.355561668 0.156123248 231.9645555 476705.6803 0.045951038 0.059365151 2.92E-07 6.53498375 0.249753677 KQEGPATQVDSAVGTLPATS(ph)PQSTSVQAK ddPTM_K562_Paclitaxel_30min_R1 1 KQEGPATQVDSAVGTLPATSPQSTSVQAK 29 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06 E7ETY2 TCOF1 Treacle protein 1 KQEGPATQVDSAVGT(0.001)LPAT(0.46)S(0.53)PQS(0.003)T(0.004)S(0.001)VQAK 115.74 2.28E-12 16778000 3080.2 2126.2 7094 3437.7 2439.7 2195.8 1986.2 3213.4 2412.2 4414.8 TRUE FALSE 3123.332303 2358.345706 5303.031963 3217.221309 2772.028444 2585.194299 2363.071081 2940.401613 2643.902588 3515.061337 0.888556985 0.670925904 1.508659865 0.915267473 0.78861453 0.735462074 0.672270227 0.836515022 0.752163998 1 11.77933415 -6.606809523 5.104379879 0.78211682 1.020933262 0.183105221 0.211032302 0.333038796 14.9226293 0.063876633 0.083390507 2.47E-07 6.606809523 0.238816442 KQGGS(ph)PDEPDSK ddPTM_K562_Paclitaxel_30min_R1 1 KQGGSPDEPDSK 12 1 V9GZ50;Q9ULX6-2;Q9ULX6 V9GZ50 AKAP8L A-kinase anchor protein 8-like 1 KQGGS(1)PDEPDSK 80.508 0.019172 22750000 6191.2 4307.8 14161 7000 5884 4492.7 4050.9 7441.4 6324.9 10289 TRUE FALSE 6277.895901 4778.140172 10585.88041 6551.051331 6685.500417 5289.417264 4819.537128 6809.206622 6932.434905 8192.096152 0.76633572 0.583262218 1.292206563 0.799679497 0.816091546 0.64567324 0.588315498 0.831192224 0.846234563 1 13.00001693 KQPPVS(ph)PGTALVGSQK ddPTM_K562_Paclitaxel_30min_R1 2 KQPPVSPGTALVGSQK 16 1 P17096;P17096-3 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 KQPPVS(0.991)PGT(0.009)ALVGSQK;KQPPVS(0.5)PGT(0.5)ALVGSQK 124.76 4.63E-05 103370000 10653.4 8582.9 20390.4 11638.3 8405.6 6355 6954.6 9836.3 5212.1 14030.8 TRUE FALSE 10802.58047 9520.010048 15242.59133 10891.87153 9550.585028 7481.970021 8274.199045 9000.644919 5712.745493 11171.31526 0.966992715 0.852183456 1.364440174 0.974985602 0.854920375 0.669748355 0.740664716 0.8056925 0.511376267 1 13.44751143 -6.847455247 2.847979515 0.735274121 1.054706321 0.409407746 0.166917088 0.252762583 4.15191942 0.054259015 0.064555855 1.42E-07 6.847455247 0.3194322 KQPPVSPGTALVGSQKEPSEVPT(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 KQPPVSPGTALVGSQKEPSEVPTPK 25 2 P17096;P17096-3 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 KQPPVSPGTALVGSQKEPS(0.003)EVPT(0.997)PK 75.718 0.0027371 17974000 2411.3 931.99 4845.8 2429.5 1441.5 994.37 1123.8 1729.1 2035.6 3724.1 TRUE FALSE 2445.065639 1033.74782 3622.417858 2273.682744 1637.856705 1170.707558 1337.035183 1582.202162 2231.128475 2965.126376 0.824607565 0.348635333 1.22167402 0.76680804 0.552373321 0.394825518 0.450920134 0.533603618 0.752456453 1 11.53387788 -6.733416321 7.075598315 0.571480172 0.79086354 0.090041018 0.254290562 0.369560331 63.75562613 0.075403009 0.095481625 1.85E-07 6.733416321 0.219383367 KQS(ph)LGELIGTLNAAK ddPTM_K562_Paclitaxel_30min_R1 3 KQSLGELIGTLNAAK 15 1 P60174;P60174-3 P60174 TPI1 Triosephosphate isomerase 1 KQS(1)LGELIGTLNAAK;KQS(1)LGELIGTLNAAK;KQS(1)LGELIGTLNAAK 167.93 3.89E-05 164114000 9242.4 7311.1 15979.4 9976 7390.3 6278.45 6811.8 12025.1 9681 17374.4 TRUE FALSE 9371.822115 8109.350623 11945.20284 9336.184011 8396.983979 7391.844954 8104.30349 11003.4927 10610.90331 13833.48774 0.677473555 0.586211574 0.863499 0.674897335 0.607004115 0.534344273 0.585846725 0.795424328 0.767044689 1 13.75587732 -9.032514114 1.345792753 0.994043093 0.652302612 0.570717471 0.090951432 0.372875201 1.511805661 0.092423377 0.028023366 9.28E-10 9.032514114 -0.341740481 KQSAGPNS(ph)PTGGGGGGGSGGTR ddPTM_K562_Paclitaxel_30min_R1 1 KQSAGPNSPTGGGGGGGSGGTR 22 1 H7BZ52;S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2 H7BZ52 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 KQS(0.001)AGPNS(0.771)PT(0.208)GGGGGGGS(0.01)GGT(0.01)R 59.263 0.012923 2752700 733.96 419.74 773.11 574.38 590.76 392.29 412.21 645.81 580.88 606.9 TRUE FALSE 744.2377045 465.5686327 577.9288188 537.5418376 671.2315136 461.8571235 490.4246956 590.9444095 636.6761194 483.2134469 1.540184176 0.963484431 1.196011457 1.112431455 1.389099409 0.955803541 1.014923527 1.222946947 1.317587753 1 8.916516792 -7.267776777 24.99503803 1.110728502 1.215308895 0.124297358 0.176335957 1519.085039 5991331.481 0.061255818 0.055351452 5.40E-08 7.267776777 0.104580393 KQSFDDNDS(ph)EELEDKDSK ddPTM_K562_Paclitaxel_30min_R1 1 KQSFDDNDSEELEDKDSK 18 2 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 KQSFDDNDS(1)EELEDKDSK 101.16 0.0064328 27246000 2244 1357.6 6506.2 2013.1 1010.1 883.65 731.98 1702.8 1715.2 3495.4 TRUE FALSE 2275.422923 1505.827359 4863.629342 1883.988776 1147.692721 1040.35292 870.8693838 1558.136511 1879.952624 2783.035561 0.817604689 0.541073704 1.747598705 0.676954618 0.412388809 0.373819485 0.312920681 0.559869422 0.675504349 1 11.44244363 -6.509577207 24.94231174 0.515430002 1.02370486 0.28478996 0.336677918 729.1174837 1367201.662 0.095857728 0.135215273 3.09E-07 6.509577207 0.508274859 KQTTYQSDY(ph)DK ddPTM_K562_Paclitaxel_30min_R1 1 KQTTYQSDYDK 11 1 Q8N6G2 Q8N6G2 TEX26 Testis-expressed sequence 26 protein 1 KQT(0.015)T(0.012)Y(0.01)QS(0.087)DY(0.877)DK 42.556 0.031203 0 4336.8 3947.1 6025.8 4428.5 4025.3 3205.6 3500.8 4011.4 3554.3 4152.1 TRUE FALSE 4397.52858 4378.057726 4504.512264 4144.475831 4573.614009 3774.068151 4165.058525 3670.606532 3895.706396 3305.899741 1.330206275 1.324316546 1.362567717 1.253660473 1.383470271 1.141616034 1.259886521 1.110319979 1.178410327 1 11.69082726 -8.359100933 0.390448626 0.992984365 1.362992445 0.752816509 0.058619537 0.51097245 0.22289421 0.069180679 0.057478514 4.37E-09 8.359100933 0.37000808 KREEGS(ph)DIEDEDMEELLNDTR ddPTM_K562_Paclitaxel_30min_R1 5 KREEGSDIEDEDMEELLNDTR 21 2 F5H5U2;Q8NHQ9-2;Q8NHQ9 F5H5U2 DDX55 ATP-dependent RNA helicase DDX55 1 KREEGS(1)DIEDEDMEELLNDTR;KREEGS(1)DIEDEDMEELLNDTR;KREEGS(1)DIEDEDMEELLNDTR;KREEGS(1)DIEDEDMEELLNDTR;KREEGS(1)DIEDEDMEELLNDTR 102.47 0.00028984 344190000 12450.4 9685.8 20137.4 12910.1 9013.1 8682.2 7406.1 12547.4 12387.3 14953.3 TRUE FALSE 12624.74401 10743.3284 15053.46431 12082.10397 10240.83681 10221.86627 8811.368813 11481.42005 13577.15551 11905.80925 1.060385207 0.902360198 1.264379766 1.014807454 0.860154618 0.858561233 0.740089869 0.964354443 1.140380736 1 13.53937807 -5.226317083 20.89802862 0.966800406 1.060386917 0.033083756 0.14168124 7150.171582 4253721.392 0.038115298 4.469833889 5.94E-06 5.226317083 0.093586511 KRS(ph)S(ph)RPAS(ph)ASS(ph)S(ph)TK ddPTM_K562_Paclitaxel_30min_R1 1 KRSSRPASASSSTK 14 3 A0A0D9SFT8;F6M2K2;Q14686 A0A0D9SFT8 NCOA6 Nuclear receptor coactivator 6 5 KRS(1)S(1)RPAS(0.707)AS(0.429)S(0.71)S(0.612)T(0.542)K 47.113 0.028476 11152000 398.51 301.29 420.83 315.07 394.64 371.62 185.77 415.73 470.19 408.16 TRUE FALSE 404.0903695 334.1858611 314.5862617 294.8628204 448.3966493 437.5215892 221.0188877 380.4111416 515.3538504 324.976768 1.243443868 1.028337697 0.968026926 0.907335076 1.379780629 1.346316513 0.680106732 1.170579497 1.585817514 1 8.344192776 -6.743798868 24.99324007 1.184240345 1.031271157 0.091812943 0.240507114 698.082208 989045.0674 0.073999392 0.095316026 1.80E-07 6.743798868 -0.152969189 KRS(ph)WSSEEESNQATGTSR ddPTM_K562_Paclitaxel_30min_R1 2 KRSWSSEEESNQATGTSR 18 2 F6UZG9;Q8NFZ0;Q8NFZ0-2 F6UZG9 FBXO18 F-box only protein 18 1 KRS(0.998)WS(0.002)SEEESNQATGTSR;KRS(0.999)WS(0.001)SEEESNQATGTSR 111.78 0.00047317 20710000 2113.84 1832.42 3484.6 1982.32 1868.91 1799.49 1707.65 2162.1 1935.43 2457.8 TRUE FALSE 2143.440282 2032.489812 2604.869633 1855.182868 2123.487183 2118.604285 2031.667673 1978.41611 2121.336699 1956.899011 1.095324935 1.03862785 1.331121135 0.948021772 1.085128651 1.082633429 1.038207726 1.010995508 1.084029726 1 10.93435359 -6.317974842 24.99997848 1.040167376 1.143388555 0.310733936 0.080769077 371.3954861 164230.0117 0.022210657 0.032943736 4.81E-07 6.317974842 0.103221179 KS(ph)ASPEVSEGHENQHGQESEAK ddPTM_K562_Paclitaxel_30min_R1 2 KSASPEVSEGHENQHGQESEAK 22 1 O60930 O60930 RNASEH1 Ribonuclease H1 1 KS(0.498)AS(0.498)PEVS(0.003)EGHENQHGQESEAK;KS(0.5)AS(0.5)PEVSEGHENQHGQESEAK 87.356 0.00028116 24825000 6194.9 4399.4 13230.4 6522.4 4626.6 3987.3 3817.5 6564.2 5878.2 8633.4 TRUE FALSE 6281.647713 4879.74137 9890.221888 6104.082457 5256.821249 4694.391671 4541.850696 6006.530238 6442.827374 6873.908341 0.913839318 0.709893285 1.438806193 0.888007543 0.764749977 0.682929047 0.660737745 0.873815876 0.937287356 1 12.7469149 -6.515738814 24.96020146 0.80130907 1.018693602 0.171043581 0.195239022 534.1523848 1867324.849 0.057976654 0.078046197 3.05E-07 6.515738814 0.217384532 KS(ph)GEEQR ddPTM_K562_Paclitaxel_30min_R1 1 KSGEEQR 7 1 F5GZV9;F5H6N9;F8W6Z2;F5H2E5;F5H595;O15553-3;O15553-1;O15553 F5GZV9 MEFV Pyrin 1 KS(1)GEEQR 81.95 0.021187 20833000 906.76 887.22 1633.6 894.18 1290.8 1292 754.07 835.24 810.47 787.52 TRUE FALSE 919.4574376 984.08968 1221.177476 836.831297 1466.628813 1521.118059 897.150846 764.2811486 888.3192648 627.0229917 1.466385523 1.569463469 1.94758006 1.334610227 2.339035144 2.425936655 1.430810126 1.218904504 1.416725186 1 9.292374535 -7.98490696 24.81286999 1.255660229 1.845686295 0.418798853 0.341245928 233.8520284 384450.4596 0.152414083 0.102714934 1.04E-08 7.98490696 0.590026066 KS(ph)LY(ph)ES(ph)FVS(ph)S(ph)SDRLR ddPTM_K562_Paclitaxel_30min_R1 1 KSLYESFVSSSDRLR 15 2 A2ABK4;A0A0A0MT02;P18615;P18615-3 A2ABK4 NELFE Negative elongation factor E 5 KS(1)LY(1)ES(1)FVS(0.742)S(0.656)S(0.602)DRLR 56.719 0.025615 6343500 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 KS(ph)PRPAGPQLFLPDPDPQR ddPTM_K562_Paclitaxel_30min_R1 1 KSPRPAGPQLFLPDPDPQR 19 2 Q9BUH6 Q9BUH6 C9orf142 Protein PAXX 1 KS(1)PRPAGPQLFLPDPDPQR 58.635 0.020548 28727000 2451.7 2415.1 4805.2 2799.3 2487.1 2299.7 1964.6 3272.9 1529.9 3971.3 TRUE FALSE 2486.031364 2678.788785 3592.06783 2619.765427 2825.885127 2707.519506 2337.372594 2994.846716 1676.853731 3161.94688 0.786234386 0.847196011 1.136030416 0.828529234 0.893716825 0.856282413 0.739219437 0.947152761 0.530323182 1 11.62659742 -7.345931857 1.820040156 0.798675562 0.909999389 0.07846469 0.14693594 0.870875879 5.697615698 0.061408437 0.052834227 4.51E-08 7.345931857 0.111323827 KS(ph)QSPS(ph)PKNESAR ddPTM_K562_Paclitaxel_30min_R1 1 KSQSPSPKNESAR 13 2 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 2 KS(0.999)QS(0.222)PS(0.777)PKNES(0.003)AR 92.236 0.030044 2389700 3096.3 2511.5 8439.2 4072.4 2737.7 1898.3 2027.6 3416.5 3435.8 5034.2 TRUE FALSE 3139.657753 2785.714063 6308.619585 3811.214491 3110.62109 2234.936852 2412.326515 3126.247 3765.823942 4008.227277 0.783303325 0.694999029 1.573917632 0.950847901 0.776059059 0.557587357 0.601843745 0.779957518 0.939523555 1 11.9687486 -6.723418628 4.620450684 0.743791134 1.025314901 0.156334156 0.25123929 0.33809402 16.20378672 0.079936861 0.10104446 1.89E-07 6.723418628 0.281523767 KS(ph)SPPASSPQPEAPTSSWR ddPTM_K562_Paclitaxel_30min_R1 2 KSSPPASSPQPEAPTSSWR 19 1 P43250-2 P43250-2 1 KS(0.839)S(0.161)PPASSPQPEAPTSSWR;KS(0.5)S(0.5)PPASSPQPEAPTSSWR 140.12 3.61E-13 67497000 3295.4 2720.1 5562.6 4004.4 2795.3 2503.6 2552.5 3298.5 3378.5 4134.4 TRUE FALSE 3341.545767 3017.089717 4158.252833 3747.575707 3176.067185 2947.578308 3036.82355 3018.271836 3703.020021 3291.807011 1.015109864 0.91654514 1.263212825 1.138455473 0.964840033 0.89542865 0.922539973 0.916904249 1.124920145 1 11.68466404 -6.780607807 23.29766789 0.960438495 1.084266241 0.222389581 0.102013645 163.829562 199119.9182 0.033378921 0.037924572 1.66E-07 6.780607807 0.123827746 KSDASDMNSDTS(ph)PSCR ddPTM_K562_Paclitaxel_30min_R1 1 KSDASDMNSDTSPSCR 16 1 Q86WR7;Q86WR7-2;X6RHS9 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 KSDASDMNS(0.014)DT(0.137)S(0.647)PS(0.201)CR 74.325 0.019608 18404000 3351.7 2562.8 5118.5 3167.7 2423.8 2185.6 2249.7 2878.1 2568.7 3026.5 TRUE FALSE 3398.634141 2842.615171 3826.27137 2964.5379 2753.962595 2573.185473 2676.568831 2633.58744 2815.435112 2409.697639 1.410398585 1.179656371 1.587863684 1.230253063 1.142866454 1.067845787 1.110748829 1.09291199 1.168376923 1 11.23463642 -6.591763027 3.52112701 1.100983155 1.376513549 0.622396893 0.102307152 0.154486536 3.857764124 0.029844861 0.040402079 2.56E-07 6.591763027 0.275530394 KSEAGHAS(ph)SPDSEVTSLCQK ddPTM_K562_Paclitaxel_30min_R1 1 KSEAGHASSPDSEVTSLCQK 20 1 Q6NZY4-2;Q6NZY4 Q6NZY4-2 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 KS(0.051)EAGHAS(0.821)S(0.127)PDSEVTSLCQK 119.76 1.87E-05 36468000 4080.3 2803 8145.6 4257.6 2798.7 2382.8 2239.6 3823.3 3070.6 4837.4 TRUE FALSE 4137.436789 3109.041019 6089.142536 3984.536592 3179.930322 2805.356124 2664.552409 3498.486801 3365.54485 3851.535225 1.074230546 0.807221235 1.580965039 1.03453204 0.825626701 0.728373482 0.691815666 0.908335663 0.87381905 1 11.9112179 -6.661189656 4.461518821 0.820743085 1.145795594 0.348179971 0.194822514 0.23784462 8.289681496 0.059633104 0.077347385 2.18E-07 6.661189656 0.325052509 KSEAGHASS(ph)PDSEVTSLCQK ddPTM_K562_Paclitaxel_30min_R1 2 KSEAGHASSPDSEVTSLCQK 20 1 Q6NZY4-2;Q6NZY4 Q6NZY4-2 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 KS(0.002)EAGHAS(0.37)S(0.419)PDS(0.204)EVT(0.002)S(0.003)LCQK;KS(0.366)EAGHAS(0.039)S(0.461)PDS(0.133)EVT(0.001)SLCQK 100.62 0.00040401 42022400 6725.7 5055 13112.4 7781.5 5452.5 4375.4 4568.7 8043.4 6786.5 9158.4 TRUE FALSE 6819.880551 5606.921995 9802.012448 7282.429419 6195.222812 5151.315756 5435.586975 7360.062965 7438.373648 7291.913053 0.935266301 0.76892332 1.344230571 0.998699431 0.849601849 0.70644229 0.74542674 1.009345958 1.020085346 1 12.83208164 KSEAGHASSPDS(ph)EVTSLCQK ddPTM_K562_Paclitaxel_30min_R1 1 KSEAGHASSPDSEVTSLCQK 20 1 Q6NZY4-2;Q6NZY4 Q6NZY4-2 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 KS(0.197)EAGHAS(0.246)S(0.246)PDS(0.308)EVT(0.003)S(0.001)LCQK 53.278 0.021292 9976700 3488.1 2251.4 7020.5 3855.3 3061.5 2379 2001 4480.7 3663.7 4951.3 TRUE FALSE 3536.944162 2497.215466 5248.087947 3608.038314 3478.528132 2800.882247 2380.679304 4100.036567 4015.614755 3942.222342 0.897195504 0.633453735 1.33125113 0.915229533 0.882377459 0.710483074 0.603892703 1.040031792 1.018617015 1 11.94479343 KSEEEIDFLR ddPTM_K562_Paclitaxel_30min_R1 2 KSEEEIDFLR 10 1 B0QY90;B0QY89;Q9Y262-2;Q9Y262 B0QY90 EIF3L Eukaryotic translation initiation factor 3 subunit L 0 ; 107.55 0.0089476 13591300 5350.8 4461.7 8490.5 6081.2 4752.7 4773.3 4137.3 6377.7 5777 7412.8 FALSE TRUE 5425.727709 4948.843495 6346.968266 5691.17905 5400.098204 5619.777735 4922.331077 5835.874577 6331.906662 5902.067291 0.919292756 0.838493235 1.075380532 0.96426875 0.914950294 0.952171071 0.834001179 0.988784826 1.072828612 1 12.52700465 -8.518688335 24.44723619 1.034545161 0.930847261 0.307777381 0.065890218 175.4978346 1023918.017 0.043053683 0.01715807 3.03E-09 8.518688335 -0.103697899 KSMS(ph)TVIRNPNGGFRMYSK ddPTM_K562_Paclitaxel_30min_R1 1 KSMSTVIRNPNGGFRMYSK 19 3 P23634-5;P23634-4;P23634-3;P23634-2;P23634-7;P23634-6;P23634-8;P23634 P23634-5 ATP2B4 Plasma membrane calcium-transporting ATPase 4 1 KS(0.292)MS(0.354)T(0.354)VIRNPNGGFRMYSK 52.026 0.025526 7682400 724.28 545.37 824.92 744.75 719.6 702.46 813.07 971.94 501.18 970.64 TRUE FALSE 734.4221546 604.9153409 616.6587435 696.9850684 817.6217029 827.031418 967.345788 889.3676303 549.3205783 772.8230352 0.950310901 0.782734615 0.797930076 0.90186891 1.057967563 1.070143332 1.251704134 1.150803728 0.710797367 1 9.593994286 -6.664995501 3.437800675 1.060941535 0.838656178 0.295677455 0.137271386 0.278959367 6.462947819 0.043443525 0.056843363 2.16E-07 6.664995501 -0.222285357 KSNLDEEVNVIPPHT(ph)PVR ddPTM_K562_Paclitaxel_30min_R1 4 KSNLDEEVNVIPPHTPVR 18 1 P06400;A0A3B3IS71 P06400 RB1 Retinoblastoma-associated protein 1 KSNLDEEVNVIPPHT(1)PVR;KSNLDEEVNVIPPHT(1)PVR;KSNLDEEVNVIPPHT(1)PVR;KSNLDEEVNVIPPHT(1)PVR 132.26 1.12E-08 215955000 21032.1 17929.6 30798.9 20957.1 16473.3 17093.2 18709.2 27335.9 20919.3 35473.5 TRUE FALSE 21326.61429 19887.21436 23023.33678 19613.00541 18717.24236 20124.43902 22259.17303 25013.54467 22928.69223 28243.98123 0.755085273 0.704122206 0.815159045 0.694413626 0.662698442 0.712521328 0.788103237 0.885623895 0.811808082 1 14.78565584 -8.815881806 0.782595567 0.989862492 0.722443655 0.72747768 0.050559191 0.330332862 0.454583993 0.050744725 0.019716885 1.53E-09 8.815881806 -0.267418836 KSPQPVPLS(ph)PCPR ddPTM_K562_Paclitaxel_30min_R1 1 KSPQPVPLSPCPR 13 1 Q13356-2 Q13356-2 1 KS(0.003)PQPVPLS(0.997)PCPR 70.942 0.031077 10998000 1577 1543.7 2563.9 1525.5 1160.8 1057.8 1124.1 1917.6 1665 2044.5 TRUE FALSE 1599.082865 1712.246386 1916.611735 1427.661258 1318.920613 1245.385978 1337.392107 1754.687911 1824.930689 1627.829778 0.982340345 1.051858376 1.177403044 0.877033506 0.810232514 0.765059096 0.821579827 1.077930834 1.121082016 1 10.66873413 -6.279271184 24.85069419 0.91223148 1.068666376 0.237496649 0.118260993 1107.968233 1544079.758 0.037383863 0.055579274 5.26E-07 6.279271184 0.156434896 KSS(ph)LVTSK ddPTM_K562_Paclitaxel_30min_R1 1 KSSLVTSK 8 1 A6NMQ3;Q5T5H1;O43768-6;O43768-5;O43768-2;O43768;O43768-9;O43768-7;O43768-3;O43768-4;A0A1W2PRU0 A6NMQ3 ENSA Alpha-endosulfine 1 KS(0.435)S(0.515)LVT(0.046)S(0.004)K 98.182 0.028995 140200000 2054.8 2190.1 6321.7 3909.7 2999.4 3075.2 2189.5 3977.5 1884.5 5603.4 TRUE FALSE 2083.57354 2429.222524 4725.708649 3658.949341 3407.96906 3620.543542 2604.946195 3639.586548 2065.514645 4461.424004 0.467019843 0.544494879 1.059237733 0.820130375 0.763874731 0.811521958 0.58388223 0.815790327 0.462972056 1 12.12328855 -5.547189705 24.87557052 0.778372089 0.486388354 0.325866036 0.164358155 206.5775865 211374.5904 0.040992012 0.108465025 2.84E-06 5.547189705 -0.291983735 KSSEAS(ph)PTAQR ddPTM_K562_Paclitaxel_30min_R1 1 KSSEASPTAQR 11 1 J3KNN7;Q7Z569 J3KNN7 BRAP BRCA1-associated protein 1 KSS(0.005)EAS(0.778)PT(0.217)AQR 113.54 0.0092255 1923800 351.71 407.68 533.74 298.06 240.04 167.98 351.01 500.24 318.55 498.8 TRUE FALSE 356.6350251 452.1918811 398.9907358 278.9437657 272.7375119 197.7688944 417.6123151 457.7414896 349.1481508 397.1442862 0.89799863 1.138608553 1.004649317 0.702373861 0.68674666 0.497977439 1.051538017 1.152582337 0.879146857 1 8.633519437 -11.29227119 14.44630895 1 0.890274762 0.026394798 0.200093335 0 0 0.215809418 0.052341473 5.10E-12 11.29227119 -0.109725238 KSSEGGVGVGPGGGDEPPTS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 KSSEGGVGVGPGGGDEPPTSPR 22 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 KSSEGGVGVGPGGGDEPPT(0.438)S(0.562)PR 76.186 0.0013204 8369900 648.1 566.38 1064.2 915.17 637.65 823.21 699.25 891.43 782.64 1273.2 TRUE FALSE 657.1753996 628.2192838 795.5295481 856.4750923 724.5087255 969.1947351 831.9290372 815.6974574 857.8160689 1013.721141 0.648280255 0.619716072 0.784761722 0.844882342 0.714702196 0.956076278 0.820668528 0.80465665 0.846205168 1 9.985445129 -3.498461507 0.216052203 0.943580577 1.14E-31 0.631383639 0.06970924 19.01306039 0.419348409 0.1208047 5.451400095 0.00031735 3.498461507 -0.943580577 KSSQLGMEEEDVIEVY(ph)QEQT(ph)GGHSTV ddPTM_K562_Paclitaxel_30min_R1 1 KSSQLGMEEEDVIEVYQEQTGGHSTV 26 1 B8ZZN6 B8ZZN6 SUMO1 2 KSSQLGMEEEDVIEVY(0.91)QEQT(0.741)GGHS(0.257)T(0.091)V 59.614 0.00303 6569600 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 KSSVNGSS(ph)ATSSG ddPTM_K562_Paclitaxel_30min_R1 1 KSSVNGSSATSSG 13 1 R4GMX3;P35226 R4GMX3 COMMD3-BMI1;BMI1 Polycomb complex protein BMI-1 1 KS(0.008)S(0.008)VNGS(0.11)S(0.814)AT(0.058)S(0.001)SG 98.368 0.018146 19341000 4353.6 3476.2 6190.6 4226.4 2820.8 2976.4 2693 4018.5 3699.6 4509.6 TRUE FALSE 4414.563832 3855.743272 4627.706466 3955.337621 3205.040717 3504.222749 3203.982692 3677.103342 4054.96311 3590.541045 1.229498222 1.073861355 1.288860483 1.101599333 0.892634474 0.97595953 0.892339804 1.024108427 1.129345984 1 11.80998554 -6.544627471 7.125067362 0.982593659 1.186970925 0.583994029 0.080533764 0.117705065 24.74249523 0.023953506 0.031560022 2.85E-07 6.544627471 0.204377266 KSYES(ph)SEDCSEAAGSPAR ddPTM_K562_Paclitaxel_30min_R1 1 KSYESSEDCSEAAGSPAR 18 1 Q6P6C2-3;Q6P6C2;K7ER58 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 KS(0.001)YES(0.83)S(0.169)EDCSEAAGSPAR 81.48 0.0051051 7621500 1731.4 1444.5 2424.4 1880.3 1304.5 1063.5 1235.1 1441 2366.6 1964.7 TRUE FALSE 1755.644942 1602.215395 1812.330235 1759.705974 1482.194985 1252.096793 1469.453777 1318.578056 2593.922504 1564.293062 1.122324828 1.024242474 1.158561832 1.12492091 0.947517458 0.800423414 0.939372432 0.842922652 1.658207511 1 10.6112951 -11.86603834 2.835000071 0.979227923 1.049807108 0.001973496 0.228294873 122338529.6 32556609.99 16662559.48 0.05609795 1.36E-12 11.86603834 0.070579186 KSYESSEDCSEAAGS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 4 KSYESSEDCSEAAGSPAR 18 1 Q6P6C2-3;Q6P6C2;K7ER58 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 KSYESSEDCSEAAGS(1)PAR;KSYESSEDCSEAAGS(1)PAR;KSYESSEDCSEAAGS(1)PAR;KSYESSEDCSEAAGS(1)PAR 213.71 3.92E-25 128599000 9655.8 8437.3 14672.8 9802.9 8537.1 7947.8 7229.9 10456.8 8752.7 12411.5 TRUE FALSE 9791.010991 9358.512947 10968.47017 9174.18587 9699.997554 9357.230737 8601.735782 9568.429571 9593.435943 9882.029487 0.990789494 0.947023378 1.109941048 0.928370623 0.981579499 0.946893626 0.87044223 0.968265636 0.970796126 1 13.27059165 KT(ph)AS(ph)WLAAELS(ph)KEGHQVALLS(ph)GEMMVEQR ddPTM_K562_Paclitaxel_30min_R1 1 KTASWLAAELSKEGHQVALLSGEMMVEQR 29 2 I3L352;I3L0H8;F6QDS0;H3BQK0;Q9UMR2-3;Q9NUU7-2;Q9UMR2-2;Q9UMR2-4;Q9NUU7;Q9UMR2 I3L352 DDX19A;DDX19B ATP-dependent RNA helicase DDX19B;ATP-dependent RNA helicase DDX19A 4 KT(1)AS(1)WLAAELS(1)KEGHQVALLS(1)GEMMVEQR 40.104 0.026043 60799000 1118.5 1031.2 1098 1270 1218.1 1083.1 1172.6 1091 1089.4 942.64 TRUE FALSE 1134.162451 1143.789903 820.7963201 1188.547884 1384.025843 1275.172578 1395.094729 998.3127402 1194.041738 750.5294506 1.511149829 1.523977377 1.093623068 1.583612586 1.844066001 1.6990307 1.858814105 1.330144659 1.590932557 1 9.551764874 -9.848622504 1.240450369 0.999016483 1.565538419 0.375992554 0.215839015 9.451090349 12.59524999 0.250010824 0.067464125 1.42E-10 9.848622504 0.566521936 KT(ph)SLFNHMASMGPR ddPTM_K562_Paclitaxel_30min_R1 1 KTSLFNHMASMGPR 14 1 Q9GZU3;Q9GZU3-4;Q9GZU3-3 Q9GZU3 TMEM39B Transmembrane protein 39B 1 KT(0.497)S(0.497)LFNHMAS(0.006)MGPR 70.281 0.015874 36112000 1277.8 1258.1 1346.9 1409.7 1205.8 1131.2 1107.6 1279 1128.6 1445.7 TRUE FALSE 1295.693142 1395.463613 1006.858437 1319.288152 1370.050374 1331.802437 1317.761318 1170.340967 1237.007073 1151.065546 1.125646707 1.212323327 0.874718594 1.146145114 1.190245315 1.157017028 1.144818661 1.016745719 1.074662582 1 10.16875427 -8.264212012 24.67023526 1.034278109 1.120507447 0.179475306 0.089121633 411.2521749 3659168.512 0.04769169 0.024523246 5.44E-09 8.264212012 0.086229338 KT(ph)SPASLDFPESQK ddPTM_K562_Paclitaxel_30min_R1 1 KTSPASLDFPESQK 14 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 KT(0.497)S(0.497)PAS(0.006)LDFPESQK 156.72 0.00039888 12413000 2544.7 1264.5 5008.8 2565.2 1489.4 1405.3 1545 2107.3 2156 3369.1 TRUE FALSE 2580.333651 1402.562386 3744.266492 2400.679553 1692.281496 1654.510224 1838.155685 1928.271712 2363.093433 2682.475571 0.961922516 0.522861196 1.395825011 0.89494927 0.630865576 0.616784824 0.685246011 0.718840363 0.880937541 1 11.38934932 -6.594682971 7.422751589 0.732532489 0.953677426 0.14507272 0.223832711 0.411184547 35.93063949 0.066073985 0.085489195 2.54E-07 6.594682971 0.221144937 KT(ph)T(ph)AS(ph)T(ph)RK ddPTM_K562_Paclitaxel_30min_R1 1 KTTASTRK 8 2 A0A3B3ITE0;A0A3B3ITW5;E7EPB6;P13569-2;P13569 A0A3B3ITE0 CFTR Cystic fibrosis transmembrane conductance regulator 4 KT(1)T(1)AS(1)T(1)RK 63.694 0.026085 9817700 152.69 123.98 54.419 140.08 0 214.61 0 168.01 199.29 254.37 TRUE FALSE 154.8281311 137.5165557 40.6802504 131.0958958 0 252.6680702 0 153.7365018 218.432695 202.5292544 0.764472923 0.67899601 0.200861108 0.647293628 0 1.247563326 0 0.75908294 1.078524165 1 7.661986503 -8.521168809 12.36550305 0.99940174 0.505406678 0.2630586 0.357499403 0.166357883 1081.153683 0.211601326 0.086261512 3.01E-09 8.521168809 -0.493995063 KT(ph)YEIWHR ddPTM_K562_Paclitaxel_30min_R1 1 KTYEIWHR 8 1 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8YDJ9;A0A2R8Y425;A0A2R8YD40;A0A2R8Y4X2;A0A2R8YDW2;A0A2R8Y7I0;A0A2R8Y7M9 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 KT(0.987)Y(0.013)EIWHR 71.342 0.026653 4123200 1383.2 1249.8 1768.9 1499.4 1142.8 1216.3 1101.6 1555.2 1752 1643.4 TRUE FALSE 1402.569068 1386.257391 1322.319318 1403.235195 1298.468708 1431.993727 1310.622849 1423.076053 1920.287428 1308.474178 1.071911919 1.059445738 1.010581133 1.072421007 0.99235333 1.094399684 1.00164212 1.087584361 1.467577626 1 10.35366974 -8.545494208 24.98586162 1.248386392 1.043810402 0.318947414 0.109399624 228.183955 252095.5894 0.065796831 0.024872263 2.85E-09 8.545494208 -0.204575989 KTAPTLS(ph)PEHWK ddPTM_K562_Paclitaxel_30min_R1 1 KTAPTLSPEHWK 12 1 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 KTAPT(0.002)LS(0.998)PEHWK 84.94 0.015074 42169000 1230.8 960.11 2869.7 1864.4 1218.3 957.19 1170.2 1979.4 1434.3 2140.6 TRUE FALSE 1248.034997 1064.938057 2145.208743 1744.825729 1384.253086 1126.934207 1392.239341 1811.237615 1572.070924 1704.344545 0.732266842 0.624837308 1.258670818 1.023751761 0.812190874 0.66121267 0.816876696 1.062717993 0.922390328 1 10.7350013 -8.253196644 24.58223535 0.994415621 0.85269555 0.128562826 0.176060207 1172.156668 3495726.849 0.092502688 0.052222428 5.58E-09 8.253196644 -0.141720071 KTGS(ph)YGALAEITASK ddPTM_K562_Paclitaxel_30min_R1 1 KTGSYGALAEITASK 15 1 O14974-5;O14974-4;O14974-3;O14974-2;O14974;H0YIS4;H0YHI8;A0A3B3ISH4;F8VZN8 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 KT(0.237)GS(0.763)YGALAEITASK 77.66 0.019128 45583000 3425 2514.7 6733.4 4323.1 2885.1 2567.9 2497.1 4205.8 3194.7 6194.2 TRUE FALSE 3472.960567 2789.26345 5033.469892 4045.835715 3278.099465 3023.28101 2970.911689 3848.491038 3501.565209 4931.81864 0.704194704 0.565564887 1.020611312 0.820353709 0.664683701 0.613015447 0.602396784 0.780339124 0.709994723 1 12.26790403 -11.29744024 3.755867877 1.000640284 0.720894945 0.310378195 0.125147993 200960700.2 300412872 1424646.188 0.033133029 5.04E-12 11.29744024 -0.279745338 KTPEGRAS(ph)PAPGSGHPEGPGAHLDMNSLDR ddPTM_K562_Paclitaxel_30min_R1 4 KTPEGRASPAPGSGHPEGPGAHLDMNSLDR 30 2 O94826 O94826 TOMM70A Mitochondrial import receptor subunit TOM70 1 KT(0.305)PEGRAS(0.583)PAPGS(0.112)GHPEGPGAHLDMNSLDR;KT(0.103)PEGRAS(0.825)PAPGS(0.071)GHPEGPGAHLDMNSLDR;KT(0.3)PEGRAS(0.624)PAPGS(0.074)GHPEGPGAHLDMNS(0.001)LDR;KT(0.2)PEGRAS(0.799)PAPGS(0.001)GHPEGPGAHLDMNSLDR 89.186 3.97E-07 993430000 6516.53 5556.18 11660.8 7231.4 5412.02 5519.23 4454.63 8228.45 9226.7 8323.6 TRUE FALSE 6607.781525 6162.822522 8716.886821 6767.610371 6149.22875 6497.987947 5299.872788 7529.391812 10112.96576 6627.245751 0.997062999 0.929922136 1.315310636 1.021179933 0.927870941 0.980496 0.799709712 1.136126846 1.525968123 1 12.6941937 -8.524627603 24.99703728 1.285671932 1.000902609 0.285108284 0.170263295 69.60819974 994837.8505 0.11079737 0.04252368 2.99E-09 8.524627603 -0.284769323 KTQMAEVLPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 KTQMAEVLPSPR 12 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 KTQMAEVLPS(1)PR;KTQMAEVLPS(1)PR 107.11 0.0041793 113364000 4355.5 3686.1 5932.1 4575.7 4033.8 4259.2 3809 5797.5 5749.2 6722 TRUE FALSE 4416.490438 4088.560864 4434.467988 4282.235082 4583.271853 5014.509318 4531.737866 5304.966188 6301.436348 5352.05271 0.825195617 0.763923878 0.828554618 0.800110783 0.856357757 0.936931975 0.84672893 0.991202157 1.177386825 1 12.38587661 -8.386954282 2.751623899 1.090441391 0.834767708 0.755801286 0.058573159 0.136407439 1.947413983 0.041946497 0.016559327 4.10E-09 8.386954282 -0.255673683 KTS(ph)SDDES(ph)EEDEDDLLQR ddPTM_K562_Paclitaxel_30min_R1 1 KTSSDDESEEDEDDLLQR 18 1 Q9Y5J1 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog 2 KT(0.441)S(0.549)S(0.01)DDES(1)EEDEDDLLQR 95.624 0.0035836 45787000 4712.3 2683.8 6274 3939.4 2622.5 2838.3 2413.3 3315.2 3851.6 4800.8 TRUE FALSE 4778.286739 2976.82636 4690.051104 3686.744516 2979.728899 3341.632653 2871.211077 3033.553067 4221.563389 3822.394325 1.250076871 0.778785784 1.226993006 0.964511822 0.779545135 0.874224993 0.751155122 0.793626405 1.104429065 1 11.9002609 -6.522991855 24.69536195 0.866909323 1.061488131 0.242443855 0.156032814 4.647917761 1014483.009 0.043809129 0.057172381 3.00E-07 6.522991855 0.194578808 KTS(ph)SVSSISQVSPER ddPTM_K562_Paclitaxel_30min_R1 1 KTSSVSSISQVSPER 15 1 P42356 P42356 PI4KA Phosphatidylinositol 4-kinase alpha 1 KT(0.019)S(0.949)S(0.019)VS(0.006)S(0.006)ISQVSPER 153.21 8.44E-05 15527000 2278 1993.4 4043 3118 2050.5 2605.5 2420 3277.6 3673.1 4218.1 TRUE FALSE 2309.899028 2211.046153 3022.294647 2918.025436 2329.812815 3067.548842 2879.182367 2999.147422 4025.917667 3358.448905 0.687787456 0.65835337 0.899907884 0.868861048 0.693716916 0.913382615 0.857295272 0.893015647 1.198743164 1 11.71357936 -8.245220969 1.109066523 1.08247702 0.774942546 0.569923291 0.101050763 0.393863164 0.857257737 0.089324715 0.035372401 5.69E-09 8.245220969 -0.307534474 KTSAVSS(ph)PLLDQQR ddPTM_K562_Paclitaxel_30min_R1 3 KTSAVSSPLLDQQR 14 1 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 KT(0.113)S(0.113)AVS(0.051)S(0.723)PLLDQQR;KT(0.002)S(0.007)AVS(0.234)S(0.757)PLLDQQR;KTS(0.002)AVS(0.212)S(0.785)PLLDQQR 151.38 0.00015265 158133000 10017.3 8859.8 13799.1 9759.7 8833.3 8182 6685.17 10675.5 9947.2 11260.9 TRUE FALSE 10157.57311 9827.142926 10315.34654 9133.756525 10036.54501 9632.962819 7953.646109 9768.549641 10902.67301 8965.922399 1.13290888 1.096054872 1.150505891 1.018719114 1.119410203 1.0743973 0.887097362 1.089519762 1.216012421 1 13.1302363 -6.254996059 24.82777008 1.057745546 1.12344638 0.130484988 0.081048308 1105.363713 4259232.303 0.022996213 0.038641145 5.56E-07 6.254996059 0.065700833 KTSDANET(ph)EDHLESLICK ddPTM_K562_Paclitaxel_30min_R1 1 KTSDANETEDHLESLICK 18 1 F2Z2T1;Q09161 F2Z2T1 NCBP1 Nuclear cap-binding protein subunit 1 1 KT(0.2)S(0.2)DANET(0.6)EDHLESLICK 70.917 0.027085 14351000 1158.3 919.54 2677.8 1384.8 930.34 952.77 859.59 1636.5 1167.8 1561.9 TRUE FALSE 1174.519774 1019.938487 2001.756271 1295.985126 1057.068059 1121.730382 1022.692715 1497.46911 1279.972408 1243.583923 0.94446362 0.82016056 1.609667217 1.042137247 0.850017469 0.90201422 0.822375311 1.204156055 1.029260981 1 10.28028816 KTSEGVT(ph)NEK ddPTM_K562_Paclitaxel_30min_R1 1 KTSEGVTNEK 10 1 Q13451 Q13451 FKBP5 "Peptidyl-prolyl cis-trans isomerase FKBP5;Peptidyl-prolyl cis-trans isomerase FKBP5, N-terminally processed" 1 KTSEGVT(1)NEK 90.149 0.019891 24936000 3372.8 3586.8 2826.8 3630 3847.2 3069.9 3770.9 3782 4943.9 3788.3 TRUE FALSE 3420.029606 3978.418954 2113.139379 3397.188047 4371.253774 3614.303661 4486.40859 3460.695493 5418.783685 3016.242381 1.133870948 1.318998426 0.700586727 1.126298095 1.449238232 1.198280246 1.487416468 1.147353248 1.796534562 1 11.55853665 -6.632966398 5.875728384 1.352198156 1.052509735 0.232331755 0.248417246 0.297687118 14.2857572 0.070676918 0.091552264 2.33E-07 6.632966398 -0.299688421 KTSFDQDS(ph)DVDIFPSDFPTEPPSLPR ddPTM_K562_Paclitaxel_30min_R1 4 KTSFDQDSDVDIFPSDFPTEPPSLPR 26 1 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 1 KT(0.002)S(0.001)FDQDS(0.997)DVDIFPSDFPTEPPSLPR;KT(0.025)S(0.01)FDQDS(0.965)DVDIFPSDFPTEPPSLPR;KT(0.017)S(0.006)FDQDS(0.977)DVDIFPSDFPTEPPSLPR;KT(0.005)S(0.007)FDQDS(0.988)DVDIFPSDFPTEPPSLPR 125.95 7.60E-11 543935000 15564.6 12259.7 24414.2 16399.8 10961.5 10945 10399.2 15929.3 15813.1 21180.9 TRUE FALSE 15782.55242 13598.25551 18250.53326 15347.99023 12454.64188 12885.94207 12372.39391 14576.00654 17332.01891 16864.22095 0.935860154 0.806337603 1.082204349 0.910091861 0.738524591 0.764099457 0.733647522 0.864315439 1.027739079 1 14.04167805 -4.801308735 14.40695037 0.871057013 48.15674965 0.013316735 0.118068904 6731873.813 3754542.123 0.031066692 10626430871 1.58E-05 4.801308735 47.28569263 KTSS(ph)DDES(ph)EEDEDDLLQR ddPTM_K562_Paclitaxel_30min_R1 1 KTSSDDESEEDEDDLLQR 18 1 Q9Y5J1 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog 2 KT(0.316)S(0.362)S(0.419)DDES(0.903)EEDEDDLLQR 86.557 0.011398 46858000 4224.2 3073.4 6044.1 4020.5 2817 2968.4 2681.6 3770.4 3726.1 4654.1 TRUE FALSE 4283.351833 3408.964206 4518.192203 3762.643125 3200.723092 3494.804062 3190.419601 3450.080986 4084.008554 3705.591865 1.155915705 0.919951341 1.219290296 1.015395991 0.86375489 0.943116293 0.860974364 0.931047215 1.102120444 1 11.85548828 -6.523458685 24.9972311 0.941696729 1.086675807 0.320083181 0.095926697 22.89841271 986950.5335 0.027483508 0.035809359 3.00E-07 6.523458685 0.144979078 KTVSLTPSPTTQVETPDLVDHDNT(ph)SPLFR ddPTM_K562_Paclitaxel_30min_R1 3 KTVSLTPSPTTQVETPDLVDHDNTSPLFR 29 1 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 KTVSLTPSPTTQVET(0.018)PDLVDHDNT(0.546)S(0.436)PLFR;KTVSLTPSPTTQVET(0.018)PDLVDHDNT(0.551)S(0.43)PLFR;KTVSLTPSPTTQVET(0.001)PDLVDHDNT(0.564)S(0.435)PLFR 87.674 8.27E-09 40103000 2305.78 2188.96 3914.84 2735.06 2129.08 2244.44 2191.92 3095.65 2662.93 3354.14 TRUE FALSE 2338.068034 2427.958055 2926.490224 2559.645493 2419.096742 2642.45992 2607.825377 2832.65521 2918.716325 2670.564427 0.875495835 0.909155395 1.0958321 0.958466108 0.905837252 0.989476192 0.976507195 1.060695328 1.092921143 1 11.38292897 -8.169168584 3.044010016 1.058750071 0.958819374 0.329939934 0.060525264 0.326515477 5.799319478 0.035234521 0.017919812 6.77E-09 8.169168584 -0.099930697 KVAEPELMGT(ph)PDGTCYPPPPVPR ddPTM_K562_Paclitaxel_30min_R1 1 KVAEPELMGTPDGTCYPPPPVPR 23 1 P27708;F8VPD4;H7BZB3 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 KVAEPELMGT(0.997)PDGT(0.003)CYPPPPVPR 103.21 9.52E-05 12262000 622.96 574.28 974.98 852.68 501.4 549.98 449.18 818.07 815.49 928.21 TRUE FALSE 631.683362 636.9818325 728.8342406 797.9929213 569.6991688 647.5112309 534.4095601 748.5698473 893.8214582 739.0402925 0.854734672 0.861904065 0.986190128 1.079769167 0.770863476 0.876151459 0.723112888 1.0128945 1.209435355 1 9.529509212 -8.517339433 24.40136584 1.106866841 0.884609395 0.435062671 0.10528325 176.3989367 777086.4282 0.068881652 0.027803095 3.04E-09 8.517339433 -0.222257446 KVDEGAGDSAAVASGGAQT(ph)LALAGSPAPSGHPK ddPTM_K562_Paclitaxel_30min_R1 1 KVDEGAGDSAAVASGGAQTLALAGSPAPSGHPK 33 1 A0A0A0MRN5;Q9NZT2-2;Q9NZT2 A0A0A0MRN5 OGFR Opioid growth factor receptor 1 KVDEGAGDS(0.001)AAVAS(0.102)GGAQT(0.681)LALAGS(0.214)PAPS(0.002)GHPK 45.791 0.011338 17444000 1764.3 1216.2 3905.5 2074 1616.5 1607.8 1351.5 2164.3 1839.2 2635.6 TRUE FALSE 1789.005643 1348.988829 2919.508222 1940.982923 1836.694668 1892.920755 1607.94007 1980.429206 2015.863378 2098.463273 0.85253131 0.642846051 1.391260099 0.924954441 0.875256999 0.902050934 0.766246467 0.94375214 0.960637912 1 11.0351175 -6.514620457 24.92554168 0.898004268 0.968247709 0.01531957 0.182353752 1808.984472 5459966.281 0.054447677 0.073865124 3.06E-07 6.514620457 0.070243441 KVEEEGS(ph)PGDPDHEASTQGR ddPTM_K562_Paclitaxel_30min_R1 4 KVEEEGSPGDPDHEASTQGR 20 1 A0A0A0MRN5;Q9NZT2-2;Q9NZT2 A0A0A0MRN5 OGFR Opioid growth factor receptor 1 KVEEEGS(0.994)PGDPDHEAS(0.004)T(0.001)QGR;KVEEEGS(1)PGDPDHEASTQGR;KVEEEGS(0.999)PGDPDHEAS(0.001)TQGR;KVEEEGS(0.981)PGDPDHEAS(0.013)T(0.006)QGR 113.62 6.86E-05 153146000 9025.3 8136.2 16432.4 10098.8 8385.4 7005.3 6459.4 9426.8 8882.9 13214.1 TRUE FALSE 9151.682045 9024.537831 12283.83739 9451.108169 9527.633446 8247.591596 7685.03743 8625.9345 9736.142235 10521.05917 0.869844176 0.857759441 1.167547601 0.89830387 0.905577404 0.783912671 0.730443324 0.819873205 0.925395636 1 13.36099233 -6.872673165 2.688996971 0.834623836 0.959922677 0.139949459 0.107124238 0.444480372 6.519689326 0.036566906 0.043014591 1.34E-07 6.872673165 0.125298841 KVEEEQEADEEDVS(ph)EEEAESK ddPTM_K562_Paclitaxel_30min_R1 1 KVEEEQEADEEDVSEEEAESK 21 1 Q9H3N1 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 1 KVEEEQEADEEDVS(0.983)EEEAES(0.017)K 120.38 4.41E-06 12895000 2490.4 2050.2 6133.3 3307.1 2378.5 1789.3 1736.1 3114.8 1435.9 4336.9 TRUE FALSE 2525.273284 2274.047769 4584.872559 3094.997408 2702.491968 2106.607232 2065.515912 2850.178298 1573.824611 3453.037399 0.731319413 0.658564477 1.327779583 0.89631158 0.782641963 0.61007368 0.598173629 0.82541194 0.455779776 1 11.75365024 -6.924417229 3.533746676 0.68156896 0.915428336 0.16732054 0.213514412 0.397482786 9.934928438 0.070219778 0.079737772 1.19E-07 6.924417229 0.233859376 KVIYSQPS(ph)AR ddPTM_K562_Paclitaxel_30min_R1 1 KVIYSQPSAR 10 1 A0A087WY82;Q9Y624-2;Q9Y624 A0A087WY82 F11R Junctional adhesion molecule A 1 KVIYSQPS(1)AR 76.073 0.026432 14213000 1366.8 1569 1738 1357.7 1200.7 1347.2 1325.5 2039.8 1530.9 2829 TRUE FALSE 1385.939417 1740.308726 1299.220405 1270.623199 1364.255668 1586.107004 1577.006705 1866.506258 1677.949785 2252.448247 0.615303556 0.772629839 0.576803665 0.564107611 0.60567681 0.704170232 0.700130051 0.828656667 0.744944878 1 11.13727824 -8.962488048 0.592577848 0.997794937 0.627668211 0.737254739 0.065305174 0.457338237 0.384994954 0.071770611 0.031963143 1.09E-09 8.962488048 -0.370126726 KVNVTVDYIRPAS(ph)PATETVPAFSER ddPTM_K562_Paclitaxel_30min_R1 1 KVNVTVDYIRPASPATETVPAFSER 25 2 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 1 KVNVT(0.002)VDY(0.009)IRPAS(0.867)PAT(0.083)ET(0.038)VPAFS(0.002)ER 49.871 0.015015 76674000 1581 1300.2 2342.9 1773.7 1691.1 1502.2 1320.2 2074.7 1931.2 2609.2 TRUE FALSE 1603.138878 1442.160233 1751.405918 1659.942821 1921.456451 1768.594078 1570.701058 1898.441285 2116.700389 2077.443608 0.771688277 0.694199461 0.843058224 0.79903147 0.924913891 0.851331931 0.756073981 0.913835292 1.018896677 1 11.0205936 -5.964159574 0.150855888 1.073527815 0.503492306 0.586485137 0.064962872 14.54994681 0.494701996 0.381652972 1.749388994 1.09E-06 5.964159574 -0.570035509 KVPT(ph)IILS(ph)VS(ph)Y(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 KVPTIILSVSYK 12 1 R4GN78;F8VR14;H0YI72;Q7Z6G8-9;Q7Z6G8-8;Q7Z6G8-10;Q7Z6G8-7;Q7Z6G8-2;Q7Z6G8-5;Q7Z6G8-4;Q7Z6G8-3;Q7Z6G8-6;Q7Z6G8 R4GN78 ANKS1B Ankyrin repeat and sterile alpha motif domain-containing protein 1B 4 KVPT(1)IILS(1)VS(1)Y(1)K 69.864 0.017548 4196700 157.32 0 56.785 126.2 0 119.16 0 167.46 0 188.58 TRUE FALSE 159.5229654 0 42.44892444 118.1060969 0 140.2913529 0 153.2332277 0 150.1472925 1.06244317 0 0.282715217 0.786601576 0 0.934358193 0 1.02055272 0 1 7.23023465 -11.61715141 2.938946732 1.041252512 0.44953648 0.124407071 0.434343258 209246881.6 215560126.9 66266056.3 0.100112018 2.41E-12 11.61715141 -0.591716032 KVQVAALQAS(ph)PPLDQDDR ddPTM_K562_Paclitaxel_30min_R1 3 KVQVAALQASPPLDQDDR 18 1 Q9UDY2-7;Q9UDY2-4;A0A3B3IU51;A0A1B0GTW1;A0A3B3ITE1;A0A2R8YDH4;Q9UDY2-2;Q9UDY2-6;Q9UDY2-3;Q9UDY2;Q9UDY2-5;A0A3B3ISF1;A0A3B3ISZ5;A0A3B3IRI3;A0A3B3IRV6;B1AN86;A0A3B3IU26;U3KQJ2 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 KVQVAALQAS(1)PPLDQDDR;KVQVAALQAS(1)PPLDQDDR;KVQVAALQAS(1)PPLDQDDR 94.384 0.0010135 134521000 8045.1 7612.1 11644.8 8778 7124.5 6370.8 7548.4 10784.9 5745.2 12764.6 TRUE FALSE 8157.756221 8443.21482 8704.926219 8215.018369 8094.977519 7500.57193 8980.669495 9868.655428 6297.05213 10163.16751 0.802678516 0.830766079 0.856517046 0.808312798 0.796501436 0.738015183 0.883648674 0.971021624 0.619595428 1 13.31106249 -11.06586723 4.669879173 1.000007911 0.817822153 0.293471647 0.087123686 124192311.3 5.256084209 10563.91094 0.020280325 8.59E-12 11.06586723 -0.182185758 KVQVAALQAS(ph)PPLDQDDRAFEVMDEFDGR ddPTM_K562_Paclitaxel_30min_R1 2 KVQVAALQASPPLDQDDRAFEVMDEFDGR 29 2 Q9UDY2-7;Q9UDY2-4;A0A3B3IU51;A0A1B0GTW1;A0A3B3ITE1;A0A2R8YDH4;Q9UDY2-2;Q9UDY2-6;Q9UDY2-3;Q9UDY2;Q9UDY2-5;A0A3B3ISF1;A0A3B3ISZ5;A0A3B3IRI3;A0A3B3IRV6;B1AN86;A0A3B3IU26;U3KQJ2 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 KVQVAALQAS(1)PPLDQDDRAFEVMDEFDGR;KVQVAALQAS(1)PPLDQDDRAFEVMDEFDGR 80.944 4.64E-06 158944000 7872.4 6751.5 11473.1 7301.4 6136.7 6405.4 6552.9 9378.8 10481.9 10783.4 TRUE FALSE 7982.637888 7488.651602 8576.574007 6833.120884 6972.622435 7541.307754 7796.278567 8582.012399 11488.73333 8585.737161 0.92975568 0.872219993 0.998932747 0.795868864 0.812116922 0.878352972 0.908049993 0.999566169 1.338118453 1 13.06772629 -8.543296885 5.400753478 1.173602127 0.886391283 0.59507138 0.093088342 0.109845783 9.650854604 0.06097225 0.023228463 2.86E-09 8.543296885 -0.287210844 KVTGTEGSSSTLVDYTSTSSTGGS(ph)PVR ddPTM_K562_Paclitaxel_30min_R1 2 KVTGTEGSSSTLVDYTSTSSTGGSPVR 27 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 KVTGTEGSSSTLVDYTSTS(0.009)S(0.026)T(0.026)GGS(0.94)PVR;KVTGTEGSSSTLVDYTS(0.001)T(0.004)S(0.008)S(0.005)T(0.025)GGS(0.957)PVR 162.15 3.61E-35 36323000 8160.7 7407 13375.3 10347.3 8234.2 7040.1 7123.9 9796.5 6732.3 10866.1 TRUE FALSE 8274.974978 8215.721309 9998.540091 9683.670491 9355.837446 8288.562887 8475.622836 8964.226177 7378.967496 8651.582855 0.956469483 0.949620601 1.15568911 1.11929466 1.08140182 0.958040052 0.979661523 1.036137124 0.852903754 1 13.07874839 -7.267406923 24.64654447 0.968501621 1.056223967 0.255475132 0.074151165 632.890552 2613887.819 0.027545263 0.024926267 5.40E-08 7.267406923 0.087722345 KVTHES(ph)PT(ph)T(ph)GAK ddPTM_K562_Paclitaxel_30min_R1 1 KVTHESPTTGAK 12 1 Q9BX70-2;Q9BX70 Q9BX70-2 BTBD2 BTB/POZ domain-containing protein 2 3 KVTHES(1)PT(1)T(1)GAK 77.633 0.016821 9315900 124.09 214.24 0 0 0 0 0 0 0 0 TRUE FALSE 125.8276429 237.6314477 0 0 0 0 0 0 0 0 0 KVTPS(ph)S(ph)DEY(ph)ELK ddPTM_K562_Paclitaxel_30min_R1 1 KVTPSSDEYELK 12 1 A0A494C1Q3;Q9UFE4 A0A494C1Q3 CCDC39 Coiled-coil domain-containing protein 39 3 KVT(0.005)PS(0.996)S(1)DEY(1)ELK 54.066 0.029287 0 402.34 594.84 685.15 618.02 496.49 573.48 464.19 526.87 392.95 591.37 TRUE FALSE 407.9740013 659.7866428 512.1754087 578.3829634 564.1203436 675.1786259 552.2676293 482.1091049 430.6946032 470.8484694 0.8664656 1.401271716 1.087771209 1.228384504 1.198093188 1.433961603 1.17292009 1.023915625 0.914720194 1 8.87911903 -8.305373698 3.425479888 0.96354288 1.213761357 0.311944301 0.150180669 0.279417765 6.709464889 0.086889603 0.039294282 4.95E-09 8.305373698 0.250218477 KVTSPSSSSSSSSSDSES(ph)DDEADVSEVTPR ddPTM_K562_Paclitaxel_30min_R1 1 KVTSPSSSSSSSSSDSESDDEADVSEVTPR 30 1 P56181-2 P56181-2 1 KVT(0.001)SPSS(0.001)S(0.001)S(0.002)S(0.006)S(0.023)S(0.071)S(0.086)S(0.243)DS(0.026)ES(0.539)DDEADVS(0.001)EVTPR 80.695 5.76E-06 21310000 4479 4084.6 4301.7 4176.5 3815.6 3072.4 3591.1 4074.2 4710 4208.6 TRUE FALSE 4541.719819 4530.570441 3215.682632 3908.637983 4335.349319 3617.247001 4272.492478 3728.07128 5162.416545 3350.88501 1.355379193 1.352051899 0.959651741 1.166449452 1.293792328 1.079490042 1.275034048 1.112563179 1.540612862 1 11.71032646 KVVDYSQFQES(ph)DDADEDYGR ddPTM_K562_Paclitaxel_30min_R1 7 KVVDYSQFQESDDADEDYGR 20 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDYSQFQES(1)DDADEDYGR;KVVDY(0.001)SQFQES(0.999)DDADEDY(0.001)GR 162.82 4.99E-13 1295997000 18856.38 15910.93 29992.7 21295.17 15700.66 14362.69 14376.5 19654.54 13475.69 23912.51 TRUE FALSE 19120.4275 17648.13914 22420.67194 19929.39311 17839.35571 16909.71141 17104.36582 17984.76415 14770.09024 19039.12734 1.004270162 0.926940549 1.177610273 1.046759799 0.936983896 0.888155802 0.898379717 0.944621244 0.77577559 1 14.21667973 -6.86792627 3.910315428 0.899077107 1.040838589 0.410933097 0.077968193 0.227206183 6.486730697 0.025009773 0.028981098 1.36E-07 6.86792627 0.141761482 KVVDYSQFQES(ph)DDADEDYGRDSGPPTK ddPTM_K562_Paclitaxel_30min_R1 2 KVVDYSQFQESDDADEDYGRDSGPPTK 27 2 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 KVVDYSQFQES(0.998)DDADEDY(0.001)GRDSGPPTK;KVVDYSQFQES(0.997)DDADEDY(0.001)GRDS(0.001)GPPTK 94.072 1.17E-05 257752000 6624.9 4562.4 13874.1 6596.7 4648.2 3527.01 4283.1 6237.2 6473.7 7627.2 TRUE FALSE 6717.66904 5060.538261 10371.41186 6173.617188 5281.363535 4152.475702 5095.795866 5707.310929 7095.52781 6072.772453 1.106194756 0.833315969 1.707854517 1.016606045 0.869679142 0.683785822 0.839121819 0.939819658 1.168416545 1 12.5681396 -6.513751453 24.62020436 0.902340014 1.208322667 0.248920432 0.231335325 496.5774899 1339482.744 0.068432441 0.093481588 3.06E-07 6.513751453 0.305982653 KWDGS(ph)EEDEDNSK ddPTM_K562_Paclitaxel_30min_R1 2 KWDGSEEDEDNSK 13 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 KWDGS(1)EEDEDNSK;KWDGS(1)EEDEDNSK 102.64 0.014255 84480000 6782.7 4297.4 14697.5 6879 5060.7 3652 3673.5 6035.6 5577 8442.4 TRUE FALSE 6877.678726 4766.604665 10986.93435 6437.811729 5750.053018 4299.630923 4370.527448 5522.838107 6112.695769 6721.834246 1.023184815 0.709122613 1.634514323 0.957746278 0.855429159 0.639651435 0.650198635 0.821626643 0.909379129 1 12.71463925 -6.668504693 3.820274323 0.785395189 1.108371754 0.247375352 0.235807909 0.308210378 8.570231831 0.073058927 0.094964053 2.15E-07 6.668504693 0.322976565 KWPQGAVPQLPPS(ph)APATSEMTTTPERPR ddPTM_K562_Paclitaxel_30min_R1 1 KWPQGAVPQLPPSAPATSEMTTTPERPR 28 2 P27708;F8VPD4;H7BZB3 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 KWPQGAVPQLPPS(0.27)APAT(0.173)S(0.139)EMT(0.139)T(0.139)T(0.139)PERPR 72.033 0.00013863 38679000 3104.8 2522.3 3795.5 2926.8 2283.1 2462.1 2921.3 3978.9 2665.7 4676.6 TRUE FALSE 3148.276779 2797.693244 2837.279083 2739.088148 2594.096873 2898.718865 3475.601425 3640.867609 2921.752396 3723.506353 0.845514008 0.751359869 0.761991202 0.735620646 0.6966812 0.77849172 0.933421645 0.977806203 0.784677699 1 11.8624461 -7.718516242 5.391803796 0.922506185 0.7555671 0.610481878 0.06357477 0.126520494 8.580180045 0.024614397 0.018425886 1.91E-08 7.718516242 -0.166939085 KWSNS(ph)QPADLAHMGR ddPTM_K562_Paclitaxel_30min_R1 1 KWSNSQPADLAHMGR 15 1 Q9BRG2;M0QZQ6;Q9BRG2-2 Q9BRG2 SH2D3A SH2 domain-containing protein 3A 1 KWS(0.001)NS(0.999)QPADLAHMGR 98.188 0.0036537 14695000 581.22 582.08 1105.3 459.5 564.85 722.21 626.63 926.67 1020.5 1229.6 TRUE FALSE 589.3588732 645.6334629 826.2533448 430.0297266 641.792133 850.2838032 745.5297713 847.9435994 1118.523585 979.0068451 0.601996683 0.659477986 0.843970958 0.439250991 0.655554286 0.868516709 0.761516403 0.866126324 1.142508441 1 9.935175137 -8.144335014 0.980704741 1.060551115 0.649530741 0.635381481 0.117267962 0.37514271 0.649981784 0.103097336 0.044581786 7.17E-09 8.144335014 -0.411020375 KY(ph)GYLNEQVPKAPT(ph)ST(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 KYGYLNEQVPKAPTSTR 17 2 A0A087X1Y9 A0A087X1Y9 MMP28 3 KY(0.946)GY(0.055)LNEQVPKAPT(0.504)S(0.504)T(0.992)R 55.975 0.028341 137380000 912.57 1143.6 1053.1 1090.2 1202.4 1183.4 1034.1 1155.9 1307.9 1249.3 TRUE FALSE 925.3487955 1268.462115 787.2318804 1020.279452 1366.187237 1393.259374 1230.315077 1057.69908 1433.529639 994.6919742 0.930286782 1.275231075 0.791432826 1.025724021 1.373477692 1.400694296 1.23688047 1.063343334 1.441179457 1 9.958106026 -6.707399959 9.347270407 1.262253406 1.008867879 0.329076075 0.172392384 0.41114905 67.05950854 0.049972428 0.064414447 1.96E-07 6.707399959 -0.253385527 KY(ph)IGPCGGR ddPTM_K562_Paclitaxel_30min_R1 1 KYIGPCGGR 9 1 A0A2R8Y548;P53420 A0A2R8Y548 COL4A4 Collagen alpha-4(IV) chain 1 KY(1)IGPCGGR 55.37 0.030163 26378000 2609.1 2669.8 3671 2639.7 2581.2 2472.6 2394.2 3087.8 2858.4 3611.1 TRUE FALSE 2645.63545 2961.297793 2744.210648 2470.401457 2932.80314 2911.080893 2848.486951 2825.472117 3132.962092 2875.155838 0.920171149 1.029960795 0.954456316 0.859223498 1.020050149 1.012494994 0.990724368 0.982719642 1.08966688 1 11.48942444 KYEEIDNAPEER ddPTM_K562_Paclitaxel_30min_R1 2 KYEEIDNAPEER 12 1 P49411 P49411 TUFM "Elongation factor Tu, mitochondrial" 0 ; 99.669 0.015031 19182300 3033.7 2360.62 4173.8 2681.05 2256.02 2252.92 2048.89 2754.45 2413.11 3722.6 FALSE TRUE 3076.18116 2618.360475 3120.072569 2509.099453 2563.328119 2652.443729 2437.656182 2520.44228 2644.899998 2963.932077 1.037871679 0.883407719 1.052680186 0.846544181 0.864840372 0.894907056 0.822439961 0.850371134 0.892361879 1 11.53329667 -6.277263029 24.98097754 0.872789675 0.980528651 0.385922336 0.062266337 745.5365863 1176985.212 0.01633965 0.024323228 5.28E-07 6.277263029 0.107738976 KYIEIDS(ph)DEEPRGELLSLR ddPTM_K562_Paclitaxel_30min_R1 1 KYIEIDSDEEPRGELLSLR 19 2 E7EW05;Q9NVU7-2;Q9NVU7 E7EW05 SDAD1 Protein SDA1 homolog 1 KYIEIDS(1)DEEPRGELLSLR 93.416 0.008301 59479000 632.94 506.84 952.26 639.79 646.45 588.44 751.58 659.93 786.07 1048.8 TRUE FALSE 641.8031128 562.1785052 711.8501856 598.756733 734.5074345 692.7915719 894.1883815 603.8648273 861.5755358 835.0539843 0.768576792 0.673224146 0.852460079 0.717027575 0.879592755 0.829636868 1.070815059 0.723144657 1.031760284 1 9.705725657 -7.031572767 1.154718288 0.93469272 0.74447402 0.404231224 0.10269869 0.499449898 1.401076661 0.045553421 0.050965216 9.30E-08 7.031572767 -0.1902187 KYS(ph)SCSTIFLDDSTVSQPNLK ddPTM_K562_Paclitaxel_30min_R1 1 KYSSCSTIFLDDSTVSQPNLK 21 1 Q8ND76-3;Q8ND76;R4GNF3;Q8ND76-2 Q8ND76-3 CCNY Cyclin-Y 1 KY(0.005)S(0.3)S(0.3)CS(0.096)T(0.3)IFLDDSTVSQPNLK 85.777 0.00075231 11069000 2713.6 2037.9 4753.1 2559.2 1682.3 1415.9 1361.4 2813.9 2549.2 3753.8 TRUE FALSE 2751.598772 2260.404814 3553.121119 2395.064367 1911.457742 1666.989985 1619.718543 2574.841631 2794.06205 2988.773499 0.920644797 0.756298466 1.188822479 0.801353588 0.639545868 0.557750524 0.541934189 0.861504437 0.93485239 1 11.54533785 -5.248818589 21.83499822 0.794909282 0.920645278 0.024904346 0.19161409 1525.239279 2638493.048 0.051743893 0.76368985 5.64E-06 5.248818589 0.125735996 KYSDVEVPASVTGYSFASDGDSGT(ph)CSPLR ddPTM_K562_Paclitaxel_30min_R1 1 KYSDVEVPASVTGYSFASDGDSGTCSPLR 29 1 E7EV99;E7ENY0;P35611-5;P35611-2;P35611-6;P35611-4;P35611;P35611-3;H0Y9H2 E7EV99 ADD1 Alpha-adducin 1 KYSDVEVPASVTGYSFAS(0.001)DGDS(0.1)GT(0.45)CS(0.45)PLR 125.96 9.27E-15 15152000 1268.4 1333.7 1574.2 1215.5 986.32 1046.5 1163.5 1522.1 992.9 1888.3 TRUE FALSE 1286.161513 1479.317876 1176.773741 1137.54327 1120.673483 1232.082081 1384.268051 1392.788104 1088.272481 1503.463423 0.855465782 0.98394005 0.782708593 0.756615194 0.745394577 0.81949588 0.920719473 0.926386424 0.723843669 1 10.55407405 -10.04335199 9.914158692 0.999999997 0.837616743 0.264864949 0.082382632 0 0 0.084708179 0.020544751 9.05E-11 10.04335199 -0.162383255 KYTELPHGAISEDQAVGPADIPCDSTGQT(ph)ST ddPTM_K562_Paclitaxel_30min_R1 1 KYTELPHGAISEDQAVGPADIPCDSTGQTST 31 1 Q9H773;H3BPN2;H3BSA6 Q9H773 DCTPP1 dCTP pyrophosphatase 1 1 KYTELPHGAISEDQAVGPADIPCDS(0.045)T(0.045)GQT(0.332)S(0.302)T(0.275) 45.43 0.02819 25128000 1170 1196.9 1877.7 1313.1 1048.6 875.13 790.09 1570.4 1422.3 1686.7 TRUE FALSE 1186.38361 1327.58159 1403.651412 1228.883643 1191.437073 1030.322018 940.005453 1436.984718 1558.91827 1342.949614 0.883416323 0.988556514 1.045200354 0.915063105 0.887179281 0.767208246 0.699955861 1.070021319 1.160816648 1 10.39118946 -8.485215879 24.17877301 1.092078602 0.890461509 0.440347798 0.099458304 359.5496185 230824.4739 0.060642107 0.029116745 3.27E-09 8.485215879 -0.201617093 LAAAEETAVS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 LAAAEETAVSPR 12 0 Q9BUH6 Q9BUH6 C9orf142 Protein PAXX 1 LAAAEETAVS(1)PR;LAAAEETAVS(1)PR;LAAAEETAVS(1)PR;LAAAEETAVS(1)PR 163.33 0.00099108 259397000 3517.21 3341.8 4191.42 3665.62 2822.69 3406.71 2760.15 3895.6 2502.56 4052.86 TRUE FALSE 3566.461792 3706.669025 3133.244182 3430.52354 3207.188167 4010.842186 3283.874054 3564.644464 2742.94207 3226.884907 1.105233652 1.148683369 0.970981077 1.063106878 0.993896051 1.242945534 1.017660731 1.104670469 0.850027859 1 11.65592641 -8.749855328 24.99712168 0.925013918 1.079293578 0.366235004 0.082002795 198.9981401 429422.4765 0.054681395 0.020280896 1.78E-09 8.749855328 0.154279661 LAAPSVSHVS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 LAAPSVSHVSPR 12 0 A0A0U1RQJ8;Q8WXE1-5;Q8WXE1-3;Q8WXE1-2;Q8WXE1;A0A0U1RRM7;A0A0U1RQW3 A0A0U1RQJ8 ATRIP ATR-interacting protein 1 LAAPSVSHVS(1)PR;LAAPS(0.001)VS(0.001)HVS(0.998)PR;LAAPSVSHVS(1)PR 140.49 8.37E-05 312260000 4722 4846.2 6367 5329.4 4395.8 4583.6 4463.9 5523.2 5025.9 6145.6 TRUE FALSE 4788.122569 5375.324505 4759.572104 4987.596138 4994.582382 5396.437103 5310.901722 5053.969685 5508.660151 4893.123347 0.978541154 1.0985467 0.97270634 1.019307257 1.020735025 1.102861449 1.085380716 1.032871916 1.125796298 1 12.25653994 -7.234748726 22.26379947 1.072436476 1.020003838 0.23855627 0.045693664 273.2843643 227957.1246 0.014252559 0.014245079 5.82E-08 7.234748726 -0.052432639 LAAQLGAPTS(ph)PIPDSAIVNTR ddPTM_K562_Paclitaxel_30min_R1 2 LAAQLGAPTSPIPDSAIVNTR 21 0 B8ZZS4;Q9H8Y5 B8ZZS4 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 1 LAAQLGAPT(0.158)S(0.791)PIPDS(0.029)AIVNT(0.022)R;LAAQLGAPT(0.169)S(0.831)PIPDSAIVNTR 124.94 2.51E-07 29314000 1373.8 999.69 1570.78 1183.54 1084.51 1253.35 1339.74 1231.24 1075.38 1721.22 TRUE FALSE 1393.037439 1108.839535 1174.217162 1107.633042 1232.238623 1475.614025 1593.948671 1126.638477 1178.675054 1370.434419 1.016493324 0.809115357 0.856821126 0.808234985 0.899159132 1.076749098 1.163097372 0.822103167 0.86007403 1 10.42041758 -7.017415598 23.17481149 0.984843348 0.8653328 0.204029727 0.105756868 475.9915402 633398.9774 0.036854822 0.037733811 9.61E-08 7.017415598 -0.119510548 LADLVERDR ddPTM_K562_Paclitaxel_30min_R1 2 LADLVERDR 9 1 Q9UED3;H0YKL3;A0A0U1RQK9;H0YMG7;O94788-4;O94788-2;O94788-3;O94788 Q9UED3 RALDH2;ALDH1A2 Retinal dehydrogenase 2 0 ; 117.81 0.026459 21150000 6917.7 6618 8384.6 7442.6 6225.8 6252.4 6807.3 8233.4 8100.4 8353.9 FALSE TRUE 7014.569143 7340.575621 6267.804031 6965.264948 7073.859364 7361.175352 8098.949639 7533.921279 8878.479614 6651.370594 1.054605069 1.103618497 0.942332703 1.047192432 1.063519054 1.106715563 1.217636203 1.132687041 1.334834601 1 12.69943594 -7.435168953 2.239921267 1.182535265 1.037849029 0.324304777 0.086662441 0.335117472 3.321359696 0.034440233 0.028292178 3.67E-08 7.435168953 -0.144686236 LAEDEGDS(ph)EPEAVGQSR ddPTM_K562_Paclitaxel_30min_R1 2 LAEDEGDSEPEAVGQSR 17 0 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 LAEDEGDS(1)EPEAVGQSR;LAEDEGDS(1)EPEAVGQSR 289.58 5.96E-154 1452720000 4191.7 3993.1 6537.2 5331.1 4301.7 4124.6 3958.5 5018.4 3783.2 5931.3 TRUE FALSE 4250.396733 4429.080162 4886.803009 4989.187107 4887.664368 4856.039898 4709.60471 4592.055596 4146.593264 4722.497804 0.900031489 0.937868125 1.034792013 1.056472086 1.034974408 1.028277852 0.997269857 0.972378556 0.878050861 1 12.20533441 -10.8610491 14.24196608 1 0.987717019 0.000406591 0.057748257 0 0 0.060515111 0.01467707 1.38E-11 10.8610491 -0.012282981 LAEIGAPIQGNREELVER ddPTM_K562_Paclitaxel_30min_R1 1 LAEIGAPIQGNREELVER 18 1 E9PPJ0;Q13435;E9PJ04;H0YCG1;E9PJT3 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 0 91.616 0.016727 6578600 642.26 635.71 806.78 650.28 595.56 588.38 564.75 548.81 664.99 886.19 FALSE TRUE 651.2536215 705.1189676 603.0984109 608.5739513 676.6853549 692.7209317 671.9083643 502.1851649 728.8652608 705.5839916 0.922999429 0.999340938 0.8547507 0.862510996 0.959042953 0.981769626 0.952272688 0.711729817 1.032995745 1 9.462674019 LAELEEFINGPNNAHIQQVGDR ddPTM_K562_Paclitaxel_30min_R1 2 LAELEEFINGPNNAHIQQVGDR 22 0 J3KS13;A0A087WVQ6;Q00610-2;Q00610 J3KS13 CLTC Clathrin heavy chain;Clathrin heavy chain 1 0 ; 172.3 1.26E-19 26186000 2320 1967.51 2591.9 2258.3 1782.37 1710.48 1630.44 1958.78 1806.49 2561.59 FALSE TRUE 2352.487158 2182.329395 1937.542789 2113.462746 2025.15897 2013.809612 1939.807479 1792.369413 1980.011436 2039.536552 1.153442019 1.070012397 0.949991696 1.036246565 0.992950564 0.987385889 0.951102091 0.878812106 0.970814391 1 10.99402565 -2 0.518026644 0.952892 8.279679116 0.676638044 0.040366251 67.83492056 0.686363343 0.022155012 545.450397 0.01 2 7.326787116 LAELSDYRR ddPTM_K562_Paclitaxel_30min_R1 1 LAELSDYRR 9 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 0 138.06 0.0013955 10155000 1663.3 1618.9 2232.4 2083.9 1491 1580.5 1798.3 2208.1 1876.2 2486 FALSE TRUE 1686.591332 1795.656977 1668.80301 1950.247981 1694.099443 1860.779484 2139.518037 2020.508122 2056.417393 1979.351835 0.852092741 0.907194438 0.843105799 0.98529627 0.855885958 0.940095364 1.08091851 1.02079281 1.038934744 1 10.95081236 -7.590059979 5.006716102 1.035978517 0.892866392 0.726326748 0.042353961 0.104715694 5.06160218 0.015787807 0.012167701 2.57E-08 7.590059979 -0.143112125 LAFPS(ph)PFGHLSEGFSHSR ddPTM_K562_Paclitaxel_30min_R1 2 LAFPSPFGHLSEGFSHSR 18 0 E7EMC7;Q13501;Q13501-2;C9JRJ8;E9PFW8 E7EMC7 SQSTM1 Sequestosome-1 1 LAFPS(1)PFGHLSEGFSHSR;LAFPS(1)PFGHLSEGFSHSR 113.11 0.00026963 9178800 6021 6232.8 6609.1 6037.6 5353.7 5644.1 5920.2 6526.1 5765.8 8156.5 TRUE FALSE 6105.312576 6913.318182 4940.550965 5650.375359 6082.964579 6645.001888 7043.527044 5971.66707 6319.630852 6494.200823 0.940117613 1.064537173 0.760763503 0.870064772 0.936676389 1.023220881 1.084587194 0.919538406 0.973119099 1 12.66493628 -7.095905186 4.799482918 0.999757659 0.908718887 0.22896029 0.079758302 0.378894839 14.28629136 0.028342153 0.028655536 8.02E-08 7.095905186 -0.091038772 LAGGDWFTSR ddPTM_K562_Paclitaxel_30min_R1 1 LAGGDWFTSR 10 0 C9J9C1;P30153 C9J9C1 PPP2R1A Serine/threonine-protein phosphatase 2A 65 kDa regulatory subunit A alpha isoform 0 114.89 0.027133 6397800 627.23 339.39 576.75 651.02 361.71 348.93 324.75 559.98 649.41 656.91 FALSE TRUE 636.0131552 376.4457479 431.1423293 609.2664911 410.9810258 410.8078363 386.3696172 512.4062037 711.7887321 523.0313814 1.216013375 0.719738359 0.824314457 1.164875594 0.785767433 0.785436306 0.738712113 0.979685392 1.360891062 1 9.030753699 -8.553623594 10.08951039 1.17787892 0.882242593 0.286403132 0.180406652 0.501911302 156.9729767 0.117937363 0.044719362 2.79E-09 8.553623594 -0.295636327 LAGS(ph)PIRTSEDVSQR ddPTM_K562_Paclitaxel_30min_R1 1 LAGSPIRTSEDVSQR 15 1 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6;F8W8U2 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 LAGS(0.998)PIRT(0.001)SEDVSQR 146.1 1.63E-05 15069000 1488.5 1287.5 1702 1635.9 1367.5 1177 1288.7 1267.9 1776.1 1600.4 TRUE FALSE 1509.343592 1428.073604 1272.30905 1530.980696 1553.776652 1385.724424 1533.224098 1160.183981 1946.702341 1274.237602 1.184507183 1.120727879 0.998486506 1.201487614 1.219377493 1.087492962 1.203248198 0.910492658 1.527738891 1 10.3154186 LAHYIDR ddPTM_K562_Paclitaxel_30min_R1 1 LAHYIDR 7 0 Q03252 Q03252 LMNB2 Lamin-B2 0 91.626 0.030799 0 2543.9 2207.9 2330.6 2761.1 2613.5 2026.1 2157.6 2641.3 2347.7 2802.7 FALSE TRUE 2579.522449 2448.965989 1742.211206 2584.015404 2969.502947 2385.400387 2566.993337 2416.905079 2573.207075 2231.508202 1.155954725 1.097448796 0.780732602 1.157968141 1.330715677 1.068963307 1.150340086 1.083081423 1.153124632 1 11.12380339 -5.265060379 8.999146683 1.094947132 1.156200266 0.020424489 0.13212798 0.49767087 792.1073439 0.034479313 0.18171828 5.43E-06 5.265060379 0.061253134 LAIQGPEDS(ph)PSR ddPTM_K562_Paclitaxel_30min_R1 3 LAIQGPEDSPSR 12 0 Q15773 Q15773 MLF2 Myeloid leukemia factor 2 1 LAIQGPEDS(0.949)PS(0.051)R;LAIQGPEDS(0.5)PS(0.5)R;LAIQGPEDS(0.899)PS(0.101)R 168.93 0.00012148 489810000 5707.9 5757.9 7878.4 6167.1 4899.6 5248.4 5081.2 6618.9 4794.8 6867.8 TRUE FALSE 5787.82821 6386.566994 5889.400481 5771.569809 5567.008471 6179.130049 6045.331174 6056.583131 5255.361964 5468.13859 1.058464067 1.167959972 1.077039359 1.05549077 1.018081085 1.130024404 1.105555588 1.107613319 0.961087924 1 12.41683409 -8.760700706 24.99999896 0.980543925 1.090494568 0.537272975 0.040640424 14.9058531 504631.8687 0.03266432 0.010674052 1.73E-09 8.760700706 0.109950643 LAIQGPEDSPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 LAIQGPEDSPSR 12 0 Q15773 Q15773 MLF2 Myeloid leukemia factor 2 1 LAIQGPEDS(0.226)PS(0.774)R;LAIQGPEDS(0.229)PS(0.771)R 193.98 0.00010078 433800000 3839.4 3049.5 3988.2 3983.7 3248.9 3730 3274.4 4229.2 3351.3 4283.1 TRUE FALSE 3893.163446 3382.454723 2981.329585 3728.203312 3691.455184 4391.463128 3895.700306 3869.903062 3673.207339 3410.201869 1.141622577 0.991863489 0.874238447 1.093250035 1.082474096 1.287742866 1.14236648 1.134801754 1.077123138 1 11.73564143 -6.496288992 14.36489749 1.1324677 0.99853724 0.246076778 0.091264468 4.861190263 2624.339988 0.026227654 0.038337613 3.19E-07 6.496288992 -0.133930461 LALAGEGEACPLLGS(ph)PGAGR ddPTM_K562_Paclitaxel_30min_R1 2 LALAGEGEACPLLGSPGAGR 20 0 Q96F46-2;Q96F46 Q96F46-2 IL17RA Interleukin-17 receptor A 1 LALAGEGEACPLLGS(1)PGAGR;LALAGEGEACPLLGS(1)PGAGR 149.74 3.98E-13 56733000 3396.6 3447.7 4153.6 3829.9 3207.5 2816.8 3336 4301.6 4295 4546.4 TRUE FALSE 3444.162879 3824.131545 3104.972309 3584.267356 3644.415803 3316.31993 3968.988585 3936.15223 4707.553941 3619.841184 0.951467952 1.056436277 0.857764789 0.990172544 1.006788867 0.916150671 1.09645379 1.087382576 1.30048632 1 11.82171069 -7.903498653 4.273381881 1.137085213 0.966049283 0.450497842 0.085570445 0.192648814 6.365188179 0.036168175 0.023684979 1.25E-08 7.903498653 -0.171035929 LALDGETLGEEEQEDEQPPWAS(ph)PSPTSR ddPTM_K562_Paclitaxel_30min_R1 1 LALDGETLGEEEQEDEQPPWASPSPTSR 28 0 A0A0G2JMS7;A0A0G2JNZ2;A0A0G2JPP5;A0A669KB89;Q14160-2;Q14160;Q14160-3;H0YCG0 A0A0G2JMS7 SCRIB Protein scribble homolog 1 LALDGETLGEEEQEDEQPPWAS(0.263)PS(0.263)PT(0.263)S(0.21)R 55.484 0.016577 0 177.99 231.49 358.62 251.1 0 199.02 165.58 290.2 183.71 290.57 TRUE FALSE 180.4824091 256.764861 268.0819456 234.9955699 0 234.3134026 196.9979406 265.5456986 201.3561663 231.3516745 0.780121473 1.109846564 1.158763801 1.01575046 0 1.012801844 0.851508601 1.147801066 0.8703467 1 7.853943731 -9.80809634 19.57692295 0.999975923 0.886391063 0.011794842 0.31994133 0 0 0.3214373 0.077959996 1.56E-10 9.80809634 -0.113584861 LALS(ph)PLSLGK ddPTM_K562_Paclitaxel_30min_R1 2 LALSPLSLGK 10 0 P49454 P49454 CENPF Centromere protein F 1 LALS(0.791)PLS(0.209)LGK;LALS(0.528)PLS(0.472)LGK 125.72 0.00167 17969400 8278.3 7058.9 14345.8 10123.2 7582 6613.8 6544.9 9151.5 5387.5 11723.1 TRUE FALSE 8394.221741 7829.614574 10724.02536 9473.943262 8614.796764 7786.664568 7786.760608 8374.022953 5904.993447 9333.925785 0.899323814 0.838834029 1.148929787 1.01500092 0.922955353 0.834232535 0.834242824 0.897159796 0.632637711 1 13.18826828 -7.114149552 3.260826135 0.832543157 0.97763392 0.241431674 0.113407193 0.369963195 7.397223936 0.039656813 0.04024232 7.69E-08 7.114149552 0.145090763 LAPGGHVGR ddPTM_K562_Paclitaxel_30min_R1 1 LAPGGHVGR 9 0 H3BM89;P36578 H3BM89 RPL4 60S ribosomal protein L4 0 110.12 0.0052673 0 1320 1097.3 1695.8 1550 1337.5 1044.5 1393.8 1565.8 1083.4 1949 FALSE TRUE 1338.484073 1217.106925 1267.674317 1450.589938 1519.690144 1229.727409 1658.266274 1432.775517 1187.465411 1551.79273 0.862540497 0.784323126 0.81690956 0.934783305 0.979312581 0.792455968 1.068613251 0.923303408 0.765221661 1 10.59972016 -6.257553532 23.38987282 0.923114824 0.817564248 0.224524029 0.086894046 202.4299197 1218459.615 0.023484165 0.038726132 5.53E-07 6.257553532 -0.105550576 LAPPS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 3 LAPPSPAR 8 0 O75145-2;O75145 O75145-2 PPFIA3 Liprin-alpha-3 1 LAPPS(1)PAR;LAPPS(1)PAR;LAPPS(1)PAR 94.409 0.015355 178059000 1794.91 1682.52 2010.63 1791.89 1503.79 1545.09 1371.27 1575.46 1212.9 1696.52 TRUE FALSE 1820.044278 1866.223224 1503.021589 1676.966196 1708.631657 1819.090017 1631.461324 1441.614839 1329.404464 1350.768293 1.347414125 1.381601296 1.112716072 1.241490642 1.264933199 1.346707668 1.207802502 1.067255463 0.984183943 1 10.3995645 -8.278591834 2.386021534 0.997125025 1.276895485 0.738764546 0.071159802 0.171288078 1.867725647 0.051345478 0.021681622 5.27E-09 8.278591834 0.27977046 LAPWQAS(ph)PPHPCR ddPTM_K562_Paclitaxel_30min_R1 1 LAPWQASPPHPCR 13 0 Q8IY92-2;Q8IY92 Q8IY92-2 SLX4 Structure-specific endonuclease subunit SLX4 1 LAPWQAS(1)PPHPCR 94.487 0.0091368 6705500 727.5 781.33 954.78 572.48 752.57 740.91 657.77 1102 877.3 937.86 TRUE FALSE 737.6872445 866.6382517 713.7339804 535.7636951 855.0827751 872.2999856 782.5784237 1008.378222 961.5685849 746.7236172 0.987898638 1.160587708 0.95582082 0.717485938 1.145112804 1.168169809 1.048016168 1.350403547 1.287716851 1 9.544430551 -6.972444032 24.99968387 1.181923515 0.965274068 0.358113612 0.138181717 251.3835371 228062.373 0.044929384 0.050944211 1.07E-07 6.972444032 -0.216649447 LAREGGT(ph)DSQPEWALDR ddPTM_K562_Paclitaxel_30min_R1 1 LAREGGTDSQPEWALDR 17 1 V9GY20;Q9NXG6;Q9NXG6-3 V9GY20 P4HTM Transmembrane prolyl 4-hydroxylase 1 LAREGGT(0.5)DS(0.5)QPEWALDR 105.58 0.0052935 329560000 3256.1 2955.6 3962.8 3416.1 2692.3 2864.6 2733.6 3760.3 2511.6 3635.1 TRUE FALSE 3301.695446 3278.302403 2962.342129 3197.006636 3059.036841 3372.596589 3252.28633 3440.839044 2752.850402 2894.264625 1.140771793 1.132689242 1.02352152 1.104600667 1.056930598 1.165268912 1.123700405 1.188847424 0.951139843 1 11.49898112 -8.77475863 24.9999305 0.975569822 1.11385677 0.590801453 0.047035295 189.009199 354755.1948 0.04553825 0.012035109 1.68E-09 8.77475863 0.138286948 LAS(ph)ADGGSPEEEEDGEREPLLPR ddPTM_K562_Paclitaxel_30min_R1 1 LASADGGSPEEEEDGEREPLLPR 23 1 Q8TCG2 Q8TCG2 PI4K2B Phosphatidylinositol 4-kinase type 2-beta 1 LAS(0.717)ADGGS(0.283)PEEEEDGEREPLLPR 54.985 0.029306 0 311.8 295.14 360.11 370.36 317.49 275.1 209.53 285 274.83 351.79 TRUE FALSE 316.166162 327.3643833 269.1957767 346.6067673 360.7375132 323.8851224 249.2872237 260.7874711 301.2286495 280.0950049 1.128781865 1.168761947 0.961087388 1.237461437 1.287911269 1.15634023 0.89000953 0.931067911 1.075451701 1 8.129772445 -7.745587175 24.6737679 0.968387962 1.158011624 0.49059453 0.091069221 180.8582817 281503.7773 0.037053816 0.028599487 1.80E-08 7.745587175 0.189623662 LAS(ph)PELER ddPTM_K562_Paclitaxel_30min_R1 4 LASPELER 8 0 P05412;P17535 P05412 JUN;JUND Transcription factor AP-1;Transcription factor jun-D 1 LAS(1)PELER;LAS(1)PELER;LAS(1)PELER;LAS(1)PELER 117.53 0.0051659 145635000 11467.3 11073 15033.5 11462.8 10618.2 8261.6 9034.6 12415.8 10572.5 13131.3 TRUE FALSE 11627.87758 12281.98759 11238.10699 10727.62731 12064.57861 9726.678761 10748.86819 11361.00029 11588.03586 10455.13385 1.112169174 1.174732697 1.074888868 1.026063125 1.153938226 0.930325608 1.028094746 1.086643218 1.108358442 1 13.35192391 -5.911126637 5.348909961 1.049982542 1.142349032 0.286302869 0.059532282 0.257580052 11.9315554 0.015779514 0.033956894 1.23E-06 5.911126637 0.09236649 LAS(ph)PSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR ddPTM_K562_Paclitaxel_30min_R1 2 LASPSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR 38 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 LAS(0.704)PS(0.267)GS(0.027)T(0.002)SSGLEVVAPEGTSAPGGGPGTLDDSATICR;LAS(0.404)PS(0.236)GS(0.26)T(0.04)S(0.04)S(0.019)GLEVVAPEGTSAPGGGPGTLDDSATICR 159.74 4.05E-56 141849000 925.15 694.01 1138.55 1005.85 622.07 853.21 700.16 981.69 910.36 1326.46 TRUE FALSE 938.1049543 769.7843588 851.1089711 941.339283 706.8064657 1004.514814 833.0117049 898.289307 997.8041456 1056.126724 0.888250371 0.728874993 0.805877696 0.891312815 0.669243993 0.95113095 0.78874219 0.850550684 0.944776913 1 10.04456724 -8.818437454 2.104941483 0.999959425 0.815206592 0.394647738 0.076978536 0.286074589 2.523795548 0.068558706 0.019554047 1.52E-09 8.818437454 -0.184752833 LAS(ph)SVLR ddPTM_K562_Paclitaxel_30min_R1 1 LASSVLR 7 0 J3QR09;J3KTE4;P84098 J3QR09 RPL19 Ribosomal protein L19;60S ribosomal protein L19 1 LAS(0.5)S(0.5)VLR 118.74 0.0025845 14844000 3629.2 3694.6 4550.9 4398.2 3133.9 3117.8 3484.7 3939.1 3971.3 3949.8 TRUE FALSE 3680.019997 4097.988922 3401.96901 4116.119138 3560.790237 3670.698054 4145.903634 3604.448868 4352.761109 3144.828592 1.170181423 1.303088166 1.081766116 1.308853255 1.132268463 1.16721721 1.318324199 1.146151138 1.384101226 1 11.61876567 -12.293892 2.234800087 1.58E-05 1.220397711 0.335518538 0.094285963 948813.6936 258445.2992 4802651.664 0.022940448 5.08E-13 12.293892 1.220381958 LASDS(ph)DAESDSR ddPTM_K562_Paclitaxel_30min_R1 2 LASDSDAESDSR 12 0 A0A0A0MRB5;Q8WXG6-6;Q8WXG6-8;Q8WXG6-5;Q8WXG6-4;Q8WXG6-7;Q8WXG6-3;Q8WXG6-2;Q8WXG6 A0A0A0MRB5 MADD MAP kinase-activating death domain protein 1 LAS(0.002)DS(0.986)DAES(0.012)DSR;LAS(0.003)DS(0.997)DAESDSR 169.58 0.00011276 29696000 1733.35 1616.79 2246.7 1950.73 1529.24 1114.34 1443.3 1843.72 1634.58 1920.42 TRUE FALSE 1757.622248 1793.3166 1679.492798 1825.618909 1737.548378 1311.952553 1717.15864 1687.084478 1791.588712 1529.03735 1.149495954 1.172840284 1.098398805 1.193966197 1.136367518 0.858025184 1.123032502 1.103363811 1.171710235 1 10.57840793 -7.027850319 24.90172291 1.054954684 1.152854839 0.267673196 0.082144653 1024.815226 916312.3975 0.027640155 0.02770397 9.38E-08 7.027850319 0.097900155 LASPSGS(ph)TSSGLEVVAPEGTSAPGGGPGTLDDSATICR ddPTM_K562_Paclitaxel_30min_R1 1 LASPSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR 38 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 LAS(0.377)PS(0.109)GS(0.48)T(0.032)S(0.002)S(0.001)GLEVVAPEGTSAPGGGPGTLDDSATICR 146.65 2.65E-46 76653000 4187.8 3508.9 5695.7 4333.5 3520 3500.8 3105.4 4071.6 3722.3 3802.9 TRUE FALSE 4246.44212 3892.013568 4257.750091 4055.568706 3999.483594 4121.617726 3694.633439 3725.692166 4079.843547 3027.866893 1.402453368 1.285397842 1.406188001 1.339414462 1.320891484 1.361228176 1.220209993 1.230467619 1.347431605 1 11.56408607 -14.3036465 0.179823034 6.22E-13 1.392572504 0.776765943 0.053959742 45.46570452 0.548794047 16.45430428 0.170450913 4.97E-15 14.3036465 1.392572504 LASPSGSTSSGLEVVAPEGT(ph)SAPGGGPGTLDDSATICR ddPTM_K562_Paclitaxel_30min_R1 2 LASPSGSTSSGLEVVAPEGTSAPGGGPGTLDDSATICR 38 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 LASPSGSTSSGLEVVAPEGT(0.838)S(0.065)APGGGPGT(0.082)LDDS(0.011)AT(0.004)ICR;LASPSGSTSSGLEVVAPEGT(0.951)S(0.049)APGGGPGTLDDSATICR 214.93 7.86E-203 12563000 1420.57 1462.94 1807.35 1231.62 1078.35 1223.23 1370.79 1652.23 1411.27 1517.3 TRUE FALSE 1440.462363 1622.668737 1351.062139 1152.629406 1225.239527 1440.152665 1630.890246 1511.862749 1546.828789 1208.073427 1.192363254 1.343187177 1.118360945 0.954105421 1.014209484 1.192106898 1.349992649 1.251465941 1.28040958 1 10.23849243 -7.51880408 24.95381449 1.245655005 1.124432434 0.100260348 0.128895252 347.5824117 2128673.449 0.051629894 0.040946168 3.03E-08 7.51880408 -0.121222571 LASQLGVY(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 LASQLGVYR 9 0 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 LASQLGVY(1)R 114.89 0.0072814 30520000 622.37 661.2 710.39 799.66 581.9 561.44 655.26 838.44 473.55 1164.4 TRUE FALSE 631.0851002 733.392052 531.0432585 748.3733867 661.1646316 661.003501 779.5921643 767.2092886 519.0365934 927.0946408 0.680712704 0.791064924 0.572803719 0.807224369 0.713157646 0.712983844 0.840898146 0.827541499 0.559852868 1 9.856572811 -11.61250503 3.236478859 1.015091033 0.728952744 0.438543582 0.093832172 70585150.69 78962874.32 8992476.111 0.022643705 2.44E-12 11.61250503 -0.286138288 LASS(ph)VLR ddPTM_K562_Paclitaxel_30min_R1 1 LASSVLR 7 0 J3QR09;J3KTE4;P84098 J3QR09 RPL19 Ribosomal protein L19;60S ribosomal protein L19 1 LAS(0.224)S(0.776)VLR 112.41 0.0043194 11741000 2422.2 2510.1 3444.1 2938.7 2745.7 2432.3 2389.8 2783.6 3088.5 3162.9 TRUE FALSE 2456.118273 2784.161207 2574.594359 2750.224935 3119.710825 2863.634254 2843.252074 2547.115805 3385.164225 2518.299244 0.975308347 1.10557203 1.022354418 1.09209616 1.238816567 1.137130252 1.129036623 1.011442866 1.34422636 1 11.29823401 -6.524594195 24.98041596 1.145021843 1.044143905 0.196769219 0.098315259 90.77340137 1321820.24 0.027490275 0.035762683 2.99E-07 6.524594195 -0.100877939 LATNTS(ph)APDLK ddPTM_K562_Paclitaxel_30min_R1 1 LATNTSAPDLK 11 0 E7EVA0;P27816;P27816-2;P27816-6;P27816-5;P27816-4;H0Y2V1;H7C4C5;F8W9U4;B5MEG9 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 LATNT(0.077)S(0.923)APDLK 171.62 0.00016729 64853000 8440.2 5297.9 9007 4888.2 3821.9 4861.3 3592.8 5420.8 1592.7 7784.6 TRUE FALSE 8558.38884 5876.342638 6733.071453 4574.692731 4342.507485 5723.383299 4274.515044 4960.269204 1745.685951 6198.094247 1.380809729 0.948088623 1.086313177 0.738080537 0.700619789 0.923410176 0.689649895 0.800289413 0.281648823 1 12.59760898 -2.000000024 0.466068939 0.695088888 17.62625367 0.513080328 0.192485672 72.60351723 0.84438686 0.109968886 1181.148116 0.009999999 2.000000024 16.93116478 LATVHMS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 LATVHMSR 8 0 K7EQQ1;O96005-3;O96005-4;O96005 K7EQQ1 CLPTM1 Cleft lip and palate transmembrane protein 1 1 LATVHMS(1)R 66.962 0.018557 38666000 159.6 0 116.24 0 122.11 62.91 57.602 0 144.35 119.87 TRUE FALSE 161.8348924 0 86.89377436 0 138.7434493 74.0662052 68.5316788 0 158.2154625 95.4404282 1.695663939 0 0.910450382 0 1.4537178 0.776046447 0.718057118 0 1.657740493 1 6.576528611 -8.782958385 24.99999908 1.328870076 0.684002408 0.163329296 0.574170914 469.7747842 545751.9195 0.51416441 0.133251952 1.65E-09 8.782958385 -0.644867667 LAVEALS(ph)SLDGDLAGR ddPTM_K562_Paclitaxel_30min_R1 1 LAVEALSSLDGDLAGR 16 0 P12277;G3V4N7 P12277 CKB Creatine kinase B-type 1 LAVEALS(0.5)S(0.5)LDGDLAGR 136.39 1.66E-07 2562900 1138.6 1133.8 1110.7 1018.6 1018.4 1007.1 920.57 1247.2 920.36 1259.9 TRUE FALSE 1154.543913 1257.592118 830.290048 953.2715551 1157.123322 1185.695045 1095.243352 1141.242575 1008.76469 1003.131688 1.150939529 1.253666027 0.827697956 0.950295526 1.153510885 1.18199341 1.091824099 1.137679717 1.005615416 1 9.970295296 LAVEALSS(ph)LDGDLAGR ddPTM_K562_Paclitaxel_30min_R1 1 LAVEALSSLDGDLAGR 16 0 P12277;G3V4N7 P12277 CKB Creatine kinase B-type 1 LAVEALS(0.168)S(0.832)LDGDLAGR 134.02 4.29E-14 0 726.06 455.33 618.38 591.05 664.49 631.17 598.72 798.89 523.99 702.95 TRUE FALSE 736.2270801 505.0444692 462.262321 553.1426984 755.0047879 743.0991374 712.3239945 731.019308 574.3215807 559.6884041 1.315423144 0.90236722 0.825927994 0.988304732 1.348973433 1.327701507 1.272715299 1.306118373 1.02614522 1 9.128480047 -6.744550523 24.84947151 1.237574821 0.987454492 0.264014838 0.163861115 260.468893 383239.8547 0.04837055 0.062275889 1.80E-07 6.744550523 -0.250120329 LAVLSSS(ph)LTHWK ddPTM_K562_Paclitaxel_30min_R1 1 LAVLSSSLTHWK 12 0 F5GX19;F5H3Y3;Q6IAA8 F5GX19 LAMTOR1 Ragulator complex protein LAMTOR1 1 LAVLS(0.018)S(0.186)S(0.6)LT(0.196)HWK 78.985 0.025765 5148500 2686.2 2463.1 3069.9 2488.4 1731.5 1498.6 2470.1 3338.1 3335.8 4467.5 TRUE FALSE 2723.815088 2732.029588 2294.865777 2328.805162 1967.359615 1764.355669 2938.78858 3054.507569 3656.218495 3557.021048 0.765757371 0.768066748 0.645165082 0.654706602 0.553091924 0.496020587 0.826193756 0.858726313 1.027887787 1 11.7964538 -8.24633819 1.998211068 0.994481541 0.651412707 0.719836065 0.088626374 0.204293368 1.527911137 0.069087238 0.028557329 5.67E-09 8.24633819 -0.343068833 LAVLSSSLT(ph)HWK ddPTM_K562_Paclitaxel_30min_R1 1 LAVLSSSLTHWK 12 0 F5GX19;F5H3Y3;Q6IAA8 F5GX19 LAMTOR1 Ragulator complex protein LAMTOR1 1 LAVLS(0.012)S(0.074)S(0.29)LT(0.624)HWK 88.075 0.021004 3926500 1998.3 1843.5 2444 1812.5 1332.8 1119.1 1605.9 2333.2 2644.1 3142 TRUE FALSE 2026.282365 2044.779564 1826.981973 1696.254362 1514.349924 1317.556672 1910.611142 2134.980097 2898.077619 2501.658675 0.809975552 0.817369525 0.730308251 0.678051878 0.605338346 0.526673237 0.763737739 0.853425816 1.158462442 1 11.28866925 -8.506921958 2.701217168 1.076150832 0.697942789 0.71658252 0.09298561 0.161724176 2.25774167 0.080282186 0.027901163 3.11E-09 8.506921958 -0.378208043 LAVPTEVSTEVPEMDTS(ph)T ddPTM_K562_Paclitaxel_30min_R1 1 LAVPTEVSTEVPEMDTST 18 0 O00488 O00488 ZNF593 Zinc finger protein 593 1 LAVPTEVSTEVPEMDT(0.007)S(0.496)T(0.496) 119.62 0.00010982 56426000 859.14 1008.4 1168.8 890.29 768.82 952.68 791.32 1134.6 927.69 1151.1 TRUE FALSE 871.1706107 1118.500522 873.7219845 833.1907842 873.5463002 1121.624422 941.468839 1038.208648 1016.79877 916.5051881 0.950535384 1.220397371 0.953319191 0.909095546 0.953127502 1.223805862 1.027237872 1.132790803 1.109430457 1 9.839999237 -7.22990774 24.99899452 1.102489041 1.002346506 0.210449271 0.097776998 1154.283411 915143.2012 0.032894243 0.032890543 5.89E-08 7.22990774 -0.100142535 LAWVGDVFTATPAEPRPLT(ph)SPLR ddPTM_K562_Paclitaxel_30min_R1 1 LAWVGDVFTATPAEPRPLTSPLR 23 1 P48634-2;P48634-3;P48634;P48634-4 P48634-2 PRRC2A Protein PRRC2A 1 LAWVGDVFTATPAEPRPLT(0.5)S(0.5)PLR 97.08 0.00099516 211650000 1253.5 1312.2 1356.4 1180.7 1243.3 888.82 1514.9 1900.5 1231.8 2438.7 TRUE FALSE 1271.052867 1455.470434 1013.960044 1104.975187 1412.658509 1046.439747 1802.344367 1739.040662 1350.119894 1941.691601 0.654611096 0.74958888 0.522204475 0.569078625 0.727540104 0.538932005 0.928234105 0.895631758 0.695331788 1 10.92309836 -7.76631893 24.99911945 0.871102089 0.629739887 0.606211408 0.099705909 88.83269456 455105.0263 0.04040643 0.028218804 1.71E-08 7.76631893 -0.241362201 LCCTLSSLSSAAETGRDPLDS(ph)EEEATGAQDER ddPTM_K562_Paclitaxel_30min_R1 2 LCCTLSSLSSAAETGRDPLDSEEEATGAQDER 32 1 O43822-3;O43822-4 O43822-3 C21orf2 Protein C21orf2 1 LCCT(0.001)LS(0.003)S(0.01)LS(0.032)S(0.008)AAET(0.117)GRDPLDS(0.79)EEEAT(0.038)GAQDER;LCCTLSS(0.001)LS(0.002)SAAETGRDPLDS(0.959)EEEAT(0.038)GAQDER 90.136 6.99E-10 50840000 828.51 675.89 836.36 821.34 766.01 704.05 627.67 854.73 830.81 936.74 TRUE FALSE 840.1116962 749.6859559 625.210574 768.6629286 870.3535307 828.9033821 746.7671058 782.1153514 910.6130127 745.8318738 1.126408948 1.005167494 0.838272801 1.03061153 1.166956738 1.111381011 1.001253945 1.048648333 1.220936038 1 9.542706643 -6.526758429 24.57462433 1.091199094 0.98196663 0.202241798 0.091239222 138.4145394 876734.8339 0.027477009 0.035647671 2.97E-07 6.526758429 -0.109232464 LCCTLSSLSSAAETGRDPLDS(ph)EEEATSGAQDER ddPTM_K562_Paclitaxel_30min_R1 1 LCCTLSSLSSAAETGRDPLDSEEEATSGAQDER 33 1 O43822-2;O43822 O43822-2 C21orf2 Protein C21orf2 1 LCCTLSSLSSAAETGRDPLDS(0.893)EEEAT(0.048)S(0.058)GAQDER 80.79 1.89E-06 12141000 458.12 539.63 702.84 459.91 479.24 534.33 447.91 637.42 540.56 550.68 TRUE FALSE 464.5350934 598.5486283 525.3993494 430.4134311 544.5206016 629.0859231 532.8985843 583.2671923 592.4832033 438.4511137 1.059491193 1.365143364 1.198307709 0.981668007 1.241918619 1.434791482 1.215411633 1.330290137 1.35130961 1 8.776272184 -6.991250314 24.9995552 1.28987893 1.162554283 0.117525115 0.142001445 379.8432482 1085277.718 0.043001477 0.048685438 1.02E-07 6.991250314 -0.127324647 LCDFGSASHVADNDITPY(ph)LVSR ddPTM_K562_Paclitaxel_30min_R1 4 LCDFGSASHVADNDITPYLVSR 22 0 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 1 LCDFGSASHVADNDIT(0.059)PY(0.94)LVSR;LCDFGSASHVADNDITPY(1)LVSR;LCDFGSASHVADNDIT(0.261)PY(0.737)LVS(0.002)R;LCDFGSASHVADNDIT(0.023)PY(0.977)LVSR 231.4 9.71E-54 4452710000 15803.7 16812.7 16331.1 16117.2 13305.2 13353 19122.5 22006.1 17451.5 25564.5 TRUE FALSE 16025.00056 18648.36744 12208.11182 15083.51493 15117.5935 15720.96706 22750.89455 20136.54445 19127.79455 20354.44087 0.787297507 0.916181759 0.599776329 0.741042951 0.742717208 0.772360546 1.117736159 0.989294895 0.939735691 1 14.31305597 -7.720323478 11.23608835 1.010729226 0.757926665 0.688893308 0.08288915 0.371815424 100.3374151 0.032694858 0.025260164 1.90E-08 7.720323478 -0.252802562 LCDFGSASHVADNDITPYLVSR ddPTM_K562_Paclitaxel_30min_R1 1 LCDFGSASHVADNDITPYLVSR 22 0 Q13523;H0YDJ3 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 0 130.89 1.01E-10 15268000 1203.7 1328.5 1282.3 1119.9 1256.1 1258.1 1433.7 1751.1 1460.9 2052.2 FALSE TRUE 1220.555514 1473.550123 958.5675057 1048.074626 1427.202086 1481.20637 1705.737091 1602.333125 1601.225972 1633.960514 0.74699205 0.901827254 0.586652797 0.641432041 0.873461797 0.906512953 1.043927975 0.980643725 0.979966137 1 10.6741574 -7.136509307 2.227101811 0.992390968 0.725479126 0.684694235 0.083543054 0.195083718 1.901969971 0.033142476 0.03317242 7.30E-08 7.136509307 -0.266911842 LCNLEEGS(ph)PGSGTYTR ddPTM_K562_Paclitaxel_30min_R1 2 LCNLEEGSPGSGTYTR 16 0 R4GNH9;R4GMQ7;B1AMU7;B1AMU3;B1AMU4;Q9Y3B2 R4GNH9 EXOSC1 Exosome complex component CSL4 1 LCNLEEGS(0.998)PGS(0.002)GTYTR;LCNLEEGS(0.991)PGS(0.008)GT(0.001)YTR 149.99 1.55E-07 22222500 2565.87 2437.01 2893.3 2472.96 2398.3 2382.23 2192.23 2694.5 2142.02 2767.8 TRUE FALSE 2601.800096 2703.090993 2162.850631 2314.355414 2724.989064 2804.685042 2608.194198 2465.585406 2347.770592 2203.720841 1.180639602 1.226603181 0.981453999 1.050203534 1.236540043 1.272704324 1.183541105 1.118828375 1.065366606 1 11.10572576 -8.851797996 2.083782336 1.003424932 1.159438617 0.28777625 0.082726557 0.436278748 3.890508325 0.087482751 0.024821706 1.41E-09 8.851797996 0.156013685 LCSS(ph)SSSDTSSR ddPTM_K562_Paclitaxel_30min_R1 1 LCSSSSSDTSSR 12 0 C9J0I9;Q86WB0-2;Q86WB0 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 LCS(0.023)S(0.244)S(0.244)S(0.244)S(0.244)DTSSR 128.08 0.0011557 6373700 1084.6 897.97 1619 1222.2 1013 1404.5 898.59 1388.2 1249.9 1282.1 TRUE FALSE 1099.787746 996.0134013 1210.263426 1143.813562 1150.98775 1653.568355 1069.092762 1270.263745 1369.95848 1020.807316 1.077370556 0.975711464 1.185594389 1.120498986 1.127526941 1.619863346 1.047301234 1.244371709 1.342034347 1 9.995494859 -6.376927623 1.350493386 1.25092557 1.042359698 0.154493066 0.167574434 0.764966539 2.750463123 0.057572429 0.122408987 4.20E-07 6.376927623 -0.208565871 LCSSS(ph)SSDTSSR ddPTM_K562_Paclitaxel_30min_R1 1 LCSSSSSDTSSR 12 0 C9J0I9;Q86WB0-2;Q86WB0 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 LCSS(0.065)S(0.455)S(0.455)S(0.024)DTSSR 147.33 0.00023803 19570000 2387.7 2303.2 3011.3 2944 2455.7 2241.7 2486.8 2798.7 2444.2 2726.6 TRUE FALSE 2421.135167 2554.671165 2251.060072 2755.185017 2790.207915 2639.23402 2958.657318 2560.932966 2678.976331 2170.917423 1.115258987 1.176770308 1.036916489 1.269133956 1.28526672 1.215722897 1.362860368 1.179654711 1.234029587 1 11.08408913 -6.275992309 24.66311799 1.236812895 1.116360761 0.213145364 0.094362206 855.8377546 1450401.949 0.025020988 0.037309888 5.30E-07 6.275992309 -0.120452134 LCSSSS(ph)SDTSSR ddPTM_K562_Paclitaxel_30min_R1 1 LCSSSSSDTSSR 12 0 C9J0I9;Q86WB0-2;Q86WB0 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 LCS(0.013)S(0.28)S(0.159)S(0.548)SDTSSR 161.25 0.0014036 23793000 2169.8 2208.3 2711.2 2191 2071.2 2378.1 2207 2588.1 2174.8 2828.7 TRUE FALSE 2200.183894 2449.409662 2026.724028 2050.479067 2353.332506 2799.822645 2625.766729 2368.224751 2383.699257 2252.209387 0.976900242 1.087558588 0.899882595 0.910430033 1.044899519 1.243144914 1.165862616 1.051511802 1.058382613 1 11.13712525 -6.999427401 24.55441901 1.114562481 0.972942791 0.392257074 0.078625284 16.55876679 709998.6946 0.025770187 0.028958325 1.00E-07 6.999427401 -0.14161969 LCWAPSPQDRPS(ph)FSALGPQLDMLWS(ph)GS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 LCWAPSPQDRPSFSALGPQLDMLWSGSR 28 1 P52333 P52333 JAK3 Tyrosine-protein kinase JAK3 3 LCWAPS(0.014)PQDRPS(0.93)FS(0.06)ALGPQLDMLWS(0.998)GS(0.998)R 50.945 0.023016 35535000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 LDAQSLNLSQEDFDRYMSGQTS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 LDAQSLNLSQEDFDRYMSGQTSPR 24 1 E9PFK9;Q9UJ41;Q9UJ41-4;Q9UJ41-3;A0A0A0MSJ3;Q3HKR1 E9PFK9 RABGEF1 Rab5 GDP/GTP exchange factor 1 LDAQSLNLSQEDFDRY(0.001)MS(0.01)GQT(0.051)S(0.938)PR;LDAQSLNLSQEDFDRY(0.008)MS(0.187)GQT(0.275)S(0.53)PR;LDAQSLNLSQEDFDRY(0.041)MS(0.146)GQT(0.146)S(0.666)PR 91.809 0.00011746 190573000 2248.3 2084.68 2898.83 2314.27 1823.49 2223.73 2250.87 2987.04 2136.6 3157.71 TRUE FALSE 2279.783137 2312.292412 2166.984514 2165.84308 2071.88021 2618.077293 2677.960832 2733.272307 2341.829977 2514.166969 0.906774755 0.919705191 0.861909547 0.861455547 0.824082185 1.041329922 1.065148363 1.087148285 0.931453641 1 11.29586475 -7.271289715 24.99232328 1.032971089 0.875825109 0.723930522 0.046253761 360.5000549 914660.1094 0.01654352 0.014765792 5.35E-08 7.271289715 -0.157145981 LDFLPEMMVDHCS(ph)LNSSPVSKK ddPTM_K562_Paclitaxel_30min_R1 1 LDFLPEMMVDHCSLNSSPVSKK 22 1 F5H3J7;F5H0D8;E9PKU1;Q92879-4;G5EA30 F5H3J7 CELF1 1 LDFLPEMMVDHCS(0.321)LNS(0.226)S(0.226)PVS(0.226)KK 64.249 0.0050104 11545000 1459.1 1179.3 3143.5 1628.4 1076.5 1007.6 1351.2 2077.8 1453.1 3316.7 TRUE FALSE 1479.531902 1308.059962 2349.884547 1523.961712 1223.137525 1186.283713 1607.583146 1901.277921 1592.676748 2640.754719 0.560268582 0.495335653 0.889853393 0.577093246 0.463177256 0.449221468 0.608758979 0.719975205 0.603114229 1 11.36673459 -9.771312276 0.826328053 1.005093806 0.583745542 0.497783867 0.122654319 3.017571757 2.530573298 0.171020744 0.043836082 1.69E-10 9.771312276 -0.421348264 LDFLPEMMVDHCSLNSS(ph)PVSK ddPTM_K562_Paclitaxel_30min_R1 2 LDFLPEMMVDHCSLNSSPVSK 21 0 F5H3J7;F5H0D8;E9PKU1;Q92879-4;G5EA30 F5H3J7 CELF1 1 LDFLPEMMVDHCS(0.011)LNS(0.224)S(0.756)PVS(0.009)K;LDFLPEMMVDHCS(0.059)LNS(0.222)S(0.672)PVS(0.047)K 110.89 6.49E-05 64217000 5234.9 4484.9 8410.4 4861 3976.1 3138.1 4185.8 7047 4593.2 9325.6 TRUE FALSE 5308.204751 4974.576549 6287.090501 4549.237217 4517.712136 3694.597974 4980.033699 6448.313364 5034.397383 7425.037601 0.71490611 0.669973247 0.846741907 0.612688778 0.608442998 0.497586433 0.670708213 0.868455314 0.678029884 1 12.85818262 -9.371793814 0.865975161 0.997454851 0.666036822 0.467016198 0.102350124 1.179289436 1.583514022 0.107628016 0.036276165 4.25E-10 9.371793814 -0.33141803 LDGLVET(ph)PTGYIESLPR ddPTM_K562_Paclitaxel_30min_R1 2 LDGLVETPTGYIESLPR 17 0 F8VRJ2;F5H4R6;H0YHC3;F8W020;F8W118;F8VXI6;F8VUX1;F8VY35;P55209;F8VV59;B7Z9C2;H0YIV4;F8W0J6;P55209-3;P55209-2 F8VRJ2 NAP1L1 Nucleosome assembly protein 1-like 1 1 LDGLVET(0.999)PT(0.001)GYIESLPR;LDGLVET(1)PTGYIESLPR 232.01 1.33E-39 156476000 11887.6 9378.8 11055.5 8942.6 7755.5 8412 11027.3 14111.6 12320.2 17945.8 TRUE FALSE 12054.06308 10402.8091 8264.402292 8369.061662 8811.930402 9903.75009 13119.67261 12912.7315 13503.61026 14288.43611 0.843623682 0.728057922 0.57839796 0.58572272 0.616717626 0.693130446 0.91820214 0.903719021 0.945072656 1 13.8025604 -7.752429656 4.112813314 0.938069492 0.662883005 0.75049026 0.075652139 0.116011805 4.449059068 0.034763387 0.024659861 1.77E-08 7.752429656 -0.275186487 LDIDS(ph)PPITAR ddPTM_K562_Paclitaxel_30min_R1 2 LDIDSPPITAR 11 0 B4DNK4;H3BTN5;P14618-2;P14618;H3BN34;H3BQZ3;H3BU13;H3BT25;H3BUW1;H3BTJ2;H3BQ34 B4DNK4 PKM Pyruvate kinase;Pyruvate kinase PKM 1 LDIDS(1)PPITAR;LDIDS(1)PPITAR 129.76 0.00097984 59960000 3981.1 4020.7 5672.6 4623.6 3827.4 3792.7 4003.6 4848.3 3718.3 5370.1 TRUE FALSE 4036.847683 4459.693623 4240.481972 4327.06299 4348.756678 4465.282093 4763.2622 4436.406653 4075.459329 4275.670672 0.944143736 1.043039552 0.991770016 1.012019709 1.01709346 1.044346591 1.114038607 1.037593162 0.953174283 1 12.06193502 -6.836987702 2.236139533 1.0367371 0.998881602 0.09582856 0.044174715 0.692900805 7.096950902 0.015608054 0.01900492 1.46E-07 6.836987702 -0.037855498 LDLDLTADS(ph)QPPVFK ddPTM_K562_Paclitaxel_30min_R1 1 LDLDLTADSQPPVFK 15 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 LDLDLT(0.004)ADS(0.996)QPPVFK 86.539 0.017613 5624400 2581.8 1878.4 3016 1971.6 1610.7 1751 1855.2 2702.5 2268.8 5097.2 TRUE FALSE 2617.953166 2083.490064 2254.573499 1845.150401 1830.104609 2061.515265 2207.214515 2472.905757 2486.728377 4058.387842 0.645072198 0.513378747 0.555534263 0.454651076 0.450943744 0.507964084 0.543864855 0.609332043 0.612737982 1 11.98669103 -9.568752313 0.843944423 1.003518428 0.517854338 0.87169445 0.053800339 0.67977015 0.717680297 0.059644084 0.018827129 2.70E-10 9.568752313 -0.48566409 LDLQQGQNLLQGLS(ph)KLSPSTSGPHSHDYLPQER ddPTM_K562_Paclitaxel_30min_R1 1 LDLQQGQNLLQGLSKLSPSTSGPHSHDYLPQER 33 1 Q5JR04;Q9HCE1 Q5JR04 MOV10 Putative helicase MOV-10 1 LDLQQGQNLLQGLS(0.428)KLS(0.428)PS(0.051)T(0.051)S(0.04)GPHS(0.001)HDYLPQER 62.255 0.00028687 20678000 611.56 381.46 854.4 532.67 470.44 557.5 482.42 867.57 582.14 753.34 TRUE FALSE 620.1237268 423.1090928 638.6961529 498.5069303 534.5218926 656.3647973 573.9566766 793.8645133 638.0571481 599.8088945 1.033868841 0.7054065 1.064832747 0.8311096 0.891153662 1.09428987 0.956899242 1.323529078 1.0637674 1 9.228359106 -7.505371166 1.597401757 1.126279652 0.897824436 0.30237272 0.132555987 0.412365422 2.123853982 0.061374838 0.046145289 3.12E-08 7.505371166 -0.228455216 LDNARQSAERNS(ph)NLVGAAHEELQQSR ddPTM_K562_Paclitaxel_30min_R1 1 LDNARQSAERNSNLVGAAHEELQQSR 26 2 P02545-6;P02545;P02545-3;P02545-5;P02545-4;Q3BDU5;P02545-2;Q5TCI8 P02545-6;Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C 1 LDNARQS(0.425)AERNS(0.575)NLVGAAHEELQQSR 56.485 0.0041627 37863000 357.97 294.23 318 315.12 262.7 386.05 383.84 362.23 531.96 381.7 TRUE FALSE 362.9826844 326.3550264 237.716967 294.9096136 298.4841875 454.5105471 456.6716362 331.4563005 583.0571349 303.9093305 1.194378218 1.073856554 0.782197001 0.970386836 0.982148811 1.495546538 1.502657505 1.090642068 1.918523311 1 8.247497158 -7.255097993 24.02312525 1.413462995 0.990852335 0.385957964 0.252445725 297.5073128 1127050.131 0.080398881 0.078441613 5.56E-08 7.255097993 -0.42261066 LDNVPHTPS(ph)SYIETLPK ddPTM_K562_Paclitaxel_30min_R1 1 LDNVPHTPSSYIETLPK 17 0 E9PNJ7;C9J6D1;Q99733;Q99733-2;E9PS34;A8MXH2;E9PNW0;E9PJJ2;E9PKI2;E9PP22 E9PNJ7 NAP1L4 Nucleosome assembly protein 1-like 4 1 LDNVPHT(0.282)PS(0.596)S(0.106)Y(0.016)IETLPK 87.287 0.0063398 23336000 3319.7 2227 4891.4 3142.3 2028.2 2270.9 2517.1 3438.4 3476.9 4959.9 TRUE FALSE 3366.186042 2470.151391 3656.505574 2940.766942 2304.475178 2673.61223 2994.706585 3146.286458 3810.87178 3949.069657 0.852399764 0.625502107 0.925915694 0.744673353 0.583548881 0.677023315 0.758332176 0.796715868 0.965004953 1 11.9472971 -8.71220309 2.286382321 1.004220951 0.733255756 0.511088999 0.094474292 0.24478536 2.380692667 0.088878658 0.026017833 1.94E-09 8.71220309 -0.270965195 LDPPPS(ph)PHANR ddPTM_K562_Paclitaxel_30min_R1 1 LDPPPSPHANR 11 0 A0A087X1U1;F5GXM9;E7EUN2;Q9UPQ3-2;Q9UPQ3;H7C211;H7C0A7 A0A087X1U1 AGAP1 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 1" 1 LDPPPS(1)PHANR 101.45 0.0028249 0 2167.5 2081.9 2339.5 2231.7 2006 2164.8 1887.2 2104.6 1344 2723.6 TRUE FALSE 2197.851687 2309.208883 1748.86429 2088.568751 2279.251162 2548.696885 2245.286348 1925.801093 1473.097205 2168.528825 1.013522007 1.064873501 0.806475003 0.963127041 1.051058734 1.175311509 1.035396128 0.888068017 0.679307182 1 11.0825009 -8.406306727 4.491952172 0.824021062 1.014330684 0.295972595 0.113427501 0.273795978 8.748462038 0.06985495 0.031245747 3.92E-09 8.406306727 0.190309622 LDPPPS(ph)PHSNR ddPTM_K562_Paclitaxel_30min_R1 1 LDPPPSPHSNR 11 0 H0Y873;Q96P47;Q96P47-2;Q96P47-4 H0Y873 AGAP3 "Arf-GAP with GTPase, ANK repeat and PH domain-containing protein 3" 1 LDPPPS(0.995)PHS(0.005)NR 109.83 0.0039941 27251000 3448 3547.2 4623.2 3778.3 3242.6 3560 3262.8 4216.1 2875.6 4429.4 TRUE FALSE 3496.282638 3934.495292 3456.015981 3535.976749 3684.297018 4191.316015 3881.899267 3857.915989 3151.814229 3526.685849 0.991379099 1.115635319 0.979961394 1.002634456 1.044691015 1.188457434 1.100721593 1.093921079 0.893704278 1 11.78409735 -8.753935733 24.99983155 0.946852127 1.066143519 0.342866267 0.065220753 177.5529001 591565.7723 0.048308857 0.017461361 1.76E-09 8.753935733 0.119291392 LDQPVS(ph)APPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 LDQPVSAPPSPR 12 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 2 LDQPVS(1)APPS(1)PR 117.53 0.02105 77064000 5372.2 5441.7 6740.3 5353.1 4759.8 4592.3 5389.6 6307.8 3918.3 7273.6 TRUE FALSE 5447.427375 6035.843209 5038.627902 5009.776126 5408.165344 5406.679926 6412.248464 5771.913018 4294.670222 5791.236327 0.940632892 1.04223742 0.870043565 0.865061593 0.933853333 0.933596838 1.107233085 0.996663353 0.741580896 1 12.49965566 -7.562908255 24.99990886 0.969565986 0.930013401 0.020683051 0.096502226 682.7289237 426384.0042 0.038093281 0.029506947 2.74E-08 7.562908255 -0.039552585 LDQPVSAPPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 LDQPVSAPPSPR 12 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 LDQPVSAPPS(1)PR;LDQPVSAPPS(1)PR;LDQPVSAPPS(1)PR;LDQPVSAPPS(1)PR 181.75 0.00014493 389596000 6322.51 6860.81 10561.8 8573.9 7190.73 6877.66 6398 7376.7 5152.16 8202.7 TRUE FALSE 6411.044647 7609.896438 7895.342963 8024.008429 8170.229166 8097.316434 7611.9871 6750.003291 5647.047988 6530.985237 0.981635146 1.165198842 1.208905345 1.22860612 1.250994891 1.239830767 1.165518957 1.033535224 0.864654839 1 12.67308493 -8.401572919 2.957393425 0.934134371 1.186178549 0.614998993 0.078775146 0.179194017 2.937723101 0.05608987 0.022334385 3.97E-09 8.401572919 0.252044178 LDQVVES(ph)PAIPR ddPTM_K562_Paclitaxel_30min_R1 4 LDQVVESPAIPR 12 0 P16157-14;P16157-10;P16157-12;P16157-21;P16157;P16157-3;P16157-16;P16157-5;P16157-8;P16157-13;P16157-4;P16157-7;P16157-6;P16157-9;P16157-11;P16157-15;H0YBS0;P16157-2 P16157-14 ANK1 Ankyrin-1 1 LDQVVES(1)PAIPR;LDQVVES(1)PAIPR;LDQVVES(1)PAIPR;LDQVVES(1)PAIPR 136.83 0.00025081 320950000 8135.9 7317.1 8888.8 7549.3 6597.1 5863.38 7886.1 9650.6 6471.3 11866.5 TRUE FALSE 8249.827701 8116.005723 6644.712505 7065.121687 7495.73671 6903.168117 9382.446307 8830.721293 7092.89728 9448.100786 0.873173126 0.859009224 0.703285523 0.74778221 0.793359097 0.730640821 0.993051039 0.934655704 0.750722017 1 13.20580864 -7.754305464 24.99998762 0.914161836 0.782963001 0.401457709 0.080670366 180.4152767 632246.9137 0.031995251 0.024247092 1.76E-08 7.754305464 -0.131198836 LDRETEELHHDR ddPTM_K562_Paclitaxel_30min_R1 3 LDRETEELHHDR 12 1 O60869-2;O60869-3;O60869 O60869-2 EDF1 Endothelial differentiation-related factor 1 0 ;; 98.902 0.01078 96990000 9661.2 9205.7 13225.1 11155.5 10241.2 9204.4 8927.7 11558.9 6209.6 12044.2 FALSE TRUE 9796.486607 10210.80946 9886.259939 10440.03616 11636.22482 10836.6711 10621.68447 10576.8993 6806.059825 9589.585429 1.021575612 1.064781114 1.030937157 1.088684828 1.213423136 1.130045838 1.107627076 1.102956887 0.709734521 1 13.22725273 -8.738676994 24.99947247 0.854867303 1.097186532 0.575284303 0.082515708 135.77956 149124.8845 0.054793337 0.020678941 1.83E-09 8.738676994 0.242319229 LDRPAGGPS(ph)AESPRPSSAYNGDLNGLLVPDPLCSGDSTSANK ddPTM_K562_Paclitaxel_30min_R1 1 LDRPAGGPSAESPRPSSAYNGDLNGLLVPDPLCSGDSTSANK 42 2 Q6P2E9 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 LDRPAGGPS(0.351)AES(0.351)PRPS(0.101)S(0.101)AY(0.096)NGDLNGLLVPDPLCS(0.001)GDSTSANK 40.535 0.004428 20809000 250.06 288.94 475.3 351.89 211.56 119.99 335.15 350.21 265.38 321.97 TRUE FALSE 253.5616115 320.4874463 355.3046366 329.3213504 240.3780537 141.2685418 398.7429629 320.4574746 290.8709347 256.3523373 0.98911371 1.250183438 1.386001159 1.284643448 0.937686219 0.551071792 1.555448907 1.250066522 1.134652946 1 8.001984241 -11.01770428 2.476960629 0.999492944 1.153873735 0.027796844 0.262373319 951826.9993 1156153.513 4563.428563 0.07200264 9.60E-12 11.01770428 0.154380791 LDRS(ph)SPYIQVLEEDWR ddPTM_K562_Paclitaxel_30min_R1 1 LDRSSPYIQVLEEDWR 16 1 Q9H257;Q9H257-2;Q9H257-3 Q9H257 CARD9 Caspase recruitment domain-containing protein 9 1 LDRS(0.945)S(0.052)PY(0.003)IQVLEEDWR 97.2 0.0034051 5396700 294.75 191.22 280 299.52 239.59 239.43 267.06 374.66 206.87 364.28 TRUE FALSE 298.8774094 212.0980463 209.310537 280.3101278 272.2262143 281.8895487 317.7332409 342.8302944 226.7407878 290.039536 1.030471271 0.731272878 0.721662087 0.96645489 0.938583126 0.971900426 1.095482517 1.182012284 0.781758208 1 8.180105761 -6.425240001 5.308308384 1.003646811 0.818736636 0.26183053 0.125241169 0.282699806 12.14517922 0.035960193 0.053592708 3.76E-07 6.425240001 -0.184910176 LDRSS(ph)PYIQVLEEDWR ddPTM_K562_Paclitaxel_30min_R1 1 LDRSSPYIQVLEEDWR 16 1 Q9H257;Q9H257-2;Q9H257-3 Q9H257 CARD9 Caspase recruitment domain-containing protein 9 1 LDRS(0.11)S(0.887)PY(0.003)IQVLEEDWR 124.16 5.97E-05 3556100 722.12 735.38 929.05 727.83 788.47 822.31 1142 939.81 396.87 1149 TRUE FALSE 732.2319079 815.6712753 694.4998372 681.1502414 895.8729629 968.1351327 1358.688538 859.9672744 434.9911368 914.8331693 0.800399387 0.891606582 0.759154631 0.744562248 0.979274684 1.058264135 1.485176297 0.940026338 0.475486844 1 9.837364865 -6.860143073 5.486352347 1.018442738 0.803399628 0.135034 0.231160425 0.427223698 19.6127884 0.077303712 0.088507542 1.38E-07 6.860143073 -0.21504311 LDS(ph)PRY(ph)PIPPRMT(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 LDSPRYPIPPRMTPK 15 2 G3V3G0;Q3B8N5 G3V3G0 PROX2 Prospero homeobox protein 2 3 LDS(1)PRY(1)PIPPRMT(1)PK 51.265 0.031216 0 167.73 67.218 152.1 0 0 0 132.41 0 0 114.87 TRUE FALSE 170.0787375 74.55708856 113.7004739 0 0 0 157.5341063 0 0 91.45943095 1.859608525 0.815193007 1.243179327 0 0 0 1.722447916 0 0 1 6.515060038 LDS(ph)SPVSSPR ddPTM_K562_Paclitaxel_30min_R1 2 LDSSPVSSPR 10 0 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 LDS(0.923)S(0.077)PVSSPR;LDS(0.91)S(0.09)PVSSPR 174.23 0.00052317 175135000 6248.7 5985.1 8329.3 6360.9 5927 4836.9 5322.3 6518 6839.2 7303.8 TRUE FALSE 6336.201079 6638.573458 6226.4652 5952.940344 6734.357745 5694.656302 6332.178641 5964.255216 7496.135718 5815.281551 1.089577697 1.141573869 1.070707436 1.023671905 1.158045004 0.979257195 1.088885996 1.025617619 1.289040892 1 12.50563333 LDSDRVSS(ph)ASSTAER ddPTM_K562_Paclitaxel_30min_R1 1 LDSDRVSSASSTAER 15 1 A8MQ02;J3KN01;P55196;P55196-5;P55196-3;P55196-1;Q5TIG5;P55196-2;P55196-6;H0Y7R8 A8MQ02 MLLT4 Afadin 1 LDSDRVS(0.072)S(0.925)AS(0.003)STAER 141.1 8.12E-06 9936700 1434.1 1704 2223.3 1933.2 1627 1597.4 1734.7 2291.6 1470.1 2458.1 TRUE FALSE 1454.181825 1890.048483 1662.000418 1809.213205 1848.624945 1880.676461 2063.850269 2096.914276 1611.309674 1957.137871 0.743014504 0.965720663 0.849199457 0.924417861 0.944555298 0.960932027 1.054524722 1.071418783 0.823299011 1 10.93452967 -3.711891666 0.468426122 0.988325428 1.11E-10 0.40603912 0.075362682 19.43462968 1.050385024 0.045948863 14.50564172 0.000194137 3.711891666 -0.988325428 LDSQPQET(ph)SPELPR ddPTM_K562_Paclitaxel_30min_R1 3 LDSQPQETSPELPR 14 0 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 LDSQPQET(0.683)S(0.317)PELPR;LDSQPQET(0.74)S(0.259)PELPR;LDSQPQET(0.86)S(0.14)PELPR 191.63 1.76E-06 1534413700 7911 8262.8 10177.6 9067.3 7437.7 7521.6 7472.6 8758.9 7716.1 9358.4 TRUE FALSE 8021.778408 9164.960447 7608.139005 8485.763962 8450.840661 8855.450151 8890.48684 8014.776774 8457.265881 7451.152943 1.07658217 1.230005681 1.021068694 1.138852474 1.134165508 1.188467103 1.193169286 1.075642499 1.13502782 1 12.86324796 -9.612945343 1.140899709 1.000003449 1.137138286 0.309583191 0.059315697 3.572018632 5.565873148 0.056543934 0.017104066 2.44E-10 9.612945343 0.137134837 LDSQPQETS(ph)PELPR ddPTM_K562_Paclitaxel_30min_R1 4 LDSQPQETSPELPR 14 0 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 LDS(0.001)QPQET(0.338)S(0.661)PELPR;LDSQPQET(0.082)S(0.918)PELPR;LDSQPQET(0.226)S(0.774)PELPR;LDSQPQET(0.228)S(0.772)PELPR 202.32 7.05E-100 2193251500 11155.7 11205.7 13866.3 11705.4 9903.8 9912.2 9361.2 12053.6 10796.6 12852.1 TRUE FALSE 11311.91422 12429.17622 10365.58107 10954.66804 11252.86523 11669.9895 11137.43883 11029.57144 11833.66167 10232.83497 1.10545262 1.214636634 1.012972564 1.070540869 1.099682079 1.140445393 1.088402077 1.077860777 1.156440196 1 13.32091827 -11.06762015 3.992637192 0.999980331 1.105995295 0.280417907 0.051561523 9576364.533 0.07298467 1767.281104 0.012508409 8.56E-12 11.06762015 0.106014964 LDSS(ph)PSVSSTLAAK ddPTM_K562_Paclitaxel_30min_R1 1 LDSSPSVSSTLAAK 14 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 LDS(0.353)S(0.642)PS(0.005)VSSTLAAK 233.28 3.82E-35 17555000 2397.5 2006.9 4398.9 2592 1968.2 1800.6 1812.9 2467.4 1049.1 3205 TRUE FALSE 2431.072397 2226.020129 3288.34329 2425.760721 2236.302162 2119.911128 2156.888311 2257.778969 1149.870743 2551.819241 0.952682054 0.872326728 1.288627046 0.950600529 0.876356023 0.830745021 0.845235539 0.884772296 0.450608227 1 11.31731042 -6.841073338 2.339706214 0.799675757 1.030810932 0.277032976 0.16519002 0.396208655 4.435814383 0.055779986 0.067491843 1.44E-07 6.841073338 0.231135174 LDSSEMDHS(ph)ENEDYTMSSPLPGK ddPTM_K562_Paclitaxel_30min_R1 1 LDSSEMDHSENEDYTMSSPLPGK 23 0 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 LDS(0.069)S(0.061)EMDHS(0.863)ENEDY(0.005)T(0.002)MSSPLPGK 72.474 0.00124 21330000 2759 1846.8 4644.1 2730 2146.4 1796.1 1758.3 2713.5 2662.4 3524.4 TRUE FALSE 2797.634512 2048.439869 3471.639517 2554.910019 2438.776019 2114.613117 2091.928246 2482.971238 2918.135416 2806.125345 0.996974179 0.729988727 1.237164806 0.910476085 0.869090193 0.753570442 0.745486387 0.884839746 1.039916275 1 11.45436374 -4.950021684 15.26963154 0.901152236 1.551925413 0.029945124 0.147858373 6202026.834 51809264.4 0.037732059 117718971.1 1.12E-05 4.950021684 0.650773176 LDVSVKSNSSFMS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 LDVSVKSNSSFMSR 14 1 Q9BSJ8;Q9BSJ8-2 Q9BSJ8 ESYT1 Extended synaptotagmin-1 1 LDVS(0.163)VKS(0.002)NS(0.002)S(0.007)FMS(0.826)R 66.784 0.030689 0 1074.2 933.13 1502.4 1580.7 1274.7 1494.1 1078.8 1215.8 1648.4 1130.3 TRUE FALSE 1089.242114 1035.012289 1123.100539 1479.320977 1448.335721 1759.057657 1283.496668 1112.510201 1806.736185 899.9442396 1.210344004 1.150084909 1.247966806 1.643791817 1.609361622 1.954629609 1.426195771 1.236199036 2.007609034 1 9.813691805 -6.183431231 4.866914813 1.577301775 1.186913414 0.240855571 0.284404801 0.293744508 12.62102899 0.075565944 0.133789624 6.55E-07 6.183431231 -0.390388361 LEASDCDHQQNS(ph)PTLERPGR ddPTM_K562_Paclitaxel_30min_R1 1 LEASDCDHQQNSPTLERPGR 20 1 B1AN62;Q9HAN9 B1AN62 NMNAT1 Nicotinamide/nicotinic acid mononucleotide adenylyltransferase 1 1 LEASDCDHQQNS(0.965)PT(0.035)LERPGR 68.705 0.010481 14375000 620.04 521.69 697.74 686.44 541.47 697.13 530.07 799.86 550.44 730.63 TRUE FALSE 628.722473 578.6498784 521.5869075 642.4148108 615.2273812 820.7562173 630.6480153 731.9069004 603.3122214 581.7272049 1.080785749 0.994710018 0.896617698 1.104323135 1.057587433 1.410895365 1.084095793 1.258161719 1.037105049 1 9.184198964 -6.706605084 2.407904048 1.170020742 0.995407755 0.214019228 0.12218508 0.369553847 4.381836727 0.038366392 0.050555025 1.97E-07 6.706605084 -0.174612987 LEAVSHTSDMHR ddPTM_K562_Paclitaxel_30min_R1 2 LEAVSHTSDMHR 12 0 Q5T0R8;Q5T0S3;Q5T0R7;Q5T0R6;Q5T0R5;Q5T0R4;Q5T0R3;Q5T0R2;Q5T0R1;Q5T0R9;Q01518-2;Q01518 Q5T0R8 CAP1 Adenylyl cyclase-associated protein;Adenylyl cyclase-associated protein 1 0 ; 178.67 0.00041929 18853800 4328.1 4175.4 5421.1 4676.3 4435.3 3787.7 4028.2 5057.9 4084.9 5942.8 FALSE TRUE 4388.706753 4631.284292 4052.476258 4376.383048 5039.46295 4459.395413 4792.529921 4628.199825 4477.272897 4731.654098 0.927520622 0.978787586 0.856460801 0.924916099 1.065053118 0.942460146 1.012865654 0.978135707 0.94623842 1 12.2081289 -6.570164544 24.99998669 0.988985987 0.920705709 0.385483784 0.04258503 124.700795 65928.54173 0.012317607 0.015901966 2.69E-07 6.570164544 -0.068280277 LEESVALR ddPTM_K562_Paclitaxel_30min_R1 3 LEESVALR 8 0 E9PPC8;E9PK68;Q08209-4;Q08209-3;Q08209-2;Q08209 E9PPC8 PPP3CA Serine/threonine-protein phosphatase;Serine/threonine-protein phosphatase 2B catalytic subunit alpha isoform 0 ;; 119.29 0.001399 36659000 11128.56 10140.66 11744.77 11435.87 10852.1 10421 10079.92 11514.3 8867.32 12068.1 FALSE TRUE 11284.39417 11247.85155 8779.657556 10702.42448 12330.33975 12269.01803 11992.5322 10536.08834 9719.065706 9608.614596 1.174403871 1.17060076 0.913727725 1.113836378 1.283258853 1.276876901 1.248102115 1.096525232 1.011495009 1 13.23011272 -8.606168343 3.637979823 1.006237749 1.165917414 0.296375335 0.099857266 0.349776106 8.80231739 0.08899934 0.029664207 2.48E-09 8.606168343 0.159679665 LEGDSDDLLEDS(ph)DSEEHSR ddPTM_K562_Paclitaxel_30min_R1 1 LEGDSDDLLEDSDSEEHSR 19 0 Q9NR09;A0A3B3IUB9 Q9NR09 BIRC6 Baculoviral IAP repeat-containing protein 6 1 LEGDSDDLLEDS(0.987)DS(0.013)EEHSR 114.19 0.00015317 16374000 1196.9 749.23 1142.5 969.87 837.77 694.27 1043.5 1105.2 321.81 1401.9 TRUE FALSE 1213.660293 831.0334651 854.0617447 907.6668792 951.8884576 817.3890365 1241.498678 1011.306362 352.7212884 1116.19201 1.087322147 0.744525545 0.765156655 0.813181666 0.85279992 0.732301458 1.112262645 0.906032611 0.316004133 1 10.12436951 LEGNS(ph)PQGSNQGVK ddPTM_K562_Paclitaxel_30min_R1 1 LEGNSPQGSNQGVK 14 0 P61006 P61006 RAB8A Ras-related protein Rab-8A 1 LEGNS(0.984)PQGS(0.016)NQGVK 94.007 0.011458 6314200 2352.1 1827.9 4145.7 2454.6 1841.2 1733.5 1587.6 2404.8 1986.7 3003.8 TRUE FALSE 2385.036657 2027.476304 3099.066762 2297.172942 2092.002612 2040.911885 1888.838812 2200.49723 2177.531412 2391.623911 0.997245698 0.847740439 1.295800208 0.9605076 0.874720562 0.853358204 0.789772507 0.920084976 0.910482372 1 11.22377482 -6.521236227 21.98949219 0.883804378 1.043867192 0.271545717 0.113793853 16.96215257 227092.9091 0.033534781 0.044119448 3.01E-07 6.521236227 0.160062815 LEGNSPQGS(ph)NQGVK ddPTM_K562_Paclitaxel_30min_R1 1 LEGNSPQGSNQGVK 14 0 P61006 P61006 RAB8A Ras-related protein Rab-8A 1 LEGNS(0.382)PQGS(0.618)NQGVK 120.29 1.53E-06 0 1605.5 1155.9 2829.6 1868.6 1262.3 1359.4 1411.3 1920.7 1412.3 2521.1 TRUE FALSE 1627.981953 1282.105071 2115.232484 1748.75636 1434.246631 1600.470503 1679.086808 1757.524546 1547.957725 2007.298436 0.811031346 0.638721701 1.053770803 0.871198985 0.714515891 0.797325636 0.836490866 0.875567138 0.771164714 1 10.97103941 -12.32707116 2.184824612 1.930638925 0.820498596 0.215182634 0.103735421 14723385.47 1696474.067 67752486.67 0.02886966 4.71E-13 12.32707116 -1.110140329 LELGLHECSLPVS(ph)PLGSIATR ddPTM_K562_Paclitaxel_30min_R1 2 LELGLHECSLPVSPLGSIATR 21 0 Q96MT8-3;Q96MT8-2 Q96MT8-3 1 LELGLHECSLPVS(0.966)PLGS(0.033)IAT(0.001)R;LELGLHECSLPVS(0.741)PLGS(0.07)IAT(0.188)R 125.19 1.74E-07 20058800 2958.88 2965.9 3141 3206.8 2470.89 2410.91 3253.8 3493.3 2958.6 4380.9 TRUE FALSE 3000.313449 3289.726992 2348.015703 3001.130201 2807.467051 2838.451038 3871.191564 3196.522361 3242.786749 3488.070175 0.860164302 0.943136699 0.673156096 0.860398458 0.804876883 0.813759728 1.109837638 0.916415726 0.929679332 1 11.76821335 -7.728214195 24.99870268 0.982017885 0.824911031 0.499527074 0.079836698 163.7630915 123215.5516 0.030480963 0.023608944 1.87E-08 7.728214195 -0.157106854 LELLPSAES(ph)PVCWLEQPESHQR ddPTM_K562_Paclitaxel_30min_R1 2 LELLPSAESPVCWLEQPESHQR 22 0 O95402;B8ZZF3 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 LELLPS(0.013)AES(0.987)PVCWLEQPESHQR;LELLPS(0.025)AES(0.975)PVCWLEQPESHQR 119.18 5.23E-06 16418500 2815.1 2352.2 3604.2 3351 2263.4 2607.3 2428 3066.5 2837.6 3449.8 TRUE FALSE 2854.520085 2609.021151 2694.275134 3136.081859 2571.7134 3069.668047 2888.700325 2805.981685 3110.164159 2746.728866 1.039243487 0.949864831 0.9809032 1.14175152 0.93628222 1.117572282 1.051687467 1.021572139 1.132315678 1 11.42349879 LELSSSAS(ph)PQEER ddPTM_K562_Paclitaxel_30min_R1 4 LELSSSASPQEER 13 0 A0A075B6T1;Q9C0C7-4;Q9C0C7-2;Q9C0C7-3;Q9C0C7;Q9C0C7-5;Q9C0C7-6 A0A075B6T1 AMBRA1 Activating molecule in BECN1-regulated autophagy protein 1 1 LELSSS(0.001)AS(0.999)PQEER;LELSSS(0.001)AS(0.999)PQEER;LELSSS(0.001)AS(0.999)PQEER;LELSSS(0.003)AS(0.996)PQEER 186.05 0.00014015 331920000 5481.8 5099.23 7721.1 6323.9 5070.5 4765.8 4769.72 6205.5 4611.9 7021.7 TRUE FALSE 5558.562113 5655.981176 5771.812812 5918.313359 5761.187944 5610.947715 5674.74947 5678.304041 5054.893602 5590.673686 0.994256225 1.011681506 1.032400232 1.058604685 1.030499769 1.003626402 1.015038578 1.015674382 0.904165381 1 12.44880643 -8.646854612 8.630879298 0.952500696 1.021609575 0.502225697 0.027159136 0.189156543 13.27515549 0.01813576 0.006794537 2.25E-09 8.646854612 0.069108879 LENS(ph)PLGEALR ddPTM_K562_Paclitaxel_30min_R1 4 LENSPLGEALR 11 0 Q9NX40;D6RG39;Q9NX40-4;Q9NX40-2;Q9NX40-3;D6RIT9;D6RBN5;D6RDK6;D6RI08;D6RIV2;D6RDK1;D6R9T5 Q9NX40 OCIAD1 OCIA domain-containing protein 1 1 LENS(1)PLGEALR;LENS(1)PLGEALR;LENS(1)PLGEALR;LENS(1)PLGEALR 148.57 0.00036402 347104000 9089.3 8824.8 11619.3 9760.2 9022 8043.5 8581.5 10196.7 7131 11911.1 TRUE FALSE 9216.578243 9788.321508 8685.864009 9134.224457 10250.94914 9469.901789 10209.79483 9330.426689 7815.964412 9483.611282 0.971842684 1.032130189 0.915881488 0.963158884 1.08091199 0.998554402 1.07657247 0.983847441 0.824154869 1 13.21122081 -8.544275147 24.59978651 0.909385215 1.00600762 0.263706523 0.061586711 253.7586532 291743.6116 0.040698429 0.015385985 2.86E-09 8.544275147 0.096622405 LEPLRDVHVGLSPPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 LEPLRDVHVGLSPPSR 16 1 A0A5F9ZGY7 A0A5F9ZGY7 1 LEPLRDVHVGLS(0.003)PPS(0.997)R 79.804 0.015869 0 3483.6 3004.1 5516.1 4159.4 3038.3 2835.4 2620.8 3815.6 3239.9 4764.6 TRUE FALSE 3532.381148 3332.097797 4123.492333 3892.634701 3452.167899 3338.218379 3118.083119 3491.440964 3551.106871 3793.571905 0.931149122 0.878353668 1.086968281 1.02611333 0.910004604 0.879967077 0.821938584 0.920357133 0.936085294 1 11.88934117 -6.871656228 7.451107246 0.900527225 0.980702233 0.196490146 0.06667633 0.353821615 21.96567405 0.021904948 0.024905167 1.34E-07 6.871656228 0.080175008 LEPQELS(ph)PLSATVFPK ddPTM_K562_Paclitaxel_30min_R1 1 LEPQELSPLSATVFPK 16 0 Q3T8J9-3;A0A087WUE6;Q3T8J9-2;Q3T8J9;Q9H869-7;Q9H869-5;Q9H869-6;Q9H869-4;Q9H869-3;Q9H869-2;Q9H869;Q9H869-8;Q9H869-9 Q3T8J9-3;Q9H869-7 GON4L;YY1AP1 GON-4-like protein;YY1-associated protein 1 1 LEPQELS(0.707)PLS(0.29)AT(0.003)VFPK 137.73 6.14E-08 29167000 3830.8 3147.2 5620.6 3635.8 3032.3 2577.9 2238.2 3703.3 3055.3 4333.1 TRUE FALSE 3884.443019 3490.821939 4201.610015 3402.616061 3445.350597 3035.054369 2662.886766 3388.68155 3348.775216 3450.011842 1.125921648 1.011828973 1.217853795 0.98626214 0.998648919 0.879722885 0.771848587 0.982223165 0.970656151 1 11.7523856 -6.675715275 2.093906665 0.915331191 1.106228125 0.495985345 0.081269011 0.262793962 2.359713659 0.027410598 0.037673212 2.11E-07 6.675715275 0.190896934 LEPSTSTDQPVT(ph)PEPTSQATR ddPTM_K562_Paclitaxel_30min_R1 4 LEPSTSTDQPVTPEPTSQATR 21 0 Q14676;Q14676-3;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 LEPSTST(0.001)DQPVT(0.985)PEPT(0.013)S(0.002)QATR;LEPST(0.001)S(0.004)T(0.009)DQPVT(0.985)PEPT(0.001)SQATR;LEPSTSTDQPVT(1)PEPTSQATR;LEPSTST(0.001)DQPVT(0.999)PEPTSQATR 235.25 3.47E-54 91474000 4172.31 4001.62 5465.35 4447.57 3736.49 3423.38 3704.07 4637.72 3322.78 5169.38 TRUE FALSE 4230.735213 4438.530404 4085.554798 4162.322767 4245.463197 4030.468376 4406.897946 4243.716738 3641.947866 4115.857518 1.027910999 1.078397487 0.992637568 1.011289324 1.03148935 0.97925362 1.070711978 1.031065026 0.884857615 1 12.00697732 -8.735339196 24.99785467 0.942428806 1.027734872 0.438945738 0.038627124 166.2089329 159189.9885 0.024927964 0.009415005 1.84E-09 8.735339196 0.085306066 LEPTAPALS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 LEPTAPALSPR 11 0 Q96IF1 Q96IF1 AJUBA LIM domain-containing protein ajuba 1 LEPTAPALS(1)PR 98.407 0.010678 11014000 1251.1 1051.7 1351.7 1565.5 1075 1138.9 1090.8 1285.8 848.46 1459.9 TRUE FALSE 1268.61926 1166.528163 1010.446617 1465.095837 1221.4332 1340.867924 1297.773606 1176.563264 929.958374 1162.371579 1.091405953 1.003575951 0.869297423 1.260436735 1.050811309 1.153562207 1.11648773 1.01220925 0.800052575 1 10.18285562 -8.555102527 7.617598237 0.900539958 1.075200125 0.310523208 0.105141123 0.258325875 48.3774891 0.071342298 0.027016153 2.79E-09 8.555102527 0.174660166 LEPTNVQTVTCS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 LEPTNVQTVTCSPR 14 0 J3KTI7;J3QR52;J3QLN7;Q99741 J3KTI7 CDC6 Cell division control protein 6 homolog 1 LEPTNVQTVTCS(1)PR 203.92 1.18E-12 114160000 1763 1696.1 1875.1 1548.4 1648.9 1739.2 1513.5 2047.7 796.09 2284.1 TRUE FALSE 1787.687439 1881.285934 1401.707814 1449.092554 1873.508096 2047.6227 1800.678724 1873.735104 872.5580015 1818.599166 0.983002452 1.03446981 0.770762376 0.796818002 1.030192981 1.125934037 0.990146019 1.030317806 0.479796768 1 10.82861188 -8.71557977 24.99999846 0.739891866 0.967775222 0.260045859 0.155354056 147.3792265 80342.6181 0.104571722 0.039524054 1.92E-09 8.71557977 0.227883357 LEPVS(ph)PPS(ph)PPHTDPELELVPPR ddPTM_K562_Paclitaxel_30min_R1 2 LEPVSPPSPPHTDPELELVPPR 22 0 C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;Q9Y618;C9JQE8;C9J330;H7C1Y3;H0YGK8 C9JE98 NCOR2 Nuclear receptor corepressor 2 2 LEPVS(1)PPS(1)PPHTDPELELVPPR;LEPVS(1)PPS(1)PPHTDPELELVPPR 110.94 0.00011602 51098000 4854.9 4270.2 6808.6 5876.6 4640.8 4776.6 5158.3 5605.6 3692.8 6259 TRUE FALSE 4922.883579 4736.434877 5089.684722 5499.701179 5272.955529 5623.662943 6137.060497 5129.369291 4047.50994 4983.412364 0.987853948 0.950440086 1.021325219 1.103601464 1.058101386 1.12847634 1.231497626 1.029288551 0.812196472 1 12.28291824 -5.976012607 4.847977766 1.064134792 0.970894441 0.085655833 0.101635213 0.418809841 25.62910058 0.028736926 0.05988972 1.06E-06 5.976012607 -0.093240351 LEQGEEPWVPDS(ph)PRPEE ddPTM_K562_Paclitaxel_30min_R1 2 LEQGEEPWVPDSPRPEE 17 1 A0A087WZ61 A0A087WZ61 ZNF316 1 LEQGEEPWVPDS(1)PRPEE;LEQGEEPWVPDS(1)PRPEE 169.43 2.22E-08 48085000 3785.7 3039.9 5899.5 3916.7 3775.4 3716.7 2621.72 3419.5 3160.5 3659.9 TRUE FALSE 3838.71148 3371.806562 4410.098261 3665.500393 4289.673398 4375.80456 3119.177684 3128.992131 3464.080146 2914.010371 1.317329382 1.157101771 1.513411999 1.257888589 1.472085838 1.501643441 1.070407201 1.073775221 1.188767268 1 11.5087903 -7.777001284 24.99867155 1.089385251 1.366312328 0.607029093 0.112931555 178.5703462 286853.0588 0.048009141 0.032493737 1.67E-08 7.777001284 0.276927077 LEQLCEEFS(ph)EEER ddPTM_K562_Paclitaxel_30min_R1 2 LEQLCEEFSEEER 13 0 Q9H3C7;Q9H3C7-3 Q9H3C7 GGNBP2 Gametogenetin-binding protein 2 1 LEQLCEEFS(1)EEER;LEQLCEEFS(1)EEER 207.4 1.68E-10 13290000 1668.93 1640.15 1890.88 1856.23 1752.96 1283.66 1359.42 2009.93 1306.67 2296.87 TRUE FALSE 1692.300169 1819.227124 1413.503958 1737.179716 1991.74283 1511.299078 1617.362848 1839.173901 1432.181492 1828.766633 0.925377869 0.994783638 0.772927465 0.949918751 1.089118094 0.826403462 0.884400896 1.005690867 0.783140651 1 10.83665527 LEQLCEEFS(ph)EEERVR ddPTM_K562_Paclitaxel_30min_R1 4 LEQLCEEFSEEERVR 15 1 Q9H3C7;Q9H3C7-3 Q9H3C7 GGNBP2 Gametogenetin-binding protein 2 1 LEQLCEEFS(1)EEERVR;LEQLCEEFS(1)EEERVR;LEQLCEEFS(1)EEERVR;LEQLCEEFS(1)EEERVR 113.05 0.0012042 64955500 4181.98 3506.89 4540.99 3925.72 3456.87 2989.76 2674.72 3778.5 4781.59 4626.15 TRUE FALSE 4240.540623 3889.78411 3394.560912 3673.94189 3927.754219 3519.951958 3182.234157 3457.49284 5240.883084 3683.338091 1.15127651 1.056048621 0.921599057 0.997448999 1.066357234 0.955641831 0.863953859 0.938684627 1.422862348 1 11.84679811 -8.729725274 24.99999801 1.211432126 0.990469344 0.33518374 0.122481682 182.0920874 143542.3663 0.08027824 0.030336571 1.86E-09 8.729725274 -0.220962781 LEQNGS(ph)PMGAR ddPTM_K562_Paclitaxel_30min_R1 1 LEQNGSPMGAR 11 0 C9JR56;Q9UPW6-2;Q9UPW6;F8WCV6 C9JR56 SATB2 DNA-binding protein SATB;DNA-binding protein SATB2 1 LEQNGS(1)PMGAR 120.29 0.0029338 81019000 1712.6 1491.7 2441 2148.8 1602.4 1437.7 1394.7 2096.4 1771.9 1899.5 TRUE FALSE 1736.581684 1654.568851 1824.73936 2010.985586 1820.674009 1692.655909 1659.337044 1918.297735 1942.098912 1512.380857 1.148243629 1.094015996 1.206534287 1.329681988 1.20384624 1.119199506 1.097168769 1.268395937 1.284133492 1 10.56260578 -12.35316004 2.021008731 4.33E-05 1.193308897 0.364454562 0.07706871 1371385.206 182924.6427 6240570.12 0.021083427 4.43E-13 12.35316004 1.193265639 LERDFSR ddPTM_K562_Paclitaxel_30min_R1 1 LERDFSR 7 1 E7EQD9;E9PDF6;O43795-2;O43795 E7EQD9 MYO1B Unconventional myosin-Ib 0 102.77 0.0069426 0 1568.6 1310.1 2275.6 1928.1 1689.2 1712.8 1333.9 1380.6 1831.3 1301.8 FALSE TRUE 1590.56524 1453.141148 1701.096636 1804.440296 1919.297638 2016.541031 1587.000562 1263.309413 2007.204547 1036.492445 1.534565203 1.401979489 1.64120505 1.740910224 1.851723712 1.945543395 1.531126029 1.218831279 1.936535627 1 10.01749389 -11.71791342 2.82277982 0.897885717 1.639369977 0.431081171 0.222118287 22341268.5 17861221.93 16016788.9 0.058339302 1.91E-12 11.71791342 0.74148426 LES(ph)IAT(ph)T(ph)LVS(ph)HKADVDMVDK ddPTM_K562_Paclitaxel_30min_R1 1 LESIATTLVSHKADVDMVDK 20 1 Q9P2R3;Q9P2R3-2;Q9P2R3-4 Q9P2R3 ANKFY1 Rabankyrin-5 4 LES(1)IAT(1)T(1)LVS(1)HKADVDMVDK 54.728 0.021604 57057000 2973.6 2603.3 3770.9 3597.5 3694.3 3041.6 2027.6 2242.4 2407.6 1979 TRUE FALSE 3015.239574 2887.537098 2818.889657 3366.772452 4197.526205 3580.985054 2412.326515 2051.894123 2638.860737 1575.678714 1.913613193 1.832567181 1.789000278 2.136712531 2.66394803 2.272661947 1.53097614 1.302228751 1.674745438 1 10.62175768 -7.871141853 5.050780244 1.377202645 2.100521534 0.616954621 0.281705388 0.165594789 6.659903202 0.13373981 0.089266676 1.35E-08 7.871141853 0.723318889 LES(ph)SEGEIIQTVDR ddPTM_K562_Paclitaxel_30min_R1 1 LESSEGEIIQTVDR 14 0 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 LES(0.762)S(0.238)EGEIIQTVDR 171.08 4.63E-06 4231000 1013.7 1031.6 1362.3 1124.9 941.21 1200.4 1022.7 1327.4 968.32 1213.3 TRUE FALSE 1027.894928 1144.233577 1018.370516 1052.753949 1069.418737 1413.274086 1216.751986 1214.629085 1061.331463 966.028794 1.064041708 1.184471502 1.054182362 1.089774917 1.107025736 1.462973044 1.259540082 1.257342527 1.098654066 1 9.915922381 -7.053190917 24.99999057 1.240133952 1.100803377 0.180671581 0.117753042 464.3517852 218246.3966 0.037945719 0.037945994 8.85E-08 7.053190917 -0.139330574 LESEST(ph)SPSLEMK ddPTM_K562_Paclitaxel_30min_R1 2 LESESTSPSLEMK 13 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 LES(0.001)ES(0.009)T(0.839)S(0.147)PS(0.003)LEMK;LESES(0.121)T(0.806)S(0.072)PS(0.001)LEMK 186.16 0.0004267 34012000 4557 3930.4 7945.6 5140.8 3956 3498.6 3150.6 5417.7 3247.7 6750.2 TRUE FALSE 4620.81206 4359.534364 5939.63501 4811.092097 4494.874176 4119.027587 3748.409903 4957.432569 3559.656096 5374.505535 0.859765057 0.811150781 1.105150041 0.895169252 0.836332598 0.766401218 0.697442747 0.922397891 0.662322529 1 12.39191631 -6.805876064 3.419879515 0.798807348 0.925409587 0.159489946 0.11663287 0.390920846 9.389750711 0.03634578 0.043749964 1.56E-07 6.805876064 0.126602239 LESFT(ph)S(ph)LQMSK ddPTM_K562_Paclitaxel_30min_R1 1 LESFTSLQMSK 11 0 Q7Z443 Q7Z443 PKD1L3 Polycystic kidney disease protein 1-like 3 2 LES(0.095)FT(0.961)S(0.944)LQMSK 99.752 0.024506 214330000 6018.6 5598.3 5473.7 5950.7 6130.9 5194.1 5214.6 5367.8 6496.7 4851.5 TRUE FALSE 6102.878969 6209.541326 4091.796737 5569.048736 6966.032377 6115.200706 6204.043128 4911.771885 7120.737063 3862.761637 1.579926369 1.607539349 1.059293097 1.441727256 1.803381371 1.583116247 1.606115963 1.271570018 1.843431651 1 11.91541694 -11.65767259 6.181871477 0.996002713 1.522383743 0.34322815 0.220716904 0.012356822 0.00068427 0.217172599 0.052441763 2.20E-12 11.65767259 0.52638103 LESS(ph)EGEIIQTVDR ddPTM_K562_Paclitaxel_30min_R1 1 LESSEGEIIQTVDR 14 0 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 LES(0.061)S(0.939)EGEIIQTVDR 120.21 0.0011518 2414600 1352.5 1223.5 1614.4 1519.8 1365.9 1158.2 1239.7 1573.4 948.57 1933.3 TRUE FALSE 1371.439173 1357.085868 1206.824753 1422.32683 1551.958705 1363.590508 1474.926603 1439.729849 1039.684387 1539.292399 0.890954294 0.881629682 0.784012676 0.924013418 1.008228655 0.885855416 0.958184816 0.935319274 0.675430079 1 10.58805159 -6.369421301 17.77248436 0.914534742 0.85484144 0.083033641 0.091402498 8.28832014 1345.201124 0.025704413 0.03812577 4.27E-07 6.369421301 -0.059693302 LETHMTPEMFR ddPTM_K562_Paclitaxel_30min_R1 1 LETHMTPEMFR 11 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 125.23 0.003787 11518000 2026.8 2134.9 2745.5 2664 1938.4 1827.6 2317.7 2484.5 1961.7 2792 FALSE TRUE 2055.181453 2367.995602 2052.364569 2493.142964 2202.442897 2151.699199 2757.471476 2273.426217 2150.13005 2222.988867 0.924512706 1.065230527 0.923245545 1.121527417 0.990757502 0.967930713 1.240434226 1.02268898 0.967224839 1 11.11828501 -6.252896559 24.97658706 1.048062603 0.980419693 0.127050972 0.086709198 1465.037483 4283304.955 0.023719953 0.040234627 5.59E-07 6.252896559 -0.06764291 LETLGSASTST(ph)PGRR ddPTM_K562_Paclitaxel_30min_R1 3 LETLGSASTSTPGRR 15 1 Q96FF9;B5MBX0 Q96FF9 CDCA5 Sororin 1 LETLGS(0.003)AS(0.003)T(0.069)S(0.383)T(0.542)PGRR;LETLGSAS(0.004)T(0.028)S(0.134)T(0.835)PGRR;LETLGSAS(0.006)T(0.069)S(0.196)T(0.73)PGRR 127.18 0.00052181 34595600 4599.1 4410.89 4837.13 4625.88 3574.08 3551.83 3547.18 5137.31 4171.97 5007 TRUE FALSE 4663.501589 4892.485887 3615.936707 4329.196761 4060.930206 4181.69718 4220.238887 4700.863449 4572.706359 3986.570652 1.16980282 1.227241736 0.90702938 1.085945074 1.018652511 1.04894596 1.058613845 1.179174749 1.147027548 1 11.96093252 -11.75269937 14.46680491 0.999976254 1.089791298 0.090769845 0.088134937 7.04E-05 1.20E-06 0.088976895 0.021574375 1.77E-12 11.75269937 0.089815044 LEVLMEEMILY(ph)Y(ph)SVS(ph)EER ddPTM_K562_Paclitaxel_30min_R1 1 LEVLMEEMILYYSVSEER 18 0 Q8NHU6-3;Q8NHU6-2;Q8NHU6 Q8NHU6-3 TDRD7 Tudor domain-containing protein 7 3 LEVLMEEMILY(0.982)Y(0.626)S(0.566)VS(0.826)EER 44.759 0.030981 116000000 622.06 710.49 499.85 706.85 713.83 581.52 794.7 671.36 477.08 655.88 TRUE FALSE 630.7707592 788.0637009 373.6566854 661.5158047 811.0657312 684.6444071 945.4901764 614.3237775 522.9056657 522.211296 1.207884173 1.509089725 0.715527773 1.266758896 1.553137087 1.311048636 1.810550985 1.176389293 1.001329672 1 9.028489855 -8.52103283 23.38202612 1.030062554 1.338017617 0.205078531 0.266606944 57.21809487 724919.9119 0.180968582 0.070957629 3.01E-09 8.52103283 0.307955063 LEVS(ph)PEAQPTAR ddPTM_K562_Paclitaxel_30min_R1 4 LEVSPEAQPTAR 12 0 Q6WKZ4 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 LEVS(1)PEAQPTAR;LEVS(0.983)PEAQPT(0.017)AR;LEVS(0.995)PEAQPT(0.005)AR;LEVS(0.947)PEAQPT(0.053)AR 171.99 0.00013926 139715000 8282.6 7898.2 10273.3 8869 7566 7339 7191.1 9039.7 7396.1 9276.7 TRUE FALSE 8398.581954 8760.552186 7679.678356 8300.182036 8596.617293 8640.468605 8555.573685 8271.721061 8106.528452 7386.103448 1.137078842 1.186085769 1.039746926 1.123756537 1.163890725 1.169827727 1.158333856 1.119903224 1.097537898 1 12.85059775 -9.177004074 1.693959404 1.000314404 1.1388181 0.547732856 0.037980604 0.5367444 2.949623606 0.038193752 0.010901587 6.65E-10 9.177004074 0.138503697 LFAPQQILQCS(ph)PAN ddPTM_K562_Paclitaxel_30min_R1 1 LFAPQQILQCSPAN 14 0 K7ERV3;P04183 K7ERV3 TK1 "Thymidine kinase;Thymidine kinase, cytosolic" 1 LFAPQQILQCS(1)PAN 88.134 0.017656 7243400 1270.4 1265.7 1498.3 1726.4 1300 1139.9 1272.1 1413.3 1638 1329 TRUE FALSE 1288.18952 1403.893406 1120.035634 1615.676431 1477.082009 1342.04526 1513.474334 1293.231343 1795.337219 1058.14907 1.217398905 1.32674445 1.058485676 1.526889241 1.395911078 1.26829508 1.430303514 1.222163662 1.696677027 1 10.04732717 -6.261544211 24.99994548 1.372391335 1.213463165 0.136437658 0.184900971 18.45729929 4402170.073 0.04776521 0.076353265 5.48E-07 6.261544211 -0.15892817 LFDHPESPTPNPT(ph)EPLFLAQAEVYK ddPTM_K562_Paclitaxel_30min_R1 1 LFDHPESPTPNPTEPLFLAQAEVYK 25 0 A0A0U1RQF0;P49327 A0A0U1RQF0 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 LFDHPES(0.306)PT(0.306)PNPT(0.389)EPLFLAQAEVYK 60.991 0.0072495 16883000 1280.8 1329.9 2160.9 1359.6 1076.5 1063.2 1317.4 2236.6 1276 2678.3 TRUE FALSE 1298.735152 1475.102979 1615.354069 1272.401341 1223.137525 1251.743592 1567.369773 2046.58687 1398.565501 2132.46099 0.609031142 0.691737381 0.757506973 0.596682119 0.573580258 0.586994837 0.735005133 0.959730039 0.655845761 1 11.05830363 -8.015781109 5.73117746 0.855701608 0.640431305 0.529829803 0.099117759 0.142527267 16.2839275 0.044468412 0.027075282 9.64E-09 8.015781109 -0.215270303 LFEDGT(ph)LGISLDET(ph)VNEK ddPTM_K562_Paclitaxel_30min_R1 1 LFEDGTLGISLDETVNEK 18 0 P23378 P23378 GLDC "Glycine dehydrogenase (decarboxylating), mitochondrial" 2 LFEDGT(1)LGISLDET(1)VNEK 57.973 0.019208 2084900 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 LFIGGLSFETTEESLR ddPTM_K562_Paclitaxel_30min_R1 1 LFIGGLSFETTEESLR 16 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 99.539 0.0052034 0 415.95 383.05 472.6 466.27 394.14 384.79 375.8 388.26 435.54 587.9 FALSE TRUE 421.7745833 424.8726944 353.286285 436.3655291 447.8285408 453.0271038 447.1060882 355.2748896 477.375563 468.0856573 0.901062822 0.907681506 0.754747084 0.932234351 0.956723484 0.967829492 0.955180064 0.758995462 1.019846593 1 8.87062875 -6.457212899 24.9999777 0.933941061 0.85709466 0.206740462 0.077094307 349.8517058 133192.876 0.021635648 0.032090827 3.49E-07 6.457212899 -0.076846401 LFLDHDKTLQTDSIDSFETQRT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 LFLDHDKTLQTDSIDSFETQRTPR 24 2 P06400;A0A3B3IS71 P06400 RB1 Retinoblastoma-associated protein 1 LFLDHDKTLQTDS(0.014)IDS(0.033)FET(0.119)QRT(0.834)PR 77.03 0.0021957 11365000 931.01 870.06 1607.4 986.49 872.79 850.5 802.49 1104.9 1253.7 1509 TRUE FALSE 944.0470124 965.0560932 1201.59199 923.2209468 991.6787745 1001.324233 954.7582882 1011.031848 1374.123487 1201.464972 0.785746597 0.803232817 1.000105719 0.768412703 0.825391333 0.833419415 0.794661776 0.84149923 1.143706657 1 10.23057887 -8.749207349 24.91082168 1.071853293 0.832754376 0.662136161 0.068655345 106.3630373 216613.8921 0.046171139 0.017164003 1.78E-09 8.749207349 -0.239098917 LFLINEQS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 LFLINEQSPR 10 0 Q6NW34;Q6NW34-2;E9PFF8 Q6NW34 C3orf17 Uncharacterized protein C3orf17 1 LFLINEQS(1)PR 93.839 0.014279 14029000 1566.1 1209.1 1903.6 1648.7 1128.6 1346.7 1360.5 1577.4 995.83 1999.7 TRUE FALSE 1588.030232 1341.113627 1423.012637 1542.959761 1282.334427 1585.518336 1618.647773 1443.390024 1091.483921 1592.160042 0.997406159 0.842323379 0.89376231 0.969098407 0.805405483 0.995828494 1.016636349 0.906560889 0.685536562 1 10.63676965 -8.545418582 24.9944931 0.827195058 0.928249928 0.112466494 0.096136573 435.7718472 483219.286 0.061734138 0.023336643 2.85E-09 8.545418582 0.101054869 LFLSHPQTK ddPTM_K562_Paclitaxel_30min_R1 1 LFLSHPQTK 9 0 P02008;A0A494C057 P02008 HBZ Hemoglobin subunit zeta 0 96.331 0.026756 15981000 3554.9 3524 6284.7 4239.2 3927.1 3641.2 3594.9 4677.2 3865.4 5659 FALSE TRUE 3604.679568 3908.762237 4698.049757 3967.316686 4462.037506 4286.915695 4277.013508 4279.842666 4236.688941 4505.692694 0.800027834 0.867516385 1.042692007 0.880512045 0.990311104 0.951444314 0.949246608 0.949874516 0.940296915 1 12.1375332 -5.555324758 7.288317834 0.958434611 0.816099018 0.630798132 0.040894657 0.092187654 15.95306154 0.009604322 0.026371813 2.78E-06 5.555324758 -0.142335593 LFPADT(ph)SPSTATK ddPTM_K562_Paclitaxel_30min_R1 4 LFPADTSPSTATK 13 0 Q6NZY4-2;Q6NZY4 Q6NZY4-2 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 LFPADT(0.626)S(0.373)PSTATK;LFPADT(0.606)S(0.392)PS(0.001)TATK;LFPADT(0.499)S(0.499)PS(0.002)TATK;LFPADT(0.499)S(0.499)PS(0.002)TATK 179.46 0.00052423 189522000 17926.5 15482.2 28572.6 19275.7 15140.4 12627.5 12979.6 18841.9 14501.9 22661.8 TRUE FALSE 18177.52631 17172.59895 21359.09375 18039.44288 17202.77881 14866.80983 15442.41134 17241.16299 15894.87229 18043.31272 1.007438412 0.951743132 1.183767863 0.999785525 0.953415765 0.823951236 0.855852336 0.955543101 0.880928715 1 14.13917662 -6.814107468 3.043470493 0.897516561 1.043370668 0.426646484 0.072323436 0.233965118 4.415176776 0.023590095 0.028485177 1.53E-07 6.814107468 0.145854107 LFPDT(ph)PLALDANK ddPTM_K562_Paclitaxel_30min_R1 1 LFPDTPLALDANK 13 0 Q12906;Q12906-7;Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3 Q12906 ILF3 Interleukin enhancer-binding factor 3 1 LFPDT(1)PLALDANK 147.51 0.00031798 34251000 2638.9 1816.1 3739.9 2442.2 1506.7 1312.8 1623.6 2435.8 1097.5 3258 TRUE FALSE 2675.852742 2014.38794 2795.715991 2285.568223 1711.938049 1545.606647 1931.669624 2228.863586 1202.919779 2594.017812 1.031547559 0.776551314 1.077755125 0.881091954 0.659956166 0.595835017 0.744663208 0.859232183 0.463728419 1 11.34097267 -6.630717214 4.924289716 0.709346407 0.948630418 0.336361479 0.154140636 0.233242507 9.152198521 0.043902402 0.05714043 2.34E-07 6.630717214 0.239284011 LFPEFDDS(ph)DYDEVPEEGPGAPAR ddPTM_K562_Paclitaxel_30min_R1 5 LFPEFDDSDYDEVPEEGPGAPAR 23 0 Q96P48-3;Q96P48 Q96P48-3 ARAP1 "Arf-GAP with Rho-GAP domain, ANK repeat and PH domain-containing protein 1" 1 LFPEFDDS(0.949)DY(0.051)DEVPEEGPGAPAR;LFPEFDDS(0.912)DY(0.088)DEVPEEGPGAPAR;LFPEFDDS(1)DYDEVPEEGPGAPAR;LFPEFDDS(0.999)DY(0.001)DEVPEEGPGAPAR;LFPEFDDS(0.999)DY(0.001)DEVPEEGPGAPAR 156.79 1.74E-18 37281200 8571.5 8353.71 10063.8 9266.85 7747.07 7260.77 8190.82 10208.94 9225.24 11700.08 TRUE FALSE 8691.527445 9265.796308 7523.069222 8672.515718 8802.352093 8548.365613 9744.985336 9341.626825 10111.36552 9315.597274 0.933008071 0.994654023 0.807577765 0.930967222 0.944904748 0.9176401 1.046093455 1.00279419 1.085423213 1 13.18543256 -7.758715851 24.99740618 1.033810576 0.921107239 0.55657816 0.049025678 54.74792101 502500.3135 0.019350371 0.014305883 1.74E-08 7.758715851 -0.112703336 LFPGS(ph)PAIYK ddPTM_K562_Paclitaxel_30min_R1 2 LFPGSPAIYK 10 0 P49792;Q99666;O14715;Q7Z3J3;P0DJD1;P0DJD0;F8VYC4;A0A1W2PNU4;A0A286YES2;J3KQ37;Q99666-2;F8W705;H0YBN8;C9J6W1;C9J1W9;Q7Z3J3-2;C9JF75;J3KNE0;A6NKT7 P49792;J3KNE0 RANBP2;RGPD5;RGPD8;RGPD4;RGPD2;RGPD1;RGPD6;RGPD3 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 1;RanBP2-like and GRIP domain-containing protein 3 1 LFPGS(1)PAIYK;LFPGS(1)PAIYK 131.12 0.00085692 28889000 7874.1 7088.1 12257.7 8604.5 6989.1 5921.6 5778.4 8166.4 6280.8 9963.8 TRUE FALSE 7984.361694 7862.002728 9163.092034 8052.645882 7941.133746 6971.712617 6874.821235 7472.613347 6884.098903 7933.172091 1.006452602 0.99102889 1.155035077 1.015060028 1.00100359 0.878805166 0.866591718 0.941945197 0.867761196 1 12.95368213 -7.056159634 2.946508185 0.904907474 1.045472799 0.548073039 0.056282707 0.195719874 3.366549154 0.019456838 0.020404814 8.79E-08 7.056159634 0.140565325 LFPSPGLPT(ph)RTSPVR ddPTM_K562_Paclitaxel_30min_R1 1 LFPSPGLPTRTSPVR 15 1 M0QYT1;M0R2C2;A0A384DVU0;Q8IY17-5;Q8IY17-2;Q8IY17-3;Q8IY17 M0QYT1 PNPLA6 Neuropathy target esterase 1 LFPSPGLPT(0.559)RT(0.271)S(0.17)PVR 113.88 0.0088984 71004000 2058.1 2072.3 2348.5 2175.2 1968.2 2120.1 1802.8 2568.5 1848.3 2827.6 TRUE FALSE 2086.91975 2298.560722 1755.592129 2035.692408 2236.302162 2496.069967 2144.871889 2350.289893 2025.837473 2251.333568 0.926970476 1.020977413 0.779800983 0.904216255 0.993323332 1.108707303 0.952711726 1.043954537 0.899838879 1 11.13656411 -6.788520925 6.054249986 1.005644684 0.906690946 0.26466649 0.074680146 0.232748606 25.92548806 0.023275593 0.027280311 1.63E-07 6.788520925 -0.098953738 LFPSPGLPTRTS(ph)PVR ddPTM_K562_Paclitaxel_30min_R1 1 LFPSPGLPTRTSPVR 15 1 M0QYT1;M0R2C2;A0A384DVU0;Q8IY17-5;Q8IY17-2;Q8IY17-3;Q8IY17 M0QYT1 PNPLA6 Neuropathy target esterase 1 LFPSPGLPT(0.151)RT(0.122)S(0.726)PVR 74.853 0.026036 63950000 1341.8 1259.3 1737.5 1555.6 1191 1177 1210.1 1556.6 1363.9 1554.5 TRUE FALSE 1360.58934 1396.794633 1298.846636 1455.830779 1353.234364 1385.724424 1439.710158 1424.357114 1494.908689 1237.692047 1.099295534 1.128547797 1.049410182 1.176246371 1.093353042 1.119603562 1.163221628 1.150817053 1.207819581 1 10.27343668 -7.569750335 8.745912243 1.142902868 1.110386776 0.010654817 0.058232091 0.886053467 152.058268 0.020893803 0.016187095 2.69E-08 7.569750335 -0.032516091 LFQECCPHSTDR ddPTM_K562_Paclitaxel_30min_R1 4 LFQECCPHSTDR 12 0 Q5T6W2;P61978-3;P61978;P61978-2 Q5T6W2 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 ;;; 137.95 0.00031822 165614000 10155.3 8948.1 12194.3 9951.1 8408 8656.5 9833.3 11616.5 7434.4 13073.7 FALSE TRUE 10297.50553 9925.083819 9115.698148 9312.880985 9553.311949 10191.60873 11699.11734 10629.60582 8148.507338 10409.27276 0.989262724 0.953484844 0.875728627 0.894671626 0.917769393 0.97908941 1.123913035 1.021166998 0.782812356 1 13.34558166 -7.313479492 5.65123145 0.992298646 0.92313318 0.090918731 0.084009693 0.479131983 35.45844796 0.031082685 0.02759791 4.86E-08 7.313479492 -0.069165465 LFQLGPPS(ph)PVK ddPTM_K562_Paclitaxel_30min_R1 2 LFQLGPPSPVK 11 0 Q9NZH5-2;Q9NZH5;O95997 Q9NZH5-2 PTTG2;PTTG1 Securin-2;Securin 1 LFQLGPPS(1)PVK;LFQLGPPS(1)PVK 113.52 0.0047424 18313900 6142.8 5765.4 10727.7 6975.3 5142 4700.8 5305.9 7614 2784.4 9331.3 TRUE FALSE 6228.818152 6394.885869 8019.359456 6527.935478 5842.427455 5534.420877 6312.666826 6967.143175 3051.854061 7429.575938 0.838381383 0.86073363 1.079383201 0.878641733 0.786374283 0.744917466 0.849667179 0.937757852 0.410770963 1 12.85906415 -6.651869645 4.345780563 0.786145448 0.927803495 0.135427881 0.158511393 0.430262389 14.28360324 0.046528083 0.060541386 2.23E-07 6.651869645 0.141658048 LFQLPT(ph)PPLSR ddPTM_K562_Paclitaxel_30min_R1 1 LFQLPTPPLSR 11 0 A0A0C4DGS9;Q9Y6K0 A0A0C4DGS9 CEPT1 Choline/ethanolaminephosphotransferase 1 1 LFQLPT(0.779)PPLS(0.221)R 101.61 0.02112 21498000 3130.7 2997.6 4028.6 3798.7 2898.1 2918.9 2781.4 3662.2 3176.7 3967.3 TRUE FALSE 3174.539459 3324.888105 3011.530105 3555.068384 3292.870285 3436.525932 3309.15613 3351.073251 3481.836229 3158.762082 1.004994797 1.052592129 0.953389343 1.125462536 1.042455937 1.0879344 1.047611705 1.060881815 1.102278721 1 11.62514356 -6.26026498 24.99918451 1.068281632 1.008552097 0.345517058 0.039519808 118.8851611 2530638.145 0.010165746 0.016478822 5.49E-07 6.26026498 -0.059729535 LFQLPTPPLS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 LFQLPTPPLSR 11 0 A0A0C4DGS9;Q9Y6K0 A0A0C4DGS9 CEPT1 Choline/ethanolaminephosphotransferase 1 1 LFQLPT(0.037)PPLS(0.963)R 122.52 0.0023579 18342000 2440.8 2848.5 2797.2 2568.3 2190.6 2739.3 2314 2888.1 2326.1 2911.2 TRUE FALSE 2474.978731 3159.508863 2091.012265 2403.580733 2488.996807 3225.076393 2753.06942 2642.737878 2549.532298 2317.895842 1.067769606 1.363093546 0.902116578 1.03696667 1.073817366 1.391381068 1.187745096 1.140145226 1.099933937 1 11.17860002 -4.97295206 19.42742269 1.139665685 0.82671517 0.015999295 0.144218683 48909845.63 829358181 0.036638918 514968875 1.06E-05 4.97295206 -0.312950515 LFSLS(ph)NPSLSTTNLSGPSR ddPTM_K562_Paclitaxel_30min_R1 2 LFSLSNPSLSTTNLSGPSR 19 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 LFSLS(0.991)NPS(0.008)LSTTNLSGPSR;LFS(0.071)LS(0.922)NPS(0.007)LSTTNLSGPSR 173.49 8.05E-14 161338000 3407.4 3447.6 3775.6 3422.8 3085.6 2624.4 3683.7 3882.3 3153.8 4530.4 TRUE FALSE 3455.114113 3824.020627 2822.403084 3203.276928 3505.91096 3089.800492 4382.662845 3552.474382 3456.736582 3607.101993 0.957864269 1.06013654 0.782457244 0.888047228 0.971946722 0.856588058 1.215009405 0.98485554 0.958314067 1 11.8166245 -7.695892337 24.99999966 1.038304617 0.920623138 0.278205691 0.09470181 80.89923305 30854.60451 0.036703676 0.028430532 2.01E-08 7.695892337 -0.117681479 LFSLS(ph)NPSLSTTNLSGPSRR ddPTM_K562_Paclitaxel_30min_R1 2 LFSLSNPSLSTTNLSGPSRR 20 1 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 LFS(0.249)LS(0.748)NPS(0.003)LSTTNLSGPSRR;LFS(0.022)LS(0.977)NPS(0.001)LSTTNLSGPSRR 88.329 0.00085222 36820000 949 936.16 1199.62 1087.44 784.24 888.12 1234.19 1176.75 1505.41 1281.4 TRUE FALSE 962.2889279 1038.373115 896.7610943 1017.696466 891.0667653 1045.615612 1468.37111 1076.777742 1650.011357 1020.249977 0.943189365 1.017763429 0.878962132 0.997497171 0.873380824 1.024862177 1.439226801 1.0554058 1.617261842 1 9.994706962 -7.610568714 6.162245755 1.280827168 0.946217239 0.470409903 0.169111868 0.174643866 9.924573922 0.059688402 0.045975189 2.45E-08 7.610568714 -0.334609929 LFSLSNPSLSTT(ph)NLS(ph)GPS(ph)RR ddPTM_K562_Paclitaxel_30min_R1 1 LFSLSNPSLSTTNLSGPSRR 20 1 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 3 LFS(0.014)LS(0.049)NPS(0.077)LS(0.097)T(0.36)T(0.41)NLS(0.996)GPS(0.998)RR 47.796 0.029471 15693000 0 0 0 0 0 0 165.64 0 0 125.64 TRUE FALSE 0 0 0 0 0 0 197.0693253 0 0 100.034499 0 0 0 0 0 0 1.970013617 0 0 1 6.64435382 -7.607850468 24.86441994 0.705721504 9.42E-06 0.329520834 0.51779816 30.65736146 8966.556671 0.199262119 0.154347775 2.47E-08 7.607850468 -0.705712081 LFVGGIKEDTEEHHLR ddPTM_K562_Paclitaxel_30min_R1 2 LFVGGIKEDTEEHHLR 16 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ; 139.48 9.57E-09 26146000 3727.1 3588.6 5778.7 4308 3262.5 2834.7 3399.4 5080.6 2969.4 6513.5 FALSE TRUE 3779.290899 3980.415484 4319.795715 4031.704162 3706.907735 3337.394244 4044.418404 4648.971318 3254.624138 5186.045125 0.728742386 0.767524267 0.832965316 0.777414015 0.714785091 0.643533591 0.779865641 0.896438655 0.627573432 1 12.34041904 -11.55096397 2.792292048 1.013561526 0.756442757 0.48554735 0.076435749 27799784.48 28902512.51 2831935.562 0.018947472 2.81E-12 11.55096397 -0.257118769 LFVLLPEQS(ph)PVSYSKR ddPTM_K562_Paclitaxel_30min_R1 2 LFVLLPEQSPVSYSKR 16 1 Q96K76-2;Q96K76-4;Q96K76 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 1 LFVLLPEQS(0.977)PVS(0.016)YS(0.006)KR;LFVLLPEQS(0.584)PVS(0.208)YS(0.208)KR 95.365 0.0037885 42497000 5784.6 4852.6 8582.3 5931.7 4475.6 4650.8 4840.1 6616.3 7402.2 7832.1 TRUE FALSE 5865.602247 5382.423278 6415.59222 5551.267311 5085.252493 5475.55408 5758.483708 6054.204017 8113.214384 6235.913721 0.940616325 0.863133058 1.0288135 0.890209127 0.815478328 0.878067646 0.923438644 0.970860773 1.301046606 1 12.60638525 -8.582746074 7.230127806 1.149610285 0.906601612 0.560841043 0.08546354 0.155699754 15.40559247 0.05622704 0.020951167 2.61E-09 8.582746074 -0.243008673 LGADES(ph)EEEGRR ddPTM_K562_Paclitaxel_30min_R1 1 LGADESEEEGRR 12 1 F5H7V1;O43847;O43847-2 F5H7V1 NRD1 Nardilysin 1 LGADES(1)EEEGRR 74.133 0.027735 8726500 1858.1 1703 2553.9 2090.5 1521.1 1419.1 1314 2000.2 1466.8 2138.8 TRUE FALSE 1884.119133 1888.939299 1909.136359 1956.424687 1728.299572 1670.75746 1563.32464 1830.270525 1607.692694 1702.911386 1.106410556 1.1092411 1.121101412 1.148870518 1.014908695 0.981118262 0.918030529 1.074789058 0.944084764 1 10.73378765 -6.871379087 4.739413642 0.985620298 1.120173927 0.730458591 0.039737551 0.11087889 4.134368675 0.012279836 0.01410446 1.34E-07 6.871379087 0.134553628 LGAGEGGEASVS(ph)PEKTSTTSK ddPTM_K562_Paclitaxel_30min_R1 2 LGAGEGGEASVSPEKTSTTSK 21 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 LGAGEGGEAS(0.004)VS(0.989)PEKT(0.006)STTSK;LGAGEGGEAS(0.036)VS(0.929)PEKT(0.017)S(0.007)T(0.009)T(0.002)S(0.001)K 104.66 0.0001748 224258000 5709.2 3312.2 12837.6 5152 4196.4 3567.3 2923.8 5440.5 5264 7153.9 TRUE FALSE 5789.146414 3673.837197 9596.589107 4821.573779 4768.020726 4199.910568 3478.575787 4978.295566 5769.63072 5695.931253 1.016365219 0.644993248 1.68481477 0.846494377 0.837092393 0.737352749 0.61071239 0.874009068 1.012938967 1 12.47571602 -6.480934095 24.99990754 0.823725708 1.101235139 0.180634134 0.260449819 821.3809164 489560.2597 0.073313286 0.10872916 3.30E-07 6.480934095 0.277509431 LGAGGGS(ph)PEKSPSAQELK ddPTM_K562_Paclitaxel_30min_R1 2 LGAGGGSPEKSPSAQELK 18 1 Q9UNE7;H3BS86 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 1 LGAGGGS(0.816)PEKS(0.181)PS(0.003)AQELK;LGAGGGS(0.988)PEKS(0.004)PS(0.009)AQELK 84.975 0.0041225 152014000 6715.9 4134.4 15691.7 6963.3 4712.5 3741.5 3670.5 6762.4 4005.6 9077.2 TRUE FALSE 6809.94332 4585.807774 11730.13626 6516.705105 5354.422283 4405.002492 4366.958214 6187.89191 4390.355777 7227.261657 0.942257752 0.634515255 1.623040208 0.901683848 0.740864595 0.609498134 0.604234137 0.856187613 0.607471541 1 12.81923341 -6.608459803 4.709551178 0.718629544 1.057811033 0.247829124 0.255321565 0.286412072 11.31395108 0.076596658 0.100381697 2.46E-07 6.608459803 0.339181489 LGAGGGSPEKS(ph)PSAQELK ddPTM_K562_Paclitaxel_30min_R1 1 LGAGGGSPEKSPSAQELK 18 1 Q9UNE7;H3BS86 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 1 LGAGGGS(0.176)PEKS(0.817)PS(0.007)AQELK 73.296 0.013047 88444000 3875.9 2419.7 8800.7 4310.2 2675.7 2173.2 2010.3 3896.9 2532.1 4999.2 TRUE FALSE 3930.174558 2683.891029 6578.854439 4033.763064 3040.17564 2558.586507 2391.743931 3565.834021 2775.319519 3980.360296 0.98739166 0.674283439 1.652828877 1.013416566 0.763794082 0.642802741 0.60088629 0.895857097 0.697253342 1 11.95868331 -6.711726577 4.687345603 0.745860887 1.100984498 0.278119739 0.249593856 0.261631507 12.18486891 0.076815128 0.097813038 1.94E-07 6.711726577 0.355123612 LGAHEGLS(ph)PTPFMNSNLMGK ddPTM_K562_Paclitaxel_30min_R1 2 LGAHEGLSPTPFMNSNLMGK 20 0 Q99081;Q99081-3;B4DGI9;H0YNQ5 Q99081 TCF12 Transcription factor 12 1 LGAHEGLS(0.999)PT(0.001)PFMNSNLMGK;LGAHEGLS(0.993)PT(0.007)PFMNSNLMGK 158.99 3.01E-13 64547000 5802.2 4914.1 9007.2 5818.8 4719.5 4332.7 4813.6 7171.5 5917 8881.9 TRUE FALSE 5883.448701 5450.638056 6733.22096 5445.608212 5362.375802 5101.043511 5726.955471 6562.236312 6485.354288 7071.763905 0.831963394 0.770760751 0.95212751 0.770049493 0.758279812 0.721325483 0.809834088 0.92794901 0.91707732 1 12.78785439 -8.292627414 3.717413423 0.947710158 0.799810501 0.547316642 0.061266903 0.199084906 5.956904647 0.037823535 0.017628609 5.10E-09 8.292627414 -0.147899658 LGASNS(ph)PGQPNSVK ddPTM_K562_Paclitaxel_30min_R1 6 LGASNSPGQPNSVK 14 0 P49756 P49756 RBM25 RNA-binding protein 25 1 LGAS(0.001)NS(0.916)PGQPNS(0.083)VK;LGASNS(0.999)PGQPNS(0.001)VK;LGAS(0.002)NS(0.997)PGQPNS(0.001)VK;LGASNS(1)PGQPNSVK;LGAS(0.013)NS(0.97)PGQPNS(0.017)VK;LGASNS(0.999)PGQPNSVK 202.32 1.56E-09 664752000 23230.5 19668.4 42923 25734.1 19576.9 16918.7 16093.7 25723.9 21510.8 30003.4 TRUE FALSE 23555.79867 21815.86243 32086.55779 24083.63001 22243.60522 19918.99389 19147.39556 23538.49413 23577.00845 23888.69061 0.986064873 0.913229728 1.343169381 1.008160322 0.931135389 0.83382527 0.801525537 0.985340491 0.986952732 1 14.54404016 -6.651264276 4.221651391 0.911861519 1.079218376 0.252484142 0.120191576 0.299391453 9.538786987 0.03790441 0.049379161 2.23E-07 6.651264276 0.167356857 LGASNS(ph)PGQPNSVKR ddPTM_K562_Paclitaxel_30min_R1 2 LGASNSPGQPNSVKR 15 1 P49756 P49756 RBM25 RNA-binding protein 25 1 LGAS(0.012)NS(0.982)PGQPNS(0.006)VKR;LGASNS(0.957)PGQPNS(0.043)VKR 150.01 3.22E-06 148890000 5097.1 4245.2 8906.1 4968.7 4249.8 3682.6 3958.3 5665.3 4658.2 6156.6 TRUE FALSE 5168.475126 4708.705292 6657.644906 4650.029821 4828.69471 4335.657404 4709.366761 5183.997403 5105.640923 4901.881541 1.054385971 0.960591408 1.358181517 0.948621419 0.985069645 0.884488409 0.96072635 1.057552566 1.041567586 1 12.2591199 LGDLYEEEMR ddPTM_K562_Paclitaxel_30min_R1 4 LGDLYEEEMR 10 0 P08670;B0YJC4 P08670 VIM Vimentin 0 ;;; 145.9 0.0030082 71829000 5683.1 5327.5 6638.7 5912.1 5135.1 5014.8 5110.2 5594.8 4756.4 7499.9 FALSE TRUE 5762.680934 5909.174466 4962.678079 5532.924368 5834.587558 5904.104369 6079.833773 5119.486818 5213.273472 5971.416263 0.965044251 0.989576711 0.831072205 0.926568191 0.977086055 0.98872765 1.01815608 0.857332096 0.873038027 1 12.54385743 -11.42463073 3.595321797 1.000534942 0.937303611 0.091472902 0.060159859 48993867.39 154.1977177 217118.865 0.015498668 3.76E-12 11.42463073 -0.063231331 LGDLYEEEMRELR ddPTM_K562_Paclitaxel_30min_R1 2 LGDLYEEEMRELR 13 1 P08670;B0YJC4 P08670 VIM Vimentin 0 ; 123.67 0.0090042 13833800 4287 3667.7 5532.4 4355.1 3850.4 3531.7 3415.8 4230.9 5479.3 4381.8 FALSE TRUE 4347.031227 4068.151889 4135.677196 4075.783379 4374.889668 4157.997407 4063.930218 3871.458637 6005.611247 3488.786755 1.24600084 1.166064932 1.185419886 1.168252365 1.253985977 1.191817586 1.164854863 1.109686234 1.721403935 1 11.7685097 LGDLYEEEMRELRR ddPTM_K562_Paclitaxel_30min_R1 4 LGDLYEEEMRELRR 14 2 P08670;B0YJC4 P08670 VIM Vimentin 0 ;;; 101.71 0.003631 40713500 17936.3 17010 22085.1 17304.1 14384.2 16422.2 13435.8 15550.2 52372.8 17190.6 FALSE TRUE 18187.46354 18867.20932 16509.44336 16194.29248 16343.57157 19334.44659 15985.17291 14229.11345 57403.44145 13687.14628 1.328798799 1.378461875 1.206200549 1.183175232 1.194081748 1.412598813 1.167896695 1.039596798 4.193967118 1 13.74053406 -8.664845559 23.18777506 2.606105749 1.242462772 0.361575573 0.721799395 6.997630699 1668.905708 0.433242436 0.16374981 2.16E-09 8.664845559 -1.363642977 LGDSS(ph)LSR ddPTM_K562_Paclitaxel_30min_R1 1 LGDSSLSR 8 0 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 LGDS(0.132)S(0.868)LSR 125.71 4.67E-06 0 2647.6 2347.2 2837.1 2560.3 1874.1 2090.7 2174.9 3067.2 3000.9 3643.3 TRUE FALSE 2684.674569 2603.475234 2120.839016 2396.093817 2129.384149 2461.45629 2587.575921 2806.622215 3289.149853 2900.79346 0.925496629 0.897504517 0.731123758 0.826013244 0.73406955 0.848545863 0.892023495 0.967536039 1.133879367 1 11.50223186 -8.278511685 1.897753632 1.063728512 0.822771288 0.666067299 0.06688379 0.217650147 1.448289822 0.051514713 0.020378757 5.27E-09 8.278511685 -0.240957224 LGDVTDADS(ph)EADENEQVSAV ddPTM_K562_Paclitaxel_30min_R1 1 LGDVTDADSEADENEQVSAV 20 0 E9PCH4;Q8TEU7;Q8TEU7-4;A0A5F9ZHG7 E9PCH4 RAPGEF6 Rap guanine nucleotide exchange factor 6 1 LGDVTDADS(0.999)EADENEQVS(0.001)AV 92.211 0.00050711 0 273.92 372.97 485.54 603.1 214.29 276.26 353.38 414.83 489.47 499.91 TRUE FALSE 277.7557251 413.6921259 362.9594219 564.4198654 243.479926 325.2508321 420.4320102 379.5876022 536.4857805 398.0280676 0.697829494 1.039354155 0.911894038 1.418040363 0.611715469 0.817155519 1.056287344 0.95367044 1.347859169 1 8.636726358 -8.667659237 10.51532463 1.173386702 0.945290922 0.151639608 0.222538976 0.635295984 65.02406239 0.148362706 0.055897301 2.15E-09 8.667659237 -0.22809578 LGDVYVNDAFGTAHR ddPTM_K562_Paclitaxel_30min_R1 2 LGDVYVNDAFGTAHR 15 0 P00558;P00558-2;P07205 P00558;P07205 PGK1;PGK2 Phosphoglycerate kinase 1;Phosphoglycerate kinase 2 0 ; 186.77 1.42E-06 54180000 7810 8522.7 11062.9 8483 7519.4 7186.6 8028.6 9515.6 8186.4 11180.1 FALSE TRUE 7919.364096 9453.237208 8269.934071 7938.938349 8543.669584 8461.042605 9551.984938 8707.190385 8972.740298 8901.589483 0.889657303 1.061971823 0.929040155 0.891856265 0.959791462 0.95050919 1.073065092 0.978161305 1.007993046 1 13.11984725 -7.644602381 14.81978036 1.012979187 0.949507897 0.303658095 0.050094493 0.985901 122.3399818 0.019080858 0.014778924 2.27E-08 7.644602381 -0.063471289 LGFVDVQNCIS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 LGFVDVQNCISR 12 0 Q14573 Q14573 ITPR3 "Inositol 1,4,5-trisphosphate receptor type 3" 1 LGFVDVQNCIS(1)R;LGFVDVQNCIS(1)R 132.51 0.00062017 42297000 1786.73 1588.12 2375.7 1753.53 1600.45 1556.74 1492.49 1836.36 1688.86 2032.7 TRUE FALSE 1811.749733 1761.516312 1775.925153 1641.066434 1818.458386 1832.805981 1775.682186 1680.349756 1851.082549 1618.434624 1.119445732 1.088407456 1.097310405 1.013983765 1.123590881 1.132455988 1.09716028 1.038256183 1.143748732 1 10.66038337 -11.45276915 2.943855168 0.997728929 1.09277186 0.348655104 0.038824228 14548131.67 15651429.12 268791.1157 0.009900533 3.53E-12 11.45276915 0.095042931 LGGLLPPGGEGGPEATVVS(ph)DEDEAAEMEDEAVR ddPTM_K562_Paclitaxel_30min_R1 5 LGGLLPPGGEGGPEATVVSDEDEAAEMEDEAVR 33 0 P51178;P51178-2 P51178 PLCD1 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase delta-1" 1 LGGLLPPGGEGGPEAT(0.324)VVS(0.676)DEDEAAEMEDEAVR;LGGLLPPGGEGGPEAT(0.035)VVS(0.965)DEDEAAEMEDEAVR;LGGLLPPGGEGGPEAT(0.101)VVS(0.899)DEDEAAEMEDEAVR;LGGLLPPGGEGGPEAT(0.005)VVS(0.995)DEDEAAEMEDEAVR;LGGLLPPGGEGGPEAT(0.002)VVS(0.998)DEDEAAEMEDEAVR 124.97 6.58E-21 24089200 14252.81 14664.61 19421.41 16507.68 14968.76 13553.54 12921.61 16678.34 16570.69 17628.97 TRUE FALSE 14452.39331 16265.74171 14518.23484 15448.95129 17007.75854 15957.07002 15373.41804 15261.41091 18162.37881 14036.17624 1.029653167 1.158844221 1.034344012 1.100652416 1.211708819 1.136853068 1.09527109 1.087291201 1.293969134 1 13.77686235 -6.534811582 24.9267864 1.141229846 1.080197058 0.111333859 0.080078555 478.492207 999528.1958 0.02261638 0.029215767 2.92E-07 6.534811582 -0.061032788 LGGLRPESPES(ph)LTSVSR ddPTM_K562_Paclitaxel_30min_R1 1 LGGLRPESPESLTSVSR 17 1 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 LGGLRPES(0.118)PES(0.694)LT(0.182)S(0.005)VSR 112.94 0.0019065 358580000 1963.8 1815.9 2794.8 1978.5 1760.9 1663.4 1678.7 1963.2 2142.4 2450.5 TRUE FALSE 1991.299259 2014.166103 2089.218174 1851.607865 2000.764392 1958.380635 1997.224562 1796.413906 2348.187092 1951.086755 1.020610311 1.032330366 1.070797169 0.9490136 1.025461522 1.003738368 1.023647235 0.920724771 1.203527771 1 10.93006221 -8.756069896 24.99999989 1.101763875 1.008131953 0.283829629 0.060889535 148.1522821 689813.6551 0.040816424 0.014415998 1.75E-09 8.756069896 -0.093631921 LGGLRPESPESLTSVS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 LGGLRPESPESLTSVSR 17 1 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 LGGLRPES(0.371)PES(0.006)LT(0.038)S(0.038)VS(0.547)R 67.644 0.0259 51977000 1132 1087.7 1637.1 1578.2 1067.9 1266.7 1026.1 1419.2 1279 1520.3 TRUE FALSE 1147.851493 1206.458764 1223.793858 1476.981316 1213.36606 1491.33146 1220.797118 1298.630102 1401.853665 1210.462025 0.948275508 0.996692783 1.011013838 1.220179803 1.002399112 1.232034899 1.008538139 1.072838366 1.158114534 1 10.2413421 -6.019891378 23.51850337 1.101127656 0.980326362 0.300804485 0.0807465 391.8785898 463339.0139 0.020424502 0.036081934 9.55E-07 6.019891378 -0.120801294 LGGPEGPGS(ph)PLLAT ddPTM_K562_Paclitaxel_30min_R1 1 LGGPEGPGSPLLAT 14 0 Q9C086 Q9C086 INO80B INO80 complex subunit B 1 LGGPEGPGS(0.982)PLLAT(0.018) 93.623 0.011791 11504000 2914.8 2569.3 3872.4 3163.6 2805.5 2611.2 2297.6 2802.8 3379.4 3926.4 TRUE FALSE 2955.616193 2849.824863 2894.764727 2960.700856 3187.656598 3074.259657 2733.557606 2564.684645 3704.00647 3126.197525 0.945434884 0.911594626 0.925969874 0.947061352 1.01965937 0.983386249 0.874403356 0.820384709 1.184828035 1 11.61019322 -8.76550169 24.99992207 1.092413988 0.93152527 0.49370496 0.066344579 93.40853666 574808.9437 0.057601055 0.016995819 1.72E-09 8.76550169 -0.160888718 LGHPEALSAGTGS(ph)PQPPSFTYAQQR ddPTM_K562_Paclitaxel_30min_R1 4 LGHPEALSAGTGSPQPPSFTYAQQR 25 0 H0Y2Y8;Q15942-2;Q15942;H7C3D3 H0Y2Y8 ZYX Zyxin 1 LGHPEALSAGTGS(1)PQPPSFTYAQQR;LGHPEALSAGT(0.002)GS(0.998)PQPPSFTYAQQR;LGHPEALSAGTGS(1)PQPPSFTYAQQR;LGHPEALSAGT(0.014)GS(0.986)PQPPSFTYAQQR 180.13 4.47E-31 632158000 4442.71 3717.75 5041.39 4199.98 3899.36 3701.93 4111.7 3861.19 3829.23 4794.08 TRUE FALSE 4504.921647 4123.666518 3768.628743 3930.612081 4430.518849 4358.415308 4891.87361 3533.157809 4197.044651 3817.043864 1.180212176 1.080329874 0.987316069 1.029752924 1.16071992 1.141830029 1.281586952 0.925626724 1.099553686 1 11.89824005 -8.298444387 24.97630864 1.0094427 1.114815233 0.266195223 0.086511153 935.1631668 631177.9197 0.049771228 0.023910171 5.03E-09 8.298444387 0.105372533 LGHVVMGNNAVS(ph)PYQQVIEK ddPTM_K562_Paclitaxel_30min_R1 2 LGHVVMGNNAVSPYQQVIEK 20 0 P60228;H0YAW4;E5RGA2 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E 1 LGHVVMGNNAVS(0.985)PY(0.015)QQVIEK;LGHVVMGNNAVS(1)PYQQVIEK 155.11 2.64E-12 121588000 7375.1 6137.1 11460 8070.2 5680.6 5228.7 6038.4 7678.7 6760.8 9857.9 TRUE FALSE 7478.374154 6807.169332 8566.781265 7552.613493 6454.393893 6155.93653 7184.154877 7026.346506 7410.205048 7848.854569 0.952798155 0.867281878 1.091468977 0.962256776 0.822335774 0.784310179 0.915312523 0.895206612 0.944112925 1 12.93826641 -4.912935195 18.00817326 0.915818429 2.320328949 0.011011168 0.08349316 14660663.29 32157814.6 0.022233234 822515438.4 1.22E-05 4.912935195 1.40451052 LGHY(ph)ATQLQK ddPTM_K562_Paclitaxel_30min_R1 2 LGHYATQLQK 10 0 K7EK35;P42229;C9JVV6 K7EK35 STAT5A Signal transducer and activator of transcription;Signal transducer and activator of transcription 5A 1 LGHY(1)ATQLQK;LGHY(0.538)AT(0.462)QLQK 147.75 0.0009315 23825000 2706.75 2464.39 4516.79 3118.81 2694.75 2336.55 2086.28 2914.23 2356.95 4141.3 TRUE FALSE 2744.652851 2733.460434 3376.470502 2918.783486 3061.820572 2750.904336 2482.140739 2666.647971 2583.345579 3297.300787 0.832393836 0.828999418 1.024010462 0.885203891 0.928583945 0.834289776 0.752779591 0.808736644 0.78347283 1 11.68706978 -7.378108034 5.488735322 0.817013808 0.90170079 0.117776351 0.080573271 0.384623994 15.91801816 0.028272889 0.024791635 4.19E-08 7.378108034 0.084686982 LGIAVIHGEAQDAES(ph)DLVDGRHSPPMVR ddPTM_K562_Paclitaxel_30min_R1 2 LGIAVIHGEAQDAESDLVDGRHSPPMVR 28 1 C9K0K7;I3L0S1;E7EPA1;O60256-4;O60256-3;O60256-2;O60256 C9K0K7 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 1 LGIAVIHGEAQDAES(0.736)DLVDGRHS(0.264)PPMVR;LGIAVIHGEAQDAES(0.556)DLVDGRHS(0.444)PPMVR 84.573 1.70E-06 146987000 2895.8 2855.7 3288.9 3161.8 2469.9 2739.8 2814.2 3560.6 2758.3 4317.4 TRUE FALSE 2936.350134 3167.494983 2458.576518 2959.0163 2806.342196 3225.665061 3348.179759 3258.104805 3023.247039 3437.51151 0.854208088 0.921450001 0.715219865 0.860801859 0.816387723 0.938372149 0.974012668 0.947809133 0.879487103 1 11.74714883 -7.285660704 8.478203274 0.946468673 0.833416587 0.510120106 0.056007992 0.248968905 79.67873042 0.019586011 0.017557958 5.18E-08 7.285660704 -0.113052086 LGIAVIHGEAQDAESDLVDGRHS(ph)PPMVR ddPTM_K562_Paclitaxel_30min_R1 10 LGIAVIHGEAQDAESDLVDGRHSPPMVR 28 1 C9K0K7;I3L0S1;E7EPA1;O60256-4;O60256-3;O60256-2;O60256 C9K0K7 PRPSAP2 Phosphoribosyl pyrophosphate synthase-associated protein 2 1 LGIAVIHGEAQDAES(0.232)DLVDGRHS(0.768)PPMVR;LGIAVIHGEAQDAES(0.025)DLVDGRHS(0.975)PPMVR;LGIAVIHGEAQDAES(0.037)DLVDGRHS(0.963)PPMVR;LGIAVIHGEAQDAES(0.001)DLVDGRHS(0.999)PPMVR;LGIAVIHGEAQDAES(0.166)DLVDGRHS(0.834)PPMVR;LGIAVIHGEAQDAES(0.003)DLVDGRHS(0.997)PPMVR;LGIAVIHGEAQDAES(0.052)DLVDGRHS(0.948)PPMVR;LGIAVIHGEAQDAES(0.001)DLVDGRHS(0.999)PPMVR;LGIAVIHGEAQDAES(0.015)DLVDGRHS(0.985)PPMVR;LGIAVIHGEAQDAES(0.024)DLVDGRHS(0.976)PPMVR 84.948 2.04E-06 2346069000 15632.08 14934.12 17248.63 15783.47 14332.85 14362.42 15516.84 20339.5 17402.1 22194.7 TRUE FALSE 15850.97735 16564.67773 12894.00003 14771.18888 16285.22683 16909.39353 18461.07939 18611.53252 19073.64946 17671.40796 0.896984405 0.9373717 0.729653238 0.835880701 0.921557969 0.956878681 1.04468639 1.05320032 1.079350865 1 14.10912937 -7.37425062 1.601610043 1.051090919 0.850385423 0.710923898 0.054844359 0.216283153 1.106113024 0.026645592 0.022215654 4.22E-08 7.37425062 -0.200705496 LGIHEDSQNR ddPTM_K562_Paclitaxel_30min_R1 2 LGIHEDSQNR 10 0 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ; 176.33 0.00014888 72370000 12114.9 11560.7 13868 12315.9 10919.4 9781.2 10299.7 13124.1 11305.3 13255 FALSE TRUE 12284.54598 12822.93632 10366.85188 11526.0133 12406.80715 11515.75849 12254.01431 12009.12579 12391.22458 10553.62372 1.164012125 1.215026863 0.982302587 1.09213798 1.175596882 1.091166294 1.161119121 1.13791491 1.174120369 1 13.36545083 LGIHEDSTNR ddPTM_K562_Paclitaxel_30min_R1 4 LGIHEDSTNR 10 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ;;; 167.93 0.00025105 213153000 15933.8 16161.2 20834.9 17333.6 13440.5 14536.5 14914.8 17134.8 15448.3 18382.2 FALSE TRUE 16156.92236 17925.73447 15574.87181 16221.90048 15271.32365 17114.34417 17744.80544 15679.09179 16932.17824 14635.89755 1.103924259 1.224778625 1.064155564 1.108363899 1.043415588 1.169340255 1.21241662 1.07127641 1.156893739 1 13.8372236 -11.36745302 2.825098398 0.997909499 1.128160056 0.300672904 0.058693238 8378370.647 9892844.303 144199.054 0.014514228 4.29E-12 11.36745302 0.130250556 LGIHEDSTNRR ddPTM_K562_Paclitaxel_30min_R1 4 LGIHEDSTNRR 11 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ;;; 109.44 0.0025275 42631900 16829.2 16438.4 22279.4 19197.6 16180.5 15405.9 15661.4 18697.8 16114.5 20200.1 FALSE TRUE 17064.86072 18233.2001 16654.68992 17966.35186 18384.55804 18137.92006 18633.06889 17109.30518 17662.36973 16083.30853 1.061029246 1.133672221 1.035526359 1.117080595 1.143083091 1.127748064 1.158534567 1.063792636 1.098180122 1 13.9732766 -9.408029336 1.277709007 1.000329932 1.108878424 0.41224442 0.037629585 1.571732741 3.758736694 0.036509105 0.010969577 3.91E-10 9.408029336 0.108548492 LGKQT(ph)DQGSMQIPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 LGKQTDQGSMQIPSR 15 1 E9PQG4;A0A087WX83;A0A075B749;Q5VU43-6;Q5VU43-7;Q5VU43-13;Q5VU43-2;Q5VU43-3;Q5VU43;Q5VU43-4 E9PQG4 PDE4DIP Myomegalin 2 LGKQT(0.712)DQGS(0.293)MQIPS(0.994)R 63.488 0.024105 0 102.01 149.17 169.43 0 150.61 209.28 114.77 193.21 168.51 128.52 TRUE FALSE 103.4384547 165.4568851 126.655301 0 171.1256318 246.3928696 136.5470084 176.7956045 184.6961384 102.3275535 1.010856326 1.616933851 1.23774386 0 1.6723319 2.407883911 1.334410955 1.727741928 1.804950203 1 6.677050858 -6.954391508 24.99996426 1.720411159 1.007725066 0.30203351 0.508662105 158.7552953 87019.85635 0.15938166 0.180721746 1.11E-07 6.954391508 -0.712686093 LGLAVIHGEAQCTELDMDDGRHS(ph)PPMVK ddPTM_K562_Paclitaxel_30min_R1 1 LGLAVIHGEAQCTELDMDDGRHSPPMVK 28 1 C9JUN4;C9J168;B4DP31;Q14558;Q14558-2 C9JUN4 PRPSAP1 Phosphoribosyl pyrophosphate synthase-associated protein 1 1 LGLAVIHGEAQCT(0.026)ELDMDDGRHS(0.974)PPMVK 74.214 8.59E-05 29153000 1853.9 1497.3 2463.7 2007.9 1414.3 1142.8 1625.9 1934.8 1469 2406 TRUE FALSE 1879.86032 1660.780278 1841.708464 1879.122281 1606.951604 1345.459534 1934.406037 1770.426663 1610.104014 1915.655879 0.981314202 0.86695126 0.961398383 0.980928935 0.838851916 0.702349284 1.009787853 0.924188255 0.840497519 1 10.90362271 -2.000043956 0.698347542 0.893914742 9.768375697 0.047370915 0.090448854 1067.84323 5.697956396 0.036888778 14791.92324 0.009998988 2.000043956 8.874460955 LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASR ddPTM_K562_Paclitaxel_30min_R1 1 LGLGIDEDEVAAEEPNAAVPDEIPPLEGDEDASR 34 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 119.61 1.51E-17 6012100 972.68 859.33 844.13 981.08 631.81 637.15 592.82 820.99 469.66 960.19 FALSE TRUE 986.300521 953.1545555 631.0189414 918.15792 717.8732186 750.1396065 705.3045003 751.241775 514.7729415 764.5027509 1.290120303 1.246764062 0.825397869 1.200987071 0.939006717 0.981212436 0.922566334 0.982654116 0.673343478 1 9.578377883 -2.000000131 0.386165492 0.893879313 7.211439074 0.463110119 0.133636644 59.32237228 0.804647542 0.096266682 281.8719069 0.009999997 2.000000131 6.317559761 LGLPLLTDCAQPSRPHGS(ph)PSR ddPTM_K562_Paclitaxel_30min_R1 1 LGLPLLTDCAQPSRPHGSPSR 21 1 U3KQ90;P55199 U3KQ90 ELL RNA polymerase II elongation factor ELL 1 LGLPLLTDCAQPS(0.035)RPHGS(0.79)PS(0.175)R 81.643 0.0013925 395280000 801.8 786.37 1004 804.86 766.67 961.86 553.99 861.08 775.31 1366.4 TRUE FALSE 813.0276738 872.2285359 750.5277827 753.239882 871.1034338 1132.432366 659.1067105 787.9258793 849.7819897 1087.92693 0.747318272 0.801734484 0.689869661 0.692362567 0.800700313 1.040908479 0.605837297 0.724245221 0.781102082 1 10.08736595 -6.878543504 7.717995061 0.812328018 0.735005032 0.117703617 0.121378427 0.66279401 42.06719271 0.038734561 0.044017971 1.32E-07 6.878543504 -0.077322986 LGLS(ph)EMS(ph)RIEAATLT(ph)SMSWMPF ddPTM_K562_Paclitaxel_30min_R1 1 LGLSEMSRIEAATLTSMSWMPF 22 1 A6NER6 A6NER6 CALB2 3 LGLS(0.996)EMS(0.996)RIEAAT(0.179)LT(0.659)S(0.127)MS(0.043)WMPF 45.269 0.024109 17905000 846.9 734.75 895.18 705.58 745.37 723.59 696.09 753.32 750.07 977.45 TRUE FALSE 858.7592129 814.9724898 669.1807376 660.3272569 846.9020132 851.9085268 828.1694437 689.3207639 822.1175749 778.2451535 1.103455909 1.047192502 0.859858535 0.848482325 1.088220093 1.094653173 1.064149825 0.885737304 1.056373523 1 9.604080877 -5.529336246 24.9688613 0.986023935 1.089390111 0.149414673 0.088647094 268.0740662 1036550.403 0.024498068 0.065177795 2.96E-06 5.529336246 0.103366176 LGMLEER ddPTM_K562_Paclitaxel_30min_R1 1 LGMLEER 7 0 Q58A45-4;Q58A45 Q58A45-4 PAN3 PAB-dependent poly(A)-specific ribonuclease subunit PAN3 0 69.383 0.02884 0 1569.4 1085.3 2392.5 1924.6 1515.9 1514.3 1225.6 1292.5 1540.7 1755.2 FALSE TRUE 1591.376442 1203.796724 1788.483785 1801.16477 1722.391244 1782.839843 1458.151202 1182.694057 1688.691119 1397.489277 1.138739645 0.861399615 1.279783548 1.288857668 1.232489775 1.275744918 1.043407793 0.846299201 1.20837501 1 10.4486215 -11.18710808 5.259643448 0.999993212 1.128037472 0.058540414 0.156786741 1.33E-05 2.06E-06 0.16215958 0.03932739 6.50E-12 11.18710808 0.12804426 LGMLKPHCT(ph)VSFGLLS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 LGMLKPHCTVSFGLLSR 17 1 A2RRE0;Q9Y4E6-2;Q9Y4E6 A2RRE0 WDR7 WD repeat-containing protein 7 2 LGMLKPHCT(0.995)VS(0.009)FGLLS(0.996)R 66.264 0.025635 7120500 3432.4 3082.4 2857.9 3241.4 3020.5 2476.6 2618.3 3350.7 2987.1 3304.2 TRUE FALSE 3480.46419 3418.946856 2136.387799 3033.511112 3431.943237 2915.790237 3115.108757 3066.037121 3274.024302 2630.802226 1.322966871 1.299583383 0.812067048 1.153074557 1.304523466 1.108327417 1.184090817 1.16543809 1.244496553 1 11.36128708 -11.69438893 2.4812375 0.970229618 1.170906159 0.124516574 0.140054537 27074169.75 20711775.56 5045419.965 0.037063938 2.02E-12 11.69438893 0.200676541 LGMLS(ph)PEGTCK ddPTM_K562_Paclitaxel_30min_R1 1 LGMLSPEGTCK 11 0 A0A0U1RQF0;P49327 A0A0U1RQF0 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 LGMLS(1)PEGTCK 126.12 0.0016732 16955000 2139.5 1846 2886.9 2012.7 1482.7 1346.5 1358.6 2200.2 1649.8 2563 TRUE FALSE 2169.459601 2047.552523 2158.06639 1883.614431 1684.668842 1585.282869 1616.387258 2013.279277 1808.270662 2040.659193 1.06311706 1.003377992 1.057533956 0.923042141 0.825551296 0.77684842 0.792090744 0.986582808 0.886120851 1 10.99481955 -6.413122179 3.782458461 0.868039769 1.037061681 0.511043283 0.070900517 0.196398341 5.006279428 0.021647914 0.03288201 3.86E-07 6.413122179 0.169021912 LGNAGDVCVPQAS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 LGNAGDVCVPQASPR 15 0 Q9H0W5 Q9H0W5 CCDC8 Coiled-coil domain-containing protein 8 1 LGNAGDVCVPQAS(1)PR;LGNAGDVCVPQAS(1)PR;LGNAGDVCVPQAS(1)PR 222.09 4.31E-26 182392000 4520.28 4499.4 6303.4 5380.8 4051.2 4193.71 4336.4 5020.1 3308.28 5997.1 TRUE FALSE 4583.577866 4990.659708 4712.028711 5035.699572 4603.042027 4937.405586 5159.209262 4593.611171 3626.055076 4774.887728 0.959934165 1.045188912 0.986835498 1.054621566 0.964010525 1.034035954 1.080488078 0.96203543 0.759401117 1 12.2212511 -8.530892446 24.98507779 0.873373067 1.017948578 0.415162082 0.065210376 159.5714305 497497.0926 0.039937556 0.01514923 2.95E-09 8.530892446 0.144575511 LGNAGDVCVPQAS(ph)PRR ddPTM_K562_Paclitaxel_30min_R1 2 LGNAGDVCVPQASPRR 16 1 Q9H0W5 Q9H0W5 CCDC8 Coiled-coil domain-containing protein 8 1 LGNAGDVCVPQAS(1)PRR;LGNAGDVCVPQAS(1)PRR 169.43 8.99E-08 93371000 4492.5 3958 5292.8 4444.1 4047.2 3874.1 3658.8 4002.2 3239.9 5383 TRUE FALSE 4555.408861 4390.147825 3956.567179 4159.075317 4598.49716 4561.11724 4353.0382 3662.188129 3551.106871 4285.941645 1.062872348 1.024313485 0.923150035 0.970399427 1.072925751 1.064204233 1.015655032 0.854465234 0.828547648 1 12.06539649 -8.253791533 24.11306674 0.881129829 1.017521311 0.471024663 0.060073036 290.2089745 915011.1664 0.03002289 0.016885818 5.57E-09 8.253791533 0.136391483 LGNSGAS(ph)PSSAGK ddPTM_K562_Paclitaxel_30min_R1 1 LGNSGASPSSAGK 13 0 Q8IWI9-3;Q8IWI9 Q8IWI9-3 MGA MAX gene-associated protein 1 LGNS(0.005)GAS(0.931)PS(0.032)S(0.032)AGK 102.29 0.0074827 15957000 1269.4 1170.1 2387 1350 1091 880.66 937.99 1206.8 1268.1 1542.9 TRUE FALSE 1287.175516 1297.855475 1784.372328 1263.417042 1239.612671 1036.832686 1115.968706 1104.274807 1389.906671 1228.456133 1.047799333 1.056493138 1.452532394 1.028459225 1.009081755 0.844012788 0.908431873 0.89891269 1.131425562 1 10.26263063 -6.508461269 23.62907431 0.957476859 1.183996626 0.376378043 0.126632146 333.6694171 546856.8663 0.036926642 0.052445437 3.10E-07 6.508461269 0.226519767 LGPATGPPGPSAS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 2 LGPATGPPGPSASPTR 16 0 Q9ULC8-2;Q9ULC8 Q9ULC8-2 ZDHHC8 Probable palmitoyltransferase ZDHHC8 1 LGPATGPPGPS(0.102)AS(0.85)PT(0.048)R;LGPATGPPGPSAS(0.5)PT(0.5)R 147.53 7.39E-08 42403000 1532.62 1637.87 2111.76 2037.65 1388.26 1534.09 1509.95 1806.79 1400.58 2600.7 TRUE FALSE 1554.081409 1816.698186 1578.62007 1906.964249 1577.364515 1806.139322 1796.45513 1653.291912 1535.111967 2070.675912 0.7505189 0.877345496 0.762369457 0.920938056 0.761763106 0.872246261 0.867569434 0.798431035 0.74135791 1 11.01588606 -12.30913655 2.326204828 1.936950658 0.821125936 0.449551938 0.060607762 3481464.422 583188.4573 17165484.38 0.014696217 4.91E-13 12.30913655 -1.115824722 LGPELSPSPT(ph)SPTATSTTPSR ddPTM_K562_Paclitaxel_30min_R1 1 LGPELSPSPTSPTATSTTPSR 21 0 M0QY76;P26651 M0QY76 ZFP36 Tristetraprolin 1 LGPELSPS(0.002)PT(0.491)S(0.491)PT(0.01)AT(0.001)S(0.002)T(0.002)TPSR 95.365 0.0015472 7681000 662.02 938.32 1044.6 837.65 770.52 807.64 598.01 860.25 820.29 928.18 TRUE FALSE 671.2903225 1040.768951 780.8778106 783.9268782 875.477869 950.8636142 711.4792757 787.166393 899.0825197 739.0164065 0.908356454 1.408316435 1.056644756 1.060770602 1.184652819 1.286661035 0.962738133 1.065154151 1.21659345 1 9.529462583 -14.99996619 0.268439335 0.107313943 1.141121167 0.059560956 0.143385781 616.967482 6.014482562 305.0103065 0.174131465 1.00E-15 14.99996619 1.033807224 LGPELSPSPTSPTATSTTPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 LGPELSPSPTSPTATSTTPSR 21 0 M0QY76;P26651 M0QY76 ZFP36 Tristetraprolin 1 LGPELS(0.022)PS(0.062)PT(0.199)S(0.199)PT(0.023)AT(0.026)S(0.026)T(0.076)T(0.026)PS(0.34)R 69.975 0.0085351 9597200 767.22 1189.8 924.35 970.22 912.87 847.32 844.3 746.22 852.9 1041.9 TRUE FALSE 777.9634471 1319.706388 690.9864103 907.9944317 1037.218349 997.580305 1004.501517 682.8239532 934.8248559 829.5602081 0.937802271 1.59085064 0.832955105 1.094549163 1.25032317 1.202541172 1.210884403 0.823115606 1.126892113 1 9.696202883 -8.236301118 24.72752553 0.981252843 1.16657451 0.138491744 0.20141425 1197.220281 1177661.219 0.091037422 0.052530784 5.80E-09 8.236301118 0.185321668 LGPGRPLPTFPTS(ph)ECTSDVEPDTREMVR ddPTM_K562_Paclitaxel_30min_R1 1 LGPGRPLPTFPTSECTSDVEPDTREMVR 28 2 Q8TDD1-2;Q8TDD1 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 LGPGRPLPT(0.001)FPT(0.075)S(0.308)ECT(0.308)S(0.308)DVEPDTREMVR 57.692 0.0016486 16032000 367.43 209.89 435.42 386.8 265.06 354.12 330.75 418.23 603.23 449.1 TRUE FALSE 372.5751536 232.8065 325.4928358 361.9923793 301.1656595 416.9182099 393.5080859 382.698751 661.1729368 357.5731735 1.041954993 0.651073731 0.910283153 1.012358885 0.842249033 1.165966132 1.100496668 1.070266953 1.849056321 1 8.482094694 -7.769728646 1.02119791 1.349126745 0.87460965 0.358209701 0.237466297 0.563977323 1.159331824 0.166860918 0.094158503 1.70E-08 7.769728646 -0.474517095 LGPGRPLPTFPTSECT(ph)SDVEPDTR ddPTM_K562_Paclitaxel_30min_R1 1 LGPGRPLPTFPTSECTSDVEPDTR 24 1 Q8TDD1-2;Q8TDD1;H0YHZ9 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 LGPGRPLPTFPT(0.005)S(0.052)ECT(0.471)S(0.471)DVEPDTR 86.701 0.0013055 80895000 819.01 698.97 1048.5 1003.1 750.55 640.74 642.62 1013.8 896.81 1183.6 TRUE FALSE 830.4786669 775.2859084 783.7932073 938.7656557 852.7876169 754.3662426 764.5537903 927.6713621 982.9526076 942.3816703 0.881255115 0.822687806 0.831715251 0.996162898 0.90492806 0.800489087 0.811299513 0.984390286 1.043051492 1 9.880167668 -8.406829073 5.052795871 1.019187542 0.865851999 0.598544516 0.054886922 0.169643641 6.284528663 0.034761363 0.015899779 3.92E-09 8.406829073 -0.153335543 LGPGRPLPTFPTSECTS(ph)DVEPDTR ddPTM_K562_Paclitaxel_30min_R1 3 LGPGRPLPTFPTSECTSDVEPDTR 24 1 Q8TDD1-2;Q8TDD1;H0YHZ9 Q8TDD1-2 DDX54 ATP-dependent RNA helicase DDX54 1 LGPGRPLPTFPTS(0.002)ECT(0.037)S(0.961)DVEPDTR;LGPGRPLPTFPT(0.002)S(0.006)ECT(0.222)S(0.77)DVEPDTR;LGPGRPLPT(0.001)FPT(0.006)S(0.052)ECT(0.175)S(0.766)DVEPDTR 122.53 5.31E-10 586973000 1921.94 2177.9 2465.51 1997.8 1606.58 1773.38 1637.18 2595.31 2221.5 2432.29 TRUE FALSE 1948.85309 2415.690487 1843.061507 1869.67005 1825.423396 2087.864044 1947.826358 2374.822216 2434.885001 1936.587963 1.006333369 1.247395178 0.951705547 0.965445456 0.942597719 1.078114748 1.005803194 1.226291943 1.25730669 1 10.91930132 -8.256621537 24.97145109 1.181349491 1.0299017 0.247235132 0.104562092 495.2315514 2566859.655 0.051462717 0.028491177 5.54E-09 8.256621537 -0.15144779 LGRGSVSDCS(ph)DGTSELEEPLGEDPR ddPTM_K562_Paclitaxel_30min_R1 1 LGRGSVSDCSDGTSELEEPLGEDPR 25 1 P50548;P50548-2 P50548 ERF ETS domain-containing transcription factor ERF 1 LGRGS(0.299)VS(0.109)DCS(0.314)DGT(0.207)S(0.071)ELEEPLGEDPR 61.736 0.004493 9485200 473.87 376.64 438.78 458.28 273.97 596.14 315.42 423.77 503.03 945.44 TRUE FALSE 480.505642 417.7628289 328.0045622 428.887972 311.2893524 701.8570588 375.2692984 387.7680934 551.3482791 752.758809 0.638326163 0.554975676 0.435736598 0.569754836 0.413531331 0.932379735 0.498525283 0.515129267 0.732436834 1 9.556043876 -12.36684836 0.261224921 1.584086499 0.531621479 0.456373148 0.140519792 36.91246155 1.229426504 12.61195248 0.197566362 4.30E-13 12.36684836 -1.052465019 LGS(ph)FGSITR ddPTM_K562_Paclitaxel_30min_R1 3 LGSFGSITR 9 0 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 1 LGS(0.755)FGS(0.195)IT(0.05)R;LGS(0.871)FGS(0.128)IT(0.001)R;LGS(0.998)FGS(0.002)ITR 139.15 0.00089783 534245000 6368.9 5789.9 8306.7 6641.9 5292.7 5620.9 5198.4 7284.1 4928.2 9152.1 TRUE FALSE 6458.08425 6422.060862 6209.570849 6215.918262 6013.655346 6617.687694 6184.769263 6665.270239 5401.57563 7286.896996 0.886259851 0.881316267 0.852155705 0.853026777 0.825269707 0.908162651 0.848752118 0.914692529 0.741272401 1 12.83108888 -7.265517175 24.50593339 0.875130228 0.860032428 0.02578985 0.062708012 1862.072751 11190266.69 0.020442203 0.018782329 5.43E-08 7.265517175 -0.0150978 LGS(ph)PVDNLEDMDRDDLTDDSVFTR ddPTM_K562_Paclitaxel_30min_R1 2 LGSPVDNLEDMDRDDLTDDSVFTR 24 1 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 LGS(0.998)PVDNLEDMDRDDLT(0.002)DDSVFTR;LGS(1)PVDNLEDMDRDDLTDDSVFTR 80.56 0.00019945 48259000 760.87 707.01 1210.62 967.82 825.9 1091.83 782 953.24 770.06 1085.23 TRUE FALSE 771.5245275 784.2037428 904.9840082 905.748357 938.4015626 1285.45072 930.3804177 872.2563121 844.0277037 864.0595303 0.892906681 0.907580688 1.047363031 1.048247633 1.086038091 1.487687683 1.076754998 1.009486362 0.976816613 1 9.754986902 -5.904928844 1.530583731 1.117468814 0.877912535 0.239526051 0.137315789 0.675855238 2.885065793 0.04530692 0.170671749 1.24E-06 5.904928844 -0.239556279 LGSAS(ph)S(ph)S(ph)HGS(ph)IQES(ph)HKASR ddPTM_K562_Paclitaxel_30min_R1 1 LGSASSSHGSIQESHKASR 19 1 Q16566 Q16566 CAMK4 Calcium/calmodulin-dependent protein kinase type IV 5 LGS(0.044)AS(0.972)S(0.993)S(0.993)HGS(0.998)IQES(0.637)HKAS(0.364)R 52.483 0.024218 18497000 636.5 822.65 701.82 952.58 781.67 564.58 603.58 891.07 636.54 1039.3 TRUE FALSE 645.4129638 912.469709 524.636861 891.4857824 888.1466878 664.7003359 718.1061541 815.3680416 697.6825111 827.4900895 0.779964584 1.102695634 0.634009842 1.077337111 1.073301903 0.803272866 0.867812392 0.985350824 0.843130957 1 9.692598223 -4.952830148 15.4236345 0.926014922 9.03E-05 0.094790011 0.13978281 3802272.221 34404839.27 0.033428453 102396326.4 1.11E-05 4.952830148 -0.925924593 LGSFGS(ph)ITR ddPTM_K562_Paclitaxel_30min_R1 1 LGSFGSITR 9 0 Q14315-2;Q14315 Q14315-2 FLNC Filamin-C 1 LGS(0.006)FGS(0.752)IT(0.242)R 102.53 0.0099152 9898000 1044.5 768.9 1287.2 1078.8 1073.4 981.1 872.54 960.89 993.53 1241 TRUE FALSE 1059.126223 852.8511023 962.2304401 1009.610597 1219.615253 1155.08431 1038.09991 879.2563968 1088.962996 988.0835188 1.071899493 0.863136654 0.973835128 1.021786699 1.234324052 1.169014853 1.050619599 0.889860402 1.102096103 1 9.948489182 -4.91464321 20.75954145 1.034955813 3.25746123 0.010813207 0.108709829 5738.983969 1406416.501 0.028772794 4570.692739 1.22E-05 4.91464321 2.222505417 LGSGGS(ph)GDGPSVSWSR ddPTM_K562_Paclitaxel_30min_R1 1 LGSGGSGDGPSVSWSR 16 0 Q9Y6R9-2;Q9Y6R9 Q9Y6R9-2 CCDC61 Coiled-coil domain-containing protein 61 1 LGS(0.008)GGS(0.981)GDGPS(0.011)VSWSR 98.408 0.0044603 0 512.25 526.17 942.13 927.76 771.78 704.51 579.3 619.54 671.77 678.36 TRUE FALSE 519.4230804 583.61902 704.2776294 868.2576261 876.9095023 829.4449567 689.2191509 566.90621 736.29651 540.1098596 0.961698942 1.080556131 1.303952551 1.607557445 1.623576179 1.535696751 1.276072152 1.049612778 1.363234714 1 9.077109075 -8.973903455 0.966480718 1.026015119 1.348741137 0.14379059 0.221072611 1.206932173 2.547741075 0.238227889 0.081276556 1.06E-09 8.973903455 0.322726018 LGSLSARS(ph)DSEATISR ddPTM_K562_Paclitaxel_30min_R1 3 LGSLSARSDSEATISR 16 1 H0Y2V6;Q5SW79-2;Q5SW79-3;Q5SW79;H0Y4T4 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 LGS(0.016)LS(0.134)ARS(0.81)DS(0.041)EATISR;LGS(0.006)LS(0.024)ARS(0.954)DS(0.004)EAT(0.012)ISR;LGSLS(0.002)ARS(0.809)DS(0.189)EATISR 227.09 1.48E-30 346427000 3690.12 3304.71 4187 4171.62 3175.32 3455 3306.77 3682.79 4791.7 4171.05 TRUE FALSE 3741.793065 3665.529414 3129.940066 3904.070965 3607.852343 4067.695739 3934.212345 3369.914002 5251.964195 3320.98772 1.1267109 1.103746753 0.94247264 1.175575248 1.086379308 1.224845161 1.184651277 1.014732449 1.581446436 1 11.69739667 -7.022095651 1.362240261 1.204351098 1.069597891 0.109472703 0.158987562 0.953464178 3.64501321 0.065114527 0.0719712 9.50E-08 7.022095651 -0.134753208 LGSLSARSDS(ph)EATISR ddPTM_K562_Paclitaxel_30min_R1 2 LGSLSARSDSEATISR 16 1 H0Y2V6;Q5SW79-2;Q5SW79-3;Q5SW79;H0Y4T4 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 LGS(0.001)LS(0.059)ARS(0.059)DS(0.861)EAT(0.019)ISR;LGSLS(0.003)ARS(0.429)DS(0.549)EAT(0.018)IS(0.001)R 124.04 0.00025587 13053500 2780.8 2462.8 3313.2 2681 2156.1 2326.4 2431 2697.9 3767.6 3542.1 TRUE FALSE 2819.73978 2731.696833 2476.741683 2509.05266 2449.797323 2738.954376 2892.269559 2468.696555 4129.494814 2820.218076 0.999830405 0.968611916 0.878209279 0.889666186 0.86865528 0.971185313 1.025548196 0.875356617 1.46424663 1 11.46159101 -8.738355495 24.99983298 1.232123624 0.934435479 0.510377109 0.116551394 146.536259 158699.6192 0.072944996 0.027532593 1.83E-09 8.738355495 -0.297688145 LGSPVDNLEDMDRDDLT(ph)DDSVFTR ddPTM_K562_Paclitaxel_30min_R1 1 LGSPVDNLEDMDRDDLTDDSVFTR 24 1 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 LGS(0.404)PVDNLEDMDRDDLT(0.543)DDS(0.052)VFTR 81.89 0.00147 29934000 384.23 362.98 507.74 451.51 317.61 346.23 346.72 469.19 246.9 423.49 TRUE FALSE 389.6104055 402.6113839 379.5547574 422.5521695 360.8738592 407.6290292 412.50831 429.3293809 270.6158482 337.1825055 1.155488197 1.194045887 1.125665629 1.25318533 1.070262701 1.208926983 1.223397724 1.273284865 0.802579742 1 8.397385875 -8.760012134 25 0.901289825 1.186275215 0.718361011 0.071810145 17.78162413 311515.3536 0.05231034 0.017323798 1.74E-09 8.760012134 0.284985391 LGSQPIRAS(ph)NPDLR ddPTM_K562_Paclitaxel_30min_R1 5 LGSQPIRASNPDLR 14 1 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 LGSQPIRAS(1)NPDLR;LGSQPIRAS(1)NPDLR;LGSQPIRAS(1)NPDLR;LGSQPIRAS(1)NPDLR;LGSQPIRAS(1)NPDLR 188 4.10E-06 466606000 14924.2 13669.4 18256.3 15059.5 13291.3 12649.2 13616.4 16144.8 16843.3 17719.6 TRUE FALSE 15133.18485 15161.87132 13647.27127 14093.65107 15101.80008 14892.35802 16200.04082 14773.19847 18461.17422 14108.33579 1.072641385 1.074674685 0.967319709 0.998959146 1.07041683 1.05557156 1.148260224 1.047125521 1.308529545 1 13.7842602 -7.57507733 1.620634891 1.133743314 1.030391028 0.205111933 0.08175328 0.564627452 3.01333159 0.039505326 0.028129586 2.66E-08 7.57507733 -0.103352287 LGSQPIRAS(ph)NPDLRR ddPTM_K562_Paclitaxel_30min_R1 2 LGSQPIRASNPDLRR 15 2 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 LGSQPIRAS(1)NPDLRR;LGSQPIRAS(1)NPDLRR 84.734 0.00952 107340000 4690.4 4426.6 5902.4 4508.4 4341 3749.9 4268.3 4588.8 5426 4911.4 TRUE FALSE 4756.080071 4909.911158 4412.26612 4219.251403 4932.317694 4414.892114 5078.187643 4198.952798 5947.191544 3910.453984 1.216247548 1.25558597 1.1283258 1.078967153 1.261315876 1.128997332 1.298618438 1.073776297 1.520844272 1 11.93312039 -7.747425246 24.99221462 1.229457803 1.178750645 0.023564361 0.139885097 1047.530933 1868123.92 0.050363811 0.038813129 1.79E-08 7.747425246 -0.050707158 LGSSGLGS(ph)ASSIQAAVR ddPTM_K562_Paclitaxel_30min_R1 1 LGSSGLGSASSIQAAVR 17 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 LGS(0.271)S(0.191)GLGS(0.478)AS(0.016)S(0.044)IQAAVR 121.51 9.81E-05 20977000 1562.3 1248.9 1353.8 1475.8 1316.8 1444.8 1269.4 1658.7 1558.1 1572.2 TRUE FALSE 1584.17702 1385.259126 1012.016446 1381.148793 1496.170454 1701.014994 1510.262023 1517.783082 1707.762467 1251.784777 1.265534658 1.106627234 0.808458822 1.103343657 1.195229788 1.358871769 1.20648697 1.212495238 1.364262051 1 10.28977082 -6.759745703 3.70865585 1.242471021 1.05072427 0.215434116 0.141100554 0.303059809 8.991673782 0.044443144 0.054880395 1.74E-07 6.759745703 -0.191746751 LGSSGLGSASS(ph)IQAAVR ddPTM_K562_Paclitaxel_30min_R1 2 LGSSGLGSASSIQAAVR 17 0 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7;H0Y659 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 LGSSGLGS(0.066)AS(0.087)S(0.847)IQAAVR;LGS(0.046)S(0.003)GLGS(0.265)AS(0.029)S(0.656)IQAAVR 201.04 1.33E-13 70538000 1917.15 1572.81 1922.74 1387.32 1305.55 1324.7 1450.65 1699.25 1631.96 2050.21 TRUE FALSE 1943.996015 1744.534715 1437.320507 1298.343505 1483.388013 1559.616945 1725.903265 1554.888106 1788.71705 1632.376077 1.190899599 1.068708822 0.880508191 0.795370334 0.908729327 0.95542747 1.057295123 0.952530565 1.095775095 1 10.67275776 -10.16280147 13.85145141 1 0.980420688 0 0.110490179 0 0 0.115490354 0.028010525 6.87E-11 10.16280147 -0.019579312 LGSVDS(ph)FER ddPTM_K562_Paclitaxel_30min_R1 1 LGSVDSFER 9 0 A0A3B3IRT3;O60343-2;O60343-3;O60343;Q5JU47 A0A3B3IRT3 TBC1D4 TBC1 domain family member 4 1 LGS(0.001)VDS(0.999)FER 104.82 0.008835 4234800 770.12 699.16 1472.7 710.91 913.08 807.19 499.63 1032.6 592.78 953.55 TRUE FALSE 780.904056 775.4966532 1100.898671 665.3154145 1037.456955 950.333813 594.4321843 944.8741847 649.7191676 759.2159866 1.028566402 1.021444051 1.450046746 0.876319027 1.366484601 1.251730509 0.782955305 1.244539369 0.855776458 1 9.568366561 -7.731008864 24.99985383 0.991195604 1.168094017 0.19150562 0.194401952 367.3622928 301802.0805 0.071474063 0.055356922 1.86E-08 7.731008864 0.176898414 LGTLS(ph)PAFSTR ddPTM_K562_Paclitaxel_30min_R1 1 LGTLSPAFSTR 11 0 Q7KZF4 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 1 LGT(0.004)LS(0.996)PAFSTR 136.93 0.00077789 19933000 586.86 567.65 1122.1 1014.7 821.07 747.1 677.08 663.32 905.45 1108.6 TRUE FALSE 595.0778506 629.6279467 838.811977 949.6216836 932.9136348 879.5876952 805.5523954 606.9668257 992.4225182 882.6667115 0.674181821 0.713324677 0.950315636 1.075855327 1.05692627 0.996511689 0.912634843 0.687651203 1.124345696 1 9.785724979 -5.753140288 4.598491038 0.97079279 0.685073648 0.501189003 0.112813531 0.158636102 8.314640623 0.030964529 0.079454503 1.77E-06 5.753140288 -0.285719142 LGVIEDHSNR ddPTM_K562_Paclitaxel_30min_R1 3 LGVIEDHSNR 10 0 P14625;Q58FF3 P14625 HSP90B1;HSP90B2P Endoplasmin;Putative endoplasmin-like protein 0 ;; 144.77 0.0011407 76830000 11226.6 11116.4 13448.2 11214.9 9886 10070.8 10386.5 12858 11340.6 13255.4 FALSE TRUE 11383.80704 12330.12615 10053.03558 10495.62651 11232.64057 11856.71498 12357.28415 11765.63264 12429.9153 10553.9422 1.078630792 1.168295781 0.952538435 0.994474511 1.064307569 1.123439446 1.170869038 1.114809274 1.177750935 1 13.36549437 -7.222085584 4.322925409 1.128318792 1.048318455 0.176222425 0.069545927 0.34509138 14.77448385 0.024502329 0.023785082 6.00E-08 7.222085584 -0.080000336 LGVSVS(ph)PSR ddPTM_K562_Paclitaxel_30min_R1 4 LGVSVSPSR 9 0 E7ERS3;Q86VM9;H3BP01 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 LGVS(0.046)VS(0.948)PS(0.006)R;LGVS(0.012)VS(0.981)PS(0.007)R;LGVS(0.009)VS(0.991)PSR;LGVS(0.048)VS(0.944)PS(0.008)R 152.04 0.00013294 5943830000 12240.5 10977.9 14788.8 12188.5 10967.4 10004 9995 12155.4 9947.3 12529.2 TRUE FALSE 12411.90477 12176.50425 11055.18453 11406.78416 12461.34556 11778.06894 11891.49907 11122.7229 10902.78261 9975.742163 1.244208658 1.220611364 1.108206723 1.143452184 1.24916476 1.180670946 1.192041542 1.114976983 1.092929472 1 13.28420846 -8.850368776 1.15986454 1.002749849 1.190717793 0.684430385 0.041646635 0.282073155 0.825305183 0.042016786 0.013606577 1.41E-09 8.850368776 0.187967944 LGVSVSPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 LGVSVSPSR 9 0 E7ERS3;Q86VM9;H3BP01 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 LGVSVS(0.036)PS(0.964)R 108.31 0.0071594 220210000 2254.4 1887.8 2610.4 2245 2242.4 1959.6 1997.5 2131.7 2019.7 2493.9 TRUE FALSE 2285.968555 2093.916388 1951.372235 2101.015748 2547.852844 2307.107546 2376.515197 1950.598779 2213.701209 1985.641811 1.151249205 1.054528756 0.98274131 1.058104103 1.283138192 1.161895128 1.196849897 0.982351786 1.114854249 1 10.95538968 -3.203822044 16.40494869 1.102131862 94.46806699 0 0.095455542 0 0 0.022968064 0 0.000625429 3.203822044 93.36593513 LGVSVSPS(ph)RAR ddPTM_K562_Paclitaxel_30min_R1 1 LGVSVSPSRAR 11 1 E7ERS3;Q86VM9;H3BP01 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 LGVS(0.026)VS(0.003)PS(0.972)RAR 82.515 0.022088 41378000 1817.6 1454.6 1797.6 1707.5 1385.2 1639.5 1399 1603.2 6994.9 1406.4 TRUE FALSE 1843.052008 1613.418147 1343.773648 1597.988592 1573.887692 1930.242305 1664.452947 1466.998153 7666.791399 1119.774908 1.645912937 1.44084149 1.200039077 1.427062333 1.405539346 1.723777066 1.486417435 1.310083074 6.846725484 1 10.12899304 LGYLPVQTVLEGDNLETPSQS(ph)PQLFHDDTHSR ddPTM_K562_Paclitaxel_30min_R1 2 LGYLPVQTVLEGDNLETPSQSPQLFHDDTHSR 32 0 Q5JT44;Q5JT49;H0Y337 Q5JT44 UTRN 1 LGYLPVQTVLEGDNLET(0.001)PS(0.054)QS(0.942)PQLFHDDT(0.003)HSR;LGYLPVQTVLEGDNLET(0.048)PS(0.474)QS(0.476)PQLFHDDT(0.001)HSR 88.479 2.69E-08 18084100 4430.8 4999.8 5363.8 4836 4123.6 4194.3 5018.4 6111.8 3916.3 6171.3 TRUE FALSE 4492.84487 5545.695072 4009.642351 4525.840605 4685.304133 4938.100214 5970.615202 5592.564441 4292.478113 4913.585673 0.914371941 1.128645238 0.816031839 0.921087146 0.953540743 1.004989135 1.215123863 1.138183969 0.873593827 1 12.2625605 -7.527291982 24.94708471 1.074214427 0.951266229 0.173963298 0.110332574 200.748352 1134768.3 0.04235348 0.0329413 2.97E-08 7.527291982 -0.122948198 LGYLVS(ph)PPQQIR ddPTM_K562_Paclitaxel_30min_R1 1 LGYLVSPPQQIR 12 0 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 LGYLVS(1)PPQQIR 98.902 0.010335 73479000 2108.8 1825.6 2958.3 2104.8 1767.2 1530.7 1774.5 2091.1 1697.2 2247.3 TRUE FALSE 2138.329706 2024.925182 2211.440577 1969.807549 2007.922559 1802.148153 2111.202111 1913.448003 1860.223643 1789.299026 1.195065595 1.131686293 1.235925658 1.100882256 1.1221839 1.007181095 1.179904577 1.069384141 1.039638214 1 10.80517879 -3.16068705 0.112655147 0.940974911 1.596235069 0.525841032 0.052405957 65.69856234 0.67389117 0.50029517 6.568028923 0.000690737 3.16068705 0.655260158 LHAEFAAERDWEQFHQPR ddPTM_K562_Paclitaxel_30min_R1 2 LHAEFAAERDWEQFHQPR 18 1 Q9H773 Q9H773 DCTPP1 dCTP pyrophosphatase 1 0 ; 107.69 0.00075953 20900300 2188.06 2182.1 2855.1 2926.8 2443.02 2645.5 2394.65 2595 2489.1 3254.8 FALSE TRUE 2218.699591 2420.349057 2134.294694 2739.088148 2775.800685 3114.64228 2849.022337 2374.538553 2728.189177 2591.469973 0.856154852 0.933967625 0.823584574 1.056963104 1.071129789 1.20188245 1.09938466 0.916290205 1.052757394 1 11.33955496 -6.273650438 23.50755322 1.061829603 0.877508884 0.577432374 0.072645509 251.5168503 484195.7279 0.022078829 0.033070541 5.33E-07 6.273650438 -0.184320719 LHDFGYR ddPTM_K562_Paclitaxel_30min_R1 2 LHDFGYR 7 0 A0A0C4DFS8;P43490 A0A0C4DFS8 NAMPT Nicotinamide phosphoribosyltransferase 0 ; 148.21 2.92E-08 20853200 3141.1 2777 3388.5 3345.8 2899 2705.3 2961.7 3047 3089.5 4027.9 FALSE TRUE 3185.085091 3080.202251 2533.031267 3131.215363 3293.89288 3185.046971 3523.667114 2788.138331 3386.260279 3207.011769 0.993162894 0.960458668 0.789841587 0.976365411 1.027090986 0.993151008 1.098738442 0.869388244 1.055892689 1 11.64701393 -6.508490303 24.53656275 1.004432657 0.913087924 0.240599428 0.073678139 755.7737054 1288818.613 0.020800256 0.029578273 3.10E-07 6.508490303 -0.091344732 LHDFLAHSSEES(ph)EETSSPPR ddPTM_K562_Paclitaxel_30min_R1 1 LHDFLAHSSEESEETSSPPR 20 0 P46100-4;P46100;A0A096LNW1;A0A096LNL9;P46100-6;A0A087WWG0 P46100-4 ATRX Transcriptional regulator ATRX 1 LHDFLAHSSEES(0.314)EET(0.229)S(0.229)S(0.229)PPR 90.884 0.00073368 8965300 473.66 543.21 877.04 376.32 505.65 410.36 532.95 505.55 376.06 659.59 TRUE FALSE 480.2927014 602.5195048 655.6204049 352.1845195 574.5280907 483.1315843 634.0744803 462.600372 412.1822433 525.1651959 0.914555468 1.147295193 1.248407949 0.670616641 1.093994985 0.919961163 1.207381002 0.880866393 0.784862071 1 9.036627498 -7.000937471 0.460286498 0.926014243 1.069774372 0.042881457 0.173959684 4.707929937 2.00190511 0.163773491 0.300439948 9.98E-08 7.000937471 0.143760129 LHDFLAHSSEESEETS(ph)SPPR ddPTM_K562_Paclitaxel_30min_R1 3 LHDFLAHSSEESEETSSPPR 20 0 P46100-4;P46100;A0A096LNW1;A0A096LNL9;P46100-6;A0A087WWG0 P46100-4 ATRX Transcriptional regulator ATRX 1 LHDFLAHSSEES(0.002)EET(0.166)S(0.416)S(0.416)PPR;LHDFLAHSSEES(0.123)EET(0.095)S(0.391)S(0.391)PPR;LHDFLAHSSEES(0.009)EET(0.135)S(0.428)S(0.428)PPR 116.45 5.26E-05 35350100 1952.73 2058.62 2438.12 2268.89 2212.06 2290.36 2140.33 2240.1 1608.58 2746.9 TRUE FALSE 1980.074245 2283.387093 1822.586452 2123.373551 2513.380022 2696.523188 2546.446444 2049.789523 1763.091296 2187.080272 0.905350512 1.044034425 0.833342276 0.970871338 1.149194227 1.232932884 1.164313206 0.93722647 0.806139271 1 11.09479046 -5.253978818 22.32831951 1.021938835 0.905350253 0.056927813 0.13186152 702.8591734 2103299.448 0.036504708 0.345264254 5.57E-06 5.253978818 -0.116588582 LHEEGIIYR ddPTM_K562_Paclitaxel_30min_R1 2 LHEEGIIYR 9 0 A0A140T936;P26640;P26640-2 A0A140T936 VARS Valine--tRNA ligase 0 ; 156.35 1.14E-25 8036400 2898.5 2599.72 4120.9 3746.2 2862.5 2725.6 2484.77 3252.3 2793.8 3606.3 FALSE TRUE 2939.087943 2883.566221 3080.527828 3505.935499 3252.420963 3208.946891 2956.242136 2975.996815 3062.156973 2871.33408 1.023596649 1.00426009 1.072855942 1.221012742 1.132721192 1.11758047 1.029570943 1.036450908 1.066457921 1 11.48750548 -10.37918618 8.898593244 1.00000465 1.080234496 0.126987922 0.061380845 0 0 0.066930877 0.016233122 4.18E-11 10.37918618 0.080229845 LHELRIARLRQEER ddPTM_K562_Paclitaxel_30min_R1 2 LHELRIARLRQEER 14 3 Q9BYN8 Q9BYN8 MRPS26 "28S ribosomal protein S26, mitochondrial" 0 ; 76.357 0.01425 24141700 6436.1 5445.3 9696.6 7451.9 5908.4 5312.1 5139.5 7473.8 4838 9387.7 FALSE TRUE 6526.225257 6039.836269 7248.573404 6973.968487 6713.22411 6254.126349 6114.693295 6838.85404 5302.711517 7474.481587 0.873134167 0.808060893 0.969776073 0.933037082 0.898152471 0.836730451 0.818075906 0.914960317 0.709442047 1 12.86775781 -7.25269646 22.27248653 0.8481664 0.897630908 0.057234313 0.07929515 392.8962569 1000896.425 0.025513306 0.025067011 5.59E-08 7.25269646 0.049464507 LHGELQDR ddPTM_K562_Paclitaxel_30min_R1 2 LHGELQDR 8 0 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 0 ; 148.99 2.45E-05 27899000 2120.13 2264.8 3025.4 2947.9 2108.2 2247.6 2451 2897.8 2281.4 3015.2 FALSE TRUE 2149.818361 2512.078523 2261.600352 2758.834888 2395.372532 2646.180302 2916.064455 2651.613802 2500.538664 2400.700585 0.895496246 1.046393931 0.942058483 1.149179079 0.997780626 1.102253367 1.214672281 1.104516664 1.04158706 1 11.22923977 -6.253498394 24.87284337 1.093716257 0.969823985 0.392011314 0.071244894 594.2841118 1861418.555 0.019450485 0.032895657 5.58E-07 6.253498394 -0.123892272 LHGS(ph)VPNLSR ddPTM_K562_Paclitaxel_30min_R1 1 LHGSVPNLSR 10 0 J3QLK7;Q9BZF2-2;Q9BZF2 J3QLK7 OSBPL7 Oxysterol-binding protein-related protein 7 1 LHGS(1)VPNLSR 103.14 0.0058224 10108000 1780.1 1484.9 2129.4 1573 1230.2 1641.8 1465.9 1971.7 1546.3 2063.8 TRUE FALSE 1805.026892 1647.026404 1591.806634 1472.11482 1397.774067 1932.950178 1744.046872 1804.191778 1694.829024 1643.196427 1.098485161 1.002330809 0.968725715 0.895884872 0.850643322 1.176335431 1.061374552 1.097976936 1.031422048 1 10.68228923 -7.265552084 24.99989464 1.078792395 0.961952836 0.351621335 0.074639393 418.2699591 2542531.001 0.027109175 0.024762082 5.43E-08 7.265552084 -0.116839558 LHHCPGNHS(ph)WDSTISGSQR ddPTM_K562_Paclitaxel_30min_R1 2 LHHCPGNHSWDSTISGSQR 19 0 O43353-2;O43353 O43353-2 RIPK2 Receptor-interacting serine/threonine-protein kinase 2 1 LHHCPGNHS(0.965)WDS(0.028)T(0.007)ISGSQR;LHHCPGNHS(0.997)WDS(0.002)T(0.001)ISGSQR 70.315 0.012236 26274000 2300.66 2128.58 3207 2340.54 2370.3 2758.9 2054.3 2252.64 2403.03 2612.66 TRUE FALSE 2332.876338 2360.985563 2397.353186 2190.42824 2693.17499 3248.152178 2444.092701 2061.264171 2633.851769 2080.198458 1.121468161 1.134980922 1.152463688 1.052990032 1.29467214 1.561462641 1.174932465 0.990897846 1.266154082 1 11.02250546 -9.637939483 0.889011499 1.000591293 1.201341101 0.125099875 0.149764104 5.868879561 6.25011791 0.174926319 0.052976251 2.30E-10 9.637939483 0.200749808 LHNELQSGS(ph)LR ddPTM_K562_Paclitaxel_30min_R1 2 LHNELQSGSLR 11 0 Q5JTH9-2;Q5JTH9-3;Q5JTH9;A0A087X1U8 Q5JTH9-2 RRP12 RRP12-like protein 1 LHNELQSGS(1)LR;LHNELQS(0.037)GS(0.963)LR 168.76 0.00026169 43249000 1310.72 1091.47 1736.6 1575.2 1302.83 1115.14 1190.96 1541.61 1066.96 1798.11 TRUE FALSE 1329.074124 1210.640386 1298.173852 1474.173722 1480.297503 1312.894422 1416.938443 1410.640608 1169.446275 1431.654195 0.928348569 0.845623468 0.906764955 1.029699579 1.033976995 0.917047166 0.989721155 0.985322163 0.816849683 1 10.48346735 -6.019292339 22.73541323 0.968476261 0.884288053 0.231807299 0.062321238 307.1312022 361948.1443 0.01684652 0.029871238 9.57E-07 6.019292339 -0.084188208 LHPDGS(ph)PDVAGEK ddPTM_K562_Paclitaxel_30min_R1 1 LHPDGSPDVAGEK 13 0 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 1 LHPDGS(1)PDVAGEK 117.48 0.0026525 7287400 1195.7 1058.9 2343.8 1622.4 1016.7 1199.6 1088 1600.6 988.37 1903.4 TRUE FALSE 1212.443489 1174.514283 1752.078702 1518.346526 1155.191753 1412.332217 1294.44232 1464.619039 1083.307355 1515.486035 0.800036068 0.775008318 1.156116692 1.001887507 0.762258263 0.931933508 0.854143351 0.966435193 0.714825033 1 10.56556484 -6.73159223 24.99935441 0.872064702 0.937876419 0.05247574 0.127754733 720.7089926 603647.7925 0.038733612 0.049997738 1.86E-07 6.73159223 0.065811717 LHPFSLPQT(ph)HSPSR ddPTM_K562_Paclitaxel_30min_R1 1 LHPFSLPQTHSPSR 14 0 Q70SY1-2;Q70SY1 Q70SY1-2 CREB3L2 Cyclic AMP-responsive element-binding protein 3-like protein 2;Processed cyclic AMP-responsive element-binding protein 3-like protein 2 1 LHPFS(0.024)LPQT(0.856)HS(0.029)PS(0.091)R 94.639 0.01377 6050500 355.66 291.15 358.06 349.84 392.9 326.86 359.91 360.95 201.77 347.03 TRUE FALSE 360.6403373 322.9387416 267.6633246 327.4028282 446.4196319 384.8240317 428.2010436 330.2850445 221.15091 276.3050955 1.305225069 1.168775918 0.968723809 1.184932285 1.615676436 1.392750398 1.549739945 1.195363567 0.800386651 1 8.110118358 -8.621574672 5.236916407 0.908401829 1.307808891 0.44251883 0.18204035 0.216269712 9.190730116 0.146687578 0.052304196 2.39E-09 8.621574672 0.399407062 LHPGT(ph)SCPRLSPPLHMAPGAGEHHLAR ddPTM_K562_Paclitaxel_30min_R1 1 LHPGTSCPRLSPPLHMAPGAGEHHLAR 27 1 Q6ZN04 Q6ZN04 MEX3B RNA-binding protein MEX3B 1 LHPGT(0.463)S(0.463)CPRLS(0.074)PPLHMAPGAGEHHLAR 53.551 0.0037152 16173000 1074.2 972.35 1266.9 1063.9 828.06 910.39 952.33 1282.5 1144.8 1790.2 TRUE FALSE 1089.242114 1078.514461 947.0554262 995.6662158 940.8557912 1071.834884 1133.029646 1173.54362 1254.763155 1425.356257 0.76418938 0.756663084 0.664434187 0.698538496 0.660084653 0.751976833 0.794909792 0.823333545 0.880315464 1 10.47710684 -8.701829173 0.806552146 0.995808897 0.708603115 0.872979609 0.035012701 0.209095663 0.291228178 0.036595299 0.014307427 1.99E-09 8.701829173 -0.287205782 LHPGTS(ph)CPRLSPPLHMAPGAGEHHLAR ddPTM_K562_Paclitaxel_30min_R1 1 LHPGTSCPRLSPPLHMAPGAGEHHLAR 27 1 Q6ZN04 Q6ZN04 MEX3B RNA-binding protein MEX3B 1 LHPGT(0.206)S(0.733)CPRLS(0.061)PPLHMAPGAGEHHLAR 67.418 0.00032094 14251000 912.75 1197.2 1260.6 1075.5 702.45 1019.9 1359.6 1421.9 1234.1 1682.2 TRUE FALSE 925.5313161 1327.914345 942.3459391 1006.522244 798.1355826 1200.764945 1617.577002 1301.10072 1352.640819 1339.366717 0.691021588 0.991449413 0.703575748 0.751491157 0.595905194 0.896516936 1.207717784 0.971429784 1.00991073 1 10.38733531 -7.5240647 24.9653067 1.045917145 0.75696338 0.619204605 0.1110336 27.40431291 576852.5856 0.042270716 0.033014009 2.99E-08 7.5240647 -0.288953766 LHPIT(ph)RLENQQMMKRPVS(ph)AVGY(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 LHPITRLENQQMMKRPVSAVGYK 23 3 O15066-2;O15066 O15066-2 KIF3B "Kinesin-like protein KIF3B;Kinesin-like protein KIF3B, N-terminally processed" 3 LHPIT(1)RLENQQMMKRPVS(1)AVGY(1)K 50.425 0.012836 13015000 1802.8 1812.1 2629.8 2101.5 1727.8 1858.8 1825.9 1587.4 3395.2 2224.1 TRUE FALSE 1828.044762 2009.951206 1965.874465 1966.719196 1963.155612 2188.432081 2172.354993 1452.540462 3721.32413 1770.827199 1.032311206 1.135035201 1.11014472 1.110621746 1.108609362 1.23582475 1.226745893 0.820260984 2.101460906 1 10.79020772 -8.737723859 24.99999993 1.55073247 1.108854832 0.310866603 0.269530061 220.3894887 232327.5693 0.164239389 0.062001698 1.83E-09 8.737723859 -0.441877638 LHPPS(ph)PVPQGVCPAHREPLAAFCGDELR ddPTM_K562_Paclitaxel_30min_R1 5 LHPPSPVPQGVCPAHREPLAAFCGDELR 28 1 Q96F44-2;Q96F44-3;Q96F44 Q96F44-2 TRIM11 E3 ubiquitin-protein ligase TRIM11 1 LHPPS(1)PVPQGVCPAHREPLAAFCGDELR;LHPPS(1)PVPQGVCPAHREPLAAFCGDELR;LHPPS(1)PVPQGVCPAHREPLAAFCGDELR;LHPPS(1)PVPQGVCPAHREPLAAFCGDELR;LHPPS(1)PVPQGVCPAHREPLAAFCGDELR 79.177 2.82E-05 260729000 6394.46 5620.34 7634.2 7121.7 6285.96 5639.95 5612.82 6623.94 6202.37 6364.73 TRUE FALSE 6484.002169 6233.987728 5706.851791 6664.946038 7142.214174 6640.115944 6677.823294 6061.194952 6798.135351 5067.594532 1.279502953 1.230167033 1.126146095 1.31520902 1.409389431 1.310309241 1.317750118 1.196069439 1.341491571 1 12.30708538 -11.15180193 4.235609571 0.999940112 1.278916031 0.552815447 0.075715803 60733010.47 5.873611834 42206.23051 0.01968228 7.05E-12 11.15180193 0.278975919 LHQLS(ph)GSDQLESTAHSR ddPTM_K562_Paclitaxel_30min_R1 3 LHQLSGSDQLESTAHSR 17 0 A0A087X2D8;O60271-5;O60271-3;O60271-4;O60271-2;O60271 A0A087X2D8 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 LHQLS(0.923)GS(0.077)DQLESTAHSR;LHQLS(0.998)GS(0.002)DQLESTAHSR;LHQLS(0.993)GS(0.007)DQLESTAHSR 165.41 3.05E-08 348097000 5018.7 5080.2 6649.4 5550.9 5165.206 4557.3 4814.4 5659.624 3916.9 5989.8 TRUE FALSE 5088.977284 5634.873416 4970.676731 5194.890119 5868.794505 5365.473167 5727.907267 5178.803615 4293.135746 4769.075472 1.067078371 1.18154419 1.042272608 1.089286624 1.230593757 1.125055202 1.201051923 1.085913537 0.900202937 1 12.2194939 -8.621622665 5.17149328 0.953390673 1.134444113 0.590002282 0.060270507 0.140200563 5.86117723 0.043126321 0.01534264 2.39E-09 8.621622665 0.18105344 LHRIET(ph)DEEESCDNAHGDANQPAR ddPTM_K562_Paclitaxel_30min_R1 3 LHRIETDEEESCDNAHGDANQPAR 24 1 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 LHRIET(0.998)DEEES(0.002)CDNAHGDANQPAR;LHRIET(0.996)DEEES(0.004)CDNAHGDANQPAR;LHRIET(0.795)DEEES(0.205)CDNAHGDANQPAR 92.8 0.00080529 216291000 1828.69 1938.97 2247.01 1933.74 1933.95 1627.9 1813.63 1860.23 2245.59 2331.71 TRUE FALSE 1854.297302 2150.673302 1679.724535 1809.718572 2197.386732 1916.585208 2157.756825 1702.19185 2461.288953 1856.506222 0.998810174 1.158451976 0.904777218 0.97479801 1.183613987 1.032361317 1.162267489 0.916879152 1.325763913 1 10.85837444 -6.740053229 24.99958802 1.098708313 1.012410094 0.127668947 0.12021764 556.3428819 650340.6351 0.033676618 0.04343601 1.82E-07 6.740053229 -0.086298219 LHS(ph)PGATSTAELGSR ddPTM_K562_Paclitaxel_30min_R1 2 LHSPGATSTAELGSR 15 0 H7C0P0;Q9BV73-2;Q9BV73 H7C0P0 CEP250 Centrosome-associated protein CEP250 1 LHS(1)PGATSTAELGSR;LHS(1)PGATSTAELGSR 124.45 0.00019618 56663000 1867.22 1653.18 2386.2 2198.31 1664.09 1737.95 1629.39 1830.28 1713.84 2174.9 TRUE FALSE 1893.366841 1833.679783 1783.774298 2057.320236 1890.767231 2046.15103 1938.558247 1674.78629 1878.46199 1731.654186 1.093386229 1.058917997 1.030098453 1.188066447 1.091885 1.181616426 1.119483475 0.967159785 1.084778938 1 10.75793514 -8.243699147 24.90334735 1.01947702 1.109267174 0.384422686 0.053184559 829.7573092 1164797.248 0.025774451 0.014836282 5.71E-09 8.243699147 0.089790154 LHS(ph)PQTHWK ddPTM_K562_Paclitaxel_30min_R1 1 LHSPQTHWK 9 0 B8ZZS4;Q9H8Y5 B8ZZS4 ANKZF1 Ankyrin repeat and zinc finger domain-containing protein 1 1 LHS(1)PQTHWK 88.021 0.014568 17492000 3552.2 3073.9 6511.3 4307.2 2747.5 2748.9 2977.7 4042.7 4063.8 4808.1 TRUE FALSE 3601.941759 3409.518797 4867.441784 4030.95547 3121.756016 3236.378819 3542.70303 3699.247401 4454.146148 3828.206581 0.940895347 0.890630828 1.271467901 1.052961847 0.815461744 0.845403389 0.92542107 0.966313422 1.163507259 1 11.90245297 -8.721959396 19.66329837 1.081751429 0.96423281 0.122971936 0.12623763 34.61924644 17242.40255 0.092585486 0.03498545 1.90E-09 8.721959396 -0.117518619 LHS(ph)SNPNLCADIEFQTPPSHLTDPLESSTDYTK ddPTM_K562_Paclitaxel_30min_R1 1 LHSSNPNLCADIEFQTPPSHLTDPLESSTDYTK 33 0 Q9BZF3-6;Q9BZF3-2;Q9BZF3-4;Q9BZF3;Q9BZF3-3;Q9BZF3-5 Q9BZF3-6 OSBPL6 Oxysterol-binding protein-related protein 6 1 LHS(0.5)S(0.5)NPNLCADIEFQTPPSHLTDPLESSTDYTK 94.269 2.05E-10 22154000 760.59 891.33 1571.3 1160.4 584.49 752.88 906.17 1226.2 781.29 1540.7 TRUE FALSE 771.2406066 988.6484237 1174.605881 1085.977138 664.1074335 886.392697 1078.111027 1122.026656 856.3363954 1226.704494 0.628709367 0.805938536 0.957529614 0.885280149 0.541375235 0.722580459 0.878867757 0.914667437 0.698078795 1 10.26057204 -11.1823447 5.422114155 1.0000078 0.788391801 0.208609321 0.127058062 1.26E-05 1.90E-06 0.12962347 0.031437151 6.57E-12 11.1823447 -0.211615999 LHS(ph)SNPNLSTLDFGEEK ddPTM_K562_Paclitaxel_30min_R1 2 LHSSNPNLSTLDFGEEK 17 0 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3;Q9H4L5-6;Q9H4L5-2;Q9H4L5-8;Q9H4L5-4 Q9H4L5-5;Q9H4L5-6 OSBPL3 Oxysterol-binding protein-related protein 3 1 LHS(0.5)S(0.5)NPNLSTLDFGEEK;LHS(0.5)S(0.5)NPNLSTLDFGEEK 101.67 0.0014684 57786000 8700.5 7990.7 14751.8 9917.5 7880.4 7009.8 7036.9 11153.7 6332.9 14581 TRUE FALSE 8822.333843 8863.151649 11027.52564 9281.435939 8953.843896 8252.889608 8372.11504 10206.12357 6941.203341 11609.3842 0.75993125 0.763447182 0.949880326 0.799477025 0.771259159 0.71088091 0.721150657 0.87912704 0.597895911 1 13.50300383 -5.566497783 24.99993826 0.796141098 0.760805239 0.018638621 0.111761304 714.2115589 409342.4032 0.027446047 0.072615519 2.71E-06 5.566497783 -0.03533586 LHSS(ph)NPNLCADIEFQTPPSHLTDPLESSTDYTK ddPTM_K562_Paclitaxel_30min_R1 1 LHSSNPNLCADIEFQTPPSHLTDPLESSTDYTK 33 0 Q9BZF3-6;Q9BZF3-2;Q9BZF3-4;Q9BZF3;Q9BZF3-3;Q9BZF3-5 Q9BZF3-6 OSBPL6 Oxysterol-binding protein-related protein 6 1 LHS(0.243)S(0.757)NPNLCADIEFQTPPSHLTDPLESSTDYTK 95.141 1.53E-10 27160000 1180.6 961.7 1730.8 1045 796.45 828.82 959.57 1303.9 837.98 2033.9 TRUE FALSE 1197.132042 1066.701658 1293.838134 977.9783772 904.939974 975.7995898 1141.643398 1193.125556 918.4717232 1619.390064 0.739248727 0.658705819 0.798966329 0.603917734 0.558815318 0.602572297 0.704983576 0.736774656 0.567171396 1 10.66123482 -11.26108814 4.414573594 1.00018225 0.664064802 0.63453925 0.07661959 0.000143724 2.41E-05 0.076939912 0.018650534 5.48E-12 11.26108814 -0.336117447 LHSS(ph)NPNLSTLDFGEEK ddPTM_K562_Paclitaxel_30min_R1 1 LHSSNPNLSTLDFGEEK 17 0 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3;Q9H4L5-6;Q9H4L5-2;Q9H4L5-8;Q9H4L5-4 Q9H4L5-5;Q9H4L5-6 OSBPL3 Oxysterol-binding protein-related protein 3 1 LHS(0.022)S(0.978)NPNLSTLDFGEEK 191.35 4.48E-11 16782000 1443.6 1083 2272.1 1170.6 1038.9 919.72 1062 1710.1 906.68 1815.6 TRUE FALSE 1463.814854 1201.245602 1698.480254 1095.522955 1180.415769 1082.819428 1263.508956 1564.816331 993.7706652 1445.579723 1.012614407 0.830978453 1.174947481 0.757843333 0.816569124 0.74905549 0.874049999 1.082483592 0.687454762 1 10.49743246 -6.290040946 24.97990595 0.851021972 0.988660084 0.209649374 0.135447488 1172.115982 1023694.412 0.037428632 0.055527497 5.13E-07 6.290040946 0.137638113 LHSYS(ph)SPSTK ddPTM_K562_Paclitaxel_30min_R1 3 LHSYSSPSTK 10 0 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 LHSYS(0.948)S(0.049)PS(0.002)TK;LHS(0.001)YS(0.775)S(0.207)PS(0.017)TK;LHSYS(0.718)S(0.214)PS(0.062)T(0.006)K 174.57 2.99E-27 151973000 19988.1 17216.4 32959.4 21931.6 15902.4 14744.4 14687.4 21277 17858.7 24576.5 TRUE FALSE 20267.99507 19096.14477 24638.39183 20525.00534 18068.57611 17359.11232 17474.25748 19469.38604 19574.10793 19567.79581 1.035783246 0.975896568 1.259129647 1.048917596 0.923383312 0.887126608 0.893011029 0.99497083 1.000322577 1 14.25619363 -6.651353531 5.074331685 0.944006391 1.089856829 0.40791706 0.07750305 0.210824434 8.541544117 0.024259441 0.031445235 2.23E-07 6.651353531 0.145850437 LHTDDELNWLDHGR ddPTM_K562_Paclitaxel_30min_R1 4 LHTDDELNWLDHGR 14 0 Q9Y490 Q9Y490 TLN1 Talin-1 0 ;;; 203.87 9.46E-13 171883000 4864.57 5021.3 6636.2 5867.38 5144.71 4814.33 5496 5473.7 4869.29 6423.5 FALSE TRUE 4932.688988 5569.542515 4960.809235 5491.072508 5845.506603 5668.083829 6538.837309 5008.675019 5337.007061 5114.387174 0.964473127 1.088995089 0.96997139 1.073652096 1.142953477 1.108262561 1.278518244 0.979330436 1.043528165 1 12.32034567 -5.259068414 23.44104816 1.081510083 0.964473033 0.128428081 0.08624909 192.2153968 1900069.846 0.022146574 0.142150781 5.51E-06 5.259068414 -0.11703705 LHVGNIS(ph)PTCTNK ddPTM_K562_Paclitaxel_30min_R1 2 LHVGNISPTCTNK 13 0 D6R9K7;J3QRR5;E9PB51;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2;Q9BWF3 D6R9K7 RBM4 RNA-binding protein 4 1 LHVGNIS(0.5)PT(0.5)CT(0.001)NK;LHVGNIS(0.979)PT(0.021)CTNK 142.4 3.39E-05 238300000 9616.6 8770.6 17281.9 11720.4 8565.1 7934.5 7088.1 11143 7673.8 13013.6 TRUE FALSE 9751.26207 9728.203768 12918.87061 10968.706 9731.811628 9341.572169 8433.029973 10196.3326 8410.902777 10361.42118 0.941112411 0.938887012 1.246824194 1.058610186 0.939235213 0.901572478 0.813887384 0.984066995 0.811751847 1 13.33893428 -6.870963727 3.845174128 0.897924913 1.052954342 0.326547919 0.097796183 0.269216373 7.476776249 0.032197325 0.037297138 1.35E-07 6.870963727 0.155029429 LHVGNIS(ph)PTCTNKELR ddPTM_K562_Paclitaxel_30min_R1 1 LHVGNISPTCTNKELR 16 1 D6R9K7;J3QRR5;E9PB51;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2;Q9BWF3 D6R9K7 RBM4 RNA-binding protein 4 1 LHVGNIS(0.985)PT(0.015)CTNKELR 90.872 0.0068919 27959000 1799.6 1988.3 2680.6 1885.7 1739.7 1470.5 1377.7 2137.1 4015.4 2311.4 TRUE FALSE 1824.799952 2205.389318 2003.849377 1764.759642 1976.676593 1731.272528 1639.111383 1955.540016 4401.097111 1840.335411 0.991558355 1.198362703 1.088850089 0.958933698 1.074084964 0.940737497 0.890659047 1.062599787 2.391464667 1 10.84575301 -8.571310819 24.99861583 1.706169398 1.022991956 0.410017319 0.321772721 98.94844352 51071.30086 0.195437813 0.073868581 2.68E-09 8.571310819 -0.683177442 LHVGNIS(ph)PTCTNQELR ddPTM_K562_Paclitaxel_30min_R1 1 LHVGNISPTCTNQELR 16 0 E9PLB0;E9PM61;U3KQD5;Q9BQ04 E9PLB0 RBM4B RNA-binding protein 4B 1 LHVGNIS(0.99)PT(0.009)CT(0.002)NQELR 112.12 0.00097155 24726000 1302.7 1345.4 1633.7 1547.3 1095.5 1227.3 1078.8 1336.9 1228 1505.7 TRUE FALSE 1320.941819 1492.295322 1221.25223 1448.063103 1244.725647 1444.944423 1283.496668 1223.322 1345.954887 1198.837514 1.101852256 1.244785307 1.018697043 1.207889382 1.038277192 1.205287962 1.070617706 1.020423524 1.122716692 1 10.22742042 -8.945321662 0.257354389 0.974819377 1.164643993 0.216273193 0.074977936 3.606665906 0.822121367 0.253171466 0.160988955 1.13E-09 8.945321662 0.189824615 LHVGNISPT(ph)CTNK ddPTM_K562_Paclitaxel_30min_R1 1 LHVGNISPTCTNK 13 0 D6R9K7;J3QRR5;E9PB51;Q9BWF3-3;Q9BWF3-4;Q9BWF3-2;Q9BWF3 D6R9K7 RBM4 RNA-binding protein 4 1 LHVGNIS(0.036)PT(0.883)CT(0.081)NK 122.1 0.0032415 69840000 2035.9 1757.8 2984.2 2110.6 1738.4 1684.8 1617.1 1878.7 1373.2 2548.8 TRUE FALSE 2064.408881 1949.722548 2230.801802 1975.235563 1975.199511 1983.575624 1923.936283 1719.092709 1505.101996 2029.353161 1.017274332 0.960760594 1.099267414 0.973332587 0.973314822 0.977442302 0.948053951 0.847113623 0.741665879 1 10.98680424 -8.062582883 2.400480084 0.845380137 1.001154993 0.431646318 0.069550334 0.257396717 2.901349429 0.038250551 0.01989416 8.66E-09 8.062582883 0.155774857 LIDLES(ph)PTPESQK ddPTM_K562_Paclitaxel_30min_R1 1 LIDLESPTPESQK 13 0 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 LIDLES(0.945)PT(0.055)PESQK 237.59 1.33E-42 27418000 2549.6 2190.1 4762.4 2991.8 2127.6 1741.7 1865.6 2911.4 2277.5 3430.9 TRUE FALSE 2585.302266 2429.222524 3560.073219 2799.919339 2417.415141 2050.56604 2219.587861 2664.058398 2496.264051 2731.680697 0.946414517 0.889277626 1.303253789 1.024980461 0.884955238 0.750660955 0.812535617 0.975245167 0.913819852 1 11.41557314 -6.74038523 5.38856798 0.876890896 1.050744898 0.269095364 0.121333728 0.234184385 19.15645065 0.038770528 0.048415702 1.82E-07 6.74038523 0.173854002 LIDLESPT(ph)PESQK ddPTM_K562_Paclitaxel_30min_R1 1 LIDLESPTPESQK 13 0 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 LIDLES(0.09)PT(0.909)PES(0.001)QK 169.17 0.0004803 21936000 2753.6 2511.4 4939.4 3302.6 2625.4 2010.8 2107.3 2842.6 2920 3734.1 TRUE FALSE 2792.158896 2785.603145 3692.38738 3090.786018 2983.023928 2367.387147 2507.149174 2601.103387 3200.479047 2973.08837 0.939144266 0.936939236 1.24193664 1.039587672 1.003341831 0.796272042 0.843281081 0.874882635 1.076482986 1 11.53774663 -7.035753816 10.80089814 0.904980525 1.043453174 0.218466932 0.107985388 1.185629551 355.4983211 0.036976517 0.03731724 9.21E-08 7.035753816 0.138472649 LIDREIISHDTR ddPTM_K562_Paclitaxel_30min_R1 2 LIDREIISHDTR 12 1 B1AHF3;P00387-2;P00387;P00387-3 B1AHF3 CYB5R3 NADH-cytochrome b5 reductase 3;NADH-cytochrome b5 reductase 3 membrane-bound form;NADH-cytochrome b5 reductase 3 soluble form 0 ; 174.23 0.00027986 14319200 6111.3 6184.7 7169.2 6939.3 6009.5 6320.3 5952 7445.4 6251.3 7834.5 FALSE TRUE 6196.877055 6859.966461 5359.246792 6494.244357 6828.095642 7441.116464 7081.360928 6812.866797 6851.765297 6237.8246 0.993435605 1.099736992 0.859153172 1.041107241 1.094627708 1.192902485 1.135229248 1.092186337 1.098422244 1 12.60682727 -6.661198581 3.752955994 1.113472848 0.990018804 0.349710234 0.070915749 0.239493063 6.422950859 0.021484805 0.028029027 2.18E-07 6.661198581 -0.123454044 LIDSSGSASVLTHSS(ph)SGNSLK ddPTM_K562_Paclitaxel_30min_R1 1 LIDSSGSASVLTHSSSGNSLK 21 0 Q96SU4-5;Q96SU4-4;Q96SU4-3;Q96SU4-7;Q96SU4-2;Q96SU4;Q96SU4-6 Q96SU4-5 OSBPL9 Oxysterol-binding protein-related protein 9 1 LIDSSGSAS(0.001)VLTHS(0.029)S(0.384)S(0.384)GNS(0.202)LK 93.388 0.00045527 10465000 529.02 402.12 744.06 703.45 335.14 562.77 408.32 741.11 353.4 545.4 TRUE FALSE 536.4279122 446.0248215 556.2128506 658.3338655 380.791742 662.5693578 485.7965884 678.1480796 387.345649 434.2471806 1.235305458 1.027121974 1.280866924 1.516034864 0.876900896 1.525788508 1.118709827 1.561663748 0.891993469 1 8.762372672 -8.799028651 24.99992907 0.945995792 1.259086925 0.266159968 0.213344162 251.9061755 167532.0645 0.192671374 0.049752245 1.59E-09 8.799028651 0.313091134 LIEDNEY(ph)TAR ddPTM_K562_Paclitaxel_30min_R1 3 LIEDNEYTAR 10 0 J3QRU1;P07947;Q573B4;P06241-3;P06239;P06241-2;P12931;P06241;P06239-3;P12931-2 J3QRU1 YES1;LCK;FYN;SRC Non-specific protein-tyrosine kinase;Tyrosine-protein kinase Yes;Tyrosine-protein kinase Fyn;Tyrosine-protein kinase Lck;Proto-oncogene tyrosine-protein kinase Src 1 LIEDNEY(0.886)T(0.114)AR;LIEDNEY(0.962)T(0.038)AR;LIEDNEY(0.999)T(0.001)AR 205.59 1.32E-08 121600000 3064.16 3159.6 5289.6 4808.4 4440.7 3635.7 2294.76 3020.51 2268.53 2788.29 TRUE FALSE 3107.067694 3504.575813 3954.175059 4500.010746 5045.598522 4280.440347 2730.178731 2763.898822 2486.432443 2220.034967 1.399557998 1.578612889 1.781131882 2.02699994 2.272756328 1.928095913 1.229790868 1.24497986 1.119996973 1 11.11636669 -7.79690191 6.458546862 1.162815762 1.846677938 0.676108073 0.231318364 0.129399107 15.20720474 0.110632634 0.075662361 1.60E-08 7.79690191 0.683862177 LIEDTEDWRPR ddPTM_K562_Paclitaxel_30min_R1 2 LIEDTEDWRPR 11 1 Q96HC4;H0Y8Y3;Q96HC4-7;Q96HC4-4;H0YBI4;Q96HC4-3;Q96HC4-2;Q96HC4-6 Q96HC4 PDLIM5 PDZ and LIM domain protein 5 0 ; 251.64 1.29E-52 56415000 8098.2 7601.9 8848.3 8511.1 7445.8 7330.5 7527.5 8994.4 7616.2 9258.1 FALSE TRUE 8211.599785 8431.90115 6614.437231 7965.23614 8460.044018 8630.46125 8955.803829 8230.269579 8347.77004 7371.294138 1.113997031 1.14388342 0.897323741 1.080574997 1.147701321 1.170820359 1.214956785 1.116529801 1.132470077 1 12.84770221 -6.651920388 4.940986551 1.142225817 1.050400432 0.156975724 0.079714827 0.333792903 13.10162346 0.024095547 0.031246222 2.23E-07 6.651920388 -0.091825386 LIEERDTLMRTGVYNHEDR ddPTM_K562_Paclitaxel_30min_R1 1 LIEERDTLMRTGVYNHEDR 19 2 Q8N960-2;Q8N960 Q8N960-2 CEP120 Centrosomal protein of 120 kDa 0 50.966 0.021449 8520600 7516.6 7779.6 7278.6 7636.2 7173.4 7182 7296.2 7578.5 5990.4 7786.5 FALSE TRUE 7621.855591 8629.003037 5441.027409 7146.44831 8150.538527 8455.62686 8680.615861 6934.659121 6565.804686 6199.607026 1.22940947 1.391862904 0.877640693 1.152726016 1.314686317 1.363897232 1.40018808 1.118564305 1.059067883 1 12.59796106 -8.495887071 8.802130027 1.048679449 1.243325681 0.271636675 0.145226948 0.45786199 143.6077132 0.089695812 0.041071701 3.19E-09 8.495887071 0.194646232 LIESLS(ph)PDFCHQNK ddPTM_K562_Paclitaxel_30min_R1 2 LIESLSPDFCHQNK 14 0 Q9H6R7;Q9H6R7-2 Q9H6R7 C2orf44 WD repeat and coiled-coil-containing protein C2orf44 1 LIES(0.349)LS(0.651)PDFCHQNK;LIES(0.001)LS(0.999)PDFCHQNK 177.21 3.56E-06 63088000 7325.5 6225.2 12510.5 8426.9 6380.8 6065.4 5773.2 9073.9 7181.6 10572.1 TRUE FALSE 7428.079601 6904.888388 9352.069547 7886.436351 7249.972988 7141.013528 6868.634562 8303.015557 7871.424768 8417.500217 0.882456716 0.82030154 1.111026945 0.936909551 0.86129763 0.848353234 0.815994581 0.986399209 0.935126174 1 13.03917614 LIETGERER ddPTM_K562_Paclitaxel_30min_R1 2 LIETGERER 9 1 J3KNT2;E5RI00;E5RHT9;E5RJ84;E5RHX8;Q9NPA8-2;Q9NPA8 J3KNT2 ENY2 Transcription and mRNA export factor ENY2 0 ; 157.99 3.79E-05 14185800 2596.23 2599.95 3270.4 2710.7 2566 2460.78 2292.67 2630.93 3360.6 3146.1 FALSE TRUE 2632.58523 2883.821333 2444.747072 2536.847835 2915.532643 2897.164782 2727.692164 2407.416075 3683.400646 2504.923093 1.050964494 1.151261427 0.975976899 1.012744799 1.16392102 1.156588316 1.088932499 0.961073848 1.470464565 1 11.29055059 -6.76540213 24.99110586 1.136476774 1.050005796 0.101050914 0.134714644 265.3597974 1673494.382 0.039941601 0.047008148 1.72E-07 6.76540213 -0.086470977 LIEVDDER ddPTM_K562_Paclitaxel_30min_R1 2 LIEVDDER 8 0 A2A3R7;P62753 A2A3R7 RPS6 40S ribosomal protein S6 0 ; 127.46 0.0090434 203325000 8779.7 8573 10316.1 9422.7 8811.2 7903.8 8385.6 9229.8 9217.5 9539.1 FALSE TRUE 8902.642888 9509.029132 7711.672967 8818.370196 10011.43461 9305.427955 9976.723824 8445.670879 10102.88206 7595.026184 1.172167504 1.252007419 1.015358312 1.161071731 1.318156695 1.225200247 1.313586495 1.112000232 1.330197134 1 12.89083922 -4.925574313 14.72102827 1.198596682 0.843050737 0 0.11415796 6473303.811 26472729.29 0.027571887 70726700.17 1.19E-05 4.925574313 -0.355545945 LIGTAVPQRT(ph)SPTGPK ddPTM_K562_Paclitaxel_30min_R1 1 LIGTAVPQRTSPTGPK 16 1 C9JB30;Q9UPY8 C9JB30 MAPRE3 Microtubule-associated protein RP/EB family member 3 1 LIGTAVPQRT(0.491)S(0.491)PT(0.019)GPK 100.69 0.01411 24481000 1580.9 1170.5 2165 1536.5 1055.3 1054.3 947.7 1276.4 1150.4 1814.7 TRUE FALSE 1603.037477 1298.299148 1618.418974 1437.955767 1199.049726 1241.265302 1127.521128 1167.961853 1260.90106 1444.863144 1.109473575 0.898562022 1.120119217 0.995219356 0.829870795 0.859088494 0.780365346 0.808354658 0.872678541 1 10.49671713 -6.692021603 4.738869526 0.844764167 1.032120745 0.531831798 0.079192476 0.150301853 6.41578521 0.022634076 0.029077851 2.03E-07 6.692021603 0.187356579 LIHGEDS(ph)DS(ph)EGEEEGRGSSGCSEAGGAGHEEGR ddPTM_K562_Paclitaxel_30min_R1 2 LIHGEDSDSEGEEEGRGSSGCSEAGGAGHEEGR 33 1 Q9C0C9 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 2 LIHGEDS(1)DS(1)EGEEEGRGSSGCSEAGGAGHEEGR;LIHGEDS(0.99)DS(0.978)EGEEEGRGS(0.011)S(0.011)GCS(0.01)EAGGAGHEEGR 100.98 4.56E-12 108248000 1077.98 1323.36 1797.97 1300.36 1250.81 1121.22 828.3 1285.43 1198.11 1444.3 TRUE FALSE 1093.075046 1467.84892 1344.050236 1216.96073 1421.191498 1320.052624 985.465601 1176.224698 1313.193819 1149.950867 0.950540651 1.2764449 1.168789272 1.058271935 1.235871496 1.147920891 0.856963223 1.022847786 1.141956458 1 10.16735651 -7.622822498 24.94405782 1.006638708 1.147899704 0.275265104 0.106161992 15.76084569 3913.098968 0.039761086 0.030798802 2.38E-08 7.622822498 0.141260997 LIHPDEDISLEER ddPTM_K562_Paclitaxel_30min_R1 4 LIHPDEDISLEER 13 0 X6R4W8;J3KS31;J3QRS9;O43670-3;O43670-2;O43670;O43670-4 X6R4W8 ZNF207 BUB3-interacting and GLEBS motif-containing protein ZNF207 0 ;;; 201.38 1.18E-06 40085700 11532.1 10219.9 12930.3 12254.6 11411.8 10233.5 9350.7 11268.1 9673.2 12417.9 FALSE TRUE 11693.58498 11335.74324 9665.885845 11468.64481 12966.28036 12048.26754 11124.94651 10310.80457 10602.35408 9887.125164 1.182708299 1.1465156 0.977623494 1.159957482 1.31143079 1.218581472 1.125195274 1.042851628 1.072339422 1 13.27133538 -8.155338016 3.570279009 1.042219421 1.163479798 0.338821584 0.079411971 0.345303534 8.056684225 0.046748361 0.025003851 6.99E-09 8.155338016 0.121260377 LIHPDEDISLEERR ddPTM_K562_Paclitaxel_30min_R1 2 LIHPDEDISLEERR 14 1 X6R4W8;J3KS31;J3QRS9;O43670-3;O43670-2;O43670;O43670-4 X6R4W8 ZNF207 BUB3-interacting and GLEBS motif-containing protein ZNF207 0 ; 138.42 1.55E-06 67945000 3331.1 3460.4 4182.6 3877.8 3052.1 3312.3 3249.5 3713.3 3824.8 3744 FALSE TRUE 3377.745677 3838.218174 3126.6509 3629.095264 3467.847692 3899.689898 3866.075661 3397.831987 4192.18913 2980.970745 1.133102592 1.287573245 1.048870039 1.217420624 1.163328321 1.308194622 1.296918351 1.139840769 1.406316763 1 11.5415665 -7.222492698 23.92918554 1.243160711 1.172485995 0.056951149 0.116499509 867.1874181 532807.3134 0.03586714 0.035865917 5.99E-08 7.222492698 -0.070674716 LIHTLDDR ddPTM_K562_Paclitaxel_30min_R1 2 LIHTLDDR 8 0 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;H7C3A1 Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 0 ; 153.04 7.71E-06 22962300 4894 5081.1 5694.8 5193.5 4798.6 5135 5003.3 5856.6 3856.2 6691.1 FALSE TRUE 4962.531099 5635.871681 4257.077308 4860.412155 5452.250561 6045.620151 5952.650056 5359.045274 4226.60524 5327.450147 0.931502119 1.057892899 0.799083462 0.912333672 1.023425919 1.134805579 1.117354436 1.005930628 0.79336364 1 12.37922947 -6.76653704 24.47918674 1.024136583 0.925672336 0.138293039 0.10432009 190.7634361 916053.285 0.033963478 0.03971812 1.71E-07 6.76653704 -0.098464247 LIHTLDDRTQLWASEPGT(ph)PPLPTSLPSQNPILK ddPTM_K562_Paclitaxel_30min_R1 2 LIHTLDDRTQLWASEPGTPPLPTSLPSQNPILK 33 1 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;H7C3A1 Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 LIHTLDDRTQLWAS(0.255)EPGT(0.737)PPLPT(0.005)S(0.002)LPSQNPILK;LIHTLDDRTQLWAS(0.025)EPGT(0.943)PPLPT(0.025)S(0.007)LPSQNPILK 90.127 8.25E-10 143793000 3857.3 3390.6 4922.1 4108.8 3107.6 3104.9 3382.8 5124.4 8942.2 6094.1 TRUE FALSE 3911.314101 3760.797174 3679.454979 3845.279958 3530.907732 3655.51042 4024.668641 4689.050234 9801.138265 4852.119075 0.80610431 0.775083446 0.758319184 0.79249497 0.727704262 0.753384318 0.829466173 0.966392243 2.01997068 1 12.24439924 -8.576558463 8.693136764 1.510160072 0.783039045 0.612698012 0.229721491 0.173116355 25.43950534 0.140310386 0.052729869 2.65E-09 8.576558463 -0.727121027 LIIES(ph)PSNTSSTEPA ddPTM_K562_Paclitaxel_30min_R1 1 LIIESPSNTSSTEPA 15 0 P38432 P38432 COIL Coilin 1 LIIES(0.589)PS(0.411)NTSSTEPA 198.14 2.57E-09 20656000 3125.8 3067.8 3496.1 3378.2 2731.7 2816.6 2654.7 3315.3 2727.7 3311.6 TRUE FALSE 3169.570844 3402.752779 2613.466316 3161.537372 3103.803788 3316.084463 3158.415467 3033.644572 2989.707773 2636.694102 1.202100328 1.290537562 0.991190565 1.199053531 1.177157329 1.257667494 1.197869508 1.150548548 1.133884955 1 11.36451449 -9.211448637 1.43333794 1.000572072 1.185781917 0.360784209 0.074347111 0.882347385 3.40433538 0.071841909 0.021184695 6.15E-10 9.211448637 0.185209845 LIIESPS(ph)NTS(ph)STEPA ddPTM_K562_Paclitaxel_30min_R1 1 LIIESPSNTSSTEPA 15 0 P38432 P38432 COIL Coilin 2 LIIES(0.223)PS(0.776)NT(0.119)S(0.408)S(0.278)T(0.196)EPA 138.02 1.82E-05 66662000 1809.6 1492 1585.1 1760.2 1548.9 1612.3 1674.7 2013 2058.8 2017.4 TRUE FALSE 1834.939983 1654.901606 1184.921901 1647.30865 1759.886403 1898.218767 1992.465582 1841.983085 2256.556939 1606.252773 1.142373115 1.030287159 0.737693295 1.025560035 1.095647231 1.181768399 1.240443358 1.146757918 1.404857926 1 10.64948323 -6.968525198 2.164020619 1.207757519 0.967509092 0.358556688 0.132817862 0.327997439 3.105002814 0.047661398 0.053270065 1.08E-07 6.968525198 -0.240248427 LIIESPS(ph)NTSSTEPA ddPTM_K562_Paclitaxel_30min_R1 3 LIIESPSNTSSTEPA 15 0 P38432 P38432 COIL Coilin 1 LIIES(0.079)PS(0.921)NTSSTEPA;LIIES(0.375)PS(0.625)NTSSTEPA;LIIES(0.043)PS(0.957)NTSSTEPA 184.31 9.11E-07 141648000 7323.5 6836.9 8416.4 6883 6660.5 6184.1 5751.5 7144.8 6069.2 6701.2 TRUE FALSE 7426.051595 7583.375863 6291.575727 6441.555187 7567.772863 7280.763306 6842.8171 6537.804644 6652.173778 5335.491762 1.391821397 1.421307764 1.179193223 1.207302996 1.418383385 1.364590863 1.282509168 1.225342468 1.246778006 1 12.38140553 -9.468717151 0.669912598 0.994367421 1.326832999 0.595431027 0.079526955 1.225243754 0.9687845 0.100828414 0.033969381 3.40E-10 9.468717151 0.332465578 LIIESPSNTS(ph)STEPA ddPTM_K562_Paclitaxel_30min_R1 1 LIIESPSNTSSTEPA 15 0 P38432 P38432 COIL Coilin 1 LIIESPS(0.001)NT(0.073)S(0.789)S(0.119)T(0.018)EPA 97.86 0.0062563 9129900 548.56 586.65 657.91 582.31 620.3 419.82 587.99 674.76 541.98 575.67 TRUE FALSE 556.2415325 650.7024309 491.8124836 544.9632429 704.7953618 494.2691824 699.558033 617.4349263 594.0396006 458.348138 1.213578689 1.419668538 1.073010759 1.188972307 1.537685666 1.078370656 1.526259136 1.347087236 1.296044538 1 8.840300002 -4.955588708 16.70359701 1.287821577 0.803876641 0.004961327 0.179686951 28279963.41 271204241.8 0.042518104 434268456.1 1.11E-05 4.955588708 -0.483944936 LILIESR ddPTM_K562_Paclitaxel_30min_R1 2 LILIESR 7 0 P62277 P62277 RPS13 40S ribosomal protein S13 0 ; 143.02 1.06E-06 24987000 6198.8 6364.4 7486.6 7328.5 5694.8 5806.5 6180.4 7124.7 6156.8 7682.2 FALSE TRUE 6285.602325 7059.286715 5596.515237 6858.482811 6470.528174 6836.201248 7353.098636 6519.412264 6748.188149 6116.563423 1.027636254 1.1541263 0.914977063 1.12129677 1.057869873 1.117653946 1.202161758 1.065861958 1.103264641 1 12.57850559 LIPGPLS(ph)PVAR ddPTM_K562_Paclitaxel_30min_R1 4 LIPGPLSPVAR 11 0 P48634-2;P48634-3;P48634 P48634-2 PRRC2A Protein PRRC2A 1 LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR;LIPGPLS(1)PVAR 134.38 0.00081637 5366380000 31420.2 30874.2 37355 33098.7 27832.7 26194.3 28291.1 29556.3 27449.5 30173.8 TRUE FALSE 31860.17974 34245.14957 27924.26825 30975.89753 31623.98495 30839.49132 33659.18854 27045.30783 30086.14712 24024.363 1.32616127 1.425434238 1.162331266 1.289353542 1.316329801 1.283675714 1.401043954 1.125745054 1.252318204 1 14.55221056 -9.249424016 0.792967097 1.000617894 1.310245132 0.548525699 0.082683097 0.741997306 0.948292694 0.08070748 0.028756272 5.63E-10 9.249424016 0.309627238 LIPITGGNARS(ph)PEDQLGK ddPTM_K562_Paclitaxel_30min_R1 1 LIPITGGNARSPEDQLGK 18 1 Q9UK61-2;Q9UK61-3;Q9UK61 Q9UK61-2 FAM208A Protein FAM208A 1 LIPIT(0.06)GGNARS(0.94)PEDQLGK 72.585 0.013968 29568000 1736.6 1624.1 3011.2 2091.2 1375.9 1597.7 1342.4 2093.5 1369.8 2256.4 TRUE FALSE 1760.917758 1801.42473 2250.985318 1957.079792 1563.320874 1881.029662 1597.113392 1915.644108 1501.37541 1796.544441 0.980169328 1.002716487 1.252952761 1.089357851 0.870182133 1.047026513 0.888991864 1.066293749 0.835701793 1 10.81100891 -6.734589811 24.74672811 0.956345023 1.087947144 0.297647187 0.097386892 252.3841533 232616.289 0.028450697 0.036719068 1.84E-07 6.734589811 0.13160212 LIPNAT(ph)GTGTFSPGAS(ph)PGSEAR ddPTM_K562_Paclitaxel_30min_R1 1 LIPNATGTGTFSPGASPGSEAR 22 0 Q16512;Q16512-2;K7EN76;Q16512-3 Q16512 PKN1 Serine/threonine-protein kinase N1 2 LIPNAT(0.883)GT(0.018)GT(0.018)FS(0.079)PGAS(0.869)PGS(0.132)EAR 115.31 3.29E-05 16278000 694.68 543.65 708.41 704.91 744.85 681.3 335.54 645.16 606.55 712.81 TRUE FALSE 704.4076633 603.0075455 529.563134 659.7002277 846.3111804 802.1189891 399.2069634 590.349631 664.8118376 567.5389307 1.24116184 1.062495475 0.933086887 1.162387621 1.491194938 1.413328576 0.70340014 1.040192309 1.171394246 1 9.148575548 -7.749816072 24.99986145 0.982095971 1.207278629 0.285829832 0.184275014 345.1257865 742311.0161 0.078667002 0.060414598 1.78E-08 7.749816072 0.225182658 LIPNATGTGT(ph)FSPGASPGSEAR ddPTM_K562_Paclitaxel_30min_R1 1 LIPNATGTGTFSPGASPGSEAR 22 0 Q16512;Q16512-2;K7EN76;Q16512-3 Q16512 PKN1 Serine/threonine-protein kinase N1 1 LIPNAT(0.001)GT(0.006)GT(0.977)FS(0.016)PGASPGSEAR 213.13 3.34E-36 19944000 427.5 503.53 710.17 645.52 422.04 491.14 695.27 758.36 467.97 535.62 TRUE FALSE 433.486319 558.5071082 530.8788002 604.1192364 479.5289932 578.2367831 827.1938529 693.9325845 512.9206094 426.46035 1.016475081 1.309634315 1.244849141 1.416589459 1.124439806 1.355898111 1.939673531 1.627191331 1.202739269 1 8.736267803 -7.52845585 24.99874469 1.516541079 1.239368678 0.115070111 0.256092857 244.7613989 1097100.228 0.095651144 0.074318289 2.96E-08 7.52845585 -0.277172401 LIPNATGTGTFS(ph)PGASPGSEAR ddPTM_K562_Paclitaxel_30min_R1 1 LIPNATGTGTFSPGASPGSEAR 22 0 Q16512;Q16512-2;K7EN76;Q16512-3 Q16512 PKN1 Serine/threonine-protein kinase N1 1 LIPNATGT(0.003)GT(0.353)FS(0.639)PGAS(0.003)PGS(0.003)EAR 143.14 1.01E-16 15110000 1709.6 1527.4 1938.8 2030.8 1683.3 1439.1 1597.2 1751 1695.3 1792.8 TRUE FALSE 1733.539675 1694.166697 1449.325961 1900.553578 1912.593959 1694.304179 1900.260362 1602.241621 1858.14114 1427.426376 1.2144512 1.186868007 1.015342007 1.331454714 1.339889742 1.186964321 1.331249299 1.122468835 1.301742192 1 10.47920062 -4.719190851 14.76795101 1.211077288 48.57628352 0 0.120677137 6387.802667 335945.8933 0.028353101 84.42779068 1.91E-05 4.719190851 47.36520623 LIRDFQEYVEPGEDFPAS(ph)PQRR ddPTM_K562_Paclitaxel_30min_R1 4 LIRDFQEYVEPGEDFPASPQRR 22 2 Q9Y6G9;C9JGM7 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 LIRDFQEYVEPGEDFPAS(1)PQRR;LIRDFQEYVEPGEDFPAS(1)PQRR;LIRDFQEYVEPGEDFPAS(1)PQRR;LIRDFQEYVEPGEDFPAS(1)PQRR 138.46 1.42E-15 625010000 4450.19 4556 5052.25 4685.69 4126.36 4403.83 3841.23 5201.3 6928.4 6139.9 TRUE FALSE 4512.50639 5053.439487 3776.747002 4385.170816 4688.440092 5184.787418 4570.08334 4759.4171 7593.903777 4888.58501 0.923070046 1.03372233 0.772564453 0.897022514 0.959058722 1.060590622 0.934847882 0.973577649 1.553395054 1 12.25520123 -8.617748083 10.37790935 1.275804159 0.941940771 0.461867675 0.143892943 0.285747768 28.98002807 0.090833298 0.034224611 2.41E-09 8.617748083 -0.333863388 LIRGPGENGDDS(ph) ddPTM_K562_Paclitaxel_30min_R1 1 LIRGPGENGDDS 12 1 Q6IBS0 Q6IBS0 TWF2 Twinfilin-2 1 LIRGPGENGDDS(1) 122.46 0.0059575 35286000 2671.2 2777.5 3301.4 2888.8 2190.9 2956.8 2254.8 2684.3 3090.2 2952 TRUE FALSE 2708.605041 3080.756843 2467.920739 2703.525298 2489.337672 3481.146964 2682.636529 2456.25196 3387.027517 2350.38078 1.15241116 1.310747973 1.050008901 1.150249917 1.059121013 1.481099146 1.14136252 1.045044267 1.441054806 1 11.19867879 -3.846824134 16.99000871 1.186973862 1.184241969 0 0.161622848 0 0 0.035178387 0 0.00014229 3.846824134 -0.002731893 LIS(ph)SVEDFTEFV ddPTM_K562_Paclitaxel_30min_R1 1 LISSVEDFTEFV 12 0 P49815;A0A2R8Y5F1;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;X5D2U8;A0A2R8YGU4;A0A2R8Y6C9;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;P49815-4 P49815 TSC2 Tuberin 1 LIS(0.609)S(0.391)VEDFTEFV 131.82 0.0006792 11395000 584.22 546.2 526.37 418.06 579.74 516.65 488.15 647.66 459.43 740.18 TRUE FALSE 592.4008825 605.8359631 393.4813834 391.2475028 658.7104031 608.2706234 580.7739142 592.6372404 503.5603043 589.3309097 1.005209251 1.028006428 0.667674777 0.663884239 1.117725869 1.032137655 0.985480152 1.005610313 0.854461044 1 9.202934126 -6.775554627 24.99999075 1.000473633 0.842143184 0.272910291 0.12636181 353.3222979 625778.557 0.042819381 0.048783537 1.68E-07 6.775554627 -0.158330449 LISDS(ph)VER ddPTM_K562_Paclitaxel_30min_R1 1 LISDSVER 8 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 LIS(0.001)DS(0.999)VER 107.79 0.010972 8211100 1379.6 1364.7 1712.4 1454.9 1228.3 1239.2 1299.4 1851.6 1070.4 2033.6 TRUE FALSE 1398.918656 1513.702561 1280.083441 1361.589226 1395.615255 1458.954721 1545.954367 1694.295023 1173.216703 1619.151204 0.863982717 0.934874123 0.790589192 0.840927779 0.861942512 0.901061443 0.954793081 1.04640939 0.724587488 1 10.661022 -7.437875209 3.232593393 0.934844716 0.857991751 0.14040545 0.084962625 0.506091671 10.17197242 0.031843528 0.026791502 3.65E-08 7.437875209 -0.076852965 LISS(ph)VEDFTEFV ddPTM_K562_Paclitaxel_30min_R1 1 LISSVEDFTEFV 12 0 P49815;A0A2R8Y5F1;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;X5D2U8;A0A2R8YGU4;A0A2R8Y6C9;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;P49815-4 P49815 TSC2 Tuberin 1 LIS(0.021)S(0.979)VEDFTEFV 112.83 0.0050241 10706000 2247.9 2002.6 2462.2 2345.2 2120.5 2126.9 1712.7 2172.4 2029.6 2494.2 TRUE FALSE 2279.377535 2221.25064 1840.587158 2194.789369 2409.348 2504.075852 2037.675884 1987.84106 2224.552148 1985.880671 1.147791793 1.118521708 0.926836735 1.105197004 1.213239061 1.260939737 1.026081735 1.000987164 1.120184199 1 10.95556322 -11.25592682 4.233642202 0.999928997 1.100327663 0.097187565 0.093288357 6.79E-05 1.19E-05 0.098045832 0.023762801 5.55E-12 11.25592682 0.100398667 LISWYDNEFGYSNR ddPTM_K562_Paclitaxel_30min_R1 2 LISWYDNEFGYSNR 14 0 E7EUT5;P04406-2;P04406 E7EUT5 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ; 195.72 5.79E-08 130488000 2490.9 2368.5 2068.8 2090.6 2110.87 1691.47 3008.8 3582.6 2221.33 4156.1 FALSE TRUE 2525.780285 2627.10084 1546.505853 1956.518273 2398.406231 1991.428455 3579.704093 3278.235768 2434.698672 3309.084539 0.76328672 0.793905628 0.46735157 0.59125666 0.724794487 0.601806461 1.081780792 0.990677551 0.735762004 1 11.69221643 -7.752135835 24.99997289 0.951278224 0.654750556 0.58949452 0.120585117 143.6490251 386006.5396 0.048288357 0.036879605 1.77E-08 7.752135835 -0.296527668 LIT(ph)AADTT(ph)AEQRR ddPTM_K562_Paclitaxel_30min_R1 1 LITAADTTAEQRR 13 1 Q9NPF5;Q5TG40 Q9NPF5 DMAP1 DNA methyltransferase 1-associated protein 1 2 LIT(0.512)AADT(0.512)T(0.977)AEQRR 90.861 0.025066 44802000 1520.6 2083.1 2031.5 2066.6 1945.3 1787.2 1978.6 1732.2 1150.5 2342.9 TRUE FALSE 1541.893091 2310.539903 1518.6227 1934.057526 2210.282794 2104.134826 2354.029021 1585.038798 1261.010666 1865.415694 0.826568092 1.238619312 0.814093451 1.03679707 1.184874128 1.127971011 1.261932677 0.849697364 0.675994455 1 10.86528144 -8.424448698 8.269222442 0.81335032 1.071770076 0.292727569 0.161689864 0.344019828 25.86466176 0.08703446 0.041510892 3.76E-09 8.424448698 0.258419756 LITNQS(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 LITNQSK 7 0 A0JNW5-2;A0JNW5 A0JNW5-2 UHRF1BP1L UHRF1-binding protein 1-like 1 LIT(0.046)NQS(0.954)K 88.029 0.02327 43213000 183.62 116.06 159.85 240.11 111.59 204.42 139.56 146.62 0 164.68 TRUE FALSE 186.1912465 128.7318233 119.4938905 224.7104193 126.7904472 240.6710168 166.0407814 134.1637158 0 131.1181256 1.420026756 0.981800363 0.911345323 1.713801339 0.966994049 1.835528198 1.26634499 1.023227835 0 1 7.034723325 -8.561862695 7.362747271 0.495729716 1.28589977 0.427855199 0.365865125 0.192943098 28.81634222 0.238787644 0.089842622 2.74E-09 8.561862695 0.790170054 LITPPPPPPS(ph)PERVGISSIDISQSR ddPTM_K562_Paclitaxel_30min_R1 1 LITPPPPPPSPERVGISSIDISQSR 25 1 Q96HE9;J3QKY4;J3QR53 Q96HE9 PRR11 Proline-rich protein 11 1 LITPPPPPPS(0.962)PERVGIS(0.01)S(0.013)IDIS(0.005)QS(0.01)R 68.676 0.0013075 30035000 1204.4 1167.1 1408.3 1169.7 1172.8 1167.2 1099.6 1290.9 1484.6 1194.2 TRUE FALSE 1221.265316 1294.527925 1052.757247 1094.680677 1332.555216 1374.186532 1308.24336 1181.229987 1627.202463 950.8213845 1.284431898 1.361483814 1.107208214 1.151300018 1.401477961 1.445262543 1.375908642 1.242325853 1.711365026 1 9.89303054 -6.774364577 24.96659956 1.37962588 1.22728313 0.118872555 0.1786854 435.7013982 841607.2022 0.052988433 0.060447549 1.68E-07 6.774364577 -0.15234275 LITPPPPPPSPERVGIS(ph)SIDISQSR ddPTM_K562_Paclitaxel_30min_R1 1 LITPPPPPPSPERVGISSIDISQSR 25 1 Q96HE9;J3QKY4;J3QR53 Q96HE9 PRR11 Proline-rich protein 11 1 LITPPPPPPS(0.138)PERVGIS(0.313)S(0.313)IDIS(0.103)QS(0.134)R 66.365 0.0018529 27573000 950.45 804.06 1094.1 1088.3 952 805.35 702.11 886.67 927.64 1264.7 TRUE FALSE 963.7592324 891.84999 817.8809233 1018.501309 1081.678517 948.1675148 835.3317072 811.3418491 1016.743967 1006.953446 0.957104061 0.885691383 0.812233104 1.01146812 1.074209063 0.941620011 0.829563383 0.805739185 1.009722913 1 9.97578127 -5.216704391 0.004701241 1.831832237 1.99E-07 0.021976041 0.088920085 245489.2837 177.5914144 33410.70512 35817.08222 6.07E-06 5.216704391 -1.831832038 LIVAYVDDLDRR ddPTM_K562_Paclitaxel_30min_R1 2 LIVAYVDDLDRR 12 1 O14776;O14776-2 O14776 TCERG1 Transcription elongation regulator 1 0 ; 230.41 5.91E-31 14652300 3407.1 3757.2 4188 4011.5 3155.6 3217.1 4007.9 4140.1 3656.8 5156.5 FALSE TRUE 3454.809912 4167.423802 3130.687603 3754.220345 3585.446145 3787.607515 4768.378102 3788.372663 4008.051979 4105.60247 0.841486709 1.015057798 0.762540364 0.914413992 0.873305726 0.922546092 1.161432004 0.922732459 0.976239665 1 12.00337823 -7.538427092 24.99923187 1.013423089 0.885413866 0.375258259 0.081557876 264.6410528 425496.4055 0.030176724 0.02338243 2.89E-08 7.538427092 -0.128009223 LKATVTPS(ph)PVK ddPTM_K562_Paclitaxel_30min_R1 1 LKATVTPSPVK 11 1 Q9H1E3;Q9H1E3-2 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 LKATVT(0.004)PS(0.996)PVK 77.24 0.029536 136920000 6409.2 4958.1 13520 6985 5384.1 3958.1 3790.5 7254.7 4268.4 10024 TRUE FALSE 6498.948574 5499.442125 10106.70879 6537.013364 6117.505574 4660.013461 4509.727587 6638.367953 4678.398892 7981.103298 0.814292001 0.689057881 1.26632978 0.819061365 0.766498734 0.58388086 0.565050648 0.831760686 0.586184481 1 12.96237248 -6.733433038 3.325369761 0.695010768 0.916249975 0.180405386 0.185421494 0.368374186 8.439060179 0.057915758 0.073121692 1.85E-07 6.733433038 0.221239208 LKENTNHDDSSRDSYSSDR ddPTM_K562_Paclitaxel_30min_R1 1 LKENTNHDDSSRDSYSSDR 19 2 O14646;O14646-2 O14646;O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 0 43.208 0.0312 3697600 1922.6 1703.3 3290.7 2451.6 1516.2 1515.7 1286 2363.9 2422.1 2555.6 FALSE TRUE 1949.522332 1889.272054 2459.922086 2294.365349 1722.732109 1784.488114 1530.011787 2163.07194 2654.753527 2034.767317 0.958105782 0.92849538 1.208945153 1.127581188 0.846648211 0.876998612 0.75193452 1.063056165 1.304696367 1 10.99064811 -8.522440746 24.99682497 1.162857596 0.960706633 0.237709366 0.141688671 24.65869795 1407796.054 0.099919055 0.038701539 3.00E-09 8.522440746 -0.202150964 LKGQEDSLASAVDAATEQKTCDS(ph)D ddPTM_K562_Paclitaxel_30min_R1 2 LKGQEDSLASAVDAATEQKTCDSD 24 2 J3KR35;Q8WUD4 J3KR35 CCDC12 Coiled-coil domain-containing protein 12 1 LKGQEDSLASAVDAAT(0.001)EQKT(0.042)CDS(0.957)D;LKGQEDSLASAVDAATEQKT(0.018)CDS(0.982)D 130.62 7.85E-13 109973000 12127.2 8347.8 24699 12126.2 8914.4 6466.6 6742.1 11465 16022.5 14364.7 TRUE FALSE 12297.01822 9259.241034 18463.43198 11348.47981 10128.6922 7613.360714 8021.378279 10490.97669 17561.53272 11437.16626 1.075180507 0.809574752 1.614336241 0.992245767 0.885594559 0.665668448 0.701343156 0.917270629 1.535479359 1 13.48144202 -6.507674847 24.664174 0.921735911 1.159452585 0.095809362 0.288913717 1325.911417 2150930.058 0.085261648 0.121800143 3.11E-07 6.507674847 0.237716674 LKLS(ph)PS(ph)PSSR ddPTM_K562_Paclitaxel_30min_R1 1 LKLSPSPSSR 10 1 P20700;Q03252 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 2 LKLS(0.816)PS(0.531)PS(0.317)S(0.336)R 126.34 0.019334 115660000 9772.3 8409.9 17254 10686 7281.4 6304.1 6351.9 9770.8 8892.2 11644 TRUE FALSE 9909.14235 9328.121322 12898.01431 10000.64779 8273.249955 7422.043621 7557.139866 8940.709553 9746.335541 9270.946408 1.068838273 1.006167107 1.391229518 1.078708402 0.892384616 0.800570222 0.815142223 0.96437938 1.051277304 1 13.17850091 -6.654155489 4.611133197 0.907974348 1.153766907 0.450558396 0.117898293 0.195763798 7.057150826 0.037336055 0.048470553 2.22E-07 6.654155489 0.245792559 LKLSPS(ph)PS(ph)SR ddPTM_K562_Paclitaxel_30min_R1 1 LKLSPSPSSR 10 1 P20700;Q03252 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 2 LKLS(0.485)PS(0.516)PS(0.611)S(0.388)R 136.27 0.012799 109630000 11682 9540.8 20182 12845 8761.5 8487.6 7726.7 11461 10017 14164 TRUE FALSE 11845.58404 10582.49681 15086.80449 12021.17919 9954.964633 9992.756688 9192.800989 10487.31651 10979.17761 11277.36903 1.050385424 0.938383482 1.337794698 1.065956001 0.882738218 0.886089359 0.815154755 0.929943544 0.973558423 1 13.46114291 -6.690462608 5.271798945 0.904755607 1.10788557 0.427006207 0.104299473 0.193054209 9.818928245 0.03202965 0.041195141 2.04E-07 6.690462608 0.203129963 LKNGFPHPEPDCNPSEAAS(ph)EESNSEIEQEIPVEQK ddPTM_K562_Paclitaxel_30min_R1 2 LKNGFPHPEPDCNPSEAASEESNSEIEQEIPVEQK 35 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 LKNGFPHPEPDCNPS(0.033)EAAS(0.322)EES(0.322)NS(0.322)EIEQEIPVEQK;LKNGFPHPEPDCNPS(0.014)EAAS(0.329)EES(0.329)NS(0.329)EIEQEIPVEQK 56.963 0.00041906 47129000 3383.1 2650 9255 4061.5 3307.4 2317.33 2359.49 4167.6 3197.76 5446.5 TRUE FALSE 3430.473838 2939.335962 6918.460786 3801.013569 3757.923875 2728.275939 2807.19091 3813.536367 3504.919136 4336.50031 0.791069663 0.677812925 1.595401889 0.876516383 0.86657987 0.629142337 0.647340184 0.879404149 0.8082368 1 12.0823155 -6.65183974 3.9301129 0.781648917 1.019144801 0.119908025 0.247728999 0.442977333 12.70288285 0.077631817 0.101418585 2.23E-07 6.65183974 0.237495884 LKPGGVGAPSSS(ph)SPSPSPSAR ddPTM_K562_Paclitaxel_30min_R1 2 LKPGGVGAPSSSSPSPSPSAR 21 1 Q92797 Q92797 SYMPK Symplekin 1 LKPGGVGAPSSS(0.978)S(0.022)PSPSPSAR;LKPGGVGAPS(0.001)S(0.003)S(0.425)S(0.262)PS(0.252)PS(0.035)PS(0.023)AR 181.35 1.20E-22 87302000 3984.4 3287.9 6823.9 4640.9 2998.5 2712.3 2573.8 4459.6 2244 4800.2 TRUE FALSE 4040.193893 3646.884041 5101.122048 4343.253446 3406.946465 3193.288322 3062.165114 4080.729144 2459.546226 3821.916605 1.057111997 0.954202935 1.334702605 1.136407173 0.891423549 0.835520147 0.801211913 1.067717997 0.643537387 1 11.90008058 -6.782192957 6.575783248 0.870068483 1.124475985 0.434287587 0.138333159 0.153921477 24.56023269 0.042075249 0.049435518 1.65E-07 6.782192957 0.254407502 LKQEQGVESEPLFPILKQEPQS(ph)PSR ddPTM_K562_Paclitaxel_30min_R1 1 LKQEQGVESEPLFPILKQEPQSPSR 25 2 Q8WUQ7;Q8WUQ7-2 Q8WUQ7 CACTIN Cactin 1 LKQEQGVESEPLFPILKQEPQS(0.561)PS(0.439)R 45.445 0.025103 7664500 537.95 514.61 1073.7 495.74 233.09 438.99 397.43 460.44 751 692.84 TRUE FALSE 545.4829597 570.7968601 802.6311556 463.9454553 264.8408042 516.8387128 472.8402678 421.322748 823.1369056 551.6388277 0.988840764 1.034729304 1.454993948 0.841031182 0.480098193 0.936915037 0.857155523 0.763765578 1.492166367 1 9.107580196 LKQLMEQDASSS(ph)PSAQVIGLK ddPTM_K562_Paclitaxel_30min_R1 2 LKQLMEQDASSSPSAQVIGLK 21 1 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3;Q9H4L5-6;Q9H4L5-2;Q9H4L5-8;Q9H4L5-4 Q9H4L5-5;Q9H4L5-6 OSBPL3 Oxysterol-binding protein-related protein 3 1 LKQLMEQDAS(0.005)S(0.114)S(0.783)PS(0.098)AQVIGLK;LKQLMEQDAS(0.001)S(0.053)S(0.867)PS(0.079)AQVIGLK 85.61 0.00089783 29077000 7499.2 5750.9 14456.1 7796 5891.6 4942.38 5570.8 7982 9752.8 11582 TRUE FALSE 7604.211937 6378.80271 10806.47876 7295.999454 6694.135666 5818.841699 6627.830218 7303.879278 10689.60002 9221.582043 0.824610344 0.69172542 1.171868202 0.791187393 0.725920524 0.631002541 0.718730277 0.792041891 1.159193723 1 13.17079856 -8.7515727 24.93689259 1.079596853 0.792389764 0.391457836 0.142736818 183.3691886 463452.7435 0.104297153 0.038359979 1.77E-09 8.7515727 -0.287207088 LKS(ph)MT(ph)INFS(ph)S(ph)LNR ddPTM_K562_Paclitaxel_30min_R1 1 LKSMTINFSSLNR 13 1 A0A087WXL3;O75417-2;O75417 A0A087WXL3 POLQ DNA polymerase theta 4 LKS(1)MT(1)INFS(1)S(1)LNR 60.489 0.026341 19275000 67.071 0 51.961 117.31 0 0 0 0 0 0 TRUE FALSE 68.01020093 0 38.8428029 109.7862617 0 0 0 0 0 0 0 LLAAGS(ph)PLAHSR ddPTM_K562_Paclitaxel_30min_R1 4 LLAAGSPLAHSR 12 0 Q8IZN3-2;Q8IZN3 Q8IZN3-2 ZDHHC14 Probable palmitoyltransferase ZDHHC14 1 LLAAGS(1)PLAHSR;LLAAGS(1)PLAHSR;LLAAGS(1)PLAHSR;LLAAGS(1)PLAHSR 122.33 0.0014926 330527000 14721 14423.3 15747.1 14145.5 11997.6 12733.2 13242 15266.9 12100.2 15518.1 TRUE FALSE 14927.13942 15998.08467 11771.54985 13238.27094 13631.87624 14991.25424 15754.60037 13969.88155 13262.47828 12355.5027 1.208136956 1.29481455 0.952737426 1.071447375 1.103304056 1.213326127 1.275108003 1.130660718 1.07340661 1 13.59286609 -8.932479584 2.650115584 1.002533831 1.155856783 0.22038977 0.095458265 0.42559792 6.452647431 0.098829125 0.026912282 1.17E-09 8.932479584 0.153322952 LLADQAEARR ddPTM_K562_Paclitaxel_30min_R1 2 LLADQAEARR 10 1 J3QR09;J3KTE4;P84098 J3QR09 RPL19 Ribosomal protein L19;60S ribosomal protein L19 0 ; 135.8 0.0013434 18070900 3686.5 3696.1 4442.2 3824.2 3317 3398.1 3296.2 4336 5428.8 4385.1 FALSE TRUE 3738.122374 4099.652697 3320.71167 3578.932928 3768.831557 4000.705323 3921.636743 3967.629736 5950.260497 3491.414213 1.070661384 1.174209775 0.951107908 1.025066838 1.079457013 1.145869576 1.123222999 1.136396169 1.704255105 1 11.76959581 -8.549125684 24.98502414 1.374860561 1.08371838 0.284722932 0.168477734 238.7522383 227268.7573 0.104113378 0.039353474 2.82E-09 8.549125684 -0.291142181 LLAS(ph)PSSR ddPTM_K562_Paclitaxel_30min_R1 4 LLASPSSR 8 0 Q15003;C9JZP1;C9J470;E9PHA2 Q15003 NCAPH Condensin complex subunit 2 1 LLAS(0.499)PS(0.499)S(0.001)R;LLAS(0.892)PS(0.106)S(0.001)R;LLAS(0.932)PS(0.05)S(0.018)R;LLAS(0.661)PS(0.201)S(0.138)R 104.01 0.013018 101258800 11118.2 10142.1 12124.6 11385.1 9837.4 9264.7 8640.1 10566.6 10059.3 11429.6 TRUE FALSE 11273.8891 11249.44878 9063.594775 10654.91064 11177.42043 10907.66446 10279.51387 9668.901375 11025.54071 9100.241246 1.23885607 1.236170391 0.995973022 1.170838262 1.228255397 1.19861267 1.129586963 1.062488467 1.211565761 1 13.15168908 -15 0.195847222 0.290334225 1.18703306 0.300183099 0.075870672 189.5161158 1.866876287 52.51796224 0.200527853 1.00E-15 15 0.896698835 LLAS(ph)QGS(ph)QGAPLLST(ph)PKR ddPTM_K562_Paclitaxel_30min_R1 1 LLASQGSQGAPLLSTPKR 18 1 H3BRB3;Q14807-2;Q14807 H3BRB3 KIF22 Kinesin-like protein;Kinesin-like protein KIF22 3 LLAS(1)QGS(1)QGAPLLS(0.273)T(0.727)PKR 52.754 0.028606 66775000 2305.5 2037.5 2606.9 2407.6 1929.7 2373 2304.8 2605.3 2529 2616.6 TRUE FALSE 2337.784113 2259.96114 1948.755853 2253.187312 2192.55781 2793.818231 2742.123768 2383.963503 2771.92175 2083.335484 1.122135216 1.084780228 0.935401844 1.081528793 1.052426663 1.341031367 1.31621805 1.1443013 1.330521067 1 11.02467946 -7.239859133 23.85963735 1.24104591 1.05169602 0.392532514 0.10563499 419.7926855 464132.6107 0.033548153 0.03351175 5.76E-08 7.239859133 -0.18934989 LLAS(ph)SPALPSSGAQAR ddPTM_K562_Paclitaxel_30min_R1 1 LLASSPALPSSGAQAR 16 0 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 LLAS(0.5)S(0.5)PALPSSGAQAR 212.43 1.05E-22 33105000 6205.1 5837.5 6674.7 6156.7 4978.5 5275.9 4766.7 5912 5763.6 6085.2 TRUE FALSE 6291.990544 6474.857991 4989.589433 5761.836818 5656.655987 6211.506788 5671.156441 5409.738698 6317.219532 4845.0329 1.298647641 1.336390923 1.029836027 1.18922553 1.167516527 1.282036039 1.170509377 1.116553553 1.303854827 1 12.24229075 -12.36333739 1.893220215 5.27E-05 1.205170009 0.322952626 0.091144072 1317020.147 136944.0591 5628288.887 0.023472101 4.33E-13 12.36333739 1.205117353 LLASS(ph)PALPSSGAQAR ddPTM_K562_Paclitaxel_30min_R1 1 LLASSPALPSSGAQAR 16 0 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 LLAS(0.448)S(0.552)PALPSSGAQAR 212.03 1.10E-22 33052000 2390.6 2652 3001.9 2714.3 2032.7 1868 2013.2 2562.3 2252.2 2718.6 TRUE FALSE 2424.075776 2941.554328 2244.033218 2540.216947 2309.588154 2199.263572 2395.19419 2344.616622 2468.533873 2164.547828 1.119899382 1.35896943 1.036721476 1.173555472 1.067007217 1.016038335 1.106556372 1.083190028 1.14043859 1 11.07984996 -5.779122991 24.99999192 1.082745342 1.23943448 0.433087628 0.073744123 183.7375656 259757.1278 0.018064903 0.037730933 1.66E-06 5.779122991 0.156689139 LLDEEEATDNDLR ddPTM_K562_Paclitaxel_30min_R1 1 LLDEEEATDNDLR 13 0 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 181.4 0.0013611 6342000 617.62 555.87 625.29 458.35 503.79 526.27 539.9 688.47 512.93 698.49 FALSE TRUE 626.2685855 616.5617664 467.427806 428.9534825 572.4147272 619.5965953 642.3432065 629.9801762 562.1992183 556.1373546 1.126104155 1.108650159 0.840489858 0.771308525 1.02926862 1.114107136 1.155008203 1.132778029 1.01089994 1 9.119297433 -6.997411996 24.99951685 1.092752343 0.955585957 0.208326817 0.109975942 128.1153015 1237536.943 0.037713263 0.042519551 1.01E-07 6.997411996 -0.137166386 LLDHMAPPPVADQAS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 6 LLDHMAPPPVADQASPR 17 0 A0A0C4DFS6;Q9C004 A0A0C4DFS6 SPRY4 Protein sprouty homolog 4 1 LLDHMAPPPVADQAS(1)PR;LLDHMAPPPVADQAS(1)PR;LLDHMAPPPVADQAS(1)PR;LLDHMAPPPVADQAS(1)PR;LLDHMAPPPVADQAS(1)PR;LLDHMAPPPVADQAS(1)PR 164.2 5.59E-09 184490000 15546.7 14935.7 17679.7 16598.7 13756.5 14004.8 17684.8 20887.5 11947.63 22748.8 TRUE FALSE 15764.40177 16566.43024 13216.24108 15534.13368 15630.3682 16488.35464 21040.39848 19112.9765 13095.25324 18112.58207 0.870356402 0.914636586 0.729671839 0.857643246 0.862956377 0.910326014 1.161645446 1.055232016 0.722992072 1 14.14470461 -7.528745268 24.98601424 0.99620087 0.849051356 0.250677104 0.111708563 214.3046003 912729.1831 0.043250737 0.03360077 2.96E-08 7.528745268 -0.147149514 LLDPSAEIIVLKEPPT(ph)IRPNSPYDLCSR ddPTM_K562_Paclitaxel_30min_R1 1 LLDPSAEIIVLKEPPTIRPNSPYDLCSR 28 2 G3V1N5;B4E3L3;Q96RU2-2;Q96RU2 G3V1N5 USP28 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 28 1 LLDPSAEIIVLKEPPT(0.698)IRPNS(0.208)PY(0.076)DLCS(0.017)R 58.802 0.028821 12967000 2015.6 1677.7 2984.9 2225.7 1617.9 1306.7 1503.6 2034.2 2119.1 2463.8 TRUE FALSE 2043.824619 1860.87696 2231.325078 2082.953564 1838.285371 1538.424898 1788.900251 1861.382013 2322.649023 1961.676208 1.041876641 0.948615756 1.137458399 1.06182333 0.937099285 0.784239974 0.911924325 0.948873217 1.184012435 1 10.93787122 -5.229958752 21.03048765 0.985111223 1.041877376 0.017456995 0.109331432 7391.313895 4937020.985 0.029283747 2.464292968 5.89E-06 5.229958752 0.056766153 LLDPSAEIIVLKEPPTIRPNS(ph)PYDLCSR ddPTM_K562_Paclitaxel_30min_R1 1 LLDPSAEIIVLKEPPTIRPNSPYDLCSR 28 2 G3V1N5;B4E3L3;Q96RU2-2;Q96RU2 G3V1N5 USP28 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 28 1 LLDPSAEIIVLKEPPT(0.248)IRPNS(0.58)PY(0.165)DLCS(0.008)R 62.028 0.00097039 33130000 1210.4 1654.2 2469.4 1652.5 1072.4 1447.5 1411.5 1873.6 1732.1 2085.2 TRUE FALSE 1227.349334 1834.81115 1845.969429 1546.516046 1218.479036 1704.193801 1679.324756 1714.425985 1898.475944 1660.235095 0.739262372 1.105151406 1.111872309 0.931504249 0.733919575 1.026477398 1.011498167 1.032640492 1.143498261 1 10.69717183 -7.49602248 24.9394191 1.045251982 0.938702737 0.184038662 0.123472962 1509.048063 1401343.373 0.045951587 0.040405503 3.19E-08 7.49602248 -0.106549244 LLDQQNPDEDFS(ph) ddPTM_K562_Paclitaxel_30min_R1 1 LLDQQNPDEDFS 12 0 P46108 P46108 CRK Adapter molecule crk 1 LLDQQNPDEDFS(1) 136.38 0.00028926 23057000 3399.3 3304.9 4705.2 3609.2 3305.1 3400.2 3307 3590.3 3148.9 3903.9 TRUE FALSE 3446.900688 3665.740158 3517.314067 3377.722066 3755.310576 4003.177729 3934.485986 3285.281605 3451.365915 3108.283037 1.108940417 1.179345676 1.131593882 1.0866842 1.208162362 1.287906436 1.265806858 1.05694416 1.110376975 1 11.60190216 -8.290803033 24.08342833 1.062745358 1.180731235 0.438425202 0.064908727 522.8840435 428854.2212 0.039194002 0.01883427 5.12E-09 8.290803033 0.117985876 LLEADSKSMRS(ph)MNGS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 LLEADSKSMRSMNGSR 16 2 Q96CN4;Q96CN4-2 Q96CN4 EVI5L EVI5-like protein 2 LLEADSKS(0.012)MRS(0.988)MNGS(1)R 93.237 0.0058495 9417800 173.62 176.35 236.16 215.43 50.902 179.43 185.6 205.49 266.17 193.74 TRUE FALSE 176.0512157 195.6044894 176.5384872 201.613284 57.83571418 211.2493912 220.8166311 188.0323419 291.7368178 154.2556817 1.141294854 1.26805371 1.14445371 1.307007184 0.374934094 1.369475593 1.431497555 1.218965421 1.891254926 1 7.269179818 -7.484303317 24.99883301 1.403221552 1.058557762 0.214335878 0.319795962 856.6866114 555177.1563 0.110902469 0.097787351 3.28E-08 7.484303317 -0.34466379 LLEAISS(ph)LDGK ddPTM_K562_Paclitaxel_30min_R1 2 LLEAISSLDGK 11 0 Q9BVJ6-3;Q9BVJ6 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 LLEAIS(0.031)S(0.969)LDGK;LLEAIS(0.31)S(0.69)LDGK 168.82 0.00025644 9148400 4218.3 3759.2 6212.8 4339.8 3144.3 2848.9 2690.3 4281.8 3623.8 5166.5 TRUE FALSE 4277.369215 4169.642169 4644.301801 4061.464652 3572.606893 3354.112414 3200.770381 3918.034364 3971.882182 4113.564464 1.039820635 1.013632387 1.129021276 0.987334631 0.868494204 0.815378595 0.778101427 0.95246699 0.965557296 1 12.00617334 -6.588797281 4.118742354 0.884951027 1.056970141 0.526276975 0.069639933 0.169513271 5.751201261 0.022157053 0.02956144 2.58E-07 6.588797281 0.172019114 LLEDS(ph)EES(ph)SEETVSR ddPTM_K562_Paclitaxel_30min_R1 2 LLEDSEESSEETVSR 15 0 A2AB15;A0A140T947;O60231 A2AB15 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 2 LLEDS(0.897)EES(0.846)S(0.256)EET(0.001)VSR;LLEDS(0.991)EES(0.844)S(0.165)EETVSR 107.69 0.014542 590250000 9216.4 8709.7 11986.4 10013.9 7773.4 8132.3 8184.9 9274.8 9035.4 9888.5 TRUE FALSE 9345.458035 9660.6545 8960.285074 9371.653275 8832.268685 9574.449222 9737.942047 8486.847849 9903.290541 7873.218272 1.186993388 1.227027394 1.138071468 1.190320521 1.121811739 1.216078215 1.236843907 1.07793885 1.257845293 1 12.94273776 -11.53361343 3.045651671 0.993112458 1.181378954 0.515865031 0.053335168 21485712.88 27072737.4 1237511.814 0.012532818 2.93E-12 11.53361343 0.188266496 LLEDS(ph)EESSEETVSR ddPTM_K562_Paclitaxel_30min_R1 2 LLEDSEESSEETVSR 15 0 A2AB15;A0A140T947;O60231 A2AB15 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 1 LLEDS(0.988)EES(0.012)SEETVSR;LLEDS(1)EESSEETVSR 288.45 5.46E-148 65041000 2800 2478.04 3910.4 3222.73 2919.17 2915.4 2271.09 2928.66 2186.35 2945.68 TRUE FALSE 2839.208639 2748.600787 2923.171157 3016.038522 3316.810376 3432.405256 2702.017472 2679.852053 2396.358686 2345.348799 1.21056989 1.171936894 1.246369477 1.285965876 1.414207719 1.46349458 1.152074895 1.142624097 1.021749382 1 11.19558678 -8.320397547 1.917476471 1.021827139 1.292331861 0.601552065 0.089698271 0.285071749 1.924637415 0.077724815 0.029678148 4.78E-09 8.320397547 0.270504723 LLEENETEAVTVPTPS(ph)PTPVR ddPTM_K562_Paclitaxel_30min_R1 1 LLEENETEAVTVPTPSPTPVR 21 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 1 LLEENETEAVTVPT(0.007)PS(0.731)PT(0.262)PVR 289.72 0 0 10230 9959.9 12490 10695 8623 8786.1 9177 10814 9044.3 11038 TRUE FALSE 10373.25156 11047.35556 9336.745026 10009.07057 9797.598589 10344.19147 10918.28784 9895.283201 9913.045426 8788.449541 1.180327828 1.257031233 1.062388193 1.138889234 1.114826744 1.177021205 1.24234517 1.125941858 1.127962945 1 13.10139295 -9.242230351 1.700710821 1.000433016 1.16356787 0.446286932 0.054527887 0.882221899 4.336587473 0.054367866 0.015468041 5.72E-10 9.242230351 0.163134854 LLEGEEER ddPTM_K562_Paclitaxel_30min_R1 1 LLEGEEER 8 0 P02545-6;P02545;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;Q3BDU5;P02545-2;Q5TCI8;P20700;E9PBF6;Q03252 P02545-6;Q3BDU5;P20700;Q03252 LMNA;LMNB1;LMNB2 Prelamin-A/C;Lamin-A/C;Lamin-B1;Lamin-B2 0 130.27 0.0012848 15899000 1353.6 1251 2145.8 1718.4 1175.1 1482.5 1427.5 1518.9 1253.9 1491.5 FALSE TRUE 1372.554576 1387.588411 1604.066251 1608.189515 1335.168515 1745.40056 1698.360673 1389.859964 1374.342698 1187.531481 1.155804792 1.168464527 1.350756823 1.354228954 1.124322627 1.469772033 1.430160547 1.170377364 1.157310538 1 10.21375004 -10.72939836 10.1740214 0.999988195 1.270931691 0.299546896 0.12102507 0 0 0.122810491 0.029785919 1.86E-11 10.72939836 0.270943496 LLEKDDSVIVEDSLSEPLGYCDGS(ph)GPEPHSPGGIR ddPTM_K562_Paclitaxel_30min_R1 1 LLEKDDSVIVEDSLSEPLGYCDGSGPEPHSPGGIR 35 1 F8VPL6;Q9H2S9-2;Q9H2S9 F8VPL6 IKZF4 Zinc finger protein Eos 1 LLEKDDSVIVEDSLSEPLGY(0.035)CDGS(0.541)GPEPHS(0.423)PGGIR 87.749 2.20E-09 13385000 3663.6 3336.2 6774.9 4249.2 3213.8 3181.2 2862.4 4928 2785.2 5772.2 TRUE FALSE 3714.901703 3700.457598 5064.492704 3976.675331 3651.57397 3745.341154 3405.525457 4509.33564 3052.730905 4595.822472 0.808321411 0.805178534 1.101977445 0.865280449 0.794541998 0.814944697 0.741004571 0.981181425 0.664240389 1 12.16610735 -6.520393602 24.86694629 0.826576914 0.909905703 0.065422261 0.121241141 233.0776585 2332246.746 0.034551558 0.045410193 3.02E-07 6.520393602 0.083328789 LLEKDDSVIVEDSLSEPLGYCDGSGPEPHS(ph)PGGIR ddPTM_K562_Paclitaxel_30min_R1 1 LLEKDDSVIVEDSLSEPLGYCDGSGPEPHSPGGIR 35 1 F8VPL6;Q9H2S9-2;Q9H2S9 F8VPL6 IKZF4 Zinc finger protein Eos 1 LLEKDDSVIVEDSLSEPLGY(0.003)CDGS(0.068)GPEPHS(0.93)PGGIR 111.61 4.05E-16 19300000 1468 1382.3 3149.6 2256.4 1603.6 1362.5 1579.8 2132.6 1198.8 3118.9 TRUE FALSE 1488.556529 1533.224189 2354.444526 2111.684603 1822.037469 1604.120245 1879.558803 1951.422319 1313.950096 2483.266468 0.599434877 0.617422338 0.948123996 0.85036569 0.733726119 0.645971854 0.756889696 0.785828804 0.529121668 1 11.27802336 -11.22292412 3.668910276 1.000361974 0.727617166 0.330983421 0.119420801 62354124.42 97648407.4 268847.2103 0.031046355 5.99E-12 11.22292412 -0.272744808 LLETTDRPDGHQNNLR ddPTM_K562_Paclitaxel_30min_R1 1 LLETTDRPDGHQNNLR 16 1 Q14974;Q14974-2;J3KTM9 Q14974 KPNB1 Importin subunit beta-1 0 116.98 0.00057622 52694000 3064.6 2856.2 3164.5 2933.8 2521.8 2482.5 2689.6 3035.7 2588.5 3459.9 FALSE TRUE 3107.513855 3168.049575 2365.582837 2745.639199 2865.311854 2922.736519 3199.937559 2777.798337 2837.136991 2754.770481 1.12804819 1.150023059 0.858722298 0.996685284 1.040127254 1.060972789 1.161598609 1.008359265 1.029899591 1 11.42771641 -7.096992422 4.786343677 1.059188779 1.028123752 0.00578986 0.084845018 1.192137581 44.55577992 0.030399957 0.030731059 8.00E-08 7.096992422 -0.031065027 LLEVNGTKGLSVNDFY(ph)S(ph)GLES(ph)SGWLR ddPTM_K562_Paclitaxel_30min_R1 1 LLEVNGTKGLSVNDFYSGLESSGWLR 26 1 Q9Y217;Q9Y217-2 Q9Y217 MTMR6 Myotubularin-related protein 6 3 LLEVNGT(0.001)KGLS(0.003)VNDFY(0.962)S(0.966)GLES(0.534)S(0.534)GWLR 48.224 0.01783 16260000 0 0 168.41 54.113 134.57 159.87 0 0 0 0 TRUE FALSE 0 0 125.8928126 50.64243438 152.9007123 188.2206998 0 0 0 0 0 LLFIS(ph)EPIPHPSNELR ddPTM_K562_Paclitaxel_30min_R1 3 LLFISEPIPHPSNELR 16 0 Q9UBU7 Q9UBU7 DBF4 Protein DBF4 homolog A 1 LLFIS(1)EPIPHPSNELR;LLFIS(1)EPIPHPSNELR;LLFIS(1)EPIPHPSNELR 145.8 2.87E-08 34559600 10041.86 9075.07 9509.4 9230 8104.5 7792.34 9632.5 11395 13220.3 10087.3 TRUE FALSE 10182.47702 10065.91683 7108.634359 8638.029112 9208.47011 9174.202089 11460.21659 10426.92362 14490.16888 8031.502723 1.267817166 1.253304292 0.885093936 1.075518419 1.146543857 1.142277156 1.426908137 1.298253139 1.804166591 1 12.97145423 -7.738534034 6.455778379 1.407804085 1.120284009 0.259361135 0.208233534 0.206699886 30.01729257 0.079813955 0.059491 1.83E-08 7.738534034 -0.287520075 LLGELHTLRDQHLNNSSSS(ph)PQR ddPTM_K562_Paclitaxel_30min_R1 1 LLGELHTLRDQHLNNSSSSPQR 22 1 A0A5H1ZRS1;A0A4W8VX11;E9PGW9;E7EV93 A0A5H1ZRS1 PCM1 1 LLGELHTLRDQHLNNS(0.232)S(0.232)S(0.232)S(0.303)PQR 49.768 0.029644 28496000 2028.6 1466.5 2019.3 2039.7 1622.7 1616.1 1352.7 1776.3 3359.9 1930 TRUE FALSE 2057.006659 1626.617429 1509.502741 1908.882771 1843.739213 1902.692644 1609.367763 1625.392228 3682.633407 1536.664941 1.338617551 1.058537477 0.982323928 1.242224457 1.199831638 1.23819617 1.047312085 1.057740165 2.396510332 1 10.58558691 LLGESALEGINLNPVPS(ph)PNQKR ddPTM_K562_Paclitaxel_30min_R1 1 LLGESALEGINLNPVPSPNQKR 22 1 Q6PJP8 Q6PJP8 DCLRE1A DNA cross-link repair 1A protein 1 LLGESALEGINLNPVPS(1)PNQKR 117.53 6.63E-06 10576000 771.63 599.36 1450.2 1001.2 889.03 582.09 654.43 1106.7 1193.6 1334.6 TRUE FALSE 782.4352007 664.8001517 1084.079074 936.9875132 1010.130937 685.3154886 778.6046761 1012.678927 1308.250613 1062.607787 0.736334902 0.625630792 1.02020622 0.881781147 0.950615033 0.644937386 0.732730068 0.953012898 1.231169796 1 10.05339348 -8.525309155 5.096799542 1.113690173 0.805425814 0.489894266 0.12973001 0.153019655 12.15860046 0.089814852 0.035406253 2.98E-09 8.525309155 -0.30826436 LLGPAPEDDGGHNDHSQPQASQDQDS(ph)HTLSPQV ddPTM_K562_Paclitaxel_30min_R1 1 LLGPAPEDDGGHNDHSQPQASQDQDSHTLSPQV 33 0 Q92610 Q92610 ZNF592 Zinc finger protein 592 1 LLGPAPEDDGGHNDHS(0.007)QPQAS(0.086)QDQDS(0.302)HT(0.302)LS(0.302)PQV 40.837 0.026317 24042000 919.33 1084.7 1129.4 876.08 914.08 665.11 788.23 1011.5 877.73 854.29 TRUE FALSE 932.2034564 1203.131214 844.2690018 819.89215 1038.593172 783.0579199 937.7925277 925.5667614 962.0398883 680.1852291 1.370514114 1.768828788 1.241233955 1.205395405 1.526926971 1.151242171 1.378731098 1.360756926 1.414379271 1 9.409783867 -14.45214615 0.138070997 9.04E-21 1.514268856 0.321150492 0.166077334 149.7450742 1.467108608 43.28943168 1.112535175 3.53E-15 14.45214615 1.514268856 LLGPAPEDDGGHNDHSQPQASQDQDSHTLS(ph)PQV ddPTM_K562_Paclitaxel_30min_R1 2 LLGPAPEDDGGHNDHSQPQASQDQDSHTLSPQV 33 0 Q92610 Q92610 ZNF592 Zinc finger protein 592 1 LLGPAPEDDGGHNDHS(0.001)QPQAS(0.009)QDQDS(0.22)HT(0.22)LS(0.551)PQV;LLGPAPEDDGGHNDHSQPQAS(0.001)QDQDS(0.2)HT(0.2)LS(0.598)PQV 60.649 0.00044634 59769000 1704.05 1633.31 1903.02 1806.91 1662.72 1535.67 1290.26 1897.65 1337.76 2029.54 TRUE FALSE 1727.911957 1811.640309 1422.579065 1691.02288 1889.210614 1807.999513 1535.080099 1736.432788 1466.257825 1615.918634 1.069306289 1.121120997 0.880353153 1.04647774 1.16912484 1.118867915 0.949973636 1.074579345 0.90738345 1 10.65813884 -7.768170082 24.97410225 0.989199058 1.065128616 0.202138715 0.081844029 317.0545249 1176410.563 0.035471312 0.024533073 1.71E-08 7.768170082 0.075929558 LLGS(ph)KSPGPGPGPGAGAEPGATGGSSHFISSR ddPTM_K562_Paclitaxel_30min_R1 1 LLGSKSPGPGPGPGAGAEPGATGGSSHFISSR 32 1 Q9ULI0-2;Q9ULI0;C9JG15 Q9ULI0-2 ATAD2B ATPase family AAA domain-containing protein 2B 1 LLGS(0.5)KS(0.5)PGPGPGPGAGAEPGATGGSSHFISSR 129.82 7.10E-22 11119000 1363.9 800.64 1716.1 1318.3 874.49 849.91 978.3 1116.2 1335.6 1425.4 TRUE FALSE 1382.998808 888.0565828 1282.849331 1233.750138 993.6103432 1000.629605 1163.927318 1021.371843 1463.890348 1134.902698 1.218605622 0.78249579 1.130360632 1.087097723 0.875502671 0.881687573 1.025574545 0.899964239 1.289881812 1 10.1483529 -8.747429936 24.99933074 1.144941024 0.982886182 0.164007764 0.141709303 339.5118251 605853.0444 0.091541362 0.034217299 1.79E-09 8.747429936 -0.162054841 LLHIEELR ddPTM_K562_Paclitaxel_30min_R1 2 LLHIEELR 8 0 Q9Y224 Q9Y224 C14orf166 UPF0568 protein C14orf166 0 ; 153.04 7.71E-06 18782300 10024.7 10094 11268.1 11011 8635.9 9200.6 9550.6 11113.5 8184.4 11987.5 FALSE TRUE 10165.07673 11196.09706 8423.328793 10304.80374 9812.255787 10832.19723 11362.77649 10169.33881 8970.548189 9544.44092 1.065025895 1.173049019 0.882537685 1.079665517 1.028059775 1.134922131 1.190512528 1.065472445 0.939871519 1 13.22044498 -8.698018689 6.841891599 0.970538238 1.078712981 0.214928126 0.082285487 0.30816776 26.15949551 0.059423616 0.021666493 2.00E-09 8.698018689 0.108174743 LLHMDS(ph)DDEIPIR ddPTM_K562_Paclitaxel_30min_R1 6 LLHMDSDDEIPIR 13 0 Q1MSJ5-1;Q1MSJ5;Q1MSJ5-2 Q1MSJ5-1 CSPP1 Centrosome and spindle pole-associated protein 1 1 LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR;LLHMDS(1)DDEIPIR 220.25 5.18E-23 158009400 17702.8 16585.9 20608.5 17866.5 15946.2 14504.1 14550.3 17724.5 15721.6 18450.1 TRUE FALSE 17950.69382 18396.80465 15405.62929 16720.62266 18118.34241 17076.19849 17311.14347 16218.69309 17231.72993 14689.95949 1.221970273 1.252338692 1.048718296 1.13823477 1.233382735 1.162440134 1.17843371 1.104066563 1.173027736 1 13.8425428 -15 0.205483571 0.217298079 1.191501347 0.453070299 0.056848746 141.1728748 1.403192275 45.38034707 0.13412077 1.00E-15 15 0.974203268 LLHMDS(ph)DDEIPIRK ddPTM_K562_Paclitaxel_30min_R1 1 LLHMDSDDEIPIRK 14 1 Q1MSJ5-1;Q1MSJ5;Q1MSJ5-2 Q1MSJ5-1 CSPP1 Centrosome and spindle pole-associated protein 1 1 LLHMDS(1)DDEIPIRK 86.777 0.011919 9144100 914.43 1139.1 1950.4 1362.9 1015 820.26 674.74 1158.9 1306.9 1640.7 TRUE FALSE 927.2348413 1263.47079 1457.997398 1275.489694 1153.260184 965.721594 802.7683926 1060.444211 1432.433584 1306.324439 0.709804405 0.967195248 1.116106653 0.976395799 0.8828283 0.739266269 0.614524515 0.811777059 1.096537385 1 10.35129753 -6.965603924 5.165804359 0.824095017 0.954983604 0.05190436 0.155954278 0.422597122 28.53805774 0.052064779 0.058188958 1.08E-07 6.965603924 0.130888587 LLHPS(ph)PDLVSQEATLSEAR ddPTM_K562_Paclitaxel_30min_R1 3 LLHPSPDLVSQEATLSEAR 19 0 A0A087WU05;A0A087WY48;Q8IY22-3;Q8IY22-2;Q8IY22 A0A087WU05 CMIP C-Maf-inducing protein 1 LLHPS(1)PDLVSQEATLSEAR;LLHPS(1)PDLVSQEATLSEAR;LLHPS(1)PDLVSQEATLSEAR 168.3 1.46E-12 114687000 8110 7933.3 9157.1 8658.4 7718.8 7346.3 7717.9 8279.8 7922.4 9092 TRUE FALSE 8223.565021 8799.484523 6845.276851 8103.088978 8770.23124 8649.063158 9182.331235 7576.379309 8683.381918 7239.045409 1.136001304 1.215558686 0.945604906 1.119358772 1.211517644 1.194779514 1.268445039 1.046599224 1.1995203 1 12.82158375 -4.972188785 18.1808507 1.139471044 1.124930131 0 0.100172453 124214.7335 9306.764247 0.024126941 57631.50477 1.07E-05 4.972188785 -0.014540913 LLHQFS(ph)FSPER ddPTM_K562_Paclitaxel_30min_R1 1 LLHQFSFSPER 11 0 Q9UJX6-2;Q9UJX6 Q9UJX6-2 ANAPC2 Anaphase-promoting complex subunit 2 1 LLHQFS(0.636)FS(0.364)PER 93.494 0.010645 28540000 3608.3 3492.6 4281.2 3983.4 3427.3 2982.3 3829.4 4645.1 2389.7 4595.3 TRUE FALSE 3658.827333 3873.933879 3200.358111 3727.922553 3894.156285 3511.169031 4556.008659 4250.469761 2619.241362 3658.775338 1.000014211 1.058806164 0.874707468 1.018899006 1.064333261 0.959656909 1.245227771 1.161719255 0.715879255 1 11.83714512 -4.872311205 13.30217037 1.020031104 0.000442023 0 0.138538852 2052624.478 2078240.007 0.034350472 62233413.07 1.34E-05 4.872311205 -1.019589081 LLHQFSFS(ph)PER ddPTM_K562_Paclitaxel_30min_R1 1 LLHQFSFSPER 11 0 Q9UJX6-2;Q9UJX6 Q9UJX6-2 ANAPC2 Anaphase-promoting complex subunit 2 1 LLHQFS(0.168)FS(0.832)PER 105.19 0.0048607 27963000 2470.8 2552.1 2617.1 2293.8 2480.9 2202.2 2624.8 2948.1 1828.2 2919.8 TRUE FALSE 2505.398823 2830.746909 1956.380737 2146.685935 2818.840582 2592.72925 3122.842098 2697.640504 2003.806779 2324.743157 1.077709946 1.217660067 0.841547046 0.923407787 1.2125385 1.11527557 1.343306286 1.160403675 0.861947597 1 11.18285562 -4.906966381 15.76092254 1.08588529 0.839047675 0 0.15802293 54399006.51 102798158 0.04129886 465945166.2 1.24E-05 4.906966381 -0.246837615 LLHQFSFS(ph)PEREIR ddPTM_K562_Paclitaxel_30min_R1 1 LLHQFSFSPEREIR 14 1 Q9UJX6-2;Q9UJX6 Q9UJX6-2 ANAPC2 Anaphase-promoting complex subunit 2 1 LLHQFS(0.01)FS(0.99)PEREIR 76.158 0.027635 55113000 581.57 674 757.86 583.93 688.28 545.26 568.68 650.61 651.01 771.55 TRUE FALSE 589.7137743 747.5895993 566.5288699 546.4793434 782.0353887 641.9542052 676.5840613 595.3366195 713.5424193 614.3076865 0.959964831 1.216962795 0.922223313 0.889585716 1.27303533 1.045004351 1.101376519 0.969117972 1.161539136 1 9.262817625 -6.720513571 24.99996958 1.088287343 1.007528564 0.137912659 0.11439017 371.8199025 227128.5131 0.033822438 0.043664097 1.90E-07 6.720513571 -0.080758779 LLHVAVSDVNDDVRR ddPTM_K562_Paclitaxel_30min_R1 1 LLHVAVSDVNDDVRR 15 1 H7C378;A0A087WW66;Q99460-2;Q99460 H7C378 PSMD1 26S proteasome non-ATPase regulatory subunit 1 0 69.03 0.021972 11500000 183.21 317.86 226.77 234.75 260.72 362.83 263.81 160.85 175.33 392.21 FALSE TRUE 185.7755053 352.5650297 169.5191088 219.6941857 296.234478 427.1728061 313.8665703 147.1847885 192.1712299 312.2773867 0.594905405 1.129012361 0.542847853 0.703522557 0.948626095 1.36792744 1.005089013 0.471327079 0.615386314 1 8.286684291 -2.000042067 0.010637783 1.581342262 9.84E-06 0.011527718 0.277708075 150184.0592 123.7817258 7853.484443 10758.37076 0.009999031 2.000042067 -1.581332425 LLIDPNCSGHS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 LLIDPNCSGHSPR 13 0 Q8WYQ5-3;Q8WYQ5;C9JSD5;Q8WYQ5-2 Q8WYQ5-3 DGCR8 Microprocessor complex subunit DGCR8 1 LLIDPNCS(0.006)GHS(0.994)PR;LLIDPNCS(0.001)GHS(0.999)PR;LLIDPNCSGHS(1)PR;LLIDPNCSGHS(1)PR 176.56 0.0001107 397005000 15620.3 15685.8 18991.5 17853 15547.1 16531.9 14887.9 17130.5 10963.7 19008.8 TRUE FALSE 15839.03239 17398.42869 14196.86094 16707.98849 17664.87823 19463.60035 17712.8013 15675.1571 12016.81237 15134.79613 1.046530938 1.149564787 0.938027894 1.103945395 1.167169884 1.286016685 1.1703363 1.035703221 0.793985745 1 13.88558162 -8.553886226 5.991252128 0.898818474 1.123051409 0.463776236 0.096558848 0.165232742 17.46149862 0.069969276 0.02635155 2.79E-09 8.553886226 0.224232936 LLIEMEQR ddPTM_K562_Paclitaxel_30min_R1 1 LLIEMEQR 8 0 P12277;H0YJG0 P12277 CKB Creatine kinase B-type 0 113.89 0.017018 8766900 2371 2592.2 2646.3 2945.1 2558.7 2292.5 2944.4 3400.7 3100 3967 FALSE TRUE 2404.201315 2875.225162 1978.208836 2756.214468 2907.238259 2699.042687 3503.084529 3111.789308 3397.768851 3158.523222 0.761178926 0.910306798 0.62630815 0.872627577 0.920442262 0.854526782 1.109089369 0.985203872 1.075746041 1 11.62503446 -7.25814357 1.094821238 1.041764824 0.784371937 0.602488814 0.086459693 0.33797195 0.844823121 0.045318119 0.041048473 5.52E-08 7.25814357 -0.257392887 LLIVQDAS(ph)ER ddPTM_K562_Paclitaxel_30min_R1 2 LLIVQDASER 10 0 C9JKL2;O95772-2;O95772;C9JPX5 C9JKL2 STARD3NL MLN64 N-terminal domain homolog 1 LLIVQDAS(1)ER;LLIVQDAS(1)ER 109.72 0.0054153 12868500 2428.95 2601.8 3449.5 3124.3 3341.2 3256.2 3163.5 4291.8 4104.9 4041.8 TRUE FALSE 2462.962794 2885.873323 2578.631062 2923.921382 3796.328007 3833.641351 3763.75761 3927.184801 4499.193986 3218.078941 0.765351888 0.896768965 0.801295154 0.908592187 1.179687657 1.19128257 1.169566589 1.220350673 1.398099322 1 11.651984 -6.713500507 3.122435948 1.207554852 0.830234521 0.766578417 0.095415237 0.113450708 2.25642364 0.029185658 0.037414896 1.93E-07 6.713500507 -0.377320331 LLKEGEEPTVYS(ph)DEEEPKDESAR ddPTM_K562_Paclitaxel_30min_R1 4 LLKEGEEPTVYSDEEEPKDESAR 23 2 O00264-2;O00264 O00264-2 PGRMC1 Membrane-associated progesterone receptor component 1 1 LLKEGEEPT(0.002)VY(0.423)S(0.575)DEEEPKDESAR;LLKEGEEPT(0.001)VY(0.036)S(0.962)DEEEPKDESAR;LLKEGEEPT(0.02)VY(0.056)S(0.923)DEEEPKDESAR;LLKEGEEPT(0.004)VY(0.003)S(0.992)DEEEPKDESAR 148.17 5.85E-18 1031010000 8294.7 5718.12 19038.4 9403 6565.03 4649.13 4316.87 8844 7068.7 12853.9 TRUE FALSE 8410.851391 6342.443679 14231.92046 8799.933666 7459.298233 5473.587928 5135.973547 8092.646997 7747.680219 10234.26812 0.82183223 0.619726159 1.390614383 0.859849826 0.728855072 0.534829444 0.501840824 0.790740178 0.757033148 1 13.32112032 -6.718163489 4.1822337 0.68655294 0.941107861 0.164954451 0.222261698 0.34478458 12.79730599 0.06965231 0.088302907 1.91E-07 6.718163489 0.254554921 LLKPGEEPSEYT(ph)DEEDTKDHNKQD ddPTM_K562_Paclitaxel_30min_R1 1 LLKPGEEPSEYTDEEDTKDHNKQD 24 3 O15173;O15173-2;U3KPU8;U3KQM0 O15173 PGRMC2 Membrane-associated progesterone receptor component 2 1 LLKPGEEPS(0.124)EY(0.403)T(0.47)DEEDT(0.003)KDHNKQD 50.232 0.016551 11330000 1098.5 718.75 2733.5 1185 868.21 431.49 543.67 1148.5 1284 1885.6 TRUE FALSE 1113.882389 797.2255557 2043.394118 1108.999404 986.4749009 508.0086931 646.8285444 1050.927756 1407.333937 1501.313685 0.741938477 0.531018643 1.361070733 0.738686002 0.657074475 0.338376116 0.430841703 0.700005446 0.937401658 1 10.55200973 -6.516954729 24.32328737 0.638912746 0.877738192 0.089584707 0.270078503 390.3580487 1602766.583 0.081367796 0.108757709 3.04E-07 6.516954729 0.238825446 LLKREGT(ph)PPPPPPS(ph)RDLT(ph)EAYK ddPTM_K562_Paclitaxel_30min_R1 2 LLKREGTPPPPPPSRDLTEAYK 22 3 C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;Q9Y618;C9J7T7;A0A384DVL6;C9JQE8 C9JE98 NCOR2 Nuclear receptor corepressor 2 3 LLKREGT(1)PPPPPPS(0.581)RDLT(0.912)EAY(0.508)K;LLKREGT(1)PPPPPPS(0.97)RDLT(0.553)EAY(0.477)K 63.488 0.0054714 28073500 1088.78 1273.48 725.89 1395.81 1189 1152.46 1492.41 1169 1009.34 1354.55 TRUE FALSE 1104.026279 1412.522853 542.6300918 1306.288994 1350.96193 1356.8326 1775.587007 1069.686153 1106.291617 1078.491966 1.023675941 1.309720329 0.503137815 1.211218103 1.252639771 1.258083177 1.646360902 0.991835068 1.025776409 1 10.07479971 -6.468311723 24.99994668 1.222011613 0.961139822 0.164075724 0.256568741 548.4638054 251278.7288 0.07312261 0.108457683 3.40E-07 6.468311723 -0.260871791 LLKREGT(ph)PPPPPPSRDLT(ph)EAY(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 LLKREGTPPPPPPSRDLTEAYK 22 3 C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;Q9Y618;C9J7T7;A0A384DVL6;C9JQE8 C9JE98 NCOR2 Nuclear receptor corepressor 2 3 LLKREGT(1)PPPPPPS(0.385)RDLT(0.824)EAY(0.791)K 68.168 0.0033176 23512000 501.96 538.69 467.7 650.76 555.37 466.54 766.16 779.07 480.61 708.52 TRUE FALSE 508.9889887 597.5059959 349.6233506 609.0231663 631.0207965 549.2743185 911.5348604 712.8831407 526.7747379 564.1232351 0.902265599 1.059176362 0.619764138 1.079592416 1.118586786 0.973677885 1.615843496 1.263701079 0.933793727 1 9.13986655 -6.495469789 12.63235798 1.171311637 0.875138551 0.277179063 0.208222923 2.266816717 1042.174722 0.060695809 0.088539687 3.20E-07 6.495469789 -0.296173085 LLLAEDS(ph)EEEVDFLSER ddPTM_K562_Paclitaxel_30min_R1 12 LLLAEDSEEEVDFLSER 17 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 LLLAEDS(1)EEEVDFLSER;LLLAEDS(0.954)EEEVDFLS(0.046)ER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER;LLLAEDS(1)EEEVDFLSER 177.61 5.92E-10 431301350 9795.9 9794.36 11783.07 11412.46 9852.74 8587.37 9975.842 11611.58 9365.24 12440.26 TRUE FALSE 9933.072823 10863.74135 8808.288247 10680.5159 11194.85 10110.2195 11868.70594 10625.1038 10264.81315 9904.928183 1.002841478 1.096801627 0.889283404 1.078303214 1.130230304 1.020726179 1.198262695 1.072708818 1.03633393 1 13.2739308 -6.481324781 24.99556717 1.085228103 1.002597291 0.204387509 0.071055099 735.9246279 442673.6302 0.019353792 0.028702838 3.30E-07 6.481324781 -0.082630812 LLLAEDS(ph)EEEVDFLSERR ddPTM_K562_Paclitaxel_30min_R1 6 LLLAEDSEEEVDFLSERR 18 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 LLLAEDS(1)EEEVDFLSERR;LLLAEDS(1)EEEVDFLSERR;LLLAEDS(1)EEEVDFLSERR;LLLAEDS(0.683)EEEVDFLS(0.317)ERR;LLLAEDS(1)EEEVDFLSERR;LLLAEDS(1)EEEVDFLSERR 137.05 1.33E-09 124928500 3635.76 3676.81 4363.44 4217.07 3184.4 3190.15 3184.59 3841.51 4905.52 4171.39 TRUE FALSE 3686.671857 4078.25655 3261.835606 3946.606005 3618.169192 3755.878311 3788.849328 3515.149748 5376.717114 3321.258428 1.110022582 1.227925089 0.982108341 1.188286335 1.089397068 1.130860001 1.140787268 1.058378872 1.618879479 1 11.69751427 LLLDPS(ph)SPPTK ddPTM_K562_Paclitaxel_30min_R1 1 LLLDPSSPPTK 11 0 F5GX19;F5H3Y3;Q6IAA8;H0YFI1;F5H479 F5GX19 LAMTOR1 Ragulator complex protein LAMTOR1 1 LLLDPS(0.92)S(0.08)PPTK 176.87 0.0011645 9002900 3454 3157.9 5804.7 4138.7 2669.3 2638 2671.5 4083.3 3405.2 4478.8 TRUE FALSE 3502.366657 3502.690201 4339.231693 3873.262306 3032.903852 3105.812261 3178.403179 3736.398178 3732.284675 3566.018102 0.982150555 0.982241285 1.216828286 1.086158902 0.85050153 0.870946858 0.891303153 1.047778803 1.046625275 1 11.80009831 -5.588000182 24.97550844 0.999205641 0.982067317 0.00496819 0.104754628 698.6996169 267958.8621 0.030325626 0.080234073 2.58E-06 5.588000182 -0.017138324 LLLDPSS(ph)PPTK ddPTM_K562_Paclitaxel_30min_R1 1 LLLDPSSPPTK 11 0 F5GX19;F5H3Y3;Q6IAA8;H0YFI1;F5H479 F5GX19 LAMTOR1 Ragulator complex protein LAMTOR1 1 LLLDPS(0.173)S(0.754)PPT(0.073)K 121.68 0.0025552 8563700 1962 2349.1 3660.4 2506.6 2095.7 1909.4 1707 2135.3 2081 3358.7 TRUE FALSE 1989.474053 2605.582682 2736.286749 2345.837895 2381.16982 2248.005281 2030.894339 1953.892937 2280.889348 2674.195096 0.743952472 0.974342779 1.023218819 0.877212698 0.89042487 0.84062875 0.759441352 0.730647117 0.852925559 1 11.38488901 -7.18592996 2.2167528 0.812718497 0.91685796 0.078894946 0.096171748 0.543846161 5.246982783 0.036505761 0.035380006 6.52E-08 7.18592996 0.104139463 LLLERPS(ph)PIR ddPTM_K562_Paclitaxel_30min_R1 1 LLLERPSPIR 10 1 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 LLLERPS(1)PIR 89.356 0.012508 109290000 2681.7 2245.4 3084.7 2927 2892.7 2431 2306.4 3329 1859.5 3204.6 TRUE FALSE 2719.252074 2490.560365 2305.929334 2739.275321 3286.734714 2862.103717 2744.02736 3046.180671 2038.113283 2551.500761 1.065746135 0.976115862 0.903754124 1.07359377 1.28815745 1.121733437 1.075456218 1.193878018 0.798789996 1 11.31713036 -4.875728061 18.74881175 1.058613902 2.59271599 0 0.133120354 19448.08626 2486579.395 0.033087328 195549.02 1.33E-05 4.875728061 1.534102088 LLLFPSPPGEAPTTPS(ph)SSDEHSPHNGSLFTMEPPHVPR ddPTM_K562_Paclitaxel_30min_R1 1 LLLFPSPPGEAPTTPSSSDEHSPHNGSLFTMEPPHVPR 38 0 Q5SNT2;H0Y994;H0Y4R5 Q5SNT2 TMEM201 Transmembrane protein 201 1 LLLFPS(0.036)PPGEAPT(0.108)T(0.108)PS(0.412)S(0.23)S(0.046)DEHS(0.046)PHNGS(0.014)LFTMEPPHVPR 62.02 4.19E-05 9210200 1237.6 1048.9 1166.1 1140.6 856.45 831.17 1072.8 1544 1276.5 1917.1 TRUE FALSE 1254.930218 1163.422449 871.7036329 1067.447021 973.1129898 978.5663293 1276.3582 1412.827563 1399.113529 1526.393968 0.822153549 0.762203254 0.571086922 0.699326022 0.637524132 0.641096827 0.836191853 0.925598235 0.916613639 1 10.57591166 -7.983281406 3.038654212 0.938889271 0.685246972 0.739908021 0.069036779 0.142012073 2.680479701 0.036413846 0.021410218 1.04E-08 7.983281406 -0.253642299 LLNLQDS(ph)DSEECTSR ddPTM_K562_Paclitaxel_30min_R1 3 LLNLQDSDSEECTSR 15 0 Q52LR7 Q52LR7 EPC2 Enhancer of polycomb homolog 2 1 LLNLQDS(0.575)DS(0.425)EECTSR;LLNLQDS(1)DSEECTSR;LLNLQDS(0.991)DS(0.009)EECTSR 189.04 5.06E-07 112218000 4420.1 4452.5 6031.1 5198 3838 3859.1 4712.9 5872.3 3643.7 6017.7 TRUE FALSE 4481.995037 4938.639007 4508.474213 4864.623545 4360.800578 4543.457201 5607.148172 5373.411461 3993.693665 4791.289437 0.935446522 1.030753636 0.940973046 1.015305715 0.910151773 0.948274418 1.170279576 1.1214959 0.833532125 1 12.22619825 LLNLQDSDSEECTS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 LLNLQDSDSEECTSR 15 0 Q52LR7 Q52LR7 EPC2 Enhancer of polycomb homolog 2 1 LLNLQDSDS(0.001)EECT(0.001)S(0.997)R 167.92 2.00E-05 33115000 1729.7 1389.5 2118.9 1807.2 1597.7 1293.1 1523.1 1749 1595 2103.8 TRUE FALSE 1753.921137 1541.210309 1583.957489 1691.294281 1815.333789 1522.413129 1812.100274 1600.411533 1748.206877 1675.044405 1.047089338 0.920101165 0.945621193 1.009701161 1.083752636 0.908879266 1.08182223 0.955444243 1.04367793 1 10.70998363 -6.284226287 20.13696933 1.011655514 0.965853688 0.091734548 0.058404633 140.8339545 124455.4325 0.015584126 0.023163451 5.20E-07 6.284226287 -0.045801826 LLPDPGS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 LLPDPGSPR 9 0 A6ND36 A6ND36 FAM83G Protein FAM83G 1 LLPDPGS(1)PR;LLPDPGS(1)PR 99.53 0.011329 11589300 6546.5 6883.9 8452.7 7003.6 7234.1 7328.7 6401.8 7381.7 5313.1 8030.5 TRUE FALSE 6638.171198 7635.507482 6318.711343 6554.420443 8219.506894 8628.342045 7616.50813 6754.57851 5823.446995 6393.879692 1.038207085 1.194190046 0.988243703 1.025108504 1.2855273 1.349468939 1.191218555 1.056413138 0.910784574 1 12.64247588 -8.516573473 4.145429782 0.958450761 1.155197524 0.343578502 0.109695368 0.260277763 10.57954121 0.083665459 0.032270953 3.04E-09 8.516573473 0.196746763 LLPEGEET(ph)LESDDEKDEHTSK ddPTM_K562_Paclitaxel_30min_R1 1 LLPEGEETLESDDEKDEHTSK 21 1 Q8N6N3 Q8N6N3 C1orf52 UPF0690 protein C1orf52 1 LLPEGEET(0.955)LES(0.045)DDEKDEHTSK 90.872 0.0033249 63552000 1459 903.94 2950.6 1756.1 1009.4 814.69 670.79 1440.6 1313.6 2219.5 TRUE FALSE 1479.430501 1002.635226 2205.684537 1643.471606 1146.897369 959.1638327 798.0689007 1318.212038 1439.777149 1767.164682 0.837177495 0.567369435 1.248148834 0.930004783 0.649004239 0.54276992 0.451609807 0.745947478 0.814738527 1 10.78722078 -4.924135605 19.99987483 0.759435618 3.39778708 0.004484084 0.227998088 3224.794362 855174.9007 0.058874674 2250.257221 1.19E-05 4.924135605 2.638351462 LLPPAS(ph)P ddPTM_K562_Paclitaxel_30min_R1 4 LLPPASP 7 0 Q9Y4R8 Q9Y4R8 TELO2 Telomere length regulation protein TEL2 homolog 1 LLPPAS(1)P;LLPPAS(1)P;LLPPAS(1)P;LLPPAS(1)P 134.06 5.78E-05 31974000 5438 5428.2 6380.5 6039.7 5049 5375.8 4878.99 5741.8 4123.19 6161 TRUE FALSE 5514.148778 6020.869233 4769.663862 5652.340675 5736.75928 6329.12265 5804.752882 5253.998251 4519.240822 4905.384818 1.124101163 1.227399981 0.972332251 1.152272632 1.169482007 1.290239784 1.183343019 1.071067499 0.92128161 1 12.2601506 -8.538642442 3.842870494 0.963407295 1.159434496 0.503730849 0.078869039 0.191776165 6.25031416 0.060036308 0.021909719 2.89E-09 8.538642442 0.196027201 LLPPVGTGRS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 LLPPVGTGRSPR 12 1 Q9NWZ5;Q9NWZ5-3;Q9NWZ5-2;Q9NWZ5-4 Q9NWZ5 UCKL1 Uridine-cytidine kinase-like 1 1 LLPPVGT(0.001)GRS(0.999)PR 106.54 0.021026 142980000 2977.2 2273.1 3596.1 3046.2 2727 2706.2 2302.3 2970.1 2305.5 2704.1 TRUE FALSE 3018.889985 2521.284745 2688.220079 2850.830366 3098.463568 3186.106573 2739.149406 2717.771466 2526.953576 2153.002936 1.402176437 1.17105495 1.248590996 1.324118197 1.439135784 1.479843116 1.272246015 1.262316656 1.173687938 1 11.07213457 -8.970327697 1.383657017 1.002742019 1.333126235 0.597199255 0.086322398 0.333973765 1.443363444 0.091134169 0.027596743 1.07E-09 8.970327697 0.330384216 LLPS(ph)PVTCTPK ddPTM_K562_Paclitaxel_30min_R1 2 LLPSPVTCTPK 11 0 H0YCH4;Q9BU19-2;Q9BU19;Q9BU19-5 H0YCH4 ZNF692 Zinc finger protein 692 1 LLPS(0.964)PVT(0.035)CT(0.001)PK;LLPS(0.989)PVT(0.011)CTPK 128.68 0.0011865 56779000 7504.6 6375.7 12140.3 8181.2 6086.8 5555.5 5205.9 8436.8 6621.5 9304.5 TRUE FALSE 7609.687554 7071.820487 9075.331116 7656.49445 6915.92521 6540.689922 6193.692348 7720.041179 7257.524661 7408.237793 1.027192669 0.954588754 1.225032372 1.033510892 0.933545251 0.882894165 0.836054744 1.042088739 0.979656008 1 12.85491469 -6.679190397 4.811296965 0.939216273 1.067760195 0.314579555 0.083214424 0.256998952 10.56750576 0.026254635 0.033863142 2.09E-07 6.679190397 0.128543922 LLPYPTLASPAS(ph)D ddPTM_K562_Paclitaxel_30min_R1 2 LLPYPTLASPASD 13 0 P0C1Z6-2;P0C1Z6 P0C1Z6-2 TFPT TCF3 fusion partner 1 LLPYPTLASPAS(1)D;LLPYPTLASPAS(1)D 171.92 6.00E-05 41061000 5874.4 5476.9 6648 6573 5717.8 5055.8 5803.1 6288 4127.2 6816.5 TRUE FALSE 5956.659724 6074.886464 4969.630179 6151.4372 6496.661163 5952.375143 6904.207931 5753.795152 4523.636001 5427.293558 1.09753778 1.119321518 0.915673738 1.133426289 1.197035151 1.096748329 1.272127232 1.060159192 0.833497572 1 12.40601723 -8.588748639 6.621900483 0.921762894 1.117370089 0.424712918 0.09277146 0.211015225 16.55840445 0.065788762 0.024337963 2.58E-09 8.588748639 0.195607195 LLQDYFNGR ddPTM_K562_Paclitaxel_30min_R1 2 LLQDYFNGR 9 0 Q53FA3;P34931 Q53FA3 HSPA1L Heat shock 70 kDa protein 1-like 0 ; 166.68 1.62E-05 46978000 5529.5 5650.6 6736.7 6171.9 6019.1 5362.4 5727.1 6866.7 5308.3 7552 FALSE TRUE 5606.93006 6267.551617 5035.936767 5776.061958 6839.003324 6313.346348 6813.787328 6283.330974 5818.185933 6012.898255 0.932483774 1.042351184 0.837522365 0.960611957 1.137388832 1.049967267 1.133195181 1.044975436 0.967617559 1 12.55384483 -6.616887243 7.797928631 1.06106286 0.939988195 0.403838355 0.067027966 0.23292343 16.84819535 0.0198184 0.025608578 2.42E-07 6.616887243 -0.121074665 LLQISPS(ph)SGTTVTSVVGFSCDGMRPEAIR ddPTM_K562_Paclitaxel_30min_R1 1 LLQISPSSGTTVTSVVGFSCDGMRPEAIR 29 1 C9J840;A0A0D9SG62;G5E948;A0A0D9SEY1;O95819-2;O95819-6;O95819-3;E7EX83;H7C0P6;E7ENQ1;G3XAA2;H7C360;E7EN19;O95819-4;O95819;O95819-5 C9J840 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 LLQIS(0.005)PS(0.342)S(0.342)GT(0.072)T(0.072)VT(0.072)S(0.094)VVGFS(0.001)CDGMRPEAIR 70.449 0.00025001 14442000 805.47 715.03 818.84 617.96 593.71 674.09 643.84 1048.9 671.32 679.37 TRUE FALSE 816.7490651 793.0993935 612.1137147 578.3268115 674.5833536 793.6303968 766.0052789 959.789398 735.8032855 540.9140211 1.509942492 1.466220809 1.131628486 1.069165873 1.247117522 1.467202487 1.416131306 1.774384395 1.360296197 1 9.079255484 -7.264043838 24.07513685 1.452784937 1.274402259 0.045579632 0.21773155 302.2823028 2794221.482 0.076306678 0.070413433 5.44E-08 7.264043838 -0.178382678 LLQLVEDR ddPTM_K562_Paclitaxel_30min_R1 2 LLQLVEDR 8 0 J3KTA4;P17844-2;P17844 J3KTA4 DDX5 Probable ATP-dependent RNA helicase DDX5 0 ; 158.07 9.06E-07 31683000 4126.1 3614.1 4493.4 4341.7 3430.5 3845.7 3565.64 3935.9 3587.6 4249.4 FALSE TRUE 4183.87813 4008.69966 3358.985596 4063.242795 3897.792179 4527.680899 4242.201576 3601.520728 3932.20501 3383.369947 1.236600843 1.184824516 0.992792881 1.200945465 1.152044334 1.338216325 1.253839114 1.064477365 1.162215504 1 11.72424522 -9.169618059 1.244956915 1.003509071 1.184098875 0.265152399 0.090501423 1.034935267 3.255653777 0.091682296 0.028100247 6.77E-10 9.169618059 0.180589803 LLQLVEDRGS(ph)GR ddPTM_K562_Paclitaxel_30min_R1 2 LLQLVEDRGSGR 12 1 J3KTA4;P17844-2;P17844 J3KTA4 DDX5 Probable ATP-dependent RNA helicase DDX5 1 LLQLVEDRGS(1)GR;LLQLVEDRGS(1)GR 141.82 0.00034526 25899000 4777.1 4423.6 5679.1 4523 4339 4286.7 4382.4 4866.7 4410 5569.9 TRUE FALSE 4843.994139 4906.583608 4245.340967 4232.915024 4930.04526 5046.886057 5213.937522 4453.243458 4833.600204 4434.751323 1.092280894 1.106394305 0.95728952 0.954487572 1.111684715 1.138031355 1.175700088 1.004169825 1.089937147 1 12.11463749 LLQPGGGPDVGTGAPRPGCS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 5 LLQPGGGPDVGTGAPRPGCSPR 22 1 Q9NXH8 Q9NXH8 TOR4A Torsin-4A 1 LLQPGGGPDVGT(0.003)GAPRPGCS(0.997)PR;LLQPGGGPDVGTGAPRPGCS(1)PR;LLQPGGGPDVGTGAPRPGCS(1)PR;LLQPGGGPDVGT(0.002)GAPRPGCS(0.998)PR;LLQPGGGPDVGT(0.007)GAPRPGCS(0.993)PR 189.98 3.26E-23 741722000 9480.22 8913.45 10935.07 9889.03 8032.78 7674.5 8148.19 9136.93 8439.2 10359.6 TRUE FALSE 9612.972329 9886.650614 8174.376335 9254.791877 9126.980632 9035.46482 9694.266516 8360.690766 9249.822867 8248.307833 1.165447813 1.198627744 0.991036768 1.122023094 1.106527644 1.095432542 1.175303676 1.013624968 1.121420666 1 13.00988246 -15 0.092009466 0.663373814 1.19109988 0.256429452 0.060981097 308.828597 1.962771002 20.45456586 1.351808176 1.00E-15 15 0.527726066 LLQS(ph)PLCAGCSSDK ddPTM_K562_Paclitaxel_30min_R1 1 LLQSPLCAGCSSDK 14 0 Q9UJX6-2;Q9UJX6 Q9UJX6-2 ANAPC2 Anaphase-promoting complex subunit 2 1 LLQS(0.999)PLCAGCS(0.001)S(0.001)DK 99.481 0.0073725 4245000 897.03 686.78 1498.2 1129.7 730.54 823.18 741.2 1285.7 679.42 1192.6 TRUE FALSE 909.5911876 761.7649629 1119.96088 1057.246098 830.0519161 969.159415 881.8388307 1176.47176 744.6813267 949.5474654 0.957920716 0.802240005 1.179468032 1.11342101 0.874155265 1.020653996 0.928693786 1.238981518 0.784248659 1 9.891096308 -5.738960583 24.98828741 1.021241936 0.880080406 0.143262126 0.134118744 433.0940011 481436.4121 0.032581668 0.08606203 1.82E-06 5.738960583 -0.14116153 LLQS(ph)PLCAGCSSDKQQCWCR ddPTM_K562_Paclitaxel_30min_R1 2 LLQSPLCAGCSSDKQQCWCR 20 1 Q9UJX6-2;Q9UJX6 Q9UJX6-2 ANAPC2 Anaphase-promoting complex subunit 2 1 LLQS(0.986)PLCAGCS(0.013)SDKQQCWCR;LLQS(0.608)PLCAGCS(0.293)S(0.099)DKQQCWCR 95.209 0.00063174 78283000 3893.5 3319.7 5841.2 4141.3 3036.5 2614.82 2900.4 4485.3 3893.6 4728.4 TRUE FALSE 3948.021012 3682.156073 4366.516817 3875.695554 3450.122708 3078.521613 3450.735759 4104.245769 4267.597677 3764.749485 1.048680936 0.978061379 1.159842596 1.029469708 0.91642823 0.817722833 0.91659107 1.090177656 1.133567504 1 11.87833815 -6.534526651 22.57208353 0.972447728 1.060594026 0.137882289 0.093584629 143.9046569 278863.8609 0.030881817 0.039921222 2.92E-07 6.534526651 0.088146299 LLQTCFS(ph)SPADDSMDR ddPTM_K562_Paclitaxel_30min_R1 1 LLQTCFSSPADDSMDR 16 0 Q9NZL4-2;Q9NZL4;Q9NZL4-3 Q9NZL4-2 HSPBP1 Hsp70-binding protein 1 1 LLQTCFS(0.625)S(0.375)PADDSMDR 239.55 1.05E-50 44918000 1418.6 1514.7 1492.7 1470.2 1403 1188.8 1779 1790.9 1394.9 2016.7 TRUE FALSE 1438.464777 1680.080068 1115.849424 1375.907952 1594.112353 1399.616988 2116.555963 1638.751867 1528.886378 1605.695433 0.895851571 1.046325495 0.694932177 0.856892238 0.992786253 0.871657825 1.318155311 1.020586989 0.952164617 1 10.64898255 LLQTCFSS(ph)PADDSMDR ddPTM_K562_Paclitaxel_30min_R1 1 LLQTCFSSPADDSMDR 16 0 Q9NZL4-2;Q9NZL4;Q9NZL4-3 Q9NZL4-2 HSPBP1 Hsp70-binding protein 1 1 LLQTCFS(0.495)S(0.505)PADDSMDR 273.52 1.56E-112 56934000 2064.6 1557.4 1936.9 2071.3 1643.7 1691.2 1887.7 2529.3 1893.2 2406.4 TRUE FALSE 2093.51077 1727.442199 1447.90564 1938.456089 1867.599768 1991.110574 2245.881221 2314.420178 2075.050319 1915.974359 1.092661162 0.901599852 0.755701992 1.011733836 0.974751963 1.039215668 1.172187514 1.207959891 1.083026142 1 10.90386254 -7.296936816 1.739338295 1.13156938 0.926355158 0.396279078 0.096531418 0.336994331 2.014716327 0.042268591 0.037572138 5.05E-08 7.296936816 -0.205214222 LLQTCFSSPADDS(ph)MDR ddPTM_K562_Paclitaxel_30min_R1 1 LLQTCFSSPADDSMDR 16 0 Q9NZL4-2;Q9NZL4;Q9NZL4-3 Q9NZL4-2 HSPBP1 Hsp70-binding protein 1 1 LLQTCFSSPADDS(1)MDR 139.12 7.47E-09 15912000 945.22 935.46 1257.5 968.43 955.33 726.41 1065.1 1172.8 1229.2 1467.2 TRUE FALSE 958.4559963 1037.596686 940.0285724 906.3192343 1085.46212 855.2286142 1267.197165 1073.16332 1347.270152 1168.183835 0.820466752 0.888213529 0.804692331 0.775836138 0.929187759 0.732101052 1.084758346 0.918659622 1.153303198 1 10.19005161 -7.769287065 24.99955535 1.032401952 0.829519198 0.65496282 0.07602296 110.443223 351823.6054 0.029317287 0.020171101 1.70E-08 7.769287065 -0.202882754 LLQTTNNS(ph)PMNSKPQQIK ddPTM_K562_Paclitaxel_30min_R1 1 LLQTTNNSPMNSKPQQIK 18 1 O00178;B0QY59 O00178 GTPBP1 GTP-binding protein 1 1 LLQT(0.043)T(0.113)NNS(0.838)PMNS(0.006)KPQQIK 68.261 0.019929 26658000 2273.1 2200.4 4363.3 2827.9 2085.5 1617.5 1349.1 2653.2 2289.1 2830.2 TRUE FALSE 2304.930413 2440.647113 3261.73095 2646.531151 2369.580408 1904.340914 1605.084682 2427.794099 2508.978283 2253.403686 1.022866177 1.083093601 1.447468543 1.174459404 1.051556107 0.845095322 0.712293448 1.077389779 1.113417138 1 11.13789007 -6.921907792 3.521658106 0.939957357 1.193427034 0.349187142 0.148432224 0.27479187 6.803615993 0.052480209 0.059667988 1.20E-07 6.921907792 0.253469678 LLRLPGSGAVQAAS(ph)PER ddPTM_K562_Paclitaxel_30min_R1 1 LLRLPGSGAVQAASPER 17 1 Q86U90 Q86U90 YRDC "YrdC domain-containing protein, mitochondrial" 1 LLRLPGSGAVQAAS(1)PER 126.42 8.30E-05 33604000 978.48 843.72 1147.7 870.83 748.17 794.05 1189.8 1209.5 1262.1 1280.5 TRUE FALSE 992.1817389 935.8402029 857.9489404 814.9788615 850.0834206 934.8636185 1415.558339 1106.745426 1383.330344 1019.533397 0.973172376 0.917910297 0.841511365 0.799364556 0.833796542 0.916952423 1.388437439 1.08554112 1.356826905 1 9.99369332 -7.65051845 6.910281097 1.213537442 0.87074845 0.658731521 0.115601611 0.124360482 7.100801207 0.04200124 0.032360365 2.24E-08 7.65051845 -0.342788993 LLRQS(ph)PPLPGREEEPGLGDSGIQSTPGSGHAPR ddPTM_K562_Paclitaxel_30min_R1 4 LLRQSPPLPGREEEPGLGDSGIQSTPGSGHAPR 33 2 Q9C0B5-2;Q9C0B5 Q9C0B5-2 ZDHHC5 Palmitoyltransferase ZDHHC5 1 LLRQS(0.999)PPLPGREEEPGLGDSGIQSTPGSGHAPR;LLRQS(0.996)PPLPGREEEPGLGDS(0.003)GIQSTPGSGHAPR;LLRQS(1)PPLPGREEEPGLGDSGIQSTPGSGHAPR;LLRQS(0.98)PPLPGREEEPGLGDS(0.02)GIQSTPGSGHAPR 87.893 2.00E-08 921502000 2486.85 2587.59 2894.32 2903.57 2686.89 2735.14 2331.26 3342.53 2855.95 3443.47 TRUE FALSE 2521.673573 2870.111827 2163.61312 2717.348016 3052.889907 3220.178676 2773.604415 3058.561213 3130.276758 2741.688924 0.919751891 1.0468408 0.789153394 0.991121929 1.113507036 1.174523721 1.011640814 1.115575581 1.141733014 1 11.42084917 -6.607687163 4.562775882 1.097812458 0.925379995 0.510777492 0.076894493 0.16766607 6.333170082 0.02260209 0.029684482 2.47E-07 6.607687163 -0.172432463 LLS(ph)PLRDTPPPQSLMVK ddPTM_K562_Paclitaxel_30min_R1 2 LLSPLRDTPPPQSLMVK 17 1 F5GXF9;P51825-3;P51825-2;A0A669KBI3;P51825 F5GXF9 AFF1 AF4/FMR2 family member 1 1 LLS(0.999)PLRDT(0.001)PPPQSLMVK;LLS(0.999)PLRDT(0.001)PPPQSLMVK 91.926 0.0038197 19986300 2003.12 2027.71 3799.7 2825.5 2125.09 1731.76 1739.57 2929.3 2862.7 3435.2 TRUE FALSE 2031.16986 2249.102235 2840.418741 2644.285076 2414.563236 2038.863321 2069.644326 2680.437681 3137.675126 2735.104354 0.742629749 0.822309478 1.038504705 0.96679495 0.882804794 0.745442607 0.756696659 0.980012948 1.147186622 1 11.41738016 -8.504466307 6.610750197 1.071708345 0.858834958 0.468634981 0.096703242 0.150269985 29.58643189 0.064324205 0.027868294 3.13E-09 8.504466307 -0.212873388 LLS(ph)PLSSAR ddPTM_K562_Paclitaxel_30min_R1 4 LLSPLSSAR 9 0 A0A087WZ13;E9PAU2;Q8IY67-2 A0A087WZ13 RAVER1 Ribonucleoprotein PTB-binding 1 1 LLS(0.986)PLS(0.013)S(0.001)AR;LLS(1)PLSSAR;LLS(1)PLSSAR;LLS(0.999)PLS(0.001)SAR 133.75 0.00075211 752880000 14691.6 14203.3 18355.2 15893.1 12637.9 11999.3 13351.3 16020.2 14001.7 17357.4 TRUE FALSE 14897.32773 15754.06433 13721.20275 14873.7877 14359.39594 14127.20738 15884.63948 14659.18402 15346.62585 13819.95235 1.077957966 1.139950698 0.992854562 1.07625463 1.039033679 1.022232712 1.149399005 1.060726089 1.110468796 1 13.75446502 LLS(ph)PSNEK ddPTM_K562_Paclitaxel_30min_R1 1 LLSPSNEK 8 0 Q14694;Q14694-3;Q14694-2;H3BNA1;J3KT19 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 LLS(0.853)PS(0.147)NEK 89.679 0.01578 20343000 3600.2 3338.1 5576.9 4123.8 2936.7 2912.8 2650.2 4146.9 3299.4 4784.8 TRUE FALSE 3650.613908 3702.565047 4168.942621 3859.317925 3336.728259 3429.344182 3153.061615 3794.594961 3616.322112 3809.655134 0.958253117 0.971889821 1.094309714 1.013036033 0.875860975 0.900171817 0.827650143 0.996046841 0.949251831 1 11.89544469 -6.744318843 24.59469701 0.918540686 1.012761877 0.323382469 0.059412054 232.1573783 333506.4606 0.018255766 0.023504566 1.80E-07 6.744318843 0.094221191 LLS(ph)SNEDDANILSSPTDR ddPTM_K562_Paclitaxel_30min_R1 1 LLSSNEDDANILSSPTDR 18 0 H0YEG1;F5GY88;A0A0B4J1W0;O75448-2;O75448 H0YEG1 MED24 Mediator of RNA polymerase II transcription subunit 24 1 LLS(0.804)S(0.196)NEDDANILSSPTDR 180.31 4.16E-12 34808000 1218.8 1314.7 2013 1405.6 990.31 1430.5 1062.3 1695.8 1341.5 1510.7 TRUE FALSE 1235.86696 1458.243392 1504.793254 1315.451107 1125.206988 1684.17909 1263.865879 1551.731205 1470.357069 1202.818511 1.027475841 1.212355296 1.251055949 1.093640558 0.935475284 1.400193857 1.050753599 1.290079252 1.222426373 1 10.23220326 -7.254711554 24.96009644 1.201949505 1.117614495 0.092426664 0.134084922 1453.265995 5391585.332 0.043904617 0.042996793 5.56E-08 7.254711554 -0.08433501 LLS(ph)WSDNWR ddPTM_K562_Paclitaxel_30min_R1 1 LLSWSDNWR 9 0 J3KSY6;J3KSX6;Q8TCD5 J3KSY6 NT5C "5(3)-deoxyribonucleotidase, cytosolic type" 1 LLS(0.964)WS(0.036)DNWR 119.53 0.0029707 15702000 1994.7 2140.7 3023.5 2523.8 2047.9 2241.9 2094.2 2482.5 2238.8 3281.5 TRUE FALSE 2022.631954 2374.428865 2260.180031 2361.934764 2326.858651 2639.469487 2491.563518 2271.59613 2453.846743 2612.728499 0.774145479 0.908792807 0.86506502 0.904010794 0.890585705 1.01023489 0.953625116 0.869434436 0.939189336 1 11.3513415 -3.482836294 0.488075726 0.944346619 1.23E-10 0.549204201 0.044239391 19.98237389 0.913170097 0.026266708 15.71822934 0.000328976 3.482836294 -0.944346619 LLSGPSQESPQT(ph)LGK ddPTM_K562_Paclitaxel_30min_R1 1 LLSGPSQESPQTLGK 15 0 E7EVL6;C9JZE3;C9JYJ8;Q9BWE0;Q9BWE0-4 E7EVL6 REPIN1 Replication initiator 1 1 LLSGPS(0.247)QES(0.224)PQT(0.529)LGK 160.03 0.00011961 15723000 2414.7 2023.3 3495.6 2865.1 2346.6 2226.4 1795.6 2669.6 1912 3280.3 TRUE FALSE 2448.51325 2244.210736 2613.092547 2681.34531 2666.246648 2621.22078 2136.305726 2442.800817 2095.656143 2611.773059 0.937490813 0.859267128 1.000505208 1.026637939 1.020856938 1.003617359 0.817952279 0.935303628 0.802388299 1 11.35081383 -7.746528539 24.99925861 0.883519673 0.975108796 0.26713054 0.069405268 316.7896361 531124.4638 0.027156279 0.020946809 1.79E-08 7.746528539 0.091589122 LLSMPGAQGAAAAGSEPPPAT(ph)TSPEGQPK ddPTM_K562_Paclitaxel_30min_R1 1 LLSMPGAQGAAAAGSEPPPATTSPEGQPK 29 0 A0A0G2JIS2;A2ABF8;A0A0G2JIR1;Q96KQ7-2;A2ABF9;A0A0G2JK64;Q96KQ7-3;Q96KQ7 A0A0G2JIS2 EHMT2 Histone-lysine N-methyltransferase EHMT2 1 LLSMPGAQGAAAAGS(0.01)EPPPAT(0.509)T(0.392)S(0.088)PEGQPK 67.496 0.00060532 8994300 932.37 795.59 1381.2 1140.5 899.75 674.27 536.85 838.5 1012.4 1134.2 TRUE FALSE 945.4260566 882.4552067 1032.498978 1067.353435 1022.311183 793.8423173 638.714485 767.2641912 1109.645544 903.0494174 1.046926157 0.977194813 1.14334715 1.18194355 1.132065603 0.879068523 0.707286304 0.849636993 1.228776103 1 9.818661128 -7.262297669 24.98469471 0.909451687 1.097050966 0.258927242 0.135274894 103.2084602 3004348.943 0.048764679 0.045505787 5.47E-08 7.262297669 0.187599279 LLSNS(ph)QTLGNDMLMNTPR ddPTM_K562_Paclitaxel_30min_R1 2 LLSNSQTLGNDMLMNTPR 18 0 H3BU04;Q9BVW5 H3BU04 TIPIN TIMELESS-interacting protein 1 LLS(0.167)NS(0.71)QT(0.123)LGNDMLMNTPR;LLS(0.017)NS(0.61)QT(0.373)LGNDMLMNTPR 104.16 0.00099634 40153000 1591.91 1609.92 2083.87 2269.2 1719.18 1616.73 1526.3 2031.43 1668.72 2651.18 TRUE FALSE 1614.201651 1785.69651 1557.771246 2123.663669 1953.361422 1903.434365 1815.907457 1858.847342 1829.008012 2110.868061 0.764709875 0.845953635 0.737976605 1.006061775 0.925383002 0.90173062 0.860265732 0.880608019 0.866471972 1 11.04362069 -6.248813423 24.99953391 0.912064616 0.789187398 0.572866045 0.053895928 628.4868042 1244408.77 0.014753636 0.025341927 5.64E-07 6.248813423 -0.122877219 LLSNSQT(ph)LGNDMLMNTPR ddPTM_K562_Paclitaxel_30min_R1 1 LLSNSQTLGNDMLMNTPR 18 0 H3BU04;Q9BVW5 H3BU04 TIPIN TIMELESS-interacting protein 1 LLSNS(0.098)QT(0.902)LGNDMLMNTPR 252.58 6.81E-67 27915000 1426.6 1752.5 1745.7 1515 1330.7 1347.4 1751.4 1626.9 1644.1 1587.7 TRUE FALSE 1446.576801 1943.843877 1304.976444 1417.834681 1511.963869 1586.342472 2083.719007 1488.68469 1802.023151 1264.125868 1.14432972 1.537698045 1.032315276 1.121592965 1.196054844 1.254892817 1.648347731 1.177639606 1.425509276 1 10.3039244 -7.535826051 24.98214131 1.345383523 1.211926268 0.049817401 0.199249569 595.4409418 1148906.723 0.073815931 0.057211695 2.91E-08 7.535826051 -0.133457256 LLSNSQTLGNDMLMNT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 LLSNSQTLGNDMLMNTPR 18 0 H3BU04;Q9BVW5 H3BU04 TIPIN TIMELESS-interacting protein 1 LLSNSQTLGNDMLMNT(1)PR 145.17 2.47E-21 0 426.91 506.71 538.25 447.14 431.47 403.25 512.7 582.99 499.54 757.17 TRUE FALSE 432.8880571 562.0343114 402.3621305 418.4624417 490.2435188 474.7607256 609.9821485 533.4613606 547.523049 602.8583384 0.718059334 0.932282554 0.667424011 0.694130636 0.813198537 0.78751623 1.011816723 0.884886758 0.908211787 1 9.235675223 -7.677516075 6.81697228 0.941148402 0.768832136 0.570364153 0.077466209 0.17572998 11.77422666 0.030242788 0.023256497 2.10E-08 7.677516075 -0.172316267 LLSRPQDALEGVVLS(ph)PSLEAR ddPTM_K562_Paclitaxel_30min_R1 1 LLSRPQDALEGVVLSPSLEAR 21 1 Q9NVI7-3;Q9NVI7-2;Q9NVI7 Q9NVI7-3 ATAD3A ATPase family AAA domain-containing protein 3A 1 LLSRPQDALEGVVLS(0.886)PS(0.114)LEAR 115.58 1.84E-05 14370000 1080.6 1242.4 1239.3 1128.3 848.96 1115.1 1216.3 1166.3 1275.6 1764.5 TRUE FALSE 1095.731734 1378.049434 926.4233875 1055.935888 964.602725 1312.847328 1447.086575 1067.215535 1398.12708 1404.893931 0.779939118 0.980892153 0.659425859 0.751612534 0.686601816 0.934481457 1.030032619 0.759641359 0.995183372 1 10.4562455 -7.285346837 23.15239547 0.934230713 0.775963621 0.39667621 0.105769281 364.7104722 353189.794 0.03778412 0.033348174 5.18E-08 7.285346837 -0.158267092 LLSRPQDALEGVVLSPS(ph)LEAR ddPTM_K562_Paclitaxel_30min_R1 1 LLSRPQDALEGVVLSPSLEAR 21 1 Q9NVI7-3;Q9NVI7-2;Q9NVI7 Q9NVI7-3 ATAD3A ATPase family AAA domain-containing protein 3A 1 LLSRPQDALEGVVLS(0.384)PS(0.616)LEAR 99.097 0.00040423 16185000 844.07 1099.5 1224.4 1158.1 889.69 942.87 1208.8 1224.8 970.25 1365.8 TRUE FALSE 855.8895842 1219.547128 915.2850768 1083.824649 1010.880841 1110.074756 1438.16349 1120.745595 1063.446848 1087.44921 0.787061663 1.121475023 0.841680759 0.996666915 0.929589015 1.020806071 1.322510951 1.030618795 0.977927831 1 10.08673231 -7.523575146 24.99999006 1.097650599 0.94698188 0.240486536 0.121986227 34.28889219 1230821.538 0.045062118 0.035220148 3.00E-08 7.523575146 -0.150668718 LLSRPQDVLEGVVLS(ph)PSLEAR ddPTM_K562_Paclitaxel_30min_R1 1 LLSRPQDVLEGVVLSPSLEAR 21 1 J3QSF3;A0A5K1VW56;Q5T2N8;Q5T9A4-3;Q5T9A4 J3QSF3 ATAD3C;ATAD3B ATPase family AAA domain-containing protein 3C;ATPase family AAA domain-containing protein 3B 1 LLSRPQDVLEGVVLS(0.886)PS(0.114)LEAR 75.297 0.0025696 7526900 1057.3 863.79 852.07 973.93 886.88 891.09 986.75 1153.8 1039 1270.1 TRUE FALSE 1072.105462 958.1015134 636.9543902 911.4664889 1007.688071 1049.1123 1173.980661 1055.777488 1138.800592 1011.252923 1.06017539 0.947440044 0.629866551 0.90132396 0.996474817 1.037438089 1.160916952 1.044029109 1.126128357 1 9.981928157 -6.969489918 2.349235349 1.0820418 0.870748335 0.400706167 0.108752033 0.303240088 3.382477952 0.04025759 0.044834226 1.07E-07 6.969489918 -0.211293465 LLSSNEDDANILSS(ph)PTDR ddPTM_K562_Paclitaxel_30min_R1 2 LLSSNEDDANILSSPTDR 18 0 H0YEG1;F5GY88;A0A0B4J1W0;O75448-2;O75448 H0YEG1 MED24 Mediator of RNA polymerase II transcription subunit 24 1 LLSSNEDDANILS(0.031)S(0.967)PT(0.002)DR;LLSSNEDDANILS(0.106)S(0.893)PT(0.001)DR 217.67 2.47E-25 324770000 6651.7 5703.9 7260.5 7045.2 6372.1 5956.6 6126.7 7652.9 6802.5 7588.9 TRUE FALSE 6744.844322 6326.671091 5427.496978 6593.352405 7240.087901 7012.919375 7289.209341 7002.738377 7455.910519 6042.278014 1.116275071 1.047067195 0.898253434 1.091203084 1.198238129 1.160641625 1.206367751 1.158956665 1.233956879 1 12.56087685 -6.533158747 6.676573623 1.168296854 1.018379098 0.392011039 0.077456205 0.130724626 27.69940935 0.022019548 0.02953189 2.93E-07 6.533158747 -0.149917756 LLSSSLTADCSLRS(ph)PSGR ddPTM_K562_Paclitaxel_30min_R1 3 LLSSSLTADCSLRSPSGR 18 1 Q147X3;Q147X3-2 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 LLSSSLTADCSLRS(0.998)PS(0.002)GR;LLSSSLTADCS(0.023)LRS(0.882)PS(0.094)GR;LLSSSLTADCSLRS(0.994)PS(0.005)GR 183.71 8.21E-12 130987000 3641.66 3918.51 5013.6 3903.42 3271.28 3198.22 3591.98 4388.21 2862.91 4630.2 TRUE FALSE 3692.654475 4346.346173 3747.854673 3653.072112 3716.883719 3765.379412 4273.539454 4015.40417 3137.905297 3686.562698 1.001652427 1.178969823 1.016625778 0.990915498 1.00822474 1.021379458 1.159220608 1.089200021 0.851173723 1 11.84806058 -8.749448339 24.9999994 0.925586841 1.059130042 0.35967626 0.070808563 211.7378911 441456.2195 0.049488198 0.018384277 1.78E-09 8.749448339 0.133543201 LLSWS(ph)DNWR ddPTM_K562_Paclitaxel_30min_R1 1 LLSWSDNWR 9 0 J3KSY6;J3KSX6;Q8TCD5 J3KSY6 NT5C "5(3)-deoxyribonucleotidase, cytosolic type" 1 LLS(0.471)WS(0.529)DNWR 113.44 0.0046759 12717000 2805.4 2796.7 3766.7 3248.2 2547 2372.3 2605.6 3378.7 2818.5 3490.5 TRUE FALSE 2844.684255 3102.053164 2815.749999 3039.87499 2893.944521 2792.994096 3099.998998 3091.658346 3089.229518 2779.134184 1.023586508 1.116194094 1.01317526 1.093820877 1.041311549 1.004987133 1.115454956 1.112453786 1.111579835 1 11.44041978 -7.786086837 24.99836003 1.094243289 1.051987608 0.116686564 0.045246501 416.3360301 422259.0255 0.018016635 0.012152496 1.64E-08 7.786086837 -0.042255681 LLTS(ph)QELQMQR ddPTM_K562_Paclitaxel_30min_R1 1 LLTSQELQMQR 11 0 Q7Z333-3;Q7Z333;Q7Z333-4 Q7Z333-3 SETX Probable helicase senataxin 1 LLT(0.039)S(0.961)QELQMQR 84.687 0.027443 7527200 1507.1 1313.8 1587.5 1673.6 1299.4 1180.4 1193.7 1553.6 1395.8 1865.1 TRUE FALSE 1528.20405 1457.245127 1186.715991 1566.262787 1476.400279 1389.727366 1420.198343 1421.611983 1529.872827 1484.991596 1.02909946 0.981315403 0.79913987 1.054728384 0.994214568 0.93584864 0.956367933 0.957319884 1.030223222 1 10.53623905 -8.754203717 24.77516023 1.015111613 0.961523902 0.091019864 0.064994376 329.497859 1128244.829 0.046201824 0.016648302 1.76E-09 8.754203717 -0.053587711 LLVTDMS(ph)DAEQYR ddPTM_K562_Paclitaxel_30min_R1 1 LLVTDMSDAEQYR 13 0 O14929-2;O14929 O14929-2 HAT1 Histone acetyltransferase type B catalytic subunit 1 LLVT(0.013)DMS(0.987)DAEQYR 98.531 0.0092448 2877700 425.92 349.7 513.98 524.08 503.32 491.74 290.74 390.13 507.71 392.7 TRUE FALSE 431.8841941 387.8814286 384.2193922 490.4678545 571.8807053 578.9431846 345.9063972 356.9860214 556.477814 312.6675244 1.381288942 1.240555537 1.228843299 1.568656212 1.82903775 1.851625575 1.106307404 1.141743205 1.779774906 1 8.28848557 -11.27028467 4.064824731 0.999543085 1.451478455 0.203710537 0.271705422 37871919.93 52503477.82 129935.8534 0.070970103 5.37E-12 11.27028467 0.45193537 LLYNS(ph)PEYEASFPR ddPTM_K562_Paclitaxel_30min_R1 2 LLYNSPEYEASFPR 14 0 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 1 LLY(0.424)NS(0.576)PEYEASFPR;LLYNS(1)PEYEASFPR 161.94 0.00011669 19546400 2066.06 2022.56 2115.1 2185.2 1821.62 1773 1974.72 2128.9 1689.39 2564.14 TRUE FALSE 2094.991214 2243.389941 1581.116846 2045.051053 2069.755484 2087.416656 2349.412811 1948.036657 1851.663458 2041.566861 1.02616831 1.098856953 0.774462437 1.001706626 1.013807348 1.02245814 1.150789061 0.954187048 0.906981541 1 10.9954611 LMELHGEGSS(ph)SGK ddPTM_K562_Paclitaxel_30min_R1 1 LMELHGEGSSSGK 13 0 D6R9B6;H0Y9Y4;D6RAT0;P61247;D6RG13 D6R9B6 RPS3A 40S ribosomal protein S3a 1 LMELHGEGS(0.311)S(0.507)S(0.183)GK 79.317 0.024908 10423000 4311.2 3338.7 6123 4170.4 3357.1 3310.5 3098.3 4927 3101.7 6167.1 TRUE FALSE 4371.570101 3703.230557 4577.172922 3902.92921 3814.393856 3897.570693 3686.186251 4508.420597 3399.632144 4910.241635 0.890296329 0.754184994 0.93216857 0.794854816 0.776824063 0.793763522 0.750713819 0.918166749 0.692355366 1 12.26157831 -11.39812686 3.455246063 1.00155378 0.812666506 0.367071399 0.074249368 48472701.6 58003130.9 725022.0405 0.017712459 4.00E-12 11.39812686 -0.188887274 LMGS(ph)PVA ddPTM_K562_Paclitaxel_30min_R1 1 LMGSPVA 7 0 C9J713;Q96IZ7-2;Q96IZ7 C9J713 RSRC1 Serine/Arginine-related protein 53 1 LMGS(1)PVA 89.296 0.0083514 24153000 6000.7 5764.5 7578.5 6336.6 5091.6 5652 5799.5 6352.7 6335.7 7157.3 TRUE FALSE 6084.728314 6393.887604 5665.213945 5930.198838 5785.162121 6654.302842 6899.92485 5812.998483 6944.272294 5698.638331 1.06775127 1.122002702 0.994134671 1.040634357 1.015183239 1.167700502 1.210802379 1.020067978 1.218584492 1 12.47640152 -7.259699475 24.99927694 1.130146026 1.04866058 0.204019318 0.073955436 237.3447942 3410233.384 0.024203065 0.023042634 5.50E-08 7.259699475 -0.081485446 LMLASMFHS(ph)DQVCGSSRS ddPTM_K562_Paclitaxel_30min_R1 1 LMLASMFHSDQVCGSSRS 18 1 G5EA23 G5EA23 TRAPPC4 1 LMLAS(0.016)MFHS(0.976)DQVCGS(0.005)S(0.004)RS 52.372 0.027075 10594000 794.13 1087.4 1265.9 885.58 828.81 939.98 702.88 1084.6 793.44 1080 TRUE FALSE 805.2502701 1206.126009 946.3078885 828.7828625 941.7079539 1106.672255 836.2478107 992.4564601 869.6534572 859.8954072 0.936451414 1.402642693 1.100491851 0.963818222 1.095142439 1.286984726 0.97249945 1.154159508 1.01134795 1 9.748017379 -8.80017771 1.051361395 0.996238769 1.125137226 0.073697061 0.138918561 1.349342778 3.188877577 0.129471382 0.043778111 1.58E-09 8.80017771 0.128898457 LMPVSLSVQS(ph)PAALTAEK ddPTM_K562_Paclitaxel_30min_R1 2 LMPVSLSVQSPAALTAEK 18 0 P54198 P54198 HIRA Protein HIRA 1 LMPVSLSVQS(0.998)PAALT(0.001)AEK;LMPVSLS(0.001)VQS(0.999)PAALTAEK 186.11 1.84E-12 9708600 2114.74 1944.04 3417.4 2458.7 1972.97 1832.71 1567.33 2346.92 1650.18 3566.8 TRUE FALSE 2144.352885 2156.296862 2554.635104 2301.009987 2241.721917 2157.715386 1864.722685 2147.534497 1808.687162 2839.884202 0.75508462 0.759290418 0.899556081 0.810247821 0.789370889 0.759789918 0.656619268 0.756204952 0.636887645 1 11.47161639 -7.241022846 3.125869492 0.738871045 0.807917947 0.018476109 0.099748974 0.653206818 13.08154049 0.034495221 0.032574352 5.74E-08 7.241022846 0.069046902 LMQLVDHR ddPTM_K562_Paclitaxel_30min_R1 1 LMQLVDHR 8 0 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 108.74 0.021086 7945500 3888.8 4008.1 5215.9 4434.4 3834.4 4062.2 4323.4 5253.3 4594.2 5392.7 FALSE TRUE 3943.255198 4445.717913 3899.081536 4149.997432 4356.710197 4782.574134 5143.74258 4806.999375 5035.493437 4293.66478 0.918389162 1.035413368 0.908101059 0.966539691 1.014683358 1.113867612 1.197984203 1.119556281 1.17277284 1 12.06799384 -7.149932843 2.537744198 1.135400863 0.960118139 0.636008182 0.058492036 0.171426163 2.156312008 0.020248248 0.02013337 7.08E-08 7.149932843 -0.175282723 LMRSS(ph)TDSLPGPISR ddPTM_K562_Paclitaxel_30min_R1 3 LMRSSTDSLPGPISR 15 1 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 LMRS(0.134)S(0.431)T(0.003)DS(0.431)LPGPISR;LMRS(0.217)S(0.668)T(0.115)DSLPGPISR;LMRS(0.172)S(0.636)T(0.172)DS(0.019)LPGPISR 121.95 0.00047217 122561000 3896.04 3444 4291.43 3988.31 3297.56 3654.24 3386.47 3988.7 3806.49 4070.32 TRUE FALSE 3950.59658 3820.027567 3208.005421 3732.517648 3746.7435 4302.268156 4029.035004 3649.835038 4172.120372 3240.78655 1.219023999 1.178734702 0.989884823 1.151732023 1.156121652 1.327538266 1.243227513 1.126218892 1.287378946 1 11.66212829 -5.296469929 5.782151245 1.167847274 1.219698456 0.024179299 0.10369086 0.780016515 79.11381644 0.026454075 0.12376627 5.05E-06 5.296469929 0.051851181 LMTGDTY(ph)TAHAGAK ddPTM_K562_Paclitaxel_30min_R1 4 LMTGDTYTAHAGAK 14 0 P00519-2;P00519;P42684-8;P42684-4;P42684-7;P42684-10;P42684-5;P42684-2;P42684-6;P42684-3;P42684 P00519-2;P42684-4 ABL1;ABL2 Tyrosine-protein kinase ABL1;Abelson tyrosine-protein kinase 2 1 LMT(0.043)GDT(0.21)Y(0.745)T(0.002)AHAGAK;LMT(0.175)GDT(0.127)Y(0.692)T(0.006)AHAGAK;LMT(0.019)GDT(0.002)Y(0.978)T(0.001)AHAGAK;LMTGDT(0.01)Y(0.989)TAHAGAK 162.31 0.00028404 237051000 14557.7 11502.44 22281.7 14702.7 12302.8 11818.5 10674.16 15332 11699.8 18478.3 TRUE FALSE 14761.55271 12758.3153 16656.40926 13759.73463 13978.64965 13914.34504 12699.52614 14029.4509 12823.61807 14712.41232 1.003340064 0.86718038 1.13213312 0.93524667 0.950126284 0.945755511 0.863184491 0.953579236 0.871618997 1 13.8447462 -6.487688212 24.94562363 0.927303833 0.995210065 0.168798804 0.070181315 1051.584202 745439.3312 0.019091417 0.028301376 3.25E-07 6.487688212 0.067906232 LMTGDTYT(ph)AHAGAK ddPTM_K562_Paclitaxel_30min_R1 1 LMTGDTYTAHAGAK 14 0 P00519-2;P00519;P42684-8;P42684-4;P42684-7;P42684-10;P42684-5;P42684-2;P42684-6;P42684-3;P42684 P00519-2;P42684-4 ABL1;ABL2 Tyrosine-protein kinase ABL1;Abelson tyrosine-protein kinase 2 1 LMTGDT(0.045)Y(0.186)T(0.769)AHAGAK 90.653 0.030777 3733000 736.46 699.92 1486.8 946.86 506.28 710.8 699.98 848.35 859.95 1189.2 TRUE FALSE 746.7727122 776.3396326 1111.438951 886.1326376 575.2439074 836.8503999 832.7975509 776.2773723 942.5520399 946.8403872 0.788699682 0.819926614 1.173839822 0.935883861 0.607540527 0.883834711 0.879554318 0.819860858 0.995470887 1 9.886977435 -8.776074027 24.03792899 0.997735734 0.867600041 0.139107076 0.133142863 380.7769332 625409.9537 0.133341268 0.035110541 1.67E-09 8.776074027 -0.130135693 LNECIS(ph)PVANEMNHLPAHSHDLQR ddPTM_K562_Paclitaxel_30min_R1 2 LNECISPVANEMNHLPAHSHDLQR 24 0 P23497-2;P23497-3;P23497;P23497-4;P23497-5 P23497-2 SP100 Nuclear autoantigen Sp-100 1 LNECIS(1)PVANEMNHLPAHSHDLQR;LNECIS(1)PVANEMNHLPAHSHDLQR 93.278 4.68E-05 42907000 2823.3 2679.2 3322.1 3232.6 2677.9 2398.44 3065.2 3155.2 2831.3 3476.1 TRUE FALSE 2862.834911 2971.724116 2483.394768 3025.275505 3042.675317 2823.769658 3646.805699 2887.146066 3103.259016 2767.668912 1.034384893 1.073728185 0.897287518 1.093077099 1.09936391 1.020270035 1.317645215 1.043168875 1.121253703 1 11.43445565 -6.491812055 24.43254811 1.108119583 1.006691188 0.186969861 0.092198808 816.4427506 642094.8779 0.025484321 0.037742992 3.22E-07 6.491812055 -0.101428395 LNELEAMT(ph)RVR ddPTM_K562_Paclitaxel_30min_R1 1 LNELEAMTRVR 11 1 F5H322;F5GZR8;P29375-2;P29375 F5H322 KDM5A Lysine-specific demethylase 5A 1 LNELEAMT(1)RVR 73.499 0.017314 0 1102.7 1031.8 1227.3 1200 1003.1 886.66 1178.9 1313.8 977.29 1510.5 TRUE FALSE 1118.141202 1144.455413 917.4529359 1123.037371 1139.739203 1043.896702 1402.590121 1202.18449 1071.163071 1202.659271 0.929724012 0.951604034 0.762853585 0.933795131 0.947682548 0.8679904 1.166240642 0.999605224 0.890662133 1 10.23201225 LNGPGENVS(ph)EDEAQSSNQR ddPTM_K562_Paclitaxel_30min_R1 4 LNGPGENVSEDEAQSSNQR 19 0 H0Y9K3;D6R9W6;D6RJB0;A0A3B3ISF0;Q659C4-9;Q659C4-2;Q659C4;G3V0E9;A0A3B3IT29;A0A3B3ISF8;Q659C4-3 H0Y9K3 LARP1B La-related protein 1B 1 LNGPGENVS(0.724)EDEAQS(0.275)S(0.001)NQR;LNGPGENVS(1)EDEAQSSNQR;LNGPGENVS(0.87)EDEAQS(0.128)S(0.002)NQR;LNGPGENVS(1)EDEAQSSNQR 321.17 8.71E-265 206240000 5158.9 5090.2 7681.3 6331.8 4451.64 4461.14 4666.51 5830.1 5373 6306.1 TRUE FALSE 5231.140517 5645.96525 5742.060814 5925.706688 5058.028735 5252.260541 5551.955912 5334.796615 5889.100657 5020.913359 1.041870302 1.124489679 1.143628739 1.180204928 1.007392156 1.046076713 1.105766126 1.062515171 1.172914216 1 12.29373411 -6.757249897 24.99977688 1.069917561 1.124192797 0.194284122 0.056219849 196.8234693 1174491.034 0.016991945 0.021163268 1.75E-07 6.757249897 0.054275236 LNHVAAGLVS(ph)PSLK ddPTM_K562_Paclitaxel_30min_R1 1 LNHVAAGLVSPSLK 14 0 Q5T757;Q05519-2;Q05519;Q5T760 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 LNHVAAGLVS(0.976)PS(0.024)LK 138.28 3.44E-06 75386000 7284.8 6630.1 12243 8232.2 5960 5550.1 6644.3 8742.3 5185.2 10541 TRUE FALSE 7386.809676 7353.99674 9152.10323 7704.223538 6771.852904 6534.332308 7905.021239 7999.587047 5683.261628 8392.738414 0.880142965 0.876233284 1.09047879 0.917963024 0.806870484 0.778569757 0.941888195 0.95315577 0.677164156 1 13.0349259 -6.534289621 21.56934895 0.857790433 0.952103304 0.133607182 0.103907399 81.79333656 154605.5577 0.030602888 0.039575345 2.92E-07 6.534289621 0.094312871 LNHVAAGLVSPS(ph)LK ddPTM_K562_Paclitaxel_30min_R1 1 LNHVAAGLVSPSLK 14 0 Q5T757;Q05519-2;Q05519;Q5T760 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 LNHVAAGLVS(0.253)PS(0.747)LK 119.68 0.00092711 70247000 5196 3712.9 7839.2 5061.6 3896.8 3367 3528.9 5838.1 2992.9 7143.7 TRUE FALSE 5268.760031 4118.286978 5860.097006 4736.971631 4427.610133 3964.090175 4198.490353 5342.116965 3280.381418 5687.810019 0.926324897 0.724054946 1.030290566 0.832828736 0.778438471 0.696944898 0.73815587 0.939222117 0.576738922 1 12.47365756 -6.522535549 13.59457979 0.780631152 0.885763317 0.111966217 0.131278768 0.167850727 3306.332939 0.036338537 0.048391454 3.00E-07 6.522535549 0.105132164 LNLAQFLNEDLS(ph) ddPTM_K562_Paclitaxel_30min_R1 2 LNLAQFLNEDLS 12 0 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 1 LNLAQFLNEDLS(1);LNLAQFLNEDLS(1) 157.03 0.00029855 161206000 678.62 765.03 1003.26 936.15 909.96 758.69 918.09 1170.47 857.22 1079.72 TRUE FALSE 688.1227737 848.5585626 749.9746048 876.1095291 1033.911958 893.233019 1092.292785 1071.031268 939.5598112 859.6724713 0.800447608 0.987071927 0.872395744 1.01912014 1.202681245 1.03903876 1.270591791 1.245859677 1.092927647 1 9.747643298 -6.524674403 3.289748579 1.155283463 0.897976048 0.604961581 0.09182399 0.159656665 3.603100609 0.027167734 0.038871691 2.99E-07 6.524674403 -0.257307415 LNLGTDSDS(ph)SPQK ddPTM_K562_Paclitaxel_30min_R1 1 LNLGTDSDSSPQK 13 0 Q16512;Q16512-2;K7EN76;Q16512-3 Q16512 PKN1 Serine/threonine-protein kinase N1 1 LNLGTDS(0.027)DS(0.883)S(0.091)PQK 191.63 8.32E-05 31778000 2880 3028.9 5766.1 3495.8 2810.1 2402.7 2740.9 3912.1 2010.2 4912.6 TRUE FALSE 2920.328886 3359.605545 4310.376741 3271.595035 3192.883195 2828.785109 3260.971467 3579.742686 2203.288692 3911.409423 0.746618052 0.858924541 1.102000909 0.83642357 0.816299919 0.723213758 0.833707524 0.915205313 0.563297894 1 11.93347284 -6.508601736 24.5863378 0.803637401 0.909998286 0.086719593 0.135080679 1203.267112 2072138.419 0.037862073 0.053778477 3.10E-07 6.508601736 0.106360885 LNLGTDSDSS(ph)PQK ddPTM_K562_Paclitaxel_30min_R1 2 LNLGTDSDSSPQK 13 0 Q16512;Q16512-2;K7EN76;Q16512-3 Q16512 PKN1 Serine/threonine-protein kinase N1 1 LNLGTDSDS(0.086)S(0.914)PQK;LNLGTDSDS(0.311)S(0.688)PQK 190.57 0.00010505 74855000 8174.5 6337.4 13238.2 9289.4 7152.3 6470.1 5462.2 8809.9 4754 12337.5 TRUE FALSE 8288.96822 7029.338764 9896.052682 8693.619462 8126.564349 7617.48139 6498.623935 8061.444005 5210.642941 9823.110728 0.843823148 0.71559193 1.007425545 0.885016947 0.827290313 0.775465288 0.661564765 0.820661013 0.530447339 1 13.26196425 -7.262174547 2.820336389 0.736953923 0.861365345 0.12296796 0.129914587 0.508565666 8.122333987 0.046440359 0.043085129 5.47E-08 7.262174547 0.124411422 LNLTS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 LNLTSPK 7 0 Q8IWZ3-6;Q8IWZ3;Q8IWZ3-4;H0Y785;H0Y472;H0Y4P6;A0A0A0MQZ8;H0Y7Y3 Q8IWZ3-6 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 1 LNLT(0.008)S(0.992)PK 99.013 0.011171 107950000 10808 8451.5 18446 12433 8834.9 8033.7 7156.3 10937 8639 12630 TRUE FALSE 10959.34535 9374.263351 13789.07916 11635.60303 10038.36296 9458.363896 8514.170567 10007.83358 9468.81455 10055.99907 1.089831579 0.932206068 1.371229161 1.157080758 0.99824621 0.940569289 0.846675751 0.995210274 0.941608535 1 13.2957688 -6.891856671 3.901825878 0.940898477 1.139137229 0.419250039 0.107284905 0.233020206 6.64254406 0.035924014 0.041288679 1.28E-07 6.891856671 0.198238752 LNQPGT(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 2 LNQPGTPTR 9 0 M0R1B6;G5E9C7;P36507 M0R1B6 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 1 LNQPGT(0.998)PT(0.002)R;LNQPGT(0.989)PT(0.011)R 124.39 0.0043869 761820000 4396.1 4541.7 5727.2 5305.3 3591.8 4005.9 3807.5 4587.7 3751.9 5044.5 TRUE FALSE 4457.658963 5037.578165 4281.297527 4965.041804 4081.06397 4716.290119 4529.953249 4197.946249 4112.286759 4016.428131 1.109856524 1.254243323 1.065946505 1.236183405 1.016092866 1.174249847 1.12785617 1.045193917 1.023866636 1 11.97169735 -8.344793398 2.250554849 1.011740825 1.144089758 0.396912522 0.067450069 0.323612378 3.071398197 0.046719109 0.018142024 4.52E-09 8.344793398 0.132348933 LNQPGTPT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 LNQPGTPTR 9 0 M0R1B6;G5E9C7;P36507 M0R1B6 MAP2K2 Dual specificity mitogen-activated protein kinase kinase 2 1 LNQPGT(0.19)PT(0.81)R 105.2 0.02078 352680000 2799.1 3017.8 3206.3 3271.2 2869.2 2676.2 2722.3 3093.8 2416.7 3209.9 TRUE FALSE 2838.296036 3347.29361 2396.82991 3061.399873 3260.033616 3150.786494 3238.842214 2830.962379 2648.834833 2555.720618 1.110565848 1.309725948 0.937829391 1.197861711 1.275582939 1.232836826 1.267291186 1.107696342 1.036433644 1 11.31951442 -8.613247918 3.065551109 1.014178395 1.190421893 0.319769485 0.100300299 0.320208343 5.708405633 0.08435511 0.026974126 2.44E-09 8.613247918 0.176243498 LNSEASPS(ph)REAINGQR ddPTM_K562_Paclitaxel_30min_R1 2 LNSEASPSREAINGQR 16 1 Q13111;Q13111-3;Q13111-2;K7EJF1 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 LNS(0.001)EAS(0.412)PS(0.587)REAINGQR;LNSEAS(0.097)PS(0.903)REAINGQR 191.51 2.58E-10 53716000 4124.1 3925.6 5577.1 4861.3 4167.8 3841.8 3925.1 5445.1 2082.06 5519.9 TRUE FALSE 4181.850124 4354.210284 4169.092128 4549.517976 4735.524921 4523.089288 4669.867235 4982.504768 2282.051166 4394.94135 0.951514432 0.990732284 0.94861155 1.035171488 1.077494452 1.029158054 1.062555075 1.133690844 0.519244965 1 12.1016282 -8.742296338 24.99999878 0.759622129 1.027683588 0.445694719 0.119989743 174.6263088 228056.2455 0.075504047 0.028439188 1.81E-09 8.742296338 0.268061459 LNSSSSSSSNSSNEREDFDSTSSS(ph)SSTPPLQPR ddPTM_K562_Paclitaxel_30min_R1 1 LNSSSSSSSNSSNEREDFDSTSSSSSTPPLQPR 33 1 A0A669KAU9;A0A669KAX4;Q13620-1;K4DI93;Q13620 A0A669KAU9 CUL4B Cullin-4B 1 LNSSSSSSSNSSNEREDFDS(0.05)T(0.05)S(0.05)S(0.05)S(0.2)S(0.2)S(0.2)T(0.2)PPLQPR 60.527 0.00047566 29754000 603.55 640.5 773.86 721.62 674.99 647.22 570.89 906.86 635.34 607.17 TRUE FALSE 612.0015621 710.431956 578.489472 675.3385231 766.9350657 761.9953796 679.2133973 829.8165826 696.3672458 483.4284207 1.265961073 1.469570107 1.196639352 1.396977286 1.586450099 1.576232069 1.40499269 1.716524199 1.44047643 1 8.917158481 -5.256251612 23.05808825 1.445043826 1.265960853 0.041731915 0.19370425 551.6298306 2451578.629 0.046992883 0.373806302 5.54E-06 5.256251612 -0.179082973 LNTS(ph)DFQK ddPTM_K562_Paclitaxel_30min_R1 2 LNTSDFQK 8 0 Q96B36-3;Q96B36;Q96B36-2 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 1 LNT(0.105)S(0.895)DFQK;LNT(0.318)S(0.682)DFQK 109.39 0.0097812 57941000 8795.1 5791.7 11773.6 7661.7 4920.7 5267.6 5146.5 8266.2 7446.9 11792.1 TRUE FALSE 8918.258535 6424.057392 8801.209066 7170.312855 5590.982648 6201.734899 6123.021508 7563.934714 8162.208019 9388.863547 0.949876254 0.684220977 0.937409413 0.763704022 0.595490883 0.660541595 0.652157897 0.805628357 0.869349946 1 13.19673483 -8.943857628 2.061832778 0.996166593 0.745363764 0.329371334 0.110893645 0.363504069 3.456958773 0.110247991 0.03093836 1.14E-09 8.943857628 -0.25080283 LNVLEKSS(ph)PGHR ddPTM_K562_Paclitaxel_30min_R1 1 LNVLEKSSPGHR 12 1 E9PQ49;E9PI39;E9PK01;A0A087X1X7;E9PRY8;P29692;P29692-2;E9PPR1;E9PL12;E9PQZ1;P29692-4;E9PK06;E9PMW7;H0YCK7;P29692-3;E9PL71;E9PN91 E9PQ49;P29692-3 EEF1D Elongation factor 1-delta 1 LNVLEKS(0.062)S(0.938)PGHR 101.75 0.026754 26123000 2323.7 1947.5 3278.8 2589.8 1543.7 1554.6 1514.4 1572.6 3237.4 2018 TRUE FALSE 2356.238969 2160.134636 2451.026388 2423.70182 1753.978075 1830.286482 1801.749494 1438.997814 3548.366735 1606.730492 1.466480521 1.344428731 1.525474496 1.508468179 1.091644232 1.139137205 1.1213763 0.895606215 2.208439282 1 10.64991224 -6.74827199 24.97408047 1.226236462 1.457461397 0.087196159 0.343802846 580.5566799 1101114.498 0.098962778 0.126980357 1.79E-07 6.74827199 0.231224934 LPAEGPEPEADS(ph)QEQVHPK ddPTM_K562_Paclitaxel_30min_R1 2 LPAEGPEPEADSQEQVHPK 19 0 O75459 O75459 PAGE1 P antigen family member 1 1 LPAEGPEPEADS(1)QEQVHPK;LPAEGPEPEADS(1)QEQVHPK 101.05 0.00061469 33150000 3593.1 3305.5 5783.9 4094.1 3099.9 2864 2604.5 4444.1 2893.3 5656 TRUE FALSE 3643.414486 3666.405668 4323.682911 3831.522751 3522.158862 3371.890187 3098.690279 4066.545966 3171.214393 4503.304095 0.809053621 0.814159024 0.960113468 0.850824788 0.782127697 0.748759159 0.688092612 0.903013849 0.704197257 1 12.13676819 -5.535252239 24.91288304 0.821949208 0.810329789 0.00060307 0.098449986 3249.713594 6542981.366 0.025062104 0.066369957 2.92E-06 5.535252239 -0.011619419 LPEASQAHVRVS(ph)PGQAAPAMAR ddPTM_K562_Paclitaxel_30min_R1 1 LPEASQAHVRVSPGQAAPAMAR 22 1 Q96HA7-2;Q96HA7 Q96HA7-2 TONSL Tonsoku-like protein 1 LPEASQAHVRVS(1)PGQAAPAMAR 83.221 0.00066498 16863000 1213.2 1230.8 1411 1322.3 967.89 1044.6 1049 1190 907.87 1630.5 TRUE FALSE 1230.188543 1365.182906 1054.775599 1237.493596 1099.733005 1229.845143 1248.042274 1088.902072 995.07497 1298.203205 0.947608617 1.051594158 0.812488827 0.953235666 0.847119311 0.947344097 0.961361264 0.838776293 0.766501705 1 10.34230051 -5.75307586 24.99998799 0.890297073 0.999601382 0.253867009 0.074568851 245.936339 735129.3531 0.018703761 0.047765617 1.77E-06 5.75307586 0.109304309 LPEASQS(ph)PLVLK ddPTM_K562_Paclitaxel_30min_R1 1 LPEASQSPLVLK 12 0 H0Y4T7;E7ESY4;Q13330-3;Q13330;F8W9Y9 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 LPEASQS(1)PLVLK 186.69 0.00049568 28418000 2150.3 1721.5 2895.9 1901.3 1760 1840.7 1690.8 2255.8 1912.1 2942 TRUE FALSE 2180.410834 1909.459192 2164.794229 1779.359128 1999.741797 2167.1223 2011.620473 2064.15571 2095.765748 2342.418785 0.930837324 0.81516559 0.924170453 0.759624683 0.85370806 0.925164328 0.858779176 0.881206949 0.894701563 1 11.19378331 -9.889977955 0.552811571 1.00934632 0.860206343 0.38362025 0.050172765 3.607297305 1.44995203 0.123962074 0.022326973 1.29E-10 9.889977955 -0.149139977 LPEGPVDS(ph)EDDEEEDEEIDRTDPLQGR ddPTM_K562_Paclitaxel_30min_R1 1 LPEGPVDSEDDEEEDEEIDRTDPLQGR 27 1 E9PCH4;Q8TEU7;Q8TEU7-4;D6RD23;D6RIH0;D6RB02;B7Z7Y1;Q8TEU7-6;Q8TEU7-2;Q8TEU7-5;Q8TEU7-3 E9PCH4 RAPGEF6 Rap guanine nucleotide exchange factor 6 1 LPEGPVDS(1)EDDEEEDEEIDRTDPLQGR 112.57 5.27E-10 17283000 197.79 188.38 337.81 296.6 312.9 148.44 199.67 384.29 201.53 331.42 TRUE FALSE 200.5596702 208.9479655 252.5256875 277.5774035 355.5222774 174.7637498 237.5563402 351.6421658 220.887857 263.8764221 0.760051499 0.791840225 0.956984658 1.051921962 1.347305965 0.662293919 0.90025603 1.332601689 0.837088267 1 8.043718638 -5.822904413 2.982440974 1.025614321 0.764726398 0.193295952 0.19560597 0.409302712 7.255245415 0.053615838 0.145237832 1.50E-06 5.822904413 -0.260887923 LPELDPRGS(ph)DEENLDSETSASTESLLEER ddPTM_K562_Paclitaxel_30min_R1 1 LPELDPRGSDEENLDSETSASTESLLEER 29 1 M0R300;M0R0P8;Q13459-2;Q13459;M0R240;M0QXP0 M0R300 MYO9B Unconventional myosin-IXb 1 LPELDPRGS(0.872)DEENLDS(0.022)ET(0.026)S(0.03)AS(0.036)T(0.011)ES(0.004)LLEER 54.683 0.0044403 31347000 1262.1 1277.3 1732.2 1413.9 885.58 1101.1 1564.7 1586.6 971.44 1660 TRUE FALSE 1279.773294 1416.759934 1294.884686 1323.218782 1006.210989 1296.364625 1861.593657 1451.808427 1064.751153 1321.691089 0.968284726 1.071929701 0.979718103 1.001155863 0.761305722 0.980837834 1.408493764 1.098447617 0.805597587 1 10.36816931 -7.5511705 24.9998854 1.101813961 0.957106218 0.113206882 0.156930861 422.4852448 373323.531 0.062037468 0.04805489 2.81E-08 7.5511705 -0.144707743 LPFPIIDDR ddPTM_K562_Paclitaxel_30min_R1 1 LPFPIIDDR 9 0 P30041 P30041 PRDX6 Peroxiredoxin-6 0 128.61 0.0063098 5383100 1413.6 1391.3 1738.8 1411.6 1491.3 1227.1 1466.1 1563.4 855.58 1752.5 FALSE TRUE 1433.394761 1543.206839 1299.818435 1321.066294 1694.440308 1444.708956 1744.284821 1430.579412 937.7622818 1395.339538 1.027273092 1.105972272 0.931542753 0.946770487 1.21435698 1.035381652 1.25007912 1.025255411 0.672067448 1 10.44640051 -8.587348776 9.363597935 0.838370324 1.07294656 0.374962793 0.120693308 0.353308706 47.70777007 0.080270556 0.030193318 2.59E-09 8.587348776 0.234576236 LPFPIIDDRNR ddPTM_K562_Paclitaxel_30min_R1 2 LPFPIIDDRNR 11 1 P30041 P30041 PRDX6 Peroxiredoxin-6 0 ; 161.51 2.51E-39 0 3937.2 3748.4 4800.1 3749.7 3143 3689.7 2889.6 4246.2 4369.9 4237.9 FALSE TRUE 3992.332947 4157.662988 3588.255388 3509.211025 3571.129811 4344.016489 3437.886515 3885.458806 4789.64842 3374.213654 1.183189139 1.232187234 1.063434553 1.040008543 1.058359125 1.287415954 1.01887043 1.151515347 1.419485816 1 11.72033561 -8.542852686 24.99985593 1.234995458 1.125078037 0.057605749 0.125391644 540.3303039 676276.8177 0.080811621 0.030551477 2.87E-09 8.542852686 -0.109917421 LPGPPPAS(ph)PIPTEGPR ddPTM_K562_Paclitaxel_30min_R1 1 LPGPPPASPIPTEGPR 16 0 Q9H6A9;Q9H6A9-3 Q9H6A9 PCNXL3 Pecanex-like protein 3 1 LPGPPPAS(0.994)PIPT(0.006)EGPR 102.72 0.002665 32692000 207.78 325.68 226.56 221.78 176.48 216.82 124.93 392.79 216.31 252.62 TRUE FALSE 210.6895611 361.2388438 169.3621259 207.5560235 200.5195638 255.2699827 148.6348153 359.4200378 237.087542 201.1359053 1.04749851 1.795993824 0.842028307 1.031919304 0.996935696 1.269141789 0.738977037 1.786951152 1.178743008 1 7.652026834 -11.67781853 11.80326237 0.999969772 1.191956264 0.026948678 0.337218792 0.000262703 7.17E-06 0.319768763 0.077543158 2.10E-12 11.67781853 0.191986492 LPGSGAVQAAS(ph)PER ddPTM_K562_Paclitaxel_30min_R1 4 LPGSGAVQAASPER 14 0 Q86U90 Q86U90 YRDC "YrdC domain-containing protein, mitochondrial" 1 LPGS(0.002)GAVQAAS(0.998)PER;LPGSGAVQAAS(1)PER;LPGSGAVQAAS(1)PER;LPGSGAVQAAS(1)PER 122.16 0.00069144 383900000 1246.69 1377.4 2037.42 1763.39 1199.63 1347.02 1353.47 1799.02 979.49 1561.3 TRUE FALSE 1264.147506 1527.78919 1523.048123 1650.294058 1363.039916 1585.895084 1610.283867 1646.182022 1073.574391 1243.106203 1.016926392 1.229009385 1.225195497 1.327556772 1.096479056 1.275751887 1.295371114 1.3242489 0.863622423 1 10.27973384 -8.764823135 24.99998929 0.931811108 1.22736603 0.583990816 0.098546201 61.32806619 453071.2494 0.082060319 0.024550511 1.72E-09 8.764823135 0.295554923 LPGSGAVQAAS(ph)PERAGWTEALR ddPTM_K562_Paclitaxel_30min_R1 1 LPGSGAVQAASPERAGWTEALR 22 1 Q86U90 Q86U90 YRDC "YrdC domain-containing protein, mitochondrial" 1 LPGS(0.004)GAVQAAS(0.992)PERAGWT(0.003)EALR 72.755 0.0021855 41803000 214.21 384.3 256.52 227.72 310.8 252.29 165.04 216.71 563.46 308.86 TRUE FALSE 217.2096009 426.2591736 191.7583534 213.1150584 353.1362219 297.0300892 196.3554784 198.2991328 617.5828506 245.9141625 0.883274061 1.733365697 0.779777592 0.866623769 1.43601417 1.207860849 0.798471615 0.806375407 2.511375695 1 7.942011013 -8.730334136 24.99986615 1.75569269 1.078580067 0.272403197 0.451692003 217.1633943 174538.9523 0.28892521 0.109179112 1.86E-09 8.730334136 -0.677112623 LPISSS(ph)TSNLHVDR ddPTM_K562_Paclitaxel_30min_R1 1 LPISSSTSNLHVDR 14 0 G3V3H1;Q86TV6;Q86TV6-2 G3V3H1 TTC7B Tetratricopeptide repeat protein 7B 1 LPISS(0.021)S(0.976)T(0.002)SNLHVDR 174.52 2.86E-06 8568600 1254.7 1102.8 1321.6 1061 1073.2 1080.2 1174.8 1676.2 865.68 1566.1 TRUE FALSE 1272.269671 1223.207433 987.9457347 992.9522089 1219.388009 1271.758303 1397.712167 1533.796347 948.832432 1246.92796 1.020323316 0.980976827 0.792303779 0.796318825 0.977913759 1.019913214 1.120924553 1.230060113 0.760936046 1 10.2841624 -7.055271672 3.687700406 1.045390129 0.894944768 0.169936142 0.129477413 0.37780279 10.32007438 0.044613177 0.046432299 8.80E-08 7.055271672 -0.15044536 LPLCSLPGEPGNGPDQQLQRS(ph)PPEFQ ddPTM_K562_Paclitaxel_30min_R1 2 LPLCSLPGEPGNGPDQQLQRSPPEFQ 26 1 Q96GX2 Q96GX2 ATXN7L3B Putative ataxin-7-like protein 3B 1 LPLCSLPGEPGNGPDQQLQRS(1)PPEFQ;LPLCSLPGEPGNGPDQQLQRS(1)PPEFQ 151.35 4.11E-26 199238000 4642.9 4226.1 5274 4656.4 3757.3 4283.8 3777.4 4893.1 4448.7 5030.4 TRUE FALSE 4707.914925 4687.51989 3942.513472 4357.759345 4269.107872 5043.471782 4494.141931 4477.400613 4876.017512 4005.201719 1.175450141 1.170358004 0.984348292 1.088024936 1.065890852 1.259230405 1.122076301 1.117896408 1.217421207 1 11.96765919 LPLGGWAEDGQSASRHPEPVPEEGS(ph)EDELPPQVHKV ddPTM_K562_Paclitaxel_30min_R1 1 LPLGGWAEDGQSASRHPEPVPEEGSEDELPPQVHKV 36 2 H7C152;Q7Z3C6-2;Q7Z3C6 H7C152 ATG9A Autophagy-related protein 9A 1 LPLGGWAEDGQS(0.179)AS(0.032)RHPEPVPEEGS(0.789)EDELPPQVHKV 40.753 0.013905 12043000 983.35 887.78 1761.9 992.21 871.06 655.71 691.6 1245.1 1614.6 1240.3 TRUE FALSE 997.1199339 984.7108227 1317.086554 928.5740916 989.7131192 771.9909619 822.8274896 1139.320983 1769.689544 987.5261792 1.009714937 0.997149082 1.333723178 0.940303266 1.002214564 0.781742275 0.833220938 1.153712182 1.79204317 1 9.947675184 -8.531508603 24.96892949 1.421640458 0.990581062 0.345441514 0.224538113 202.6887406 586427.3858 0.146300288 0.055483637 2.94E-09 8.531508603 -0.431059397 LPLLPPES(ph)PGPLR ddPTM_K562_Paclitaxel_30min_R1 4 LPLLPPESPGPLR 13 0 A0A0G2JMS7;A0A0G2JNZ2;A0A0G2JPP5;A0A669KB89;Q14160-2;Q14160;Q14160-3;A0A669KAX5 A0A0G2JMS7 SCRIB Protein scribble homolog 1 LPLLPPES(1)PGPLR;LPLLPPES(1)PGPLR;LPLLPPES(1)PGPLR;LPLLPPES(1)PGPLR 198.48 1.28E-06 169746200 7293.2 6776.6 8988.4 7495 5980.82 7183.4 7934.1 9619 5610.8 10866.2 TRUE FALSE 7395.327301 7516.492105 6719.167253 7014.304246 6795.50894 8457.27513 9439.554056 8801.80591 6149.74241 8651.662475 0.854786848 0.868791649 0.776633077 0.810746405 0.78545701 0.977531793 1.091068229 1.017354287 0.710816265 1 13.07876167 -7.267392492 24.49815773 0.968670899 0.819189782 0.346602352 0.095732953 424.8722187 1748421.375 0.034120877 0.030882546 5.40E-08 7.267392492 -0.149481117 LPLPS(ph)PALEYTLGSR ddPTM_K562_Paclitaxel_30min_R1 2 LPLPSPALEYTLGSR 15 0 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 LPLPS(0.996)PALEYT(0.004)LGSR;LPLPS(1)PALEYTLGSR 169.98 8.20E-06 27843000 2469.6 2287.3 2283.8 2040.5 1278.41 1468.07 2031.08 2131.4 1696.23 2888.9 TRUE FALSE 2504.182019 2537.035149 1707.226444 1909.631463 1452.551086 1728.411602 2416.466827 1950.324266 1859.16047 2300.140594 1.088708241 1.102991337 0.742226996 0.830223799 0.631505348 0.751437371 1.050573532 0.847915241 0.808281231 1 11.16750633 -5.751481132 24.99088127 0.82493378 1.095849961 0.45481055 0.114958101 180.6942382 453455.1247 0.030579152 0.078862293 1.77E-06 5.751481132 0.270916181 LPLQLDDAVRPEAEGEEEGR ddPTM_K562_Paclitaxel_30min_R1 2 LPLQLDDAVRPEAEGEEEGR 20 1 C9J7S3;C9JLC1;P14868-2;P14868 C9J7S3 DARS "Aspartate--tRNA ligase, cytoplasmic" 0 ; 110.34 0.0017339 29957000 544.71 651.73 904.68 624.48 642.94 482.74 723.48 679.95 622.76 835.8 FALSE TRUE 552.3376206 722.8880854 676.2823451 584.4286479 730.5193131 568.347161 860.7565532 622.1840034 682.5788806 665.4635012 0.83000438 1.086292613 1.016257607 0.878227952 1.09776015 0.854062109 1.293469216 0.934963379 1.025719486 1 9.37821573 LPLS(ph)PPLVEDSAFEPSRK ddPTM_K562_Paclitaxel_30min_R1 1 LPLSPPLVEDSAFEPSRK 18 1 O96007 O96007 MOCS2 Molybdopterin synthase catalytic subunit 1 LPLS(1)PPLVEDSAFEPSRK 140.77 7.00E-11 25932000 2250.2 1843.1 3880.5 2521.4 1945.9 1923.9 1820.5 2808.2 1501.2 3117.2 TRUE FALSE 2281.709742 2044.335891 2900.819782 2359.688689 2210.964524 2265.076652 2165.930371 2569.625882 1645.396968 2481.912929 0.919335129 0.823693639 1.168783863 0.950754018 0.890830818 0.912633407 0.872685881 1.035340866 0.662955154 1 11.27723679 -6.675242495 5.44406829 0.897333373 0.971727047 0.073648565 0.122084831 0.598139642 28.89564239 0.035703271 0.046076663 2.11E-07 6.675242495 0.074393674 LPLVPES(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 LPLVPESPR 9 0 C9J0I9;Q86WB0-2;Q86WB0;Q86WB0-3 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 LPLVPES(1)PR;LPLVPES(1)PR;LPLVPES(1)PR;LPLVPES(1)PR 144.7 0.0005162 216436000 3407.61 3305.01 3924.75 3468.5 3199.7 3428.05 3186.47 3464.79 2524.2 4012.39 TRUE FALSE 3455.327053 3665.862169 2933.898322 3246.045934 3635.553311 4035.966535 3791.086048 3170.434463 2766.660688 3194.662716 1.081593696 1.147495838 0.918374984 1.016084083 1.138008496 1.26334668 1.186693678 0.992416022 0.866025911 1 11.64144791 -8.478156505 6.245221538 0.931037117 1.104772599 0.376083627 0.093252465 0.227075092 23.34231105 0.060101833 0.027332664 3.33E-09 8.478156505 0.173735483 LPLVPES(ph)PRR ddPTM_K562_Paclitaxel_30min_R1 6 LPLVPESPRR 10 1 C9J0I9;Q86WB0-2;Q86WB0;Q86WB0-3 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR;LPLVPES(1)PRR 153.74 0.00040622 1935653000 15748.6 14349.9 18868.6 16454.7 13796.5 14084 14038.5 17439.4 11670.2 19169.7 TRUE FALSE 15969.12899 15916.67061 14104.98857 15399.36919 15675.81688 16581.59965 16702.23209 15957.81412 12791.17485 15262.90462 1.04627064 1.042833655 0.924135276 1.008940931 1.027053321 1.086398695 1.09430233 1.045529309 0.838056397 1 13.89774192 -8.737201684 24.99966815 0.919028144 1.033668582 0.395182894 0.057101707 205.5993881 212064.1382 0.040153747 0.015160247 1.83E-09 8.737201684 0.114640438 LPS(ph)EPGMT(ph)LLT(ph)IR ddPTM_K562_Paclitaxel_30min_R1 1 LPSEPGMTLLTIR 13 0 Q96BJ3 Q96BJ3 AIDA "Axin interactor, dorsalization-associated protein" 3 LPS(1)EPGMT(1)LLT(1)IR 72.705 0.029222 20685000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 LPSGS(ph)GAAS(ph)PTGSAVDIR ddPTM_K562_Paclitaxel_30min_R1 1 LPSGSGAASPTGSAVDIR 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 2 LPS(0.001)GS(0.987)GAAS(0.822)PT(0.125)GS(0.065)AVDIR 130.87 7.06E-08 5412200 1432.8 1217.2 1584.1 1306.5 1315.6 1309.8 1409.7 1498.6 1032.7 1809.4 TRUE FALSE 1452.863621 1350.098012 1184.174363 1222.706938 1494.806993 1542.074639 1677.183216 1371.284576 1131.895449 1440.643287 1.008482554 0.937149414 0.821976109 0.848722893 1.03759689 1.070406987 1.164190491 0.951855736 0.785687519 1 10.49249744 -6.769476077 24.99663794 1.010783313 0.900579885 0.176563617 0.101937532 312.9961835 973513.465 0.034212087 0.039474604 1.70E-07 6.769476077 -0.110203428 LPSGSGAAS(ph)PTGSAVDIR ddPTM_K562_Paclitaxel_30min_R1 3 LPSGSGAASPTGSAVDIR 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 LPSGSGAAS(0.731)PT(0.269)GSAVDIR;LPSGSGAAS(0.754)PT(0.238)GS(0.008)AVDIR;LPSGSGAAS(0.98)PT(0.02)GSAVDIR 269.34 2.52E-114 445680000 975.84 1019.6 1187.81 1162.88 971.95 1069.88 782.62 1280.84 638.37 1280.87 TRUE FALSE 989.5047707 1130.923376 887.9326749 1088.298082 1104.346045 1259.608196 931.1180594 1172.024647 699.6882908 1019.827991 0.970266339 1.108935415 0.870669057 1.067138862 1.082874813 1.235118282 0.91301481 1.149237575 0.686084611 1 9.994110126 -8.751619423 24.99886859 0.843042256 1.048983887 0.305153354 0.124708049 206.9630544 526879.4579 0.082100204 0.030188213 1.77E-09 8.751619423 0.20594163 LPSGSGAASPT(ph)GSAVDIR ddPTM_K562_Paclitaxel_30min_R1 1 LPSGSGAASPTGSAVDIR 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 LPSGSGAAS(0.028)PT(0.972)GSAVDIR 294.93 1.62E-178 61583000 190.12 241.61 178.17 151.55 131.71 164.72 208.64 224.83 109.97 291.9 TRUE FALSE 192.7822666 267.9897969 133.1887799 141.8302613 149.6511319 193.9307792 248.2283508 205.7292882 120.5331099 232.4106198 0.829489921 1.15308757 0.573075275 0.610257231 0.643908321 0.83443166 1.068059416 0.885197451 0.518621352 1 7.860532183 -11.26039082 17.21658648 1.000006421 0.797541221 0.089568278 0.199127636 0 0 0.203196287 0.049282339 5.49E-12 11.26039082 -0.2024652 LPSPS(ph)E ddPTM_K562_Paclitaxel_30min_R1 1 LPSPSE 6 0 Q8TB37 Q8TB37 NUBPL Iron-sulfur protein NUBPL 1 LPS(0.163)PS(0.837)E 82.305 0.016152 7252800 2453.3 2204.9 3098 3291.8 2714 2347 1731.1 2012.5 1975.6 2199.4 TRUE FALSE 2487.653769 2445.638438 2315.871584 3080.678682 3083.692748 2763.207496 2059.567188 1841.525563 2165.365207 1751.161073 1.420573931 1.396581089 1.322477767 1.759220628 1.76094181 1.577928804 1.176115219 1.051602615 1.236531146 1 10.77409607 -7.81374874 5.139461409 1.111856496 1.543689228 0.669402841 0.146225621 0.137555368 7.68954624 0.069762729 0.047328848 1.54E-08 7.81374874 0.431832732 LPSS(ph)PLGCR ddPTM_K562_Paclitaxel_30min_R1 2 LPSSPLGCR 9 0 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 LPS(0.182)S(0.818)PLGCR;LPS(0.038)S(0.962)PLGCR 119.22 0.0030502 54423000 5460.1 5226.3 6469.9 5167.4 4712.4 4941 4556 5912 3569.9 6368.4 TRUE FALSE 5536.558246 5796.925108 4836.493726 4835.986092 5354.308662 5817.216975 5420.477216 5409.738698 3912.804846 5070.516584 1.091912067 1.143261246 0.953846348 0.953746233 1.055969066 1.147263179 1.069018733 1.066900898 0.771677753 1 12.30791702 -8.736525888 24.91450385 0.885838871 1.058961987 0.430550405 0.080216891 179.4762922 179484.5873 0.055533575 0.020969916 1.83E-09 8.736525888 0.173123116 LPSS(ph)PVYEDAASFK ddPTM_K562_Paclitaxel_30min_R1 2 LPSSPVYEDAASFK 14 0 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 LPSS(1)PVYEDAASFK;LPS(0.014)S(0.986)PVYEDAASFK 196.37 8.08E-09 163861000 8562 7474.6 13832.5 9547.7 7286.3 6271.2 7016.2 10113.7 4674.2 10957.6 TRUE FALSE 8681.894416 8290.702105 10340.3143 8935.353256 8278.817418 7383.309268 8347.487323 9254.478057 5123.177795 8724.435105 0.995123961 0.950285263 1.185213045 1.024175565 0.948923033 0.84627935 0.956794018 1.060753842 0.587221721 1 13.09084601 -6.857798496 3.363524813 0.898213036 1.0439257 0.221029925 0.130833261 0.391252362 8.735195038 0.041529805 0.048691609 1.39E-07 6.857798496 0.145712664 LQAALDDEEAGGRPAMEPGNGS(ph)LDLGGDSAGR ddPTM_K562_Paclitaxel_30min_R1 8 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR 32 1 A0A1W2PPS1;Q00839-2;Q00839;A0A1X7SBS1 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 LQAALDDEEAGGRPAMEPGNGS(0.999)LDLGGDS(0.001)AGR;LQAALDDEEAGGRPAMEPGNGS(0.999)LDLGGDS(0.001)AGR;LQAALDDEEAGGRPAMEPGNGS(0.999)LDLGGDS(0.001)AGR;LQAALDDEEAGGRPAMEPGNGS(1)LDLGGDSAGR;LQAALDDEEAGGRPAMEPGNGS(0.946)LDLGGDS(0.054)AGR;LQAALDDEEAGGRPAMEPGNGS(0.966)LDLGGDS(0.034)AGR;LQAALDDEEAGGRPAMEPGNGS(0.999)LDLGGDS(0.001)AGR;LQAALDDEEAGGRPAMEPGNGS(0.996)LDLGGDS(0.004)AGR 129.54 1.34E-21 3581415000 8831.51 8126.08 10564.16 10088.37 8023.07 8021.95 8240.05 9906.61 9778.87 11533.32 TRUE FALSE 8955.178388 9013.312895 7897.107152 9441.347102 9115.947966 9444.530199 9803.556472 9064.981645 10718.17416 9182.823053 0.97520973 0.981540518 0.859986859 1.028153003 0.992717372 1.028499639 1.067597232 0.987167192 1.167198158 1 13.16472203 -6.928594981 1.215404599 1.054521445 0.947256096 0.363163023 0.058713125 0.495646765 1.541335431 0.024802862 0.03040861 1.18E-07 6.928594981 -0.107265349 LQAALDDEEAGGRPAMEPGNGSLDLGGDS(ph)AGR ddPTM_K562_Paclitaxel_30min_R1 1 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR 32 1 A0A1W2PPS1;Q00839-2;Q00839;A0A1X7SBS1 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 LQAALDDEEAGGRPAMEPGNGS(0.059)LDLGGDS(0.941)AGR 87.359 5.80E-08 195400000 722.82 834.48 1013 1009.8 675.99 909.86 729.25 889.89 865.24 1116.7 TRUE FALSE 732.9417101 925.5913484 757.2556214 945.0359477 768.0712826 1071.210896 867.6213806 814.28829 948.350168 889.115927 0.82434887 1.041024371 0.851695036 1.062893959 0.863859548 1.204804529 0.97582481 0.915840404 1.066621505 1 9.796227726 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR ddPTM_K562_Paclitaxel_30min_R1 1 LQAALDDEEAGGRPAMEPGNGSLDLGGDSAGR 32 1 A0A1W2PPS1;Q00839-2;Q00839;A0A1X7SBS1 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 0 109.69 2.26E-13 44025000 665 776.05 886.63 677.51 681.14 598.91 740.5 997.13 598.56 726.55 FALSE TRUE 674.3120517 860.7817634 662.7892908 634.057541 773.9227998 705.1182794 881.0060093 912.4175826 656.0543624 578.4787112 1.165664421 1.488009406 1.145745345 1.096077572 1.33785874 1.218918286 1.522970495 1.577270805 1.134102863 1 9.176120057 -7.651144049 18.76509275 1.358832057 1.246548896 0.001056727 0.189919556 5.134405824 845.3805506 0.071259227 0.055196672 2.23E-08 7.651144049 -0.11228316 LQAITASSANLRHS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 LQAITASSANLRHSPR 16 1 Q9Y2K7-5;I3VM54;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7 Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 LQAITASSANLRHS(1)PR 81.357 0.01429 81433000 2116.7 2166.4 2633.4 2280.7 2345.6 2349.7 1955 3043.3 2551.4 2813 TRUE FALSE 2146.340331 2402.934878 1968.565601 2134.42611 2665.110431 2766.386304 2325.951044 2784.752669 2796.47337 2239.709056 0.958312119 1.072878137 0.87893809 0.952992579 1.189935998 1.235154314 1.038505889 1.24335465 1.248587785 1 11.12909562 -6.760317212 24.99787961 1.169181554 0.967227042 0.522580337 0.090292791 23.18001308 516356.8489 0.026857549 0.032737984 1.74E-07 6.760317212 -0.201954512 LQALVNSLCAGQS(ph)P ddPTM_K562_Paclitaxel_30min_R1 2 LQALVNSLCAGQSP 14 0 Q6XQN6-3;Q6XQN6;Q6XQN6-2 Q6XQN6-3 NAPRT Nicotinate phosphoribosyltransferase 1 LQALVNSLCAGQS(1)P;LQALVNSLCAGQS(1)P 200.63 3.40E-09 29586000 6848.2 6647.9 7680.5 6923.8 5685.8 5986.3 6108.5 8094.4 6584.1 9258.5 TRUE FALSE 6944.095929 7373.740204 5741.462784 6479.738458 6460.302221 7047.886253 7267.555986 7406.730196 7216.532224 7371.612618 0.942004998 1.000288619 0.778861164 0.87901234 0.876375707 0.956084729 0.985884143 1.004763894 0.978962487 1 12.84776454 -7.475943838 3.097523883 0.992275503 0.893944534 0.430043366 0.052872718 0.274090549 5.258870743 0.02225537 0.018252558 3.34E-08 7.475943838 -0.098330968 LQAVTDDHIR ddPTM_K562_Paclitaxel_30min_R1 4 LQAVTDDHIR 10 0 A0A2R8YEP4;P30043 A0A2R8YEP4 BLVRB Flavin reductase (NADPH) 0 ;;; 152.69 0.00048493 78714400 13840.2 13175.6 15342 14768 13273.7 12677.3 14707.2 17076.4 12252.2 18659.9 FALSE TRUE 14034.0055 14614.15657 11468.72235 13820.84658 15081.80267 14925.44116 17497.81442 15625.65323 13429.07855 14857.00214 0.944605471 0.98365447 0.771940547 0.9302581 1.015130948 1.004606516 1.177748664 1.051736621 0.903888849 1 13.85885542 -6.759026168 3.48480583 1.036976334 0.90043767 0.337517205 0.081101697 0.26510049 6.801218023 0.026676806 0.033054961 1.74E-07 6.759026168 -0.136538665 LQDEIQNMKEEMAR ddPTM_K562_Paclitaxel_30min_R1 2 LQDEIQNMKEEMAR 14 1 P08670;B0YJC4;B0YJC5 P08670 VIM Vimentin 0 ; 132.31 0.00047126 20397000 2020.91 1548.26 3603.7 2556.3 1935.27 1777.22 1599.13 2631.1 2331.11 3033.8 FALSE TRUE 2049.208975 1717.304263 2693.901365 2392.35036 2198.886538 2092.385014 1902.556569 2407.571632 2555.023531 2415.509895 0.848354618 0.710948966 1.115251637 0.990412155 0.910319822 0.866229121 0.787641803 0.996713629 1.057757427 1 11.23811205 -5.741081686 24.99998321 0.954439087 0.779651768 0.37977573 0.09417083 281.4716705 345652.1505 0.025586534 0.06751881 1.82E-06 5.741081686 -0.174787318 LQDISELLATGAGLS(ph)ESEAEPDGDHNITELPQAVAGR ddPTM_K562_Paclitaxel_30min_R1 1 LQDISELLATGAGLSESEAEPDGDHNITELPQAVAGR 37 0 A8MV53;A0A0A6YYI3;A0A0B4J1V8;Q9NQ55-2;Q9NQ55;Q9NQ55-3;C9J3W3 A8MV53 PPAN;PPAN-P2RY11 Suppressor of SWI4 1 homolog 1 LQDISELLAT(0.134)GAGLS(0.801)ES(0.064)EAEPDGDHNITELPQAVAGR 108.08 1.81E-20 24336000 387.04 478 564.79 517.84 536.46 312.21 402.85 418.77 322.98 549.09 TRUE FALSE 392.4597541 530.1896565 422.2017793 484.6280602 609.5349343 367.5760599 479.2886845 383.1928746 354.0036721 437.1851566 0.897696887 1.212734807 0.965727617 1.108519017 1.394226051 0.840778911 1.096305941 0.876500194 0.809733969 1 8.772100609 -8.263397893 24.41167803 0.882337791 1.079613622 0.215649394 0.154942543 181.1016953 2257265.901 0.07808064 0.040451912 5.45E-09 8.263397893 0.197275831 LQDMLANLRDVDELPSLQPSVGS(ph)PSRPSSSR ddPTM_K562_Paclitaxel_30min_R1 2 LQDMLANLRDVDELPSLQPSVGSPSRPSSSR 31 2 O43815-2;O43815 O43815-2 STRN Striatin 1 LQDMLANLRDVDELPSLQPS(0.047)VGS(0.44)PS(0.44)RPS(0.019)S(0.049)S(0.005)R;LQDMLANLRDVDELPSLQPS(0.024)VGS(0.453)PS(0.453)RPS(0.034)S(0.034)S(0.003)R 96.466 1.06E-10 23677000 1738.91 1467.13 1893.29 1731.67 1418.6 1274.25 1668.82 1683.41 1604.66 1747.09 TRUE FALSE 1763.260105 1627.316215 1415.305524 1620.608437 1611.837337 1500.220346 1985.469883 1540.393813 1758.794763 1391.032099 1.267591241 1.169862447 1.017449939 1.165040288 1.158734826 1.078494412 1.427335778 1.107374743 1.264381148 1 10.44194 LQDS(ph)SDPDTGSEEEGS(ph)S(ph)RLSPPHSPR ddPTM_K562_Paclitaxel_30min_R1 1 LQDSSDPDTGSEEEGSSRLSPPHSPR 26 1 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF0 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 3 LQDS(0.479)S(0.407)DPDT(0.241)GS(0.392)EEEGS(0.591)S(0.439)RLS(0.254)PPHS(0.196)PR 51.53 0.026343 22186000 873.73 783.35 940.99 785.07 748.77 825.16 622.88 975.96 385.77 864.52 TRUE FALSE 885.9649157 868.8788021 703.4254365 734.719124 850.7651508 971.4905402 741.0682283 893.0461062 422.8249322 688.3303495 1.28712168 1.262299131 1.021930004 1.067393185 1.235983785 1.41137252 1.076617105 1.297409168 0.614276172 1 9.426957312 -8.752693345 24.99999857 0.807138046 1.201865871 0.554758595 0.143403301 121.9915956 348712.448 0.099238458 0.036241956 1.77E-09 8.752693345 0.394727826 LQDS(ph)SDPDTGSEEEGSSRLS(ph)PPHSPR ddPTM_K562_Paclitaxel_30min_R1 1 LQDSSDPDTGSEEEGSSRLSPPHSPR 26 1 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF0 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 2 LQDS(0.809)S(0.183)DPDT(0.021)GS(0.078)EEEGS(0.078)S(0.078)RLS(0.704)PPHS(0.049)PR 51.39 0.024925 18057000 863.09 1014.2 1628.8 1227.3 1114.5 805.67 823.73 1176.9 913.97 1676.9 TRUE FALSE 875.1759229 1124.933786 1217.589295 1148.586471 1266.313769 948.5442623 980.0284673 1076.914999 1001.760902 1335.14686 0.65549038 0.842554344 0.911951585 0.860269762 0.948445304 0.710441893 0.734022973 0.806589171 0.75030016 1 10.38278272 -7.276641345 24.97547742 0.784042181 0.848383887 0.029744402 0.103749653 2215.381404 3639663.462 0.035923567 0.03180003 5.29E-08 7.276641345 0.064341707 LQDSSDPDTGSEEEGS(ph)S(ph)RLSPPHSPR ddPTM_K562_Paclitaxel_30min_R1 1 LQDSSDPDTGSEEEGSSRLSPPHSPR 26 1 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF0 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 2 LQDS(0.007)S(0.006)DPDT(0.018)GS(0.081)EEEGS(0.625)S(0.626)RLS(0.585)PPHS(0.052)PR 63.115 0.0035724 39173000 5049.9 4406.2 6527.8 6112.5 5395.8 4559.7 4610.8 6575.7 3349 6755.1 TRUE FALSE 5120.61418 4887.283817 4879.776155 5720.471609 6130.799312 5368.298774 5485.67523 6017.053241 3670.686414 5378.406912 0.952068942 0.90868614 0.907290251 1.063599631 1.139891312 0.998120607 1.019944255 1.118742657 0.682485813 1 12.39296319 -6.247031852 24.00020574 1.014377153 0.921282202 0.08298164 0.11875391 1087.13502 1810953.95 0.031678748 0.05450272 5.66E-07 6.247031852 -0.093094951 LQDSSDPDTGSEEEGS(ph)SRLSPPHSPR ddPTM_K562_Paclitaxel_30min_R1 1 LQDSSDPDTGSEEEGSSRLSPPHSPR 26 1 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF0 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 LQDSSDPDT(0.178)GS(0.121)EEEGS(0.339)S(0.339)RLS(0.021)PPHS(0.003)PR 79.589 8.79E-05 71707000 3131.8 2773.3 4220.4 3644.1 2942.1 3181.6 2995.5 4071 3655.9 4158.4 TRUE FALSE 3175.654862 3076.098273 3154.907823 3410.383736 3342.86383 3745.812088 3563.880487 3725.14314 4007.06553 3310.915797 0.959146972 0.929077772 0.952880718 1.030042425 1.009649304 1.131352265 1.076403239 1.125109597 1.210258966 1 11.69301461 -6.816272033 1.051388432 1.119641221 0.939741566 0.617210116 0.053543846 0.316755664 0.750056285 0.023557476 0.033799113 1.53E-07 6.816272033 -0.179899655 LQDSSDPDTGSEEEGSSRLS(ph)PPHS(ph)PRDFTR ddPTM_K562_Paclitaxel_30min_R1 2 LQDSSDPDTGSEEEGSSRLSPPHSPRDFTR 30 2 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 2 LQDSSDPDT(0.007)GS(0.007)EEEGS(0.145)S(0.145)RLS(0.712)PPHS(0.981)PRDFT(0.003)R;LQDS(0.001)S(0.001)DPDT(0.01)GS(0.01)EEEGS(0.345)S(0.345)RLS(0.513)PPHS(0.769)PRDFT(0.004)R 71.097 0.00044538 42566000 4954.5 4505.2 5948 4798.4 4526.8 4282.9 4266.5 4721.9 5747.3 5186.7 TRUE FALSE 5023.878286 4997.092972 4446.353836 4490.652101 5143.426799 5042.41218 5076.046102 4320.745122 6299.353845 4129.647693 1.216539196 1.210053095 1.076690838 1.087417725 1.245488037 1.221027205 1.229171707 1.046274511 1.525397398 1 12.01180299 -6.77736284 24.98657132 1.214927499 1.147060447 0.048259635 0.137661828 794.5257036 1246738.41 0.040734574 0.046332756 1.67E-07 6.77736284 -0.067867053 LQDSSDPDTGSEEEGSSRLS(ph)PPHSPR ddPTM_K562_Paclitaxel_30min_R1 2 LQDSSDPDTGSEEEGSSRLSPPHSPR 26 1 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF0 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 LQDSS(0.001)DPDT(0.021)GS(0.035)EEEGS(0.137)S(0.054)RLS(0.743)PPHS(0.009)PR;LQDSSDPDT(0.08)GS(0.056)EEEGS(0.072)S(0.072)RLS(0.553)PPHS(0.167)PR 85.17 5.43E-05 84360000 3314 3477.5 4994.8 4512.9 4066.2 3669.5 3306.8 4171.5 3228.3 5254.1 TRUE FALSE 3360.406225 3857.18521 3733.800965 4223.462793 4620.085281 4320.234303 3934.248037 3817.105037 3538.392639 4183.311536 0.803288542 0.92204111 0.892546714 1.00959796 1.104408611 1.032730712 0.940462598 0.912460142 0.845835317 1 12.03042973 -5.354349431 1.345895284 0.975950906 0.758686835 0.348662723 0.069688347 1.427690771 2.626587864 0.023269213 0.405116779 4.42E-06 5.354349431 -0.217264071 LQEDPNYS(ph)PQRFPNAQR ddPTM_K562_Paclitaxel_30min_R1 1 LQEDPNYSPQRFPNAQR 17 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710;P46379-4;H0Y4L1 P46379-3;P46379-4 BAG6;BAT3 Large proline-rich protein BAG6 1 LQEDPNY(0.285)S(0.715)PQRFPNAQR 76.301 0.015289 134990000 1784.2 2097.7 2384.3 1786.3 2013 1381.9 1514.9 1782.6 1769.5 2215.6 TRUE FALSE 1809.184305 2326.73398 1782.353976 1671.734713 2287.20468 1626.960562 1802.344367 1631.157003 1939.468381 1764.059504 1.02558009 1.318965701 1.010370666 0.947663449 1.296557557 0.922282133 1.021702705 0.924660988 1.099434785 1 10.78468351 -7.313782182 24.99992826 0.990662857 1.115246036 0.216697932 0.11975499 553.3467961 264287.3573 0.041505351 0.036604304 4.86E-08 7.313782182 0.124583179 LQEEERERR ddPTM_K562_Paclitaxel_30min_R1 3 LQEEERERR 9 2 H3BNC9;H0YN88;A0A075B716;P08708 H3BNC9 RPS17 40S ribosomal protein S17 0 ;; 120.87 0.0015228 14117900 1722.07 1445.19 2275.23 1824.68 1475.4 1579.72 1428.89 1324.93 3522.3 1553.39 FALSE TRUE 1746.184293 1602.980732 1700.820047 1707.653192 1676.374459 1859.861162 1700.014418 1212.368927 3860.632653 1236.808265 1.411847205 1.296062435 1.375168726 1.380693548 1.355403667 1.503758678 1.374517349 0.980239994 3.121447973 1 10.27240615 LQEEGGGS(ph)DEEETGSPSEDGMQSAR ddPTM_K562_Paclitaxel_30min_R1 1 LQEEGGGSDEEETGSPSEDGMQSAR 25 0 Q13610-2;Q13610 Q13610-2 PWP1 Periodic tryptophan protein 1 homolog 1 LQEEGGGS(1)DEEETGSPSEDGMQSAR 122.7 3.47E-10 33600000 643.92 480.06 741.23 697.18 329.03 449.9 560.09 726.51 441.43 675.95 TRUE FALSE 652.9368667 532.4745743 554.0973191 652.4659953 373.8494565 529.6834481 666.3641536 664.7884408 483.8313239 538.191019 1.213206545 0.989378409 1.02955512 1.21233163 0.694640831 0.984192284 1.238155469 1.235227674 0.898995537 1 9.071974506 -10.85242477 16.24701408 1.000000984 1.055015645 0.009656713 0.167324226 0 0 0.165104743 0.040043782 1.40E-11 10.85242477 0.055014661 LQEKLSPPYS(ph)SPQEFAQDVGR ddPTM_K562_Paclitaxel_30min_R1 1 LQEKLSPPYSSPQEFAQDVGR 21 1 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 LQEKLS(0.152)PPY(0.089)S(0.554)S(0.204)PQEFAQDVGR 54.74 0.027904 13900000 668.13 733.8 1539 985.69 549.93 593.03 451.02 996.73 789.63 982.67 TRUE FALSE 677.4858814 813.9187656 1150.460416 922.4722552 624.8397764 698.1955439 536.5986905 912.0515651 865.4774897 782.4013146 0.865905858 1.040282973 1.470422396 1.179026975 0.798618004 0.892375218 0.68583562 1.165708119 1.106181027 1 9.611764984 -5.260787705 19.74745783 1.037729329 0.865905086 0.057887611 0.207801294 10.97954296 330950.4699 0.057108079 0.328201262 5.49E-06 5.260787705 -0.171824242 LQELESCSGLGS(ph)TSDDTDVR ddPTM_K562_Paclitaxel_30min_R1 3 LQELESCSGLGSTSDDTDVR 20 0 Q14C86-4;Q14C86-2;Q14C86-6;F8W9S7;Q14C86-3;Q14C86-5;Q14C86;H0Y4E7;H0Y7I9;C9IZ08;B4DGD8 Q14C86-4 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 LQELESCS(0.001)GLGS(0.972)T(0.026)S(0.001)DDTDVR;LQELESCSGLGS(0.89)T(0.068)S(0.041)DDT(0.001)DVR;LQELESCS(0.001)GLGS(0.764)T(0.186)S(0.046)DDT(0.002)DVR 192.46 3.70E-17 53232600 1798.71 1854.99 2522.19 1992.4 1696.21 1709.45 2070.79 2505.64 1455.5 2424.29 TRUE FALSE 1823.897489 2057.524081 1885.43194 1864.616382 1927.262519 2012.596956 2463.711592 2292.770242 1595.307278 1930.218367 0.944917695 1.065954048 0.976797223 0.966013179 0.998468646 1.042678378 1.276390088 1.187829461 0.82649057 1 10.91454835 -7.525735035 24.99687907 1.098502005 0.995318178 0.086262646 0.114916404 180.3780723 1578544.405 0.044062312 0.034326082 2.98E-08 7.525735035 -0.103183828 LQESTQTVQALQYSTVDGPLT(ph)AS(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 LQESTQTVQALQYSTVDGPLTASK 24 0 Q5VT25-2;A0A0A0MRJ0;Q5VT25-3;Q5VT25-4;Q5VT25-5;Q5VT25;Q5VT25-6 Q5VT25-2 CDC42BPA Serine/threonine-protein kinase MRCK alpha;Non-specific serine/threonine protein kinase 2 LQESTQT(0.001)VQALQY(0.399)S(0.43)T(0.43)VDGPLT(0.371)AS(0.371)K 58.366 0.0064408 24577000 1435.3 1030.4 1312.6 1105.9 1098 1045.1 835.45 972.81 1157.4 1350.3 TRUE FALSE 1455.398628 1142.902557 981.217896 1034.972524 1247.566189 1230.433811 993.9722762 890.1637184 1268.573441 1075.108119 1.353723038 1.063058251 0.912669041 0.962668317 1.160409979 1.144474485 0.924532388 0.827975999 1.179949643 1 10.07026604 -5.280307796 3.889862799 1.011528719 1.380508329 0.455925516 0.110484022 0.211085389 6.426862212 0.028999825 0.214640462 5.24E-06 5.280307796 0.36897961 LQGFIPCRIPSAS(ph)PQTQR ddPTM_K562_Paclitaxel_30min_R1 1 LQGFIPCRIPSASPQTQR 18 1 Q13233 Q13233 MAP3K1 Mitogen-activated protein kinase kinase kinase 1 1 LQGFIPCRIPS(0.039)AS(0.908)PQT(0.053)QR 87.554 0.0027732 15539000 871.56 834.62 953.56 894.81 848.48 896.02 723.02 872.69 1150.6 1139.3 TRUE FALSE 883.764529 925.7466341 712.8219845 837.4208916 964.0573409 1054.916566 860.2092706 798.5495373 1261.120271 907.1100346 0.974263866 1.020545026 0.785816447 0.923174543 1.06277883 1.16294223 0.9482965 0.880322681 1.390261625 1 9.825133754 -6.763754832 8.391898956 1.066424255 0.922509613 0.208760508 0.140771501 0.196827501 127.2975413 0.042678226 0.051379305 1.72E-07 6.763754832 -0.143914642 LQGTSSHSADTPEAS(ph)LDSGEGPSGMASQGCPSASR ddPTM_K562_Paclitaxel_30min_R1 1 LQGTSSHSADTPEASLDSGEGPSGMASQGCPSASR 35 0 Q9UER7-3;Q9UER7;Q9UER7-2;Q9UER7-5;Q9UER7-4 Q9UER7-3 DAXX Death domain-associated protein 6 1 LQGTSSHSADTPEAS(0.661)LDS(0.339)GEGPSGMASQGCPSASR 158.21 2.19E-47 17573000 313.01 313.45 610.63 379.22 516.17 435.43 393.34 538.01 464.7 613.13 TRUE FALSE 317.3931057 347.673531 456.4689043 354.8985265 586.4810928 512.6473968 467.9742116 492.3026923 509.3365113 488.1737694 0.650164195 0.712192159 0.93505414 0.726992208 1.201377726 1.050133024 0.958622197 1.008457896 1.043350838 1 8.931250968 -5.946959287 0.966014612 1.031115608 0.614457097 0.621020423 0.102969192 0.565540576 0.814874544 0.038470314 0.19798275 1.13E-06 5.946959287 -0.41665851 LQGTSSHSADTPEASLDS(ph)GEGPSGMASQGCPSASR ddPTM_K562_Paclitaxel_30min_R1 2 LQGTSSHSADTPEASLDSGEGPSGMASQGCPSASR 35 0 Q9UER7-3;Q9UER7;Q9UER7-2;Q9UER7-5;Q9UER7-4 Q9UER7-3 DAXX Death domain-associated protein 6 1 LQGTSSHSADTPEAS(0.241)LDS(0.757)GEGPS(0.003)GMASQGCPSASR;LQGTSSHSADTPEAS(0.316)LDS(0.678)GEGPS(0.005)GMASQGCPSASR 135.04 2.45E-26 38531000 2028.6 2230.63 3165.7 2718.3 1931.02 2081.63 2117.94 2894.6 2139.36 2780.7 TRUE FALSE 2057.006659 2474.177727 2366.479882 2543.960405 2194.057616 2450.777853 2519.808059 2648.685662 2344.855087 2213.991814 0.929094067 1.117518914 1.068874721 1.149037855 0.990996264 1.106949826 1.138128896 1.196339411 1.059107388 1 11.11243417 -7.493400774 24.4722395 1.115867534 1.059997146 0.07253368 0.075386233 1213.534802 1007463.402 0.025725119 0.02265023 3.21E-08 7.493400774 -0.055870388 LQHSTS(ph)ILR ddPTM_K562_Paclitaxel_30min_R1 1 LQHSTSILR 9 0 A0A3B3IRZ4;Q6DN90-3;A0A2R8Y695;A0A2R8Y7T6;Q6DN90 A0A3B3IRZ4 IQSEC1 IQ motif and SEC7 domain-containing protein 1 1 LQHS(0.023)T(0.095)S(0.882)ILR 94.363 0.014224 7349500 2091.1 1614.5 1873 1807.2 1639.6 1756.4 2407.6 2749.8 2565.5 3364.5 TRUE FALSE 2120.381852 1790.77657 1400.137985 1691.294281 1862.941279 2067.872879 2864.429531 2516.187326 2811.927738 2678.813053 0.791537823 0.668496283 0.522671033 0.631359579 0.695435345 0.771936241 1.069290568 0.939291872 1.049691666 1 11.38737819 -7.577583148 2.936860726 1.01039693 0.654314777 0.842111641 0.071826281 0.103242894 1.813678613 0.031319045 0.023923846 2.64E-08 7.577583148 -0.356082153 LQLEETMPS(ph)PYGRR ddPTM_K562_Paclitaxel_30min_R1 1 LQLEETMPSPYGRR 14 1 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 1 LQLEET(0.007)MPS(0.979)PY(0.014)GRR 107.69 0.00025504 0 1217.2 1104.1 1228.4 1227.7 1045.9 1113.1 1027.2 1315.3 1502.3 1456.2 TRUE FALSE 1234.244555 1224.649372 918.2752273 1148.960817 1188.369287 1310.492656 1222.105838 1203.557055 1646.602627 1159.425641 1.064531016 1.056255208 0.792008728 0.990974131 1.02496378 1.1302947 1.05406142 1.038063169 1.420188212 1 10.17919458 -7.45131363 1.079811745 1.154909985 0.970498154 0.240253244 0.128268723 0.738564614 1.777089534 0.076867651 0.058079435 3.54E-08 7.45131363 -0.184411831 LQLQGLDLS(ph)SR ddPTM_K562_Paclitaxel_30min_R1 3 LQLQGLDLSSR 11 0 P49454 P49454 CENPF Centromere protein F 1 LQLQGLDLS(0.935)S(0.065)R;LQLQGLDLS(0.962)S(0.038)R;LQLQGLDLS(0.987)S(0.013)R 156.08 0.00066718 28035100 6321.7 6383.9 6801.7 5500.3 5088 5253.3 6459.9 8055.7 6947.2 8547.1 TRUE FALSE 6410.223304 7080.915791 5084.526713 5147.535376 5781.071741 6184.898995 7685.632302 7371.318003 7614.509601 6805.196328 0.941960084 1.040516019 0.747153567 0.756412472 0.849508443 0.908849458 1.129377013 1.083189617 1.118925779 1 12.73242107 -7.669872225 4.842831367 1.089436297 0.865593487 0.588599136 0.08582571 0.159712934 6.384635104 0.037157488 0.028133412 2.14E-08 7.669872225 -0.22384281 LQPQEIS(ph)PPPTANLDR ddPTM_K562_Paclitaxel_30min_R1 1 LQPQEISPPPTANLDR 16 0 Q05397-5;Q05397;Q05397-7;E7ESA6;H0YBP1;Q05397-6;H0YBZ1;H0YB16;E9PEI4;B4DWJ1;Q05397-2 Q05397-5;Q05397-2 PTK2 Focal adhesion kinase 1 1 LQPQEIS(0.999)PPPT(0.001)ANLDR 92.8 0.008361 103210000 1559.4 1549.7 2040.3 1647.3 1514.3 1632.2 1444.1 1904.9 1157.2 2055.7 TRUE FALSE 1581.236411 1718.901487 1525.201031 1541.649551 1720.573297 1921.647753 1718.110436 1743.066855 1268.354231 1636.747212 0.966084683 1.050193625 0.931848865 0.941898382 1.051215047 1.174065084 1.049710318 1.064957889 0.774923715 1 10.67661581 -8.74027546 24.97385386 0.887461711 1.029628449 0.313183985 0.083682278 249.4724858 294384.5969 0.058707935 0.022139974 1.82E-09 8.74027546 0.142166738 LQPSSS(ph)PENSLDPFPPR ddPTM_K562_Paclitaxel_30min_R1 3 LQPSSSPENSLDPFPPR 17 0 H3BUF6;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 LQPSS(0.02)S(0.979)PENSLDPFPPR;LQPS(0.027)S(0.087)S(0.885)PENS(0.001)LDPFPPR;LQPS(0.241)S(0.241)S(0.518)PENS(0.001)LDPFPPR 291.68 2.76E-154 458160000 5375.01 5414.55 6814.35 5907.94 4709.41 4987.96 4741.88 6134.7 5855.12 6424.84 TRUE FALSE 5450.276723 6005.72888 5093.983064 5529.031171 5350.911373 5872.504672 5641.626976 5613.518943 6417.530437 5115.454081 1.065453161 1.174036319 0.995802715 1.080848559 1.04602862 1.147992843 1.10285947 1.097364741 1.254537786 1 12.32064659 -7.265403278 24.89664228 1.125530545 1.074288651 0.099262735 0.071583517 788.3574825 4951530.429 0.023857501 0.02186933 5.43E-08 7.265403278 -0.051241894 LQQELDDLTVDLDHQR ddPTM_K562_Paclitaxel_30min_R1 4 LQQELDDLTVDLDHQR 16 0 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 0 ;;; 312.38 3.63E-228 25945700 10474.4 10103.8 11999.1 11473.7 9117.6 9607.5 9305.5 11433.9 10634.5 12403.9 FALSE TRUE 10621.07392 11206.96705 8969.778802 10737.82824 10359.57148 11311.25523 11071.17005 10462.51883 11655.99124 9875.978371 1.075445239 1.134770312 0.908242046 1.08726729 1.048966603 1.145330093 1.121020078 1.059390618 1.180236611 1 13.26970796 -7.228862376 22.16728023 1.106146426 1.049686288 0.11002629 0.070725703 349.4250868 237767.8421 0.022777099 0.022773543 5.90E-08 7.228862376 -0.056460137 LQQGAGLES(ph)PQGQPEPGAAS(ph)PQR ddPTM_K562_Paclitaxel_30min_R1 3 LQQGAGLESPQGQPEPGAASPQR 23 0 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 2 LQQGAGLES(1)PQGQPEPGAAS(1)PQR;LQQGAGLES(1)PQGQPEPGAAS(1)PQR;LQQGAGLES(1)PQGQPEPGAAS(1)PQR 111.81 3.45E-05 64725000 3422.29 3035.53 4362.89 4117 2894.34 3361.97 3098.67 4364.8 2582.2 4157.85 TRUE FALSE 3470.212619 3366.959431 3261.42446 3852.954047 3288.59811 3958.168175 3686.626456 3993.982996 2830.231848 3310.477888 1.048251261 1.017061447 0.985182373 1.16386642 0.993390749 1.195648577 1.113623646 1.206467202 0.854931506 1 11.69282378 -6.234964084 24.84423212 1.087204787 1.016854671 0.056105646 0.102422701 1783.40499 1673531.594 0.026569511 0.046004994 5.82E-07 6.234964084 -0.070350115 LQQGAGLESPQGQPEPGAAS(ph)PQR ddPTM_K562_Paclitaxel_30min_R1 3 LQQGAGLESPQGQPEPGAASPQR 23 0 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 LQQGAGLESPQGQPEPGAAS(1)PQR;LQQGAGLESPQGQPEPGAAS(1)PQR;LQQGAGLESPQGQPEPGAAS(1)PQR 150.11 8.44E-19 448410000 9733.5 9351.8 12027.1 11228 9519.6 8680.9 9377.1 11158.8 7143.9 11946.1 TRUE FALSE 9869.79903 10372.86115 8990.709856 10507.88633 10816.33069 10220.33573 11156.35577 10210.79029 7830.103515 9511.478263 1.037672458 1.090562462 0.945248426 1.104758487 1.137187132 1.07452653 1.172936053 1.073522959 0.823226769 1 13.21545387 -8.712631436 11.62237263 0.911767679 1.081225789 0.482905787 0.069496362 0.507331154 119.6795419 0.047042561 0.017717108 1.94E-09 8.712631436 0.16945811 LQQGAGLESPQGQPEPGAAS(ph)PQRQQDLHLES(ph)PQRQPEYSPESPR ddPTM_K562_Paclitaxel_30min_R1 1 LQQGAGLESPQGQPEPGAASPQRQQDLHLESPQRQPEYSPESPR 44 2 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 2 LQQGAGLES(0.032)PQGQPEPGAAS(0.631)PQRQQDLHLES(0.44)PQRQPEY(0.29)S(0.303)PES(0.303)PR 43.951 0.0022801 88374000 683.83 764.06 1049.6 714.23 861.33 911.2 631.54 716.93 948.62 992.54 TRUE FALSE 693.4057298 847.4826547 784.6154987 668.4224846 978.6577284 1072.788526 751.3714181 656.0223216 1039.73919 790.2598032 0.877440213 1.072410176 0.99285766 0.845826248 1.238399985 1.357513721 0.950790379 0.830135 1.315692871 1 9.626183217 -6.758200436 24.99621721 1.110801743 0.959347928 0.199819787 0.164099077 168.7728097 1302474.692 0.051882524 0.064187506 1.75E-07 6.758200436 -0.151453814 LQQGAGLESPQGQPEPGAAS(ph)PQRQQDLHLESPQR ddPTM_K562_Paclitaxel_30min_R1 3 LQQGAGLESPQGQPEPGAASPQRQQDLHLESPQR 34 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 LQQGAGLES(0.001)PQGQPEPGAAS(0.961)PQRQQDLHLES(0.038)PQR;LQQGAGLES(0.005)PQGQPEPGAAS(0.909)PQRQQDLHLES(0.087)PQR;LQQGAGLES(0.045)PQGQPEPGAAS(0.951)PQRQQDLHLES(0.005)PQR 79.782 2.29E-06 1489436000 5821.9 5218.1 7463.2 6644.3 5858 5717.9 5527.5 7643.1 4683.7 7640.6 TRUE FALSE 5903.424562 5787.829804 5579.022856 6218.164337 6655.958777 6731.889282 6576.31427 6993.770948 5133.590312 6083.441526 0.970408697 0.951407157 0.917083337 1.022145822 1.094110751 1.106592256 1.081018736 1.149640531 0.843862851 1 12.570672 -6.440950566 4.65077199 1.058293207 0.94782247 0.229431954 0.079634992 0.29084136 11.17274168 0.022443034 0.033405707 3.62E-07 6.440950566 -0.110470737 LQQGAGLESPQGQPEPGAAS(ph)PQRQQDLHLESPQRQPEYSPESPR ddPTM_K562_Paclitaxel_30min_R1 1 LQQGAGLESPQGQPEPGAASPQRQQDLHLESPQRQPEYSPESPR 44 2 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 LQQGAGLES(0.001)PQGQPEPGAAS(0.71)PQRQQDLHLES(0.263)PQRQPEY(0.011)S(0.012)PES(0.003)PR 53.505 4.55E-05 157090000 274.78 359.15 370.48 247.61 192.8 303.85 275.28 370.1 569.86 442.55 TRUE FALSE 278.6277678 398.3632116 276.947742 231.7294029 219.0626241 357.7335312 327.5129429 338.6576949 624.5975992 352.3580671 0.790751777 1.130563619 0.785983827 0.657653179 0.62170458 1.015255686 0.929488987 0.96111804 1.772621823 1 8.460898434 -8.59015534 8.772145089 1.385245305 0.853318279 0.470655526 0.225354924 0.250916298 29.66103768 0.14962427 0.0561692 2.57E-09 8.59015534 -0.531927027 LQQGAGLESPQGQPEPGAASPQRQQDLHLESPQRQPEY(ph)S(ph)PESPR ddPTM_K562_Paclitaxel_30min_R1 1 LQQGAGLESPQGQPEPGAASPQRQQDLHLESPQRQPEYSPESPR 44 2 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 2 LQQGAGLES(0.009)PQGQPEPGAAS(0.33)PQRQQDLHLES(0.279)PQRQPEY(0.573)S(0.586)PES(0.223)PR 63.433 1.03E-06 131310000 1413.9 1546 1931.4 1269.5 1299.1 1359.1 1251.1 1719 1547.7 1694.3 TRUE FALSE 1433.698962 1714.797508 1443.794183 1188.079952 1476.059414 1600.117302 1488.489694 1572.96022 1696.3635 1349.00073 1.062785905 1.27116129 1.070269386 0.880711126 1.094187261 1.186150064 1.103401696 1.166018806 1.257496355 1 10.39767541 -7.017159998 24.46403357 1.149386603 1.073194543 0.090319951 0.106819691 1455.99867 2075733.808 0.036637055 0.037513604 9.61E-08 7.017159998 -0.076192059 LQQQAALSPTT(ph)APAVSSVSK ddPTM_K562_Paclitaxel_30min_R1 1 LQQQAALSPTTAPAVSSVSK 20 0 A0A0U1RRM1;Q8WXI9;A0A0U1RR30 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 LQQQAALS(0.253)PT(0.253)T(0.494)APAVSSVSK 164.99 3.69E-12 10354000 1476.6 1519.8 2239.4 1759.2 1114.7 1159.7 1108.1 1795.9 1145.4 1998.7 TRUE FALSE 1497.276956 1685.736904 1674.035773 1646.372786 1266.541012 1365.356512 1318.35619 1643.327085 1255.420788 1591.363843 0.940876571 1.059303258 1.051950364 1.034567169 0.795883995 0.857978845 0.828444228 1.032653276 0.788896137 1 10.63604801 -6.740605473 24.90881539 0.88153229 1.026524763 0.410050424 0.080798234 218.5794579 261330.2907 0.023128392 0.029825638 1.82E-07 6.740605473 0.144992472 LQQQHSEQPPLQPS(ph)PVMTR ddPTM_K562_Paclitaxel_30min_R1 5 LQQQHSEQPPLQPSPVMTR 19 0 A0A0A0MSK5;J3KN66;Q5JTV8-2;Q5JTV8;Q5JTV8-3;H0YDU3 A0A0A0MSK5;H0YDU3 TOR1AIP1 Torsin-1A-interacting protein 1 1 LQQQHSEQPPLQPS(0.797)PVMT(0.203)R;LQQQHSEQPPLQPS(0.654)PVMT(0.346)R;LQQQHSEQPPLQPS(0.862)PVMT(0.138)R;LQQQHSEQPPLQPS(0.916)PVMT(0.084)R;LQQQHSEQPPLQPS(0.845)PVMT(0.155)R 118.59 7.01E-05 864958000 4894.06 4780.21 6858.85 5930.16 5000.81 5163.56 4560.16 5461.72 4459.09 6194.83 TRUE FALSE 4962.591939 5302.129493 5127.248488 5549.82608 5682.004986 6079.244866 5425.426554 4997.712795 4887.405518 4932.320246 1.006137415 1.074976731 1.039520597 1.125195811 1.151994336 1.232532472 1.099974512 1.013257969 0.990893793 1 12.26805076 -8.278766363 4.591762524 0.999108049 1.108666552 0.395981946 0.058354017 0.228381121 12.93047143 0.036162547 0.017695616 5.26E-09 8.278766363 0.109558504 LQQQHSEQPPLQPS(ph)PVMTRR ddPTM_K562_Paclitaxel_30min_R1 5 LQQQHSEQPPLQPSPVMTRR 20 1 A0A0A0MSK5;J3KN66;Q5JTV8-2;Q5JTV8;Q5JTV8-3;H0YDU3 A0A0A0MSK5;H0YDU3 TOR1AIP1 Torsin-1A-interacting protein 1 1 LQQQHSEQPPLQPS(0.91)PVMT(0.09)RR;LQQQHSEQPPLQPS(0.998)PVMT(0.002)RR;LQQQHSEQPPLQPS(0.997)PVMT(0.003)RR;LQQQHSEQPPLQPS(0.603)PVMT(0.397)RR;LQQQHSEQPPLQPS(0.998)PVMT(0.002)RR 167.87 4.97E-13 209022000 5396.7 4690.74 6296.98 5341.65 4434.76 4540.79 4220.4 5301.91 6227.4 5337.51 TRUE FALSE 5472.27045 5202.890856 4707.229519 4999.060477 5038.849393 5346.035351 5021.198868 4851.479652 6825.569595 4249.722532 1.287677115 1.224289543 1.107655731 1.176326322 1.185689031 1.257972799 1.181535696 1.141599155 1.606121233 1 12.05315293 LQQQHSEQPPLQPSPVMT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 LQQQHSEQPPLQPSPVMTR 19 0 A0A0A0MSK5;J3KN66;Q5JTV8-2;Q5JTV8;Q5JTV8-3;H0YDU3 A0A0A0MSK5;H0YDU3 TOR1AIP1 Torsin-1A-interacting protein 1 1 LQQQHSEQPPLQPS(0.492)PVMT(0.508)R 95.344 0.00093053 65094000 2324.9 2060.5 2490.6 2233.1 2099.6 1907.2 1955.8 2275.5 1773.8 2592 TRUE FALSE 2357.455773 2285.472358 1861.817227 2089.878961 2385.601067 2245.415142 2326.90284 2082.182072 1944.181416 2063.748977 1.142317113 1.107437185 0.902152949 1.012661416 1.155955057 1.088027258 1.127512535 1.008931849 0.942062934 1 11.01105178 -8.489725138 7.022978697 0.972088277 1.071994391 0.272114929 0.071163818 0.293185805 49.90664137 0.044645893 0.020262542 3.24E-09 8.489725138 0.099906114 LQQQHSEQPPLQPSPVMT(ph)RR ddPTM_K562_Paclitaxel_30min_R1 1 LQQQHSEQPPLQPSPVMTRR 20 1 A0A0A0MSK5;J3KN66;Q5JTV8-2;Q5JTV8;Q5JTV8-3;H0YDU3 A0A0A0MSK5;H0YDU3 TOR1AIP1 Torsin-1A-interacting protein 1 1 LQQQHSEQPPLQPS(0.32)PVMT(0.68)RR 50.493 0.02359 9722300 1066.2 856.25 1031.8 1104.7 992.41 886.85 849.76 1035.5 1088.3 881.27 TRUE FALSE 1081.13009 949.7382707 771.3093289 1033.849486 1127.593044 1044.120396 1010.997524 947.5278116 1192.836078 701.6666903 1.540802926 1.353546183 1.099253163 1.473419646 1.607020911 1.488057521 1.44085153 1.350395886 1.700003854 1 9.454642066 -11.22030117 3.487790326 0.99916366 1.44037058 0.430166801 0.155122519 63825178.31 105693306.3 590014.0054 0.041496099 6.02E-12 11.22030117 0.44120692 LQS(ph)QRPS(ph)MAS(ph)ELMPS(ph)SR ddPTM_K562_Paclitaxel_30min_R1 1 LQSQRPSMASELMPSSR 17 1 K7ELM7;K7EQS4;K7EKF4;K7EJI2;Q9BZJ4-2;Q9BZJ4 K7ELM7 SLC25A39 Solute carrier family 25 member 39 4 LQS(1)QRPS(1)MAS(1)ELMPS(0.651)S(0.349)R 65.265 0.020056 0 61.076 69.195 119.09 0 0 0 150.7 0 0 0 TRUE FALSE 61.93125244 76.7499441 89.02425661 0 0 0 179.2945383 0 0 0 0 LQSFDS(ph)PER ddPTM_K562_Paclitaxel_30min_R1 6 LQSFDSPER 9 0 E9PGM9;P78332-2;P78332 E9PGM9 RBM6 RNA-binding protein 6 1 LQSFDS(1)PER;LQS(0.009)FDS(0.991)PER;LQSFDS(1)PER;LQSFDS(1)PER;LQSFDS(1)PER;LQSFDS(1)PER 152.96 9.05E-05 539247000 16248 15737.2 19921.7 17945.1 16486.3 14947.4 16267.8 19343.1 13288.9 20454.1 TRUE FALSE 16475.52213 17455.44072 14892.22045 16794.18161 18732.01318 17598.11152 19354.53013 17699.78292 14565.35822 16285.54319 1.011665496 1.071836568 0.914444196 1.031232511 1.150223419 1.080597147 1.188448546 1.086840194 0.894373497 1 13.99130422 -5.242116703 21.45234606 1.053305437 1.011665299 0.008480029 0.088170327 3455.636481 3836059.954 0.022962987 0.622097018 5.73E-06 5.242116703 -0.041640138 LQSIGTENTEENRR ddPTM_K562_Paclitaxel_30min_R1 1 LQSIGTENTEENRR 14 1 H3BQN4;J3KPS3;P04075;P04075-2;H3BMQ8;H3BUH7;H3BR04;H3BPS8 H3BQN4 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A 0 117.08 0.0028434 94083000 1135.5 1168.5 1296.3 1302.8 1265.6 1130.7 963.17 1282.2 1101.3 1093.1 FALSE TRUE 1151.400503 1296.080782 969.0330326 1219.244239 1437.996147 1331.213769 1145.926479 1173.269107 1207.084786 870.32562 1.322953705 1.489190657 1.113414348 1.400905835 1.652250737 1.529558292 1.316664077 1.348080626 1.386934681 1 9.765411456 -10.91014176 8.621506146 1 1.397938925 0.430616979 0.13642705 3.83E-10 0 0.140150253 0.033991429 1.23E-11 10.91014176 0.397938925 LQSMT(ph)VRQGSQVRLQVR ddPTM_K562_Paclitaxel_30min_R1 1 LQSMTVRQGSQVRLQVR 17 2 A0A0A0MRA3;A0A0A0MTS7;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13;Q8WZ42-12;Q8WZ42-6 A0A0A0MRA3 TTN Titin 1 LQS(0.152)MT(0.847)VRQGS(0.001)QVRLQVR 51.013 0.030297 0 234.59 420.81 300.84 324.89 293.96 234.89 368.53 513.45 221.25 271.65 TRUE FALSE 237.8749838 466.7554589 224.8892213 304.0530096 334.0023288 276.5444435 438.4566436 469.8292176 242.5020511 216.2875809 1.099808795 2.158031714 1.03976946 1.405781175 1.544251073 1.278596036 2.027192878 2.172243158 1.12120192 1 7.756807019 -7.724383331 24.99949703 1.677848481 1.442115922 0.010034848 0.44338303 525.2316555 354341.6392 0.163827773 0.126897138 1.89E-08 7.724383331 -0.235732559 LQT(ph)PNT(ph)FPK ddPTM_K562_Paclitaxel_30min_R1 1 LQTPNTFPK 9 0 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 2 LQT(1)PNT(1)FPK 82.171 0.028347 0 1244.8 1023.3 1870.8 1480.8 812.87 841 830.26 1365.9 1124.9 1520 TRUE FALSE 1262.231041 1135.027355 1398.493402 1385.828116 923.596656 990.1395418 987.7975008 1249.858269 1232.951671 1210.223166 1.042973789 0.937866161 1.155566545 1.145101296 0.763162268 0.818146248 0.816211033 1.032750244 1.018780425 1 10.24105739 -6.748444653 24.9992687 0.900712891 1.066996858 0.373434028 0.102618977 274.0262822 527169.8952 0.033239093 0.042639109 1.78E-07 6.748444653 0.166283967 LQTAQPEGSSS(ph)PPMFSFSDHSR ddPTM_K562_Paclitaxel_30min_R1 1 LQTAQPEGSSSPPMFSFSDHSR 22 0 Q8IY92-2;Q8IY92 Q8IY92-2 SLX4 Structure-specific endonuclease subunit SLX4 1 LQTAQPEGS(0.004)S(0.35)S(0.646)PPMFSFSDHSR 109.08 5.35E-05 12163000 1624.2 1465.7 1746.7 1761.8 1401.4 1633.1 1560.3 1587.6 1554.1 1666.4 TRUE FALSE 1646.943811 1625.730083 1305.723982 1648.806034 1592.294406 1922.707355 1856.35878 1452.723471 1703.378249 1326.786765 1.241302562 1.225313762 0.984124967 1.24270612 1.200113272 1.449145715 1.399138753 1.094918572 1.283837233 1 10.37372081 -5.30269996 6.874046828 1.218945699 1.241333218 0.000160474 0.144597768 2.791913362 389.8740793 0.037162773 0.157283738 4.98E-06 5.30269996 0.022387518 LQTTDNLLPMS(ph)PEEFDEVSR ddPTM_K562_Paclitaxel_30min_R1 1 LQTTDNLLPMSPEEFDEVSR 20 0 A0A669KB68;A0A669KB56;A0A669KBA4;A0A669KB53;P42224 A0A669KB68 STAT1 Signal transducer and activator of transcription 1-alpha/beta 1 LQTTDNLLPMS(1)PEEFDEVSR 121.35 8.47E-06 12964000 2642.3 2474.9 3075 2707.3 2974 2065.8 2521.7 3010.5 2762.8 3321.6 TRUE FALSE 2679.300352 2745.117952 2298.678219 2533.665895 3379.10915 2432.140625 3000.179411 2754.739234 3028.179285 2644.656097 1.01309972 1.037986737 0.8691785 0.958032274 1.277712121 0.919643438 1.13443083 1.041624746 1.14501817 1 11.36886442 LQY(ph)LLGSHAGS(ph)VST(ph)IHFNQR ddPTM_K562_Paclitaxel_30min_R1 1 LQYLLGSHAGSVSTIHFNQR 20 0 A6NGE4 A6NGE4 DCAF8L1 DDB1- and CUL4-associated factor 8-like protein 1 3 LQY(0.934)LLGS(0.069)HAGS(0.997)VS(0.24)T(0.76)IHFNQR 53.304 0.023587 176790000 454.69 287.28 283.46 203.34 407.43 299.91 341.64 390.53 249.69 399.91 TRUE FALSE 461.0570628 318.6462019 211.8970172 190.2986825 462.9288638 353.0948276 406.4644065 357.3520389 273.6738401 318.4081225 1.4480066 1.000747718 0.66548873 0.597656495 1.453885222 1.108937878 1.276551626 1.122308175 0.859506466 1 8.314733329 -6.76313976 24.99982749 1.148568238 0.914423983 0.133097316 0.259222011 92.25607617 1356398.182 0.082916856 0.09901114 1.73E-07 6.76313976 -0.234144255 LQYSEEPAGR ddPTM_K562_Paclitaxel_30min_R1 1 LQYSEEPAGR 10 0 F5H2D5;A0A087WVW6;Q9UHV5-2;Q9UHV5-3;Q9UHV5 F5H2D5 RAPGEFL1 Rap guanine nucleotide exchange factor-like 1 0 120.45 0.0056394 3268600 1251.4 1586.5 1816.3 1490.2 1371.6 1948.2 1492.8 1445.6 1364.3 1907.2 FALSE TRUE 1268.923461 1759.719435 1357.752601 1394.625242 1558.435141 2293.685916 1776.051007 1322.787257 1495.347111 1518.511593 0.835636334 1.158844913 0.89413384 0.918415933 1.026291237 1.51048298 1.1695999 0.871107776 0.984745271 1 10.56844221 -5.244333825 23.12811173 1.062215531 0.835635823 0.123682356 0.178445309 2923.405685 3952505.138 0.048382218 1.218859887 5.70E-06 5.244333825 -0.226579708 LRADSLDSS(ph)GLS(ph)SER ddPTM_K562_Paclitaxel_30min_R1 1 LRADSLDSSGLSSER 15 1 Q9BW11-3;Q9BW11-2;Q9BW11;Q9BW11-4 Q9BW11-3 MXD3 Max dimerization protein 3 2 LRADS(0.001)LDS(0.439)S(0.559)GLS(0.56)S(0.44)ER 84.753 0.029597 0 0 0 121.45 0 0 0 0 0 0 0 TRUE FALSE 0 0 90.78844543 0 0 0 0 0 0 0 0 LRCDS(ph)ADLR ddPTM_K562_Paclitaxel_30min_R1 1 LRCDSADLR 9 1 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;E9PK09;Q9NYF8-4 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 LRCDS(1)ADLR 75.739 0.028446 44957000 1521.7 1395.1 2151.4 1610.5 1225.9 1539.5 1323.3 1852.5 1054.2 1668.4 TRUE FALSE 1543.008495 1547.421736 1608.252462 1507.209738 1392.888335 1812.508709 1574.389267 1695.118562 1155.46062 1328.379164 1.161572341 1.164894616 1.210687811 1.13462314 1.048562317 1.364451324 1.185195695 1.27608036 0.869827419 1 10.37545128 -8.764076206 24.99998673 0.934913632 1.191553929 0.59986953 0.084388757 47.52510012 450545.9602 0.069767302 0.021195193 1.72E-09 8.764076206 0.256640297 LRDLEDSLAR ddPTM_K562_Paclitaxel_30min_R1 2 LRDLEDSLAR 10 1 P02545-6;P02545;P02545-3;P02545-5;P02545-4;Q3BDU5;P02545-2;Q5TCI8 P02545-6;Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C 0 ; 172.88 0.0016211 56879000 4684.7 4826.2 6395.9 5520.4 4629.5 4713.1 5037.4 6426.4 5098.9 6364.8 FALSE TRUE 4750.300254 5353.140837 4781.175942 5166.346252 5260.116278 5548.90211 5993.220353 5880.437208 5588.672127 5067.650266 0.937377286 1.056335887 0.943469989 1.01947569 1.03797934 1.094965481 1.18264285 1.160387339 1.102813303 1 12.30710125 -7.103672308 1.923100337 1.125472944 0.989359057 0.500746915 0.05568711 0.255260855 1.873579884 0.020655157 0.0211178 7.88E-08 7.103672308 -0.136113887 LREQGTESRSS(ph)T(ph)PLPTISSSAENTR ddPTM_K562_Paclitaxel_30min_R1 1 LREQGTESRSSTPLPTISSSAENTR 25 2 G5E972;P42167;H0YJH7;P42167-3;P42167-2;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 2 LREQGT(0.149)ES(0.149)RS(0.122)S(0.725)T(0.856)PLPTISSSAENTR 72.676 0.00039307 40425000 609.03 543.74 538.38 366.18 392.84 382.67 523.63 387.43 565.76 577.64 TRUE FALSE 617.558299 603.107372 402.4593104 342.6948538 446.3514588 450.5311515 622.986059 354.5154032 620.1037759 459.9166509 1.342761341 1.311340589 0.875070101 0.745123824 0.970505108 0.979593043 1.354562958 0.770825328 1.348295989 1 8.84522862 -5.744601471 23.26114428 0.998305015 1.327051838 0.301635271 0.195465462 127.4715223 176091.5115 0.049253423 0.129340178 1.80E-06 5.744601471 0.328746823 LREQGTESRSS(ph)TPLPTISSSAENTR ddPTM_K562_Paclitaxel_30min_R1 1 LREQGTESRSSTPLPTISSSAENTR 25 2 G5E972;P42167;H0YJH7;P42167-3;P42167-2;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 LREQGT(0.061)ES(0.061)RS(0.061)S(0.756)T(0.061)PLPTISSSAENTR 72.676 0.00024608 37492000 492.5 701.31 665.94 615.67 748.05 701.63 482.55 627.77 456.73 563.97 TRUE FALSE 499.3965195 777.8813975 497.8152108 576.1836818 849.9470746 826.0542291 574.1113434 574.4370201 500.6009572 449.0326044 1.112160931 1.732349477 1.108639341 1.283166692 1.892840445 1.839630844 1.278551575 1.27927686 1.114843226 1 8.810676393 -10.60645524 9.193519827 1.000009107 1.421730489 0.146781303 0.290017549 0 0 0.293631751 0.07121616 2.47E-11 10.60645524 0.421721382 LREVMESAVGNSSGSGQNEES(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 LREVMESAVGNSSGSGQNEESPR 23 1 Q9NVF7 Q9NVF7 FBXO28 F-box only protein 28 1 LREVMESAVGNS(0.048)S(0.004)GS(0.012)GQNEES(0.936)PR;LREVMESAVGNSS(0.003)GS(0.024)GQNEES(0.973)PR 106.44 2.66E-05 19582500 760.29 974.06 1106.01 1076.33 1020.15 802.21 844.64 877.04 627.31 1104.84 TRUE FALSE 770.9364057 1080.411165 826.7840965 1007.299011 1159.111701 944.4706799 1004.906031 802.5299777 687.5659284 879.6730015 0.876389754 1.228196345 0.93987663 1.145083468 1.317662017 1.073661097 1.142363161 0.912304886 0.781615358 1 9.780823524 -8.319191457 5.319993745 0.8799115 1.110568181 0.341835017 0.129955845 0.228178404 13.82610411 0.071338995 0.033656483 4.80E-09 8.319191457 0.230656681 LRGAVAAEGAS(ph)DTEREEPTESQGLAAR ddPTM_K562_Paclitaxel_30min_R1 1 LRGAVAAEGASDTEREEPTESQGLAAR 27 2 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 LRGAVAAEGAS(0.86)DT(0.14)EREEPTESQGLAAR 57.147 0.0021359 108490000 532.33 478.46 586.87 465.4 409.68 328.62 404.64 376.97 427.5 661.75 TRUE FALSE 539.7842624 530.6998808 438.7074102 435.5513271 465.4853519 386.8961429 481.4183276 344.9440455 468.5632851 526.8849868 1.024482147 1.007240468 0.832643596 0.826653516 0.883466722 0.734308535 0.913706672 0.65468566 0.889308477 1 9.041344261 -5.753153777 5.600237123 0.828662427 1.019246351 0.363817646 0.090825662 0.142325731 14.40352282 0.021877306 0.054350501 1.77E-06 5.753153777 0.190583923 LRGTQEVAPPTPLTPT(ph)SHTANTSPRPVSGMER ddPTM_K562_Paclitaxel_30min_R1 1 LRGTQEVAPPTPLTPTSHTANTSPRPVSGMER 32 2 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 LRGTQEVAPPTPLT(0.009)PT(0.196)S(0.196)HT(0.196)ANT(0.196)S(0.196)PRPVS(0.008)GMER 49.101 0.0028359 31032000 1110.1 1128.6 1564.7 1351.6 1073.1 1373.9 1107.4 1693.8 1464.6 1495 TRUE FALSE 1125.644825 1251.824365 1169.672133 1264.914426 1219.274388 1617.541874 1317.523369 1549.901118 1605.281374 1190.318179 0.945667171 1.051672054 0.982655019 1.062669165 1.024326444 1.358915543 1.106866544 1.302089764 1.348615355 1 10.21713155 -7.21506087 13.13089832 1.234888524 1.016514055 0.489786693 0.106765064 1.794505218 507.1884481 0.033311014 0.033297795 6.09E-08 7.21506087 -0.218374468 LRGTQEVAPPTPLTPTS(ph)HTANTSPRPVSGMER ddPTM_K562_Paclitaxel_30min_R1 2 LRGTQEVAPPTPLTPTSHTANTSPRPVSGMER 32 2 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 LRGTQEVAPPTPLT(0.003)PT(0.161)S(0.589)HT(0.021)ANT(0.095)S(0.095)PRPVS(0.035)GMER;LRGTQEVAPPTPLT(0.032)PT(0.152)S(0.181)HT(0.181)ANT(0.152)S(0.152)PRPVS(0.152)GMER 77.51 1.23E-05 113433000 1630.01 1361.02 2117.18 1755.08 1657.34 1640.98 1656.36 1906.84 1438.77 2051.63 TRUE FALSE 1652.835169 1509.620766 1582.671724 1642.517024 1883.097767 1931.984762 1970.645663 1744.84204 1576.970287 1633.50668 1.011832513 0.92415953 0.96887986 1.005515952 1.152794654 1.182722291 1.206389718 1.068157273 0.965389555 1 10.67375664 -6.611377062 4.841267384 1.108737969 0.967120406 0.37843745 0.074150869 0.211165243 8.580795045 0.023686113 0.030971267 2.45E-07 6.611377062 -0.141617563 LRGTQEVAPPTPLTPTSHTANT(ph)SPRPVSGMER ddPTM_K562_Paclitaxel_30min_R1 1 LRGTQEVAPPTPLTPTSHTANTSPRPVSGMER 32 2 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 LRGTQEVAPPTPLT(0.001)PT(0.009)S(0.037)HT(0.122)ANT(0.412)S(0.412)PRPVS(0.008)GMER 64.16 0.00014535 77605000 1062.5 1100.6 975.98 1256.6 971.26 919.71 810.86 1127 556.71 1074.2 TRUE FALSE 1077.378278 1220.76723 729.5817782 1176.0073 1103.562056 1082.807655 964.716452 1031.254315 610.1844829 855.2774504 1.259682782 1.427334755 0.853035209 1.375000942 1.290297149 1.266030871 1.12795731 1.205754127 0.71343455 1 9.740248693 -8.743196533 22.57719463 0.856717806 1.225164823 0.455991283 0.161181174 57.78365784 71514.43937 0.106175268 0.039877475 1.81E-09 8.743196533 0.368447017 LRGTQEVAPPTPLTPTSHTANTSPRPVS(ph)GMER ddPTM_K562_Paclitaxel_30min_R1 1 LRGTQEVAPPTPLTPTSHTANTSPRPVSGMER 32 2 P48730-2;H7BYT1;P48730 P48730-2 CSNK1D Casein kinase I isoform delta 1 LRGTQEVAPPTPLT(0.001)PT(0.08)S(0.067)HT(0.067)ANT(0.17)S(0.17)PRPVS(0.445)GMER 68.565 8.26E-05 182430000 1197 1014.2 1600 1409.9 1348.9 1271.4 1148.4 1280.7 1156 1326.4 TRUE FALSE 1213.761693 1124.933786 1196.060211 1319.475324 1532.643017 1496.864939 1366.302905 1171.896541 1267.038965 1056.078952 1.149309614 1.065198567 1.132548101 1.249409736 1.45125799 1.417379767 1.29375072 1.109667548 1.199757805 1 10.04450198 -6.24606331 4.325498782 1.268970044 1.107303275 0.166426463 0.127362884 0.322876233 15.24692043 0.037812249 0.064052399 5.67E-07 6.24606331 -0.161666769 LRHPT(ph)PTMLSIQK ddPTM_K562_Paclitaxel_30min_R1 2 LRHPTPTMLSIQK 13 1 O14776;O14776-2;G3V220 O14776 TCERG1 Transcription elongation regulator 1 1 LRHPT(1)PTMLSIQK;LRHPT(0.999)PT(0.001)MLSIQK 135.55 0.00091308 41177000 4245.5 3642.7 5687.3 4768.5 3289.8 3506.4 3793.3 5829 3358 7534.4 TRUE FALSE 4304.950098 4040.422305 4251.470775 4462.669753 3737.926457 4128.210808 4513.058873 5333.790067 3680.550904 5998.885144 0.717625024 0.673528865 0.708710147 0.743916519 0.623103521 0.688163002 0.752316266 0.88913022 0.613539152 1 12.55047869 -15 0.23013277 2.54320431 0.682851926 0.57638282 0.073705011 113.8007426 1.139313912 81.68487561 0.126075496 1.00E-15 15 -1.860352384 LRIMS(ph)PMRTGNTY(ph)S(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 LRIMSPMRTGNTYSR 15 2 Q03164-2;Q03164;Q03164-3 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 3 LRIMS(0.996)PMRT(0.012)GNT(0.011)Y(0.993)S(0.988)R 76.82 0.024986 52806000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 LRLDTGS(ph)PEPETR ddPTM_K562_Paclitaxel_30min_R1 1 LRLDTGSPEPETR 13 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 LRLDT(0.041)GS(0.958)PEPET(0.001)R 123.68 0.0034047 51015000 1291.1 1645.3 1634.8 1444.6 1341.9 1767.8 1100.6 1781.9 1310.6 1782.6 TRUE FALSE 1309.179383 1824.939418 1222.074521 1351.949822 1524.689499 2081.294509 1309.433104 1630.516473 1436.488986 1419.305142 0.922408681 1.285797793 0.861037197 0.952543454 1.07425067 1.466417931 0.922587445 1.148813194 1.012107223 1 10.47096908 -4.984445051 17.58269925 1.082486212 0.621928963 0.070322173 0.172178929 28558305.89 654851471.8 0.042687998 340371359.3 1.04E-05 4.984445051 -0.46055725 LRLDTGSPEPET(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 LRLDTGSPEPETR 13 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 LRLDT(0.01)GS(0.031)PEPET(0.959)R 115.04 0.013825 44267000 1051.7 998.76 1519.7 1220.2 1027.3 1175.7 952.18 1035.2 1276.5 1307.1 TRUE FALSE 1066.427045 1107.807994 1136.03294 1141.941833 1167.235652 1384.193887 1132.851184 947.2532985 1399.113529 1040.712303 1.024708791 1.064470932 1.091591727 1.097269467 1.1215738 1.330044705 1.088534441 0.91019708 1.344380695 1 10.02335559 -5.848585041 1.301811172 1.131981879 1.026210722 0.072008709 0.124019824 1.7704703 4.986589263 0.039457563 0.190739734 1.42E-06 5.848585041 -0.105771157 LRLS(ph)PSPT(ph)SQR ddPTM_K562_Paclitaxel_30min_R1 1 LRLSPSPTSQR 11 1 P02545-6;P02545;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;Q3BDU5;P02545-2;Q5TCI8 P02545-6;Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C 2 LRLS(0.824)PS(0.177)PT(0.918)S(0.081)QR 127.3 0.012637 490000000 4914.3 5159.1 6282.7 5019.4 4522.2 4486 4651.5 4335.6 4890.4 5234.1 TRUE FALSE 4983.115362 5722.387985 4696.554682 4697.47815 5138.200201 5281.529113 5534.097843 3967.263718 5360.144771 4167.387547 1.19574081 1.373135548 1.126978144 1.127199738 1.232954733 1.267347722 1.327953731 0.951978589 1.286212216 1 12.02492755 -14.9999999 0.170643463 0.162790322 1.258281971 0.239650756 0.113807993 191.8690774 1.811254211 54.03702377 0.405625558 1.00E-15 14.9999999 1.095491649 LRPISDDSES(ph)IEESDTR ddPTM_K562_Paclitaxel_30min_R1 1 LRPISDDSESIEESDTR 17 1 Q09GN1;Q71F23-3;Q71F23;D6R9S4 Q09GN1 MLF1IP;CENPU Centromere protein U 1 LRPISDDS(0.221)ES(0.752)IEES(0.028)DTR 69.03 0.024057 7935700 683.12 583.04 769.25 549.47 540.02 557.24 400.71 712.96 503.52 801.7 TRUE FALSE 692.6857876 646.6982789 575.0433235 514.2294535 613.5798666 656.05869 476.7426307 652.3895978 551.8853458 638.3130999 1.085181845 1.013136467 0.900879715 0.805606925 0.961252192 1.027800761 0.74687897 1.022052654 0.864599749 1 9.318120446 -5.583614734 3.355944384 0.912682285 1.075462313 0.283653728 0.087720198 0.285803948 6.261471893 0.022204159 0.079969809 2.61E-06 5.583614734 0.162780028 LRPQSAQSSFPPS(ph)PGPSPDVQLATLAQR ddPTM_K562_Paclitaxel_30min_R1 1 LRPQSAQSSFPPSPGPSPDVQLATLAQR 28 1 Q9Y679-3;Q9Y679 Q9Y679-3 AUP1 Ancient ubiquitous protein 1 1 LRPQSAQSSFPPS(1)PGPSPDVQLATLAQR 94.968 7.01E-09 0 209.72 326.6 280.65 220.16 220.02 190.5 321.64 460.96 353.66 397.62 TRUE FALSE 212.656727 362.2592925 209.7964365 206.039923 249.990449 224.2825002 382.6695109 421.7985708 387.6306232 316.5848257 0.671721162 1.144272445 0.662686331 0.65082059 0.789647604 0.708443621 1.208742428 1.332339823 1.224413148 1 8.306448297 -7.767887759 24.90881426 1.219068971 0.778645544 0.635591078 0.155212016 92.62246184 357777.765 0.064215585 0.044463905 1.71E-08 7.767887759 -0.440423427 LRS(ph)PPEALVQGR ddPTM_K562_Paclitaxel_30min_R1 1 LRSPPEALVQGR 12 1 Q9UHB6;Q9UHB6-4;F8VRN8 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 LRS(1)PPEALVQGR 88.155 0.014468 46848000 1502.4 1504.2 2317 1794.2 1504.3 1546.5 1320.8 1778.9 1513.2 2051.7 TRUE FALSE 1523.438235 1668.433643 1732.044694 1679.128043 1709.211128 1820.750061 1571.414905 1627.771341 1658.549621 1633.562414 0.932586489 1.021346738 1.060286818 1.027893412 1.046309044 1.114588611 0.961955841 0.996454943 1.015296145 1 10.67380586 -11.0107431 12.11449977 1 1.022323221 0.012123097 0.047934212 0 0 0.047682684 0.01156475 9.76E-12 11.0107431 0.022323221 LRSFS(ph)MQDLR ddPTM_K562_Paclitaxel_30min_R1 1 LRSFSMQDLR 10 1 Q9H6H4;E5RGS2 Q9H6H4 REEP4 Receptor expression-enhancing protein 4;Receptor expression-enhancing protein 1 LRS(0.182)FS(0.818)MQDLR 104.94 0.020291 19177000 1283.9 1871.1 1994 1539.6 1300.1 1312.4 1762.4 2003.7 1170 2442.4 TRUE FALSE 1301.878561 2075.393026 1490.590039 1440.856947 1477.195631 1545.135713 2096.8062 1833.473178 1282.383728 1944.637539 0.669471063 1.067239001 0.766513043 0.740938565 0.759625175 0.794562319 1.078250397 0.942835434 0.659446144 1 10.92528556 LRT(ph)STSDLSRGEIGDPQTENPSTR ddPTM_K562_Paclitaxel_30min_R1 1 LRTSTSDLSRGEIGDPQTENPSTR 24 2 Q5T5U3;A0A087WW76;A0A452Q6Z5 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 LRT(0.232)S(0.232)T(0.232)S(0.232)DLS(0.07)RGEIGDPQTENPSTR 69.27 0.013479 44954000 1118.4 1064.9 1292.4 1101.4 1030.7 762.9 891.88 813.56 1751.5 1215.2 TRUE FALSE 1134.061051 1181.169383 966.1176358 1030.761134 1171.09879 898.1896034 1061.109574 744.4429999 1919.739401 967.541573 1.17210576 1.220794451 0.998528294 1.065340408 1.210386016 0.928321458 1.096706957 0.769417068 1.984141513 1 9.918179842 -8.744074554 24.99993504 1.492071562 1.063496009 0.31613161 0.255434038 229.9684197 331085.7093 0.158701362 0.059675815 1.80E-09 8.744074554 -0.428575553 LRTS(ph)TSDLSR ddPTM_K562_Paclitaxel_30min_R1 1 LRTSTSDLSR 10 1 Q5T5U3;A0A087WW76;A0A452Q6Z5 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 LRT(0.008)S(0.84)T(0.137)S(0.015)DLSR 84.734 0.019346 16517000 483.17 534.14 675.63 627.86 499.29 457.67 499.02 690.25 542.35 632.05 TRUE FALSE 489.9358707 592.4592115 505.0588504 587.5918698 567.301751 538.8313485 593.7064399 631.6089541 594.4451408 503.2378631 0.973567187 1.177294586 1.003618542 1.167622536 1.127303394 1.07072895 1.179772993 1.255090287 1.181240889 1 8.975096663 -3.298569137 0.509346282 1.153237478 1.38E-17 0.195218845 0.081524685 45.70536357 1.791027943 0.044010381 48.06788198 0.000502841 3.298569137 -1.153237478 LRVEFPR ddPTM_K562_Paclitaxel_30min_R1 1 LRVEFPR 7 1 Q13242;S4R3G0;J3KTL2;Q07955;Q07955-3;Q07955-2 Q13242;J3KTL2 SRSF9;SRSF1 Serine/arginine-rich splicing factor 9;Serine/arginine-rich splicing factor 1 0 84.916 0.026647 0 2086.1 2264.4 2940 2333 1804.4 2181.7 3006.2 2992.8 2814.7 3776.2 FALSE TRUE 2115.311836 2511.63485 2197.760639 2183.371822 2050.189829 2568.593862 3576.610757 2738.54296 3085.064511 3006.608367 0.703554164 0.835371469 0.730976692 0.726190962 0.68189454 0.854316076 1.189583185 0.910841262 1.026094567 1 11.55392124 -7.54549153 7.878948519 1.024624067 0.742911337 0.779358803 0.074186587 0.086548086 23.30527187 0.027420691 0.021470431 2.85E-08 7.54549153 -0.28171273 LRVQS(ph)PEPPAPER ddPTM_K562_Paclitaxel_30min_R1 4 LRVQSPEPPAPER 13 1 A0A0G2JMS7;A0A0G2JNZ2;A0A0G2JPP5;A0A669KB89;Q14160-2;Q14160;Q14160-3;H0YCG0 A0A0G2JMS7 SCRIB Protein scribble homolog 1 LRVQS(1)PEPPAPER;LRVQS(1)PEPPAPER;LRVQS(1)PEPPAPER;LRVQS(1)PEPPAPER 124.04 0.00078161 369838000 2571.35 2353.53 3193.64 2814.92 2372.56 2100.84 2274.11 2957.12 2782.3 2836.88 TRUE FALSE 2607.356833 2610.496365 2387.366084 2634.38363 2695.74284 2473.394477 2705.610501 2705.894198 3049.552347 2258.722299 1.154350331 1.15574029 1.056954228 1.166315856 1.193481306 1.095041421 1.197849998 1.197975599 1.350122743 1 11.14129119 -7.872729964 8.22767741 1.203914739 1.138182244 0.058180793 0.087108839 0.556412579 38.20218104 0.034880036 0.023493228 1.34E-08 7.872729964 -0.065732495 LS(ph)HPNIDCGKGILQ ddPTM_K562_Paclitaxel_30min_R1 1 LSHPNIDCGKGILQ 14 1 D6REY7 D6REY7 CAMK4 1 LS(1)HPNIDCGKGILQ 95.401 0.0071452 6506400 133.21 167.23 193.4 135.87 59.071 142.62 0 125.38 154.11 161.69 TRUE FALSE 135.075351 185.4887369 144.5737781 127.1559063 67.11747028 167.9116545 0 114.7281864 168.9129541 128.7374892 1.049230894 1.440829226 1.123012255 0.987714667 0.5213514 1.30429493 0 0.891179307 1.31207277 1 7.008288427 -6.316377595 2.818223942 0.812062711 1.242751388 0.158673995 0.37023433 0.448109899 7.022016725 0.108400632 0.183617323 4.83E-07 6.316377595 0.430688677 LS(ph)LMY(ph)S(ph)ITK ddPTM_K562_Paclitaxel_30min_R1 1 LSLMYSITK 9 0 Q5TAH2 Q5TAH2 SLC9C2 Sodium/hydrogen exchanger 11 3 LS(1)LMY(0.999)S(0.999)IT(0.002)K 69.812 0.020821 0 152 69.892 60.574 134.68 161.72 148.36 114.39 0 76.372 78.556 TRUE FALSE 154.128469 77.52304492 45.28134453 126.0422276 183.7490019 174.6695629 136.0949053 0 83.70787184 62.54624408 2.464232205 1.239451642 0.723965846 2.015184596 2.93781033 2.792646713 2.175908519 0 1.338335708 1 5.966851348 -8.243335411 24.70262267 0.751875862 2.029102328 0.407642799 0.701254742 743.8453917 1014969.43 0.369039787 0.212508292 5.71E-09 8.243335411 1.277226467 LS(ph)LTSGLIGILTPS(ph)SS(ph)S(ph)SSQLAPNGAKCIPVR ddPTM_K562_Paclitaxel_30min_R1 1 LSLTSGLIGILTPSSSSSSQLAPNGAKCIPVR 32 1 F5H3X8;E9PFI7;Q8N3A8-2;Q8N3A8 F5H3X8 PARP8 Poly [ADP-ribose] polymerase 8 4 LS(0.331)LT(0.331)S(0.331)GLIGILT(0.164)PS(0.605)S(0.605)S(0.621)S(0.742)S(0.135)S(0.135)QLAPNGAKCIPVR 45.596 0.0087708 35181000 1143 898.14 1087.9 1409.4 1297.9 1152.7 868.73 823.55 1223.7 885.12 TRUE FALSE 1159.005526 996.2019625 813.24619 1319.007392 1474.695954 1357.11516 1033.566982 753.5842871 1341.241853 704.7320581 1.644604518 1.413589677 1.153979276 1.871643807 2.092562608 1.92571793 1.466609856 1.069320288 1.90319404 1 9.460931033 -10.5319209 0.556159904 0.906962232 1.626516258 0.237197059 0.325442164 17.6936037 4.457319941 3.626466525 0.156470235 2.94E-11 10.5319209 0.719554026 LS(ph)PEPGREGVR ddPTM_K562_Paclitaxel_30min_R1 1 LSPEPGREGVR 11 1 Q9NWK9-2;Q9NWK9 Q9NWK9-2 ZNHIT6 Box C/D snoRNA protein 1 1 LS(1)PEPGREGVR 103.55 0.022426 22662000 1697.1 1536.9 2257.3 2015.4 1664.1 1503.1 1728 2017.7 1142.8 2497.3 TRUE FALSE 1720.864636 1704.703939 1687.416697 1886.141265 1890.778593 1769.65368 2055.878979 1846.283791 1252.571046 1988.348889 0.865474186 0.857346489 0.848652219 0.948596735 0.950928986 0.890011652 1.033962898 0.928551222 0.629955363 1 10.95735521 -6.24374908 23.44897438 0.914561473 0.857176507 0.055218875 0.102945631 1218.601748 1615281.927 0.02809283 0.048485565 5.70E-07 6.24374908 -0.057384966 LS(ph)PEVAPPAHR ddPTM_K562_Paclitaxel_30min_R1 1 LSPEVAPPAHR 11 0 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 LS(1)PEVAPPAHR 77.279 0.030708 14017000 3783.9 3994.1 5671.8 4554.4 3600.3 3662.2 3607 4625.6 2768.6 4835.9 TRUE FALSE 3836.886274 4430.189345 4239.883942 4262.301169 4090.721814 4311.63975 4291.40942 4232.626408 3034.5364 3850.340926 0.996505595 1.150596643 1.101171045 1.106993186 1.062431066 1.119807267 1.114553101 1.099286138 0.788121483 1 11.91077048 -8.741850763 24.99594912 0.894060789 1.096986193 0.629542271 0.061288742 114.9175355 146640.9805 0.037758394 0.014227369 1.81E-09 8.741850763 0.202925404 LS(ph)PGSGGPEAQTAGPVTPASISGR ddPTM_K562_Paclitaxel_30min_R1 1 LSPGSGGPEAQTAGPVTPASISGR 24 0 O95613-2;O95613 O95613-2 PCNT Pericentrin 1 LS(0.778)PGS(0.107)GGPEAQT(0.114)AGPVT(0.001)PAS(0.001)ISGR 52.91 0.027774 7888800 398.65 672.2 503.35 566.8 526.41 538.45 269.32 553.46 357.9 495.68 TRUE FALSE 404.2323299 745.5930692 376.2730671 530.4479849 598.1159542 633.9365473 320.4220641 506.4401184 392.2778941 394.6601439 1.024254251 1.889202851 0.953410353 1.344062716 1.515521553 1.606284691 0.811893648 1.283230968 0.993963794 1 8.624467021 -7.759133372 24.9994774 1.045874696 1.395473021 0.297787489 0.274658488 80.90434073 877099.0405 0.104479391 0.076973499 1.74E-08 7.759133372 0.349598325 LS(ph)PGSYPTVIQQQNATSQR ddPTM_K562_Paclitaxel_30min_R1 2 LSPGSYPTVIQQQNATSQR 19 0 Q13469-3;Q13469-4;Q13469-2;Q13469;Q13469-5 Q13469-3 NFATC2 "Nuclear factor of activated T-cells, cytoplasmic 2" 1 LS(0.999)PGS(0.001)YPTVIQQQNATSQR;LS(0.999)PGS(0.001)YPTVIQQQNATSQR 261.76 3.56E-101 65736000 1510.37 1415.25 1721.2 1636.01 1468.43 1389.28 1473.7 2101.17 1186.43 2371.6 TRUE FALSE 1531.51984 1569.771781 1286.661772 1531.083641 1668.455027 1635.649302 1753.326882 1922.662493 1300.391903 1888.266618 0.811071819 0.83132952 0.681398358 0.810840814 0.883590808 0.866217348 0.928537774 1.018215582 0.688669646 1 10.88284677 -6.72570179 3.282746163 0.900291279 0.775803081 0.27621221 0.091695661 0.320407395 7.109621717 0.028055092 0.035610788 1.88E-07 6.72570179 -0.124488198 LS(ph)PPAGLFTSAR ddPTM_K562_Paclitaxel_30min_R1 1 LSPPAGLFTSAR 12 0 K7EK35;P42229;P42229-2 K7EK35 STAT5A Signal transducer and activator of transcription;Signal transducer and activator of transcription 5A 1 LS(1)PPAGLFTSAR 92.247 0.016185 32139000 1297.2 1681.4 2117.2 1216.2 1576 1053.6 1495.8 1691.4 1081.6 2228.9 TRUE FALSE 1315.364802 1864.980938 1582.686675 1138.198376 1790.677882 1240.441167 1779.620241 1547.705013 1185.492513 1774.648957 0.74119718 1.050901324 0.891830843 0.641365365 1.009032167 0.698978332 1.002801278 0.872118966 0.66801522 1 10.79331796 -5.629743736 0.004945154 1.70037996 2.44E-07 0.014648825 0.148715544 290600.5432 252.955016 42117.13897 44887.92182 2.35E-06 5.629743736 -1.700379716 LS(ph)S(ph)HLKTLS(ph)QGS(ph)Y(ph)LYLK ddPTM_K562_Paclitaxel_30min_R1 1 LSSHLKTLSQGSYLYLK 17 1 Q9HCD6;Q9HCD6-2;J3KRP9;Q9HCD6-3;Q9HCD6-4 Q9HCD6 TANC2 Protein TANC2 5 LS(0.996)S(0.996)HLKT(0.082)LS(0.941)QGS(0.941)Y(0.849)LY(0.196)LK 40.801 0.029615 35000000 0 69.775 190.41 280.16 213.27 240.36 140.87 133.05 0 287.29 TRUE FALSE 0 77.39327046 142.3386405 262.1917915 242.3209847 282.9844712 167.5993471 121.746572 0 228.7401403 0 0.338345821 0.622272245 1.14624303 1.059372371 1.237143908 0.732706323 0.532248393 0 1 7.837565748 -5.655638983 2.245465966 0.821374069 0.027997943 0.374884133 0.339318404 0.389029308 3.613478916 0.101920788 0.442204638 2.21E-06 5.655638983 -0.793376126 LS(ph)SPERQR ddPTM_K562_Paclitaxel_30min_R1 1 LSSPERQR 8 1 Q8TDZ2-3;Q8TDZ2-2;Q8TDZ2;Q8TDZ2-4 Q8TDZ2-3 MICAL1 Protein-methionine sulfoxide oxidase MICAL1 1 LS(0.704)S(0.296)PERQR 82.831 0.030488 0 1101.7 1242.8 1649.6 1383.6 1123.4 1198.3 1098.2 1334.1 1217.8 1375.6 TRUE FALSE 1117.127199 1378.493107 1233.138078 1294.862089 1276.426099 1410.80168 1306.577717 1220.759878 1334.775131 1095.251965 1.019972787 1.258608203 1.125894422 1.182250414 1.165417767 1.288106961 1.192947156 1.11459273 1.218692295 1 10.09704709 -11.0482382 4.003230801 0.999973398 1.177272525 0.341742575 0.072345038 50823347.06 129072032.9 20573.8006 0.017136817 8.95E-12 11.0482382 0.177299127 LS(ph)SPVLHR ddPTM_K562_Paclitaxel_30min_R1 4 LSSPVLHR 8 0 Q16643;Q16643-2;Q16643-3;D6RCR4;D6R9W4 Q16643 DBN1 Drebrin 1 LS(0.649)S(0.351)PVLHR;LS(0.541)S(0.459)PVLHR;LS(0.5)S(0.5)PVLHR;LS(0.5)S(0.5)PVLHR 120.31 0.003068 1020974000 16822 16394.3 22044.5 18817.1 15196 14694.8 14436.7 16837.6 15953.8 19373.6 TRUE FALSE 17057.5599 18184.28512 16479.09333 17610.25543 17265.95247 17300.71645 17175.98846 15407.14078 17486.23377 15425.24969 1.105820667 1.17886488 1.06831939 1.14165124 1.119330502 1.121584208 1.113498245 0.998826022 1.133611068 1 13.91300622 -9.133425465 0.351763172 0.989457944 1.136575915 0.403194263 0.043251764 1.744628078 0.561306889 0.087758546 0.043110577 7.35E-10 9.133425465 0.147117972 LS(ph)SSWESLQPEPSHPY ddPTM_K562_Paclitaxel_30min_R1 1 LSSSWESLQPEPSHPY 16 0 P11277 P11277 SPTB "Spectrin beta chain, erythrocytic" 1 LS(0.764)S(0.046)S(0.005)WES(0.184)LQPEPSHPY 144.4 3.28E-08 12723000 458.76 434.46 732.79 494.08 500.51 523.21 471.47 621.82 539.83 713.33 TRUE FALSE 465.1840554 481.895812 547.7881015 462.3919202 568.6879357 615.9939473 560.9289713 568.9925097 591.6830835 567.9529544 0.819053853 0.848478396 0.964495558 0.814137714 1.001294088 1.084586219 0.987632808 1.001830355 1.041781857 1 9.149627621 -6.849108262 6.347127729 1.022979761 0.86839567 0.73533569 0.046441585 0.112512295 6.630767021 0.014464529 0.016511089 1.42E-07 6.849108262 -0.15458409 LS(ph)STDDGYIDLQFK ddPTM_K562_Paclitaxel_30min_R1 1 LSSTDDGYIDLQFK 14 0 Q5JWB9;A0A087WTT2;Q96A57;Q96A57-2 Q5JWB9 TMEM230 Transmembrane protein 230 1 LS(0.579)S(0.406)T(0.015)DDGYIDLQFK 98.253 0.00799 7345200 2665.8 2384.3 4208 2744.3 1851 1753.6 1676.7 2614.9 2044.6 3896.1 TRUE FALSE 2703.129425 2644.625937 3145.638356 2568.292881 2103.137538 2064.576338 1994.845072 2392.747923 2240.992966 3102.072681 0.871394613 0.85253513 1.014044054 0.827928016 0.677978163 0.665547378 0.64306845 0.771338447 0.722417943 1 11.59901677 -6.546565704 5.741775461 0.727338818 0.909354033 0.335846644 0.102656272 0.166648725 17.0522945 0.029108145 0.038798212 2.84E-07 6.546565704 0.182015214 LS(ph)TPPPLAEEEGLASR ddPTM_K562_Paclitaxel_30min_R1 2 LSTPPPLAEEEGLASR 16 0 P16157-14;P16157-10;P16157-12;P16157-21;P16157;P16157-3;P16157-16;P16157-5;P16157-8;P16157-13;P16157-4;P16157-7;P16157-6;P16157-9;P16157-11;P16157-15;H0YBS0;P16157-2 P16157-14 ANK1 Ankyrin-1 1 LS(0.592)T(0.408)PPPLAEEEGLASR;LS(0.595)T(0.405)PPPLAEEEGLASR 133.48 3.94E-07 49647000 2795.4 2459.3 3240.5 2791.5 1961.81 1858.24 2150.82 2974.2 2021.72 3120.2 TRUE FALSE 2834.544225 2727.814691 2422.395697 2612.465684 2229.041736 2187.772773 2558.926867 2721.523146 2215.915239 2484.301527 1.140982362 1.098020776 0.975081193 1.051589614 0.897250882 0.880638984 1.030038761 1.095488255 0.891967104 1 11.27862457 -5.637874988 2.000099094 0.976682258 1.150199326 0.41113646 0.068158059 0.413518806 2.898853217 0.019815423 0.099971125 2.30E-06 5.637874988 0.173517068 LS(ph)YQSLCLFLCLLWAALR ddPTM_K562_Paclitaxel_30min_R1 1 LSYQSLCLFLCLLWAALR 18 0 H0YFL6;Q8N3F9 H0YFL6 GPR137C Integral membrane protein GPR137C 1 LS(0.519)Y(0.433)QS(0.048)LCLFLCLLWAALR 48.423 0.027826 8808000 583.05 587.73 323.02 501 683.83 648.72 681.42 719.34 312.04 687.85 TRUE FALSE 591.2144989 651.900349 241.4696059 468.8681024 776.9792233 763.7613835 810.7158877 658.227577 342.0128362 547.6657924 1.079516937 1.190325118 0.440906862 0.856120848 1.418710524 1.394575659 1.480311349 1.2018782 0.624491873 1 9.097151961 -6.742093932 24.95465756 1.221833402 0.880845667 0.187370624 0.295168069 381.6099626 492255.5905 0.092031745 0.118626943 1.81E-07 6.742093932 -0.340987735 LSAS(ph)SEDISER ddPTM_K562_Paclitaxel_30min_R1 1 LSASSEDISER 11 0 Q13233 Q13233 MAP3K1 Mitogen-activated protein kinase kinase kinase 1 1 LS(0.003)AS(0.807)S(0.19)EDISER 125.03 0.0018798 27296000 1660 1470.1 1702 1179.5 1269.1 1131.1 1165.7 1152.8 1216.3 1162.9 TRUE FALSE 1683.245122 1630.61049 1272.30905 1103.852149 1441.972906 1331.684704 1386.88549 1054.862444 1333.13105 925.9003417 1.817954963 1.76110799 1.374131743 1.192193263 1.55737377 1.43825922 1.497877717 1.13928292 1.439821317 1 9.854713109 -2 0.15036135 1.043152116 3.633218781 0.559171067 0.163923613 58.22368126 0.574792235 0.616422808 32.91699728 0.01 2 2.590066665 LSASS(ph)EDISER ddPTM_K562_Paclitaxel_30min_R1 1 LSASSEDISER 11 0 Q13233 Q13233 MAP3K1 Mitogen-activated protein kinase kinase kinase 1 1 LS(0.001)AS(0.327)S(0.668)EDIS(0.004)ER 96.756 0.011885 28902000 1207.6 942.04 1478.7 1301.2 994.09 669.68 780.91 990.78 901.87 1290.9 TRUE FALSE 1224.510126 1044.895113 1105.383897 1217.746856 1129.501888 788.4383452 929.0835959 906.6070547 988.4986432 1027.813871 1.191373419 1.016619003 1.075470888 1.184793171 1.098936217 0.767102262 0.903941484 0.882073185 0.961748689 1 10.00536331 -7.179342293 8.640679734 0.895850562 1.110614166 0.670859053 0.073626632 0.215437804 21.08485497 0.023968478 0.023975758 6.62E-08 7.179342293 0.214763604 LSCS(ph)SRSS(ph)Y(ph)DMY(ph)HLSR ddPTM_K562_Paclitaxel_30min_R1 1 LSCSSRSSYDMYHLSR 16 1 A0A1W2PQ45 A0A1W2PQ45 4 LS(0.088)CS(0.877)S(0.036)RS(0.066)S(0.967)Y(0.967)DMY(0.998)HLS(0.001)R 90.707 0.0028358 592190000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 LSDISPIGRDPS(ph)ESSFSSATLTPSSTCPSLVDSR ddPTM_K562_Paclitaxel_30min_R1 1 LSDISPIGRDPSESSFSSATLTPSSTCPSLVDSR 34 1 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4;A0A0U1RQL3 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 LS(0.004)DIS(0.068)PIGRDPS(0.303)ES(0.086)S(0.086)FS(0.24)S(0.19)AT(0.021)LTPSSTCPSLVDSR 57.997 0.000553 8651500 512.26 499.76 722 510.41 393.93 541.36 397.55 704.86 430.16 571.85 TRUE FALSE 519.4332205 554.3254869 539.7221704 477.6745871 447.5899353 637.3625949 472.9830371 644.9777434 471.47879 455.3066561 1.14084258 1.217477231 1.185403646 1.049127178 0.983051597 1.399853453 1.038823024 1.416578771 1.035519213 1 8.83069474 LSDLDSETR ddPTM_K562_Paclitaxel_30min_R1 1 LSDLDSETR 9 0 Q9Y266 Q9Y266 NUDC Nuclear migration protein nudC 0 126.24 0.0095189 16098000 2330.8 1691.5 2447.1 2129.9 1898 1663.7 1757.2 1844.6 1842.1 2426.8 FALSE TRUE 2363.438391 1876.18369 1829.29934 1993.297747 2156.539733 1958.733835 2090.619527 1687.889716 2019.041936 1932.216828 1.22317452 0.971000595 0.946736056 1.031611835 1.116096135 1.013723619 1.081979774 0.873550883 1.044935489 1 10.91604128 -5.255055661 24.75226394 1.009456295 1.22317463 0.493829353 0.06509373 570.0194844 2210128.612 0.016556468 0.153159417 5.56E-06 5.255055661 0.213718336 LSDLGIS(ph)S(ph)Y(ph)GISET(ph)TLEEIFLK ddPTM_K562_Paclitaxel_30min_R1 1 LSDLGISSYGISETTLEEIFLK 22 0 O95477 O95477 ABCA1 ATP-binding cassette sub-family A member 1 4 LS(0.307)DLGIS(0.888)S(0.888)Y(0.861)GIS(0.09)ET(0.482)T(0.484)LEEIFLK 45.957 0.02106 39219000 1232.5 1086.3 1251.7 1187.8 1091.7 988.96 774.8 748.54 834.75 888.19 TRUE FALSE 1249.758803 1204.905908 935.6928542 1111.619824 1240.408023 1164.33817 921.8142553 684.9468548 914.9314673 707.1763905 1.767251876 1.703826547 1.323139272 1.571913089 1.754029178 1.64646075 1.303513901 0.968565784 1.293781127 1 9.4659263 -7.924356944 3.565885846 1.100642362 1.620248269 0.744544026 0.143348698 0.125706662 3.179126208 0.068512189 0.043379558 1.19E-08 7.924356944 0.519605907 LSDQFHDILIR ddPTM_K562_Paclitaxel_30min_R1 1 LSDQFHDILIR 11 0 H0Y9X3;A0A024QZ42;A0A087WZ38;O75340-2;O75340 H0Y9X3 PDCD6 Programmed cell death protein 6 0 130.56 0.0017959 4976600 2272.4 2552.8 2425.7 1987.2 2212.5 2040.9 2148 2265 2136.4 2423.5 FALSE TRUE 2304.220611 2831.523337 1813.302034 1859.749886 2513.879958 2402.824959 2555.571787 2072.574112 2341.610766 1929.58937 1.194150759 1.467422749 0.939734672 0.963806039 1.302805663 1.245251968 1.324412244 1.074101125 1.213528019 1 10.91407815 -10.74903789 7.616714275 1.000067465 1.190976193 0.121721899 0.154462487 0 0 0.155112213 0.037620237 1.78E-11 10.74903789 0.190908728 LSDRLGS(ph)PVDNLEDMDRDDLTDDSVFTR ddPTM_K562_Paclitaxel_30min_R1 1 LSDRLGSPVDNLEDMDRDDLTDDSVFTR 28 2 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 LS(0.059)DRLGS(0.941)PVDNLEDMDRDDLTDDSVFTR 47.919 0.011524 32100000 830.66 588.04 1010.7 988.94 582.04 771.48 737.33 1026.3 1117.5 880.74 TRUE FALSE 842.2918028 652.2441958 755.5362848 925.5138147 661.323702 908.2911459 877.2345184 939.109409 1224.840868 701.2447046 1.201138201 0.930123524 1.077421733 1.319815763 0.943071224 1.295255622 1.250967762 1.339203566 1.746666834 1 9.453774161 -7.709947284 1.58482253 1.392933939 1.097088925 0.228002056 0.203617131 0.508956454 2.611517167 0.107947134 0.068224612 1.95E-08 7.709947284 -0.295845014 LSEGS(ph)QPAEEEEDQETPSR ddPTM_K562_Paclitaxel_30min_R1 2 LSEGSQPAEEEEDQETPSR 19 0 S4R3H4;E7EQT4;Q9UKV3-5;Q9UKV3 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 LS(0.001)EGS(0.999)QPAEEEEDQETPSR;LSEGS(1)QPAEEEEDQETPSR 280.01 1.81E-139 90717000 1982.07 1452.44 2582 1732.06 1611.14 1571.06 1532.62 1956.46 1681.19 2224.4 TRUE FALSE 2009.825095 1611.022311 1930.142166 1620.973424 1830.604545 1849.665432 1823.426644 1790.246511 1842.675811 1771.066059 1.134810915 0.90963423 1.089819409 0.915252944 1.033617315 1.044379696 1.029564445 1.010829891 1.040433135 1 10.79040231 LSEGSQPAEEEEDQET(ph)PSR ddPTM_K562_Paclitaxel_30min_R1 2 LSEGSQPAEEEEDQETPSR 19 0 S4R3H4;E7EQT4;Q9UKV3-5;Q9UKV3 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 LSEGSQPAEEEEDQET(0.829)PS(0.171)R;LSEGSQPAEEEEDQET(0.821)PS(0.179)R 184.97 1.47E-15 60766000 1634.36 1179.6 1923.63 1606.17 1104.76 1171.73 1358.95 1505 1282.5 1863.97 TRUE FALSE 1657.246082 1308.392717 1437.985815 1503.157445 1255.247016 1379.519864 1616.803668 1377.140856 1405.689855 1484.091891 1.116673498 0.881611661 0.96893314 1.012846613 0.845801411 0.929538037 1.089422884 0.927935032 0.947171711 1 10.53536471 -10.93015793 16.07846591 0.999996967 0.965173257 0.011392209 0.080554308 0 0 0.075691103 0.018357789 1.17E-11 10.93015793 -0.03482371 LSELHAYILR ddPTM_K562_Paclitaxel_30min_R1 2 LSELHAYILR 10 0 P02008 P02008 HBZ Hemoglobin subunit zeta 0 ; 198.61 4.08E-05 47141000 14255.5 15155.6 16697.3 15231.5 12443.7 12743.8 17281.2 20703.5 9516.5 24573 FALSE TRUE 14455.12098 16810.33966 12481.86011 14254.61976 14138.74261 15003.734 20560.21749 18944.60845 10430.60235 19565.00911 0.73882516 0.859204285 0.63796853 0.728577211 0.722654538 0.766865679 1.050866747 0.968290295 0.533125351 1 14.25598816 -7.548544906 24.88025412 0.888776495 0.738847922 0.208226201 0.140172793 349.0652223 338373.3982 0.053178552 0.041193295 2.83E-08 7.548544906 -0.149928573 LSFASETPLEKEPHS(ph)PADQPEQQAESTLTSAETR ddPTM_K562_Paclitaxel_30min_R1 4 LSFASETPLEKEPHSPADQPEQQAESTLTSAETR 34 1 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2 H3BSS6 ZNF106 Zinc finger protein 106 1 LSFAS(0.01)ET(0.01)PLEKEPHS(0.979)PADQPEQQAESTLTSAETR;LSFAS(0.001)ET(0.001)PLEKEPHS(0.998)PADQPEQQAESTLTSAETR;LSFAS(0.002)ET(0.001)PLEKEPHS(0.997)PADQPEQQAESTLTSAETR;LSFAS(0.027)ET(0.003)PLEKEPHS(0.97)PADQPEQQAESTLTSAETR 100.7 1.32E-12 272594000 5747.2 4403.96 9487.8 6411.3 4669.67 4669.68 4432.73 5400.88 6208.8 7140.6 TRUE FALSE 5827.678532 4884.799246 7092.487546 6000.107914 5305.758112 5497.782182 5273.817377 4942.041533 6805.182982 5685.3418 1.025035739 0.859191834 1.24750416 1.055364501 0.933234676 0.967009966 0.927616591 0.869260232 1.196969896 1 12.47303137 -6.745727744 24.52559978 0.972308044 1.04771322 0.062026167 0.118928684 535.5533087 835984.8765 0.035275768 0.045373044 1.80E-07 6.745727744 0.075405176 LSGINEIPRPFS(ph)PPVTSNTSPPPAAPLAR ddPTM_K562_Paclitaxel_30min_R1 2 LSGINEIPRPFSPPVTSNTSPPPAAPLAR 29 1 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 1 LSGINEIPRPFS(0.998)PPVT(0.001)SNTSPPPAAPLAR;LSGINEIPRPFS(0.999)PPVT(0.001)SNTSPPPAAPLAR 111.27 4.53E-10 148731000 2262.1 2494.78 3189 2456.1 2084.64 2422.31 2241.1 2984.5 2100.81 3219.8 TRUE FALSE 2293.776379 2767.168517 2383.897509 2298.576739 2368.603261 2851.872668 2666.337026 2730.948096 2302.602187 2563.602993 0.894747114 1.079406025 0.929901204 0.896619619 0.923935285 1.112447082 1.040074081 1.065277309 0.89818985 1 11.32395714 -7.227996915 24.96005419 1.028332312 0.948875249 0.232047279 0.070709753 972.3634483 725731.916 0.023602508 0.023601113 5.92E-08 7.227996915 -0.079457063 LSGLAAPDYTRLS(ph)PAK ddPTM_K562_Paclitaxel_30min_R1 1 LSGLAAPDYTRLSPAK 16 1 Q8TEK3-1;Q8TEK3 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 1 LSGLAAPDYT(0.248)RLS(0.752)PAK 125.45 0.00019866 11708000 975.82 1008.5 1878.9 1534 862.75 846.52 809.73 1243.9 933.23 1808.4 TRUE FALSE 989.4844907 1118.611441 1404.548457 1435.616106 980.2711565 996.6384363 963.3720404 1138.222931 1022.870911 1439.847087 0.687214982 0.776895998 0.975484459 0.997061506 0.680816154 0.692183528 0.669079411 0.790516535 0.710402459 1 10.49169989 -5.308251731 4.752653209 0.803400101 0.684422963 0.078327291 0.126611464 0.531939169 26.30965363 0.034013902 0.174461408 4.92E-06 5.308251731 -0.118977138 LSGLS(ph)FK ddPTM_K562_Paclitaxel_30min_R1 1 LSGLSFK 7 0 P49006 P49006 MARCKSL1 MARCKS-related protein 1 LSGLS(1)FK 101.46 0.0096121 20683000 4598 3028.7 8327 4705.6 4555.2 3696.5 3944.3 5455.3 4103.5 7546.7 TRUE FALSE 4662.386186 3359.383708 6224.745863 4403.803877 5175.69536 4352.022374 4692.710334 4991.838214 4497.65951 6008.678398 0.775942042 0.559088619 1.035959233 0.732907236 0.861370008 0.72428945 0.780988767 0.830771408 0.748527249 1 12.55283199 -11.81342475 2.479680436 1.074201473 0.78455608 0.245594138 0.113912262 44095732.67 27830161.47 19578088.24 0.028241041 1.54E-12 11.81342475 -0.289645394 LSGLS(ph)FKR ddPTM_K562_Paclitaxel_30min_R1 1 LSGLSFKR 8 1 P49006 P49006 MARCKSL1 MARCKS-related protein 1 LSGLS(1)FKR 94.363 0.0299 281230000 3736.4 2769.2 6059.5 4136.2 2890.5 2830.1 3261.8 5758.8 4651.8 6257.4 TRUE FALSE 3788.721128 3071.550621 4529.704282 3870.922645 3284.235037 3331.978498 3880.709522 5269.553995 5098.626175 4982.138445 0.760460828 0.616512499 0.909188761 0.776960072 0.659201881 0.668784807 0.778924465 1.057689194 1.02338107 1 12.2825494 -8.202006099 4.693803947 1.031242993 0.733355803 0.747285256 0.077091009 0.106806056 4.885584364 0.040269305 0.022062744 6.28E-09 8.202006099 -0.29788719 LSGNS(ph)CLS(ph)T(ph)SVTEDIKTEDDKAY(ph)AYR ddPTM_K562_Paclitaxel_30min_R1 1 LSGNSCLSTSVTEDIKTEDDKAYAYR 26 2 C9J879;Q9H3R0-3;Q9H3R0-4;Q9H3R0-2;Q9H3R0 C9J879 KDM4C Lysine-specific demethylase 4C 4 LS(0.029)GNS(0.733)CLS(0.733)T(0.734)S(0.733)VT(0.043)EDIKT(0.106)EDDKAY(0.788)AY(0.1)R 43.497 0.018122 46485000 370.85 698.08 482.28 669 500.33 409.37 720.25 500.67 300.7 612.56 TRUE FALSE 376.0430442 774.2987352 360.5224492 626.0933343 568.4834167 481.9660217 856.9136775 458.1349584 329.5835786 487.7199358 0.7710225 1.587588857 0.739199739 1.283714871 1.165593971 0.988202422 1.756978985 0.939340234 0.675764008 1 8.929909134 -8.508617158 24.72481274 0.827771894 1.190625823 0.180716596 0.31003618 853.1795318 1479142.318 0.168615526 0.07589801 3.10E-09 8.508617158 0.362853929 LSLEGDHST(ph)PPSAYGSVK ddPTM_K562_Paclitaxel_30min_R1 1 LSLEGDHSTPPSAYGSVK 18 0 P07355-2;P07355;H0YN42;H0YMU9;H0YMD0;A6NMY6;H0YKS4;H0YMM1;H0YMW4;H0YNB8;H0YMT9;H0YLV6;H0YKZ7;H0YKL9;H0YKV8;H0YKN4;H0YMD9;H0YKX9 P07355-2 ANXA2;ANXA2P2 Annexin A2;Annexin;Putative annexin A2-like protein 1 LSLEGDHS(0.015)T(0.985)PPSAYGSVK 103.2 0.0010249 44721000 3933.7 3222 6382.4 4457.8 3153 2520.9 2604.5 4279.2 4175.7 4621.1 TRUE FALSE 3988.783937 3573.788856 4771.084183 4171.89666 3582.491981 2967.94622 3098.690279 3915.65525 4576.794643 3679.317283 1.084109803 0.971318476 1.296730838 1.133877929 0.973683894 0.806656777 0.842191646 1.06423419 1.24392497 1 11.84522238 -4.910103036 17.08583454 1.034431082 2.791314724 0.008711284 0.148715436 762.6774655 155042.2523 0.039530876 3564.363868 1.23E-05 4.910103036 1.756883642 LSLFSDGDS(ph)SESEDTLSSSER ddPTM_K562_Paclitaxel_30min_R1 3 LSLFSDGDSSESEDTLSSSER 21 0 M0QZ79;M0QXD7;M0R025;M0QYG0;M0QYA8;Q8IV63-2;Q8IV63 M0QZ79 VRK3 Inactive serine/threonine-protein kinase VRK3 1 LSLFSDGDS(0.458)S(0.348)ES(0.186)EDT(0.006)LS(0.002)SSER;LSLFSDGDS(0.489)S(0.489)ES(0.022)EDTLSSSER;LSLFSDGDS(0.576)S(0.421)ES(0.003)EDTLSSSER 149.42 6.44E-18 33079900 3250.84 3193.84 4651.58 3674.56 3034.34 3140.91 2928.67 4080.1 4306.07 4391.07 TRUE FALSE 3296.36179 3542.554252 3477.231099 3438.890168 3447.66848 3697.906288 3484.369844 3733.470038 4719.687264 3496.167524 0.942850069 1.013267879 0.994583662 0.983617102 0.986127941 1.057702831 0.996625539 1.067875041 1.349960273 1 11.7715586 -8.532770075 24.9968451 1.186292723 1.0008616 0.421430581 0.082954225 176.7903031 446764.3999 0.050736523 0.019224377 2.93E-09 8.532770075 -0.185431123 LSLFSDGDSS(ph)ESEDTLSSSER ddPTM_K562_Paclitaxel_30min_R1 1 LSLFSDGDSSESEDTLSSSER 21 0 M0QZ79;M0QXD7;M0R025;M0QYG0;M0QYA8;Q8IV63-2;Q8IV63 M0QZ79 VRK3 Inactive serine/threonine-protein kinase VRK3 1 LSLFSDGDS(0.061)S(0.902)ES(0.037)EDTLSSSER 185.2 8.02E-23 24909000 1267.9 1084.1 1598.9 1364 906.76 895.71 985.74 1012.9 1285.3 1223.9 TRUE FALSE 1285.654512 1202.465704 1195.23792 1276.519145 1030.276064 1054.551592 1172.779019 926.8478227 1408.758808 974.4685082 1.31933921 1.23397082 1.226553665 1.309964493 1.057269737 1.082181295 1.203506331 0.951131632 1.445668891 1 9.928471753 -6.756075216 24.99935383 1.122804643 1.266429228 0.240047935 0.129842288 197.9272359 922422.4574 0.036423166 0.045635467 1.75E-07 6.756075216 0.143624585 LSLS(ph)PLR ddPTM_K562_Paclitaxel_30min_R1 1 LSLSPLR 7 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 LS(0.002)LS(0.998)PLR 93.598 0.016163 95114000 3074.4 3328.5 4331.2 3570.8 2652.8 2684.3 3666.7 4095.9 2171.1 4723.3 TRUE FALSE 3117.451085 3691.916886 3237.734992 3341.78487 3014.156272 3160.322916 4362.437184 3747.927729 2379.643856 3760.688867 0.828957458 0.98171293 0.860941999 0.88860977 0.801490466 0.840357452 1.16001013 0.996606702 0.632768075 1 11.87678124 LSLVIRS(ph)PSLLQSGAK ddPTM_K562_Paclitaxel_30min_R1 1 LSLVIRSPSLLQSGAK 16 1 Q9BQG0;Q9BQG0-2;I3L1L3;I3L2H8 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 LS(0.003)LVIRS(0.985)PS(0.012)LLQSGAK 98.421 0.0029576 22159000 2186 1798.9 3054.5 2017.1 1702.1 1907.2 1525.4 2279.4 1983.5 2572.5 TRUE FALSE 2216.610744 1995.309985 2283.353697 1887.732234 1933.954837 2245.415142 1814.836687 2085.750742 2174.024038 2048.223088 1.08221158 0.974166338 1.114797363 0.921643861 0.944211033 1.096274695 0.886054208 1.018322054 1.061419555 1 11.00015714 -2.000018181 0.833168219 0.996018469 25.261204 0.094259729 0.070730921 1585.93019 4.727040755 0.024035748 72849.29287 0.009999581 2.000018181 24.26518553 LSMPQSAAVS(ph)TTPPHNRR ddPTM_K562_Paclitaxel_30min_R1 2 LSMPQSAAVSTTPPHNRR 18 1 A2A2F0;Q86X10-4;Q86X10-2;Q86X10-3;Q86X10 A2A2F0 RALGAPB Ral GTPase-activating protein subunit beta 1 LSMPQS(0.174)AAVS(0.367)T(0.367)T(0.092)PPHNRR;LSMPQS(0.145)AAVS(0.394)T(0.394)T(0.067)PPHNRR 53.861 0.026611 38902000 1217.27 786.28 1141.95 993.52 961.81 1033.75 726.86 1008.02 816 1158.65 TRUE FALSE 1234.315536 872.1287094 853.650599 929.800074 1092.824806 1217.071048 864.7778905 922.3824091 894.380446 922.516494 1.337987498 0.945380072 0.925349958 1.007895339 1.184612755 1.319294621 0.937411847 0.999854653 0.969500764 1 9.849430896 LSPERS(ph)SDSESNENEPHLPHGVSQR ddPTM_K562_Paclitaxel_30min_R1 1 LSPERSSDSESNENEPHLPHGVSQR 25 1 V9GYS7;E7ES68;G5E9D5;Q9BQ52-2;Q9BQ52 V9GYS7 ELAC2 Zinc phosphodiesterase ELAC protein 2 1 LS(0.063)PERS(0.234)S(0.234)DS(0.234)ES(0.234)NENEPHLPHGVSQR 52.654 0.013827 30082000 1421.3 1233.1 1534.6 1431.6 1207.4 1157.1 1262.1 1501.7 1372.3 1598.1 TRUE FALSE 1441.202585 1367.734028 1147.17125 1339.783584 1371.868321 1362.295439 1501.576886 1374.121212 1504.115547 1272.406343 1.13265907 1.074919216 0.90157618 1.052952613 1.078168408 1.07064496 1.180107986 1.079938983 1.182103151 1 10.31334375 -7.136184496 1.932438493 1.115092905 1.034789811 0.131505569 0.073429211 0.596709626 4.40575091 0.028810024 0.028801762 7.31E-08 7.136184496 -0.080303094 LSPLPPGSPGS(ph)AAR ddPTM_K562_Paclitaxel_30min_R1 1 LSPLPPGSPGSAAR 14 0 Q6ZN18-2;Q6ZN18 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 1 LSPLPPGS(0.172)PGS(0.827)AAR 98.654 0.0077885 14096000 1403.8 1178.1 1559.9 1587.3 1332.5 975.2 1212.3 1124 989.73 1524.2 TRUE FALSE 1423.457531 1306.728942 1166.083952 1485.497682 1514.009059 1148.138028 1442.327596 1028.509184 1084.797989 1213.567203 1.172953197 1.076766856 0.960872994 1.224075336 1.247569195 0.946085247 1.188502452 0.847509047 0.893891979 1 10.24503829 -8.264984175 24.99924621 0.903025376 1.111763288 0.450753086 0.10232388 286.5684823 2020965.279 0.053700078 0.02736822 5.43E-09 8.264984175 0.208737912 LSPPAGLFTSARGS(ph)LS ddPTM_K562_Paclitaxel_30min_R1 1 LSPPAGLFTSARGSLS 16 1 K7EK35;P42229;P42229-2 K7EK35 STAT5A Signal transducer and activator of transcription;Signal transducer and activator of transcription 5A 1 LSPPAGLFT(0.001)S(0.003)ARGS(0.569)LS(0.428) 103.88 0.0065593 16657000 1184.7 920.31 1250.6 956.24 806.89 872.67 1004.2 953.77 1181.7 1247.5 TRUE FALSE 1201.289455 1020.792558 934.8705628 894.9110464 916.8020788 1027.425772 1194.741708 872.7412853 1295.207565 993.2588152 1.209442531 1.027720613 0.94121547 0.900984751 0.923024356 1.034398845 1.202850344 0.878664525 1.303998057 1 9.956025882 -7.527755582 24.97788307 1.090889468 0.991725353 0.102337278 0.132458367 318.6032492 1631778.242 0.049464116 0.038458645 2.97E-08 7.527755582 -0.099164115 LSPPVASGGIPHQS(ph)PPTK ddPTM_K562_Paclitaxel_30min_R1 1 LSPPVASGGIPHQSPPTK 18 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 LSPPVASGGIPHQS(0.964)PPT(0.036)K 74.742 0.012275 8987600 1575.5 1163.2 2795.6 1588.7 1169.3 1327.7 1322.7 2103.8 1268.6 2501.8 TRUE FALSE 1597.561861 1290.20211 2089.816204 1486.807893 1328.578456 1563.148953 1573.67542 1925.069058 1390.454698 1991.931787 0.80201635 0.647714002 1.049140447 0.746415064 0.666979896 0.784740202 0.790024754 0.966433224 0.69804333 1 10.95995253 -15 0.286252628 2.547863577 0.78503472 0.203491432 0.12038927 396.642317 3.769361404 365.6407723 0.132223372 1.00E-15 15 -1.762828857 LSPQDPRPLS(ph)PGALQLAGEK ddPTM_K562_Paclitaxel_30min_R1 1 LSPQDPRPLSPGALQLAGEK 20 1 Q8TEK3-1;Q8TEK3 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 1 LSPQDPRPLS(1)PGALQLAGEK 59.005 0.024266 20495000 2525.5 2390.8 5010.2 2760.6 2295.3 2266.3 1886.7 2998 2519.5 3511.6 TRUE FALSE 2560.864792 2651.835629 3745.313045 2583.547472 2607.95872 2668.196485 2244.691476 2743.301187 2761.509232 2795.933992 0.915924624 0.948461457 1.339557033 0.924037362 0.932768344 0.954313117 0.80284137 0.981175233 0.987687563 1 11.44911459 LSPS(ph)PSSR ddPTM_K562_Paclitaxel_30min_R1 2 LSPSPSSR 8 0 P20700;Q03252 P20700;Q03252 LMNB1;LMNB2 Lamin-B1;Lamin-B2 1 LS(0.001)PS(0.952)PS(0.047)S(0.001)R;LSPS(0.92)PS(0.079)SR 128.35 0.0010012 187434000 5230.1 5547.7 7412.3 5776 5298.5 4675 5133.6 5858.8 4762.5 6817.8 TRUE FALSE 5303.337536 6153.416647 5540.973191 5405.553212 6020.245404 5504.04561 6107.673801 5361.058371 5219.959404 5428.328618 0.976974297 1.133574822 1.020751244 0.995804343 1.10904218 1.013948491 1.125148131 0.987607558 0.961614481 1 12.40629235 -8.486674672 24.14805314 0.978741807 1.053985993 0.277920723 0.052152016 437.6950426 291943.2123 0.026809448 0.012869785 3.26E-09 8.486674672 0.075244186 LSPS(ph)PTSQR ddPTM_K562_Paclitaxel_30min_R1 4 LSPSPTSQR 9 0 P02545-6;P02545;P02545-3;P02545-5;P02545-4;A0A0C4DGC5;Q3BDU5;P02545-2;Q5TCI8 P02545-6;Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C 1 LS(0.077)PS(0.921)PT(0.003)SQR;LS(0.204)PS(0.794)PT(0.002)SQR;LS(0.113)PS(0.885)PT(0.002)SQR;LS(0.033)PS(0.955)PT(0.012)SQR 133.91 0.00075867 937250000 6941.8 6224.6 8744.1 7541.3 6136.68 6147.36 5816.7 7257.9 6506.6 7194.7 TRUE FALSE 7039.006617 6904.222878 6536.543809 7057.634772 6972.599711 7237.507983 6920.38846 6641.296093 7131.588002 5728.416191 1.228787571 1.2052586 1.141073482 1.232039457 1.217195029 1.263439621 1.208080598 1.159359912 1.244949348 1 12.4839206 -11.27787435 4.364632835 0.99985222 1.209617575 0.764992356 0.035097411 5.15E-05 8.52E-06 0.034676621 0.00840441 5.27E-12 11.27787435 0.209765355 LSQMQS(ph)PIPLTETR ddPTM_K562_Paclitaxel_30min_R1 4 LSQMQSPIPLTETR 14 0 H3BSW6;Q2VPK5-3;Q2VPK5;Q2VPK5-5 H3BSW6 CTU2 Cytoplasmic tRNA 2-thiolation protein 2 1 LSQMQS(0.997)PIPLT(0.003)ETR;LS(0.01)QMQS(0.99)PIPLTETR;LS(0.083)QMQS(0.916)PIPLT(0.001)ETR;LS(0.001)QMQS(0.917)PIPLT(0.081)ETR 203.06 7.35E-10 385076000 8356.1 7750.3 9792.8 8897.2 7457.3 6951.4 7045.3 8924.1 7755.7 9215.4 TRUE FALSE 8473.111181 8596.503964 7320.486524 8326.573414 8473.110513 8184.133188 8382.108896 8165.942003 8500.669638 7337.296422 1.154800174 1.171617374 0.997708979 1.134828544 1.154800083 1.115415368 1.142397474 1.112936092 1.158556115 1 12.84103285 -11.24380482 3.644212758 0.999786495 1.125261309 0.398122611 0.046803999 35519048.61 57990222.57 87381.14696 0.01176815 5.70E-12 11.24380482 0.125474815 LSQNSMHSSPASSNYQQTTIS(ph)HSPSSR ddPTM_K562_Paclitaxel_30min_R1 1 LSQNSMHSSPASSNYQQTTISHSPSSR 27 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 LSQNSMHSSPASSNY(0.001)QQT(0.006)T(0.035)IS(0.574)HS(0.3)PS(0.065)S(0.02)R 81.297 5.50E-06 18543000 1051.9 891.83 1111.2 1021.8 839.8 852.61 966.12 1096.8 916.82 1405.6 TRUE FALSE 1066.629845 989.2030154 830.6638169 956.2663214 954.1949779 1003.808412 1149.436227 1003.619994 1004.884657 1119.137948 0.953081653 0.883897304 0.742235413 0.854466889 0.852616051 0.896947882 1.027072872 0.896779522 0.897909555 1 10.12817216 -7.526417494 24.90966426 0.949006162 0.854452767 0.363193409 0.061011486 123.3295457 868113.1441 0.024231097 0.018865068 2.98E-08 7.526417494 -0.094553395 LSQNSMHSSPASSNYQQTTISHS(ph)PSSR ddPTM_K562_Paclitaxel_30min_R1 2 LSQNSMHSSPASSNYQQTTISHSPSSR 27 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 LSQNSMHSSPASSNYQQT(0.002)T(0.002)IS(0.033)HS(0.659)PS(0.238)S(0.066)R;LSQNSMHSSPASSNYQQT(0.001)T(0.002)IS(0.016)HS(0.922)PS(0.048)S(0.012)R 118.62 3.12E-12 29257000 2154.42 2590.7 2414.41 2478.78 1990.02 2079.88 2278.1 2866.5 1917.68 3237.4 TRUE FALSE 2184.588527 2873.561387 1804.862334 2319.802145 2261.094415 2448.717515 2710.357583 2622.972933 2101.881732 2577.616103 0.847522843 1.114813561 0.700206029 0.899979692 0.877203713 0.949993101 1.051497769 1.017596426 0.815436298 1 11.3318217 -7.397551035 4.749319315 0.97592795 0.891166334 0.113380327 0.110711897 0.536824017 18.45634324 0.039856008 0.034746371 4.00E-08 7.397551035 -0.084761615 LSQSSQDS(ph)SPVR ddPTM_K562_Paclitaxel_30min_R1 1 LSQSSQDSSPVR 12 0 O95251;O95251-4;O95251-2 O95251 KAT7 Histone acetyltransferase KAT7 1 LSQSSQDS(0.892)S(0.108)PVR 143.58 0.00012137 55591000 5298.1 5072.7 6182.9 5619.9 4935.4 4285.7 4907.7 6478.5 3556.5 6367.5 TRUE FALSE 5372.289746 5626.554541 4621.950426 5259.464768 5607.685037 5045.708721 5838.910455 5928.110987 3898.117716 5069.800005 1.059665024 1.10981785 0.911663265 1.037410699 1.106095907 0.99524808 1.151704298 1.169298785 0.76888984 1 12.30771312 -8.759363485 24.99990258 0.884444935 1.064488391 0.407337758 0.088311961 51.7926577 623800.394 0.066433702 0.022278362 1.74E-09 8.759363485 0.180043456 LSQSSQDS(ph)SPVRNLQSFGTEEPAYSTR ddPTM_K562_Paclitaxel_30min_R1 4 LSQSSQDSSPVRNLQSFGTEEPAYSTR 27 1 O95251;O95251-4;O95251-2 O95251 KAT7 Histone acetyltransferase KAT7 1 LSQS(0.001)S(0.001)QDS(0.498)S(0.498)PVRNLQS(0.002)FGT(0.001)EEPAYSTR;LSQS(0.005)S(0.013)QDS(0.441)S(0.441)PVRNLQS(0.04)FGT(0.059)EEPAYSTR;LSQS(0.002)S(0.004)QDS(0.495)S(0.495)PVRNLQS(0.002)FGT(0.002)EEPAYSTR;LSQS(0.001)S(0.003)QDS(0.498)S(0.498)PVRNLQSFGTEEPAYSTR 93.949 1.39E-06 676824000 2947.42 2931.21 3813.1 3180.81 2781.72 2590.1 2421.85 3227.85 3602.95 2966.16 TRUE FALSE 2988.692974 3251.249421 2850.435745 2976.807083 3160.637359 3049.417868 2881.383395 2953.623995 3949.029446 2361.654964 1.265507883 1.376682653 1.206965365 1.260475018 1.338314617 1.291220739 1.220069586 1.250658559 1.67214496 1 11.20558249 LSQSSQDSS(ph)PVR ddPTM_K562_Paclitaxel_30min_R1 3 LSQSSQDSSPVR 12 0 O95251;O95251-4;O95251-2 O95251 KAT7 Histone acetyltransferase KAT7 1 LSQSSQDS(0.405)S(0.595)PVR;LSQSSQDS(0.005)S(0.995)PVR;LSQS(0.002)S(0.001)QDS(0.046)S(0.951)PVR 148.18 0.00037075 162190000 11988.2 11360.4 16082.3 14162.6 11940 11752 11876.3 14775.1 8375.6 14788.5 TRUE FALSE 12156.07179 12600.76689 12022.12446 13254.27423 13566.43015 13836.05219 14129.76593 13519.86303 9180.113803 11774.59558 1.032398243 1.070165578 1.021022283 1.125667046 1.152178013 1.175076638 1.200021336 1.148223133 0.779654277 1 13.52338989 -8.748808507 24.99998866 0.889827125 1.117279615 0.595420449 0.074430281 136.7205096 270611.1409 0.053391973 0.019879934 1.78E-09 8.748808507 0.22745249 LSRFDIEMS(ph)MRGDIFER ddPTM_K562_Paclitaxel_30min_R1 1 LSRFDIEMSMRGDIFER 17 2 Q9BYT8;E9PCB6 Q9BYT8 NLN "Neurolysin, mitochondrial" 1 LSRFDIEMS(1)MRGDIFER 59.198 0.029153 13830000 0 0 214.22 104.96 0 61.313 150.13 162.92 119.15 109.76 TRUE FALSE 0 0 160.1375116 98.22833538 0 72.18599967 178.6163838 149.0789291 130.5948899 87.39085175 0 0 1.832428777 1.124011649 0 0.826013229 2.043879653 1.705887128 1.494377126 1 6.449410358 -7.634873491 6.343086041 1.614362527 0.63450515 0.376702356 0.589264028 0.244054928 12.69690252 0.241803993 0.186073132 2.32E-08 7.634873491 -0.979857377 LSS(ph)EDEEEDEAEDDQSEASGKK ddPTM_K562_Paclitaxel_30min_R1 1 LSSEDEEEDEAEDDQSEASGKK 22 1 Q8NEJ9-2;Q8NEJ9;G3V4G1 Q8NEJ9-2 NGDN Neuroguidin 1 LS(0.032)S(0.968)EDEEEDEAEDDQSEASGKK 191.73 4.59E-24 9900100 761.12 354.54 1760.3 774 534.78 331.31 604.47 697.98 611.43 873.63 TRUE FALSE 771.7780283 393.2498762 1315.890494 724.3591043 607.6260899 390.0631767 719.165027 638.6822423 670.1605834 695.5837265 1.109540087 0.565352324 1.891778723 1.041368676 0.873548455 0.560770993 1.033901455 0.918196068 0.963450636 1 9.44208037 -6.524657728 23.23332857 0.885335631 1.183209147 0.146965874 0.322044664 45.83241643 598544.4876 0.095781549 0.124756792 2.99E-07 6.524657728 0.297873516 LSS(ph)GFDDIDLPSAVK ddPTM_K562_Paclitaxel_30min_R1 1 LSSGFDDIDLPSAVK 15 0 Q9Y446;Q9Y446-2;E9PKC4 Q9Y446 PKP3 Plakophilin-3 1 LS(0.062)S(0.938)GFDDIDLPSAVK 285.75 8.39E-148 11249000 2598.6 1796.1 3232.9 2180 1920.7 2044.9 1793.1 2901.7 2646.1 4384.3 TRUE FALSE 2634.988417 1992.204272 2416.714411 2040.184557 2182.331858 2407.534303 2133.331364 2655.182473 2900.269728 3490.777253 0.754842898 0.570705069 0.692314128 0.58444994 0.625170757 0.689684311 0.611133627 0.760627872 0.83083781 1 11.76933259 -8.889168745 1.283545259 0.9971775 0.641934142 0.808480715 0.054677161 0.159584159 0.579687038 0.047843588 0.014931156 1.29E-09 8.889168745 -0.355243358 LSS(ph)PVLHR ddPTM_K562_Paclitaxel_30min_R1 2 LSSPVLHR 8 0 Q16643;Q16643-2;Q16643-3;D6RCR4;D6R9W4 Q16643 DBN1 Drebrin 1 LS(0.129)S(0.871)PVLHR;LS(0.018)S(0.982)PVLHR 152.06 5.72E-06 1791444000 8239 8173.6 10916 8818.2 7854 7220.6 7623.3 8743.6 8478.6 9746.4 TRUE FALSE 8354.371419 9066.021289 8160.120793 8252.640121 8923.847769 8501.072028 9069.781379 8000.776604 9293.007413 7760.07833 1.076583388 1.16828992 1.051551343 1.063473817 1.149968775 1.095487915 1.168774462 1.031017506 1.197540414 1 12.9218555 -11.19254827 4.730647222 0.999983357 1.109900775 0.275915559 0.054094382 8.80E-06 1.50E-06 0.048522295 0.011766604 6.42E-12 11.19254827 0.109917418 LSS(ph)SDRYSDASDDS(ph)FSEPR ddPTM_K562_Paclitaxel_30min_R1 1 LSSSDRYSDASDDSFSEPR 19 1 Q9NRF8 Q9NRF8 CTPS2 CTP synthase 2 2 LS(0.021)S(0.883)S(0.08)DRYS(0.016)DAS(0.001)DDS(0.976)FS(0.023)EPR 171.39 1.73E-54 0 821.44 636.15 731 747.16 528.68 473.44 479.55 705.21 683.1 862.95 TRUE FALSE 832.9426944 705.6070083 546.4500091 699.2405018 600.6951666 557.3979366 570.5421091 645.2980087 748.7148072 687.0803163 1.212293053 1.026964376 0.79532188 1.017698346 0.874272123 0.811255865 0.83038634 0.939188612 1.089704929 1 9.424334943 -5.408022501 3.385759883 0.911999818 1.213617339 0.482994405 0.092000408 0.218190205 4.133198294 0.02387267 0.133018011 3.91E-06 5.408022501 0.301617521 LSS(ph)SWESLQPEPSHPY ddPTM_K562_Paclitaxel_30min_R1 1 LSSSWESLQPEPSHPY 16 0 P11277 P11277 SPTB "Spectrin beta chain, erythrocytic" 1 LS(0.109)S(0.847)S(0.044)WESLQPEPSHPY 119.17 0.00036635 13399000 930.54 844.14 1145 1133.9 867.57 810.64 945.3 1187.4 1108.8 1399.9 TRUE FALSE 943.570431 936.3060599 855.9305888 1061.176729 985.7477221 954.395622 1124.66574 1086.522958 1215.305194 1114.599612 0.8465555 0.840038028 0.767926509 0.95206989 0.884396255 0.856267679 1.009031161 0.9748101 1.090351353 1 10.12230984 -7.766872712 0.923552278 1.043268464 0.841622016 0.681487696 0.05281497 0.338700045 0.566758617 0.040472533 0.023227296 1.71E-08 7.766872712 -0.201646448 LSS(ph)TDDGYIDLQFK ddPTM_K562_Paclitaxel_30min_R1 1 LSSTDDGYIDLQFK 14 0 Q5JWB9;A0A087WTT2;Q96A57;Q96A57-2 Q5JWB9 TMEM230 Transmembrane protein 230 1 LS(0.016)S(0.977)T(0.007)DDGYIDLQFK 214.18 2.29E-18 5606600 1687.9 1381.2 3663.7 1825.6 1327.7 1114.3 1157.4 1485.7 1598.6 2323.2 TRUE FALSE 1711.535808 1532.004087 2738.753623 1708.514187 1508.555218 1311.905459 1377.010608 1359.480512 1752.152673 1849.730565 0.92528925 0.828230941 1.480623003 0.923655704 0.815554031 0.709241381 0.744438479 0.734961371 0.947247511 1 10.85309943 -6.517484874 23.37547007 0.808280763 1.077911553 0.280947674 0.179775354 122.5920566 531280.7107 0.053102174 0.070861532 3.04E-07 6.517484874 0.26963079 LSS(ph)TPPLSALGR ddPTM_K562_Paclitaxel_30min_R1 1 LSSTPPLSALGR 12 0 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 1 LSS(0.494)T(0.494)PPLS(0.012)ALGR 137.4 0.000202 125580000 3315.8 3343.8 4184.6 3405.2 3404.7 3096 3280.2 4270.9 3635.7 4139 TRUE FALSE 3362.23143 3708.887392 3128.145976 3186.805713 3868.477782 3645.03213 3902.600826 3908.060387 3984.92523 3295.469528 1.020258692 1.125450368 0.949226187 0.967026303 1.173877576 1.106073687 1.184232108 1.185888795 1.209213193 1 11.68626832 -6.769460717 24.99211412 1.152702549 1.018611511 0.434893477 0.070797051 163.0707577 508078.8376 0.021743707 0.025081628 1.70E-07 6.769460717 -0.134091038 LSSANSLPAGEQDS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 LSSANSLPAGEQDSPR 16 0 O43182-4;O43182 O43182-4 ARHGAP6 Rho GTPase-activating protein 6 1 LSSANSLPAGEQDS(1)PR 129.42 4.39E-09 0 839.96 853.19 1199.9 901.86 811.23 831.82 969.88 1261.5 844.18 1185.9 TRUE FALSE 851.7220315 946.3441695 896.9704048 844.0187362 921.7332602 979.3315977 1153.909667 1154.327701 925.2672609 944.212929 0.902044449 1.002257161 0.949966239 0.893886019 0.976192162 1.03719359 1.222086281 1.222529014 0.979934962 1 9.882968428 -7.410632962 3.111073272 1.124877824 0.944729056 0.45980558 0.080879528 0.215203642 3.964785849 0.030865001 0.026273163 3.88E-08 7.410632962 -0.180148768 LSSEMNTS(ph)TVNSAR ddPTM_K562_Paclitaxel_30min_R1 1 LSSEMNTSTVNSAR 14 0 P20700;E9PBF6;A0A0D9SFE5 P20700 LMNB1 Lamin-B1 1 LS(0.001)S(0.001)EMNT(0.127)S(0.811)T(0.06)VNSAR 103.6 0.0052985 9223700 1783.9 1665.4 1761 1666.1 1490.7 1609.7 1920.8 1846.2 1766.9 2911.7 TRUE FALSE 1808.880104 1847.234004 1316.41377 1559.243803 1693.758578 1895.157694 2285.261773 1689.353786 1936.61864 2318.293942 0.780263482 0.796807502 0.567837299 0.672582443 0.730605618 0.817479466 0.985751518 0.728705604 0.835363715 1 11.17884779 -7.305013464 3.280192601 0.868149904 0.702305196 0.443558949 0.093102457 0.266911834 5.848424597 0.035348396 0.031892309 4.95E-08 7.305013464 -0.165844707 LSSESHHGGS(ph)PIHWVLPAGMSAK ddPTM_K562_Paclitaxel_30min_R1 4 LSSESHHGGSPIHWVLPAGMSAK 23 0 J3QR07;Q96MU7-2;Q96MU7 J3QR07 YTHDC1 YTH domain-containing protein 1 1 LS(0.005)S(0.006)ES(0.014)HHGGS(0.975)PIHWVLPAGMSAK;LS(0.133)S(0.148)ES(0.133)HHGGS(0.586)PIHWVLPAGMSAK;LS(0.23)S(0.23)ES(0.201)HHGGS(0.339)PIHWVLPAGMSAK;LS(0.108)S(0.108)ES(0.091)HHGGS(0.694)PIHWVLPAGMSAK 106.39 2.56E-05 1325000000 19369.3 17696.8 32798.3 20851 16680.3 15507 15952.8 22693.8 20268.2 27753.8 TRUE FALSE 19640.52996 19628.99647 24517.96352 19513.71019 18952.43926 18256.94872 18979.76052 20765.82004 22215.05117 22097.56033 0.888809881 0.888287946 1.109532598 0.883070796 0.857671118 0.826197483 0.85890751 0.939733606 1.005316915 1 14.43159948 -8.624771558 3.842542143 1.002355868 0.90361981 0.228995968 0.073158635 0.386554081 10.40997353 0.062351267 0.020732569 2.37E-09 8.624771558 -0.098736058 LSSETGGMGS(ph)S ddPTM_K562_Paclitaxel_30min_R1 1 LSSETGGMGSS 11 0 H3BSS4;Q15366-6;Q15366-3;Q15366;Q15366-2;H3BRU6;F8VZX2;Q15366-7;Q15366-8;Q15366-4;Q15366-5 H3BSS4 PCBP2 Poly(rC)-binding protein 2 1 LSSETGGMGS(0.593)S(0.407) 108.7 0.0057332 13443000 2517.6 2824.2 3330.4 3332.9 2404.2 2368.3 2271.8 2517.2 2442.7 3376.6 TRUE FALSE 2552.854167 3132.555707 2489.59933 3119.142712 2731.692743 2788.284752 2702.86219 2303.348148 2677.332249 2688.447067 0.949564602 1.165191514 0.926036209 1.16020239 1.016085746 1.03713582 1.005361878 0.856757857 0.995865711 1 11.39255735 -8.022967694 7.646791113 0.941824008 1.044869946 0.20134283 0.08088163 0.276488092 72.36500526 0.034176165 0.020570435 9.48E-09 8.022967694 0.103045939 LSSGDPSTSPSLSQTT(ph)PSKDTDDQSR ddPTM_K562_Paclitaxel_30min_R1 1 LSSGDPSTSPSLSQTTPSKDTDDQSR 26 1 Q99504-2;Q99504-4;Q99504-5;Q99504-3;Q99504 Q99504-2 EYA3 Eyes absent homolog 3 1 LSSGDPS(0.015)T(0.015)S(0.076)PS(0.076)LS(0.053)QT(0.053)T(0.471)PS(0.236)KDT(0.005)DDQSR 82.169 0.00046316 16163000 1990 1419.7 3373.1 2221.9 1569.7 1023 1527.7 2410.7 1925.2 2648.5 TRUE FALSE 2017.86614 1574.707647 2521.519187 2079.397279 1783.519715 1204.414686 1817.5731 2205.895988 2110.124062 2108.734246 0.956908697 0.746754908 1.195750101 0.986087878 0.845777375 0.571155274 0.861926107 1.046075859 1.000659076 1 11.04216158 -8.258369681 24.60800428 1.017525606 0.878407941 0.140889675 0.152624788 467.7323806 3749589.055 0.082168443 0.044726412 5.52E-09 8.258369681 -0.139117665 LSSLSLS(ph)PANHENQPSEGER ddPTM_K562_Paclitaxel_30min_R1 4 LSSLSLSPANHENQPSEGER 20 0 G8JLP4;Q9Y4F3-3;Q9Y4F3-4;Q9Y4F3-5;Q9Y4F3 G8JLP4 KIAA0430 Meiosis arrest female protein 1 1 LS(0.001)S(0.001)LS(0.344)LS(0.654)PANHENQPSEGER;LS(0.006)S(0.006)LS(0.092)LS(0.896)PANHENQPSEGER;LS(0.001)S(0.001)LS(0.032)LS(0.965)PANHENQPS(0.002)EGER;LSS(0.001)LS(0.057)LS(0.936)PANHENQPS(0.005)EGER 107.75 0.0002253 96232000 2631.65 2858.86 3885 3594.24 2774.34 2437.15 2966.46 3361.86 3122.47 4099.4 TRUE FALSE 2668.501219 3171.000003 2904.183701 3363.721534 3152.252078 2869.344333 3529.330299 3076.249009 3422.397195 3263.94003 0.817570542 0.971525204 0.889778511 1.030570875 0.965781249 0.879104489 1.081309787 0.942495567 1.048547818 1 11.67239883 -3.856654338 0.651164269 0.990560316 6.33E-25 0.396242415 0.060836012 18.64949867 1.435312432 0.024743234 20.65677691 0.000139106 3.856654338 -0.990560316 LSSS(ph)PPRASPVR ddPTM_K562_Paclitaxel_30min_R1 1 LSSSPPRASPVR 12 1 Q9Y2K6 Q9Y2K6 USP20 Ubiquitin carboxyl-terminal hydrolase 20 1 LS(0.001)S(0.005)S(0.955)PPRAS(0.039)PVR 79.744 0.022335 0 1987.1 1589.2 2649.5 1987.3 1274.8 1545.4 1461.1 1837.7 3827.8 1889.3 TRUE FALSE 2014.925531 1762.71423 1980.600956 1859.843473 1448.449343 1819.454992 1738.336098 1681.575914 4195.477293 1504.259623 1.339479901 1.17181516 1.316661649 1.236384627 0.962898505 1.209535218 1.155609092 1.117876122 2.78906462 1 10.55483787 LSSS(ph)PPSGSGGGGGASSSSHCSGESQCR ddPTM_K562_Paclitaxel_30min_R1 4 LSSSPPSGSGGGGGASSSSHCSGESQCR 28 0 Q9Y4X0-2;Q9Y4X0-3;Q9Y4X0 Q9Y4X0-2 AMMECR1 AMME syndrome candidate gene 1 protein 1 LS(0.003)S(0.05)S(0.885)PPS(0.05)GS(0.011)GGGGGASSSSHCSGESQCR;LS(0.015)S(0.174)S(0.789)PPS(0.022)GSGGGGGASSSSHCSGESQCR;LS(0.014)S(0.077)S(0.436)PPS(0.395)GS(0.077)GGGGGAS(0.001)SSSHCSGESQCR;LS(0.065)S(0.212)S(0.704)PPS(0.012)GS(0.008)GGGGGASSSSHCSGESQCR 175.83 1.51E-37 208706000 2317.38 2373.37 3636.92 2700.61 2756.09 2482.56 2256.299 2767.58 2511.68 2755.27 TRUE FALSE 2349.83047 2632.502563 2718.734565 2527.404962 3131.516119 2922.807159 2684.419957 2532.456804 2752.938086 2193.744462 1.071150497 1.200004198 1.239312332 1.152096339 1.427475339 1.332337111 1.223670306 1.154399178 1.25490372 1 11.09917977 -10.22887285 0.911198116 0.994378872 1.234764129 0.34359818 0.094151992 15.944993 10.30394315 0.441668348 0.031845476 5.90E-11 10.22887285 0.240385257 LSSS(ph)VSAMR ddPTM_K562_Paclitaxel_30min_R1 1 LSSSVSAMR 9 0 E3W994;J3KR49;O75122;E7ERI8;E7EW49;O75122-3;A0A0U1RQI6;H7C4M5 E3W994 CLASP2 CLIP-associating protein 2 1 LS(0.003)S(0.106)S(0.891)VSAMR 121.6 0.0024296 11317000 1009.5 911.16 1135.1 737.86 624.78 686.04 721.87 733.39 922.77 1007.2 TRUE FALSE 1023.636115 1010.64353 848.5299663 690.5369621 709.8856136 807.6995615 858.8410641 671.0839418 1011.406182 801.9320871 1.276462348 1.260260746 1.058107014 0.861091573 0.885219116 1.007191974 1.070964833 0.836833882 1.261211763 1 9.647336255 -5.831299694 3.659990634 0.980690668 1.274578642 0.475920785 0.115192258 0.174417655 4.584585752 0.029879711 0.073367749 1.47E-06 5.831299694 0.293887974 LSSS(ph)WESLQPEPSHPY ddPTM_K562_Paclitaxel_30min_R1 2 LSSSWESLQPEPSHPY 16 0 P11277 P11277 SPTB "Spectrin beta chain, erythrocytic" 1 LSS(0.04)S(0.953)WES(0.007)LQPEPSHPY;LS(0.015)S(0.082)S(0.538)WES(0.365)LQPEPSHPY 313.32 1.47E-228 222730000 1984.12 2102.78 3300.9 2691.7 2090.57 2021.36 2047.96 2662.8 2379.26 2584.47 TRUE FALSE 2011.903802 2332.368632 2467.54697 2519.06641 2375.341028 2379.819815 2436.549719 2436.578519 2607.798554 2057.753595 0.977718521 1.1334538 1.199145989 1.224182728 1.154336959 1.156513501 1.184082353 1.184096349 1.267303607 1 11.00685452 -5.290707946 2.880777186 1.178767746 0.949426237 0.430703795 0.065985493 0.313279861 3.845482004 0.015732727 0.16205491 5.12E-06 5.290707946 -0.229341508 LSSSDRYS(ph)DASDDS(ph)FSEPR ddPTM_K562_Paclitaxel_30min_R1 1 LSSSDRYSDASDDSFSEPR 19 1 Q9NRF8 Q9NRF8 CTPS2 CTP synthase 2 2 LSS(0.002)S(0.016)DRY(0.085)S(0.603)DAS(0.583)DDS(0.693)FS(0.017)EPR 98.443 0.011795 12711000 881.27 830.8 1149.4 898.79 528.2 876.2 680.04 951.06 904.59 1034.7 TRUE FALSE 893.610499 921.5095536 859.2197544 841.1456322 600.1497825 1031.581768 809.07404 870.2615167 991.4799113 823.827572 1.084705743 1.118570906 1.042960667 1.021021462 0.728489556 1.252181649 0.982091481 1.056363669 1.203504162 1 9.686198601 -9.81179513 12.42316903 0.999969088 1.049157273 0.013294009 0.133914661 0 0 0.127978013 0.031039227 1.54E-10 9.81179513 0.049188185 LSSSPPRAS(ph)PVR ddPTM_K562_Paclitaxel_30min_R1 1 LSSSPPRASPVR 12 1 Q9Y2K6 Q9Y2K6 USP20 Ubiquitin carboxyl-terminal hydrolase 20 1 LSSSPPRAS(1)PVR 97.452 0.0077117 46962000 1770.1 1763.1 2685.3 1861 1760 1704.5 1663.1 2447.3 1921.3 2294 TRUE FALSE 1794.886861 1955.60122 2007.362804 1741.64379 1999.741797 2006.769143 1978.664543 2239.386589 2105.84945 1826.481541 0.982701889 1.07069312 1.099032626 0.953551268 1.094860119 1.098707596 1.083320307 1.226065821 1.152954138 1 10.83485146 -7.344453517 1.589456208 1.134752615 1.036111527 0.228403528 0.067699466 0.50912701 2.561571165 0.03035822 0.025881481 4.52E-08 7.344453517 -0.098641088 LSSSSATLLNS(ph)PDR ddPTM_K562_Paclitaxel_30min_R1 1 LSSSSATLLNSPDR 14 0 A0A087WZ40;Q14244-5;Q14244-3;Q14244-6;Q14244;Q14244-7 A0A087WZ40 MAP7 Ensconsin 1 LSSSSATLLNS(1)PDR 142.19 8.05E-06 24849000 801.62 685.33 699.07 769.12 507.06 430.59 416.72 576.61 325.53 517.87 TRUE FALSE 812.8451532 760.156647 522.5811325 719.7920857 576.1301566 506.9490907 495.7904446 527.6233814 356.798611 412.3278097 1.97135661 1.843573557 1.2673924 1.745679211 1.397262428 1.229480716 1.202418156 1.279621139 0.865327544 1 8.687647958 -2 0.201015755 0.89878786 6.152196978 0.766221894 0.166431283 24.57504006 0.297579699 0.300307074 40.7435472 0.01 2 5.253409118 LSSSSATLLNS(ph)PDRAR ddPTM_K562_Paclitaxel_30min_R1 1 LSSSSATLLNSPDRAR 16 1 A0A087WZ40;Q14244-5;Q14244-3;Q14244-6;Q14244;Q14244-7 A0A087WZ40 MAP7 Ensconsin 1 LSSSSATLLNS(1)PDRAR 226.06 2.85E-30 21637000 3548.5 2883.6 3738.9 3222.4 2469.4 2303.1 1825.7 2260 1705.6 1946.9 TRUE FALSE 3598.189948 3198.4412 2794.968453 3015.729687 2805.774087 2711.522448 2172.117044 2067.998894 1869.430501 1550.120711 2.321232096 2.063349761 1.803065034 1.945480545 1.810035868 1.749233094 1.401256708 1.334088938 1.205990274 1 10.59816485 -7.442576126 0.348827304 0.930903063 2.345940031 0.936422782 0.099177926 0.418394475 0.113315998 0.12901401 0.217661643 3.61E-08 7.442576126 1.415036969 up LSST(ph)PPLSALGR ddPTM_K562_Paclitaxel_30min_R1 2 LSSTPPLSALGR 12 0 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 1 LSS(0.03)T(0.962)PPLS(0.008)ALGR;LSS(0.01)T(0.832)PPLS(0.158)ALGR 151.55 0.002149 26874000 7451.5 6837.6 8782.8 7779.9 7185.7 7108.2 6512.4 7687.4 7147.5 8390.9 TRUE FALSE 7555.84399 7584.152291 6565.473516 7280.932036 8164.513995 8368.739466 7748.093903 7034.307387 7834.049311 6680.829974 1.130973849 1.135211092 0.982733214 1.089824477 1.222080793 1.252649671 1.159750201 1.052909206 1.172616178 1 12.70581163 LSSTPPLS(ph)ALGR ddPTM_K562_Paclitaxel_30min_R1 1 LSSTPPLSALGR 12 0 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 1 LSS(0.006)T(0.216)PPLS(0.778)ALGR 130.15 0.0008317 106480000 2262.4 2118.1 3282.9 2509.6 2470.7 2360.6 2537.2 2858.7 2662.2 3344.2 TRUE FALSE 2294.08058 2349.361321 2454.091293 2348.645489 2807.251169 2779.219266 3018.620455 2615.835592 2917.916205 2662.650204 0.861577903 0.882339452 0.921672433 0.882070609 1.054307158 1.043779337 1.133690205 0.982418039 1.095869146 1 11.3786472 -6.762951946 24.99840004 1.054503982 0.889070914 0.781692645 0.042634144 17.37898177 287226.5982 0.012420452 0.014848209 1.73E-07 6.762951946 -0.165433068 LSSWDQAETPGHT(ph)PSLR ddPTM_K562_Paclitaxel_30min_R1 1 LSSWDQAETPGHTPSLR 17 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 LSSWDQAETPGHT(0.674)PS(0.326)LR 83.436 0.012487 14367000 806.79 453.41 683.17 601.97 642.54 596.27 606.88 960.29 478.38 874.07 TRUE FALSE 818.0875492 502.9148371 510.6952842 563.3623385 730.0648263 702.0101125 722.0323119 878.7073706 524.3305365 695.9340542 1.175524526 0.72264726 0.733827122 0.809505348 1.049043112 1.008730796 1.03750105 1.262630224 0.753419858 1 9.442806794 -6.764195672 24.99999955 1.03214188 0.841499067 0.175065533 0.164627464 106.6484151 967320.0817 0.049146069 0.058245071 1.72E-07 6.764195672 -0.190642814 LST(ph)HSPFR ddPTM_K562_Paclitaxel_30min_R1 2 LSTHSPFR 8 0 P11171;P11171-7;A0A2R8YCW8;A0A2R8Y5G2;A0A2R8Y5Z6;P11171-2;A0A2U3TZH6;P11171-3;P11171-4;A0A3B3IU06;A0A2R8YD30;P11171-5;A0A2R8Y570;A0A2R8Y6G5;A0A2R8Y420;A0A3B3IUD6;A0A2R8YFR9;Q4VB86;A0A2R8Y7N0;A0A2R8Y7Y3;A0A2R8Y4N6;P11171-6;A0A2R8Y5C8;A0A2R8Y6D0;A0A1B0GWG0;A0A2R8Y783 P11171 EPB41 Protein 4.1 1 LS(0.385)T(0.615)HSPFR;LS(0.019)T(0.933)HS(0.048)PFR 105.98 0.012405 97156800 7719.1 7293.5 10279.9 9025.3 7522 7993 8358.7 9982.3 8221.4 12560.3 TRUE FALSE 7827.191215 8089.828995 7684.612105 8446.457654 8546.623749 9410.446323 9944.71969 9134.241307 9011.102204 10000.50397 0.782679677 0.808942132 0.768422485 0.8446032 0.854619305 0.940997209 0.994421854 0.9133781 0.90106481 1 13.28778508 -6.957153968 1.601020487 0.948862149 0.791577949 0.823175128 0.033011591 0.158218899 0.830310845 0.013142221 0.015096556 1.10E-07 6.957153968 -0.157284201 LST(ph)PPPLAEEEGLASR ddPTM_K562_Paclitaxel_30min_R1 1 LSTPPPLAEEEGLASR 16 0 P16157-14;P16157-10;P16157-12;P16157-21;P16157;P16157-3;P16157-16;P16157-5;P16157-8;P16157-13;P16157-4;P16157-7;P16157-6;P16157-9;P16157-11;P16157-15;H0YBS0;P16157-2 P16157-14 ANK1 Ankyrin-1 1 LS(0.029)T(0.971)PPPLAEEEGLASR 110.35 0.0034011 0 919.72 835.89 1206 842.74 853.79 709.97 810.04 1136.9 822.92 940.66 TRUE FALSE 932.5989176 927.155297 901.5303844 788.6904284 970.0906528 835.873211 963.7408613 1040.313249 901.9651429 748.9529757 1.245203568 1.23793526 1.203720946 1.05305734 1.295262432 1.116055665 1.286784208 1.389023453 1.204301434 1 9.548731329 -7.792522566 24.9965414 1.252445879 1.192894506 0 0.112560803 647.3777132 520603.6178 0.045318347 0.030556898 1.61E-08 7.792522566 -0.059551373 LSTHS(ph)PFR ddPTM_K562_Paclitaxel_30min_R1 3 LSTHSPFR 8 0 P11171;P11171-7;A0A2R8YCW8;A0A2R8Y5G2;A0A2R8Y5Z6;P11171-2;A0A2U3TZH6;P11171-3;P11171-4;A0A3B3IU06;A0A2R8YD30;P11171-5;A0A2R8Y570;A0A2R8Y6G5;A0A2R8Y420;A0A3B3IUD6;A0A2R8YFR9;Q4VB86;A0A2R8Y7N0;A0A2R8Y7Y3;A0A2R8Y4N6;P11171-6;A0A2R8Y5C8;A0A2R8Y6D0;A0A1B0GWG0;A0A2R8Y783 P11171 EPB41 Protein 4.1 1 LST(0.002)HS(0.997)PFR;LSTHS(0.999)PFR;LS(0.003)T(0.031)HS(0.967)PFR 121.36 0.0028087 288965000 13380.1 12647.2 17337.2 14986.7 12060.7 11670.2 11493 14076.2 11954.5 15439.7 TRUE FALSE 13567.46268 14028.06407 12960.20944 14025.52014 13703.57153 13739.74611 13673.73675 12880.33895 13102.78314 12293.08066 1.103666611 1.141134956 1.05426864 1.140928017 1.1147386 1.117681278 1.112311643 1.04777145 1.065866522 1 13.58555888 -8.775970699 1.003352147 1.003971642 1.113766539 0.652218285 0.025714822 0.295293464 0.63135462 0.023368569 0.008084356 1.68E-09 8.775970699 0.109794898 LSTPDVVS(ph)PFGTPFGSSVMNR ddPTM_K562_Paclitaxel_30min_R1 1 LSTPDVVSPFGTPFGSSVMNR 21 0 Q9BTX1-4;Q9BTX1-5;Q9BTX1-2;Q9BTX1;Q9BTX1-6 Q9BTX1-4 NDC1 Nucleoporin NDC1 1 LST(0.002)PDVVS(0.996)PFGT(0.001)PFGSSVMNR 149.24 6.20E-18 9977700 1127.3 960.9 1374.6 1191.4 1155.3 1163.5 1122.1 1384.4 1034.3 1410.7 TRUE FALSE 1143.085678 1065.814312 1027.565229 1114.988937 1312.671419 1369.830389 1335.012617 1266.786579 1133.649136 1123.198566 1.017705785 0.948909965 0.914856251 0.992690848 1.168690434 1.219579895 1.188581127 1.127838494 1.009304295 1 10.13339728 -6.669960718 5.183974484 1.133600918 0.959063068 0.513040859 0.071266162 0.158479277 6.964871322 0.022048389 0.028485627 2.14E-07 6.669960718 -0.17453785 LSTTPSPT(ph)SSLHEDGVEDFRR ddPTM_K562_Paclitaxel_30min_R1 1 LSTTPSPTSSLHEDGVEDFRR 21 1 C9J919;C9JNL1;O94842-3;O94842-2;O94842 C9J919 TOX4 TOX high mobility group box family member 4 1 LST(0.001)T(0.003)PS(0.104)PT(0.772)S(0.104)S(0.016)LHEDGVEDFRR 90.654 0.00036759 16494000 779.17 976.56 1203.8 722.57 695.71 803.29 679.24 833.46 588.04 959.25 TRUE FALSE 790.0807839 1083.184123 899.8858016 676.2275943 790.4774805 945.7422027 808.1222441 762.6523707 644.5238694 763.7543235 1.034469802 1.418236323 1.178239879 0.885399367 1.034989206 1.238280653 1.058091875 0.99855719 0.843888996 1 9.576964832 -6.512971089 0.375675596 0.950439789 1.280308536 0.221183634 0.142061687 3.88591805 0.845709092 0.153266776 0.53498774 3.07E-07 6.512971089 0.329868747 LSVALDGGRS(ph)PDVLSLESR ddPTM_K562_Paclitaxel_30min_R1 1 LSVALDGGRSPDVLSLESR 19 1 Q66GS9 Q66GS9 CEP135 Centrosomal protein of 135 kDa 1 LSVALDGGRS(0.999)PDVLS(0.001)LESR 87.157 0.0020801 10424000 995.78 861.33 1247.8 1077.6 921.77 987.49 874.11 1112.5 958.03 1184.6 TRUE FALSE 1009.723992 955.3729222 932.7774574 1008.487559 1047.33068 1162.607486 1039.967809 1017.986181 1050.053062 943.1778698 1.07055522 1.012929748 0.988973011 1.069244298 1.110427538 1.232649242 1.102621088 1.079315168 1.113313931 1 9.881386058 -6.564485507 3.573171577 1.116101165 1.023215983 0.28625625 0.056798308 0.265883275 7.102780433 0.017431981 0.023973036 2.73E-07 6.564485507 -0.092885182 LSVPT(ph)S(ph)DEEDEVPAPKPR ddPTM_K562_Paclitaxel_30min_R1 1 LSVPTSDEEDEVPAPKPR 18 1 Q5STZ8;Q8NE71;Q8NE71-2;F5GYK6 Q5STZ8 ABCF1 ATP-binding cassette sub-family F member 1 2 LS(0.002)VPT(0.999)S(0.999)DEEDEVPAPKPR 101.42 0.0032509 33947000 4739.4 4189.7 7182.3 5202 3751.1 3103.2 3507.2 4872.1 7314.1 5688.1 TRUE FALSE 4805.766222 4647.145615 5369.039535 4868.367003 4262.063327 3653.508949 4172.672891 4458.184694 8016.651985 4528.862098 1.061142097 1.026117712 1.185516233 1.074964726 0.941089226 0.806716758 0.92135128 0.984394004 1.770124992 1 12.1449329 -11.27387615 4.804988631 0.999978496 1.066305913 0.005153267 0.249414571 5.76E-05 8.70E-06 0.241965026 0.058666115 5.32E-12 11.27387615 0.066327417 LSVPTS(ph)DEEDEVPAPKPR ddPTM_K562_Paclitaxel_30min_R1 6 LSVPTSDEEDEVPAPKPR 18 1 Q5STZ8;Q8NE71;Q8NE71-2;F5GYK6 Q5STZ8 ABCF1 ATP-binding cassette sub-family F member 1 1 LSVPT(0.037)S(0.963)DEEDEVPAPKPR;LSVPT(0.185)S(0.815)DEEDEVPAPKPR;LSVPT(0.04)S(0.96)DEEDEVPAPKPR;LSVPT(0.079)S(0.921)DEEDEVPAPKPR;LSVPT(0.118)S(0.882)DEEDEVPAPKPR;LSVPT(0.168)S(0.832)DEEDEVPAPKPR 243.83 3.23E-53 3606322000 17540.6 14500.2 31486.1 19550.6 14671.8 14065.9 12441 19625.5 15141.6 21828.2 TRUE FALSE 17786.22252 16083.38087 23537.04464 18296.71202 16670.34756 16560.28987 14801.6148 17958.19128 16596.01833 17379.60086 1.02339649 0.92541716 1.354291438 1.052769403 0.959190472 0.952857894 0.85166598 1.033291352 0.954913664 1 14.08510733 -6.677443918 4.587455344 0.954557316 1.10063811 0.257515627 0.109770452 0.296576121 11.25112782 0.034000093 0.043886677 2.10E-07 6.677443918 0.146080794 LSVPYVPQVTDEDRLS(ph)R ddPTM_K562_Paclitaxel_30min_R1 3 LSVPYVPQVTDEDRLSR 17 1 A0A1B0GUZ7;Q14156-3;Q14156-2;Q14156 A0A1B0GUZ7 EFR3A Protein EFR3 homolog A 1 LSVPYVPQVTDEDRLS(1)R;LSVPYVPQVT(0.001)DEDRLS(0.999)R;LSVPYVPQVT(0.001)DEDRLS(0.999)R 199.75 1.37E-13 157411600 4963.1 4897.28 5162.93 5467.55 4199.14 4258.36 5094.01 5876.6 5670.7 6522.4 TRUE FALSE 5032.598712 5431.981592 3859.484467 5116.885815 4771.13396 5013.520356 6060.571805 5377.346149 6215.396072 5193.1313 0.969087516 1.045993501 0.743190234 0.985318013 0.918739328 0.965413749 1.16703612 1.035472789 1.196849398 1 12.34238899 -7.639205952 5.734662865 1.101991525 0.932337032 0.438878474 0.090161699 0.194820674 9.030145475 0.034013036 0.026092968 2.30E-08 7.639205952 -0.169654493 LSVQSNPS(ph)PQLR ddPTM_K562_Paclitaxel_30min_R1 1 LSVQSNPSPQLR 12 0 E9PBY7;E9PQ61;O75152;A0A1W2PPR9 E9PBY7 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 LSVQSNPS(1)PQLR 132.31 0.0006372 107970000 1620.6 1300.1 1684.7 1459 1299.8 1105 1218.6 1795.8 1291 1644 TRUE FALSE 1643.2934 1442.049315 1259.376649 1365.42627 1476.854766 1300.956235 1449.822988 1643.235581 1415.006318 1308.951898 1.255426882 1.101682436 0.962125997 1.043144727 1.128272757 0.993891554 1.107621289 1.25538271 1.081022397 1 10.35419637 -7.998099226 24.992448 1.137221935 1.074598826 0.001034352 0.096133541 168.5769648 2216518.497 0.040604965 0.027154638 1.00E-08 7.998099226 -0.062623109 LSYLPATVEPASPT(ph)PAHSLPR ddPTM_K562_Paclitaxel_30min_R1 2 LSYLPATVEPASPTPAHSLPR 21 0 E9PCV4;M0R344;Q9NRA0-4;Q9NRA0-2;Q9NRA0;Q9NRA0-5 E9PCV4 SPHK2 Sphingosine kinase 2 1 LSYLPATVEPAS(0.04)PT(0.947)PAHS(0.013)LPR;LSYLPATVEPAS(0.071)PT(0.928)PAHS(0.001)LPR 198.73 4.77E-26 78854000 5763.8 4900.9 6641.1 6021.6 4890.4 5106.1 5037.9 5829.1 5390.5 6789.1 TRUE FALSE 5844.510983 5435.996836 4964.472169 5635.401528 5556.555275 6011.595142 5993.815225 5333.881571 5908.28161 5405.477693 1.081220072 1.005645966 0.918415069 1.042535341 1.027948979 1.112130228 1.108840988 0.986754894 1.093017481 1 12.4002064 -6.703873186 2.75695009 1.061297631 1.001085022 0.142688571 0.054735688 0.462636436 7.162778365 0.017752938 0.02310177 1.98E-07 6.703873186 -0.060212609 LT(ph)ALLGQPRPGPARRPY(ph)AGGAAQES(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 LTALLGQPRPGPARRPYAGGAAQESK 26 3 P49748-2 P49748-2 3 LT(1)ALLGQPRPGPARRPY(1)AGGAAQES(1)K 48.219 0.01481 51660000 1594.6 1717.1 2600.3 1763.4 1473.1 1548.4 1843.3 2028.4 1803.8 2302 TRUE FALSE 1616.92932 1904.578785 1943.822105 1650.303417 1673.76116 1822.986999 2193.056552 1856.074759 1977.06305 1832.851136 0.882193479 1.039134465 1.060545544 0.900402321 0.91320082 0.994618146 1.196527371 1.012670763 1.078681738 1 10.8398739 -7.5403288 24.99367096 1.076246877 0.964716542 0.349392008 0.072560529 283.6143724 406216.6863 0.027972813 0.02167225 2.88E-08 7.5403288 -0.111530335 LT(ph)DNQT(ph)STMIRAT(ph)ARS(ph)APDR ddPTM_K562_Paclitaxel_30min_R1 1 LTDNQTSTMIRATARSAPDR 20 2 Q9UKV8-2;Q9UKV8 Q9UKV8-2 AGO2 Protein argonaute-2 4 LT(0.984)DNQT(0.807)S(0.383)T(0.464)MIRAT(0.681)ARS(0.681)APDR 48.288 0.023958 4481000 143.12 64.432 447.56 203.46 221.41 224.15 219.03 195.7 306.07 420.25 TRUE FALSE 145.1241216 71.46690366 334.5679426 190.4109863 251.5697905 263.8998553 260.5897991 179.0740635 335.4693911 334.6028193 0.433720558 0.213587273 0.999895767 0.569065696 0.751845998 0.788695851 0.778803357 0.535183965 1.002589852 1 8.386305791 -5.752408248 24.99952183 0.77506559 0.323653786 0.56552926 0.166691057 133.0278607 368233.3037 0.039682558 0.101783126 1.77E-06 5.752408248 -0.451411803 LT(ph)GLGQSNAALR ddPTM_K562_Paclitaxel_30min_R1 1 LTGLGQSNAALR 12 0 Q08378;Q08378-2 Q08378 GOLGA3 Golgin subfamily A member 3 1 LT(1)GLGQSNAALR 122.39 0.0020589 29541000 2547.1 2144.3 3281.7 2497.2 1960.7 1948.3 2591.5 3183.3 2301 3540.1 TRUE FALSE 2582.767258 2378.421926 2453.194247 2337.040769 2227.780535 2293.80365 3083.223596 2912.858795 2522.021331 2818.625677 0.916321482 0.843823266 0.870351203 0.829141943 0.790378287 0.813802155 1.093874799 1.033432293 0.89476987 1 11.46077618 -7.748949059 24.9998171 1.008305271 0.842052238 0.669689186 0.055558654 134.40677 269020.1627 0.022000174 0.016918575 1.78E-08 7.748949059 -0.166253032 LT(ph)HNDIVATT(ph)Y(ph)LSMS(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 LTHNDIVATTYLSMSK 16 0 O75923-15;O75923-3;O75923-9;O75923;O75923-14;O75923-6;O75923-12;O75923-5;O75923-11;O75923-4;O75923-10;O75923-2;O75923-8;O75923-7;O75923-13 O75923-15 DYSF Dysferlin 4 LT(1)HNDIVAT(0.227)T(0.879)Y(0.851)LS(0.051)MS(0.991)K 73.953 0.012712 30926000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 LT(ph)NVTRPT(ph)GVVT(ph)SLHREMEK ddPTM_K562_Paclitaxel_30min_R1 1 LTNVTRPTGVVTSLHREMEK 20 2 F8VNQ3;G3V106;Q9NT68-2;Q9NT68 F8VNQ3 TENM2 "Teneurin-2;Ten-2, soluble form;Ten-2 intracellular domain" 3 LT(0.843)NVT(0.26)RPT(0.893)GVVT(0.52)S(0.485)LHREMEK 48.115 0.023078 15857000 0 0 157.93 0 51.325 153.27 0 124.64 235.68 127.16 TRUE FALSE 0 0 118.0586182 0 58.31633394 180.4502825 0 114.051054 258.318117 101.2447222 0 0 1.166071828 0 0.575993816 1.782317918 0 1.126488883 2.551423041 1 6.661702893 -7.25044056 0.525249457 1.528540406 0.092854905 0.321392914 0.685227309 1.286457489 0.761019857 0.613448485 0.784282542 5.62E-08 7.25044056 -1.435685501 LT(ph)QYHGGSLPNVSQLR ddPTM_K562_Paclitaxel_30min_R1 1 LTQYHGGSLPNVSQLR 16 0 Q6UUV7;Q6UUV7-3;H0YK33 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 LT(0.942)QYHGGS(0.048)LPNVS(0.01)QLR 184.48 7.96E-10 55450000 1356.6 1494.2 1405.4 1425.5 1071.7 1102.5 1137.8 1585.5 1509.8 1780.8 TRUE FALSE 1375.596585 1657.341809 1050.589388 1334.07481 1217.683684 1298.012895 1353.69161 1450.801879 1654.823036 1417.871982 0.970183911 1.168893828 0.740962091 0.940899338 0.858810738 0.915465508 0.95473472 1.023224873 1.167117382 1 10.46951156 -8.371044021 3.029300082 1.085798317 0.932678438 0.239400121 0.107118634 0.383966897 6.638583314 0.072021888 0.029699737 4.26E-09 8.371044021 -0.153119879 LT(ph)RTSGETTQTHTEPTGDSK ddPTM_K562_Paclitaxel_30min_R1 1 LTRTSGETTQTHTEPTGDSK 20 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 LT(0.286)RT(0.286)S(0.286)GET(0.022)T(0.022)QT(0.097)HTEPTGDSK 69.975 0.015937 18843000 2702.9 2559.9 4720 3189.6 2514.9 2523.8 2267.3 2464 3108.6 3424.7 TRUE FALSE 2740.748939 2839.398539 3528.377624 2985.033332 2857.471958 2971.360494 2697.508339 2254.66782 3407.19492 2726.74426 1.005136044 1.041314575 1.2939892 1.094724348 1.047942779 1.089710002 0.989278085 0.826871758 1.24954693 1 11.41296368 -7.349902866 1.736400988 1.007020442 1.110895333 0.081017809 0.120907497 0.821833971 4.907140773 0.053278655 0.045549614 4.47E-08 7.349902866 0.103874891 LTAT(ph)PTPLGGMTGFHMQTEDR ddPTM_K562_Paclitaxel_30min_R1 2 LTATPTPLGGMTGFHMQTEDR 21 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 LT(0.017)AT(0.491)PT(0.491)PLGGMTGFHMQTEDR;LT(0.021)AT(0.489)PT(0.489)PLGGMTGFHMQTEDR 163.53 6.58E-18 69946000 3327.8 2819.5 3305.3 2933.6 2396.4 2133.9 2429.2 3361.4 3503.4 3634.4 TRUE FALSE 3374.399467 3127.342545 2470.836136 2745.452026 2722.830251 2512.317204 2890.128019 3075.828089 3839.917224 2893.707285 1.166116381 1.080739079 0.853865264 0.948766325 0.94094875 0.868200186 0.998763086 1.062936844 1.326988823 1 11.49870328 -8.532863517 7.789858861 1.174572416 0.975705569 0.293014833 0.113967885 0.163124856 65.52421879 0.075160889 0.029692709 2.93E-09 8.532863517 -0.198866847 LTATPT(ph)PLGGMTGFHMQTEDR ddPTM_K562_Paclitaxel_30min_R1 2 LTATPTPLGGMTGFHMQTEDR 21 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 LT(0.004)AT(0.013)PT(0.983)PLGGMTGFHMQTEDR;LT(0.002)AT(0.006)PT(0.992)PLGGMTGFHMQTEDR 169.41 4.23E-55 6906700 2298.94 2220.19 2166.65 1970.74 1860.3 1842.89 2088.71 2547.51 3262.2 2975.58 TRUE FALSE 2331.132253 2462.597852 1619.652411 1844.345557 2113.704355 2169.700666 2485.031819 2331.083124 3575.548886 2369.155163 0.983950857 1.039441355 0.68364134 0.778482383 0.892176413 0.915811974 1.048910539 0.98393012 1.509208406 1 11.21015697 -8.18627999 1.55627698 1.22179645 0.874837156 0.403534308 0.159948578 0.40112364 1.783586968 0.120586139 0.049513569 6.51E-09 8.18627999 -0.346959294 LTCMQSCSAPVNAGPS(ph)SLASEPPGSPSTPR ddPTM_K562_Paclitaxel_30min_R1 1 LTCMQSCSAPVNAGPSSLASEPPGSPSTPR 30 0 Q96HA7-2;Q96HA7 Q96HA7-2 TONSL Tonsoku-like protein 1 LTCMQSCSAPVNAGPS(0.361)S(0.361)LAS(0.013)EPPGS(0.191)PS(0.054)T(0.021)PR 104.12 3.63E-09 33306000 809.25 852.33 1224.5 885.58 727.51 651.68 634.48 1023.1 1062.9 1183.8 TRUE FALSE 820.5819968 945.3902718 915.3598306 828.7828625 826.6091788 767.246298 754.8692678 936.181269 1164.996294 942.5409102 0.870606239 1.003023064 0.97116191 0.879307045 0.877000849 0.814019094 0.800887537 0.993252663 1.236016688 1 9.880411428 -8.533241881 8.702831466 1.117651476 0.892308038 0.578850577 0.078545964 0.1134152 66.22482124 0.052919697 0.020829044 2.93E-09 8.533241881 -0.225343437 LTCMQSCSAPVNAGPSSLASEPPGS(ph)PSTPR ddPTM_K562_Paclitaxel_30min_R1 1 LTCMQSCSAPVNAGPSSLASEPPGSPSTPR 30 0 Q96HA7-2;Q96HA7 Q96HA7-2 TONSL Tonsoku-like protein 1 LTCMQSCSAPVNAGPS(0.003)S(0.011)LAS(0.002)EPPGS(0.772)PS(0.153)T(0.06)PR 108.23 4.19E-10 31565000 670.12 492.66 784.23 703.64 733.09 634.03 605.48 778.09 641.3 861 TRUE FALSE 679.5037475 546.4502849 586.2414373 658.5116798 832.9492693 746.4663183 720.3666692 711.9863978 702.8997304 685.5277274 0.991212639 0.797123534 0.85516809 0.960590875 1.215048256 1.088892963 1.050820617 1.038596062 1.025341065 1 9.421071209 -6.528475363 24.62710347 1.073183918 0.878616254 0.595496255 0.070414737 80.33246996 353488.5369 0.021086165 0.027311678 2.96E-07 6.528475363 -0.194567664 LTEDLEYHELLDR ddPTM_K562_Paclitaxel_30min_R1 1 LTEDLEYHELLDR 13 0 P22059;H0YCV6 P22059 OSBP Oxysterol-binding protein 1 0 157.5 4.09E-41 0 3138.3 3850.3 3703 3889.7 3395 2872.2 3479.1 4377.4 3093.9 4586.7 FALSE TRUE 3182.245882 4270.688775 2768.131852 3640.232052 3857.456478 3381.544342 4139.241063 4005.512547 3391.082919 3651.928022 0.871387898 1.169433995 0.757991898 0.996797316 1.056279438 0.925961389 1.133439936 1.096821329 0.928573317 1 11.83444262 -6.513929194 24.92688627 1.028751176 0.943388723 0.110323792 0.113327679 957.4284482 2666696.38 0.031966078 0.043609632 3.06E-07 6.513929194 -0.085362453 LTEGCS(ph)FR ddPTM_K562_Paclitaxel_30min_R1 4 LTEGCSFR 8 0 H0YMV8;Q71UM5;P42677;C9J1C5 H0YMV8 RPS27L;RPS27 40S ribosomal protein S27;40S ribosomal protein S27-like 1 LTEGCS(1)FR;LTEGCS(1)FR;LTEGCS(1)FR;LTEGCS(1)FR 101.46 0.01384 465017000 16014 14804.6 19745.2 17261.6 13639.3 14202.6 13405.4 14368 12141 15652.3 TRUE FALSE 16238.24541 16421.01629 14760.28005 16154.51824 15497.20358 16721.2317 15949.00467 13147.34872 13307.1973 12462.35267 1.302983942 1.317649783 1.184389533 1.296265534 1.243521507 1.341739569 1.279774782 1.054965227 1.067791745 1 13.60528883 -8.2686568 6.133162071 1.044267613 1.280471926 0.864012006 0.043637083 0.05396955 9.51490561 0.023028605 0.0117507 5.39E-09 8.2686568 0.236204313 LTFDT(ph)TFSPNTGKK ddPTM_K562_Paclitaxel_30min_R1 1 LTFDTTFSPNTGKK 14 1 Q5JSD2;Q5JSD1;A0A0A0MR02;P45880-2;P45880;P45880-1 Q5JSD2 VDAC2 Voltage-dependent anion-selective channel protein 2 1 LTFDT(0.61)T(0.192)FS(0.192)PNT(0.006)GKK 113.37 0.0089569 18398000 2716.2 1960.4 6097.8 3177.9 2365.3 1281.6 1923.8 3270.8 2772.5 4627.1 TRUE FALSE 2754.23518 2174.443102 4558.334973 2974.083718 2687.493905 1508.873765 2288.831007 2992.925124 3038.811013 3684.09448 0.747601668 0.590224576 1.237301323 0.807276723 0.729485609 0.409564351 0.6212737 0.81239098 0.824846113 1 11.84709435 LTFDTTFS(ph)PNTGKK ddPTM_K562_Paclitaxel_30min_R1 1 LTFDTTFSPNTGKK 14 1 Q5JSD2;Q5JSD1;A0A0A0MR02;P45880-2;P45880;P45880-1 Q5JSD2 VDAC2 Voltage-dependent anion-selective channel protein 2 1 LTFDT(0.033)T(0.081)FS(0.86)PNT(0.026)GKK 152.07 2.46E-30 0 1957.2 1171.5 3223.6 1996.6 1342.8 893.83 1483.2 1738.1 1504.8 2298.4 TRUE FALSE 1984.606838 1299.408332 2409.762311 1868.547012 1525.712094 1052.338201 1764.629457 1590.437556 1649.342764 1829.984818 1.084493608 0.710065088 1.31682093 1.021072412 0.833729372 0.575052968 0.964286392 0.869098771 0.901287676 1 10.83761596 -6.752277799 9.283895874 0.84186746 1.03052973 0.193621798 0.174119057 0.253962985 190.6666606 0.052562958 0.065112617 1.77E-07 6.752277799 0.18866227 LTIAEER ddPTM_K562_Paclitaxel_30min_R1 1 LTIAEER 7 0 Q8TD47;P62701 Q8TD47 RPS4Y2;RPS4X "40S ribosomal protein S4, Y isoform 2;40S ribosomal protein S4, X isoform" 0 124.59 0.0083838 16191000 2799.7 2888 3396.1 3642.8 2602.1 2435 2225.3 2946.3 2748.4 3581.9 FALSE TRUE 2838.904438 3203.321607 2538.712553 3409.167113 2956.550074 2866.813061 2647.539058 2695.993425 3012.3961 2851.906814 0.995440813 1.123220994 0.890180752 1.195399196 1.036692384 1.005226765 0.92833996 0.945330125 1.056274379 1 11.47771113 -7.351055242 3.64317147 0.977302051 1.05192334 0.125944089 0.080970086 0.466996694 11.66870806 0.028982754 0.025471514 4.46E-08 7.351055242 0.074621289 LTIFGNSAVSQPASSSNHSS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 LTIFGNSAVSQPASSSNHSSR 21 0 H0Y8X6;P46934-4;P46934-3;P46934-2;P46934 H0Y8X6 NEDD4 E3 ubiquitin-protein ligase NEDD4 1 LTIFGNSAVSQPAS(0.014)S(0.014)S(0.014)NHS(0.274)S(0.683)R;LTIFGNSAVSQPAS(0.011)S(0.006)S(0.006)NHS(0.072)S(0.905)R 118.09 1.19E-05 32282000 1621.1 1626.42 1846.44 1973.59 1855.96 2360.6 3061.5 3163.7 2122.6 5559.5 TRUE FALSE 1643.800402 1803.998036 1380.283386 1847.012771 2108.773174 2779.219266 3642.403643 2894.923938 2326.485214 4426.470848 0.37135688 0.407547705 0.3118248 0.417265319 0.476400556 0.627863452 0.822868549 0.654002712 0.525584669 1 12.1119412 -7.200364769 1.88889904 0.7237672 0.373029392 0.673391014 0.117829006 0.217348287 1.52825709 0.046361818 0.044309672 6.30E-08 7.200364769 -0.350737808 LTLEDLEDSWDR ddPTM_K562_Paclitaxel_30min_R1 1 LTLEDLEDSWDR 12 0 Q6P2Q9;I3L3Z8 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 122.69 0.013166 4744700 563.63 419.69 746.39 627.35 729.25 577.76 664.46 644.02 464.17 776.16 FALSE TRUE 571.5225589 465.5131735 557.9546133 587.1145789 828.5861963 680.2176238 790.5378163 589.3064812 508.7556025 617.978166 0.924826459 0.753284176 0.902871079 0.950057156 1.340801734 1.100714655 1.2792326 0.953604049 0.823258216 1 9.271412056 -6.531777244 24.97559141 1.096238378 0.862429755 0.320021526 0.146589328 227.0302435 637206.5942 0.045571647 0.058918488 2.94E-07 6.531777244 -0.233808622 LTLS(ph)ES(ph)KLTSQS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 LTLSESKLTSQSR 13 1 Q66GS9 Q66GS9 CEP135 Centrosomal protein of 135 kDa 3 LTLS(1)ES(1)KLT(0.013)S(0.009)QS(0.978)R 120.21 0.0067719 12647000 1191.9 924.02 1492.1 1223.7 1083.8 1103.8 1169.4 1415.7 848.17 1376.3 TRUE FALSE 1208.590277 1024.907628 1115.400901 1145.217359 1231.431909 1299.543432 1391.287545 1295.427448 929.6405182 1095.809305 1.102920255 0.935297432 1.017878655 1.045088187 1.123764786 1.185921151 1.269643851 1.182165038 0.84835976 1 10.09778104 -6.641400257 3.315218645 1.123624627 1.012487328 0.078679797 0.115719178 0.481553402 10.41802275 0.036632324 0.048606429 2.28E-07 6.641400257 -0.111137299 LTLTSDES(ph)TLIEDGGAR ddPTM_K562_Paclitaxel_30min_R1 1 LTLTSDESTLIEDGGAR 17 0 Q9NRX5 Q9NRX5 SERINC1 Serine incorporator 1 1 LT(0.001)LT(0.067)S(0.067)DES(0.433)T(0.433)LIEDGGAR 78.249 0.019018 3735200 1541.7 1217.3 1905.6 1524.3 1272.7 1232.9 1283 1727.4 1415.9 2323.7 TRUE FALSE 1563.288557 1350.208931 1424.507712 1426.538221 1446.063287 1451.537504 1526.442552 1580.646588 1551.903521 1850.128664 0.844962076 0.729791909 0.76995062 0.771048116 0.781601472 0.784560302 0.825046702 0.854344143 0.838808431 1 10.85340989 -9.436461784 0.478637904 1.012181395 0.770044878 0.828806903 0.029359399 0.666582989 0.297335319 0.046782739 0.016125474 3.66E-10 9.436461784 -0.242136517 LTLTSDEST(ph)LIEDGGAR ddPTM_K562_Paclitaxel_30min_R1 2 LTLTSDESTLIEDGGAR 17 0 Q9NRX5 Q9NRX5 SERINC1 Serine incorporator 1 1 LTLTSDES(0.329)T(0.671)LIEDGGAR;LTLTSDES(0.18)T(0.82)LIEDGGAR 296.51 8.04E-177 50706000 3793.2 3271.4 4577.1 3965.4 3266.5 3150.3 3224.4 3602.4 3181 4165.5 TRUE FALSE 3846.316503 3628.582515 3421.554496 3711.076992 3711.452602 3708.961473 3836.213068 3296.353635 3486.549263 3316.568814 1.159727634 1.094077259 1.031654909 1.118950699 1.119063952 1.118312835 1.156681282 0.993904791 1.051251899 1 11.69547574 -8.270137513 24.98996482 1.016933754 1.110671745 0.607649086 0.036379356 482.5892428 1386482.551 0.020308705 0.009977596 5.37E-09 8.270137513 0.093737991 LTPLSHEVISR ddPTM_K562_Paclitaxel_30min_R1 2 LTPLSHEVISR 11 0 H7BZU1;Q2VIR3-2;Q2VIR3;P41091 H7BZU1 EIF2S3;EIF2S3L Putative eukaryotic translation initiation factor 2 subunit 3-like protein;Eukaryotic translation initiation factor 2 subunit 3 0 ; 166.69 0.00088962 22357000 3611.5 3655.8 4243.5 4834 3801.9 3606.6 3498.4 4583.6 3698 4462.6 FALSE TRUE 3662.072142 4054.952607 3172.175942 4523.968876 4319.783147 4246.179871 4162.203137 4194.19457 4053.209423 3553.11967 1.03066389 1.141237274 0.892786125 1.273238533 1.215771926 1.195056813 1.171422165 1.180425924 1.140746667 1 11.79487056 -6.27292476 24.99985539 1.178860951 1.033529906 0.367553066 0.086862824 731.6015231 1592451.603 0.023277018 0.034861475 5.33E-07 6.27292476 -0.145331046 LTPRPSPSPMIES(ph)TPMSIAGDATPLLDEMDR ddPTM_K562_Paclitaxel_30min_R1 1 LTPRPSPSPMIESTPMSIAGDATPLLDEMDR 31 1 Q7KZ85;Q7KZ85-3;Q7KZ85-2 Q7KZ85 SUPT6H Transcription elongation factor SPT6 1 LT(0.041)PRPS(0.037)PS(0.281)PMIES(0.319)T(0.319)PMS(0.003)IAGDATPLLDEMDR 58.11 0.0029117 5414400 251.75 213.82 298.25 165 120.6 172.72 139.62 135.3 275.46 276.6 TRUE FALSE 255.2752767 237.1655907 222.9530988 154.4176385 137.0277618 203.3494669 166.1121661 123.8054205 301.9191638 220.2287682 1.159136832 1.076905586 1.012370458 0.701169242 0.622206458 0.923355602 0.754270968 0.562167339 1.370934262 1 7.782859128 -6.048740893 4.181636203 0.819762154 1.107313003 0.197452731 0.217995253 0.303815882 11.19623785 0.058084727 0.111727174 8.94E-07 6.048740893 0.287550848 LTPRPSPSPMIESTPMS(ph)IAGDATPLLDEMDR ddPTM_K562_Paclitaxel_30min_R1 2 LTPRPSPSPMIESTPMSIAGDATPLLDEMDR 31 1 Q7KZ85;Q7KZ85-3;Q7KZ85-2 Q7KZ85 SUPT6H Transcription elongation factor SPT6 1 LTPRPS(0.002)PS(0.002)PMIES(0.022)T(0.09)PMS(0.445)IAGDAT(0.439)PLLDEMDR;LTPRPSPSPMIESTPMS(0.5)IAGDAT(0.5)PLLDEMDR 84.905 1.65E-07 37164000 955.15 1151.03 1181.86 983.76 865.46 936.63 1150.9 2011.4 1541.99 1713.66 TRUE FALSE 968.5250469 1276.703348 883.4848259 920.6660367 983.3503044 1102.72818 1369.277267 1840.519015 1690.105029 1364.415151 0.7098463 0.935714725 0.647519067 0.674769725 0.72071195 0.808205756 1.003563516 1.348943548 1.238702918 1 10.41406697 -7.904725131 2.677468489 1.2187771 0.744004914 0.766819644 0.11103274 0.12258862 1.772572089 0.054282448 0.033063147 1.25E-08 7.904725131 -0.474772186 LTPS(ph)PDIIVLSDNEASSPR ddPTM_K562_Paclitaxel_30min_R1 2 LTPSPDIIVLSDNEASSPR 19 0 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 LT(0.069)PS(0.914)PDIIVLS(0.016)DNEASS(0.001)PR;LT(0.003)PS(0.991)PDIIVLS(0.006)DNEASSPR 126.43 2.12E-06 32700000 2034.6 1873.55 2946.5 2282.6 1771.75 1959.25 1963.12 2555.4 2095.22 2556.3 TRUE FALSE 2063.090677 2078.110525 2202.619633 2136.204253 2013.092346 2306.695478 2335.611772 2338.30282 2296.475243 2035.324657 1.01364206 1.021021643 1.08219572 1.049564376 0.989076774 1.133330484 1.147537698 1.14885987 1.128309056 1 10.99104322 -7.276123929 24.78413029 1.123156812 1.034404636 0.416033993 0.046616882 640.0715067 1080288.937 0.015838744 0.014034097 5.30E-08 7.276123929 -0.088752176 LTPSPDIIVLS(ph)DNEASSPR ddPTM_K562_Paclitaxel_30min_R1 2 LTPSPDIIVLSDNEASSPR 19 0 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 LTPSPDIIVLS(0.998)DNEAS(0.001)S(0.001)PR;LTPSPDIIVLS(0.998)DNEAS(0.001)S(0.001)PR 154.74 1.02E-11 35537000 1580.31 1486.9 2348.04 1566.7 1800.64 1514.89 1288.41 1699.46 1804.74 2019.45 TRUE FALSE 1602.439216 1649.24477 1755.248262 1466.218874 2045.917653 1783.534471 1532.879072 1555.080265 1978.093341 1607.884982 0.996613087 1.025723102 1.091650387 0.911892885 1.272427864 1.109242571 0.953351197 0.967158897 1.230245548 1 10.65094849 -5.294217047 1.036048225 1.06859888 0.961671095 0.041042168 0.110827344 7.39799088 6.719144986 0.036792948 0.868114095 5.08E-06 5.294217047 -0.106927784 LTPSPDIIVLSDNEASS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 LTPSPDIIVLSDNEASSPR 19 0 A0A0U1RRM1;Q8WXI9;A0A0U1RRK3;A0A0U1RR34 A0A0U1RRM1 GATAD2B Transcriptional repressor p66-beta 1 LTPSPDIIVLS(0.007)DNEAS(0.236)S(0.757)PR;LTPSPDIIVLS(0.082)DNEAS(0.153)S(0.766)PR;LTPSPDIIVLSDNEAS(0.368)S(0.632)PR 213.64 5.02E-29 140641000 3190.9 3252.35 4278.53 3634.89 2873.65 3602.57 3461.04 4202.83 3269.42 4708.11 TRUE FALSE 3235.582445 3607.452572 3198.362185 3401.764425 3265.089781 4241.435207 4117.754272 3845.773358 3583.462399 3748.594598 0.86314547 0.962348015 0.853216346 0.907477279 0.871017043 1.131473435 1.098479487 1.025924052 0.955948238 1 11.87213409 -7.246846551 24.99130334 1.04749245 0.894147442 0.663818153 0.053622811 503.6225834 862492.1274 0.018335389 0.018255813 5.66E-08 7.246846551 -0.153345007 LTPVRPAAAS(ph)PIVSGAR ddPTM_K562_Paclitaxel_30min_R1 2 LTPVRPAAASPIVSGAR 17 1 Q9Y2K7-5;I3VM54;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7;Q9Y2K7-3 Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 LTPVRPAAAS(0.961)PIVS(0.039)GAR;LTPVRPAAAS(0.763)PIVS(0.237)GAR 117.55 0.00023994 577760000 2721.3 2686.7 3757.1 3477.3 2814.2 2308.64 2756.3 3347.6 2627.8 3598.6 TRUE FALSE 2759.406596 2980.042992 2808.573638 3254.281542 3197.541685 2718.044889 3279.293536 3063.200485 2880.211931 2865.203345 0.963075309 1.040080802 0.980235362 1.13579427 1.115991188 0.948639437 1.144523841 1.069104045 1.005238227 1 11.48442182 -6.22169482 24.99054337 1.064005525 0.999025508 0.186017786 0.062093474 906.9008206 570239.6513 0.016614926 0.028777508 6.00E-07 6.22169482 -0.064980017 LTPVS(ph)PESSSTEEK ddPTM_K562_Paclitaxel_30min_R1 4 LTPVSPESSSTEEK 14 0 E7EMC7;Q13501;Q13501-2 E7EMC7 SQSTM1 Sequestosome-1 1 LT(0.004)PVS(0.995)PES(0.001)SSTEEK;LTPVS(1)PESSSTEEK;LT(0.001)PVS(0.992)PES(0.005)S(0.003)STEEK;LTPVS(0.399)PES(0.185)S(0.399)S(0.014)T(0.004)EEK 165.89 4.75E-06 332908000 13152.9 11390.1 24141.5 14982.7 10622.4 9752.8 9953.8 14417.9 9218.2 17020.6 TRUE FALSE 13337.08118 12633.70964 18046.67975 14021.77668 12069.35072 11482.32214 11842.48159 13193.0094 10103.6493 13551.79238 0.984156251 0.932253778 1.331682131 1.034680601 0.890609182 0.84729177 0.873868287 0.973525054 0.745558153 1 13.72619606 -6.705546859 4.557124523 0.883717853 1.084035031 0.370569578 0.11707594 0.220907467 9.378978632 0.035833917 0.04576264 1.97E-07 6.705546859 0.200317178 LTPYEVDELRR ddPTM_K562_Paclitaxel_30min_R1 2 LTPYEVDELRR 11 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 ; 136.5 0.0011776 23612000 2808.7 3080.7 3870.9 2951.1 2899.3 2677.3 3062.7 3662.1 3198.5 4215.3 FALSE TRUE 2848.030466 3417.061244 2893.64342 2761.829655 3294.233746 3152.081564 3643.831337 3350.981747 3505.730216 3356.219546 0.848582885 1.018128045 0.86217346 0.822898984 0.981531065 0.939176213 1.085695166 0.998439375 1.044547345 1 11.71262138 -7.341273075 1.862764978 1.029489333 0.899608896 0.488682287 0.060287029 0.30779135 2.106613548 0.025483378 0.022033633 4.56E-08 7.341273075 -0.129880437 LTQYHGGS(ph)LPNVSQLR ddPTM_K562_Paclitaxel_30min_R1 3 LTQYHGGSLPNVSQLR 16 0 Q6UUV7;Q6UUV7-3;H0YK33 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 LTQYHGGS(1)LPNVSQLR;LT(0.002)QY(0.013)HGGS(0.984)LPNVS(0.002)QLR;LTQYHGGS(1)LPNVSQLR 279.12 6.60E-132 249274000 7660.36 7461.8 8354.6 7335.6 6757.1 6216.73 7730.6 9860.2 7788.19 11389.6 TRUE FALSE 7767.628674 8276.504558 6245.377902 6865.127449 7677.531419 7319.179778 9197.440994 9022.514465 8536.280448 9068.393268 0.856560633 0.912675963 0.688697294 0.757039009 0.846625327 0.807108775 1.014230495 0.994940801 0.94132226 1 13.14663124 -7.756607723 24.99883613 0.987201802 0.809598094 0.682472553 0.058861174 74.90412695 387553.7726 0.024679388 0.018491748 1.75E-08 7.756607723 -0.177603708 LTRDETNYGIPQR ddPTM_K562_Paclitaxel_30min_R1 1 LTRDETNYGIPQR 13 1 D6RGK8;D6R909;D6RAU2;E9PD14;D6RBD0;D6RFX4;D6RFZ9;D6RHH4;D6R9Z1;D6RAC2;D6R9L0;D6REE5;P63244 D6RGK8 GNB2L1 "Guanine nucleotide-binding protein subunit beta-2-like 1;Guanine nucleotide-binding protein subunit beta-2-like 1, N-terminally processed" 0 117.95 0.019505 19317000 1899.7 1967.3 2767.3 1818.4 1485.8 1712.8 2164.3 2673.3 1974.6 3168.9 FALSE TRUE 1926.301661 2182.096467 2068.660889 1701.775963 1688.191115 2016.541031 2574.964627 2446.186479 2164.269153 2523.076441 0.763473365 0.864855472 0.819896241 0.674484505 0.669100265 0.799238976 1.020565444 0.969525314 0.857789767 1 11.3009682 -7.653293139 5.699626735 0.958505694 0.760628223 0.669549122 0.068086792 0.141986385 6.610949831 0.029052325 0.022252278 2.22E-08 7.653293139 -0.197877471 LTS(ph)DEEGEPSGK ddPTM_K562_Paclitaxel_30min_R1 2 LTSDEEGEPSGK 12 0 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 LT(0.03)S(0.97)DEEGEPSGK;LT(0.007)S(0.993)DEEGEPSGK 164.48 0.0011558 17324800 4249.4 3578 8147.1 5129.5 3548.8 3374.3 2848.9 4841.2 3810.2 5572.8 TRUE FALSE 4308.904711 3968.65814 6090.263843 4800.516829 4032.206642 3972.684727 3389.463903 4429.909842 4176.186734 4437.060301 0.971117005 0.894434123 1.37258983 1.081913813 0.908756331 0.895341613 0.763898544 0.998388469 0.941205765 1 12.11538844 -6.757555363 8.214563418 0.908847495 1.08797389 0.267433011 0.130654071 0.161848237 90.57833573 0.041373165 0.050542416 1.75E-07 6.757555363 0.179126394 LTST(ph)PLQSHSSVEPWLDR ddPTM_K562_Paclitaxel_30min_R1 1 LTSTPLQSHSSVEPWLDR 18 0 A0A494C143;Q14689-3;Q14689-2;Q14689-4;Q14689-5;Q14689-6;Q14689 A0A494C143 DIP2A Disco-interacting protein 2 homolog A 1 LT(0.051)S(0.209)T(0.74)PLQSHSSVEPWLDR 78.419 0.012381 25466000 421.25 640.49 845.08 590.08 412.75 747.35 470.63 806.78 567.35 680.71 TRUE FALSE 427.1487997 710.4208642 631.7291022 552.2349099 468.9735379 879.8820292 559.9295856 738.2390032 621.8465025 541.9809284 0.788125149 1.310785725 1.165592863 1.018919451 0.865295278 1.623455703 1.033116769 1.362112511 1.147358643 1 9.082098276 LTTTGQVTS(ph)PVK ddPTM_K562_Paclitaxel_30min_R1 3 LTTTGQVTSPVK 12 0 P49916-4;P49916-3;P49916-2;P49916;K7ENR9;K7ERZ5 P49916-4 LIG3 DNA ligase 3 1 LTTTGQVT(0.142)S(0.858)PVK;LTTTGQVT(0.019)S(0.981)PVK;LTTTGQVT(0.087)S(0.913)PVK 170.95 0.00011113 62325000 5943.8 5000.9 10704.2 7116.1 5232.1 4548.2 4344.1 7254.9 4003.6 9149.6 TRUE FALSE 6027.031538 5546.915174 8001.792322 6659.705196 5944.8006 5354.75941 5168.370297 6638.550961 4388.163669 7284.906498 0.827331351 0.76142572 1.098407004 0.914178541 0.816043501 0.735048475 0.709462819 0.911274697 0.60236376 1 12.83069474 -6.876217424 4.407486872 0.780589476 0.904162247 0.133485269 0.129765418 0.404790906 13.68116751 0.040414665 0.046489396 1.33E-07 6.876217424 0.123572771 LTTTGQVTS(ph)PVKGASFVTSTNPR ddPTM_K562_Paclitaxel_30min_R1 1 LTTTGQVTSPVKGASFVTSTNPR 23 1 P49916-4;P49916-3;P49916-2;P49916;K7ENR9;K7ERZ5 P49916-4 LIG3 DNA ligase 3 1 LTT(0.002)T(0.005)GQVT(0.322)S(0.585)PVKGAS(0.024)FVT(0.055)S(0.005)T(0.002)NPR 71.67 0.0015655 328230000 1748.7 1505.3 2787.2 1565.5 1382.8 1376.6 1197 1505.3 1681.5 2276.1 TRUE FALSE 1773.187195 1669.653745 2083.536888 1465.095837 1571.160771 1620.720682 1424.124501 1377.415369 1843.015588 1812.229571 0.978456165 0.921325737 1.149709133 0.80844936 0.866976677 0.894324156 0.785841112 0.760066711 1.016987924 1 10.82355001 -6.286261378 24.98580864 0.862714434 1.00697993 0.303334924 0.095696203 846.6416084 852226.6758 0.026212068 0.038896587 5.17E-07 6.286261378 0.144265496 LTWHS(ph)CPEDEAQ ddPTM_K562_Paclitaxel_30min_R1 6 LTWHSCPEDEAQ 12 0 Q13185 Q13185 CBX3 Chromobox protein homolog 3 1 LTWHS(1)CPEDEAQ;LTWHS(1)CPEDEAQ;LTWHS(1)CPEDEAQ;LTWHS(1)CPEDEAQ;LT(0.001)WHS(0.999)CPEDEAQ;LTWHS(1)CPEDEAQ 171.62 0.00011756 503415000 16525.9 14961.8 17533.7 15655.54 13066.22 13145.82 15994.1 18359.8 16153.5 20213.8 TRUE FALSE 16757.31359 16595.37992 13107.10058 14651.46374 14846.06038 15477.0466 19028.89698 16800.02039 17705.11585 16094.21646 1.041200957 1.031139351 0.814398179 0.910355827 0.922446918 0.961652693 1.182343796 1.043854507 1.100091818 1 13.97425472 -7.619678332 7.962616535 1.084817995 0.939959446 0.446379684 0.073590754 0.228277186 16.57297266 0.029258258 0.022607476 2.40E-08 7.619678332 -0.144858549 LVAIVDVIDQNR ddPTM_K562_Paclitaxel_30min_R1 2 LVAIVDVIDQNR 12 0 E7EPB3;P50914 E7EPB3 RPL14 60S ribosomal protein L14 0 ; 202.96 3.87E-06 15040400 3964.8 4286.5 4539 4445.1 3844.7 3349.4 3887.9 5632.1 3951.4 5528.7 FALSE TRUE 4020.319432 4754.514566 3393.073312 4160.011182 4368.413231 3943.369062 4625.608729 5153.617951 4330.949625 4401.947905 0.913304637 1.080093329 0.770811783 0.945038713 0.992381856 0.895823655 1.050809512 1.170758505 0.983871168 1 12.10392636 -7.830917354 6.685298505 1.067320817 0.935644058 0.301685493 0.087046262 0.250865302 19.1874561 0.035872635 0.024191525 1.48E-08 7.830917354 -0.131676759 LVASLQDS(ph)SLEEEQFTAAMQTQGLR ddPTM_K562_Paclitaxel_30min_R1 1 LVASLQDSSLEEEQFTAAMQTQGLR 25 0 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 LVAS(0.005)LQDS(0.547)S(0.448)LEEEQFT(0.001)AAMQTQGLR 62.237 0.0043114 2930700 426.51 393.22 428.2 523.34 470.11 370.79 282.07 355.17 451.25 567.62 TRUE FALSE 432.4824559 436.1530894 320.0956141 489.7753148 534.146941 436.5444004 335.59131 324.9960916 494.5945787 451.9387324 0.956949305 0.965071276 0.708272142 1.083720601 1.181901224 0.965937126 0.742559303 0.719115376 1.094384135 1 8.819983395 -7.557861765 24.9202386 0.863984762 0.979632362 0.064927836 0.152782612 422.7749659 301161.3095 0.061062903 0.04729931 2.77E-08 7.557861765 0.1156476 LVDPERDMSLR ddPTM_K562_Paclitaxel_30min_R1 1 LVDPERDMSLR 11 1 G3V153;Q14444-2;Q14444 G3V153 CAPRIN1 Caprin-1 0 117.14 0.029337 17197000 3845.7 4309.6 5144.9 4951.4 4279.6 4083.5 4349.7 4049.7 3661.8 4860.5 FALSE TRUE 3899.551665 4780.136702 3846.006364 4633.839366 4862.553974 4807.65139 5175.032868 3705.652708 4013.532251 3869.927432 1.007654984 1.235200604 0.993818729 1.197396966 1.256497456 1.242310476 1.337242871 0.957550955 1.037107884 1 11.9180908 -8.286787455 24.99205849 0.997997035 1.182138109 0.400937575 0.102632403 836.6578001 824901.7896 0.057543458 0.027659876 5.17E-09 8.286787455 0.184141074 LVDVS(ph)PDRGS(ph)PPSRVPQALNFSPEESDSTFSK ddPTM_K562_Paclitaxel_30min_R1 1 LVDVSPDRGSPPSRVPQALNFSPEESDSTFSK 32 2 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 2 LVDVS(0.91)PDRGS(0.515)PPS(0.529)RVPQALNFS(0.03)PEES(0.009)DS(0.003)T(0.003)FSK 48.672 0.0040429 36726000 1851.8 1687.1 3640.9 1899.7 1963.7 1912.5 1548.7 2399.6 2320.8 2852.8 TRUE FALSE 1877.730913 1871.303283 2721.709765 1777.861745 2231.189186 2251.655022 1842.55774 2195.739002 2543.72321 2271.397794 0.826685188 0.823855376 1.198253239 0.782717034 0.982297857 0.991308096 0.811199934 0.966690647 1.119893317 1 11.14936467 -5.61417957 22.01004795 0.970449233 0.824815421 0.218390409 0.116749258 10.17236573 2442.281491 0.028846839 0.076321651 2.43E-06 5.61417957 -0.145633811 LVDVS(ph)PDRGSPPSR ddPTM_K562_Paclitaxel_30min_R1 2 LVDVSPDRGSPPSR 14 1 Q9NYZ3 Q9NYZ3 GTSE1 G2 and S phase-expressed protein 1 1 LVDVS(0.998)PDRGS(0.002)PPSR;LVDVS(0.975)PDRGS(0.001)PPS(0.024)R 198.81 1.58E-08 83620000 3610.8 2905.3 4155.9 3638.8 3212.7 3246.5 3517.8 4175.8 2942.8 3915.2 TRUE FALSE 3661.36234 3222.510479 3106.691645 3405.423655 3650.324131 3822.221192 4185.284186 3821.039725 3225.469089 3117.280091 1.174537492 1.033757117 0.996603306 1.092434287 1.170996518 1.226139802 1.342607678 1.225760796 1.034706217 1 11.60607207 -6.737572183 3.534464883 1.191397861 1.062410737 0.142477123 0.102168828 0.342448237 8.988031656 0.032518302 0.040845216 1.83E-07 6.737572183 -0.128987124 LVEPHS(ph)PSPSSK ddPTM_K562_Paclitaxel_30min_R1 2 LVEPHSPSPSSK 12 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 LVEPHS(0.895)PS(0.08)PS(0.024)S(0.001)K;LVEPHS(0.986)PS(0.01)PS(0.003)S(0.001)K 91.076 0.012592 142191000 8470.7 7286.7 12733 8662.2 7003 6744.2 6272.6 9084.4 8349.4 10238.1 TRUE FALSE 8589.315934 8082.286548 9518.39667 8106.645263 7956.927162 7940.189177 7462.793105 8312.623517 9151.397176 8151.5696 1.053700864 0.991500649 1.16767655 0.994488873 0.976122091 0.974068746 0.91550382 1.019757412 1.122654608 1 12.99286216 -5.226771419 20.70957483 1.016654252 1.05370156 0.022536266 0.070101786 7425.377026 4434908.718 0.018323607 1.991601114 5.93E-06 5.226771419 0.037047308 LVEQANS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 LVEQANSPK 9 0 O95391 O95391 SLU7 Pre-mRNA-splicing factor SLU7 1 LVEQANS(1)PK;LVEQANS(1)PK 125.36 0.0016269 115558000 6712.5 6765.6 12253.5 7907.3 5572.3 5117.2 4664.2 8187.5 4326.9 9285.2 TRUE FALSE 6806.49571 7504.291088 9159.952376 7400.16117 6331.3416 6024.663571 5549.207601 7491.92077 4742.518078 7392.871143 0.920683666 1.015071268 1.239025028 1.000986089 0.856411735 0.814928795 0.750616032 1.013397992 0.641498815 1 12.85191905 -6.70077166 3.915693175 0.839120724 1.062611071 0.376880086 0.125696947 0.222032108 6.840856171 0.037538442 0.048072336 1.99E-07 6.70077166 0.223490348 LVEQLLS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 LVEQLLSPR 9 0 G3XAH0;Q99719-2 G3XAH0 5-Sep Septin-5 1 LVEQLLS(1)PR 83.045 0.0297 29157000 2140 2113.9 2496.8 2555.7 1958.6 2212.5 2293.7 2851.2 2601.3 3448.5 TRUE FALSE 2169.966602 2344.702751 1866.45196 2391.788841 2225.394479 2604.85581 2728.917601 2608.972763 2851.166488 2745.693807 0.790316312 0.853956382 0.679774254 0.871105451 0.810503514 0.948705862 0.993889994 0.950205284 1.038413854 1 11.42295503 -7.290470831 1.561896579 0.996997685 0.790375174 0.766967771 0.05153341 0.182962557 0.888871279 0.022219798 0.019723001 5.12E-08 7.290470831 -0.20662251 LVGATATS(ph)SPPPK ddPTM_K562_Paclitaxel_30min_R1 1 LVGATATSSPPPK 13 0 H9KVD1;Q96QD9-4;Q96QD9 H9KVD1 FYTTD1 UAP56-interacting factor 1 LVGAT(0.004)AT(0.094)S(0.858)S(0.044)PPPK 132.32 0.00031345 17975000 4926.1 4298.2 7812.9 5216.1 4262.5 3068.9 3620.5 6086.9 3570.1 6384.2 TRUE FALSE 4995.080598 4767.492012 5840.436766 4881.562692 4843.124665 3613.126326 4307.470975 5569.779852 3913.024057 5083.096536 0.982684583 0.937910972 1.148991904 0.960352151 0.95279022 0.710812061 0.847410814 1.09574544 0.769811084 1 12.31149191 -6.794794847 3.097136381 0.885220404 1.016532877 0.199254286 0.114595345 0.408168576 8.039654773 0.037285765 0.045487014 1.60E-07 6.794794847 0.131312473 LVGATATSS(ph)PPPK ddPTM_K562_Paclitaxel_30min_R1 2 LVGATATSSPPPK 13 0 H9KVD1;Q96QD9-4;Q96QD9 H9KVD1 FYTTD1 UAP56-interacting factor 1 LVGATAT(0.006)S(0.031)S(0.963)PPPK;LVGATAT(0.022)S(0.163)S(0.815)PPPK 134.56 0.00021115 53871000 7704.4 7286.2 12546.6 8384.7 7052.4 6070.3 6753.3 9228.4 5193.9 10762.1 TRUE FALSE 7812.28537 8081.731956 9379.055656 7846.942871 8013.056278 7146.782474 8034.70342 8444.389818 5692.797302 8568.778113 0.911715214 0.943160372 1.09456162 0.91575984 0.935145732 0.834049193 0.937672013 0.985483544 0.66436512 1 13.06487378 -6.669642025 2.704495631 0.889216259 0.980414578 0.132792525 0.099870105 0.545813816 8.095729824 0.031051021 0.04134199 2.14E-07 6.669642025 0.091198319 LVGS(ph)QEELASWGHEYVR ddPTM_K562_Paclitaxel_30min_R1 3 LVGSQEELASWGHEYVR 17 0 Q13200;Q13200-3;H7C2Q3 Q13200 PSMD2 26S proteasome non-ATPase regulatory subunit 2 1 LVGS(1)QEELASWGHEYVR;LVGS(1)QEELASWGHEYVR;LVGS(1)QEELASWGHEYVR 196.75 2.51E-13 59525000 3394.27 2901.35 3640.33 3912.87 3354.06 2990.59 2945.8 3574.66 3300.27 4838.35 TRUE FALSE 3441.800252 3218.129205 2721.283668 3661.916032 3810.939757 3520.929147 3504.750172 3270.970321 3617.275679 3852.291614 0.893442293 0.835380477 0.706406456 0.950581212 0.989265647 0.913983026 0.909783195 0.849097277 0.938993213 1 11.9115012 -6.295367059 24.99479634 0.929885006 0.814106762 0.482310342 0.058722349 560.6817804 413057.4328 0.01711471 0.025386733 5.07E-07 6.295367059 -0.115778244 LVHDS(ph)LEDLQMTR ddPTM_K562_Paclitaxel_30min_R1 4 LVHDSLEDLQMTR 13 0 A0A087WYY3;A0A2R8Y635;A0A2R8YDN7;Q9H7F0-2;Q9H7F0 A0A087WYY3 ATP13A3 Probable cation-transporting ATPase 13A3 1 LVHDS(1)LEDLQMTR;LVHDS(1)LEDLQMTR;LVHDS(1)LEDLQMTR;LVHDS(1)LEDLQMTR 199.33 7.81E-07 137756200 5854.6 6612 6826 6841.8 5901.5 5205.54 6752 8369 4789.64 9577.8 TRUE FALSE 5936.582463 7333.92052 5102.691877 6402.997571 6705.384213 6128.66943 8033.156752 7658.001212 5249.706323 7625.839103 0.778482523 0.961719808 0.669131857 0.839644987 0.879297887 0.803671484 1.05341283 1.004217517 0.688410318 1 12.89668038 -7.717615439 24.99994404 0.936862199 0.824801742 0.19159936 0.115150924 234.2046448 133604.6203 0.043346783 0.033576082 1.92E-08 7.717615439 -0.112060456 LVHS(ph)GSGCRSPSLGSDLTFATR ddPTM_K562_Paclitaxel_30min_R1 1 LVHSGSGCRSPSLGSDLTFATR 22 1 Q13425 Q13425 SNTB2 Beta-2-syntrophin 1 LVHS(0.331)GS(0.331)GCRS(0.331)PS(0.007)LGS(0.002)DLTFATR 80.156 0.00090045 48391000 1385 1354.4 1624.1 1387.2 1456.6 1377.7 1218.5 1778.3 1686 1850.5 TRUE FALSE 1404.394273 1502.277972 1214.075868 1298.231201 1655.01358 1622.015751 1449.704014 1627.222315 1847.947833 1473.367084 0.953186947 1.019622325 0.824014518 0.881132214 1.123286653 1.100890449 0.983939461 1.104424235 1.254234503 1 10.5249012 -6.763407286 24.99926886 1.094479017 0.919821763 0.514317861 0.083298445 45.13453211 573368.404 0.026378778 0.031428018 1.72E-07 6.763407286 -0.174657254 LVHSGSGCRS(ph)PSLGSDLTFATR ddPTM_K562_Paclitaxel_30min_R1 1 LVHSGSGCRSPSLGSDLTFATR 22 1 Q13425 Q13425 SNTB2 Beta-2-syntrophin 1 LVHS(0.291)GS(0.291)GCRS(0.404)PS(0.01)LGS(0.004)DLT(0.001)FATR 56.304 0.019548 67223000 733.63 753.14 856.91 867.55 640.77 657.74 812.35 955.57 810.19 1067.1 TRUE FALSE 743.9030834 835.3703722 640.5724724 811.909226 728.0537223 774.3809539 966.4891717 874.388364 888.0123695 849.6244343 0.87556696 0.983223102 0.753947799 0.955609553 0.856912411 0.911439128 1.137548701 1.029146913 1.04518224 1 9.730681447 -7.647936474 6.753756349 1.054714571 0.887054305 0.59793022 0.065904671 0.14509207 8.039310153 0.024180484 0.018622751 2.25E-08 7.647936474 -0.167660265 LVIIEGDLERTEER ddPTM_K562_Paclitaxel_30min_R1 2 LVIIEGDLERTEER 14 1 P06753-2;A0A087WWU8;P06753-6;P06753-3;P06753-5;P06753-4;P06753-7;A0A494C0P6;J3KN67;A0A2R2Y2Q3;P06753 P06753-2;A0A494C0P6 TPM3 Tropomyosin alpha-3 chain 0 ; 138.42 2.65E-05 10531300 2860.6 3116.8 3530.3 3670 3155 3186.6 3130.1 3818.5 2345.4 3542.6 FALSE TRUE 2900.657226 3457.102764 2639.032103 3434.622626 3584.764415 3751.698768 3724.020135 3494.094591 2570.68615 2820.616175 1.028377151 1.225655158 0.935622551 1.217685219 1.270915357 1.330099005 1.320286031 1.238769961 0.911391692 1 11.46179464 -5.24859599 22.95898732 1.177020404 1.028376862 0.05804016 0.14858469 1881.395659 3363011.589 0.03797035 0.608003361 5.64E-06 5.24859599 -0.148643542 LVLAES(ph)PQPK ddPTM_K562_Paclitaxel_30min_R1 2 LVLAESPQPK 10 0 E7EUR8;A0A1B0GVL4;P78312-4;P78312-6;P78312-2;P78312-5;P78312 E7EUR8 FAM193A Protein FAM193A 1 LVLAES(1)PQPK;LVLAES(1)PQPK 124.39 0.0019152 52502000 7532.7 6950.6 13235.5 8379.6 6420.3 5613.3 5844.2 8743.5 7603.7 10388.8 TRUE FALSE 7638.18104 7709.490013 9894.03433 7842.169962 7294.853557 6608.73994 6953.106441 8000.6851 8334.069359 8271.556857 0.923427255 0.93204824 1.196151402 0.948088745 0.881920258 0.798971712 0.840604322 0.967252627 1.007557525 1 13.01394318 -5.540177919 24.99572385 0.949555851 0.925582019 0.009189147 0.103033361 2016.178109 2913186.901 0.029255293 0.07743042 2.88E-06 5.540177919 -0.023973832 LVLEVAQHLGESTVR ddPTM_K562_Paclitaxel_30min_R1 1 LVLEVAQHLGESTVR 15 0 P06576 P06576 ATP5B "ATP synthase subunit beta, mitochondrial" 0 86.641 0.020934 0 1086.7 1081 1417.8 1046.4 1012.8 1082.1 1047.5 1109.8 1198.1 1202.7 FALSE TRUE 1101.917153 1199.027236 1059.858855 979.2885875 1150.760507 1273.995242 1246.257657 1015.515563 1313.182858 957.5890798 1.150720258 1.252131275 1.106799229 1.022660563 1.201726848 1.330419559 1.301453497 1.060492005 1.371342767 1 9.90326289 -5.677759012 17.36271563 1.181982356 1.201368263 0.004470697 0.125145403 32.80474114 6770.742062 0.032056574 0.084814886 2.10E-06 5.677759012 0.019385907 LVLMIGDIVTVIFPS(ph)SHSFILIMGNS(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 LVLMIGDIVTVIFPSSHSFILIMGNSK 27 0 Q9NYW1 Q9NYW1 TAS2R9 Taste receptor type 2 member 9 2 LVLMIGDIVT(0.016)VIFPS(0.46)S(0.46)HS(0.065)FILIMGNS(0.999)K 49.638 0.00777 8252500 836.03 906.84 1280.5 910.01 577.89 639.73 693.07 755.47 730.33 1092 TRUE FALSE 847.7369994 1005.851858 957.221938 851.6460317 656.6084018 753.1771332 824.5764144 691.288108 800.4814597 869.4498006 0.975026964 1.156883189 1.100951357 0.979522948 0.755199899 0.866268682 0.948388756 0.795086856 0.920675879 1 9.763958923 -6.513273827 5.240097524 0.872244359 1.080431017 0.556901464 0.078593458 0.118535596 10.09129436 0.022301657 0.031224941 3.07E-07 6.513273827 0.208186658 LVNSQY(ph)HFTDEYLECVSK ddPTM_K562_Paclitaxel_30min_R1 1 LVNSQYHFTDEYLECVSK 18 0 O75487-2;O75487 O75487-2 GPC4 Glypican-4;Secreted glypican-4 1 LVNS(0.063)QY(0.937)HFTDEYLECVSK 57.148 0.016515 13861000 1468.2 1410.1 1470 1438.6 1255.4 1721.9 1479.8 1480.4 770.81 1777.8 TRUE FALSE 1488.75933 1564.059487 1098.880319 1346.334635 1426.406734 2027.254788 1760.584325 1354.63078 844.8497446 1415.483384 1.051767436 1.104964922 0.77632866 0.951148314 1.007717046 1.432199637 1.243804304 0.957009312 0.59686306 1 10.4670791 -8.528574579 24.15447245 0.791266222 1.077748693 0.268295893 0.186487048 145.0220608 614964.8854 0.134246262 0.051116042 2.96E-09 8.528574579 0.286482471 LVNTLNTIPSLGQS(ph)PGPVVVSNNSSAHGSQR ddPTM_K562_Paclitaxel_30min_R1 1 LVNTLNTIPSLGQSPGPVVVSNNSSAHGSQR 31 0 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3;H7C238;M0R2X2;Q7Z3K3-4 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 1 LVNTLNTIPSLGQS(1)PGPVVVSNNSSAHGSQR 148.8 5.14E-38 19268000 1220.9 1323.8 1440.8 1528.2 1268.1 1203.4 1531.5 1572.4 1403.2 2136.3 TRUE FALSE 1237.996367 1468.336961 1077.05222 1430.188092 1440.836689 1416.806093 1822.09413 1438.814805 1537.98363 1700.920887 0.727838888 0.863259997 0.633217117 0.840831636 0.847092125 0.832964134 1.071239788 0.845903426 0.904206446 1 10.73210033 -7.055529482 1.340631309 0.93820647 0.757192146 0.485186591 0.083808743 0.388796705 1.437031815 0.035917505 0.038616213 8.80E-08 7.055529482 -0.181014324 LVPLLDTGDIIIDGGNSEYRDTTRR ddPTM_K562_Paclitaxel_30min_R1 2 LVPLLDTGDIIIDGGNSEYRDTTRR 25 2 P52209-2;P52209;K7EMN2;K7EM49 P52209-2 PGD "6-phosphogluconate dehydrogenase, decarboxylating" 0 ; 87.228 8.84E-05 51914000 4756.5 5168.3 5123.9 5094.1 4198.5 4159.4 5134.6 6085.4 6833.6 6293.2 FALSE TRUE 4823.105675 5732.592472 3830.308073 4767.387226 4770.406781 4897.011189 6108.863546 5568.407286 7489.997813 5010.642386 0.962572322 1.144083339 0.764434533 0.951452301 0.952054929 0.97732203 1.219177717 1.111316046 1.494817877 1 12.29077986 -7.742849435 5.237704557 1.217270737 0.955884668 0.414271118 0.144153809 0.171868263 13.06410287 0.056341119 0.041135892 1.81E-08 7.742849435 -0.261386069 LVPRPGSGSSSGSSNSGSQPGS(ph)HPGSQSGSGER ddPTM_K562_Paclitaxel_30min_R1 1 LVPRPGSGSSSGSSNSGSQPGSHPGSQSGSGER 33 1 C9J840;A0A0D9SG62;G5E948;A0A0D9SEY1;O95819-2;O95819-6;O95819-3;E7EX83;H7C0P6;E7ENQ1;G3XAA2;H7C360;E7EN19;O95819-4;O95819;O95819-5 C9J840 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 LVPRPGS(0.004)GS(0.004)S(0.004)S(0.004)GS(0.012)S(0.014)NS(0.014)GS(0.014)QPGS(0.509)HPGS(0.153)QS(0.153)GS(0.117)GER 59.302 0.00047757 9174100 1494.4 1407.8 1782.4 1535.3 1148.1 1337.8 1304.4 1463.8 1031.3 1761.9 TRUE FALSE 1515.326211 1561.508365 1332.411076 1436.83273 1304.490657 1575.040046 1551.903091 1339.441053 1130.360973 1402.823813 1.080197097 1.113117949 0.949806429 1.024243185 0.929903417 1.122763979 1.106270849 0.954817733 0.805775439 1 10.45411811 -8.51595395 24.09797586 0.89535731 1.042136877 0.379010479 0.07584012 205.5173199 715213.6481 0.047965107 0.019674878 3.05E-09 8.51595395 0.146779566 LVPRPGSGSSSGSSNSGSQPGSHPGS(ph)QSGSGER ddPTM_K562_Paclitaxel_30min_R1 4 LVPRPGSGSSSGSSNSGSQPGSHPGSQSGSGER 33 1 C9J840;A0A0D9SG62;G5E948;A0A0D9SEY1;O95819-2;O95819-6;O95819-3;E7EX83;H7C0P6;E7ENQ1;G3XAA2;H7C360;E7EN19;O95819-4;O95819;O95819-5 C9J840 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 LVPRPGSGSSSGSSNSGSQPGS(0.007)HPGS(0.331)QS(0.331)GS(0.331)GER;LVPRPGSGSSSGSSNSGSQPGS(0.004)HPGS(0.406)QS(0.295)GS(0.295)GER;LVPRPGSGSSSGSSNSGS(0.004)QPGS(0.122)HPGS(0.291)QS(0.291)GS(0.291)GER;LVPRPGSGSSSGSSNSGS(0.001)QPGS(0.402)HPGS(0.498)QS(0.025)GS(0.074)GER 96.38 8.37E-11 30142400 2064.79 2214.87 3126.71 2461.37 2319.47 2369.76 1978.28 2235.5 1858.56 2836.01 TRUE FALSE 2093.70343 2456.696997 2337.33339 2303.508745 2635.421083 2790.003663 2353.648303 2045.580321 2037.082992 2258.029605 0.927225855 1.087982634 1.03512079 1.020141073 1.167133096 1.235592154 1.042346078 0.905913863 0.902150701 1 11.14084869 -8.152894382 4.868630262 0.928986964 1.082721807 0.37306578 0.08223247 0.239857863 8.735110692 0.042906245 0.024125536 7.03E-09 8.152894382 0.153734843 LVPSEREASPS(ph)NSCQDSTDTESNNEEQR ddPTM_K562_Paclitaxel_30min_R1 1 LVPSEREASPSNSCQDSTDTESNNEEQR 28 1 Q13422-5;Q13422-4;Q13422-3;Q13422-7;Q13422;A0A0A0MRA0;R9R4D9;A0A0A0MST1;A0A087WU46;Q13422-6;Q13422-2 Q13422-5 IKZF1 DNA-binding protein Ikaros 1 LVPS(0.008)EREAS(0.171)PS(0.766)NS(0.053)CQDS(0.002)T(0.001)DTESNNEEQR 77.939 5.09E-05 11815000 428.63 302.76 384.33 373.13 248.63 316.82 139.23 214.17 750.61 290.06 TRUE FALSE 434.6321424 335.8163607 287.3011382 349.1991119 282.4976153 373.0035786 165.6481657 195.9749217 822.7094443 230.9456128 1.881967521 1.454092834 1.244020766 1.512040466 1.223221398 1.615114373 0.7172605 0.848576075 3.562351475 1 7.85140933 -8.718522601 24.99998284 2.281209965 1.308487726 0.257149199 0.658852222 151.3588867 88170.03274 0.413563828 0.15630992 1.91E-09 8.718522601 -0.972722239 LVPTGPTHREPS(ph)PVRYDNLSR ddPTM_K562_Paclitaxel_30min_R1 1 LVPTGPTHREPSPVRYDNLSR 21 2 Q9C0B5-2;Q9C0B5 Q9C0B5-2 ZDHHC5 Palmitoyltransferase ZDHHC5 1 LVPT(0.001)GPT(0.001)HREPS(0.906)PVRY(0.092)DNLS(0.001)R 59.252 0.012932 577660000 756.51 1078.4 1072.9 1119.5 669.7 968.84 878.68 1338 1002.3 1116.3 TRUE FALSE 767.103474 1196.143359 802.0331255 1047.700281 760.9244781 1140.650171 1045.404943 1224.328548 1098.575393 888.7974472 0.863080195 1.345799724 0.902380096 1.178784079 0.856128109 1.283363464 1.176201559 1.377511324 1.23602447 1 9.795710863 -7.29682413 24.99753721 1.235813483 1.048082167 0.226600606 0.167188774 872.149749 616126.8638 0.054978058 0.048487789 5.05E-08 7.29682413 -0.187731316 LVQS(ph)PNSYFMDVK ddPTM_K562_Paclitaxel_30min_R1 2 LVQSPNSYFMDVK 13 0 H0YMV8;Q71UM5;P42677;C9JLI6 H0YMV8 RPS27L;RPS27 40S ribosomal protein S27;40S ribosomal protein S27-like 1 LVQS(0.99)PNS(0.01)YFMDVK;LVQS(0.988)PNS(0.011)Y(0.001)FMDVK 153.72 0.00063254 43511000 5309.1 4541.1 8594.3 6000.4 4499 4413.5 3826.2 6205.1 4898.6 7214.6 TRUE FALSE 5383.44378 5036.912655 6424.562672 5615.561201 5111.839969 5196.172256 4552.201476 5677.938024 5369.132418 5744.26056 0.937186558 0.876860059 1.118431625 0.977595139 0.889903916 0.904585055 0.792478236 0.988454121 0.934695138 1 12.48790548 -6.748147798 23.16508785 0.910793347 0.980393771 0.11680564 0.077898698 194.1114831 338300.5102 0.023678053 0.030343271 1.79E-07 6.748147798 0.069600423 LVRLS(ph)SDSFAR ddPTM_K562_Paclitaxel_30min_R1 1 LVRLSSDSFAR 11 1 A0A087WSV0;Q9HB09-3;Q9HB09 A0A087WSV0 BCL2L12 Bcl-2-like protein 12 1 LVRLS(0.603)S(0.199)DS(0.199)FAR 98.942 0.030347 44654000 1563.5 1478.9 1646.8 2128 1705.1 1338.3 1859.4 2060 1443.5 2453.2 TRUE FALSE 1585.393824 1640.371303 1231.044973 1991.519605 1937.363488 1575.628714 2212.211443 1884.990142 1582.154625 1953.236493 0.811675304 0.839822166 0.630259048 1.019599834 0.991873485 0.806675853 1.132587606 0.965059863 0.810016928 1 10.93165092 -6.276786359 24.9956086 0.961401567 0.768509162 0.437447252 0.103943634 750.7175142 1222690.911 0.029183045 0.043467702 5.29E-07 6.276786359 -0.192892405 LVS(ph)FHDDSDEDLLHI ddPTM_K562_Paclitaxel_30min_R1 1 LVSFHDDSDEDLLHI 15 0 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 1 LVS(0.994)FHDDS(0.006)DEDLLHI 76.158 0.025311 4988000 3109.9 2803.2 3207.1 3177.2 2803.1 2485.7 2514.5 3299.6 2952.8 3465.5 TRUE FALSE 3153.448195 3109.262856 2397.42794 2973.428613 3184.929677 2926.503994 2991.613248 3019.278385 3236.429633 2759.229198 1.142872871 1.126859218 0.868875968 1.077630164 1.154282391 1.060623741 1.084220641 1.094247041 1.172947009 1 11.43004959 -6.513089345 24.95351828 1.098634844 1.040765804 0.061890924 0.082099751 1212.020401 3089485.622 0.024164847 0.03313937 3.07E-07 6.513089345 -0.05786904 LVS(ph)PGSANETSSILVESVTR ddPTM_K562_Paclitaxel_30min_R1 1 LVSPGSANETSSILVESVTR 20 0 A0A0A0MT44;E7EN95;O75369-7;O75369-6;O75369-3;O75369-2;O75369-9;O75369;O75369-8 A0A0A0MT44 FLNB Filamin-B 1 LVS(0.741)PGS(0.233)ANET(0.016)S(0.004)S(0.004)ILVESVT(0.001)R 77.391 0.0057471 3582800 484.1 344.97 374.53 448.6 301.48 311.07 461.54 312.09 347.66 304.06 TRUE FALSE 490.8788936 382.6349912 279.9752694 419.8288039 342.5466801 366.2338969 549.1148056 285.5760065 381.0542964 242.0924051 2.027650943 1.580532818 1.156481011 1.734167595 1.414941869 1.512785569 2.268203356 1.179615719 1.574003514 1 7.91941401 -9.278149125 1.292241224 1.006027127 1.617453636 0.244909587 0.324355139 1.456130152 4.27211128 0.307192698 0.092601421 5.27E-10 9.278149125 0.61142651 LVS(ph)RT(ph)AS(ph)KYT(ph)DRALR ddPTM_K562_Paclitaxel_30min_R1 1 LVSRTASKYTDRALR 15 3 Q96DF8 Q96DF8 DGCR14 Protein DGCR14 4 LVS(0.998)RT(0.998)AS(0.885)KY(0.304)T(0.815)DRALR 45.764 0.030913 0 0 0 72.826 142.87 50.536 127.97 135.07 152.86 59.26 215.52 TRUE FALSE 0 0 54.4401756 133.7069577 57.41985878 150.6636827 160.6988274 139.8735889 64.95218778 171.5969057 0 0 0.317256161 0.779192125 0.334620596 0.878009321 0.93649024 0.815128853 0.378516078 1 7.422879728 -6.052273105 2.016349825 0.731929845 1.20E-37 0.66883439 0.208831548 0.207166796 1.642030187 0.062312138 0.155084368 8.87E-07 6.052273105 -0.731929845 LVSFHDDS(ph)DEDLLHI ddPTM_K562_Paclitaxel_30min_R1 16 LVSFHDDSDEDLLHI 15 0 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 1 LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI;LVSFHDDS(1)DEDLLHI 228.7 3.97E-35 1177468700 51099.39 52139.5 62276.11 59787.23 53990.93 51115.48 49947.03 58325.13 56275.07 61699.81 TRUE FALSE 51814.93912 57832.26693 46553.73581 55952.74467 61345.40874 60180.09268 59424.2182 53370.04615 61680.54192 49125.35485 1.054749411 1.17723866 0.947651899 1.138978941 1.248752481 1.225031206 1.209644559 1.086405306 1.255574481 1 15.58418021 -5.249095494 23.20436018 1.147634278 1.054749273 0.065445459 0.099096263 2175.011494 4088439.039 0.025056961 0.389868093 5.64E-06 5.249095494 -0.092885004 LVSFHDDSDEDLLHI ddPTM_K562_Paclitaxel_30min_R1 1 LVSFHDDSDEDLLHI 15 0 P11717 P11717 IGF2R Cation-independent mannose-6-phosphate receptor 0 136.01 2.27E-05 7318700 2835.3 2795 3315.6 2885.8 2433.2 2343 2581.3 3059.7 2755.1 3210.4 FALSE TRUE 2875.002948 3100.167552 2478.535773 2700.717704 2764.643034 2758.498153 3071.0882 2799.759387 3019.739665 2556.118718 1.124753294 1.212841771 0.969648145 1.056569746 1.081578494 1.079174505 1.201465401 1.095316648 1.181376923 1 11.31973913 LVSPETEAS(ph)EESLQFNLEKPATGER ddPTM_K562_Paclitaxel_30min_R1 1 LVSPETEASEESLQFNLEKPATGER 25 1 A6NNK5;Q12888;Q12888-3;Q12888-2;C9JXV0 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 LVS(0.003)PET(0.045)EAS(0.938)EES(0.013)LQFNLEKPATGER 56.766 0.015146 0 171.63 240.11 403.64 348.22 412.24 169.38 246.08 251.69 308.91 263.12 TRUE FALSE 174.0333495 266.3260218 301.7360898 325.8867278 468.3940673 199.4171648 292.7723954 230.3073635 338.5821857 209.4959996 0.830723975 1.271270203 1.440295235 1.555574944 2.235813897 0.951890085 1.397508286 1.09934015 1.616174946 1 7.710778885 -11.33875948 4.804172003 0.999742575 1.386690234 0.083570649 0.374062602 0.001047571 0.000144186 0.3678736 0.089163831 4.58E-12 11.33875948 0.386947659 LVTLT(ph)TTVTELEEDLGT(ph)AR ddPTM_K562_Paclitaxel_30min_R1 1 LVTLTTTVTELEEDLGTAR 19 0 B1APN9;O75335 B1APN9 PPFIA4 Liprin-alpha-4 2 LVT(0.193)LT(0.742)T(0.045)T(0.02)VTELEEDLGT(1)AR 69.876 0.023928 28041000 431.53 372.57 614.24 516.95 304.18 301.09 381.44 528.02 675.65 531.44 TRUE FALSE 437.5727514 413.2484526 459.1675152 483.7951408 345.6144658 354.484084 453.8162487 483.1614052 740.5492014 423.1322363 1.034127665 0.976641383 1.085163161 1.143366303 0.81680013 0.837761942 1.072516367 1.141868579 1.750160205 1 8.724964791 -8.533087268 24.96787709 1.398725042 0.999044575 0.375514246 0.194187914 201.5898424 493033.9066 0.124712269 0.047246872 2.93E-09 8.533087268 -0.399680468 LVTSGAESGNLNT(ph)SPSSNQTR ddPTM_K562_Paclitaxel_30min_R1 1 LVTSGAESGNLNTSPSSNQTR 21 0 Q8NHV4-2;Q8NHV4;Q8NHV4-3 Q8NHV4-2 NEDD1 Protein NEDD1 1 LVTSGAESGNLNT(0.671)S(0.328)PS(0.001)SNQTR 144.4 2.64E-16 49288000 1467.6 1539.6 1986.5 1912.1 1514.8 1157.7 1457.7 1473.8 1408.9 1639.5 TRUE FALSE 1488.150928 1707.698735 1484.983506 1789.466464 1721.141406 1363.00184 1734.290965 1348.591491 1544.23114 1305.369 1.140023187 1.308211498 1.13759673 1.37085105 1.318509483 1.044150612 1.328582926 1.03311132 1.182984382 1 10.35024197 -8.271909247 24.97940034 1.081035883 1.235503687 0.329200818 0.106646344 884.9070047 2111231.339 0.055401025 0.02708612 5.35E-09 8.271909247 0.154467804 LVTSGAESGNLNTS(ph)PSSNQTR ddPTM_K562_Paclitaxel_30min_R1 1 LVTSGAESGNLNTSPSSNQTR 21 0 Q8NHV4-2;Q8NHV4;Q8NHV4-3 Q8NHV4-2 NEDD1 Protein NEDD1 1 LVTSGAESGNLNT(0.362)S(0.544)PS(0.082)S(0.013)NQTR 159.5 9.75E-18 48394000 1508.5 1408 1924.6 1627.2 1614.9 1451.7 1597.7 1530.8 1563.8 1822.2 TRUE FALSE 1529.623654 1561.730202 1438.710927 1522.838675 1834.87672 1709.138612 1900.855234 1400.748985 1714.009977 1450.83464 1.054305992 1.0764357 0.991643629 1.049629388 1.26470424 1.178038189 1.310180487 0.96547804 1.181395819 1 10.50266738 -6.593814681 15.06906895 1.15764175 1.040406219 0.211350544 0.100676543 2.423973982 512.4067566 0.029452827 0.038023214 2.55E-07 6.593814681 -0.117235531 LVVS(ph)T(ph)VNHYS(ph)S(ph)VVIDRR ddPTM_K562_Paclitaxel_30min_R1 1 LVVSTVNHYSSVVIDRR 17 1 Q06190 Q06190 PPP2R3A Serine/threonine-protein phosphatase 2A regulatory subunit B subunit alpha 4 LVVS(0.998)T(0.99)VNHY(0.479)S(0.576)S(0.956)VVIDRR 58.688 0.021961 12370000 1245.4 1343.7 1698.9 1500.2 1296.6 1285.8 1562 1628 922.81 1594.7 TRUE FALSE 1262.839442 1490.40971 1269.991683 1403.983887 1473.218872 1513.818576 1858.381346 1489.691238 1011.450024 1269.699265 0.994597286 1.173828915 1.000230305 1.105760967 1.160289616 1.192265459 1.463638987 1.173263055 0.796605977 1 10.31027111 -5.250249039 22.67669015 1.134159317 0.994596987 0.041640385 0.163218621 1495.532191 3030402.834 0.042018949 0.562837501 5.62E-06 5.250249039 -0.139562329 LWPSGDR ddPTM_K562_Paclitaxel_30min_R1 1 LWPSGDR 7 0 E9PBS1;P22234;P22234-2;D6RF62 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 0 119.56 0.015748 46524000 617.09 653.79 637.94 522.74 565.42 509.14 537.04 724.75 481.68 435.29 FALSE TRUE 625.7311639 725.1730032 476.8841571 489.2137961 642.4397766 599.4288303 638.9405365 663.1779638 527.9475162 346.5776591 1.805457298 2.092382426 1.375980663 1.411556063 1.853667598 1.729565697 1.843571043 1.913504654 1.523316643 1 8.437034849 -9.063208616 5.8685142 1.000047035 1.745234997 0.553376207 0.20542298 0.368342838 32.46514101 0.210721427 0.054711515 8.65E-10 9.063208616 0.745187963 LY(ph)GGVCY(ph)AGIDT(ph)DPELKY(ph)PKGAGR ddPTM_K562_Paclitaxel_30min_R1 1 LYGGVCYAGIDTDPELKYPKGAGR 24 2 Q17RY0-2;B7ZLQ8;E5RJM0;Q17RY0;A0A5K1VW93;E5RFP2;A0A5K1VW71;A0A5K1VW79;A0A5K1VW61;A0A590UJI5;Q7Z5Q1-8;H0Y9D9;Q8NE35-2;Q8NE35;Q7Z5Q1;Q7Z5Q1-3;Q7Z5Q1-6;Q7Z5Q1-4;Q7Z5Q1-5;Q7Z5Q1-7;Q17RY0-3;Q7Z5Q1-9 Q17RY0-2 CPEB4;CPEB2;CPEB3 Cytoplasmic polyadenylation element-binding protein 4;Cytoplasmic polyadenylation element-binding protein 2;Cytoplasmic polyadenylation element-binding protein 3 4 LY(1)GGVCY(1)AGIDT(1)DPELKY(1)PKGAGR 44.415 0.028432 0 74.191 82.132 0 0 0 0 0 0 86.91 147.37 TRUE FALSE 75.2299029 91.09944951 0 0 0 0 0 0 95.25809382 117.3359131 0.641149848 0.776398692 0 0 0 0 0 0 0.811840904 1 6.874500838 -8.86411119 4.938169849 0.983248545 0.168642273 0.527504873 0.277523784 0.175592725 6.460327909 0.29847815 0.078305124 1.37E-09 8.86411119 -0.814606273 LY(ph)LKT(ph)TVMY ddPTM_K562_Paclitaxel_30min_R1 1 LYLKTTVMY 9 1 Q9UI36-4;Q9UI36-3;Q9UI36-2;Q9UI36 Q9UI36-4 DACH1 Dachshund homolog 1 2 LY(1)LKT(0.5)T(0.5)VMY 67.897 0.019656 0 941.11 991.03 938.46 1031.5 613.41 1214.2 702.36 1108.8 564.96 1154.4 TRUE FALSE 954.2884436 1099.234007 701.5341663 965.3442068 696.9668271 1429.521322 835.6291434 1014.600519 619.2269323 919.1326463 1.038248883 1.195947083 0.763256717 1.050277357 0.758287533 1.555293817 0.909149671 1.103867351 0.673707908 1 9.844129272 -8.742192937 24.87406777 0.83685376 1.045173265 0.11938725 0.228033084 418.302327 540617.464 0.148970696 0.056113313 1.81E-09 8.742192937 0.208319505 LYDLNHNEIGELIR ddPTM_K562_Paclitaxel_30min_R1 2 LYDLNHNEIGELIR 14 0 A0A494C1A5;O75643 A0A494C1A5 SNRNP200 U5 small nuclear ribonucleoprotein 200 kDa helicase 0 ; 135.81 5.74E-05 15073500 6827.5 6311.4 8353.6 6943.5 6316.8 6056.3 5752.5 7295 6147 7160.8 FALSE TRUE 6923.106065 7000.499996 6244.630364 6498.174988 7177.255104 7130.29977 6844.006845 6675.244216 6737.446816 5701.425029 1.214276436 1.227850925 1.095275362 1.139745757 1.258852842 1.250617124 1.200402848 1.17080277 1.181712779 1 12.47710684 -9.731374933 1.23301108 0.999739224 1.195680532 0.605431971 0.047008707 3.870025146 5.810835219 0.051541834 0.014998558 1.86E-10 9.731374933 0.195941308 LYEALT(ph)PVH ddPTM_K562_Paclitaxel_30min_R1 1 LYEALTPVH 9 0 G5E9W3;Q9UKF6 G5E9W3 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 1 LYEALT(1)PVH 99.013 0.027781 44198000 4536.7 4866.5 5613.5 5114.1 4174.7 4226.9 4686.1 5131.7 4743.5 6382.6 TRUE FALSE 4600.227797 5397.840927 4196.302498 4786.104516 4743.364818 4976.481366 5575.263012 4695.730054 5199.13437 5081.822617 0.905231871 1.062186018 0.825747535 0.941808654 0.933398345 0.979270971 1.097099099 0.924024786 1.023084582 1 12.3111303 -7.414654325 4.529903173 1.008603511 0.935730609 0.228872812 0.066704757 0.371956779 12.38765437 0.023842839 0.020676529 3.85E-08 7.414654325 -0.072872902 LYENFISEFEHR ddPTM_K562_Paclitaxel_30min_R1 2 LYENFISEFEHR 12 0 E9PPD2;E9PQG3;J3KNQ3;A0A087WUL9;Q9UNM6 E9PPD2 PSMD13 26S proteasome non-ATPase regulatory subunit 13 0 ; 161.25 0.0018768 13117600 8813.2 8700.7 10442.5 9556.5 7891.5 8250 9546.7 11860.3 7347.2 13104.9 FALSE TRUE 8936.611991 9650.67185 7806.161724 8943.588863 8966.455904 9713.021664 11358.13649 10852.69349 8052.931388 10434.11419 0.856480179 0.9249153 0.748138422 0.857148839 0.859340404 0.930890873 1.08855781 1.040116419 0.771788697 1 13.34902051 -7.365011719 3.583357967 0.981382181 0.847659122 0.316383891 0.087128142 0.296212421 7.03354516 0.03271966 0.028579683 4.32E-08 7.365011719 -0.13372306 LYFLQCETCHSR ddPTM_K562_Paclitaxel_30min_R1 1 LYFLQCETCHSR 12 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 0 123.26 0.0039247 6780700 4241 3386.7 4342.2 3933.3 2607.1 2964.1 3625.7 4400 4350.7 5403.9 FALSE TRUE 4300.387085 3756.471359 3245.957906 3681.035743 2962.231159 3489.741517 4313.657648 4026.192536 4768.604174 4302.582214 0.999489811 0.873073697 0.754420891 0.855541059 0.688477526 0.811080729 1.002574136 0.935761907 1.108312157 1 12.07098704 -7.764654986 23.98533261 1.006308952 0.823534723 0.518015902 0.085467113 43.14340169 321798.4904 0.03592455 0.025388884 1.72E-08 7.764654986 -0.182774229 LYGS(ph)PTQIGPSYR ddPTM_K562_Paclitaxel_30min_R1 1 LYGSPTQIGPSYR 13 0 E7EWD6;Q76L83-2;Q76L83 E7EWD6 ASXL2 Putative Polycomb group protein ASXL2 1 LY(0.001)GS(0.619)PT(0.3)QIGPS(0.08)YR 130.47 0.00039821 12007000 542.67 609.11 994.08 748.17 675.87 542.42 709.69 551.8 623.96 772.13 TRUE FALSE 550.2690543 675.6146897 743.1122094 700.1857249 767.9349366 638.610571 844.3499727 504.9211458 683.8941459 614.7694822 0.895081929 1.098972394 1.208765612 1.138940278 1.249142905 1.038780534 1.373441586 0.821317844 1.112439973 1 9.26390174 -8.278194841 24.98115433 0.975159218 1.143999149 0.235761811 0.136421319 1205.061668 1796647.861 0.07135093 0.034415356 5.27E-09 8.278194841 0.168839931 LYLPT(ph)S(ph)Y(ph)LVK ddPTM_K562_Paclitaxel_30min_R1 1 LYLPTSYLVK 10 0 E9PKB8;A6NE52-2;A6NE52 E9PKB8 KIAA1875 WD repeat-containing protein KIAA1875 3 LYLPT(1)S(1)Y(1)LVK 68.515 0.019981 12393000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 LYNNHEIR ddPTM_K562_Paclitaxel_30min_R1 2 LYNNHEIR 8 0 B7Z645;O60506-5;O60506-4;O60506-3;O60506-2;O60506 B7Z645 SYNCRIP Heterogeneous nuclear ribonucleoprotein Q 0 ; 134.48 0.00021169 17959000 4869.7 4752.2 6390.8 5230.2 4571.4 4520.7 4357.4 5750.1 4548.4 5747.3 FALSE TRUE 4937.890824 5271.061267 4777.3635 4894.758382 5194.102074 5322.382671 5184.193903 5261.593114 4985.294143 4575.997105 1.079085216 1.151893488 1.044004922 1.069659414 1.135075472 1.163108837 1.132910223 1.149824397 1.089444339 1 12.15987042 -6.767410506 24.99807711 1.122846664 1.087844823 0.031302278 0.050237723 349.9828859 1465196.546 0.014959663 0.017393525 1.71E-07 6.767410506 -0.035001842 LYPPGDEEEAELADSSGLYHEGS(ph)PSPGSPWK ddPTM_K562_Paclitaxel_30min_R1 1 LYPPGDEEEAELADSSGLYHEGSPSPGSPWK 31 0 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 LYPPGDEEEAELADSSGLY(0.122)HEGS(0.771)PS(0.019)PGS(0.088)PWK 115.58 3.82E-18 0 823.72 638.86 968.86 794.05 581.94 670.64 518.03 971.56 407.59 1295.6 TRUE FALSE 835.2546214 708.6128953 724.2593103 743.123187 661.2100803 789.5685877 616.3234882 889.0199137 446.7408407 1031.556009 0.809703607 0.686935939 0.702103719 0.720390537 0.640983209 0.765415141 0.597469728 0.861824182 0.433074731 1 10.01060644 -11.88456311 2.686163674 1.149366436 0.694965436 0.40194345 0.113021216 16836081.2 10166738.65 15951284.69 0.026640845 1.30E-12 11.88456311 -0.454401 LYS(ph)LPNPS(ph)VLVS(ph)LR ddPTM_K562_Paclitaxel_30min_R1 1 LYSLPNPSVLVSLR 14 0 Q96N67-4;Q96N67-3;Q96N67-5;Q96N67-2;Q96N67-6;Q96N67;A0A1B0GWE0 Q96N67-4 DOCK7 Dedicator of cytokinesis protein 7 3 LY(0.021)S(0.979)LPNPS(1)VLVS(1)LR 113.43 0.0026857 19822000 0 168.51 0 0 0 0 0 0 0 0 TRUE FALSE 0 186.9084917 0 0 0 0 0 0 0 0 0 LYSGS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 1 LYSGSPTR 8 0 Q6PJI9-3;Q6PJI9;H3BMH3;Q6PJI9-4 Q6PJI9-3 WDR59 WD repeat-containing protein 59 1 LYS(0.022)GS(0.978)PTR 123.21 0.0031554 35126000 2123.3 2268.9 2446.7 2487.4 2599.7 2326.9 2180.6 2545.3 1771 2794.1 TRUE FALSE 2153.032751 2516.626175 1829.000325 2327.869297 2953.823153 2739.543044 2594.357467 2329.060878 1941.112463 2224.660886 0.967802672 1.131240357 0.822147922 1.046392873 1.327763333 1.231442986 1.166181094 1.046928497 0.872543081 1 11.11936972 -5.242598096 22.36375946 1.080461776 0.967802283 0.040610045 0.145806432 3614.89382 4290422.443 0.039341092 1.102751641 5.72E-06 5.242598096 -0.112659493 LYTDFDEIRQEIENETER ddPTM_K562_Paclitaxel_30min_R1 1 LYTDFDEIRQEIENETER 18 1 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;B4DPZ9;F8VUJ9;B4DDQ3;F8VZ52 O00429-4 DNM1L Dynamin-1-like protein 0 105.17 0.007535 6903800 516.54 647.25 742.9 652.8 525.4 636.29 608.98 715.86 546.1 932.01 FALSE TRUE 523.7731537 717.9189439 555.3457069 610.9323298 596.9683751 749.1270975 724.5307759 655.0432247 598.555345 742.0658504 0.705831098 0.967459887 0.748377933 0.823285871 0.804468195 1.009515661 0.976369921 0.882729241 0.806606779 1 9.535403406 -7.237487924 24.70354254 0.930297752 0.815966244 0.354872708 0.084055212 856.9401468 883848.9542 0.0275585 0.027543972 5.79E-08 7.237487924 -0.114331507 LYTY(ph)IQSR ddPTM_K562_Paclitaxel_30min_R1 3 LYTYIQSR 8 0 O43781-2;O43781 O43781-2 DYRK3 Dual specificity tyrosine-phosphorylation-regulated kinase 3 1 LYT(0.033)Y(0.967)IQSR;LYT(0.013)Y(0.987)IQSR;LYT(0.022)Y(0.978)IQSR 121.09 0.0028903 17118000 2092.33 1876.13 2042.85 2008.24 1607.74 1798.28 1598.02 2175.17 1987.9 2112.62 TRUE FALSE 2121.629075 2080.972218 1527.107252 1879.440475 1826.741407 2117.179709 1901.235953 1990.375732 2178.846677 1682.066884 1.261322659 1.237151886 0.907875463 1.117339918 1.08600997 1.258677481 1.130297475 1.183291669 1.295338906 1 10.71601936 -7.231063641 24.76303527 1.182275403 1.116192612 0.043391678 0.115995655 1891.874978 1542302.298 0.03886448 0.038860614 5.87E-08 7.231063641 -0.066082791 MAAGRRTCSIST(ph)TRPCASASR ddPTM_K562_Paclitaxel_30min_R1 1 MAAGRRTCSISTTRPCASASR 21 3 P04070-2 P04070-2 1 MAAGRRT(0.002)CS(0.002)IS(0.103)T(0.881)T(0.012)RPCASASR 48.848 0.02778 15818000 0 0 249.28 109.23 0 0 110.85 147.08 119.3 140.14 TRUE FALSE 0 0 186.3461809 102.2244767 0 0 131.8832088 134.584636 130.759298 111.5793911 0 0 1.670077056 0.91615912 0 0 1.181967454 1.206178262 1.171894709 1 6.801926773 -7.788404107 24.88528456 1.157192196 0.470224758 0.319187469 0.505063127 302.0086376 278715.528 0.233129112 0.157222969 1.63E-08 7.788404107 -0.686967438 MAAPSMK ddPTM_K562_Paclitaxel_30min_R1 1 MAAPSMK 7 0 Q5JTJ3-3 Q5JTJ3-3 0 48.174 0.031201 11700000 4079 4261.8 5359.4 4975.6 4481.1 3755.1 3899.4 4811 4772.4 5092.7 FALSE TRUE 4136.118585 4727.117736 4006.353186 4656.487286 5091.501686 4421.014261 4639.290794 4402.275521 5230.810344 4054.804945 1.02005365 1.165806445 0.988050779 1.148387493 1.255671174 1.090314903 1.144146477 1.085693537 1.290027613 1 11.9854168 -6.45974701 23.53446417 1.150989778 1.068664497 0.161330972 0.089094131 217.0568925 80914.04235 0.023758043 0.035238803 3.47E-07 6.45974701 -0.082325282 MAASCPLPVTPDLPT(ph)LR ddPTM_K562_Paclitaxel_30min_R1 1 MAASCPLPVTPDLPTLR 17 0 F8VZA8;Q8N6Q8 F8VZA8 METTL25 Methyltransferase-like protein 25 1 MAASCPLPVT(0.006)PDLPT(0.994)LR 84.753 0.023876 18647000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 MAEAPASPAPLS(ph)PLEVELDPEFEPQSRPR ddPTM_K562_Paclitaxel_30min_R1 1 MAEAPASPAPLSPLEVELDPEFEPQSRPR 29 1 O43524;A0A2Z4LIS9 O43524 FOXO3 Forkhead box protein O3 1 MAEAPAS(0.001)PAPLS(0.998)PLEVELDPEFEPQSRPR 76.744 5.38E-05 6038900 452.69 458.89 259.32 181.2 241.69 178.65 367.52 367.44 364.33 288.49 TRUE FALSE 459.0290567 508.9931621 193.8514588 169.578643 274.6122698 210.3310691 437.2550014 336.2236785 399.3255244 229.6955796 1.998423554 2.215946702 0.843949453 0.738275605 1.195548779 0.915694893 1.903628281 1.46377949 1.738498951 1 7.843579283 -7.76837353 24.97753271 1.565124818 1.305328977 0.037759136 0.49821404 599.2984869 2158710.697 0.224354387 0.15495173 1.70E-08 7.76837353 -0.259795841 MAEESSSSSSSSS(ph)PTAATSQQQQLK ddPTM_K562_Paclitaxel_30min_R1 1 MAEESSSSSSSSSPTAATSQQQQLK 25 0 A0A669KAU9;A0A669KAX4;Q13620-1;K4DI93;Q13620 A0A669KAU9 CUL4B Cullin-4B 1 MAEESSSSS(0.001)S(0.004)S(0.018)S(0.094)S(0.833)PT(0.05)AATSQQQQLK 143.47 7.18E-20 10637000 600.8 444.23 834.6 629.01 519.96 314.14 412.31 584.95 379.15 851.43 TRUE FALSE 609.2130536 492.7325337 623.8949078 588.6681139 590.787355 369.8483183 490.5436701 535.2548464 415.5690516 677.9080986 0.898666139 0.726842672 0.920323727 0.86835976 0.871485908 0.545572946 0.723613822 0.78956845 0.613016797 1 9.404945896 MAGNEALS(ph)PTSPFR ddPTM_K562_Paclitaxel_30min_R1 1 MAGNEALSPTSPFR 14 0 Q86WR7;Q86WR7-2;D3DRR9 Q86WR7 PROSER2;C10orf47 Proline and serine-rich protein 2 1 MAGNEALS(0.998)PT(0.001)S(0.001)PFR 90.853 0.014195 37942000 935.63 1036.9 1304.1 1298.8 871.92 987.33 706.67 911.05 869.82 1452.6 TRUE FALSE 948.7317067 1150.112249 974.8638261 1215.500781 990.6902657 1162.419113 840.7569434 833.6506159 953.3700975 1156.559323 0.820305269 0.994425643 0.842899977 1.050962763 0.856584047 1.005066571 0.726946666 0.720802297 0.824315778 1 10.17562355 -7.763361365 24.99969646 0.794749712 0.929800238 0.208825228 0.101237633 63.40364846 824680.7701 0.038171762 0.027208578 1.72E-08 7.763361365 0.135050526 MALPPQEDAT(ph)ASPPR ddPTM_K562_Paclitaxel_30min_R1 1 MALPPQEDATASPPR 15 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 MALPPQEDAT(0.648)AS(0.352)PPR 90.476 0.026958 12096000 1434 1340.6 1651.6 1368.6 1053.2 1070 1253.3 1542.3 1107.8 1860.1 TRUE FALSE 1454.080424 1486.971242 1234.633153 1280.824122 1196.663671 1259.749476 1491.107132 1411.271988 1214.20914 1481.010599 0.981816352 1.004024713 0.833642348 0.864831165 0.808004799 0.850601257 1.006817327 0.952911471 0.819851756 1 10.53236625 -10.40470592 14.81814979 0.999999314 0.902598136 0.135390832 0.073915987 0 0 0.076798307 0.018626325 3.94E-11 10.40470592 -0.097401177 MALPPQEDATAS(ph)PPR ddPTM_K562_Paclitaxel_30min_R1 5 MALPPQEDATASPPR 15 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 MALPPQEDAT(0.325)AS(0.675)PPR;MALPPQEDAT(0.006)AS(0.994)PPR;MALPPQEDAT(0.083)AS(0.917)PPR;MALPPQEDAT(0.007)AS(0.993)PPR;MALPPQEDAT(0.038)AS(0.962)PPR 195.6 3.73E-09 490787200 16957.7 18185.9 21966.1 18866.3 17129.1 15832.4 18767.8 22353.4 12402.44 24143.3 TRUE FALSE 17195.16012 20171.49806 16420.48638 17656.29996 19462.37342 18640.05384 22328.89208 20454.33914 13593.74978 19222.88221 0.894515189 1.049348263 0.854215627 0.9185043 1.012458653 0.96968049 1.161578781 1.064062034 0.707165015 1 14.23053704 -6.760592545 24.99999817 0.997007813 0.93237957 0.047734217 0.117473699 73.51661826 2170284.488 0.036012584 0.043797153 1.74E-07 6.760592545 -0.064628244 MALPPQEDATAS(ph)PPRQK ddPTM_K562_Paclitaxel_30min_R1 4 MALPPQEDATASPPRQK 17 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 MALPPQEDAT(0.003)AS(0.997)PPRQK;MALPPQEDATAS(1)PPRQK;MALPPQEDAT(0.027)AS(0.973)PPRQK;MALPPQEDAT(0.005)AS(0.995)PPRQK 141.18 2.49E-08 736551000 13149.6 11702.8 21773 15016 12150.7 11197.9 10377.9 16080.2 14592 18850.3 TRUE FALSE 13333.73497 12980.55128 16276.13686 14052.94097 13805.83105 13183.69034 12347.05235 14714.08664 15993.6268 15008.59851 0.8884064 0.86487431 1.084454145 0.936325997 0.919861441 0.878409155 0.822665243 0.980377124 1.065630931 1 13.87350165 -8.518052709 23.02863929 1.029545109 0.916855623 0.345365125 0.066718715 94.28837589 449959.4226 0.045193528 0.018176733 3.03E-09 8.518052709 -0.112689486 MANSS(ph)PVLSK ddPTM_K562_Paclitaxel_30min_R1 4 MANSSPVLSK 10 0 Q9NXE8 Q9NXE8 CWC25 Pre-mRNA-splicing factor CWC25 homolog 1 MANS(0.003)S(0.997)PVLSK;MANS(0.025)S(0.975)PVLSK;MANS(0.03)S(0.97)PVLSK;MANS(0.032)S(0.967)PVLS(0.001)K 145.81 0.00046485 204558000 11772.8 11197.5 20222.4 14235.8 11132.3 10016.2 9743.8 14845.5 9716.6 16293.5 TRUE FALSE 11937.65552 12420.08092 15117.00501 13322.77951 12648.70773 11792.43244 11592.63518 13584.28211 10649.92284 12972.87576 0.920201176 0.957388412 1.165277869 1.026971949 0.975011861 0.909006812 0.893605659 1.047129593 0.820937705 1 13.6632107 -6.959218335 3.879200258 0.934843832 1.023063594 0.184475074 0.082096446 0.381626856 12.30298559 0.027151908 0.030270154 1.10E-07 6.959218335 0.088219763 MANSS(ph)PVLSKVPGYGLQVR ddPTM_K562_Paclitaxel_30min_R1 2 MANSSPVLSKVPGYGLQVR 19 1 Q9NXE8 Q9NXE8 CWC25 Pre-mRNA-splicing factor CWC25 homolog 1 MANS(0.054)S(0.946)PVLSKVPGYGLQVR;MANS(0.08)S(0.917)PVLS(0.003)KVPGYGLQVR 102.72 0.00054457 89180000 4510.6 4532.5 6375.3 4836.3 3833 3786.8 4232 5111.7 7840.8 6279.1 TRUE FALSE 4573.762316 5027.373678 4765.776666 4526.121364 4355.119493 4458.335811 5034.999907 4677.429179 8593.943874 4999.415973 0.914859324 1.005592194 0.95326668 0.90533002 0.871125651 0.891771326 1.007117618 0.935595118 1.718989562 1 12.28754386 -8.717461481 24.65588612 1.359494589 0.936272128 0.510015257 0.166200774 71.1561841 39893.2039 0.100966463 0.038161162 1.92E-09 8.717461481 -0.423222461 MAPALSGANLT(ph)SPRVPLSAYER ddPTM_K562_Paclitaxel_30min_R1 1 MAPALSGANLTSPRVPLSAYER 22 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 MAPALS(0.008)GANLT(0.523)S(0.284)PRVPLS(0.13)AY(0.055)ER 71.426 0.024509 402970000 816.07 747.6 790.02 806.94 716.47 637.6 814.54 876.68 845.95 1185.7 TRUE FALSE 827.4974978 829.2254962 590.5696802 755.1864801 814.0653439 750.6694077 969.0947128 802.2005619 927.2072773 944.0536892 0.87653648 0.878366883 0.625567896 0.799940182 0.862308313 0.79515542 1.026525 0.849740403 0.98215524 1 9.882725099 -7.744842968 24.99894841 0.952083524 0.803627639 0.476419954 0.080840388 232.4216807 350093.7151 0.031800274 0.024562602 1.80E-08 7.744842968 -0.148455886 MAPALSGANLTS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 MAPALSGANLTSPR 14 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 MAPALS(0.004)GANLT(0.179)S(0.818)PR;MAPALSGANLT(0.003)S(0.997)PR;MAPALS(0.003)GANLT(0.392)S(0.605)PR 150.12 6.14E-05 474465000 6433.7 6413.6 8148.5 7674 6217.4 7068.2 6306.3 7706.9 3997.83 8446.5 TRUE FALSE 6523.79165 7113.858537 6091.310396 7181.823988 7064.315141 8321.646028 7502.887504 7052.15074 4381.839434 6725.098664 0.970066311 1.057807312 0.905757774 1.06791355 1.050440372 1.23740133 1.115654636 1.048631566 0.651565078 1 12.71533972 -8.660724881 9.861593812 0.826600872 1.060533726 0.401105069 0.112858468 0.278435274 24.46647938 0.076453818 0.028766295 2.18E-09 8.660724881 0.233932854 MAPALSGANLTS(ph)PRVPLSAYER ddPTM_K562_Paclitaxel_30min_R1 1 MAPALSGANLTSPRVPLSAYER 22 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 MAPALSGANLT(0.103)S(0.45)PRVPLS(0.175)AY(0.271)ER 77.543 0.0013806 434890000 520.51 438.34 540.15 516.84 415.85 489.01 535.71 447.96 399.22 629.22 TRUE FALSE 527.7987459 486.1994436 403.782452 483.6921957 472.4958104 575.7290575 637.3581759 409.9030019 437.5668648 500.9846186 1.053522855 0.970487767 0.805977743 0.965483126 0.943134365 1.149195077 1.272211066 0.818194784 0.873413771 1 8.9686225 -5.256250291 20.8083145 0.979640288 1.053523169 0.027262788 0.13560431 290.8086884 1165683.719 0.036627301 0.28039817 5.54E-06 5.256250291 0.073882881 MAPPVDDLS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 MAPPVDDLSPK 11 0 Q92576-2;Q92576;E7ER40;E7EVH3 Q92576-2 PHF3 PHD finger protein 3 1 MAPPVDDLS(1)PK;MAPPVDDLS(1)PK 151.7 0.00050943 59441000 4507.9 4229.2 6585.1 4873.2 3604.9 3361.5 3453.8 5081.2 4086.1 6584 TRUE FALSE 4571.024508 4690.958358 4922.610062 4560.654764 4095.948411 3957.614827 4109.14052 4649.520344 4478.588162 5242.177186 0.871970623 0.894849257 0.939039236 0.869992486 0.7813449 0.754956326 0.783861433 0.886944523 0.854337426 1 12.3559504 -6.526907583 24.54487764 0.83006515 0.901788199 0.113163749 0.067213777 154.0924553 938767.1999 0.019784 0.025661353 2.97E-07 6.526907583 0.071723049 MAPTPIPT(ph)RSPSDSSTASTPVAEQIER ddPTM_K562_Paclitaxel_30min_R1 8 MAPTPIPTRSPSDSSTASTPVAEQIER 27 1 Q16643;Q16643-2;Q16643-3;D6R9Q9 Q16643 DBN1 Drebrin 1 MAPTPIPT(0.92)RS(0.075)PS(0.004)DSSTASTPVAEQIER;MAPT(0.002)PIPT(0.497)RS(0.497)PS(0.002)DSSTASTPVAEQIER;MAPT(0.002)PIPT(0.325)RS(0.325)PS(0.243)DS(0.05)S(0.019)T(0.019)AS(0.005)T(0.012)PVAEQIER;MAPT(0.01)PIPT(0.472)RS(0.472)PS(0.032)DS(0.004)S(0.002)T(0.002)AS(0.003)T(0.003)PVAEQIER;MAPT(0.003)PIPT(0.395)RS(0.395)PS(0.13)DS(0.044)S(0.015)T(0.015)AS(0.002)T(0.002)PVAEQIER;MAPT(0.013)PIPT(0.488)RS(0.488)PS(0.011)DSSTASTPVAEQIER;MAPT(0.001)PIPT(0.482)RS(0.482)PS(0.033)DS(0.001)ST(0.001)ASTPVAEQIER;MAPT(0.012)PIPT(0.49)RS(0.49)PS(0.007)DSSTASTPVAEQIER 104.57 1.66E-08 1077332000 6505.19 5935.98 7366.58 6927.81 5944.15 6395.19 5041.52 6865.02 6015.42 7380.31 TRUE FALSE 6596.28273 6584.090371 5506.79577 6483.491274 6753.843865 7529.287154 5998.122102 6281.793701 6593.227969 5876.198771 1.122542478 1.120467606 0.937135721 1.103347849 1.149355924 1.281319344 1.020748674 1.069023351 1.122022625 1 12.52066748 -3.938577978 16.52917335 1.096091366 95.0038153 0 0.089484698 0 0 0.021060969 0 0.000115192 3.938577978 93.90772393 MAPTPIPTRS(ph)PSDSSTASTPVAEQIER ddPTM_K562_Paclitaxel_30min_R1 5 MAPTPIPTRSPSDSSTASTPVAEQIER 27 1 Q16643;Q16643-2;Q16643-3;D6R9Q9 Q16643 DBN1 Drebrin 1 MAPT(0.001)PIPT(0.398)RS(0.566)PS(0.035)DSSTASTPVAEQIER;MAPTPIPT(0.286)RS(0.709)PS(0.005)DSSTASTPVAEQIER;MAPT(0.002)PIPT(0.196)RS(0.746)PS(0.054)DS(0.001)S(0.001)T(0.001)ASTPVAEQIER;MAPT(0.001)PIPT(0.051)RS(0.895)PS(0.051)DS(0.001)STASTPVAEQIER;MAPTPIPT(0.008)RS(0.984)PS(0.003)DS(0.001)S(0.001)T(0.001)AST(0.002)PVAEQIER 126.32 1.13E-14 2090462000 6586.64 5834.91 7677.5 6755.4 6093.57 6350.85 5645.84 7074.6 6483.31 7154.75 TRUE FALSE 6678.873282 6471.985206 5739.220171 6322.13888 6923.617399 7477.084077 6717.108667 6473.568572 7106.060894 5696.608023 1.172429849 1.136112083 1.007480267 1.1098076 1.21539298 1.312550214 1.179141805 1.136390032 1.247419669 1 12.47588742 -4.888930886 14.64341283 1.155946599 1.870154235 0.001031218 0.092860203 7968455.805 10567908.35 0.024287364 185575649.2 1.29E-05 4.888930886 0.714207635 MAPTPIPTRSPS(ph)DSSTASTPVAEQIER ddPTM_K562_Paclitaxel_30min_R1 2 MAPTPIPTRSPSDSSTASTPVAEQIER 27 1 Q16643;Q16643-2;Q16643-3;D6R9Q9 Q16643 DBN1 Drebrin 1 MAPT(0.003)PIPT(0.269)RS(0.269)PS(0.337)DS(0.046)S(0.014)T(0.018)AS(0.022)T(0.022)PVAEQIER;MAPTPIPT(0.068)RS(0.131)PS(0.292)DS(0.292)S(0.099)T(0.099)AS(0.008)T(0.012)PVAEQIER 119.43 2.51E-12 1312566200 1641.46 1631.53 2352.86 2179.95 1409.52 1597.42 1810.55 1993.57 1840.56 2488.55 TRUE FALSE 1664.445504 1809.665963 1758.851393 2040.137764 1601.520487 1880.700008 2154.092411 1824.203785 2017.354012 1981.382144 0.840042649 0.913335153 0.887689131 1.029653856 0.808284506 0.949185907 1.087166561 0.920672365 1.018154937 1 10.95229144 -7.524729139 24.9992092 1.002500469 0.901258219 0.384242553 0.065819731 68.57686289 926454.7095 0.024150261 0.018840156 2.99E-08 7.524729139 -0.10124225 MAQEDFELIQRIGS(ph)GT(ph)Y(ph)GDVY(ph)KAR ddPTM_K562_Paclitaxel_30min_R1 1 MAQEDFELIQRIGSGTYGDVYKAR 24 2 Q8IVH8-2 Q8IVH8-2 MAP4K3 Mitogen-activated protein kinase kinase kinase kinase 3 4 MAQEDFELIQRIGS(1)GT(1)Y(1)GDVY(1)KAR 43.799 0.019137 19605000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 MAS(ph)PPPSGPPSATHTPFHQSPVEEK ddPTM_K562_Paclitaxel_30min_R1 5 MASPPPSGPPSATHTPFHQSPVEEK 25 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 MAS(0.903)PPPS(0.082)GPPS(0.008)AT(0.006)HTPFHQSPVEEK;MAS(0.984)PPPS(0.015)GPPS(0.001)ATHTPFHQSPVEEK;MAS(0.991)PPPS(0.009)GPPSATHTPFHQSPVEEK;MAS(0.766)PPPS(0.234)GPPSATHTPFHQSPVEEK;MAS(0.726)PPPS(0.032)GPPS(0.01)AT(0.22)HT(0.011)PFHQSPVEEK 108.19 1.31E-06 196493000 14198.5 12334.1 25247.9 16744.1 11828.9 11634.7 11189.8 15904.4 11334.58 20819.1 TRUE FALSE 14397.32281 13680.77875 18873.75538 15670.20837 13440.19644 13697.95069 13313.00614 14553.22195 12423.31705 16576.15599 0.868556185 0.825328789 1.138608697 0.945346338 0.810815032 0.826364731 0.803141943 0.877961209 0.749469121 1 14.01682186 -6.75165729 23.19194234 0.835536203 0.949818487 0.195762764 0.097858776 126.1797975 299149.9096 0.029105537 0.037026441 1.77E-07 6.75165729 0.114282284 MASNIFGT(ph)PEENQASWAK ddPTM_K562_Paclitaxel_30min_R1 2 MASNIFGTPEENQASWAK 18 0 J3KT51;Q9UK76;Q9UK76-2;J3KSH8;Q9UK76-3 J3KT51 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 MASNIFGT(1)PEENQASWAK;MASNIFGT(0.886)PEENQAS(0.114)WAK 120.4 0.00018757 81002000 4835.4 4099.6 7255.3 5319.8 3986 3677.3 3392.1 5111.3 4979.1 6047.4 TRUE FALSE 4903.110518 4547.208192 5423.609783 4978.611839 4528.960684 4329.417523 4035.733267 4677.063161 5457.364802 4814.936561 1.01831259 0.944396283 1.12641355 1.033993237 0.940606512 0.89916398 0.838169562 0.97136548 1.13342403 1 12.23330107 -4.890389391 15.08377649 0.983382691 2.590787574 0.008971692 0.088023628 7543349.311 10233971.12 0.023676019 407915772.7 1.29E-05 4.890389391 1.607404884 MASPPPSGPPS(ph)ATHTPFHQSPVEEK ddPTM_K562_Paclitaxel_30min_R1 1 MASPPPSGPPSATHTPFHQSPVEEK 25 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 MAS(0.097)PPPS(0.352)GPPS(0.513)AT(0.038)HT(0.001)PFHQSPVEEK 76.693 0.0042081 8555300 1627.6 1132.4 2527 1793.8 1367.3 1100.8 1195.7 1917.1 1102.5 1998.1 TRUE FALSE 1650.391422 1256.039262 1889.027596 1678.753697 1553.549409 1296.011424 1422.577833 1754.230389 1208.400051 1590.886123 1.03740387 0.789521791 1.187405917 1.055231844 0.976530869 0.814647513 0.89420469 1.102675021 0.759576712 1 10.63561485 -7.008745259 23.75199712 0.916742769 1.013586312 0.129626466 0.126433752 504.5853401 1370454.884 0.04014727 0.043281467 9.80E-08 7.008745259 0.096843543 MASPPPSGPPSAT(ph)HTPFHQSPVEEK ddPTM_K562_Paclitaxel_30min_R1 1 MASPPPSGPPSATHTPFHQSPVEEK 25 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 MAS(0.001)PPPSGPPS(0.007)AT(0.965)HT(0.027)PFHQSPVEEK 113.36 2.33E-10 0 919.84 1021 1562.2 901.46 693.86 919.97 919.09 1149.4 724.44 1286.8 TRUE FALSE 932.7205979 1132.476233 1167.803289 843.6443904 788.3754791 1083.113762 1093.48253 1051.751296 794.0256989 1024.549454 0.910371476 1.105340722 1.139821299 0.823429643 0.769485042 1.057161037 1.067281355 1.026550053 0.774999875 1 10.00077391 -6.252437586 24.92698637 0.936549936 1.057194112 0.176354252 0.118857572 1205.312598 3337639.896 0.034477177 0.058606692 5.59E-07 6.252437586 0.120644176 MASST(ph)TPPLHMGT(ph)FFS(ph)VMGRR ddPTM_K562_Paclitaxel_30min_R1 1 MASSTTPPLHMGTFFSVMGRR 21 1 P78563-5 P78563-5 3 MAS(0.058)S(0.059)T(0.449)T(0.449)PPLHMGT(0.993)FFS(0.992)VMGRR 41.485 0.025463 6388500 2405.8 2424.3 2548.3 2595.4 2387 2584.3 2395 2519.8 3552.5 2667.7 TRUE FALSE 2439.488623 2688.993272 1904.950148 2428.942661 2712.149812 3042.58932 2849.438747 2305.727262 3893.733498 2124.021276 1.148523628 1.265991684 0.896860201 1.143558536 1.276893901 1.432466499 1.341530228 1.085548101 1.833189499 1 11.0525825 -6.817258573 3.512827755 1.344389808 1.106263467 0.183670389 0.224621849 0.387173017 9.705056711 0.068646306 0.081937457 1.52E-07 6.817258573 -0.238126341 MAT(ph)ANQTAQQPS(ph)SPAMRR ddPTM_K562_Paclitaxel_30min_R1 1 MATANQTAQQPSSPAMRR 18 1 Q9UQB9-3 Q9UQB9-3 2 MAT(0.641)ANQT(0.36)AQQPS(0.595)S(0.404)PAMRR 48.5 0.03094 6437300 1026.7 799.61 970.17 1158.5 1008.1 1010.1 1033.2 923.61 1059.3 1421.1 TRUE FALSE 1041.076968 886.9141239 725.2385846 1084.198995 1145.420287 1189.227052 1229.244306 845.1435655 1161.050498 1131.47904 0.920102742 0.783853781 0.640965108 0.958213946 1.01232126 1.051037633 1.086404841 0.746937005 1.026135224 1 10.14399414 -6.408732725 7.682176197 0.982838593 0.782452186 0.431176943 0.10633716 0.271676345 16.54032644 0.030909599 0.045903477 3.90E-07 6.408732725 -0.200386407 MATFPGPGS(ph)SPAR ddPTM_K562_Paclitaxel_30min_R1 2 MATFPGPGSSPAR 13 0 O43187 O43187 IRAK2 Interleukin-1 receptor-associated kinase-like 2 1 MATFPGPGS(0.735)S(0.264)PAR;MATFPGPGS(0.5)S(0.5)PAR 112.44 0.0040539 36825000 4505 4339.8 5640.9 5700 4502.3 4854.3 4754.9 4828.7 5023.8 5185.1 TRUE FALSE 4568.083899 4813.63404 4216.785029 5334.427512 5115.589485 5715.141947 5657.117453 4418.471795 5506.358437 4128.373774 1.106509282 1.165987942 1.021415516 1.292137729 1.239129441 1.384356713 1.370301664 1.070269321 1.333783891 1 12.01135788 -6.272682975 24.79078833 1.255583062 1.104772614 0.219915459 0.12158453 897.0780543 1977948.893 0.033249303 0.049825683 5.34E-07 6.272682975 -0.150810448 MCT(ph)T(ph)LFLLST(ph)LAMLWRR ddPTM_K562_Paclitaxel_30min_R1 1 MCTTLFLLSTLAMLWRR 17 1 Q00LT1 Q00LT1 PRCD Progressive rod-cone degeneration protein 3 MCT(0.886)T(0.886)LFLLS(0.243)T(0.985)LAMLWRR 46.796 0.030576 34398000 2839.3 3024.1 2658.6 2804.3 2903.7 3115.3 2684.2 3202.7 2282.6 2868.9 TRUE FALSE 2879.05896 3354.281465 1987.403549 2624.44475 3299.2331 3667.754714 3193.512938 2930.610644 2501.853929 2284.216605 1.260414163 1.468460328 0.870059146 1.148947409 1.444360877 1.605694795 1.39807798 1.282982812 1.095278759 1 11.15748375 -8.843045884 3.02454269 1.005213505 1.314429146 0.241887765 0.189883078 0.384181931 6.638932772 0.197870156 0.054065222 1.44E-09 8.843045884 0.30921564 MDAPASGSACSGLNKQEPGGSHGS(ph)ETEDTGR ddPTM_K562_Paclitaxel_30min_R1 4 MDAPASGSACSGLNKQEPGGSHGSETEDTGR 31 1 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 MDAPASGSACSGLNKQEPGGS(0.006)HGS(0.944)ET(0.048)EDT(0.002)GR;MDAPASGSACSGLNKQEPGGS(0.021)HGS(0.891)ET(0.066)EDT(0.021)GR;MDAPASGSACSGLNKQEPGGS(0.01)HGS(0.707)ET(0.25)EDT(0.033)GR;MDAPASGSACSGLNKQEPGGS(0.054)HGS(0.875)ET(0.07)EDT(0.001)GR 100.37 5.34E-12 130383000 4048.02 3888.87 7270.9 4610.66 3795.57 3145.74 3143.54 4395.55 4885.79 5860.15 TRUE FALSE 4104.704769 4313.469978 5435.27137 4314.952904 4312.590894 3703.592821 3740.010305 4022.120591 5355.09196 4665.848213 0.879733884 0.924477133 1.164905312 0.924794958 0.924288724 0.793766246 0.801571361 0.86203417 1.147720996 1 12.18792366 -5.313358136 5.550341432 0.941013605 0.879378886 0.025958663 0.120168293 0.869914172 60.678846 0.031808537 0.143849943 4.86E-06 5.313358136 -0.061634718 MDGEAT(ph)SPLPR ddPTM_K562_Paclitaxel_30min_R1 1 MDGEATSPLPR 11 0 Q86UU1-3;Q86UU1-2;Q86UU1;A0A087WZL0 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 MDGEAT(0.563)S(0.437)PLPR 110.08 0.013083 8687400 1395.1 1571.9 2713.7 2003.8 1693.3 1621.1 1453.4 1918.7 1269.3 1812.7 TRUE FALSE 1414.635704 1743.525358 2028.592872 1875.285237 1923.956128 1908.579324 1729.175063 1755.694459 1391.221936 1443.270745 0.98015962 1.208037621 1.405552548 1.29933018 1.333052814 1.322398677 1.198094723 1.216469235 0.963936906 1 10.49512625 -8.703758151 4.123575628 0.977587122 1.25851419 0.484233582 0.108599243 0.181882799 5.978047272 0.093055565 0.029563166 1.98E-09 8.703758151 0.280927068 MDGEATS(ph)PLPR ddPTM_K562_Paclitaxel_30min_R1 1 MDGEATSPLPR 11 0 Q86UU1-3;Q86UU1-2;Q86UU1;A0A087WZL0 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 MDGEAT(0.023)S(0.977)PLPR 91.313 0.016511 14632000 3013.4 3239.8 4117.9 3394.9 2976.7 2817.6 2647.6 3939.4 2486.3 4198.6 TRUE FALSE 3055.596897 3593.53232 3078.285215 3177.166309 3382.176936 3317.261799 3149.968279 3604.723381 2725.120224 3342.923015 0.914049436 1.074967118 0.920836406 0.950415638 1.011742394 0.992323719 0.942279635 1.078314805 0.815190841 1 11.70689442 -8.761888045 25 0.907595482 0.984911738 0.172139386 0.068425698 19.71006179 1097671.496 0.049922306 0.015892778 1.73E-09 8.761888045 0.077316256 MDQLEAEEAKLDK ddPTM_K562_Paclitaxel_30min_R1 1 MDQLEAEEAKLDK 13 1 A6NCM1 A6NCM1 IQCA1L IQ and AAA domain-containing protein 1-like 0 42.809 0.029118 29856000 1771.3 1780.7 1055 1913.8 1892 1936.5 2170.2 1902.3 1599.6 1955.5 FALSE TRUE 1796.103665 1975.122848 788.6522019 1791.057434 2149.722432 2279.911085 2581.984121 1740.687741 1753.248727 1556.968027 1.15359059 1.268569948 0.506530763 1.150349528 1.380710712 1.464327492 1.658341133 1.117998386 1.12606598 1 10.6045236 -6.522208842 22.3309982 1.318821095 0.975960507 0.228940328 0.256309285 8.585406214 286215.5952 0.077891485 0.102127701 3.00E-07 6.522208842 -0.342860588 MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFS(ph)PTMGR ddPTM_K562_Paclitaxel_30min_R1 5 MDRDPLGGLADMFGQMPGSGIGTGPGVIQDRFSPTMGR 38 2 H0Y3P2;D3DQV9;P78344-2;P78344;H0YCH5 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 MDRDPLGGLADMFGQMPGS(0.102)GIGT(0.333)GPGVIQDRFS(0.397)PT(0.168)MGR;MDRDPLGGLADMFGQMPGS(0.089)GIGT(0.089)GPGVIQDRFS(0.558)PT(0.264)MGR;MDRDPLGGLADMFGQMPGS(0.056)GIGT(0.049)GPGVIQDRFS(0.701)PT(0.194)MGR;MDRDPLGGLADMFGQMPGS(0.174)GIGT(0.027)GPGVIQDRFS(0.57)PT(0.229)MGR;MDRDPLGGLADMFGQMPGS(0.022)GIGT(0.022)GPGVIQDRFS(0.818)PT(0.138)MGR 59.838 0.00016255 279062000 3191.7 4014.57 4110.73 3980.82 3106.09 3444.64 4315.22 5127.5 3699.86 6159.63 TRUE FALSE 3236.393647 4452.894329 3072.925371 3725.508023 3529.192045 4055.498539 5134.010468 4691.88687 4055.248084 4904.294025 0.659910199 0.907958272 0.626578536 0.759642061 0.719612655 0.8269281 1.04683986 0.956689555 0.826877031 1 12.25982976 -7.549579325 5.254440729 0.953661409 0.742157712 0.592602619 0.086912727 0.132171947 10.01199898 0.032516368 0.0255818 2.82E-08 7.549579325 -0.211503697 MDRT(ph)PPPPTLS(ph)PAAITVGR ddPTM_K562_Paclitaxel_30min_R1 1 MDRTPPPPTLSPAAITVGR 19 1 H7C4H9;E7EX82;Q8NDX5-2;Q8NDX5;Q8NDX5-7 H7C4H9 PHC3 Polyhomeotic-like protein 3 2 MDRT(1)PPPPT(0.197)LS(0.71)PAAIT(0.093)VGR 84.214 0.013986 25353000 1824.8 1506.8 2228.6 1940 1730 1400.4 1862.4 2194.5 1124.7 2273.7 TRUE FALSE 1850.35283 1671.31752 1665.962367 1815.577083 1965.655289 1648.741277 2215.780678 2008.063527 1232.73246 1810.318692 1.022114415 0.923217292 0.920259165 1.002904677 1.085806216 0.910746425 1.223972711 1.109232057 0.680947761 1 10.82202798 -4.870635047 18.26561002 0.993220932 7.689223884 0.002907138 0.137824975 3281.498365 465980.5537 0.033025844 5261.91595 1.35E-05 4.870635047 6.696002953 MDRT(ph)PPPPTLSPAAITVGR ddPTM_K562_Paclitaxel_30min_R1 1 MDRTPPPPTLSPAAITVGR 19 1 H7C4H9;E7EX82;Q8NDX5-2;Q8NDX5;Q8NDX5-7 H7C4H9 PHC3 Polyhomeotic-like protein 3 1 MDRT(1)PPPPTLSPAAITVGR 82.774 0.029258 24532000 145.95 108.56 220.82 169.42 52.204 136.76 0 0 157.95 222.46 TRUE FALSE 147.9937503 120.4129479 165.0712599 158.5541595 59.31506862 161.0124658 0 0 173.1218032 177.1225299 0.83554447 0.679828523 0.93196083 0.895166525 0.334881557 0.909045653 0 0 0.977412661 1 7.468603924 -6.753419156 24.99202155 0.478653258 0.831377939 0.136873519 0.349551112 311.7517165 971452.5436 0.103803961 0.131601645 1.76E-07 6.753419156 0.352724681 MDS(ph)FDEDLARPSGLLAQER ddPTM_K562_Paclitaxel_30min_R1 3 MDSFDEDLARPSGLLAQER 19 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 MDS(1)FDEDLARPSGLLAQER;MDS(1)FDEDLARPSGLLAQER;MDS(1)FDEDLARPSGLLAQER 98.76 0.00065293 137896000 2504.72 2139.35 3163.46 2213.49 2153.94 1908.76 2034.83 2318.41 2083.49 2576.91 TRUE FALSE 2539.793808 2372.931468 2364.805398 2071.526659 2447.343095 2247.251786 2420.92837 2121.446599 2283.618524 2051.734328 1.237876548 1.156549089 1.152588503 1.009646634 1.192816761 1.09529375 1.179942421 1.033977241 1.113018627 1 11.00262822 -2.000000228 0.045334158 0.740510119 1.777471962 0.405776528 0.059583448 639.8207579 2.203814366 12.74775836 48.26899613 0.009999995 2.000000228 1.036961843 MDST(ph)NADALY(ph)VR ddPTM_K562_Paclitaxel_30min_R1 1 MDSTNADALYVR 12 0 K7EK03;K7EPP7;K7EIH8;A0A6I8PUC2;A0A6I8PU89;A0A6I8PLE7;K7ER44;A0A6I8PRZ0;A0A6I8PR89;A0A6I8PIK4;A0A6I8PS32;A0A6I8PUD4;A0A6I8PU73;Q99615-2;Q99615 K7EK03 DNAJC7 DnaJ homolog subfamily C member 7 2 MDS(0.234)T(0.766)NADALY(1)VR 53.491 0.030156 0 0 66.59 0 0 74.78 0 0 0 0 0 TRUE FALSE 0 73.86052139 0 0 84.96630204 0 0 0 0 0 0 MDYEDDRLR ddPTM_K562_Paclitaxel_30min_R1 1 MDYEDDRLR 9 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 0 120.87 0.020288 50482000 2367.3 2206.6 3034.6 2935.5 2577.7 1887.8 2076.3 2799.5 1509.4 3391 FALSE TRUE 2400.449504 2447.52405 2268.477699 2747.230169 2928.826381 2222.574824 2470.267086 2561.665001 1654.384614 2699.912339 0.889084238 0.906519821 0.840204204 1.017525691 1.084785731 0.823202588 0.914943441 0.94879562 0.612754937 1 11.39869685 MEAENS(ph)Y(ph)TENAGK ddPTM_K562_Paclitaxel_30min_R1 1 MEAENSYTENAGK 13 0 A0A087X014;Q7Z570 A0A087X014 ZNF804A Zinc finger protein 804A 2 MEAENS(0.955)Y(0.968)T(0.077)ENAGK 80.871 0.021431 17880000 0 0 65.918 70.209 0 108.17 0 0 63.922 73.249 TRUE FALSE 0 0 49.27618564 65.70610898 0 127.3524307 0 0 70.06199371 58.32081359 0 0 0.84491595 1.126632242 0 2.183653191 0 0 1.201320582 1 5.865938941 -5.757711642 24.90728782 0.763566148 3.05E-05 0.194492784 0.644337784 147.164635 983254.2588 0.163059057 0.398112833 1.75E-06 5.757711642 -0.763535691 MEEWDRY(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 MEEWDRYPR 9 1 P98174 P98174 FGD1 "FYVE, RhoGEF and PH domain-containing protein 1" 1 MEEWDRY(1)PR 111.95 0.0025755 20595000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 MEIGDTLSTAEESS(ph)PPKSR ddPTM_K562_Paclitaxel_30min_R1 1 MEIGDTLSTAEESSPPKSR 19 1 Q9BYW2;C9JG86;Q9BYW2-3;Q9BYW2-2 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 MEIGDTLSTAEES(0.382)S(0.617)PPKS(0.001)R 92.136 0.00104 29001000 1014.7 990.8 1950.8 1373.9 894.77 755.02 841.38 1155.6 1098.9 1266.2 TRUE FALSE 1028.908931 1098.978895 1458.296413 1285.784203 1016.652823 888.912196 1001.027463 1057.424567 1204.454255 1008.147745 1.020593396 1.090097062 1.446510613 1.275392629 1.00843634 0.8817281 0.992937263 1.048878572 1.194719981 1 9.977491367 -6.770697442 24.71642677 1.015182193 1.216742057 0.339018094 0.127552677 203.4973983 543279.1117 0.042922586 0.049346897 1.70E-07 6.770697442 0.201559864 MELAGSNTTASS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 1 MELAGSNTTASSPAR 15 0 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9;A0A0C4DGI9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 MELAGSNTTAS(0.423)S(0.577)PAR 165.24 3.53E-05 47121000 2003.2 1640.9 2220.8 2050.8 1526.5 1722.7 1448.8 2001.3 1795 2104.1 TRUE FALSE 2031.25098 1820.059011 1660.131573 1919.270867 1734.435144 2028.196657 1723.702237 1831.277073 1967.41777 1675.283265 1.212482105 1.086418667 0.990955744 1.14563961 1.035308583 1.210658937 1.028901961 1.093114885 1.17437917 1 10.71018934 -11.4071054 3.344586976 0.99892209 1.10366404 0.162953555 0.073092778 53675187.99 79276348.25 560466.3193 0.017529046 3.92E-12 11.4071054 0.10474195 MELDEDGLTFNPTLEVGS(ph)DR ddPTM_K562_Paclitaxel_30min_R1 1 MELDEDGLTFNPTLEVGSDR 20 0 Q9UFH2 Q9UFH2 DNAH17 "Dynein heavy chain 17, axonemal" 1 MELDEDGLT(0.001)FNPT(0.037)LEVGS(0.963)DR 59.281 0.024813 18967000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 MELGAPEEMGQVPPLDS(ph)RPSSPALYFTHDASLVHK ddPTM_K562_Paclitaxel_30min_R1 1 MELGAPEEMGQVPPLDSRPSSPALYFTHDASLVHK 35 1 Q9Y3Q8;Q9Y3Q8-2 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 MELGAPEEMGQVPPLDS(0.324)RPS(0.324)S(0.324)PALY(0.01)FT(0.017)HDAS(0.002)LVHK 67.072 1.36E-05 10360000 1255.6 1215.2 1912.3 1280.4 1000.9 1105.2 1074.2 1849.9 1254.4 2334.2 TRUE FALSE 1273.182274 1347.879646 1429.516214 1198.280875 1137.239525 1301.191702 1278.023842 1692.739448 1374.890725 1858.488759 0.685063209 0.725255743 0.769182061 0.644760895 0.611916279 0.700134287 0.68766832 0.910815005 0.739789637 1 10.85991425 -8.987148079 0.750498612 0.991516374 0.686019573 0.64259232 0.068193222 0.448888504 0.581227612 0.06762767 0.026029642 1.03E-09 8.987148079 -0.305496801 MELGAPEEMGQVPPLDSRPSSPALYFT(ph)HDASLVHK ddPTM_K562_Paclitaxel_30min_R1 1 MELGAPEEMGQVPPLDSRPSSPALYFTHDASLVHK 35 1 Q9Y3Q8;Q9Y3Q8-2 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 MELGAPEEMGQVPPLDS(0.218)RPS(0.218)S(0.218)PALY(0.053)FT(0.293)HDAS(0.001)LVHK 73.919 3.60E-06 16141000 831.85 1050.5 1461.3 1161.5 875.58 812.67 970.4 1357 859.41 1889.1 TRUE FALSE 843.4984665 1165.197143 1092.376742 1087.006589 994.8488197 956.785614 1154.528334 1241.71438 941.9601704 1504.100383 0.560799316 0.774680437 0.726265849 0.722695507 0.661424484 0.636118191 0.767587288 0.825552865 0.626261506 1 10.55468514 -15 0.27325784 3.055361082 0.686246288 0.584503817 0.075835546 154.8159744 1.499947894 179.7975605 0.09068492 1.00E-15 15 -2.369114794 MENSWVQSPPGPASCQPGRQPLS(ph)PSATGDTR ddPTM_K562_Paclitaxel_30min_R1 2 MENSWVQSPPGPASCQPGRQPLSPSATGDTR 31 1 A0A087WVC5;A0A0C4DH65;A5PL33-3;A5PL33-2;A5PL33 A0A087WVC5 KRBA1 Protein KRBA1 1 MENS(0.001)WVQS(0.076)PPGPAS(0.017)CQPGRQPLS(0.668)PS(0.095)AT(0.119)GDT(0.025)R;MENS(0.001)WVQS(0.028)PPGPAS(0.022)CQPGRQPLS(0.459)PS(0.459)AT(0.031)GDT(0.002)R 54.596 0.0024589 60763000 903.64 928.08 1135.88 1062.36 903.31 887.68 929.87 1110.43 976.77 1312.27 TRUE FALSE 916.293748 1029.410913 849.1130456 994.2249845 1026.356115 1045.097584 1106.307978 1016.09204 1070.593123 1044.828654 0.876979919 0.985243762 0.812681623 0.951567495 0.982320031 1.000257392 1.058841538 0.972496339 1.024659038 1 10.02905065 -6.69097615 2.656123667 1.009814797 0.899267361 0.560006733 0.045332331 0.203593523 2.923599906 0.014009247 0.018442196 2.04E-07 6.69097615 -0.110547436 MEQTALS(ph)PEVR ddPTM_K562_Paclitaxel_30min_R1 1 MEQTALSPEVR 11 0 P12980 P12980 LYL1 Protein lyl-1 1 MEQT(0.003)ALS(0.997)PEVR 146.67 0.00027568 87135000 1967.4 1981.9 2534 2300 1925.8 1958 1874.8 2241.8 1681.9 2272.7 TRUE FALSE 1994.94967 2198.290544 1894.26036 2152.488294 2188.126564 2305.223808 2230.533513 2051.345097 1843.45401 1809.522492 1.102472988 1.214845659 1.046828856 1.189533871 1.209228718 1.2739404 1.232664154 1.133638905 1.018751642 1 10.82139333 -8.69931527 3.24061679 1.001376342 1.182524387 0.549684247 0.061414449 0.193035732 3.808419402 0.056800254 0.017068338 2.00E-09 8.69931527 0.181148045 MEREDS(ph)S(ph)EEEEEEIDDEEIER ddPTM_K562_Paclitaxel_30min_R1 5 MEREDSSEEEEEEIDDEEIER 21 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 MEREDS(1)S(1)EEEEEEIDDEEIER;MEREDS(1)S(1)EEEEEEIDDEEIER;MEREDS(1)S(1)EEEEEEIDDEEIER;MEREDS(1)S(1)EEEEEEIDDEEIER;MEREDS(1)S(1)EEEEEEIDDEEIER 119.5 6.97E-06 452716000 9516.39 8614.96 13587.77 10522.27 8526.01 9193.41 8264.28 10714.32 10183.31 12224.94 TRUE FALSE 9649.648821 9555.570467 10157.36941 9847.418698 9687.396909 10823.73218 9832.383988 9804.071639 11161.46243 9733.490518 0.991386266 0.981720838 1.043548498 1.011704761 0.995264432 1.112009321 1.010160124 1.007251368 1.146707073 1 13.24874155 -6.055755224 0.601819523 1.052073669 0.973188577 0.170895893 0.047926437 3.040684281 1.558750884 0.027858621 0.148411864 8.80E-07 6.055755224 -0.078885092 MESLSSHRIDEDGENTQIEDTEPMS(ph)PVLNSK ddPTM_K562_Paclitaxel_30min_R1 4 MESLSSHRIDEDGENTQIEDTEPMSPVLNSK 31 1 A6NNK5;Q12888;Q12888-3;Q12888-2;C9JXV0 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 MESLSSHRIDEDGENTQIEDT(0.002)EPMS(0.966)PVLNS(0.032)K;MESLSSHRIDEDGENT(0.001)QIEDT(0.078)EPMS(0.903)PVLNS(0.018)K;MESLSSHRIDEDGENTQIEDT(0.049)EPMS(0.947)PVLNS(0.004)K;MESLSSHRIDEDGENT(0.001)QIEDT(0.045)EPMS(0.949)PVLNS(0.006)K 97.771 7.87E-12 376117000 7199.2 6434.53 12274.2 8559.8 6318.72 5866.33 5330.13 7853.6 8614.4 9225.7 TRUE FALSE 7300.011011 7137.073746 9175.426405 8010.81274 7179.436641 6906.641258 6341.494342 7186.387659 9441.85161 7345.497276 0.993807599 0.971625675 1.249122566 1.090574598 0.977392867 0.940255098 0.863317227 0.978339163 1.285393113 1 12.84264445 MET(ph)KNIYECPVY(ph)KT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 METKNIYECPVYKTR 15 2 Q9UFH2 Q9UFH2 DNAH17 "Dynein heavy chain 17, axonemal" 3 MET(0.989)KNIY(0.011)ECPVY(1)KT(1)R 59.537 0.021166 248960000 2271.1 2166.4 2932.9 2738.6 2965.7 2505 2006.6 2290.8 1533.9 2129.6 TRUE FALSE 2302.902407 2402.934878 2192.453121 2562.958454 3369.67855 2949.226578 2387.341875 2096.182241 1681.237949 1695.586351 1.358174655 1.417170454 1.293035368 1.511546995 1.987323469 1.739354988 1.407974223 1.23625803 0.991537793 1 10.72756854 -8.4047064 2.092974704 0.999075691 1.549174386 0.570230681 0.189936412 0.286011482 2.30146928 0.172447808 0.062237606 3.94E-09 8.4047064 0.550098695 MET(ph)T(ph)FGPAFSAVTTITK ddPTM_K562_Paclitaxel_30min_R1 1 METTFGPAFSAVTTITK 17 0 A0A087WUB0;H3BR17;Q6Q0C0 A0A087WUB0 TRAF7 E3 ubiquitin-protein ligase TRAF7 2 MET(0.996)T(0.963)FGPAFS(0.005)AVT(0.012)T(0.012)IT(0.012)K 49.595 0.030893 0 429.68 445.87 360.1 402.55 431.57 400.3 338.06 328.38 481.12 399.97 TRUE FALSE 435.6968457 494.5515944 269.1883013 376.7322447 490.3571405 471.2875845 402.2051202 300.4820693 527.3337257 318.4558945 1.368154439 1.552967312 0.845292256 1.182996614 1.539796088 1.479914779 1.262985321 0.943559452 1.655908196 1 8.314949766 -10.32500141 10.12083913 1.000000007 1.303006891 0.121841009 0.251662197 0 0 0.245411978 0.059521147 4.73E-11 10.32500141 0.303006884 METEADAPS(ph)PAPSLGER ddPTM_K562_Paclitaxel_30min_R1 2 METEADAPSPAPSLGER 17 0 Q12873-2;Q12873;Q12873-3 Q12873-2 CHD3 Chromodomain-helicase-DNA-binding protein 3 1 METEADAPS(1)PAPSLGER;METEADAPS(1)PAPSLGER 283.22 1.10E-132 158107000 6218.8 5414.2 8030.4 6939.8 5866.6 5515.6 6202.4 6852.9 5013.1 7213.4 TRUE FALSE 6305.882387 6005.340666 6003.026201 6494.712289 6665.730242 6493.714217 7379.273021 6270.703371 5494.630654 5743.30512 1.097953575 1.045624521 1.045221536 1.130831839 1.160608761 1.130658059 1.284847813 1.091828353 0.956701854 1 12.48766549 -8.666618468 5.188011162 0.979778009 1.127128993 0.454099292 0.064405106 0.198261838 8.319925114 0.051920457 0.018201658 2.15E-09 8.666618468 0.147350983 METT(ph)FGPAFSAVTT(ph)IT(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 METTFGPAFSAVTTITK 17 0 A0A087WUB0;H3BR17;Q6Q0C0 A0A087WUB0 TRAF7 E3 ubiquitin-protein ligase TRAF7 3 MET(0.385)T(0.582)FGPAFS(0.049)AVT(0.108)T(0.888)IT(0.989)K 49.537 0.029853 0 0 0 0 0 0 63.337 0 0 0 0 TRUE FALSE 0 0 0 0 0 74.56892765 0 0 0 0 0 METVSNASSSS(ph)NPSS(ph)PGR ddPTM_K562_Paclitaxel_30min_R1 3 METVSNASSSSNPSSPGR 18 0 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 2 METVSNAS(0.002)S(0.001)S(0.016)S(0.981)NPS(0.001)S(0.999)PGR;METVSNASSS(0.003)S(0.996)NPS(0.322)S(0.678)PGR;METVSNAS(0.032)S(0.04)S(0.218)S(0.709)NPS(0.235)S(0.765)PGR 215.51 2.81E-24 53855200 6196.7 6631.9 8073.5 7016.5 6159 6098.4 5979.7 7227.7 4733.9 7634.9 TRUE FALSE 6283.472918 7355.99327 6035.245073 6566.493095 6997.960073 7179.865614 7114.316859 6613.661771 5188.612247 6078.903189 1.033652408 1.210085609 0.992818093 1.080210178 1.151187945 1.181112018 1.170329028 1.087969584 0.853544149 1 12.56959533 -8.654190149 6.201380312 0.929239325 1.11875785 0.521832994 0.071767429 0.154576741 7.713449326 0.049967503 0.018184015 2.22E-09 8.654190149 0.189518525 METVSNASSSSNPS(ph)SPGRIK ddPTM_K562_Paclitaxel_30min_R1 2 METVSNASSSSNPSSPGRIK 20 1 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 METVSNASSSSNPS(0.565)S(0.435)PGRIK;METVSNASSSSNPS(0.5)S(0.5)PGRIK 102.27 0.00040449 69558000 2821.6 2043.5 4213.3 2980.59 2096.02 1982.39 1799.17 2344.47 4954.2 3039.9 TRUE FALSE 2861.111105 2266.616241 3149.600306 2789.428298 2381.53341 2333.939032 2140.553115 2145.29264 5430.073046 2420.366711 1.182098189 0.936476374 1.30129054 1.152481682 0.983955612 0.964291494 0.884392066 0.88635025 2.243491873 1 11.24100993 -8.722711391 24.99999902 1.621752608 1.036563032 0.367966637 0.306849163 133.7103778 86313.96211 0.191377414 0.072331031 1.89E-09 8.722711391 -0.585189576 METVSNASSSSNPSS(ph)PGR ddPTM_K562_Paclitaxel_30min_R1 12 METVSNASSSSNPSSPGR 18 0 Q9NTI5-2;Q9NTI5;A9IYQ1 Q9NTI5-2 PDS5B Sister chromatid cohesion protein PDS5 homolog B 1 METVSNAS(0.001)S(0.001)S(0.001)S(0.001)NPS(0.047)S(0.951)PGR;METVSNASSS(0.001)S(0.001)NPS(0.017)S(0.981)PGR;METVSNASSSSNPS(0.08)S(0.92)PGR;METVSNASSSSNPS(0.229)S(0.771)PGR;METVSNAS(0.002)S(0.002)S(0.002)S(0.004)NPS(0.057)S(0.935)PGR;METVSNAS(0.001)S(0.001)SSNPS(0.049)S(0.949)PGR;METVSNASSSSNPS(0.012)S(0.988)PGR;METVSNASSSSNPS(0.002)S(0.998)PGR;METVSNASSSSNPS(0.001)S(0.999)PGR;METVSNASSSSNPSS(1)PGR;METVSNASSSSNPS(0.071)S(0.929)PGR;METVSNASSSSNPS(0.003)S(0.997)PGR 362.61 0 1064795000 36752.7 37468.9 47570.6 41617.5 37381.5 35112.7 35933.1 42860.8 31860.5 45306.7 TRUE FALSE 37267.35119 41559.88121 35560.81368 38948.33982 42473.49317 41339.44434 42751.21814 39219.50751 34920.84338 36073.16967 1.033104424 1.152099513 0.985796757 1.07970384 1.177426147 1.145988687 1.185125081 1.087220997 0.968055863 1 15.13863857 -8.69200587 5.206918583 0.984194392 1.11000469 0.397918952 0.060170072 0.19887869 9.722734588 0.047019192 0.016247988 2.03E-09 8.69200587 0.125810298 MEVGPFSTGQES(ph)PTAENAR ddPTM_K562_Paclitaxel_30min_R1 1 MEVGPFSTGQESPTAENAR 19 0 Q9Y4W2-3;Q9Y4W2-2;Q9Y4W2 Q9Y4W2-3 LAS1L Ribosomal biogenesis protein LAS1L 1 MEVGPFS(0.008)T(0.016)GQES(0.973)PT(0.003)AENAR 130.01 1.62E-07 20234000 565.56 517.58 817.19 665.43 1320.8 730.84 795.5 925.43 699.83 826.96 TRUE FALSE 573.4795849 574.0911347 610.8802776 622.7522982 1500.715321 860.4442125 946.4419722 846.8089451 767.0517984 658.4250981 0.870986824 0.871915631 0.927790085 0.94582102 2.279249873 1.30682171 1.437433012 1.286112798 1.164979586 1 9.36287552 -6.562890101 24.99999648 1.439965149 0.896463894 0.377834798 0.318939242 153.3353515 95806.55078 0.093755723 0.121038272 2.74E-07 6.562890101 -0.543501254 MEVGPFSTGQESPT(ph)AENAR ddPTM_K562_Paclitaxel_30min_R1 1 MEVGPFSTGQESPTAENAR 19 0 Q9Y4W2-3;Q9Y4W2-2;Q9Y4W2 Q9Y4W2-3 LAS1L Ribosomal biogenesis protein LAS1L 1 MEVGPFS(0.015)T(0.057)GQES(0.277)PT(0.651)AENAR 105.79 0.0015858 18679000 552.07 677.23 625.87 550.8 1149 590.88 462.48 765.86 674.25 919.88 TRUE FALSE 559.8006833 751.1722616 467.8613778 515.4741533 1305.513253 695.6642716 550.2331657 700.7954127 739.0147251 732.4079511 0.764329063 1.025620026 0.638798879 0.703807424 1.782494648 0.949831676 0.751265964 0.956837527 1.00902062 1 9.516503643 MEY(ph)DEKLAR ddPTM_K562_Paclitaxel_30min_R1 2 MEYDEKLAR 9 1 Q6ZN54-6;Q6ZN54-3;Q6ZN54-5;H3BNN0;H3BRA7;H3BQ81;H3BQH5;H3BMP4;H3BT87;H3BSH6;Q6ZN54-2 Q6ZN54-6 DEF8 Differentially expressed in FDCP 8 homolog 1 MEY(1)DEKLAR;MEY(1)DEKLAR 74.376 0.020361 43770000 164.99 137.13 323.58 313.32 246.922 287.16 177.035 220.38 247.963 418.47 TRUE FALSE 167.300369 152.1023171 241.888227 293.2250576 280.5569568 338.0837941 210.6264671 201.6573434 271.7809541 333.1855843 0.502123672 0.456509298 0.725986472 0.880065259 0.842044104 1.014701146 0.632159604 0.605240301 0.815704421 1 8.380182172 -5.858817327 3.95794825 0.810570079 0.477454429 0.537832048 0.126310364 0.176864093 5.116179809 0.035756131 0.083416078 1.38E-06 5.858817327 -0.33311565 MFDRNT(ph)KRDIT(ph)LEAS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 MFDRNTKRDITLEASR 16 3 E5RFR9;A0A590UJJ1;A0A590UJY3;P63151;P63151-2 E5RFR9 PPP2R2A Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B alpha isoform 3 MFDRNT(1)KRDIT(1)LEAS(1)R;MFDRNT(1)KRDIT(1)LEAS(1)R 63.727 0.021228 298611000 4359.2 3737 4467.7 4207.1 3815.3 3794.6 3465.3 3943.7 4233.6 4598.7 TRUE FALSE 4420.242249 4145.018298 3339.773879 3937.275436 4335.008454 4467.519031 4122.822585 3608.658069 4640.256196 3661.482416 1.207227496 1.13206014 0.91213708 1.075322776 1.183949002 1.22013942 1.125998193 0.985572962 1.267316259 1 11.83821215 -5.51400374 24.97057099 1.098216232 1.188435708 0.091713437 0.10460385 981.1587894 2760551.609 0.027088952 0.081464542 3.06E-06 5.51400374 0.090219476 MFPTGFS(ph)SPSPSAAAAAQEVR ddPTM_K562_Paclitaxel_30min_R1 1 MFPTGFSSPSPSAAAAAQEVR 21 0 A0A669KAU9;A0A669KAX4;Q13620-1 A0A669KAU9 CUL4B Cullin-4B 1 MFPT(0.005)GFS(0.383)S(0.328)PS(0.242)PS(0.041)AAAAAQEVR 92.31 0.00061726 7155400 301.44 289.42 279.87 435 267.93 218.96 279.98 341.81 307.5 471.07 TRUE FALSE 305.66109 321.0198544 209.2133571 407.101047 304.4266021 257.7894816 333.1047434 312.771107 337.0367489 375.0656754 0.814953514 0.855903047 0.557804595 1.085412699 0.811662122 0.687318245 0.888123775 0.833910239 0.898607287 1 8.550999429 -9.067790625 1.053043055 0.999871032 0.809906954 0.173849198 0.127292454 1.104089193 2.708271193 0.119455578 0.038984552 8.55E-10 9.067790625 -0.189964078 MFT(ph)QRGTMTRHMR ddPTM_K562_Paclitaxel_30min_R1 1 MFTQRGTMTRHMR 13 2 Q96JB3-2;Q96JB3 Q96JB3-2 HIC2 Hypermethylated in cancer 2 protein 1 MFT(0.875)QRGT(0.123)MT(0.003)RHMR 71.349 0.028883 6678400 331.64 248.12 329.52 352.83 307.56 339.23 388.48 367.08 306.13 433.18 TRUE FALSE 336.2839832 275.2105807 246.3286005 330.201063 349.454879 399.3876775 462.192052 335.8942628 335.5351543 344.8976782 0.975025361 0.797948488 0.714207767 0.957388477 1.013213197 1.157988884 1.340084556 0.973895401 0.972854199 1 8.430024607 -6.684256184 2.422943151 1.098872066 0.827764076 0.455599304 0.120383374 0.258271984 3.094408736 0.041451517 0.055393896 2.07E-07 6.684256184 -0.27110799 MFVSSSGLPPS(ph)PVPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 MFVSSSGLPPSPVPSPR 17 0 Q7Z309-5;Q7Z309;Q7Z309-2;G1UD79;Q7Z309-4;Q7Z309-3 Q7Z309-5 FAM122B;SPACIA2 Protein FAM122B 2 MFVS(0.001)SS(0.002)GLPPS(0.997)PVPS(1)PR 125.86 0.00019352 14907000 1307.9 1661.5 2037.3 1732.3 1449.2 1699.9 1908.6 2140.7 1695.4 2169.1 TRUE FALSE 1326.214635 1842.908189 1522.958418 1621.198031 1646.605575 2001.353397 2270.746886 1958.834173 1858.250745 1727.036229 0.767913616 1.067092952 0.881833509 0.938716863 0.953428508 1.15883695 1.31482296 1.134217187 1.075976701 1 10.75408263 -7.228957344 4.784056625 1.157053385 0.92622963 0.522931524 0.101935763 0.156607223 9.209441126 0.03418508 0.033162219 5.90E-08 7.228957344 -0.230823756 MFVSSSGLPPS(ph)PVPS(ph)PRR ddPTM_K562_Paclitaxel_30min_R1 1 MFVSSSGLPPSPVPSPRR 18 1 Q7Z309-5;Q7Z309;Q7Z309-2;G1UD79;Q7Z309-4;Q7Z309-3 Q7Z309-5 FAM122B;SPACIA2 Protein FAM122B 2 MFVSSSGLPPS(1)PVPS(1)PRR 72.927 0.014905 0 1317.2 1047.6 1625 1761.4 1130.2 1260.5 1567.1 1692.9 1418.9 1594.3 TRUE FALSE 1335.644864 1161.980511 1214.748652 1648.431688 1284.152374 1484.031977 1864.449044 1549.077578 1555.191685 1269.380785 1.052201892 0.915391602 0.956961588 1.298610872 1.011636847 1.169099134 1.468786251 1.220341128 1.225157733 1 10.30990919 -6.249831098 24.44384473 1.210448301 0.968905651 0.380476245 0.130496857 561.3584163 1182063.189 0.036231515 0.062040151 5.63E-07 6.249831098 -0.241542651 MFVSSSGLPPS(ph)PVPSPR ddPTM_K562_Paclitaxel_30min_R1 1 MFVSSSGLPPSPVPSPR 17 0 Q7Z309-5;Q7Z309;Q7Z309-2;G1UD79;Q7Z309-4;Q7Z309-3 Q7Z309-5 FAM122B;SPACIA2 Protein FAM122B 1 MFVSS(0.002)S(0.007)GLPPS(0.989)PVPS(0.001)PR 95.873 0.0036221 15070000 1703.7 1737.9 1806.2 1739 1734.7 1444.6 1506.8 2016.9 1945 2476.2 TRUE FALSE 1727.557056 1927.649799 1350.202471 1627.468323 1970.995509 1700.779527 1792.707434 1845.551756 2131.82594 1971.549081 0.876243495 0.97773361 0.684843448 0.825476951 0.99971922 0.86266152 0.909288768 0.93609222 1.081294887 1 10.94511391 -8.485783545 2.258615967 1.0392174 0.8736886 0.368821896 0.083964325 0.360003555 3.39380308 0.07096143 0.024206038 3.27E-09 8.485783545 -0.1655288 MGAGLGHGMDR ddPTM_K562_Paclitaxel_30min_R1 3 MGAGLGHGMDR 11 0 M0QZM1;A0A087X0X3;P52272-2;P52272;M0R2T0 M0QZM1 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 ;; 135.8 0.0016337 28517100 11127.6 10589.6 13341.2 11991 10391.9 10023.2 10458.7 11423.7 11659.9 12288.8 FALSE TRUE 11283.42073 11745.80834 9973.049058 11221.95093 11807.45272 11800.67379 12443.18373 10453.18538 12779.88549 9784.335815 1.153212742 1.200470687 1.019287282 1.146930271 1.206771 1.206078165 1.271745366 1.06835922 1.306157693 1 13.25625821 MGAPESGLAEYLFDKHTLGDS(ph)DNES ddPTM_K562_Paclitaxel_30min_R1 2 MGAPESGLAEYLFDKHTLGDSDNES 25 1 G3V1D1;G3V192;P02794 G3V1D1 FTH1 "Ferritin;Ferritin heavy chain;Ferritin heavy chain, N-terminally processed" 1 MGAPESGLAEYLFDKHT(0.004)LGDS(0.552)DNES(0.444);MGAPESGLAEYLFDKHT(0.1)LGDS(0.45)DNES(0.45) 94.49 4.91E-05 211230000 2443.5 2196.8 4117.9 2599.2 2237 1840.84 1981.12 2672.9 2889.6 3314.4 TRUE FALSE 2477.716539 2436.654053 3078.285215 2432.498946 2541.717273 2167.287127 2357.027178 2445.820461 3167.158991 2638.923461 0.938911862 0.923351544 1.1664928 0.921776998 0.963164453 0.821276994 0.893177545 0.926825085 1.200170842 1 11.36573379 -8.741044514 24.99971237 1.100085463 0.945139046 0.304036401 0.094230079 261.2509722 320239.6497 0.065765351 0.024792787 1.82E-09 8.741044514 -0.154946417 MGASMRT(ph)EEEMPNRT(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 MGASMRTEEEMPNRTK 16 2 Q5VT06;E9PIK0 Q5VT06 CEP350 Centrosome-associated protein 350 2 MGAS(0.051)MRT(0.949)EEEMPNRT(1)K 46.249 0.031014 0 412.51 204.77 468.43 236.54 204.7 174.09 239.11 284.94 293.44 252.65 TRUE FALSE 418.2864127 227.1274811 350.169053 221.3693831 232.5836056 204.9624172 284.4798743 260.7325685 321.6262231 201.1597913 2.079373865 1.129089862 1.740750727 1.100465365 1.156213198 1.018903509 1.414198496 1.296146545 1.598859399 1 7.652198152 -3.563168149 1.666208108 1.275436604 199.9983434 0.491232482 0.240223403 313.1640837 4.397098317 0.064447341 235025.0933 0.000273421 3.563168149 198.7229068 MGDT(ph)AKPY(ph)FVK ddPTM_K562_Paclitaxel_30min_R1 1 MGDTAKPYFVK 11 1 Q5VYS8-5;Q5VYS8-3;Q5VYS8-2;Q5VYS8-4;Q5VYS8-6;Q5VYS8 Q5VYS8-5 ZCCHC6 Terminal uridylyltransferase 7 2 MGDT(1)AKPY(1)FVK 68.132 0.017875 0 514.08 507.4 849.06 719.44 522.29 680.55 585.94 733.99 1166.4 725.19 TRUE FALSE 521.2787061 562.7996479 634.704302 673.2983385 593.4347404 801.2359871 697.1190562 671.6329681 1278.437932 577.3958799 0.902809882 0.974720582 1.099253258 1.166094809 1.027777927 1.387671812 1.207350243 1.163210531 2.214144534 1 9.173417003 -7.465756531 0.816563715 1.486047961 0.995925383 0.257730328 0.308611294 0.867785091 1.213867314 0.21644385 0.167913963 3.42E-08 7.465756531 -0.490122578 MGESDDSILR ddPTM_K562_Paclitaxel_30min_R1 1 MGESDDSILR 10 0 Q8WVC2;P63220 Q8WVC2 RPS21 40S ribosomal protein S21 0 126.24 0.01037 15171000 1238.7 1228.6 1542.8 1208.7 946.68 981.06 1050.2 1439.9 1187.8 1311.2 FALSE TRUE 1256.045622 1362.742703 1153.301059 1131.179392 1075.633843 1155.037216 1249.469968 1317.571507 1301.893497 1043.97672 1.203135661 1.30533821 1.104719135 1.083529326 1.030323591 1.106382158 1.196837002 1.262069816 1.24705223 1 10.02787383 -5.767640662 24.99991819 1.134710053 1.254236943 0.258681218 0.084432491 203.4647051 820260.9895 0.024121453 0.052293467 1.71E-06 5.767640662 0.11952689 MGLLS(ph)PSGIGGVSPR ddPTM_K562_Paclitaxel_30min_R1 2 MGLLSPSGIGGVSPR 15 0 M0QZ22;Q5PRF9;A0A087WZT0 M0QZ22 SAMD4B Protein Smaug homolog 2 1 MGLLS(0.831)PS(0.169)GIGGVSPR;MGLLS(0.773)PS(0.227)GIGGVSPR 190.18 4.18E-07 97029000 3625.7 3221 4371.5 3547.8 2840.6 3215.4 3023.9 3819.4 3386.1 4346.7 TRUE FALSE 3676.470986 3572.679673 3267.860759 3320.259987 3227.537812 3785.606044 3597.669239 3494.91813 3711.350034 3460.840154 1.062305921 1.032315713 0.944239148 0.959379757 0.932587946 1.093840188 1.039536378 1.009846735 1.072384123 1 11.75690659 -7.262623781 24.99993859 1.043512835 0.984912228 0.291505479 0.044373296 149.9229034 3164516.076 0.016193727 0.015041479 5.46E-08 7.262623781 -0.058600607 MGLS(ph)MER ddPTM_K562_Paclitaxel_30min_R1 1 MGLSMER 7 0 M0QZM1;A0A087X0X3;P52272-2;P52272;M0R2I7 M0QZM1 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 MGLS(1)MER 66.299 0.025301 5779800 3071.4 2781.7 3422.8 3203.4 3049.7 2644.6 2308.2 2492.9 2814.9 3029.5 TRUE FALSE 3114.409076 3085.415413 2558.671807 2997.948262 3465.120772 3113.582678 2746.1689 2281.112585 3085.283722 2412.086237 1.291168213 1.279148053 1.060771281 1.24288602 1.436565873 1.290825606 1.138503615 0.945701091 1.279093456 1 11.23606577 -7.901644788 4.745392093 1.076898663 1.263977161 0.358582346 0.117321738 0.249412496 9.507416462 0.052345041 0.034609496 1.25E-08 7.901644788 0.187078498 MGMGNNYSGGY(ph)GTPDGLGGYGR ddPTM_K562_Paclitaxel_30min_R1 1 MGMGNNYSGGYGTPDGLGGYGR 22 0 P31942-4;P31942-3;P31942;P31942-2 P31942-4 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 1 MGMGNNY(0.113)S(0.148)GGY(0.417)GT(0.319)PDGLGGY(0.002)GR 72.681 0.0055888 15596000 521.39 312.54 768.87 527.52 540.46 610.34 382.07 492.17 585.03 566.12 TRUE FALSE 528.6910686 346.6641741 574.7592592 493.6872283 614.0798021 718.5752294 454.565788 450.3570865 641.2247455 450.7444333 1.17292867 0.769092525 1.27513335 1.095270827 1.362368022 1.59419657 1.008477874 0.999140651 1.422590493 1 8.816165864 -5.785499516 24.98586551 1.226106735 0.971010397 0.181776474 0.210648264 327.2369145 339827.1694 0.055677354 0.115995337 1.64E-06 5.785499516 -0.255096338 MGMGNNYSGGYGT(ph)PDGLGGYGR ddPTM_K562_Paclitaxel_30min_R1 2 MGMGNNYSGGYGTPDGLGGYGR 22 0 P31942-4;P31942-3;P31942;P31942-2 P31942-4 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 1 MGMGNNYS(0.001)GGY(0.008)GT(0.992)PDGLGGYGR;MGMGNNYS(0.001)GGY(0.006)GT(0.973)PDGLGGY(0.019)GR 148.44 7.32E-18 27012000 852.71 974.16 891.98 687.79 740.08 961.22 704.63 895.11 884.54 1083.96 TRUE FALSE 864.6505708 1080.522083 666.7886171 643.6782278 840.8914257 1131.678871 838.3298641 819.0648184 969.5040192 863.048357 1.001856459 1.251983246 0.772597053 0.745819423 0.974327126 1.311257778 0.971359087 0.949036994 1.123348433 1 9.753297586 -7.018707964 24.86870653 1.070610433 0.941343451 0.128107869 0.160366176 1662.799072 2210375.297 0.056273352 0.057233109 9.58E-08 7.018707964 -0.129266982 MGPLGLDHMAS(ph)SIER ddPTM_K562_Paclitaxel_30min_R1 2 MGPLGLDHMASSIER 15 0 M0QZM1;A0A087X0X3;P52272-2;P52272 M0QZM1 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 MGPLGLDHMAS(0.5)S(0.5)IER;MGPLGLDHMAS(0.5)S(0.5)IER 95.554 0.0059369 13133000 7553.2 7435.3 8411.8 8772.7 7910.5 7527.6 7330.1 7552.8 7211.6 9068.5 TRUE FALSE 7658.968104 8247.111199 6288.137054 8210.058287 8988.044026 8862.514167 8720.948209 6911.142497 7904.306402 7220.334722 1.06074973 1.142206216 0.870892735 1.137074471 1.244823733 1.227438132 1.207831568 0.957177577 1.094728528 1 12.81785 -5.016330849 15.35463263 1.102786373 1.037197895 0.007680812 0.116225347 10371528.01 406295093.1 0.030796311 9007295.488 9.63E-06 5.016330849 -0.065588478 MGPLGLDHMASS(ph)IER ddPTM_K562_Paclitaxel_30min_R1 2 MGPLGLDHMASSIER 15 0 M0QZM1;A0A087X0X3;P52272-2;P52272 M0QZM1 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 MGPLGLDHMAS(0.048)S(0.952)IER;MGPLGLDHMAS(0.06)S(0.94)IER 121.92 0.00039641 45381000 3150 2773.8 3923.1 3097.7 2961.6 2570.6 2390 3349.2 2906.1 3335.1 TRUE FALSE 3194.109719 3076.652864 2932.664885 2899.027387 3365.02006 3026.459817 2843.490023 3064.664555 3185.24389 2655.404789 1.202871115 1.158637989 1.104413495 1.091745936 1.267234312 1.139735768 1.070831097 1.154123306 1.199532328 1 11.37471609 -11.17970729 3.705585919 0.999863399 1.151591116 0.409435163 0.055522357 42806431.29 56633550.27 65244.50591 0.014263913 6.61E-12 11.17970729 0.151727717 MGPLGLDHMASSIER ddPTM_K562_Paclitaxel_30min_R1 1 MGPLGLDHMASSIER 15 0 M0QZM1;A0A087X0X3;P52272-2;P52272 M0QZM1 HNRNPM Heterogeneous nuclear ribonucleoprotein M 0 106.42 0.0053437 12321000 1589.3 1314.9 1479.7 1984.5 1555.4 1606.3 1477.9 1654.9 1406.7 1840.6 FALSE TRUE 1611.555103 1458.465229 1106.131434 1857.223052 1767.271813 1891.154751 1758.32381 1514.305915 1541.81982 1465.48471 1.099673775 0.99521013 0.754788792 1.267309744 1.205929889 1.290463653 1.199824057 1.033314033 1.052088644 1 10.5171622 -6.278417393 24.99763005 1.161513402 0.954422795 0.3585876 0.12180814 866.8159716 1276256.638 0.035977282 0.053515859 5.27E-07 6.278417393 -0.207090607 MGPSGGEGMEPERRDS(ph)QDGSSYR ddPTM_K562_Paclitaxel_30min_R1 1 MGPSGGEGMEPERRDSQDGSSYR 23 2 Q14847;Q14847-2;C9J9W2;Q14847-3 Q14847 LASP1 LIM and SH3 domain protein 1 1 MGPSGGEGMEPERRDS(0.996)QDGS(0.003)S(0.001)YR 74.657 0.0068457 227360000 798.31 695.77 1337.2 1019 854.67 797.46 607.2 1066.7 698.11 1276.3 TRUE FALSE 809.488803 771.7365215 999.6073217 953.6459009 971.0905237 938.8783341 722.4130302 976.0771769 765.1665847 1016.189359 0.796592481 0.759441648 0.983682138 0.938452949 0.955619654 0.923920651 0.710903951 0.960526862 0.752976379 1 9.988953547 MGQAPSQSLLPPAQDQPRS(ph)PVPSAFSDQSR ddPTM_K562_Paclitaxel_30min_R1 5 MGQAPSQSLLPPAQDQPRSPVPSAFSDQSR 30 1 Q9UQ35;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 MGQAPSQSLLPPAQDQPRS(0.957)PVPS(0.027)AFS(0.014)DQS(0.002)R;MGQAPS(0.001)QS(0.001)LLPPAQDQPRS(0.963)PVPS(0.023)AFS(0.006)DQS(0.007)R;MGQAPSQS(0.001)LLPPAQDQPRS(0.912)PVPS(0.059)AFS(0.027)DQS(0.001)R;MGQAPSQS(0.001)LLPPAQDQPRS(0.619)PVPS(0.256)AFS(0.108)DQS(0.016)R;MGQAPS(0.001)QS(0.001)LLPPAQDQPRS(0.876)PVPS(0.097)AFS(0.022)DQS(0.003)R 83.318 1.05E-06 4967527000 3255.04 3161.99 4110.83 3602.34 2820.85 3206.05 2991.35 3303.46 2986.75 3315.46 TRUE FALSE 3300.620603 3507.226761 3073.000124 3371.302036 3205.097527 3774.597952 3558.943047 3022.810453 3273.640683 2639.767432 1.250345225 1.328612028 1.16411775 1.277120853 1.214159054 1.429897917 1.348203256 1.145104836 1.240124658 1 11.36619512 -9.28478468 1.136468818 1.002212163 1.280280315 0.515930575 0.079369507 0.82474065 1.931081964 0.078252303 0.024448321 5.19E-10 9.28478468 0.278068152 MGS(ph)GIERMGPLGLDHMASSIER ddPTM_K562_Paclitaxel_30min_R1 1 MGSGIERMGPLGLDHMASSIER 22 1 M0QZM1;A0A087X0X3;P52272-2;P52272 M0QZM1 HNRNPM Heterogeneous nuclear ribonucleoprotein M 1 MGS(1)GIERMGPLGLDHMASSIER 42.118 0.026316 69647000 62.087 0 194.08 148.73 134.14 0 195.49 115.96 0 53.427 TRUE FALSE 62.95640955 0 145.0821036 139.1911235 152.412139 0 232.583207 106.1084742 0 42.53854807 1.479984917 0 3.410603093 3.272117404 3.582918222 0 5.467586871 2.49440752 0 1 5.410698887 -5.75919404 24.99999845 2.55356892 0.739992349 0.134390158 1.653951903 101.473563 1129752.431 0.418048583 1.001537244 1.74E-06 5.75919404 -1.81357657 MGS(ph)KSPGNTSQPPAFFSK ddPTM_K562_Paclitaxel_30min_R1 2 MGSKSPGNTSQPPAFFSK 18 1 C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;Q9Y618;C9J7T7;A0A384DVL6;H7C184;Q9Y618-2 C9JE98 NCOR2 Nuclear receptor corepressor 2 1 MGS(0.55)KS(0.447)PGNT(0.001)S(0.001)QPPAFFSK;MGS(0.604)KS(0.396)PGNTSQPPAFFSK 88.555 0.0022494 26784000 4605.8 3360.3 9573.5 4802.6 3719 3346.9 2683.4 4465 5275.5 6317.7 TRUE FALSE 4670.29541 3727.188918 7156.551521 4494.582732 4225.590763 3940.425722 3192.561142 4085.67038 5782.235347 5030.149272 0.9284606 0.740969843 1.422731441 0.893528698 0.840052757 0.783361588 0.634685169 0.812236409 1.149515657 1 12.2963855 -6.504625914 24.9725205 0.846519023 1.027809618 0.106248814 0.203360137 1546.563495 2115924.188 0.058826445 0.085387174 3.13E-07 6.504625914 0.181290595 MGSDEFDIS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 MGSDEFDISPR 11 0 Q8IWI9-3;Q8IWI9 Q8IWI9-3 MGA MAX gene-associated protein 1 MGSDEFDIS(1)PR;MGSDEFDIS(1)PR;MGSDEFDIS(1)PR 166.11 0.0004814 44272000 36018.5 33024.5 40407.6 36937.4 32457.7 32343.9 31007.5 36608.3 34985.2 40618.5 TRUE FALSE 36522.87013 36630.22659 30206.20163 34568.40049 36878.98825 38079.63653 36891.01125 33498.19641 38345.68478 32340.4274 1.129325524 1.132645099 0.934007496 1.068891269 1.140337071 1.177462377 1.140708835 1.035799434 1.185688869 1 14.98105112 MGSFSSHMT(ph)EFPRK ddPTM_K562_Paclitaxel_30min_R1 1 MGSFSSHMTEFPRK 14 1 Q8WYA1-6;Q8WYA1-8;Q8WYA1-7 Q8WYA1-6 ARNTL2 Aryl hydrocarbon receptor nuclear translocator-like protein 2 1 MGSFS(0.006)S(0.115)HMT(0.879)EFPRK 55.314 0.029137 0 557.67 637.96 815.64 680.58 661.84 813.12 424.4 507.87 732.33 471.64 TRUE FALSE 565.4791006 707.6146302 609.7215943 636.930645 751.993813 957.3154152 504.9276845 464.7232735 802.6735686 375.5195091 1.505858116 1.884361832 1.623674881 1.696131971 2.002542597 2.549309402 1.344611058 1.237547617 2.137501645 1 8.552744051 -11.2901325 10.03785273 0.999999942 1.773023433 0.283229311 0.370189906 4.95E-07 3.46E-08 0.370154673 0.089775688 5.13E-12 11.2901325 0.773023491 MGT(ph)VRS(ph)PMPSMT(ph)PRFPVKPR ddPTM_K562_Paclitaxel_30min_R1 1 MGTVRSPMPSMTPRFPVKPR 20 3 A0A1B0GUM3 A0A1B0GUM3 3 MGT(1)VRS(1)PMPS(0.133)MT(0.867)PRFPVKPR 46.159 0.02996 98855000 653.83 457.09 570.52 661.86 683.58 611.29 510.74 946.62 470.53 668.97 TRUE FALSE 662.9856372 506.996632 426.4851699 619.411262 776.6951691 719.6936986 607.6502488 866.1987224 515.7265089 532.6335468 1.244731281 0.95186763 0.800710305 1.162921986 1.458216768 1.351198592 1.140841114 1.626256415 0.968257655 1 9.056999486 -6.51764076 24.61825556 1.28971577 0.992285607 0.217734099 0.213759226 231.8765733 1089810.463 0.059542051 0.079266146 3.04E-07 6.51764076 -0.297430163 MGTPVPRPPQDMGQIGVRT(ph)PLGPR ddPTM_K562_Paclitaxel_30min_R1 1 MGTPVPRPPQDMGQIGVRTPLGPR 24 2 E9PPJ0;Q13435;E9PJ04;H0YCG1;E9PJT3 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 MGTPVPRPPQDMGQIGVRT(1)PLGPR 71.001 0.0086918 14179000 436.02 466.18 489.08 437.23 350.74 532.53 407.56 531.04 480.67 501.36 TRUE FALSE 442.1256252 517.0791089 365.6057051 409.1880248 398.5167261 626.9667184 484.8923824 485.9248374 526.8405012 399.1825568 1.107577517 1.29534495 0.915885975 1.025064893 0.998332014 1.570626541 1.214713354 1.217299777 1.319798404 1 8.64090487 MHT(ph)LT(ph)GFSLVSLLSFGYLSWDWAK ddPTM_K562_Paclitaxel_30min_R1 1 MHTLTGFSLVSLLSFGYLSWDWAK 24 0 Q5FYB1 Q5FYB1 ARSI Arylsulfatase I 2 MHT(0.667)LT(0.667)GFS(0.667)LVSLLSFGYLSWDWAK 53.909 0.012669 5463800 0 189.2 192.11 269.53 167.79 173.37 208.96 175.79 165.14 288.13 TRUE FALSE 0 209.8574958 143.6094545 252.2435522 190.6458387 204.1147353 248.6090692 160.8555423 181.0024349 229.4089478 0 0.914774676 0.625997616 1.099536677 0.831030526 0.889741822 1.083693864 0.701173794 0.78899466 1 7.841777853 -5.259906427 25 0.876125175 1.94E-05 0.76668084 0.145883064 61.56849889 1003989.927 0.035324566 0.216930885 5.50E-06 5.259906427 -0.876105823 MIENSSWS(ph)MT(ph)FEERENR ddPTM_K562_Paclitaxel_30min_R1 2 MIENSSWSMTFEERENR 17 1 B7ZAP0 B7ZAP0 RABGAP1L "Rab GTPase-activating protein 1-like, isoform 10" 2 MIENS(0.053)S(0.057)WS(0.949)MT(0.941)FEERENR;MIENS(0.003)S(0.011)WS(0.994)MT(0.992)FEERENR 75.911 0.023144 30979000 2739.36 2347.09 3001.7 3041.5 2407.22 2090.65 2594.18 3089.1 2097.06 3109.54 TRUE FALSE 2777.719492 2603.353224 2243.88371 2846.431803 2735.124119 2461.397423 3086.412112 2826.661673 2298.491983 2475.814041 1.121941893 1.05151404 0.906321587 1.149695315 1.1047373 0.994177019 1.246625175 1.14171001 0.928378281 1 11.27368724 -5.250999 22.05216867 1.066023209 1.121942036 0.029808461 0.100512465 1418.534895 2995896.634 0.025299793 0.311006139 5.61E-06 5.250999 0.055918827 MIIEDVLSPDT(ph)CVCR ddPTM_K562_Paclitaxel_30min_R1 1 MIIEDVLSPDTCVCR 15 0 Q92917 Q92917 GPKOW G patch domain and KOW motifs-containing protein 1 MIIEDVLS(0.101)PDT(0.899)CVCR 151.3 7.80E-05 6304600 866.34 734.08 750.56 878.48 716.19 768.19 834.17 991.22 770.84 812.89 TRUE FALSE 878.4714329 814.2293369 561.0718452 822.1382247 813.7472032 904.4177106 992.4494028 907.009674 844.8826262 647.2225718 1.357294185 1.258036064 0.866891653 1.270255798 1.257291137 1.397382832 1.533397391 1.401387581 1.305397344 1 9.338118112 -6.850853203 2.470287504 1.361791472 1.164801104 0.10565151 0.176206066 0.482351844 6.004837352 0.059581861 0.07136948 1.41E-07 6.850853203 -0.196990368 MISTPS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 MISTPSPK 8 0 Q53F19;Q53F19-2 Q53F19 C17orf85 Uncharacterized protein C17orf85 1 MIST(0.001)PS(0.998)PK;MISTPS(1)PK 134.23 0.00010791 52416000 9858.8 8239.2 15263.5 11185.5 8547.8 8321.3 7452.1 9893.6 9665.3 12516.3 TRUE FALSE 9996.853617 9138.783719 11410.04065 10468.11209 9712.155075 9796.965718 8866.097072 9053.076926 10593.69525 9965.47119 1.003149116 0.917044819 1.144957467 1.050438248 0.974580618 0.983091068 0.889681672 0.908444443 1.063040076 1 13.28272231 -6.888412318 5.009298248 0.960263862 1.028905708 0.14413331 0.068906304 0.395742507 15.80050303 0.022579196 0.025817089 1.29E-07 6.888412318 0.068641846 MITNSLNHDS(ph)PPSTPPR ddPTM_K562_Paclitaxel_30min_R1 2 MITNSLNHDSPPSTPPR 17 0 J3QKZ5;J3QS16;Q8N9M1-2;Q8N9M1;Q8N9M1-3 J3QKZ5 C19orf47 Uncharacterized protein C19orf47 1 MITNSLNHDS(0.989)PPS(0.005)T(0.005)PPR;MITNSLNHDS(0.958)PPS(0.039)T(0.003)PPR 216.71 2.24E-23 13022000 1747.37 1446.94 2179.46 1947.31 1645.63 1461.08 1541.36 1732.17 1376.51 1726.91 TRUE FALSE 1771.838571 1604.921802 1629.228368 1822.418252 1869.792667 1720.182023 1833.825014 1585.011347 1508.729936 1374.964794 1.288642865 1.167245743 1.184923698 1.325429029 1.359884031 1.251073504 1.333725068 1.152765041 1.09728623 1 10.42517896 -8.712141296 1.899080875 1.01271013 1.269724929 0.689127228 0.061365486 0.202825405 1.377675569 0.06183756 0.018399674 1.94E-09 8.712141296 0.257014799 MKDCEYQQISPGAAPLPAS(ph)PGAR ddPTM_K562_Paclitaxel_30min_R1 2 MKDCEYQQISPGAAPLPASPGAR 23 1 Q9NUE0 Q9NUE0 ZDHHC18 Palmitoyltransferase ZDHHC18 1 MKDCEYQQISPGAAPLPAS(1)PGAR;MKDCEYQQISPGAAPLPAS(1)PGAR 144.74 1.32E-17 72666000 7346.9 7260.2 12539.4 8648.7 6725.7 6308.4 6132.2 8494.3 8830.7 9567.6 TRUE FALSE 7449.779267 8052.893188 9373.673385 8094.011092 7641.854207 7427.106166 7295.752938 7772.656195 9678.928192 7617.717868 0.977954211 1.057126731 1.230509392 1.062524398 1.003168447 0.974977847 0.957734726 1.020339205 1.270581079 1 12.89514314 -4.227174693 14.67613766 1.054753579 1.058142051 0 0.10298346 0 0 0.024311798 0 5.93E-05 4.227174693 0.003388472 MKDTDSEEEIREAFR ddPTM_K562_Paclitaxel_30min_R1 1 MKDTDSEEEIREAFR 15 2 G3V361;A0A590UJI2;Q96HY3;P0DP25;P0DP24;P0DP23;E7EMB3;A0A590UJC0;G3V226 G3V361 CALM1;CALM2 0 77.192 0.019099 25727000 2764.6 2433.4 5202.9 3374.7 2492.2 2361.2 2690.7 3207 3195.8 4180.1 FALSE TRUE 2803.31293 2699.086841 3889.363546 3158.261847 2831.679833 2779.925667 3201.246279 2934.545333 3502.770869 3328.193325 0.842292696 0.81097658 1.168611065 0.948941825 0.85081591 0.835265682 0.961857069 0.881723219 1.052454148 1 11.70052352 -8.76395762 24.99995281 1.02622711 0.915930673 0.175371352 0.098375261 128.9674553 1280200.381 0.0852852 0.025955411 1.72E-09 8.76395762 -0.110296437 MKETIQGTGSWGPEPPGPGIPPAYSS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 MKETIQGTGSWGPEPPGPGIPPAYSSPR 28 1 Q9H4L4 Q9H4L4 SENP3 Sentrin-specific protease 3 1 MKETIQGTGSWGPEPPGPGIPPAY(0.001)S(0.08)S(0.919)PR 136.88 4.40E-19 10313000 285.64 389.7 641.49 379.34 460.27 326.78 239.99 342.21 407.6 429.87 TRUE FALSE 289.6398413 432.2487639 479.5379157 355.0108303 522.9665664 384.7298448 285.5268497 313.1371245 446.7518012 342.262258 0.846251184 1.262916824 1.401083247 1.037247964 1.527970304 1.124079082 0.834234108 0.914904045 1.305290872 1 8.418958402 -7.525428133 24.97589622 1.002607419 1.228985301 0.170759747 0.20762351 129.8153693 1271745.184 0.077877458 0.060694876 2.98E-08 7.525428133 0.226377881 MKRLS(ph)S(ph)LSSEK ddPTM_K562_Paclitaxel_30min_R1 1 MKRLSSLSSEK 11 2 D6R9B9 D6R9B9 FRYL 2 MKRLS(0.998)S(0.982)LS(0.01)S(0.01)EK 78.098 0.029633 22963000 1381.6 867.62 1334.9 1303.1 1142.6 925.15 1391.5 1277.2 1343.7 1704.2 TRUE FALSE 1400.946663 962.3496857 997.8879852 1219.524998 1298.241464 1089.212363 1655.529861 1168.693888 1472.768389 1356.883105 1.0324741 0.709235514 0.735426642 0.898769389 0.956782099 0.802731171 1.220097631 0.861307716 1.085405503 1 10.40608072 -7.229518436 1.217834584 1.020211273 0.826112032 0.251942711 0.131996877 0.618243443 1.884284851 0.063692899 0.059035817 5.89E-08 7.229518436 -0.194099241 MKS(ph)SSSVTTSETQPCTPSSSDYSDLQR ddPTM_K562_Paclitaxel_30min_R1 1 MKSSSSVTTSETQPCTPSSSDYSDLQR 27 1 K7EM16;P50552 K7EM16 VASP Vasodilator-stimulated phosphoprotein 1 MKS(0.326)S(0.326)S(0.124)S(0.124)VT(0.062)T(0.024)S(0.01)ET(0.004)QPCTPSSSDYSDLQR 68.353 0.00060746 82430000 1640.2 1301.2 2298.4 1590.5 1173 1243.3 1227.8 1542.9 1352.3 2224 TRUE FALSE 1663.16786 1443.269416 1718.140494 1488.492449 1332.782459 1463.781798 1460.76864 1411.821015 1482.194457 1770.747579 0.939246158 0.815062199 0.970291031 0.840601149 0.752666543 0.826646223 0.824944593 0.797302242 0.837044463 1 10.79014285 -6.498892011 24.62519075 0.825362407 0.899979394 0.142158244 0.070996605 1004.319143 1031051.117 0.01866408 0.02749973 3.17E-07 6.498892011 0.074616987 MKSS(ph)SSVTTSETQPCTPSSSDYSDLQR ddPTM_K562_Paclitaxel_30min_R1 1 MKSSSSVTTSETQPCTPSSSDYSDLQR 27 1 K7EM16;P50552 K7EM16 VASP Vasodilator-stimulated phosphoprotein 1 MKS(0.141)S(0.597)S(0.21)S(0.027)VT(0.002)T(0.004)S(0.003)ET(0.016)QPCTPSSSDYSDLQR 113.87 4.88E-11 90330000 1030.7 1115.4 1798.5 1447.4 929.69 1122.5 993.55 1834.6 906.78 1845.6 TRUE FALSE 1045.13298 1237.183144 1344.446431 1354.570242 1056.329518 1321.559614 1182.070926 1678.739279 993.8802706 1469.465707 0.711233325 0.841927197 0.914921951 0.921811401 0.718852786 0.899347027 0.804422261 1.142414737 0.676354859 1 10.52107598 -2.000075474 0.03195205 1.452004617 1.03E-06 0.126417407 0.127757846 2558.366031 6.274588641 88.29187741 226.5250414 0.009998262 2.000075474 -1.452003588 MLAES(ph)DES(ph)GDEESVSQTDKTELQNTLR ddPTM_K562_Paclitaxel_30min_R1 1 MLAESDESGDEESVSQTDKTELQNTLR 27 1 P22059 P22059 OSBP Oxysterol-binding protein 1 2 MLAES(0.984)DES(0.937)GDEES(0.077)VS(0.001)QTDKTELQNTLR 74.859 0.00016573 42260000 1894.7 1443 2616.9 1873.9 1467.8 1289.2 1393.7 1721.2 2064 2192.9 TRUE FALSE 1921.231646 1600.55162 1956.23123 1753.716441 1667.73921 1517.821519 1658.147299 1574.973317 2262.256422 1745.985776 1.100370731 0.916703699 1.120416475 1.004427679 0.955184878 0.869320666 0.949691184 0.902053922 1.295690064 1 10.76982609 -8.74541375 24.99952238 1.147845179 0.975675076 0.312552016 0.101166278 239.7031097 373933.4596 0.066899562 0.025109952 1.80E-09 8.74541375 -0.172170103 MLEDRDLFVMR ddPTM_K562_Paclitaxel_30min_R1 2 MLEDRDLFVMR 11 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ; 133.81 0.0063856 29359000 3028.2 3422.5 3497.7 3514 2992.9 2450.5 3599.2 4191.9 3960.4 5252.2 FALSE TRUE 3070.604143 3796.180124 2614.662376 3288.627768 3400.58365 2885.061768 4282.129411 3835.77193 4340.814116 4181.798757 0.734278314 0.90778642 0.625248255 0.786414641 0.813186824 0.68990928 1.023992224 0.91725407 1.038025588 1 12.02990792 -7.767354861 24.99995625 0.987922515 0.763777601 0.695160743 0.07626313 84.13681967 355573.7816 0.030291689 0.0210305 1.71E-08 7.767354861 -0.224144914 MLGEDS(ph)DEEEEMDTSER ddPTM_K562_Paclitaxel_30min_R1 7 MLGEDSDEEEEMDTSER 17 0 A0A087WWF4;A0A087X0M4;Q9BWU0;H7C256 A0A087WWF4 SLC4A1AP Kanadaptin 1 MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(1)DEEEEMDTSER;MLGEDS(0.997)DEEEEMDT(0.003)SER;MLGEDS(0.854)DEEEEMDT(0.144)S(0.001)ER 241.66 2.96E-51 496881100 9697.99 9817.84 12138.16 10646.9 8989.07 8928.39 8169.72 10042.1 9492.58 11636.64 TRUE FALSE 9833.791781 10889.78497 9073.731385 9964.055488 10213.53352 10511.71461 9719.881721 9188.960924 10404.38472 9265.086381 1.061381554 1.175357091 0.979346658 1.075441186 1.102367868 1.134551171 1.049087005 0.991783622 1.122966834 1 13.17758871 -15 0.16270423 0.708310245 1.096179716 0.133287152 0.058058198 271.7355628 2.514700391 25.46586745 0.236967781 1.00E-15 15 0.387869471 MLISAVS(ph)PEIR ddPTM_K562_Paclitaxel_30min_R1 4 MLISAVSPEIR 11 0 A0AVK6;E9PMT9 A0AVK6 E2F8 Transcription factor E2F8 1 MLISAVS(1)PEIR;MLISAVS(1)PEIR;MLIS(0.032)AVS(0.968)PEIR;MLIS(0.077)AVS(0.923)PEIR 166.24 7.67E-21 81925000 6774.7 6313.7 7629.9 7018.9 6659.5 6362.4 6178.05 7707.7 6540.5 7348 TRUE FALSE 6869.566702 7003.051118 5703.63738 6568.739169 7566.636646 7490.682307 7350.302736 7052.882775 7168.744249 5850.473567 1.174189854 1.197005856 0.974901829 1.122770506 1.293337464 1.280354867 1.256360302 1.205523398 1.225327175 1 12.51433769 -4.83558568 13.41377691 1.181505586 0.00065487 0 0.104736538 5210262.427 1975072.774 0.027549498 187976258.3 1.46E-05 4.83558568 -1.180850716 MLLAAGSAASGNNHRDDDTAS(ph)VT(ph)SLNSSATGR ddPTM_K562_Paclitaxel_30min_R1 1 MLLAAGSAASGNNHRDDDTASVTSLNSSATGR 32 1 P21675-10;P21675-11;P21675-8;P21675-6;P21675-7;P21675-3;P21675-5;P21675-9;P21675;P21675-2;P21675-12;P21675-4 P21675-10 TAF1 Transcription initiation factor TFIID subunit 1 2 MLLAAGS(0.003)AAS(0.004)GNNHRDDDT(0.282)AS(0.614)VT(0.535)S(0.535)LNS(0.01)S(0.007)AT(0.009)GR 58.342 0.0033593 12136000 1951.4 1672.1 1851.3 1538.8 1332.2 1378 1816.4 1943.1 2336.5 2649.1 TRUE FALSE 1978.725621 1854.665533 1383.916418 1440.108255 1513.668194 1622.368952 2161.052418 1778.021527 2560.931265 2109.211966 0.938135025 0.879316808 0.656129607 0.682770759 0.717646315 0.769182509 1.024578114 0.842979063 1.214164961 1 11.04248837 -7.758557002 24.84541046 1.007345485 0.766609356 0.519733436 0.115717005 60.59538899 522324.468 0.047001711 0.034770021 1.74E-08 7.758557002 -0.240736128 MLLSPGGVSQPLT(ph)AS(ph)LARQR ddPTM_K562_Paclitaxel_30min_R1 1 MLLSPGGVSQPLTASLARQR 20 1 I3L0U5;Q6PK04 I3L0U5 CCDC137 Coiled-coil domain-containing protein 137 2 MLLSPGGVSQPLT(1)AS(1)LARQR 63.374 0.01503 26535000 3052.8 3221.7 2983.2 3282.1 3206.1 2942.5 3359.6 3383.7 2727.8 3586.6 TRUE FALSE 3095.548619 3573.456101 2230.054264 3071.600796 3642.8251 3464.31106 3997.066562 3096.233565 2989.817378 2855.648951 1.084008809 1.251363932 0.780927314 1.075622686 1.275655783 1.213143184 1.399705156 1.084248666 1.046983516 1 11.47960292 -4.944542435 15.66883442 1.133753781 0.716607909 0.003325573 0.163320786 14191339.35 98524065.75 0.042767847 183518091.3 1.14E-05 4.944542435 -0.417145872 MLMS(ph)FVSR ddPTM_K562_Paclitaxel_30min_R1 1 MLMSFVSR 8 0 Q8NGG6 Q8NGG6 OR8B12 Olfactory receptor 8B12 1 MLMS(1)FVSR 58.604 0.028422 0 206.78 304.36 277.98 217.29 326.13 182.6 201.41 357.82 175.45 388.99 TRUE FALSE 209.675558 337.5910541 207.800511 203.353992 370.5544274 214.9815462 239.6264961 327.4209576 192.3027564 309.7136245 0.676998173 1.090010343 0.670944042 0.656587169 1.196442126 0.69413009 0.773703438 1.057173245 0.620905059 1 8.274791039 -12.2265929 2.163266442 1.504718092 0.836755052 0.061622617 0.199620105 26614249.18 4774491.565 65655222.39 0.047772483 5.93E-13 12.2265929 -0.66796304 MLNS(ph)SFEDDPFFSESILAHR ddPTM_K562_Paclitaxel_30min_R1 1 MLNSSFEDDPFFSESILAHR 20 0 A0A494C175;A0A0S2Z4A4;P58340 A0A494C175 MLF1 Myeloid leukemia factor 1 1 MLNS(0.5)S(0.5)FEDDPFFSESILAHR 134.42 6.51E-10 8787100 934.65 975.91 1045.7 998.49 911.05 758.02 1064.1 1155.5 825.19 1268.3 TRUE FALSE 947.7379836 1082.463154 781.7001019 934.4513205 1035.150434 892.4442039 1266.00742 1057.333063 904.4531865 1009.819764 0.93852192 1.071936986 0.774098636 0.92536446 1.025084348 0.883765832 1.253696417 1.047051266 0.895658036 1 9.979882103 MLNSS(ph)FEDDPFFSESILAHR ddPTM_K562_Paclitaxel_30min_R1 1 MLNSSFEDDPFFSESILAHR 20 0 A0A494C175;A0A0S2Z4A4;P58340 A0A494C175 MLF1 Myeloid leukemia factor 1 1 MLNS(0.247)S(0.753)FEDDPFFSESILAHR 156.7 2.41E-12 9310100 683.07 719.53 767.8 575.88 601.69 566.03 772.64 896.63 446.56 986.46 TRUE FALSE 692.6350875 798.0907187 573.959394 538.9456343 683.6503647 666.407473 919.2444065 820.4556849 489.4540833 785.4189105 0.881867088 1.016133821 0.730768493 0.686188768 0.870427686 0.848473934 1.170387413 1.044609028 0.623175832 1 9.617318524 -7.561591686 24.99984931 0.969856301 0.835407139 0.127646697 0.153674707 333.6684605 215472.1051 0.060695994 0.047014995 2.74E-08 7.561591686 -0.134449162 MLPHAPGVQMQAIPEDAIPEES(ph)GDEDEDDPDKR ddPTM_K562_Paclitaxel_30min_R1 9 MLPHAPGVQMQAIPEDAIPEESGDEDEDDPDKR 33 1 Q13547 Q13547 HDAC1 Histone deacetylase 1 1 MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR;MLPHAPGVQMQAIPEDAIPEES(1)GDEDEDDPDKR 119.37 6.27E-18 933513000 18370.24 15012.47 27746.6 17964.7 14157.09 13632.77 12676.85 18009.81 15823.85 24296.9 TRUE FALSE 18627.48004 16651.58224 20741.62766 16812.52455 16085.52534 16050.35035 15082.21611 16479.76423 17343.8015 19345.17844 0.962900399 0.860761367 1.072185905 0.869080872 0.831500489 0.829682207 0.77963696 0.85187967 0.896543888 1 14.23968642 -6.494692011 24.74285357 0.851341344 0.957464285 0.271659961 0.072587401 743.3244715 652504.1957 0.019662875 0.029089935 3.20E-07 6.494692011 0.106122941 MLPHAPGVQMQAIPEDAVHEDS(ph)GDEDGEDPDKR ddPTM_K562_Paclitaxel_30min_R1 13 MLPHAPGVQMQAIPEDAVHEDSGDEDGEDPDKR 33 1 Q92769-3;Q92769 Q92769-3 HDAC2 Histone deacetylase 2 1 MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR;MLPHAPGVQMQAIPEDAVHEDS(1)GDEDGEDPDKR 78.653 4.92E-06 2417113000 24237.62 19845.38 38549.4 25889.87 19426.67 19462.03 16511.58 25558.1 24101.79 31049.35 TRUE FALSE 24577.02146 22012.1657 28817.1272 24229.40962 22072.91135 22913.34776 19644.56611 23386.77988 26416.87462 24721.47543 0.994156742 0.890406633 1.165671818 0.980095613 0.892863835 0.926860042 0.794635667 0.946010684 1.068580016 1 14.59347723 -6.53022725 22.11039744 0.928514306 1.01557325 0.126582301 0.091042211 81.27200012 244528.0692 0.027524527 0.035657529 2.95E-07 6.53022725 0.087058944 MLPTPIGTNSGTSLLGPS(ph)LLDGNSRDSFVSR ddPTM_K562_Paclitaxel_30min_R1 1 MLPTPIGTNSGTSLLGPSLLDGNSRDSFVSR 31 1 Q96RY5 Q96RY5 CRAMP1L Protein cramped-like 1 MLPT(0.002)PIGT(0.058)NS(0.23)GT(0.184)S(0.184)LLGPS(0.303)LLDGNS(0.036)RDS(0.002)FVSR 52.192 0.0039795 11583000 688.52 606.07 578.71 633.11 439.95 552.7 753.19 713.6 859.44 1228.2 TRUE FALSE 698.1614043 672.2427722 432.6075031 592.5051583 499.8786384 650.7135847 896.1038706 652.9752258 941.9930521 977.8921658 0.713945186 0.687440595 0.442387738 0.605900302 0.511179715 0.665424683 0.916362664 0.667737455 0.963289292 1 9.933531575 -7.626136245 4.59855954 0.858100711 0.589619617 0.606152452 0.111661835 0.160622023 5.829497141 0.043689294 0.033305237 2.37E-08 7.626136245 -0.268481095 MLQHIDYR ddPTM_K562_Paclitaxel_30min_R1 2 MLQHIDYR 8 0 J3KRY3;S4R3P3;J3QLE5;P14678-2;P63162;P14678;P63162-2;P14678-3 J3KRY3 SNRPN;SNRPB Small nuclear ribonucleoprotein-associated proteins B and B;Small nuclear ribonucleoprotein-associated protein N 0 ; 132.76 0.00028057 24348000 7247 7332.9 7176.1 6908.8 5504.9 6242.1 9302.5 10505.9 8866 12719.4 FALSE TRUE 7348.480359 8133.53082 5364.404802 6465.700491 6254.760579 7349.048792 11067.60081 9613.358219 9717.618914 10127.1793 0.725619656 0.803138819 0.529703745 0.638450283 0.617621195 0.725675785 1.09286115 0.94926316 0.959558296 1 13.30594478 -7.655700829 5.450401198 0.994864758 0.663280204 0.817183113 0.076104894 0.090835003 4.039922791 0.031240853 0.023876824 2.21E-08 7.655700829 -0.331584554 MLS(ph)FQGLAELAHR ddPTM_K562_Paclitaxel_30min_R1 2 MLSFQGLAELAHR 13 0 C9JZL3;O15294 C9JZL3 OGT UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110 kDa subunit 1 MLS(1)FQGLAELAHR;MLS(1)FQGLAELAHR 123.59 0.00085163 5449700 1432.8 1478.76 1949.83 1615.67 1408.34 1414.75 1328.79 1965.6 1876.85 1971.77 TRUE FALSE 1452.863621 1640.216018 1457.571301 1512.048158 1600.179751 1665.636048 1580.920966 1798.610011 2057.129828 1569.922192 0.925436705 1.044775357 0.928435377 0.963135731 1.019273286 1.060967261 1.007005936 1.145668251 1.310338716 1 10.61647734 -8.279760495 3.847751198 1.176504906 0.993403829 0.439364961 0.081784695 0.187424237 6.289853482 0.044806071 0.021358012 5.25E-09 8.279760495 -0.183101077 MLS(ph)QDAPTVK ddPTM_K562_Paclitaxel_30min_R1 2 MLSQDAPTVK 10 0 A0A0C4DG07;O60934 A0A0C4DG07 NBN Nibrin 1 MLS(1)QDAPTVK;MLS(1)QDAPTVK 101.39 0.009072 24986000 2526.1 1860.25 3247.7 2556.4 1725.12 1836.69 1747.74 2156.24 2182.7 3290.6 TRUE FALSE 2561.473194 2063.358386 2427.777968 2392.443946 1960.110551 2162.401183 2079.364541 1973.053953 2392.358088 2619.973914 0.977671259 0.78754921 0.926642038 0.913155636 0.748141247 0.825352181 0.79365849 0.753081526 0.913122865 1 11.35533673 -5.246007302 23.89460554 0.841941899 0.977671444 0.174313548 0.080345757 2514.75006 3893653.875 0.019501862 0.427372598 5.68E-06 5.246007302 0.135729545 MLS(ph)SSDAITQEFMDLR ddPTM_K562_Paclitaxel_30min_R1 1 MLSSSDAITQEFMDLR 16 0 H3BPE1;H3BQK9;Q9UPN3;H0Y390;A0A590UJG2;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;A0A669KBB0;E9PLY5;E9PNZ4;A0A5F9ZGX0 H3BPE1 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 MLS(0.829)S(0.065)S(0.106)DAITQEFMDLR 76.574 0.028849 60438000 754.12 507.94 653.05 727.44 521.4 380.31 549.43 575.74 650.92 485.91 TRUE FALSE 764.6800067 563.3986069 488.1794507 680.7852543 592.4235074 447.7526387 653.6814743 526.8272933 713.4437744 386.8812753 1.976523692 1.456257108 1.261832717 1.759674861 1.531279866 1.157338613 1.689617761 1.36172859 1.844089699 1 8.595747095 -12.10148327 2.568125566 0.017224011 1.53919877 0.310917871 0.248321155 118533794.3 99076630.96 666062741.8 0.060496182 7.92E-13 12.10148327 1.521974759 MLS(ph)SYTDNGIVVATAEDFMQNFK ddPTM_K562_Paclitaxel_30min_R1 2 MLSSYTDNGIVVATAEDFMQNFK 23 0 Q9UK61-2;Q9UK61-3;Q9UK61;A0A087X0F1;Q9UK61-4 Q9UK61-2 FAM208A Protein FAM208A 1 MLS(0.665)S(0.243)Y(0.001)T(0.091)DNGIVVATAEDFMQNFK;MLS(0.689)S(0.227)Y(0.001)T(0.083)DNGIVVATAEDFMQNFK 57.477 0.013813 91548000 0 143 184.45 320.53 192.21 258.18 0 107.35 0 0 TRUE FALSE 0 158.6132236 137.8833163 299.9726404 218.3922561 303.964598 0 98.22994744 0 0 0 MLSMGYATKY(ph)TSRS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 MLSMGYATKYTSRSR 15 2 G3V1S7;M0R2V0;Q92839 G3V1S7 HAS1 Hyaluronan synthase 1 2 MLS(0.007)MGY(0.005)AT(0.08)KY(0.668)T(0.19)S(0.093)RS(0.957)R 42.388 0.030924 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 MLSSTPPT(ph)PIACAPSAVNQAAPHQQNR ddPTM_K562_Paclitaxel_30min_R1 1 MLSSTPPTPIACAPSAVNQAAPHQQNR 27 0 O75376-2;O75376;A0A088AWL3;E7EVK1 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 MLS(0.027)S(0.099)T(0.377)PPT(0.497)PIACAPSAVNQAAPHQQNR 125.08 2.15E-14 16845000 2210.8 2362.3 2772.8 2813.2 2317.7 2373.4 1865.9 2382.1 2755.9 2969.8 TRUE FALSE 2241.758021 2620.223903 2072.772346 2632.773943 2633.409979 2794.289166 2219.944784 2179.725736 3020.616509 2364.55313 0.948068365 1.108126466 0.876602145 1.11343404 1.113703027 1.181740909 0.938843267 0.921834113 1.27745766 1 11.20735184 -6.311908743 24.99967564 1.074881684 0.99065099 0.135592553 0.11472032 840.0334115 416103.228 0.032387036 0.048037847 4.88E-07 6.311908743 -0.084230693 MLT(ph)S(ph)T(ph)PAPPR ddPTM_K562_Paclitaxel_30min_R1 1 MLTSTPAPPR 10 0 P60608 P60608 ERVFC1-1 Endogenous retrovirus group FC1 member 1 Env polyprotein;Surface protein;Truncated transmembrane protein 3 MLT(1)S(1)T(1)PAPPR 83.883 0.017816 3640800 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 MLWGSDPYPHAEPQQATT(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 MLWGSDPYPHAEPQQATTPK 20 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 MLWGSDPYPHAEPQQAT(0.251)T(0.749)PK;MLWGSDPY(0.002)PHAEPQQAT(0.196)T(0.801)PK 68.634 0.015247 23447000 2368.06 1793.41 2951.9 2661.2 1799.69 1703.89 1671.54 2276.44 1628.65 2871.7 TRUE FALSE 2401.220146 1989.220569 2206.656336 2490.522543 2044.838247 2006.050968 1988.705989 2083.042213 1785.08911 2286.445964 1.050197636 0.870005502 0.965103209 1.089254932 0.89433045 0.877366445 0.869780446 0.911039336 0.780726568 1 11.15889111 -6.966061849 24.99094433 0.881625232 0.983898702 0.323233954 0.073509977 224.1177238 165032.1054 0.022250049 0.025229088 1.08E-07 6.966061849 0.102273471 MMVVLLMLSS(ph)LS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 MMVVLLMLSSLSR 13 0 Q8IXR5-4 Q8IXR5-4 2 MMVVLLMLS(0.033)S(0.967)LS(1)R 50.088 0.030624 7175800 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 MMYMPGS(ph)SDPR ddPTM_K562_Paclitaxel_30min_R1 2 MMYMPGSSDPR 11 0 F8WBZ3 F8WBZ3 NINJ2 1 MMYMPGS(0.5)S(0.5)DPR;MMYMPGS(0.5)S(0.5)DPR 108.31 0.0043193 33940000 2328.5 2070.17 3706.3 3113.8 2379.2 2230.99 1498.76 1911.06 2151.19 1681.21 TRUE FALSE 2361.106184 2296.198161 2770.598726 2914.094805 2703.28732 2626.624752 1783.141886 1748.703525 2357.821411 1338.578479 1.76389074 1.715400477 2.069806716 2.177007064 2.019520979 1.962249351 1.332116057 1.306388495 1.761436814 1 10.38648601 -7.759025979 24.99912942 1.375517645 1.959334669 0.654006617 0.213899076 41.86727171 433687.2206 0.086333405 0.063660035 1.74E-08 7.759025979 0.583817024 MNEEISSDS(ph)ESESLAPR ddPTM_K562_Paclitaxel_30min_R1 1 MNEEISSDSESESLAPR 17 0 O43818 O43818 RRP9 U3 small nucleolar RNA-interacting protein 2 1 MNEEIS(0.013)S(0.074)DS(0.913)ES(0.001)ESLAPR 220.64 9.40E-164 0 769.6 865.08 1246.2 1127.3 869.61 886.45 765.18 1111.7 531.99 858.99 TRUE FALSE 780.3767744 959.5323599 931.5813972 1055.000024 988.0656046 1043.649461 910.3689105 1017.254146 583.0900165 683.9273665 1.141022881 1.402974068 1.362105748 1.542561499 1.444693769 1.525965347 1.331090047 1.487371607 0.852561317 1 9.417699308 -8.761646932 25 0.926280473 1.410758203 0.737782276 0.114046957 2.611611038 314215.2864 0.089396643 0.028629173 1.73E-09 8.761646932 0.48447773 MNILGS(ph)QS(ph)PLHPSTLSTVIHR ddPTM_K562_Paclitaxel_30min_R1 1 MNILGSQSPLHPSTLSTVIHR 21 0 A0A2R8YCL1;Q13322-3;Q13322-2;Q13322-4;Q13322 A0A2R8YCL1 GRB10 Growth factor receptor-bound protein 10 2 MNILGS(0.997)QS(0.99)PLHPS(0.005)T(0.005)LS(0.001)T(0.002)VIHR 71.418 0.014457 16260000 1553.1 1463.1 1575.5 1390.5 979.07 1019.7 1524.4 1636.2 1478.7 2047.3 TRUE FALSE 1574.848192 1622.846206 1177.745539 1301.319554 1112.43591 1200.529478 1813.646942 1497.194597 1620.735742 1630.059136 0.966129484 0.99557505 0.722517063 0.798326591 0.682451259 0.736494432 1.11262647 0.91849097 0.994280334 1 10.67070859 -7.754663932 24.99998033 0.999557029 0.813788707 0.444259019 0.103649423 169.1577022 624158.8966 0.044151889 0.033413001 1.76E-08 7.754663932 -0.185768322 MNILGSQS(ph)PLHPSTLSTVIHR ddPTM_K562_Paclitaxel_30min_R1 1 MNILGSQSPLHPSTLSTVIHR 21 0 A0A2R8YCL1;Q13322-3;Q13322-2;Q13322-4;Q13322 A0A2R8YCL1 GRB10 Growth factor receptor-bound protein 10 1 MNILGS(0.013)QS(0.987)PLHPSTLSTVIHR 68.587 0.0075446 86871000 1622.5 1630.8 1743.9 1614.5 1251.1 866.12 1817.2 2181.9 2170.8 2707.3 TRUE FALSE 1645.220006 1808.856259 1303.630877 1510.953196 1421.521001 1019.714221 2162.004214 1996.533976 2379.315039 2155.550774 0.763248088 0.839161982 0.604778552 0.700959223 0.659469969 0.473064348 1.00299387 0.926229157 1.103808395 1 11.07384083 -7.787526027 24.79493178 1.002110576 0.678473488 0.733568136 0.098794653 115.393599 109678.4923 0.042981702 0.028989137 1.63E-08 7.787526027 -0.323637088 MNPFWS(ph)MS(ph)TSS(ph)VRK ddPTM_K562_Paclitaxel_30min_R1 1 MNPFWSMSTSSVRK 14 1 H3BRT7;H3BSX7;H3BNB8;H3BVH0;H3BRV2;H3BM79;Q9H8T0;Q9H8T0-2 H3BRT7 AKTIP AKT-interacting protein 3 MNPFWS(0.985)MS(0.381)T(0.382)S(0.366)S(0.886)VRK 46.3 0.030621 0 0 0 160.68 0 56.451 0 0 64.357 0 141.73 TRUE FALSE 0 0 120.1143467 0 64.14058192 0 0 58.88947115 0 112.8453482 0 0 1.06441558 0 0.568393673 0 0 0.52185998 0 1 6.818203138 -11.76965256 4.928095054 1.054684123 0.253490498 0.299369306 0.34847242 0.157326487 0.007353698 0.253539399 0.079393929 1.70E-12 11.76965256 -0.801193625 MNS(ph)Y(ph)PYLADRHY(ph)SR ddPTM_K562_Paclitaxel_30min_R1 1 MNSYPYLADRHYSR 14 1 J3KPD3;G3V1T9;Q9Y580 J3KPD3;Q9Y580 RBM7 RNA-binding protein 7 3 MNS(1)Y(1)PY(0.317)LADRHY(0.571)S(0.113)R 57.348 0.027871 0 1243 1184.7 1395.4 1619.6 1281.4 1130.4 1357.2 1543.4 1463.8 1785.1 TRUE FALSE 1260.405835 1314.049552 1043.114012 1515.726105 1455.948374 1330.860568 1614.721615 1412.278536 1604.40453 1421.29564 0.886800606 0.924543434 0.733917689 1.066439706 1.024381088 0.936371386 1.136091302 0.993655716 1.128832373 1 10.47299096 -6.281454113 24.9367506 1.039492268 0.856032855 0.593517492 0.072879741 522.1858359 650600.2618 0.019887797 0.029540881 5.23E-07 6.281454113 -0.183459414 MNT(ph)IPQTRSIQS(ph)RFLQS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 MNTIPQTRSIQSRFLQSR 18 2 H3BQK2;Q2NL67 H3BQK2 PARP6 Poly [ADP-ribose] polymerase 6 3 MNT(0.936)IPQT(0.066)RS(0.042)IQS(0.956)RFLQS(1)R 63.726 0.014185 13129000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 MNVEEAGGEALGR ddPTM_K562_Paclitaxel_30min_R1 2 MNVEEAGGEALGR 13 0 P02100 P02100 HBE1 Hemoglobin subunit epsilon 0 ; 179.59 0.0014335 67299000 1629.16 2219.5 2310.2 2044.15 1989.85 1747.07 2062.08 2224.39 1788.56 2577.9 FALSE TRUE 1651.973266 2461.832516 1726.961438 1913.047368 2260.901258 2056.888334 2453.348915 2035.414185 1960.359179 2052.522565 0.804850234 1.199418003 0.841384873 0.932046936 1.101523217 1.002127026 1.195284747 0.991664706 0.955097504 1 11.00318237 -6.748681304 24.98406379 1.046308408 0.955278775 0.137358682 0.116785579 498.7512451 976697.7712 0.033673838 0.043188632 1.78E-07 6.748681304 -0.091029633 MNYMQNHQAGAPAPSLS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 MNYMQNHQAGAPAPSLSR 18 0 H0YJG4;Q9HCK8-2;Q9HCK8;A0A2R8Y840 H0YJG4 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 MNYMQNHQAGAPAPS(0.026)LS(0.974)R;MNYMQNHQAGAPAPS(0.267)LS(0.733)R 101 0.00077527 90038000 2851 2555.6 2592.2 2648.4 2266.6 2203.1 2796.1 3203.3 2675.6 4389.8 TRUE FALSE 2890.922796 2834.62905 1937.76705 2478.543478 2575.349294 2593.788852 3326.645378 2931.159671 2932.603335 3495.15635 0.827122597 0.81101638 0.554414983 0.709136654 0.736833788 0.742109534 0.951787286 0.838634778 0.839047825 1 11.77114128 -7.68997548 6.797152895 0.893537812 0.723971682 0.522028202 0.082619957 0.193749213 14.84723682 0.033272055 0.025547025 2.04E-08 7.68997548 -0.16956613 MPCES(ph)SPPESADTPTSTR ddPTM_K562_Paclitaxel_30min_R1 4 MPCESSPPESADTPTSTR 18 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 MPCES(0.462)S(0.462)PPES(0.06)ADT(0.001)PT(0.012)S(0.003)TR;MPCES(0.495)S(0.495)PPES(0.01)ADTPTSTR;MPCES(0.931)S(0.062)PPES(0.007)ADTPTSTR;MPCES(0.907)S(0.092)PPES(0.001)ADTPTSTR 232.01 8.54E-42 732538000 7520.1 7470.96 8759.3 7420.68 6906.08 6731.81 6877.6 8537.1 6583.72 8174.6 TRUE FALSE 7625.404601 8286.664678 6547.906381 6944.750799 7846.805017 7925.601984 8182.588697 7811.820068 7216.115723 6508.612033 1.171586901 1.273184611 1.006037285 1.067009489 1.205603434 1.217710004 1.257194108 1.200228256 1.108702698 1 12.6681342 -9.051534739 4.093253635 1.000134535 1.17365914 0.325885317 0.077519495 0.325411702 15.4176969 0.081265119 0.021329925 8.88E-10 9.051534739 0.173524605 MPCES(ph)SPPESADTPTSTRR ddPTM_K562_Paclitaxel_30min_R1 1 MPCESSPPESADTPTSTRR 19 1 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 MPCES(0.448)S(0.448)PPES(0.074)ADT(0.013)PT(0.006)S(0.006)T(0.006)RR 63.044 0.019517 59582000 847.42 778.45 1284.5 873.52 635.31 813.82 703.74 893.99 1076.9 804.36 TRUE FALSE 859.2864945 863.4438035 960.2120885 817.4963369 721.8499779 958.1395504 837.2709912 818.0399694 1180.341057 640.4309905 1.341731595 1.348223019 1.499321711 1.276478417 1.127131555 1.49608555 1.307355521 1.277327271 1.843041755 1 9.322899311 MPCESS(ph)PPESADTPTSTR ddPTM_K562_Paclitaxel_30min_R1 6 MPCESSPPESADTPTSTR 18 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 MPCES(0.038)S(0.962)PPESADTPTSTR;MPCES(0.227)S(0.752)PPES(0.02)ADTPTSTR;MPCES(0.223)S(0.775)PPES(0.002)ADTPTSTR;MPCES(0.036)S(0.956)PPES(0.007)ADTPT(0.001)STR;MPCES(0.036)S(0.959)PPES(0.005)ADTPTSTR;MPCES(0.319)S(0.609)PPES(0.048)ADT(0.004)PT(0.013)S(0.007)TR 177.04 1.53E-11 1007393000 8310.8 7922.14 9787.18 8822.98 7941.28 7975.71 6715.49 8058.46 7719.94 9383.68 TRUE FALSE 8427.176841 8787.106036 7316.285363 8257.113553 9023.016783 9390.090184 7989.71917 7373.843524 8461.474731 7471.280865 1.127942717 1.176117749 0.979254494 1.105180451 1.207693426 1.25682468 1.06939082 0.986958415 1.132533348 1 12.86713988 -7.983912086 24.95355666 1.041482418 1.139729267 0.271411277 0.077280793 342.943696 531930.3622 0.034470103 0.023231802 1.04E-08 7.983912086 0.098246849 MPCESSPPESADT(ph)PTSTR ddPTM_K562_Paclitaxel_30min_R1 2 MPCESSPPESADTPTSTR 18 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 MPCES(0.017)S(0.048)PPES(0.327)ADT(0.591)PT(0.013)S(0.003)TR;MPCESSPPES(0.007)ADT(0.511)PT(0.374)S(0.095)T(0.013)R 151.31 3.62E-09 24629000 865.24 893.96 1255 875.15 768.22 740.77 870.9 942.07 834.33 1168.34 TRUE FALSE 877.3560295 991.565576 938.1597284 819.021796 872.8645701 872.1351586 1036.148729 862.0352733 914.4711244 930.2316667 0.943158636 1.065934016 1.008522674 0.880449274 0.938330312 0.937546194 1.113860951 0.926688807 0.983057401 1 9.861446242 MPCQSLQPEPINT(ph)PTHTK ddPTM_K562_Paclitaxel_30min_R1 2 MPCQSLQPEPINTPTHTK 18 0 P46013;P46013-2 P46013 MKI67 Antigen KI-67 1 MPCQSLQPEPINT(0.739)PT(0.242)HT(0.018)K;MPCQSLQPEPINT(0.952)PT(0.043)HT(0.006)K 106.69 0.00089873 31381000 3122.6 2582.55 3877.4 3120.8 1950.39 2252.56 2316.14 2883 2250.81 3962.2 TRUE FALSE 3166.326034 2864.521543 2898.502415 2920.645856 2216.066138 2652.019888 2755.615474 2638.071155 2467.010357 3154.701465 1.00368484 0.908016677 0.918788179 0.925807367 0.702464611 0.840656372 0.873494847 0.836234802 0.782010718 1 11.62328777 -6.559974176 24.99786141 0.831056399 0.937007 0.300907245 0.074176521 192.9824189 130045.9019 0.020993385 0.027102417 2.75E-07 6.559974176 0.105950601 MPEEGSGCS(ph)VRR ddPTM_K562_Paclitaxel_30min_R1 1 MPEEGSGCSVRR 12 1 M0QZW2;P32970;P32970-2 M0QZW2 CD70 CD70 antigen 1 MPEEGS(0.006)GCS(0.994)VRR 51.252 0.030937 0 368.2 423.8 387.37 499.53 471.57 396.05 373.87 346.66 534 533.49 TRUE FALSE 373.355936 470.0719172 289.5736526 467.4923816 535.8058177 466.2839067 444.8098808 317.2090692 585.293086 424.7644452 0.878971722 1.106664935 0.681727616 1.100592074 1.261418708 1.097747027 1.047191887 0.746788185 1.377923912 1 8.7305192 MPETVPQEEMPGPPLNSES(ph)GEEAPTGR ddPTM_K562_Paclitaxel_30min_R1 2 MPETVPQEEMPGPPLNSESGEEAPTGR 27 0 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 MPETVPQEEMPGPPLNS(0.102)ES(0.889)GEEAPT(0.009)GR;MPETVPQEEMPGPPLNS(0.154)ES(0.845)GEEAPT(0.001)GR 135.06 1.37E-18 73015000 4433 4810.3 5634.3 5230.1 4398.5 3829.5 4589.6 5415.1 4547.1 5774.5 TRUE FALSE 4495.075677 5335.504821 4211.851281 4894.664795 4997.650167 4508.608056 5460.452641 4955.053455 4983.869272 4597.65373 0.977689043 1.160484267 0.916087102 1.064600573 1.087000122 0.980632366 1.187660698 1.077735242 1.084002747 1 12.1666821 -7.733506773 24.99950111 1.093827837 1.035802417 0.112243269 0.075968788 458.7128556 410544.8187 0.027644563 0.021408785 1.85E-08 7.733506773 -0.05802542 MPFQTS(ph)PGGK ddPTM_K562_Paclitaxel_30min_R1 1 MPFQTSPGGK 10 0 I6LM39;A0A087X1U4;P51608;P51608-2 I6LM39 MECP2 Methyl-CpG-binding protein 2 1 MPFQT(0.001)S(0.999)PGGK 108.9 0.0056211 14601000 4043.3 3250.3 6349.5 4520 3727.4 3744.3 3425.4 4178.9 2967.7 5299.7 TRUE FALSE 4099.918675 3605.178746 4746.490195 4230.107431 4235.134985 4408.299032 4075.351768 3823.876361 3252.760845 4219.618231 0.97163261 0.854385053 1.124862472 1.002485817 1.003677289 1.044715136 0.965810541 0.906213821 0.770866146 1 12.04289676 -8.242630889 3.226588042 0.874496511 0.99941186 0.252913671 0.081751292 0.320498628 6.876050647 0.046916921 0.022542188 5.72E-09 8.242630889 0.124915349 MPGMSPANPSLHS(ph)PVPDASHSPR ddPTM_K562_Paclitaxel_30min_R1 2 MPGMSPANPSLHSPVPDASHSPR 23 0 H7C3E5;O60244 H7C3E5 MED14 Mediator of RNA polymerase II transcription subunit 14 1 MPGMSPANPSLHS(0.999)PVPDAS(0.001)HSPR;MPGMSPANPS(0.005)LHS(0.992)PVPDAS(0.002)HSPR 155.63 1.69E-18 55377000 2411 2258.95 2946.1 2093.5 2558 2176.02 2056.41 2511.1 1983.19 2466.85 TRUE FALSE 2444.761439 2505.5898 2202.320618 1959.23228 2906.442907 2561.906594 2446.603062 2297.766381 2173.684261 1964.104616 1.244720581 1.275690602 1.121284783 0.997519309 1.479780091 1.304363614 1.245658221 1.169879834 1.10670493 1 10.93965606 -8.868494812 1.69978358 1.00417912 1.237029034 0.29975484 0.117001033 0.466801189 2.887530218 0.118032295 0.034547548 1.35E-09 8.868494812 0.232849914 MPGMSPANPSLHSPVPDASHS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 MPGMSPANPSLHSPVPDASHSPR 23 0 H7C3E5;O60244 H7C3E5 MED14 Mediator of RNA polymerase II transcription subunit 14 1 MPGMSPANPSLHSPVPDAS(0.121)HS(0.879)PR;MPGMSPANPSLHSPVPDAS(0.179)HS(0.821)PR 132.8 9.18E-12 23862000 1681.17 1306.26 1740.9 1525.39 1366.57 1171.92 1443.12 1689.63 1868.33 1378.54 TRUE FALSE 1704.711567 1448.881884 1301.388264 1427.558313 1552.71997 1379.743557 1716.944486 1546.085385 2047.791444 1097.592791 1.553136628 1.320054118 1.185674937 1.300626538 1.41465941 1.257063246 1.564281854 1.408614741 1.865711456 1 10.1001272 -7.762483305 24.99993961 1.493703244 1.332484528 0.059675551 0.218679075 63.85129336 1529037.933 0.083177154 0.059699095 1.73E-08 7.762483305 -0.161218716 MPLDLS(ph)PLATPIIR ddPTM_K562_Paclitaxel_30min_R1 3 MPLDLSPLATPIIR 14 0 B8ZZU6;E9PBF9;P15336-5;P15336;P15336-4;E9PEK8;H7C2N6;P15336-3;P15336-7;C9JCI8 B8ZZU6 ATF2 Cyclic AMP-dependent transcription factor ATF-2 1 MPLDLS(1)PLATPIIR;MPLDLS(1)PLATPIIR;MPLDLS(0.992)PLAT(0.008)PIIR 196.37 8.08E-09 241385000 3491.9 3129.73 4591.93 3553.49 3335.25 3473.14 3064.3 3268.62 2966.38 3679.12 TRUE FALSE 3540.797373 3471.444505 3432.640479 3325.585056 3789.567516 4089.052614 3645.734928 2990.930329 3251.314053 2929.313324 1.20874655 1.18507108 1.171824281 1.135278029 1.293670938 1.395908242 1.24456981 1.021034624 1.109923621 1 11.5163468 -8.258061376 24.56164459 1.049109334 1.234113827 0.586111222 0.073095349 183.571147 1334769.435 0.04064491 0.022217184 5.52E-09 8.258061376 0.185004494 MPLPS(ph)PTESR ddPTM_K562_Paclitaxel_30min_R1 2 MPLPSPTESR 10 0 O75665-3;O75665;A6NF31 O75665-3 OFD1 Oral-facial-digital syndrome 1 protein 1 MPLPS(0.94)PT(0.057)ES(0.003)R;MPLPS(0.855)PT(0.144)ES(0.001)R 104.07 0.0074524 76607000 1979.77 2196.95 2893.5 2556.2 2294.4 2295 1998.9 2414.5 1439.39 2889.4 TRUE FALSE 2007.492888 2436.820431 2163.000139 2392.256773 2606.936125 2701.986027 2378.18084 2209.373154 1577.649841 2300.538694 0.872618615 1.059239054 0.940214631 1.039868088 1.13318508 1.174501448 1.03374955 0.96037209 0.685774095 1 11.16775601 -8.530923059 24.40358941 0.836282272 1.039330702 0.339690875 0.107042364 154.1749853 467694.6551 0.071828198 0.02726466 2.94E-09 8.530923059 0.20304843 MPQDGS(ph)DDEDEEWPTLEK ddPTM_K562_Paclitaxel_30min_R1 2 MPQDGSDDEDEEWPTLEK 18 0 F8WBL2;Q13895 F8WBL2 BYSL Bystin 1 MPQDGS(1)DDEDEEWPTLEK;MPQDGS(1)DDEDEEWPTLEK 151.85 1.19E-09 81383000 9504.5 8297 15761.3 9884.7 8372.7 6976.6 6419.5 10041.7 10648.2 13221.1 TRUE FALSE 9637.592324 9202.894519 11782.16488 9250.739584 9513.203491 8213.802054 7637.566613 9188.594907 11671.00719 10526.63256 0.915543719 0.87424867 1.119271981 0.878793815 0.903727135 0.780287714 0.725546994 0.872890248 1.108712318 1 13.36175638 -4.769365928 16.39532126 0.907669053 48.65561736 0 0.120950177 7139.477715 507425.4967 0.030614135 2561.136472 1.70E-05 4.769365928 47.7479483 MPSARPPS(ph)PPLSSWER ddPTM_K562_Paclitaxel_30min_R1 1 MPSARPPSPPLSSWER 16 1 O43896 O43896 KIF1C Kinesin-like protein KIF1C 1 MPSARPPS(0.944)PPLS(0.028)S(0.028)WER 67.846 0.028241 0 1895.3 2054.3 2461.4 2302.5 2243.8 2254.2 2156.7 2112.7 1658.2 2056 TRUE FALSE 1921.840048 2278.595421 1839.989128 2154.827956 2549.443548 2653.950719 2565.922566 1933.212948 1817.477519 1636.986071 1.17401124 1.391945516 1.124010253 1.316338601 1.55740088 1.62124209 1.567467562 1.180958703 1.110258389 1 10.67682633 -8.475250405 5.006082912 1.078160083 1.395049636 0.442204932 0.156044713 0.213282229 12.23674972 0.106400259 0.046424861 3.35E-09 8.475250405 0.316889552 MPSPSDS(ph)SRS(ph)LT(ph)S(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 MPSPSDSSRSLTSR 14 1 Q96AD8;Q96H71;D6RD59;P81408-2;P81408-3;P81408;P81408-4 Q96AD8 C1orf2;FAM189B Protein FAM189B 4 MPS(0.032)PS(0.35)DS(0.573)S(0.309)RS(0.737)LT(1)S(1)R 79.885 0.01345 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 MPTVEELYRNY(ph)GILADATEQVGQHK ddPTM_K562_Paclitaxel_30min_R1 1 MPTVEELYRNYGILADATEQVGQHK 25 1 G3V1C3;Q9BZZ5-2;Q9BZZ5;E9PQK6;Q9BZZ5-3 G3V1C3 API5 Apoptosis inhibitor 5 1 MPTVEELY(0.006)RNY(0.558)GILADAT(0.435)EQVGQHK 40.012 0.026243 21222000 71.869 0 63.748 125.94 0 0 0 0 0 120.34 TRUE FALSE 72.87538773 0 47.65402897 117.8627721 0 0 0 0 0 95.81464194 0.760587174 0 0.497356437 1.230112326 0 0 0 0 0 1 6.582174234 -11.4339548 9.600553897 1.000002684 0.270342252 0.221843237 0.406391894 2.47E-05 1.46E-06 0.416396256 0.100990556 3.68E-12 11.4339548 -0.729660432 MQAHIQDLEEQLDEEEGAR ddPTM_K562_Paclitaxel_30min_R1 1 MQAHIQDLEEQLDEEEGAR 19 0 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 0 220.64 2.71E-36 5594600 1240.5 1008 1468.9 1462.8 917.02 1133.2 1242 1474.1 1013.2 1541.8 FALSE TRUE 1257.870827 1118.056849 1098.058028 1368.982555 1041.933649 1334.157109 1477.663016 1348.866004 1110.522387 1227.580314 1.024674975 0.910781019 0.894489766 1.115187772 0.84877025 1.086818593 1.203720034 1.098800615 0.904643366 1 10.2616017 -7.309833434 24.98433414 1.07402933 0.961231553 0.193700303 0.099570916 596.9187136 308168.4959 0.03517004 0.031017123 4.90E-08 7.309833434 -0.112797777 MQAQWEREER ddPTM_K562_Paclitaxel_30min_R1 1 MQAQWEREER 10 1 Q15424-2;Q15424;Q15424-3;Q15424-4;K7EII0 Q15424-2 SAFB Scaffold attachment factor B1 0 101.38 0.01822 14170000 731.86 674.48 729.19 921.51 585.86 763.72 626.12 824.09 727.74 719.53 FALSE TRUE 742.108298 748.1220073 545.096966 862.4084731 665.6640507 899.1550188 744.9230014 754.0784107 797.6426786 572.889391 1.295377973 1.305875129 0.951487276 1.505366457 1.161941661 1.569508936 1.300291144 1.316272255 1.392315325 1 9.162112811 MQAQWEREERER ddPTM_K562_Paclitaxel_30min_R1 2 MQAQWEREERER 12 2 Q15424-2;Q15424;Q15424-3;Q15424-4;K7EII0 Q15424-2 SAFB Scaffold attachment factor B1 0 ; 80.245 0.018966 37789000 2654 2212.33 2774 2319 2049.28 2074.77 1817.78 2282.7 4829.7 2626.6 FALSE TRUE 2691.164188 2453.879671 2073.669392 2170.269719 2328.426631 2442.701328 2162.694266 2088.770387 5293.614265 2091.297478 1.286839494 1.17337667 0.991570742 1.037762318 1.113388533 1.168031499 1.034139948 0.998791616 2.531258379 1 11.03018258 -8.672861642 22.18261103 1.767792221 1.097650985 0.361906389 0.353245277 7.248211633 1810.393035 0.213930981 0.080857916 2.12E-09 8.672861642 -0.670141236 MQAS(ph)IEK ddPTM_K562_Paclitaxel_30min_R1 2 MQASIEK 7 0 P06748-2;P06748;P06748-3 P06748-2 NPM1 Nucleophosmin 1 MQAS(1)IEK;MQAS(1)IEK 125.97 0.00099153 617790000 11874.6 10129.6 20756.3 13647.2 9477.1 7753.3 8526.9 9194.6 7078.1 9931.2 TRUE FALSE 12040.88104 11235.58398 15516.11535 12771.92967 10768.04147 9128.238893 10144.83476 8413.461339 7757.983131 7907.215989 1.522771232 1.420927922 1.962272863 1.615224586 1.361799334 1.154418813 1.2829844 1.06402321 0.981127004 1 12.94895412 -7.064797272 1.844142925 1.095233903 1.641845844 0.737231449 0.150460067 0.195096074 1.326575596 0.061661898 0.064817865 8.61E-08 7.064797272 0.546611942 MQAS(ph)IEKGGSLPK ddPTM_K562_Paclitaxel_30min_R1 1 MQASIEKGGSLPK 13 1 P06748-2;P06748 P06748-2 NPM1 Nucleophosmin 1 MQAS(1)IEKGGSLPK 123.72 0.0033902 42783000 2549.1 1671.4 4553.3 2041.6 1416.7 1242.1 1208.9 2386.1 2038 2833.7 TRUE FALSE 2584.795265 1853.889104 3403.7631 1910.660914 1609.678525 1462.368995 1438.282464 2183.385911 2233.759006 2256.190385 1.1456459 0.821690012 1.508632926 0.846852698 0.713449776 0.648158509 0.637482756 0.967731237 0.990057852 1 11.1396731 -6.489856926 24.95487627 0.803832461 1.133756924 0.359613378 0.19953926 686.0651112 518465.2618 0.056763011 0.08412136 3.24E-07 6.489856926 0.329924463 MQDIPEET(ph)ESRDGEAVASES ddPTM_K562_Paclitaxel_30min_R1 1 MQDIPEETESRDGEAVASES 20 1 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF0 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 MQDIPEET(0.758)ES(0.128)RDGEAVAS(0.057)ES(0.057) 105.5 0.00083333 0 2365.6 1973.9 2306.2 2216.3 1630.5 1664.7 1433.4 1827.9 1834.7 1816.1 TRUE FALSE 2398.725699 2189.417077 1723.971287 2074.156438 1852.601705 1959.911171 1705.380167 1672.608486 2010.931133 1445.977823 1.65889522 1.514142916 1.192252924 1.434431707 1.281210317 1.355422704 1.179395797 1.156731769 1.390706759 1 10.49782971 -2 0.291374201 1.166106425 4.891866024 0.587595748 0.118135335 39.06006692 0.554897343 0.122749472 75.10827305 0.01 2 3.725759599 MQHLIAR ddPTM_K562_Paclitaxel_30min_R1 2 MQHLIAR 7 0 B4DNK4;H3BTN5;P14618-2;P14618;H3BR70;P14618-3 B4DNK4 PKM Pyruvate kinase;Pyruvate kinase PKM 0 ; 132.96 0.0001482 12054500 10817.1 10897.8 12239.7 11338.6 9772.2 9949.7 10477 12486.8 11045 14184.6 FALSE TRUE 10968.57277 12087.65866 9149.636356 10611.39295 11103.33908 11714.13959 12464.95606 11425.9684 12105.9216 11293.77073 0.971205546 1.070294319 0.810148937 0.939579277 0.983138346 1.037221303 1.103701886 1.011705361 1.0719114 1 13.46323963 -7.146178378 2.904665805 1.050116155 0.947792444 0.334456248 0.064853693 0.326384788 5.307689075 0.023745359 0.023710021 7.14E-08 7.146178378 -0.102323711 MQLS(ph)IIDSQR ddPTM_K562_Paclitaxel_30min_R1 1 MQLSIIDSQR 10 0 A0A5F9ZHA0 A0A5F9ZHA0 1 MQLS(0.97)IIDS(0.03)QR 78.705 0.028742 47839000 299.85 586.57 463.24 514.69 420.18 532.31 519.83 515.95 703.14 751.59 TRUE FALSE 304.0488251 650.6136963 346.2893327 481.6800871 477.4156297 626.7077045 618.4650288 472.116827 770.6797387 598.4155454 0.508089784 1.087227264 0.578677034 0.804925759 0.797799511 1.047278449 1.033504282 0.78894479 1.287867176 1 9.225003843 -7.194967934 4.42475939 1.018787157 0.762583447 0.363650168 0.182472445 0.269103622 10.45389621 0.058591518 0.057864121 6.38E-08 7.194967934 -0.25620371 MQLVPSIEER ddPTM_K562_Paclitaxel_30min_R1 1 MQLVPSIEER 10 0 M0R0S8;Q96JL9-2;Q96JL9-3;Q96JL9 M0R0S8 ZNF333 Zinc finger protein 333 0 108.43 0.0064912 5255400 1029.7 819.28 1075.2 904.89 820.75 835.49 759.35 1070.7 834.44 1036.9 FALSE TRUE 1044.118977 908.731761 803.7524621 846.8544055 932.5500454 983.6524206 903.4326984 979.7373519 914.5916904 825.5792108 1.26471084 1.100720257 0.973561896 1.025770022 1.12957065 1.191469465 1.094301657 1.186727257 1.107818218 1 9.689262832 -5.264124026 6.722290295 1.094521968 1.267535389 0.36459151 0.06899895 0.13310845 41.17882096 0.01855103 0.106296922 5.44E-06 5.264124026 0.173013421 MQMHKDGDVY(ph)KYFS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 MQMHKDGDVYKYFSR 15 2 A0A0C4DGV9;P49917 A0A0C4DGV9 LIG4 DNA ligase;DNA ligase 4 2 MQMHKDGDVY(0.509)KY(0.509)FS(0.982)R 45.384 0.028234 37573000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 MQNNSSPS(ph)ISPNTSFTSDGSPSPLGGIKR ddPTM_K562_Paclitaxel_30min_R1 1 MQNNSSPSISPNTSFTSDGSPSPLGGIKR 29 1 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 1 MQNNS(0.003)S(0.009)PS(0.532)IS(0.219)PNT(0.219)S(0.017)FT(0.001)SDGSPSPLGGIKR 103.71 8.55E-09 29963000 592.08 583.1 1146.1 842.13 670.26 555.86 387.26 709.5 691.77 911.42 TRUE FALSE 600.3709467 646.7648299 856.7528802 788.119551 761.5607596 654.4339663 460.7405634 649.2235464 758.2175994 725.6721037 0.827330889 0.891263184 1.180633617 1.086054634 1.049455747 0.901831506 0.634915633 0.894651376 1.044848762 1 9.503174001 -7.361440008 5.675459506 0.870037886 1.014121003 0.131318837 0.137055403 0.420050696 19.55225336 0.052340248 0.04598426 4.35E-08 7.361440008 0.144083117 MQQHEQALADCRR ddPTM_K562_Paclitaxel_30min_R1 3 MQQHEQALADCRR 13 1 Q9UNE7;Q9UNE7-2 Q9UNE7 STUB1 E3 ubiquitin-protein ligase CHIP 0 ;; 101.71 0.0035125 22127100 3743.3 3663.3 4277.1 4267.7 3439.68 3583.7 3416.1 4042.2 4280 4039.3 FALSE TRUE 3795.717749 4063.271482 3197.293206 3993.988824 3908.22265 4219.218877 4064.287142 3698.789879 4691.113124 3216.088443 1.180228037 1.263420318 0.994155871 1.241877795 1.215209942 1.31191009 1.263736124 1.150089603 1.45863934 1 11.65109137 -6.462138355 24.99913684 1.244618188 1.151072181 0.090061852 0.125869854 545.929455 224689.1323 0.033468601 0.049641903 3.45E-07 6.462138355 -0.093546007 MQT(ph)RFRRIFPWK ddPTM_K562_Paclitaxel_30min_R1 1 MQTRFRRIFPWK 12 3 E7EWX8 E7EWX8 MGLL 1 MQT(1)RFRRIFPWK 65.465 0.026636 14445000 1291.7 1180.4 1661.7 1471 1122.6 1087.3 804.33 1314.6 1268.9 1712.8 TRUE FALSE 1309.787785 1309.280064 1242.183283 1376.656644 1275.517126 1280.117389 956.9474186 1202.916525 1390.783515 1363.73042 0.960444796 0.960072493 0.910871581 1.009478577 0.935314713 0.938688006 0.70171304 0.882077944 1.019837568 1 10.41334277 -7.545764573 24.99997757 0.880954655 0.954148686 0.065989026 0.084233504 481.7806058 526281.9066 0.032462439 0.02514665 2.85E-08 7.545764573 0.073194031 MRAHS(ph)PAEGASVESSSPGPK ddPTM_K562_Paclitaxel_30min_R1 1 MRAHSPAEGASVESSSPGPK 20 1 C9J4C4;Q8NFG4-3;Q8NFG4-2;Q8NFG4 C9J4C4 FLCN Folliculin 1 MRAHS(0.998)PAEGAS(0.002)VESSSPGPK 113.68 7.88E-05 5770600 1918.4 1378.8 2901.4 2459.1 1485 1509.2 1519.1 3062.9 2108.9 3321.1 TRUE FALSE 1945.263519 1529.342047 2168.905686 2301.384333 1687.282141 1776.83543 1807.341295 2802.687527 2311.469268 2644.257997 0.735655719 0.5783634 0.82023225 0.870332749 0.638092857 0.671959934 0.683496579 1.059914551 0.874146649 1 11.36864723 -8.25417006 24.98573913 0.975272953 0.714360826 0.643551447 0.090030097 354.8266675 1219596.938 0.044914088 0.025253004 5.57E-09 8.25417006 -0.260912127 MRDAGLLVEQPPLAGVAAS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 MRDAGLLVEQPPLAGVAASPR 21 1 Q13469-3;Q13469-4;Q13469-2;Q13469 Q13469-3 NFATC2 "Nuclear factor of activated T-cells, cytoplasmic 2" 1 MRDAGLLVEQPPLAGVAAS(1)PR;MRDAGLLVEQPPLAGVAAS(1)PR;MRDAGLLVEQPPLAGVAAS(1)PR 135.17 2.52E-11 81009000 2739.27 2958.44 2753.61 2607.37 2040.92 2396.91 3383.92 4111.8 4890.2 4812.6 TRUE FALSE 2777.628231 3281.452484 2058.427099 2440.144958 2318.927857 2821.968334 4026.001155 3762.476925 5359.92556 3831.789478 0.724890615 0.856375984 0.537197336 0.636816029 0.605181436 0.736462259 1.050684328 0.981911179 1.398804812 1 11.90380259 -7.826242579 2.106865716 1.142181743 0.66902882 0.718183158 0.131445902 0.171595672 1.55264034 0.067420703 0.041342197 1.49E-08 7.826242579 -0.473152923 MREDYDS(ph)VEQDGDEPGPQR ddPTM_K562_Paclitaxel_30min_R1 3 MREDYDSVEQDGDEPGPQR 19 1 Q9Y5S9-2;Q9Y5S9 Q9Y5S9-2 RBM8A RNA-binding protein 8A 1 MREDY(0.02)DS(0.98)VEQDGDEPGPQR;MREDYDS(1)VEQDGDEPGPQR;MREDY(0.025)DS(0.975)VEQDGDEPGPQR 289.81 8.54E-161 192787000 2875.56 3196.04 3741.2 3066.44 2994.6 2490.77 2542.3 3392.9 2718.75 3595.2 TRUE FALSE 2915.826712 3544.994456 2796.687789 2869.772263 3402.515219 2932.473087 3024.688153 3104.651967 2979.898085 2862.496267 1.018630748 1.238427626 0.977010109 1.002541836 1.188653155 1.024446083 1.056660995 1.084595988 1.041013789 1 11.4830581 -14.99999951 0.125462001 0.752550709 1.105978006 0.075560354 0.078126583 408.5724517 3.270058051 25.32635091 0.654293497 1.00E-15 14.99999951 0.353427297 MREDYDSVEQDGDEPGPQR ddPTM_K562_Paclitaxel_30min_R1 4 MREDYDSVEQDGDEPGPQR 19 1 Q9Y5S9-2;Q9Y5S9 Q9Y5S9-2 RBM8A RNA-binding protein 8A 0 ;;; 228.26 4.41E-45 129774000 2778.09 2955.78 3906.41 3440.42 2776.67 2356.99 2714.83 3419.39 3247.78 3867.72 FALSE TRUE 2816.991831 3278.502056 2920.188482 3219.76686 3154.899463 2774.969083 3229.95482 3128.891476 3559.74378 3079.476541 0.914763205 1.064629658 0.948274307 1.045556547 1.024492124 0.901117137 1.048864889 1.016046537 1.155957428 1 11.58846942 -8.259353264 2.374049929 1.072705947 0.990795525 0.205962483 0.06432276 0.466473031 5.04371935 0.04038943 0.0173723 5.50E-09 8.259353264 -0.081910422 MRLLQS(ph)LLDT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 MRLLQSLLDTR 11 1 Q13045-2;Q13045-3;Q13045 Q13045-2 FLII Protein flightless-1 homolog 2 MRLLQS(1)LLDT(1)R 59.84 0.027207 0 74.277 140.87 166.69 188.61 187.56 65.217 171.32 0 190.02 0 TRUE FALSE 75.31710716 156.250663 124.6070479 176.5133988 213.1088474 76.78231926 203.8270756 0 208.27227 0 0 MRNS(ph)RDRLLNR ddPTM_K562_Paclitaxel_30min_R1 1 MRNSRDRLLNR 11 3 Q86UA6-6;Q86UA6-5;Q86UA6-7;Q86UA6-3;Q86UA6-4;Q86UA6-9;Q86UA6-2;Q86UA6;Q86UA6-8 Q86UA6-6 RPAIN RPA-interacting protein 1 MRNS(1)RDRLLNR 62.166 0.025215 42090000 1413.2 1431.8 1826.4 1460.1 1369.6 1521.6 1379.6 1673.9 1385.6 1831.8 TRUE FALSE 1432.98916 1588.128766 1365.302731 1366.455721 1556.162708 1791.434396 1641.371898 1531.691747 1518.693071 1458.478155 0.982523568 1.088894449 0.936114625 0.936905169 1.066977042 1.228290181 1.1254004 1.050198621 1.041286129 1 10.51024806 -6.950404994 7.937736636 1.100258454 0.990891813 0.323952131 0.069755447 0.292155663 40.8098344 0.022871087 0.025913578 1.12E-07 6.950404994 -0.10936664 MRPEGSLTY(ph)R ddPTM_K562_Paclitaxel_30min_R1 4 MRPEGSLTYR 10 1 A0A087WSY7;C9JPU3;A0A1W2PPS3;F2Z2I4;A6NGT6;A6NEC3;A0A494C1R9;Q01534-2;Q01534;P0CW01;P0CV98;A6NKD2;P0CV99 A0A087WSY7 TSPY2;TSPY10;TSPY4;TSPY1;TSPY3 Testis-specific Y-encoded protein 1;Testis-specific Y-encoded protein 10;Testis-specific Y-encoded protein 3;Testis-specific Y-encoded protein 2;Testis-specific Y-encoded protein 4 1 MRPEGSLT(0.144)Y(0.856)R;MRPEGSLT(0.174)Y(0.826)R;MRPEGSLT(0.137)Y(0.863)R;MRPEGSLT(0.157)Y(0.843)R 104.42 0.0034521 447846000 0 136.28 315.21 343.273 395 289.281 0 152.67 62.984 188.784 TRUE FALSE 0 151.1595113 235.631337 321.2570062 448.8056874 340.5809236 0 139.6997306 69.03389462 150.3097172 0 1.00565362 1.567638749 2.137300317 2.985872742 2.265860984 0 0.929412504 0.459277656 1 7.231794469 -7.760388786 24.99998051 0.591290253 1.70833839 0.303049331 0.787866786 38.99089182 927865.3687 0.349278666 0.254891919 1.74E-08 7.760388786 1.117048138 MRPGGERPVEGGACNGRSELELLK ddPTM_K562_Paclitaxel_30min_R1 1 MRPGGERPVEGGACNGRSELELLK 24 3 Q8IYS1 Q8IYS1 PM20D2 Peptidase M20 domain-containing protein 2 0 45.047 0.030886 0 939.4 789.26 1197.7 793.38 641.51 611.24 907.39 1054.2 888.37 1489.5 FALSE TRUE 952.5544983 875.4340759 895.325822 742.4961578 728.8945229 719.6348318 1079.562516 964.6391299 973.7019078 1185.939082 0.803206937 0.738177946 0.754950937 0.626082881 0.614613797 0.6068059 0.910301829 0.813396863 0.821038721 1 10.21181419 -8.701055241 0.825124872 0.980447449 0.698944148 0.52621498 0.084551678 0.4988898 0.722750567 0.087234617 0.033669938 1.99E-09 8.701055241 -0.2815033 MRRS(ph)PS(ph)GLKS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 MRRSPSGLKSPR 12 3 Q9H606 Q9H606 PRORY "Proline-rich protein, Y-linked" 3 MRRS(1)PS(1)GLKS(1)PR 66.708 0.027676 8497900 69.61 0 173.19 129.17 144.22 62.03 0 0 161.42 124.8 TRUE FALSE 70.58475477 0 129.4660425 120.8856143 163.8652057 73.03014956 0 0 176.9251122 99.3656915 0.71035338 0 1.302924989 1.216572969 1.649112518 0.734963431 0 0 1.780545273 1 6.634675906 -7.515439833 24.87963125 0.576899969 0.977023273 0.032281085 0.627247164 965.8179211 3230224.325 0.243607917 0.196959785 3.05E-08 7.515439833 0.400123304 MRS(ph)S(ph)S(ph)LPGARSPRR ddPTM_K562_Paclitaxel_30min_R1 1 MRSSSLPGARSPRR 14 3 P0DP75 P0DP75 3 MRS(1)S(1)S(1)LPGARSPRR 80.102 0.014462 72866000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 MRSLSST(ph)S(ph)S(ph)GS(ph)KDK ddPTM_K562_Paclitaxel_30min_R1 1 MRSLSSTSSGSKDK 14 2 A0A096LPB3;A0A096LNU0;D6REY2;P23508;P23508-2 A0A096LPB3 MCC Colorectal mutant cancer protein 4 MRS(0.421)LS(0.235)S(0.512)T(0.531)S(0.531)S(0.823)GS(0.946)KDK 41.378 0.031027 0 0 139.7 0 0 0 0 0 133 0 0 TRUE FALSE 0 154.9529184 0 0 0 0 0 121.7008198 0 0 0 MS(ph)EGRGLPPPPR ddPTM_K562_Paclitaxel_30min_R1 1 MSEGRGLPPPPR 12 1 Q15424-2;Q15424;Q15424-3;Q15424-4 Q15424-2 SAFB Scaffold attachment factor B1 1 MS(1)EGRGLPPPPR 107.99 0.019569 64924000 1037.8 1075.9 1820.3 1479.7 884.43 1036.5 798.86 1407.5 1317.1 1632.2 TRUE FALSE 1052.332402 1193.3704 1360.742752 1384.798665 1004.90434 1220.308722 950.4395147 1287.92409 1443.61334 1299.556744 0.809762565 0.918290337 1.047082213 1.065593073 0.773266996 0.93901919 0.731356687 0.991048752 1.110850562 1 10.34380391 -8.517141929 24.40148481 1.053933478 0.904241801 0.273613103 0.104863153 273.8248584 1164750.019 0.069243792 0.028001849 3.04E-09 8.517141929 -0.149691677 MS(ph)GFIYQGK ddPTM_K562_Paclitaxel_30min_R1 2 MSGFIYQGK 9 0 F6SJA5;E7EUY6;E9PDQ5;B1ALK7;A0A2R8YG42;Q15052-2;Q14155-6;Q14155-1;Q14155-5;Q14155-2;Q15052;Q14155-3;Q14155 F6SJA5 ARHGEF7;ARHGEF6 Rho guanine nucleotide exchange factor 6;Rho guanine nucleotide exchange factor 7 1 MS(1)GFIYQGK;MS(1)GFIYQGK 112.13 0.0053125 52072000 5234 4632.2 7452.1 5112.6 4423.8 3496.9 3980.3 4784.7 3938.7 6825.1 TRUE FALSE 5307.292148 5137.959261 5570.725189 4784.700719 5026.396456 4117.026116 4735.541146 4378.20987 4317.029734 5434.140874 0.976657078 0.945496148 1.025134482 0.8804889 0.924966167 0.757622265 0.87144247 0.805685751 0.794427276 1 12.40783625 -6.675595821 1.738943682 0.838166664 0.976700429 0.377447815 0.068651013 0.326733448 2.034325887 0.022399929 0.031985407 2.11E-07 6.675595821 0.138533765 MS(ph)GGSTMSSGGGNTNNSNSK ddPTM_K562_Paclitaxel_30min_R1 3 MSGGSTMSSGGGNTNNSNSK 20 0 A0A6E1WJ75;Q86U70-3;Q86U70-2;Q86U70 A0A6E1WJ75 LDB1 LIM domain-binding protein 1 1 MS(0.999)GGSTMSSGGGNTNNSNSK;MS(0.981)GGS(0.014)T(0.004)MSSGGGNTNNSNSK;MS(1)GGSTMSSGGGNTNNSNSK 309.09 7.57E-211 58504600 3562.38 3127.86 7391.4 4423.28 3073.04 3186.11 3223.32 4549.31 3751.96 5360.58 TRUE FALSE 3612.264311 3469.370333 5525.349654 4139.590619 3491.640075 3751.121873 3834.928143 4162.81772 4112.352522 4268.090854 0.846341944 0.812862343 1.294571705 0.969892807 0.818080073 0.878875826 0.898511366 0.975334842 0.963511008 1 12.05937517 -8.409521019 10.82618682 0.977653741 0.935839237 0.026850932 0.131219899 2.88652884 256.473746 0.076919514 0.036893661 3.89E-09 8.409521019 -0.041814504 MS(ph)LWES(ph)LGESWMRPR ddPTM_K562_Paclitaxel_30min_R1 2 MSLWESLGESWMRPR 15 1 A0A087WX39;Q9H6S3-2 A0A087WX39 EPS8L2 2 MS(1)LWES(0.717)LGES(0.283)WMRPR;MS(1)LWES(0.693)LGES(0.307)WMRPR 113.52 0.020697 155252000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 MS(ph)PMGTASGSNSPTSDSASVQR ddPTM_K562_Paclitaxel_30min_R1 8 MSPMGTASGSNSPTSDSASVQR 22 0 Q5QPB1;O76080 Q5QPB1 ZFAND5 AN1-type zinc finger protein 5 1 MS(1)PMGTASGSNSPTSDSASVQR;MS(0.87)PMGT(0.046)AS(0.023)GS(0.026)NS(0.03)PT(0.002)S(0.002)DSASVQR;MS(0.994)PMGT(0.006)ASGSNSPTSDSASVQR;MS(0.971)PMGT(0.028)AS(0.001)GSNSPTSDSASVQR;MS(0.997)PMGT(0.003)ASGSNSPTSDSASVQR;MS(1)PMGTASGSNSPTSDSASVQR;MS(1)PMGTASGSNSPTSDSASVQR;MS(1)PMGTASGSNSPTSDSASVQR 229.51 5.25E-54 241593700 9253.2 9461.8 13068.3 11163 8653.89 8382.35 8871.03 11050.62 6495.37 11399.5 TRUE FALSE 9382.773349 10494.87132 9769.046038 10447.05514 9832.69633 9868.842078 10554.26163 10111.80086 7119.279311 9076.275643 1.033769105 1.156297113 1.076327606 1.151028853 1.083340427 1.08732287 1.16284058 1.114091424 0.78438333 1 13.14788471 -8.743396852 24.99996377 0.892191707 1.11040709 0.662033692 0.061696387 108.0376561 149699.6123 0.037964075 0.014286003 1.81E-09 8.743396852 0.218215383 MS(ph)PQEAWLLNR ddPTM_K562_Paclitaxel_30min_R1 1 MSPQEAWLLNR 11 0 I3L2X7 I3L2X7 CEP131 1 MS(1)PQEAWLLNR 124.48 0.001984 10825000 976.06 884.58 1266.4 978.89 1004.1 952.13 755.32 1141.5 810.38 1179.1 TRUE FALSE 989.7278514 981.1614359 946.6816574 916.1083767 1140.87542 1120.976887 898.638027 1044.52245 888.2206199 938.7987728 1.054249196 1.045124327 1.008396778 0.975830394 1.215250225 1.194054487 0.957221135 1.112615909 0.946124607 1 9.874672146 -8.767336727 24.99868332 0.973062274 1.069470158 0.186526215 0.081245637 278.2398223 1179391.224 0.075065339 0.021448617 1.71E-09 8.767336727 0.096407884 MS(ph)PRS(ph)MLWPGT(ph)GIIHPTS(ph)TT ddPTM_K562_Paclitaxel_30min_R1 1 MSPRSMLWPGTGIIHPTSTT 20 1 H7C4R8 H7C4R8 HGD 4 MS(0.997)PRS(0.984)MLWPGT(0.81)GIIHPT(0.299)S(0.305)T(0.302)T(0.302) 43.261 0.030077 27234000 0 0 0 63.599 0 0 0 167.49 0 0 TRUE FALSE 0 0 0 59.5200448 0 0 0 153.2606791 0 0 0 MS(ph)PTPPLFSLPEAR ddPTM_K562_Paclitaxel_30min_R1 1 MSPTPPLFSLPEAR 14 0 J3KRD7;J3QQZ3;J3KT14;A0A087WWS1;Q96FV9-2;Q96FV9 J3KRD7 THOC1 THO complex subunit 1 1 MS(0.998)PT(0.002)PPLFSLPEAR 177.36 3.54E-06 12043000 637.38 642.53 764.21 781.83 824.95 579.24 551.75 820.66 524.96 741.74 TRUE FALSE 646.3052865 712.6835983 571.2757339 731.6869231 937.3221565 681.9600811 656.4416822 750.9398106 575.3847536 590.5729809 1.094369887 1.206766346 0.967324535 1.238944122 1.587140264 1.154743111 1.11153355 1.271544475 0.974282218 1 9.205971543 -8.770166679 24.76743298 0.987140908 1.205451694 0.244984463 0.152297182 282.7228671 802312.4561 0.146704936 0.0402499 1.70E-09 8.770166679 0.218310786 MS(ph)TAKRT(ph)LS(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 MSTAKRTLSK 10 2 C9J5L1;E7EW00;H0Y8D9;E7ET15;O15042-2;O15042;U3KPT1;C9JDJ7 C9J5L1;C9JDJ7 U2SURP U2 snRNP-associated SURP motif-containing protein 3 MS(0.914)T(0.087)AKRT(1)LS(1)K 69.598 0.030126 0 626.97 539.41 881.97 737.21 641.59 689.19 694.95 1003.4 914.55 591.26 TRUE FALSE 635.7495144 598.304608 659.3057654 689.9286502 728.9854202 811.4081698 826.8131346 918.154907 1002.396614 470.7608875 1.350472249 1.270931005 1.400510924 1.465560688 1.548525886 1.723609993 1.756333537 1.950363617 2.12931159 1 8.878850651 -6.913863227 1.244460307 1.787719478 1.328204428 0.238710411 0.278299755 0.531998792 1.731341255 0.114369158 0.141574564 1.22E-07 6.913863227 -0.459515049 MS(ph)VAENEDQLRAK ddPTM_K562_Paclitaxel_30min_R1 1 MSVAENEDQLRAK 13 1 H3BMD3 H3BMD3 C15orf41 1 MS(1)VAENEDQLRAK 77.24 0.022649 5453700 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 MS(ph)VSLQNYS(ph)PMMAQK ddPTM_K562_Paclitaxel_30min_R1 1 MSVSLQNYSPMMAQK 15 0 A0A087WUB1 A0A087WUB1 CCDC129 2 MS(0.725)VS(0.298)LQNY(0.19)S(0.786)PMMAQK 46.156 0.030389 0 216.57 296.51 475 283.02 213.67 205.95 232.27 279.64 277.12 238.7 TRUE FALSE 219.6026482 328.8839645 355.0803753 264.868364 242.7754715 242.4723408 276.34202 255.8828365 303.7386142 190.052809 1.155482254 1.730487259 1.868324795 1.393656665 1.277410593 1.275815612 1.454027549 1.346377556 1.598180084 1 7.570256538 -6.496572164 24.41232295 1.345578253 1.604612695 0.210769864 0.221723744 834.3011322 774225.1876 0.061498067 0.090843184 3.19E-07 6.496572164 0.259034442 MS(ph)YEQLMQLYSAR ddPTM_K562_Paclitaxel_30min_R1 1 MSYEQLMQLYSAR 13 0 A0A0B4J2B4 A0A0B4J2B4 RPS15 1 MS(1)YEQLMQLYSAR 132.23 0.00031779 2907900 417.01 353.46 702.09 493.39 471.35 373.83 589.32 866.53 611.98 662.23 TRUE FALSE 422.8494266 392.0519581 524.8386962 461.7461737 535.55585 440.1235017 701.1403935 792.9128678 670.7634134 527.2671625 0.801964273 0.743554665 0.995394239 0.875734744 1.015720091 0.834725796 1.329763056 1.503816138 1.272150934 1 9.04239034 -7.764415753 24.99944462 1.318417303 0.883258392 0.655382405 0.140246246 43.74448757 367415.8737 0.055845359 0.039495537 1.72E-08 7.764415753 -0.435158911 MSCFSRPS(ph)MSPTPLDR ddPTM_K562_Paclitaxel_30min_R1 1 MSCFSRPSMSPTPLDR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 MSCFS(0.094)RPS(0.629)MS(0.277)PT(0.001)PLDR 207.08 1.26E-16 92123000 1323.3 1772.9 2110.6 2067.3 1557.6 1795.8 1811.7 2108.2 1951.3 2157.2 TRUE FALSE 1341.830283 1966.471218 1577.752926 1934.712631 1769.77149 2114.259916 2155.460617 1929.095251 2138.731084 1717.561456 0.781241497 1.14492044 0.918600567 1.12642993 1.030397768 1.230966094 1.254953999 1.123159375 1.245213716 1 10.74614601 -4.160001252 0.518187286 1.170237911 4.63E-11 0.458945886 0.107297274 10.98662697 0.945979517 0.057098144 9.99234738 6.92E-05 4.160001252 -1.170237911 MSCFSRPSMS(ph)PTPLDR ddPTM_K562_Paclitaxel_30min_R1 3 MSCFSRPSMSPTPLDR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 MSCFS(0.012)RPS(0.03)MS(0.714)PT(0.244)PLDR;MSCFSRPS(0.003)MS(0.769)PT(0.228)PLDR;MS(0.013)CFS(0.141)RPS(0.024)MS(0.574)PT(0.248)PLDR 95.236 0.0049897 2550494000 5238 4923.46 6136.7 5377.4 4313.8 4582.69 4542.6 6087.7 5414.7 6227.9 TRUE FALSE 5311.348161 5461.020013 4587.414187 5032.517632 4901.412593 5395.365727 5404.534636 5570.511887 5934.806129 4958.650561 1.071127738 1.101311727 0.925133588 1.014896607 0.988456947 1.088071374 1.089920447 1.123392709 1.196859116 1 12.27573185 -7.43379073 3.914136922 1.110821817 1.019321663 0.281734714 0.062969349 0.300449998 8.428563982 0.023880899 0.020404745 3.68E-08 7.43379073 -0.091500154 MSCFSRPSMSPT(ph)PLDR ddPTM_K562_Paclitaxel_30min_R1 1 MSCFSRPSMSPTPLDR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 MSCFSRPSMS(0.207)PT(0.793)PLDR 176.25 1.05E-08 94953000 2475.6 2666.1 2561.6 2678.9 2058 2523.1 2259.3 2495.8 2394.6 2894.7 TRUE FALSE 2510.266038 2957.193814 1914.892399 2507.087344 2338.334442 2970.536359 2687.990381 2283.766212 2624.612029 2304.758551 1.089166601 1.283081828 0.830842952 1.087787414 1.014568073 1.288870957 1.166278515 0.99089174 1.138779604 1 11.1703999 -11.49626207 2.926007585 0.996717306 1.098033075 0.05005345 0.129228356 25411156.85 26405162.36 663311.9051 0.033428169 3.19E-12 11.49626207 0.101315769 MSDYS(ph)PNSTGSVQNTSR ddPTM_K562_Paclitaxel_30min_R1 2 MSDYSPNSTGSVQNTSR 17 0 H7C1W4;Q93075 H7C1W4 TATDN2 Putative deoxyribonuclease TATDN2 1 MSDYS(0.861)PNS(0.112)T(0.026)GS(0.001)VQNTSR;MSDYS(0.968)PNS(0.025)T(0.006)GS(0.001)VQNTSR 134.83 1.43E-07 40353000 1462.09 1522.28 1755.68 1630.46 1461.88 1312.58 1185.31 1337.75 1259.28 1346.97 TRUE FALSE 1482.563771 1688.487678 1312.43687 1525.889593 1661.012806 1545.347633 1410.216385 1224.099788 1380.239471 1072.456775 1.382399558 1.57441094 1.223766683 1.422798223 1.54879231 1.440941649 1.314940069 1.141397785 1.286988439 1 10.06670379 -8.620400659 0.799105001 1.026704916 1.438198416 0.602703081 0.107148424 0.410817369 0.543819425 0.103103461 0.041306116 2.40E-09 8.620400659 0.4114935 MSEHVRT(ph)RS(ph)QS(ph)S(ph)ER ddPTM_K562_Paclitaxel_30min_R1 1 MSEHVRTRSQSSER 14 2 Q5JRL0;Q5JRK9 Q5JRL0 PAGE2B Putative G antigen family E member 3 4 MS(0.211)EHVRT(0.896)RS(0.896)QS(0.997)S(1)ER 40.941 0.031105 0 316.11 290.2 394.21 214.95 181.79 269.06 244.11 328.77 99.431 284.65 TRUE FALSE 320.5365153 321.8850174 294.68681 201.1640691 206.5528757 316.7740132 290.4285982 300.8389364 108.9817918 226.6381738 1.414309469 1.420259491 1.300252314 0.887600115 0.911377251 1.397708109 1.281463724 1.327397461 0.480862469 1 7.824247071 -2 0.363702986 1.033943885 6.803461921 0.227255208 0.259435092 110.3227427 1.536657371 0.218513768 442.0913048 0.01 2 5.769518037 MSEILPYS(ph)EDK ddPTM_K562_Paclitaxel_30min_R1 1 MSEILPYSEDK 11 0 Q96S95 Q96S95 CAMK2N2 Calcium/calmodulin-dependent protein kinase II inhibitor 2 1 MSEILPY(0.097)S(0.903)EDK 97.472 0.0081898 14853000 164.43 0 53.724 147.36 0 0 0 0 115.45 147.68 TRUE FALSE 166.7325273 0 40.16071175 137.9089892 0 0 0 0 126.5394883 117.5827349 1.418001779 0 0.341552795 1.172867677 0 0 0 0 1.076174052 1 6.87753243 -11.18821333 11.44915906 1 0.398241454 0.081460473 0.538121213 4.11E-09 3.35E-10 0.514342624 0.12474641 6.48E-12 11.18821333 -0.601758546 MSEPLQSVVDHMATHLGVSPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 MSEPLQSVVDHMATHLGVSPSR 22 0 Q8NCF5;Q8NCF5-2 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 MSEPLQSVVDHMAT(0.008)HLGVS(0.393)PS(0.599)R 83.179 0.0008301 7684000 728.69 889.19 810.94 677.38 638.01 680.86 746.18 882.2 686.82 1110.4 TRUE FALSE 738.8939082 986.2747712 606.2081674 633.9358786 724.9177636 801.6009613 887.7637597 807.2516035 752.7921298 884.0998705 0.835758417 1.11556941 0.685678381 0.717041026 0.819950085 0.906685984 1.004144203 0.913077391 0.851478611 1 9.78806554 -7.401048147 4.644415118 0.937281268 0.836074702 0.164329874 0.114746908 0.501782268 16.83599131 0.044468425 0.038713717 3.97E-08 7.401048147 -0.101206566 MSGGST(ph)MSSGGGNTNNSNSK ddPTM_K562_Paclitaxel_30min_R1 1 MSGGSTMSSGGGNTNNSNSK 20 0 A0A6E1WJ75;Q86U70-3;Q86U70-2;Q86U70 A0A6E1WJ75 LDB1 LIM domain-binding protein 1 1 MS(0.032)GGS(0.178)T(0.757)MS(0.032)S(0.001)GGGNTNNSNSK 91.712 0.0021212 2397200 676.94 717.94 1453.9 1046.2 628.71 618.78 528.75 752.06 804.56 860.83 TRUE FALSE 686.4192485 796.3271171 1086.844963 979.1014146 714.3509461 728.5119449 629.0775522 688.1678088 881.8415829 685.3923735 1.001498229 1.161855819 1.585726666 1.428526859 1.042251087 1.062912243 0.917835647 1.004049411 1.286622987 1 9.420786329 -6.778705197 24.86930468 1.046290491 1.305743212 0.329193292 0.168883172 274.5324827 395428.8255 0.056353856 0.064052831 1.66E-07 6.778705197 0.259452721 MSGHSPTRGAMQVS(ph)GSR ddPTM_K562_Paclitaxel_30min_R1 1 MSGHSPTRGAMQVSGSR 17 1 E3W979 E3W979 DNPEP 1 MSGHSPTRGAMQVS(0.957)GS(0.043)R 110.64 0.0024586 18044000 0 0 0 79.304 0 0 132.12 0 0 0 TRUE FALSE 0 0 0 74.21779639 0 0 157.1890803 0 0 0 0 MSHSSS(ph)SDTDINEIHTNHK ddPTM_K562_Paclitaxel_30min_R1 1 MSHSSSSDTDINEIHTNHK 19 0 P46100-4;P46100;A0A096LNW1;A0A096LNL9;P46100-6;P46100-2;P46100-5;P46100-3 P46100-4 ATRX Transcriptional regulator ATRX 1 MS(0.178)HS(0.129)S(0.129)S(0.447)S(0.109)DT(0.008)DINEIHTNHK 62.099 0.023338 7968300 872 880.93 1710.5 1197.3 1014.4 866.26 573.25 875.94 990.85 1243.1 TRUE FALSE 884.2106904 977.1129165 1278.66312 1120.510537 1152.578454 1019.879048 682.0211949 801.5234296 1086.02557 989.7555376 0.893362711 0.987226521 1.291897919 1.132108379 1.164508214 1.030435304 0.689080454 0.809819596 1.097266475 1 9.950928424 -7.536377163 24.53673071 0.87984528 1.100674397 0.292996074 0.141591592 223.9540565 407087.7091 0.056172683 0.043536819 2.91E-08 7.536377163 0.220829117 MSMQELNPET(ph)STDCDAR ddPTM_K562_Paclitaxel_30min_R1 1 MSMQELNPETSTDCDAR 17 0 H0YNU5;A0A3B3IT82;P54132 H0YNU5 BLM Bloom syndrome protein 1 MSMQELNPET(0.57)S(0.326)T(0.103)DCDAR 118.52 6.04E-05 0 1148.9 1158 1073.9 1209.5 995.2 962.91 895.7 1147.6 1416.7 1161.4 TRUE FALSE 1164.988145 1284.434356 802.7806632 1131.928084 1130.763089 1133.668569 1065.654399 1050.104217 1552.780365 924.7060425 1.259847012 1.389019101 0.868146877 1.224095044 1.22283519 1.225977247 1.152425041 1.135608689 1.679215117 1 9.852851006 MSMT(ph)S(ph)ILTR ddPTM_K562_Paclitaxel_30min_R1 1 MSMTSILTR 9 0 Q6P5Q4 Q6P5Q4 LMOD2 Leiomodin-2 2 MS(0.012)MT(0.89)S(0.678)ILT(0.421)R 49.189 0.030909 4811300 2497.1 2181.3 3188.9 3159.2 2802.5 2723.6 1436.3 2161.8 3033.5 2045 TRUE FALSE 2532.067104 2419.461711 2383.822755 2956.583052 3184.247947 3206.592219 1708.830427 1978.141596 3324.881229 1628.227877 1.5551061 1.485947848 1.464059662 1.815828787 1.955652517 1.969375579 1.049503236 1.214904636 2.042024507 1 10.66908691 -12.53018241 0.399903335 7.52E-10 1.623348857 0.246564136 0.316520177 125.3556402 5.58854299 109.5986114 0.215638074 2.95E-13 12.53018241 1.623348856 MSQPGSPS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 MSQPGSPSPK 10 0 Q14839-2;Q14839;A0A0C4DGG9;A0A2R8Y521;A0A2R8Y212;F5GWX5;A0A2R8YFD8;A0A2U3TZM0;A0A2R8YFK9;A0A2R8Y5J0;A0A2R8YDJ9;A0A2R8Y425;A0A2R8Y445;A0A2R8Y8C1;A0A2R8YER1;A0A2R8YD40;A0A2R8Y4X2;A0A2R8YDW2;A0A2R8Y7I0;A0A2R8Y7M9;A0A2R8Y5M9;A0A2R8YE38 Q14839-2 CHD4 Chromodomain-helicase-DNA-binding protein 4 1 MSQPGS(0.034)PS(0.966)PK;MSQPGS(0.275)PS(0.725)PK 168.82 9.80E-05 513020000 20114 16215.8 32407 22808 16449.2 14337.6 14576.4 21568 17402.9 23395 TRUE FALSE 20395.65806 17986.29588 24225.45205 21345.19696 18689.85953 16880.17205 17342.19581 19735.66378 19074.5263 18627.08616 1.094946246 0.965599006 1.300549739 1.145922491 1.003370005 0.906216458 0.931020325 1.05951428 1.024020941 1 14.18511439 -6.814628615 5.802962058 0.982105339 1.127631154 0.386243869 0.08614684 0.217823487 15.66374161 0.028528471 0.032934493 1.53E-07 6.814628615 0.145525814 MSTSQNS(ph)IPFEHHGK ddPTM_K562_Paclitaxel_30min_R1 1 MSTSQNSIPFEHHGK 15 0 P48730-2 P48730-2 CSNK1D Casein kinase I isoform delta 1 MSTS(0.001)QNS(0.999)IPFEHHGK 111.78 0.001265 16582000 3600.4 3164.1 6130.2 4181.6 3153.5 3171.4 3227.9 3794.6 3284.5 4834.5 TRUE FALSE 3650.816708 3509.567138 4582.555193 3913.410892 3583.060089 3733.803261 3840.377174 3472.225045 3599.990901 3849.226246 0.948454696 0.911759121 1.190513339 1.016674688 0.930852036 0.970013977 0.997701078 0.902057926 0.935250534 1 11.91035276 -6.719548702 9.542773843 0.953890942 1.021897163 0.140001519 0.073383386 0.728392036 157.9417188 0.022740812 0.029251796 1.91E-07 6.719548702 0.068006221 MSYLTAMGADYLS(ph)CDSR ddPTM_K562_Paclitaxel_30min_R1 2 MSYLTAMGADYLSCDSR 17 0 Q9UDY2-7;Q9UDY2-4;A0A3B3IU51;A0A1B0GTW1;A0A3B3ITE1;A0A2R8YDH4;Q9UDY2-2;Q9UDY2-6;Q9UDY2-3;Q9UDY2;Q9UDY2-5;A0A3B3ISF1;A0A3B3ISZ5;A0A3B3IRI3 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 MSYLTAMGADYLS(0.996)CDS(0.004)R;MSYLTAMGADYLS(0.992)CDS(0.008)R 223.15 1.12E-30 40401000 2086.65 2341.8 2107.4 1821.83 1778.54 1833.86 2190.07 2684.6 2511.4 3154.7 TRUE FALSE 2115.869538 2597.485643 1575.360806 1704.985978 2020.807259 2159.069322 2605.62435 2456.526473 2752.631191 2511.770408 0.842381744 1.034125426 0.627191403 0.678798497 0.804535021 0.859580683 1.037365653 0.978005977 1.095892834 1 11.29448888 -7.646885693 3.066654869 1.028272696 0.79600066 0.519867553 0.104756931 0.231234975 4.349219218 0.047813929 0.035188142 2.25E-08 7.646885693 -0.232272035 MT(ph)FFVT(ph)QLAIT(ph)EK ddPTM_K562_Paclitaxel_30min_R1 1 MTFFVTQLAITEK 13 0 Q6W5P4-2 Q6W5P4-2 3 MT(1)FFVT(1)QLAIT(1)EK 43.282 0.030578 0 346.77 370.41 592.02 412.06 456.53 446.98 319.62 380.5 568.02 354.86 TRUE FALSE 351.6258499 410.8526164 442.557229 385.6323159 518.7171151 526.2456271 380.2662265 348.17415 622.580859 282.5393372 1.244519979 1.45414306 1.566356152 1.36488009 1.835911134 1.862557024 1.345887727 1.232303273 2.203519217 1 8.142307934 -4.987224542 1.154590329 1.574450087 0.902107199 0.071915169 0.330010252 7.464053045 5.525188275 0.097438705 7.024769156 1.03E-05 4.987224542 -0.672342888 MT(ph)KRLYDEK ddPTM_K562_Paclitaxel_30min_R1 1 MTKRLYDEK 9 2 Q00987-8 Q00987-8 MDM2 E3 ubiquitin-protein ligase Mdm2 1 MT(1)KRLYDEK 70.412 0.027467 24782000 1599.7 1525 2574.5 1758.7 1546.2 1637.4 1296.8 1848.7 1247.1 2624.8 TRUE FALSE 1622.100735 1691.504657 1924.535634 1645.904854 1756.818617 1927.7699 1542.86103 1691.641396 1366.889527 2089.864319 0.776175142 0.809384916 0.92089023 0.787565412 0.840637644 0.922437826 0.738258946 0.809450346 0.654056589 1 11.02919357 -7.784827798 24.99762578 0.784562366 0.8422615 0.036496461 0.093414063 637.6395113 681504.5426 0.036943356 0.024923689 1.64E-08 7.784827798 0.057699134 MT(ph)LMAAVYT(ph)IALR ddPTM_K562_Paclitaxel_30min_R1 1 MTLMAAVYTIALR 13 0 A0A087WVM1 A0A087WVM1 SLC35A1 2 MT(1)LMAAVY(0.268)T(0.732)IALR 63.076 0.02321 0 144.88 210.8 271.57 190.06 120.84 193.87 162.95 204 124.96 237.39 TRUE FALSE 146.908767 233.8158569 203.0087948 177.8704023 137.3004538 228.2501224 193.8689118 186.6689267 136.9629663 189.0097877 0.777254812 1.237056873 1.074064985 0.941064505 0.726419809 1.207610067 1.02570832 0.987615133 0.724634253 1 7.562317135 -8.557869041 24.04345351 0.860252409 1.005967094 0.095741947 0.164827008 271.2016542 186348.591 0.109789442 0.041497002 2.77E-09 8.557869041 0.145714685 MT(ph)NSCLK ddPTM_K562_Paclitaxel_30min_R1 1 MTNSCLK 7 0 P0C7P3-2;P0C7P3 P0C7P3-2 SLFN14 Schlafen family member 14 1 MT(1)NSCLK 107.74 0.013068 3848100 0 0 154.92 0 0 0 65.054 0 56.981 0 TRUE FALSE 0 0 115.80853 0 0 0 77.3976569 0 62.45427965 0 0 MT(ph)SEKGPS(ph)T(ph)GDPTLRRR ddPTM_K562_Paclitaxel_30min_R1 1 MTSEKGPSTGDPTLRRR 17 3 P41238 P41238 APOBEC1 C->U-editing enzyme APOBEC-1 3 MT(0.865)S(0.135)EKGPS(0.999)T(0.999)GDPT(0.002)LRRR 64.675 0.021836 6607100 705.04 447.24 902.28 814.43 838.46 785.85 581.58 536.76 339.4 645.46 TRUE FALSE 714.9127352 496.0711757 674.4882547 762.1961051 952.6724472 925.2094636 691.9317689 491.1588876 372.0008865 513.9148977 1.391111132 0.965278839 1.312451259 1.483117357 1.853755265 1.800316488 1.346393677 0.955720276 0.723856981 1 9.005385664 -8.253825928 3.595827956 0.861131546 1.462921481 0.531671521 0.242028782 0.21168001 5.98797089 0.158382775 0.077137808 5.57E-09 8.253825928 0.601789935 MT(ph)SNFPVDLSDY(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 MTSNFPVDLSDYPK 14 0 P04114 P04114 APOB Apolipoprotein B-100;Apolipoprotein B-48 2 MT(0.987)S(0.428)NFPVDLS(0.04)DY(0.544)PK 105.99 0.011086 12836000 1455.8 1344.9 1708.1 1636.6 1348 1557.1 1326.2 1690.6 1370.5 1784.7 TRUE FALSE 1476.185692 1491.74073 1276.869029 1531.635801 1531.620422 1833.229822 1577.839527 1546.972978 1502.142649 1420.97716 1.038852511 1.049799231 0.898585188 1.077875031 1.077864208 1.290119133 1.110390491 1.088668432 1.057119488 1 10.47266765 -6.487417408 8.817704496 1.114542934 0.998865533 0.264479208 0.079704648 0.480289438 113.2766688 0.023225938 0.033926959 3.26E-07 6.487417408 -0.115677401 MT(ph)YT(ph)EQASKR ddPTM_K562_Paclitaxel_30min_R1 1 MTYTEQASKR 10 1 Q9C0G6-3;Q9C0G6-4;Q9C0G6 Q9C0G6-3 DNAH6 "Dynein heavy chain 6, axonemal" 2 MT(0.685)Y(0.529)T(0.786)EQASKR 78.939 0.016571 13849000 169.63 314.32 423.51 300.91 267.55 238.22 237.66 176.04 313.38 347.57 TRUE FALSE 172.0053434 348.6385206 316.5896626 281.6109794 303.9948397 280.4649722 282.7547443 161.0843032 343.4815492 276.7350432 0.621552447 1.259827872 1.144017248 1.017619511 1.09850504 1.01347834 1.02175258 0.582088561 1.241192822 1 8.112361535 -8.029664611 24.98530177 0.907368564 1.042508503 0.02064706 0.215675649 1921.910876 1618739.516 0.095732033 0.055378081 9.34E-09 8.029664611 0.135139939 MTDQEAIQDLWQWR ddPTM_K562_Paclitaxel_30min_R1 4 MTDQEAIQDLWQWR 14 0 P06748-2;P06748 P06748-2 NPM1 Nucleophosmin 0 ;;; 283.35 2.33E-126 339880000 6474.7 7122.6 7084.2 7089.1 5238.7 5376.4 8843.1 10579.1 7745 11505 FALSE TRUE 6565.365776 7900.269555 5295.706094 6634.436856 5952.299632 6329.829052 10521.03206 9680.339422 8488.941856 9160.274685 0.716721496 0.86244898 0.578116517 0.724261781 0.649794885 0.691008651 1.148549844 1.056773924 0.926712588 1 13.16117515 -7.750925246 24.99971613 1.037740248 0.703712628 0.785529838 0.084275857 92.73584823 220500.6584 0.032820686 0.025148641 1.77E-08 7.750925246 -0.33402762 MTEEEVEMLVAGHEDS(ph)NGCINYEELVR ddPTM_K562_Paclitaxel_30min_R1 4 MTEEEVEMLVAGHEDSNGCINYEELVR 27 0 F8W180;F8VXL3;F8VZU9;P60660-2;G8JLA2 F8W180 MYL6 1 MTEEEVEMLVAGHEDS(0.996)NGCINY(0.004)EELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR;MTEEEVEMLVAGHEDS(0.997)NGCINY(0.003)EELVR;MTEEEVEMLVAGHEDS(1)NGCINYEELVR 145.26 9.56E-25 111026000 5221.98 4835.29 5829.98 5183.66 4327.08 4454.52 4884.12 5740.5 5159.29 6853.3 TRUE FALSE 5295.103831 5363.223314 4358.129445 4851.203249 4916.501554 5244.466577 5810.856273 5252.808694 5654.862857 5456.593698 0.970404638 0.982888522 0.798690481 0.889053413 0.901020275 0.961124626 1.064923759 0.96265344 1.036335701 1 12.41378491 -7.484466487 4.109704177 1.013418895 0.906276715 0.476980029 0.052898148 0.20775755 7.64128709 0.021041845 0.017530631 3.28E-08 7.484466487 -0.107142179 MTIS(ph)QQEFGR ddPTM_K562_Paclitaxel_30min_R1 1 MTISQQEFGR 10 0 H0Y3Y9;Q5VWC4;P55036 H0Y3Y9 PSMD4 26S proteasome non-ATPase regulatory subunit 4 1 MT(0.051)IS(0.949)QQEFGR 130.69 0.0008425 54811000 897.98 826.59 766.06 696.96 635.37 657.14 788.08 908.58 637.43 1166.9 TRUE FALSE 910.5544905 916.8398915 572.6586785 652.2601051 721.9181509 773.6745523 937.6140659 831.3904578 698.6579996 929.0851395 0.980054951 0.986820101 0.616368354 0.702045569 0.777020448 0.832727292 1.009179919 0.894848515 0.751984904 1 9.859666998 -7.540406827 24.6570385 0.907485443 0.805095485 0.130152718 0.124056799 482.4144101 678613.3686 0.051232058 0.039693136 2.88E-08 7.540406827 -0.102389957 MTNMS(ph)WSFLT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 MTNMSWSFLTR 11 0 Q5T442 Q5T442 GJC2 Gap junction gamma-2 protein 2 MT(0.147)NMS(0.786)WS(0.071)FLT(0.996)R 51.463 0.02938 23558000 0 177.71 228.25 170.73 117.96 50.668 144.41 115.96 62.076 0 TRUE FALSE 0 197.1129788 170.6254645 159.780142 134.0281491 59.65325839 171.8110436 106.1084742 68.03867716 0 0 MTS(ph)LY(ph)PEKT(ph)QR ddPTM_K562_Paclitaxel_30min_R1 1 MTSLYPEKTQR 11 1 A0A087X135 A0A087X135 TTLL9 3 MT(0.08)S(0.932)LY(0.988)PEKT(1)QR 42.388 0.028897 89106000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 MTSKPCYY(ph)T(ph)QELTK ddPTM_K562_Paclitaxel_30min_R1 1 MTSKPCYYTQELTK 14 1 Q68DL7 Q68DL7 C18orf63 Uncharacterized protein C18orf63 2 MTSKPCY(0.009)Y(0.949)T(0.959)QELT(0.084)K 59.225 0.026817 0 682.95 681.82 755.71 960.93 893.97 1030.6 889.75 962.84 791.52 658.47 TRUE FALSE 692.5134071 756.2634134 564.921664 899.3002508 1015.743849 1213.36244 1058.575418 881.0407321 867.5490326 524.2734526 1.320901151 1.442498013 1.077532462 1.715326699 1.9374314 2.314369407 2.019128401 1.680498465 1.654764376 1 9.034175684 -6.416766626 5.295004048 1.840548275 1.300166007 0.290111827 0.332317662 0.254482815 10.43830028 0.094262681 0.140675031 3.83E-07 6.416766626 -0.540382268 MVCS(ph)PVTVR ddPTM_K562_Paclitaxel_30min_R1 4 MVCSPVTVR 9 0 Q96HA1;Q96HA1-2;Q96HA1-3;A8MY32;A8CG34-2;A8CG34 Q96HA1;A8CG34-2 POM121;POM121C Nuclear envelope pore membrane protein POM 121;Nuclear envelope pore membrane protein POM 121C 1 MVCS(0.987)PVT(0.013)VR;MVCS(0.995)PVT(0.005)VR;MVCS(0.999)PVT(0.001)VR;MVCS(0.992)PVT(0.008)VR 110.84 0.0059375 330080000 9444.3 8899.3 11734.3 10888.8 9537.8 8615.2 7810.4 9466.6 8889.9 9087.5 TRUE FALSE 9576.549338 9870.955669 8771.830837 10190.4411 10837.00984 10142.98476 9292.382627 8662.353241 9743.814616 7235.462512 1.323557315 1.364246674 1.212338648 1.40840217 1.497763249 1.401843315 1.284283156 1.19720795 1.346674743 1 12.82086953 -9.698010589 0.610057279 0.988449186 1.360513788 0.601326274 0.08387497 1.843162665 1.021463259 0.14841326 0.037979751 2.00E-10 9.698010589 0.372064602 MVEPENAVTITPLRPEDDYS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 MVEPENAVTITPLRPEDDYSPR 22 1 A0A0G2JMS7;A0A0G2JNZ2;A0A0G2JPP5;A0A669KB89;Q14160-2;Q14160;Q14160-3;A0A669KAX5;H0YDF9 A0A0G2JMS7 SCRIB Protein scribble homolog 1 MVEPENAVTITPLRPEDDY(0.437)S(0.563)PR;MVEPENAVTITPLRPEDDY(0.012)S(0.988)PR;MVEPENAVTIT(0.001)PLRPEDDY(0.025)S(0.973)PR;MVEPENAVT(0.018)IT(0.014)PLRPEDDY(0.262)S(0.706)PR 113.23 1.93E-05 651302000 6004.8 5939.85 6481.04 6528.5 5343.24 5643.7 5955 7290.6 4880.51 6864.8 TRUE FALSE 6088.885726 6588.38291 4844.821296 6109.79123 6071.07975 6644.530954 7084.930163 6671.218024 5349.304792 5465.749992 1.114007361 1.205394122 0.886396433 1.11783218 1.110749624 1.215666828 1.29624117 1.220549428 0.978695476 1 12.41620376 MVEPENAVTITPLRPEDDYS(ph)PRER ddPTM_K562_Paclitaxel_30min_R1 2 MVEPENAVTITPLRPEDDYSPRER 24 2 A0A0G2JMS7;A0A0G2JNZ2;A0A0G2JPP5;A0A669KB89;Q14160-2;Q14160;Q14160-3;A0A669KAX5;H0YDF9 A0A0G2JMS7 SCRIB Protein scribble homolog 1 MVEPENAVTITPLRPEDDY(0.385)S(0.615)PRER;MVEPENAVTITPLRPEDDY(0.443)S(0.557)PRER 81.017 0.00013081 237660000 5576 4861.7 6380.7 5710.6 5000.2 5320 5722.4 6182.1 6426.1 6280.9 TRUE FALSE 5654.081203 5392.516847 4769.81337 5344.347676 5681.311894 6263.427303 6808.195527 5656.892018 7043.355618 5000.849132 1.130624231 1.078320242 0.953800693 1.068688044 1.136069444 1.252472758 1.361407902 1.131186298 1.408431934 1 12.28795737 -7.025797335 2.727647291 1.246608626 1.052150555 0.332958029 0.11422617 0.285263136 4.258512565 0.037751934 0.040410589 9.42E-08 7.025797335 -0.194458071 MVIQGPS(ph)SPQGEAMVTDVLEDQKEGR ddPTM_K562_Paclitaxel_30min_R1 2 MVIQGPSSPQGEAMVTDVLEDQKEGR 26 1 A6NNK5;Q12888;Q12888-3;Q12888-2 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 MVIQGPS(0.5)S(0.5)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.5)S(0.5)PQGEAMVTDVLEDQKEGR 90.06 0.00014504 76257000 2465.5 2341.15 4041.4 2803.8 2311.78 1977.46 2086.63 2518.8 2598.5 3852.6 TRUE FALSE 2500.024607 2596.764674 3021.098587 2623.976817 2626.683575 2328.134766 2482.55715 2304.812218 2848.097535 3067.438005 0.815020418 0.84655816 0.98489312 0.855429454 0.85631187 0.758983478 0.809325941 0.751380212 0.928493919 1 11.58281847 -5.303213277 5.534339941 0.856142588 0.814504624 0.022899497 0.080726168 0.792019292 63.53818028 0.020422767 0.095442367 4.97E-06 5.303213277 -0.041637964 MVIQGPSS(ph)PQGEAMVTDVLEDQKEGR ddPTM_K562_Paclitaxel_30min_R1 3 MVIQGPSSPQGEAMVTDVLEDQKEGR 26 1 A6NNK5;Q12888;Q12888-3;Q12888-2 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 MVIQGPS(0.243)S(0.757)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.233)S(0.767)PQGEAMVTDVLEDQKEGR;MVIQGPS(0.239)S(0.761)PQGEAMVTDVLEDQKEGR 124.21 1.24E-10 469309000 5675.2 5108.1 9319.3 6788.4 4780.8 4226.7 4952.6 6056.5 6648.5 7817.3 TRUE FALSE 5754.670309 5665.819632 6966.527455 6353.022408 5432.0259 4976.245899 5892.329996 5541.962522 7287.118131 6224.129969 0.924574252 0.910299056 1.119277311 1.020708507 0.87273658 0.799508674 0.946691349 0.89039955 1.17078502 1 12.60365647 -8.752214261 24.99976577 1.085392531 0.937393572 0.307170229 0.089996101 227.9042394 617624.6437 0.067325306 0.024673468 1.77E-09 8.752214261 -0.147998959 MVNPGSSSQPPPVT(ph)AGSLSWKR ddPTM_K562_Paclitaxel_30min_R1 1 MVNPGSSSQPPPVTAGSLSWKR 22 1 P61968 P61968 LMO4 LIM domain transcription factor LMO4 1 MVNPGS(0.002)S(0.002)S(0.002)QPPPVT(0.979)AGS(0.007)LS(0.007)WKR 42.705 0.026634 54241000 1781 1966.2 1551.2 1984.2 1504.5 1877.8 1945.5 1486.9 2290.8 1701.6 TRUE FALSE 1805.939495 2180.876365 1159.580375 1856.942293 1709.438371 2210.801464 2314.648469 1360.578564 2510.841576 1354.812986 1.33298065 1.609725023 0.855897004 1.370626287 1.261752278 1.631813016 1.708463451 1.004255627 1.853275398 1 10.403878 -6.511436835 23.42230886 1.425254228 1.269338137 0.039094208 0.313326852 840.0743914 1719685.282 0.087482736 0.121687234 3.08E-07 6.511436835 -0.155916091 MVQLS(ph)PPALAAPAAPGR ddPTM_K562_Paclitaxel_30min_R1 5 MVQLSPPALAAPAAPGR 17 0 P17542-2;P17542 P17542-2 TAL1 T-cell acute lymphocytic leukemia protein 1 1 MVQLS(1)PPALAAPAAPGR;MVQLS(1)PPALAAPAAPGR;MVQLS(1)PPALAAPAAPGR;MVQLS(1)PPALAAPAAPGR;MVQLS(1)PPALAAPAAPGR 187.5 8.53E-11 1487364600 10679.35 10315 12102.4 11329.1 9605.1 9464.63 10128.1 11617.43 10385.16 11294.5 TRUE FALSE 10828.89385 11441.22658 9046.999439 10602.50223 10913.47724 11143.04924 12049.8541 10630.45681 11382.70102 8992.6747 1.204190545 1.272282937 1.006040999 1.179015431 1.213596355 1.239125134 1.339963304 1.182124025 1.2657748 1 13.13453457 MVS(ph)EEMEEQVHSIR ddPTM_K562_Paclitaxel_30min_R1 1 MVSEEMEEQVHSIR 14 0 Q5JR89;Q99661-2;Q99661 Q5JR89 KIF2C Kinesin-like protein KIF2C 1 MVS(1)EEMEEQVHSIR 89.913 0.010901 3718600 783.97 581.83 978.37 786.68 689.96 751.04 644.31 800.31 825.25 764.03 TRUE FALSE 794.9479988 645.356167 731.3683932 736.2258658 783.9442331 884.2263989 766.564459 732.3186701 904.5189498 608.3202666 1.306791903 1.06088224 1.202275238 1.210260296 1.288703132 1.453554069 1.260133027 1.20383737 1.486912404 1 9.248687259 -6.683359657 3.416393141 1.300387322 1.180990028 0.079364078 0.13790425 0.485496956 11.26483947 0.040785978 0.052908476 2.07E-07 6.683359657 -0.119397294 MVSQS(ph)QPGS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 MVSQSQPGSR 10 0 E3W994;J3KR49;O75122;E7ERI8;E7EW49;O75122-3 E3W994 CLASP2 CLIP-associating protein 2 2 MVS(0.061)QS(0.939)QPGS(1)R;MVS(0.026)QS(0.974)QPGS(1)R 114.87 4.83E-05 0 8680.4 8569.6 8788.8 7949.2 6827.4 7299 8656.7 9762.3 7339 12796.5 TRUE FALSE 8801.952381 9505.257909 6569.958741 7439.373891 7757.407469 8593.375167 10299.26363 8932.931681 8043.943742 10188.56628 0.863904905 0.932933806 0.644836434 0.730168867 0.76138362 0.843433211 1.010864861 0.876760423 0.789506936 1 13.31466343 -7.525766215 24.78436038 0.911603953 0.785621933 0.313476094 0.092249905 112.5336877 965898.2881 0.037164309 0.028951912 2.98E-08 7.525766215 -0.12598202 MVSQS(ph)QPGSR ddPTM_K562_Paclitaxel_30min_R1 1 MVSQSQPGSR 10 0 E3W994;J3KR49;O75122;E7ERI8;E7EW49;O75122-3 E3W994 CLASP2 CLIP-associating protein 2 1 MVS(0.131)QS(0.869)QPGSR 101.56 0.008971 19745000 1524.8 1439 1460.2 1337.9 1263.2 1259.2 1317.9 1624.2 1370.6 1532.7 TRUE FALSE 1546.151904 1596.114886 1091.55445 1252.093082 1435.269226 1482.50144 1567.964645 1486.214072 1502.252254 1220.334899 1.266989829 1.307931854 0.894471224 1.026024154 1.17612733 1.214831635 1.284864218 1.217873941 1.231016384 1 10.25306141 -6.989125104 24.18886931 1.207747553 1.118175345 0.046431481 0.129030559 396.5251247 881976.0062 0.042257353 0.047867726 1.03E-07 6.989125104 -0.089572208 MVSQSQPGS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 MVSQSQPGSR 10 0 E3W994;J3KR49;O75122;E7ERI8;E7EW49;O75122-3 E3W994 CLASP2 CLIP-associating protein 2 1 MVSQSQPGS(1)R 97.163 0.011708 15230000 784.63 871.38 735.9 786.36 706 642.01 814.68 970.36 655.99 1186.1 TRUE FALSE 795.6172408 966.5202152 550.1129435 735.9263892 802.1691527 755.8614592 969.2612771 887.9218612 719.0007705 944.3721689 0.842482728 1.023452667 0.582517107 0.779275812 0.849420577 0.800385149 1.02635519 0.940224511 0.761353198 1 9.883211715 -7.726578553 24.97617171 0.927002033 0.812148492 0.190937597 0.119884336 326.0986684 233634.251 0.046902445 0.036328863 1.88E-08 7.726578553 -0.114853542 MVSQSQPGS(ph)RSGS(ph)PGR ddPTM_K562_Paclitaxel_30min_R1 1 MVSQSQPGSRSGSPGR 16 1 E3W994;J3KR49;O75122;E7ERI8;E7EW49;O75122-3 E3W994 CLASP2 CLIP-associating protein 2 2 MVSQS(0.003)QPGS(0.903)RS(0.117)GS(0.977)PGR 138.77 7.20E-08 8602700 4642.1 4343.1 4327 4145.9 3534.5 3645.6 3522.4 4832.8 5462 4641.6 TRUE FALSE 4707.103722 4817.294345 3234.595334 3880.00053 4015.95874 4292.095973 4190.757012 4422.223475 5986.649505 3695.639372 1.273691302 1.303507691 0.875246475 1.049886133 1.086674953 1.161394698 1.133973472 1.196605791 1.619922536 1 11.85160827 -8.534934802 24.98937877 1.342728939 1.123586168 0.137829373 0.178663605 370.0971079 767107.454 0.116840796 0.044229732 2.92E-09 8.534934802 -0.219142771 MVSWMISR ddPTM_K562_Paclitaxel_30min_R1 1 MVSWMISR 8 0 Q6NUK4-2;Q6NUK4 Q6NUK4-2 REEP3 Receptor expression-enhancing protein 3 0 64.567 0.024524 7650400 2584.8 2575.8 3254.3 2759 2918.6 2860.4 2692.2 3156.3 2383.1 3477.4 FALSE TRUE 2620.995175 2857.034555 2432.711716 2582.050089 3316.162732 3367.651778 3203.030896 2888.152614 2612.007403 2768.703971 0.946650564 1.031903224 0.878646378 0.932584384 1.197731056 1.216327861 1.15687012 1.043142439 0.943404362 1 11.43499509 -6.742530942 24.98848671 1.104438401 0.948564462 0.39467279 0.087556458 258.8438688 342074.2489 0.028033601 0.036130091 1.81E-07 6.742530942 -0.155873939 MVTAVAS(ph)ALSSR ddPTM_K562_Paclitaxel_30min_R1 1 MVTAVASALSSR 12 0 A0A2R8Y7X9;P69891 A0A2R8Y7X9 HBG1 Hemoglobin subunit gamma-1 1 MVT(0.004)AVAS(0.996)ALSSR 87.719 0.021355 9162800 613.96 467.79 619.78 673.25 640.44 483.24 592.25 693.3 455.84 660.95 TRUE FALSE 622.5573342 518.8648942 463.3088737 630.0707584 727.6787707 568.935829 704.6263457 634.3998376 499.6254687 526.2480272 1.183011246 0.985970241 0.88040021 1.19728859 1.382767693 1.081117267 1.338962446 1.205514899 0.949410626 1 9.03959911 -4.921431373 19.99640707 1.12703907 3.267920337 0.010595643 0.158723924 2856.386213 811962.3481 0.040554519 32054.73823 1.20E-05 4.921431373 2.140881266 MVTGVAS(ph)ALSSR ddPTM_K562_Paclitaxel_30min_R1 1 MVTGVASALSSR 12 0 E9PBW4;P69892 E9PBW4 HBG2 Hemoglobin subunit gamma-2 1 MVT(0.006)GVAS(0.994)ALSSR 84.892 0.02527 8398000 2499.4 2292 3823 2767.5 2535.7 2485.4 1920.5 2912.6 2504.5 3323.7 TRUE FALSE 2534.399311 2542.248311 2857.836368 2590.004937 2881.10527 2926.150793 2284.904849 2665.15645 2745.068415 2646.328116 0.957704109 0.960670106 1.07992518 0.978716479 1.088718082 1.105739978 0.863424621 1.00711489 1.037312191 1 11.36977624 -5.579659166 24.96666365 1.018905565 0.958445077 0.121826975 0.065393177 156.851145 68967.31682 0.017114795 0.045281511 2.63E-06 5.579659166 -0.060460488 MWSIS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 MWSISR 6 0 P50443 P50443 SLC26A2 Sulfate transporter 1 MWS(0.003)IS(0.997)R 45.335 0.030582 4047400 454.58 348.3 436.49 490.08 388.76 390.7 429.88 417.84 466.15 590.97 TRUE FALSE 460.9455225 386.3285719 326.2927011 458.6484623 441.7156938 459.9851593 511.4474859 382.3418839 510.9257903 470.5299896 0.979630486 0.821049838 0.69345782 0.974748629 0.938762042 0.977589462 1.086960443 0.812577078 1.085851703 1 8.878142867 -6.384171967 13.0003157 0.977079583 0.830366756 0.3363369 0.096990218 0.809549681 82.00881563 0.026687559 0.039584992 4.13E-07 6.384171967 -0.146712828 MY(ph)DKIFS(ph)QANTPLK ddPTM_K562_Paclitaxel_30min_R1 1 MYDKIFSQANTPLK 14 1 A0A494C046;E7ERD7;A0A494C0B6;A0A499FJL5;C9J8C7;A0A494C116;A0A494C0J9;A0A494BZW8;Q9UKU0-5;Q9UKU0-7;Q9UKU0;Q9UKU0-3;Q9UKU0-9;Q9UKU0-2;Q9UKU0-6;Q9UKU0-8;Q9UKU0-1 A0A494C046 ACSL6 Long-chain-fatty-acid--CoA ligase 6 2 MY(1)DKIFS(1)QANTPLK 86.803 0.024663 0 517.34 488.65 685.04 654.69 401.35 509.73 450.87 574.31 564.03 690.16 TRUE FALSE 524.5843561 542.0024595 512.0931795 612.7011137 456.0206649 600.1234585 536.4202288 525.5187808 618.2076017 549.5050132 0.9546489 0.986346706 0.931917211 1.115005503 0.82987535 1.09211644 0.976188053 0.956349384 1.125026318 1 9.101988833 -8.744243239 24.99844648 1.062513218 0.981959726 0.142868396 0.080461001 388.7033063 565072.3444 0.05047003 0.018974717 1.80E-09 8.744243239 -0.080553492 MY(ph)ESEGKVK ddPTM_K562_Paclitaxel_30min_R1 1 MYESEGKVK 9 1 H0YN48;F5H2B9;H0YNH8;Q9BZF9-2;Q9BZF9 H0YN48 UACA Uveal autoantigen with coiled-coil domains and ankyrin repeats 1 MY(1)ESEGKVK 88.37 0.011741 14585000 1006.9 1071.5 1002 1334.9 1008.6 1580.7 1607.2 1261.4 834.18 1288.9 TRUE FALSE 1020.999707 1188.489994 749.0327074 1249.285489 1145.988396 1861.014951 1912.15781 1154.236197 914.3067162 1026.221473 0.994911658 1.158122321 0.729893817 1.217364402 1.116706702 1.813463274 1.863299357 1.124743759 0.890944831 1 10.0031264 -6.774037818 2.492625685 1.376917309 0.991741867 0.164211243 0.320460139 0.475904013 6.059561261 0.113290763 0.142343189 1.68E-07 6.774037818 -0.385175442 MY(ph)NPWQVGASLAPARAGPRPFPT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 MYNPWQVGASLAPARAGPRPFPTPR 25 2 P0C879 P0C879 Putative uncharacterized protein FLJ43185 2 MY(0.977)NPWQVGAS(0.023)LAPARAGPRPFPT(1)PR 42.973 0.026696 21462000 1220.2 1032.4 1403.2 1351.4 1161.9 911.23 1177.3 1296.7 1061.8 1058.4 TRUE FALSE 1237.286565 1145.120923 1048.944805 1264.727253 1320.170451 1072.823846 1400.686529 1186.537241 1163.790634 842.697499 1.468245208 1.358875426 1.244746551 1.500808124 1.566600652 1.273082983 1.662146299 1.40802274 1.381030127 1 9.718871033 -9.328253766 2.437209952 1.0000749 1.434426947 0.540635655 0.119671269 1.759449026 12.04537553 0.115595262 0.031321011 4.70E-10 9.328253766 0.434352047 MY(ph)S(ph)TVS(ph)GSEKNS(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 MYSTVSGSEKNSK 13 1 Q01638-4 Q01638-4 4 MY(0.915)S(0.582)T(0.582)VS(0.921)GS(0.18)EKNS(0.82)K 48.568 0.030896 70693000 293.11 314.93 558.92 260.52 388.09 214.22 223.28 451.49 396.62 419.34 TRUE FALSE 297.2144443 349.3151224 417.8137334 243.8114132 440.9544284 252.2089092 265.6462144 413.1331064 434.7171231 333.8782778 0.890188024 1.046234947 1.251395377 0.730240418 1.320704154 0.755391788 0.795637908 1.237376415 1.302022779 1 8.383178424 -8.290079301 24.56387128 1.202274762 0.979743998 0.183732079 0.200266705 973.9312425 835314.4449 0.107062874 0.051447796 5.13E-09 8.290079301 -0.222530764 MYAFYS(ph)LLIYIFYS(ph)LFRR ddPTM_K562_Paclitaxel_30min_R1 2 MYAFYSLLIYIFYSLFRR 18 1 A0A2R8Y870;A0A2R8YEU8;Q96AC6 A0A2R8Y870 KIFC2 Kinesin-like protein KIFC2 2 MY(0.004)AFY(0.095)S(0.874)LLIY(0.032)IFY(0.462)S(0.534)LFRR;MYAFY(0.006)S(0.897)LLIY(0.1)IFY(0.462)S(0.535)LFRR 53.169 0.022114 14035200 3475.2 4322.2 2775.26 3560 3536.2 3452.2 4659.2 4752.2 3563.4 4548.7 TRUE FALSE 3523.863522 4794.112413 2074.611289 3331.677534 4017.890308 4064.399199 5543.258877 4348.470948 3905.680492 3621.672443 0.972993438 1.323728882 0.572832392 0.919927902 1.109401905 1.122243732 1.530579853 1.200680353 1.078419032 1 11.82244035 -7.050746399 2.599464298 1.221005095 0.950796904 0.208171733 0.214347723 0.431754121 5.792430706 0.077898098 0.082186782 8.90E-08 7.050746399 -0.270208191 MYPESTTGS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 1 MYPESTTGSPAR 12 0 A0A590UJ15;A0A590UJK5;A0A5F9UN28;A0A590UJJ4;K7EKU4;K7EIR5;A0A590UJU4;Q5TG84;A0A590UJU1;A0A590UJY1;A0A590UK89;Q5TG78;A0A590UJX9;A0A590UJV4;A0A590UJ72;A0A590UJI8;Q13303-2;Q13303;Q13303-5 A0A590UJ15 KCNAB2 Voltage-gated potassium channel subunit beta-2 1 MYPESTT(0.002)GS(0.997)PAR 122.52 0.002025 13120000 1664.7 1307.1 1308.1 1402.4 1263.9 1117 1268.4 1193 1030 1602.2 TRUE FALSE 1688.010936 1449.813598 977.8539766 1312.456341 1436.064578 1315.084267 1509.072279 1091.647204 1128.936102 1275.670761 1.32323401 1.136510801 0.766541028 1.028836265 1.125732926 1.0308963 1.182963759 0.85574369 0.884974507 1 10.31704031 -5.523447285 24.99454863 0.991809662 1.276553294 0.44212334 0.118445722 15.5144628 682105.521 0.031622868 0.085370463 3.00E-06 5.523447285 0.284743632 MYS(ph)T(ph)Y(ph)IK ddPTM_K562_Paclitaxel_30min_R1 1 MYSTYIK 7 0 F8VY01;Q6ZV73-2;Q6ZV73 F8VY01 FGD6 "FYVE, RhoGEF and PH domain-containing protein 6" 3 MY(0.01)S(0.99)T(1)Y(1)IK 44.98 0.029622 318160000 2066.2 1898.3 2004.8 2002.2 1496.2 1589.9 2269.8 2539.2 2139.5 2604.9 TRUE FALSE 2095.133175 2105.562814 1498.663445 1873.787854 1700.007771 1871.846442 2700.482701 2323.479111 2345.008535 2074.01995 1.010179856 1.015208563 0.722588732 0.903457006 0.819667993 0.902520943 1.302052423 1.120278091 1.13065862 1 11.01821406 -7.689469982 9.648518674 1.148003163 0.889478285 0.561006058 0.104943011 0.250094439 31.44111358 0.040571828 0.031376623 2.04E-08 7.689469982 -0.258524879 NADSELMPPPPERGDPPRLS(ph)PDPVAGSAVSQELR ddPTM_K562_Paclitaxel_30min_R1 3 NADSELMPPPPERGDPPRLSPDPVAGSAVSQELR 34 2 E9PMR3;E9PMG4;Q9BUR4 E9PMR3 WRAP53 Telomerase Cajal body protein 1 1 NADS(0.001)ELMPPPPERGDPPRLS(0.816)PDPVAGS(0.083)AVS(0.1)QELR;NADS(0.001)ELMPPPPERGDPPRLS(0.854)PDPVAGS(0.1)AVS(0.045)QELR;NADSELMPPPPERGDPPRLS(0.988)PDPVAGS(0.01)AVS(0.002)QELR 55.413 0.00078075 297222000 5828.2 4855.9 7158.8 5867.2 5247.65 4564.5 4840.7 6545.6 4755.8 6715 TRUE FALSE 5909.812782 5386.083584 5351.472401 5490.904053 5962.468773 5373.949986 5759.197555 5989.510424 5212.615839 5346.479314 1.105365313 1.007407542 1.000933902 1.027013055 1.115214036 1.005138086 1.077194396 1.120271878 0.974962313 1 12.38437347 -5.238776181 22.90801814 1.041567846 1.105365532 0.147133365 0.048382367 4182.577184 4227553.871 0.011970672 0.552893092 5.77E-06 5.238776181 0.063797686 NAEAVLQS(ph)PGLSGK ddPTM_K562_Paclitaxel_30min_R1 2 NAEAVLQSPGLSGK 14 0 Q13045-2;Q13045-3;Q13045 Q13045-2 FLII Protein flightless-1 homolog 1 NAEAVLQS(0.987)PGLS(0.013)GK;NAEAVLQS(1)PGLSGK 194.32 2.39E-07 116660000 11013.9 9448.3 18018.5 11199.1 8302 7294 7869.2 11130.9 10461.3 14102.9 TRUE FALSE 11168.12858 10479.89735 13469.50683 10480.83985 9432.872954 8587.488487 9362.33962 10185.26057 11466.15461 11228.72124 0.994603779 0.933311739 1.199558395 0.933395676 0.840066536 0.764778847 0.833785025 0.907072172 1.021145183 1 13.45490602 -6.510595084 24.16426059 0.880892778 1.037390641 0.319832894 0.095327073 429.6514518 845205.3151 0.028247933 0.039539557 3.09E-07 6.510595084 0.156497863 NAEEES(ph)ESEAEEGD ddPTM_K562_Paclitaxel_30min_R1 2 NAEEESESEAEEGD 14 0 H0Y503;Q7L1Q6-2;Q7L1Q6;Q7L1Q6-4;Q7L1Q6-3 H0Y503 BZW1 Basic leucine zipper and W2 domain-containing protein 1 1 NAEEES(0.999)ES(0.001)EAEEGD;NAEEES(0.744)ES(0.256)EAEEGD 231.07 6.56E-35 83148000 6686.5 6311.4 10158 8769.4 6316.6 6771.7 5733.9 7208 5224.1 7718.1 TRUE FALSE 6780.13163 7000.499996 7593.487267 8206.969934 7177.027861 7972.565916 6821.877592 6595.635409 5725.898147 6145.146983 1.103331075 1.139191628 1.235688469 1.335520526 1.167918014 1.297375952 1.110124397 1.073307998 0.931775621 1 12.5852318 -8.277083231 1.933907398 0.973953528 1.213157741 0.64367925 0.071274792 0.231492132 1.604739468 0.054771862 0.021798386 5.28E-09 8.277083231 0.239204212 NALPPVLTTVNGQS(ph)PPEHSAPAK ddPTM_K562_Paclitaxel_30min_R1 1 NALPPVLTTVNGQSPPEHSAPAK 23 0 Q6PKG0;A0A0B4J210;H0YBM7 Q6PKG0 LARP1 La-related protein 1 1 NALPPVLT(0.001)T(0.005)VNGQS(0.994)PPEHSAPAK 97.295 0.00012843 365710000 3389.4 2574.3 5187.2 3598.3 2781.9 2289.8 2300.7 3338.9 2760.3 3869.4 TRUE FALSE 3436.862057 2855.37078 3877.627206 3367.521143 3160.841878 2695.86388 2737.245815 3055.239604 3025.439148 3080.814156 1.115569419 0.926823442 1.258637168 1.093062085 1.02597616 0.875049173 0.888481316 0.991698768 0.982025853 1 11.58909594 -6.987670654 3.993736213 0.943138781 1.09611693 0.417292747 0.083936043 0.220077641 8.021168939 0.028115243 0.030719304 1.03E-07 6.987670654 0.15297815 NAPAAVDEGSIS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 NAPAAVDEGSISPR 14 0 A0A494C0S2;A0A090HNM7;A0A1W2PS85;R4GMW8;P28715 A0A494C0S2 ERCC5-201;BIVM-ERCC5;ERCC5 DNA repair protein complementing XP-G cells 1 NAPAAVDEGS(0.001)IS(0.999)PR;NAPAAVDEGSIS(1)PR 206.13 8.50E-13 311800000 3052.8 2740 4113.3 3443.2 2661.8 2579.8 2426.5 3404.7 3073.9 3653.8 TRUE FALSE 3095.548619 3039.162466 3074.846542 3222.368563 3024.382225 3037.291308 2886.915708 3115.449484 3369.16183 2909.153554 1.064071924 1.044689601 1.056955738 1.107665341 1.039609002 1.044046404 0.992355905 1.070912699 1.158124439 1 11.50638373 -8.52220737 24.99999969 1.090880994 1.050157728 0.058431455 0.044550594 54.52859868 2030954.163 0.028362507 0.010985968 3.00E-09 8.52220737 -0.040723266 NAS(ph)IHTLLDALER ddPTM_K562_Paclitaxel_30min_R1 1 NASIHTLLDALER 13 0 F8U8C0;O00220 F8U8C0 TNFRSF10A Tumor necrosis factor receptor superfamily member 10A 1 NAS(0.919)IHT(0.081)LLDALER 94.45 0.012614 1771700 297.06 264.72 253.13 272.47 191.46 179.41 148.46 520.04 235.82 413.48 TRUE FALSE 301.2197565 293.6230248 189.2242008 254.9949937 217.5400934 211.2258445 176.62951 475.859356 258.4715647 329.212549 0.914970457 0.891894995 0.574778214 0.77456037 0.660789189 0.641609334 0.536521194 1.445447196 0.785120632 1 8.36287552 -8.242809937 24.94168157 1.086463014 0.712653977 0.43347277 0.190214183 676.8742028 906222.4678 0.086763931 0.04997761 5.72E-09 8.242809937 -0.373809037 NAS(ph)VPNLR ddPTM_K562_Paclitaxel_30min_R1 1 NASVPNLR 8 0 Q9H019-3;Q9H019;E9PRW1;E9PSD6;C9JF50;E9PPF9;E9PLU1;E9PRK5;E9PLD2;Q9H019-2;E9PNJ0;E9PPQ0 Q9H019-3 MTFR1L Mitochondrial fission regulator 1-like 1 NAS(1)VPNLR 97.472 0.015079 90250000 1909.3 1832.7 2337.6 1735.8 1451.7 1423.7 1659.9 2064 1821.7 2742.2 TRUE FALSE 1936.036091 2032.800384 1747.443969 1624.473557 1649.446117 1676.173205 1974.85736 1888.650317 1996.682425 2183.338135 0.886732137 0.931051563 0.800354256 0.744032054 0.755469843 0.76771123 0.904512832 0.865028777 0.914509023 1 11.09231986 -8.839332738 1.032977822 0.995877358 0.818432233 0.469956017 0.059457913 0.501451708 1.167961026 0.064180982 0.021715621 1.45E-09 8.839332738 -0.177445125 NASGVVNSS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 NASGVVNSSPR 11 0 A0A3B3ITD2;Q8N5G2 A0A3B3ITD2 TMEM57 Macoilin 1 NASGVVNS(0.018)S(0.982)PR;NASGVVNS(0.005)S(0.995)PR 152 0.00048449 138683000 9404.9 9422.3 13161 11099.9 9569.5 9834 9293.1 10592.2 8971.1 12084.3 TRUE FALSE 9536.597617 10451.05858 9838.342777 10388.0021 10873.02791 11577.92182 11056.41721 9692.326496 9832.814239 9621.513027 0.991174422 1.086217786 1.022535931 1.079664089 1.130074644 1.203336917 1.149134983 1.00735991 1.021961329 1 13.23204807 -5.260589305 22.60899985 1.084155104 0.991174348 0.13430846 0.064190567 39.92280945 1061045.144 0.017426121 0.101996429 5.49E-06 5.260589305 -0.092980757 NATDLQNS(ph)SMSEEELTK ddPTM_K562_Paclitaxel_30min_R1 1 NATDLQNSSMSEEELTK 17 0 Q5QNY5;H0YJ60;P40855-5;P40855 Q5QNY5 PEX19 Peroxisomal biogenesis factor 19 1 NATDLQNS(0.613)S(0.074)MS(0.313)EEELTK 159.04 1.25E-07 24126000 2179.1 1806.2 3400 2106.8 1721.4 1507.9 1197.2 2371.6 2317.5 3346.9 TRUE FALSE 2209.614123 2003.407024 2541.627949 1971.679278 1955.883824 1775.304893 1424.36245 2170.117777 2540.10623 2664.799943 0.829185744 0.751803913 0.953778146 0.739897673 0.733970229 0.666205693 0.534510087 0.814364239 0.953207102 1 11.37981151 -8.720517856 3.62329607 0.988306385 0.74501714 0.44935172 0.101422065 0.223701918 5.712873339 0.0953995 0.028708662 1.90E-09 8.720517856 -0.243289245 NATDLQNSS(ph)MSEEELTK ddPTM_K562_Paclitaxel_30min_R1 2 NATDLQNSSMSEEELTK 17 0 Q5QNY5;H0YJ60;P40855-5;P40855 Q5QNY5 PEX19 Peroxisomal biogenesis factor 19 1 NATDLQNS(0.074)S(0.925)MS(0.002)EEELTK;NATDLQNS(0.095)S(0.452)MS(0.452)EEELTK 171.71 2.67E-09 48420000 1747.35 1500.03 3272 2192.43 1301.26 1373.08 1548.38 2441.8 1947.68 3423.1 TRUE FALSE 1771.818291 1663.808348 2445.943132 2051.817353 1478.513643 1616.576459 1842.177022 2234.353849 2134.763366 2725.470341 0.650096339 0.610466503 0.89743891 0.752830556 0.54248018 0.593136691 0.675911601 0.819804866 0.783264207 1 11.41228951 -9.011152634 1.134251107 0.993509762 0.677851891 0.502011366 0.09721742 0.483625047 1.398353525 0.100950486 0.032286165 9.75E-10 9.011152634 -0.315657871 NATDLQNSSMS(ph)EEELTK ddPTM_K562_Paclitaxel_30min_R1 1 NATDLQNSSMSEEELTK 17 0 Q5QNY5;H0YJ60;P40855-5;P40855 Q5QNY5 PEX19 Peroxisomal biogenesis factor 19 1 NATDLQNS(0.011)S(0.179)MS(0.811)EEELTK 230.07 8.01E-40 33477000 1855 1885.4 3120.1 2032.6 1489.3 1334.9 1395.5 2420.6 1997.5 3654 TRUE FALSE 1880.975723 2091.254348 2332.392166 1902.238134 1692.167874 1571.625772 1660.28884 2214.954921 2189.3688 2909.312794 0.646536092 0.718813856 0.801698659 0.653844488 0.581638343 0.540205156 0.570680761 0.761332685 0.752538127 1 11.5064627 -9.133756145 1.440775509 0.997127518 0.651301525 0.651651655 0.076591061 0.416581891 1.795364747 0.083454411 0.024687439 7.35E-10 9.133756145 -0.345825993 NCPHIVVGT(ph)PGR ddPTM_K562_Paclitaxel_30min_R1 1 NCPHIVVGTPGR 12 0 A0A140T9L4;A0A140T973;A0A140T9K1;A0A140T9X9;A0A140T996;F6S4E6;A0A0A0MT12;F6TRA5;F6UJC5;A0A140TA18;F6WLT2;A0A140T9X3;A0A0G2JJZ9;Q5STU3;Q13838;Q13838-2 A0A140T9L4 DDX39B Spliceosome RNA helicase DDX39B 1 NCPHIVVGT(1)PGR 86.005 0.02389 24991000 1761.3 1604.2 1993.5 2126.6 1571.4 1577.1 1320.7 1644.7 1475.4 1858.4 TRUE FALSE 1785.963634 1779.351981 1490.21627 1990.209394 1785.451284 1856.776541 1571.29593 1504.972469 1617.118762 1479.65706 1.207011869 1.202543501 1.007136255 1.345047747 1.206665607 1.254869518 1.061932507 1.017108971 1.092901055 1 10.53104713 -7.841065301 6.461917504 1.041855849 1.201172881 0.483799087 0.081524074 0.199183964 12.92413137 0.034749671 0.023399939 1.44E-08 7.841065301 0.159317032 NCPHVVVGT(ph)PGR ddPTM_K562_Paclitaxel_30min_R1 1 NCPHVVVGTPGR 12 0 K7EQN7;O00148-3;O00148-2;O00148;K7EPJ3;A0A0D9SEM9 K7EQN7;A0A0D9SEM9 DDX39A ATP-dependent RNA helicase DDX39A 1 NCPHVVVGT(1)PGR 84.403 0.026124 34749000 1903.1 1514 1948.8 1573.7 1327.5 1410.7 1401.7 1447.8 1655.8 1820.4 TRUE FALSE 1929.749272 1679.30364 1456.801338 1472.769926 1508.327975 1660.867838 1667.665258 1324.800353 1814.846988 1449.401481 1.331411136 1.158618687 1.005105457 1.016122824 1.040655743 1.14589909 1.150588902 0.914032703 1.252135459 1 10.50124156 -5.376568882 3.007365236 1.066044774 1.344793149 0.440557968 0.091276425 0.270224956 3.896611946 0.022494748 0.153850634 4.20E-06 5.376568882 0.278748376 NCPS(ph)PVLIDCPHPNCNKK ddPTM_K562_Paclitaxel_30min_R1 2 NCPSPVLIDCPHPNCNKK 18 1 O15014 O15014 ZNF609 Zinc finger protein 609 1 NCPS(1)PVLIDCPHPNCNKK;NCPS(1)PVLIDCPHPNCNKK 106 0.00038603 79020000 9165.1 6463.9 20226.2 10101.4 7466 5999.6 5495.3 8856.4 8620.1 13219.7 TRUE FALSE 9293.439677 7169.650462 15119.84566 9453.541416 8482.9956 7063.544821 6538.004488 8103.99354 9448.099121 10525.51788 0.882943697 0.681168427 1.436494225 0.898154516 0.805945674 0.671087627 0.621157511 0.769937748 0.897637458 1 13.3616036 -6.675049392 4.143773584 0.76723598 0.995269905 0.160755249 0.202927761 0.363656195 11.66803096 0.062964364 0.081451041 2.11E-07 6.675049392 0.228033926 NCPSNPGSPLPPAS(ph)PRPPPR ddPTM_K562_Paclitaxel_30min_R1 2 NCPSNPGSPLPPASPRPPPR 20 1 Q9C073;Q9C073-2 Q9C073;Q9C073-2 FAM117A Protein FAM117A 1 NCPSNPGSPLPPAS(1)PRPPPR;NCPSNPGSPLPPAS(1)PRPPPR 80.596 0.0028505 20550200 1555.41 1359.82 2084.34 1686.48 1444.57 1310.82 1150.34 1555.66 2112.64 1799.44 TRUE FALSE 1577.190539 1508.289746 1558.122588 1578.316721 1641.344891 1543.275522 1368.61101 1423.496973 2315.568512 1432.71314 1.100841819 1.052750689 1.087532839 1.101627867 1.145620044 1.077169936 0.955258224 0.993567332 1.616212238 1 10.48453406 -8.689093017 24.99999973 1.308268933 1.065435075 0.304755569 0.147290619 41.53991466 14353.45931 0.091447215 0.034563759 2.05E-09 8.689093017 -0.242833858 NCSASTSQAS(ph)PSPCITER ddPTM_K562_Paclitaxel_30min_R1 2 NCSASTSQASPSPCITER 18 0 F5H7X4;Q66PJ3-7 F5H7X4 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 1 NCSAST(0.001)S(0.018)QAS(0.491)PS(0.491)PCITER;NCSASTSQAS(0.996)PS(0.004)PCITER 250.39 5.94E-66 31189000 2497.8 2175.61 3005.1 2995.7 2039.91 2273.23 2211 2376.6 2503.2 2592.5 TRUE FALSE 2532.776906 2413.150457 2246.425338 2803.56921 2317.780278 2676.355423 2630.525708 2174.692996 2743.643545 2064.147077 1.227033158 1.169078737 1.088306819 1.358221631 1.122875547 1.296591436 1.274388699 1.053555253 1.329189947 1 11.01133006 -11.19330878 4.94874478 0.999978678 1.209433582 0.296719819 0.098333833 69464707.84 0.668761994 16881.51631 0.022428559 6.41E-12 11.19330878 0.209454904 NCSASTSQASPS(ph)PCITER ddPTM_K562_Paclitaxel_30min_R1 2 NCSASTSQASPSPCITER 18 0 F5H7X4;Q66PJ3-7 F5H7X4 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 1 NCS(0.002)AS(0.001)T(0.006)S(0.038)QAS(0.301)PS(0.651)PCITER;NCSASTSQAS(0.262)PS(0.738)PCITER 280.19 4.11E-134 32209000 2368.4 2427.92 3589.1 2816.7 2309.17 2129.06 2272.78 2600.36 2427.52 3574.4 TRUE FALSE 2401.564907 2693.008516 2682.987316 2636.049469 2623.718049 2506.618898 2704.02814 2379.443187 2660.694142 2845.935318 0.843857867 0.946264836 0.942743603 0.926250661 0.921917667 0.880771563 0.950136893 0.836084774 0.934910265 1 11.47468716 -9.016115201 24.6670673 1.000000005 0.908848871 0.350013391 0.038773578 926.1606795 1417647.315 0.036132859 0.009329464 9.64E-10 9.016115201 -0.091151134 NDFMGSLS(ph)FGIS(ph)ELQK ddPTM_K562_Paclitaxel_30min_R1 1 NDFMGSLSFGISELQK 16 0 P05771-2;P05771;I3L1Z0 P05771-2 PRKCB Protein kinase C beta type 2 NDFMGSLS(1)FGIS(1)ELQK 69.672 0.018547 0 1323.7 1176.6 1868.2 1371.8 1289.1 1138.2 1118.3 1300.2 1049.1 1398.1 TRUE FALSE 1342.235884 1305.065167 1396.549804 1283.818888 1464.697245 1340.043789 1330.491587 1189.739894 1149.870743 1113.166453 1.205781832 1.172389955 1.254574104 1.15330361 1.315793556 1.203812589 1.19523148 1.068788852 1.032972867 1 10.12045362 -8.349925649 2.005617354 1.013075929 1.219191918 0.797874606 0.042348216 0.148668383 1.100310904 0.031983819 0.012011851 4.47E-09 8.349925649 0.206115989 NDGIY(ph)SRY(ph)FFSFAANGRY(ph)S(ph)LK ddPTM_K562_Paclitaxel_30min_R1 1 NDGIYSRYFFSFAANGRYSLK 21 2 Q9UQC9 Q9UQC9 CLCA2 "Calcium-activated chloride channel regulator 2;Calcium-activated chloride channel regulator 2, 109 kDa form;Calcium-activated chloride channel regulator 2, 35 kDa form" 4 NDGIY(0.824)S(0.35)RY(0.824)FFS(0.053)FAANGRY(0.974)S(0.975)LK 41.703 0.024442 72703000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 NDKS(ph)EEEQSSSSVK ddPTM_K562_Paclitaxel_30min_R1 2 NDKSEEEQSSSSVK 14 1 G3V2D6;G3V4C1;P07910-4;P07910-2;P07910-3;G3V4W0;B4DY08;B2R5W2;G3V5V7;G3V2Q1;P07910 G3V2D6;G3V2Q1 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 NDKS(1)EEEQSSSSVK;NDKS(1)EEEQSSSSVK 90.872 0.0098854 104902000 5745.6 4004.8 14985.3 7141.6 4762.7 3854.5 3645 5467.5 2897.1 9354.5 TRUE FALSE 5826.056127 4442.057607 11202.07568 6683.569741 5411.460373 4538.041455 4336.619722 5003.001748 3175.3794 7448.047765 0.782225935 0.596405628 1.504028442 0.897358603 0.726560911 0.609292743 0.582249182 0.67171988 0.426337142 1 12.86264661 -6.814292401 3.495260322 0.637153249 0.963579606 0.222549943 0.253718802 0.338585077 8.430835669 0.082093676 0.09818665 1.53E-07 6.814292401 0.326426357 NDLQDTEIS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 NDLQDTEISPR 11 0 Q9NS91 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 1 NDLQDTEIS(1)PR 135.91 0.00079329 37777000 2232.5 2521 2761.9 2684.4 2330.4 2067.3 2508.8 3193.6 1659.4 3274.6 TRUE FALSE 2263.761888 2796.251305 2064.624186 2512.234599 2647.839934 2433.906629 2984.831703 2922.283746 1818.792784 2607.234723 0.868261637 1.072496957 0.791882744 0.96356288 1.015574053 0.933520334 1.144826615 1.120836464 0.69759457 1 11.34830476 -6.517212685 24.27522345 0.99615349 0.918822226 0.055703359 0.131676788 521.2086895 2233032.825 0.038003946 0.050709243 3.04E-07 6.517212685 -0.077331265 NDS(ph)GEENVPLDLTREPSDNLR ddPTM_K562_Paclitaxel_30min_R1 2 NDSGEENVPLDLTREPSDNLR 21 1 Q6R327-3;Q6R327;Q6R327-4 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 NDS(1)GEENVPLDLTREPSDNLR;NDS(0.995)GEENVPLDLT(0.003)REPS(0.001)DNLR 99.148 0.0004021 37552000 834.54 1044.31 1495.11 1097.85 1045.86 693.62 837.36 1052.76 662.32 1159.24 TRUE FALSE 846.2261348 1158.331297 1117.650989 1027.438815 1188.323839 816.6237681 996.2446887 963.3214669 725.9387953 922.9862517 0.916835038 1.254982179 1.210907516 1.11316806 1.287477291 0.884762657 1.079371103 1.043700776 0.786510952 1 9.850165348 -7.268798056 24.98369315 0.969131771 1.162731557 0.395457525 0.121839594 616.114538 2091784.575 0.041528745 0.037334095 5.39E-08 7.268798056 0.193599786 NDS(ph)LPVLR ddPTM_K562_Paclitaxel_30min_R1 4 NDSLPVLR 8 0 Q9GZY8-5 Q9GZY8-5 MFF Mitochondrial fission factor 1 NDS(1)LPVLR;NDS(1)LPVLR;NDS(1)LPVLR;NDS(1)LPVLR 111.52 0.0081923 23322800 8431.7 6273.7 8887.4 8008.6 6002.2 6010 6092.9 7893.1 6027.6 10404.8 TRUE FALSE 8549.769814 6958.683782 6643.665952 7494.964241 6819.801258 7075.789115 7248.995968 7222.531888 6606.577912 8284.296049 1.032045422 0.839984923 0.801959021 0.904719508 0.82322037 0.854120745 0.875028599 0.871834112 0.797482112 1 13.0161634 -5.257934348 24.75068781 0.857372827 1.032045498 0.448165178 0.055894515 246.8928934 1743337.956 0.012687125 0.090992834 5.52E-06 5.257934348 0.174672671 NDS(ph)PTQIPVSSDVCR ddPTM_K562_Paclitaxel_30min_R1 4 NDSPTQIPVSSDVCR 15 0 Q8TC07-2;Q8TC07-3;Q8TC07 Q8TC07-2 TBC1D15 TBC1 domain family member 15 1 NDS(0.502)PT(0.498)QIPVSSDVCR;NDS(0.81)PT(0.19)QIPVSSDVCR;NDS(0.959)PT(0.041)QIPVSSDVCR;NDS(0.92)PT(0.08)QIPVSSDVCR 242.67 1.29E-46 343075000 7804.2 7521.5 10817.2 8686.4 6720.9 6477.7 6488.8 8798 6946.4 9467 TRUE FALSE 7913.482878 8342.722806 8086.264075 8129.293183 7636.400366 7626.429144 7720.015926 8050.554985 7613.632757 7537.620203 1.0498649 1.106811246 1.072787413 1.078495993 1.013104954 1.011782093 1.024198052 1.068049964 1.010084423 1 12.87989339 -6.753998924 24.99946317 1.024284427 1.078819822 0.614248146 0.02155573 119.1735579 400413.5281 0.006408577 0.008112225 1.76E-07 6.753998924 0.054535395 NDS(ph)WGSFDLR ddPTM_K562_Paclitaxel_30min_R1 2 NDSWGSFDLR 10 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 NDS(0.999)WGS(0.001)FDLR;NDS(0.973)WGS(0.027)FDLR 129.17 0.0010365 195787600 6459.4 5887.4 8905.4 6960.8 5494.9 5347.4 5512.8 7036 6270.9 7306.1 TRUE FALSE 6549.851529 6530.206242 6657.121629 6514.365443 6243.398409 6295.686309 6558.825021 6438.247883 6873.247964 5817.11281 1.125962611 1.122585457 1.144403048 1.119862319 1.073281302 1.082269936 1.127505214 1.106777209 1.181556588 1 12.50608757 -11.17679697 4.089453103 0.999951197 1.118508692 0.610902938 0.028804336 3896551.908 5341221.369 1354.035133 0.007235354 6.66E-12 11.17679697 0.118557495 NDSVIVADQTPT(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 1 NDSVIVADQTPTPTR 15 0 B8ZZU6;E9PBF9;P15336-5;P15336;E9PEK8;H7C2N6;P15336-3;P15336-7 B8ZZU6 ATF2 Cyclic AMP-dependent transcription factor ATF-2 1 NDSVIVADQT(0.017)PT(0.933)PT(0.05)R 111.11 0.0047614 12115000 1220.5 1190.7 1513.9 1240.8 996.69 1194.5 1122.4 1406.8 1091.9 1604.1 TRUE FALSE 1237.590766 1320.704653 1131.697221 1161.220642 1132.456052 1406.327803 1335.369541 1287.283559 1196.781874 1277.183539 0.968999934 1.034075849 0.886088167 0.909204203 0.886682311 1.101116449 1.045558058 1.007908041 0.937047681 1 10.31875015 -7.248499265 24.87797096 1.020522303 0.93802887 0.347242079 0.055695517 928.2409714 1784587.915 0.019870196 0.019747259 5.64E-08 7.248499265 -0.082493433 NDVTDGRAEY(ph)WVER ddPTM_K562_Paclitaxel_30min_R1 1 NDVTDGRAEYWVER 14 1 J3KNE0;A6NKT7 J3KNE0 RGPD3 RanBP2-like and GRIP domain-containing protein 3 1 NDVTDGRAEY(1)WVER 81.92 0.025653 19799000 65.747 0 0 133.44 0 0 0 0 0 174.62 TRUE FALSE 66.66766085 0 0 124.8817557 0 0 0 0 0 139.0323481 0.479511867 0 0 0.898220862 0 0 0 0 0 1 7.119276778 -11.75563526 4.510979397 1.067316885 0.147982913 0.438577357 0.287412774 0.143547822 0.007776138 0.205298478 0.06876258 1.76E-12 11.75563526 -0.919333972 NEEDEGS(ph)WIK ddPTM_K562_Paclitaxel_30min_R1 2 NEEDEGSWIK 10 0 D6RBP9 D6RBP9 HNRNPD 1 NEEDEGS(1)WIK;NEEDEGS(1)WIK 104.43 0.0072326 28741000 1704.44 1746.12 1832.28 2325.68 1746.13 1969.9 1757.98 1982.07 2015.7 2132.96 TRUE FALSE 1728.307419 1936.767287 1369.698253 2176.521294 1983.982468 2319.234106 2091.547528 1813.680782 2209.316991 1698.261581 1.017692114 1.140441089 0.806529611 1.281617224 1.168243155 1.365651871 1.23158149 1.067963146 1.300928559 1 10.72984298 -6.286070354 24.99075321 1.211724839 1.003442896 0.36933703 0.127303568 778.4148352 789782.9619 0.034565076 0.051292874 5.18E-07 6.286070354 -0.208281942 NEEPS(ph)EEEIDAPKPK ddPTM_K562_Paclitaxel_30min_R1 4 NEEPSEEEIDAPKPK 15 1 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK;NEEPS(1)EEEIDAPKPK 208.07 6.90E-13 610503000 15332.3 10315 37256.3 16306.2 10189.1 8237.5 7502.9 14815.3 13241.6 21459.8 TRUE FALSE 15546.9995 11441.22658 27850.48628 15260.39332 11577.02792 9698.304965 8926.536107 13556.64779 14513.51485 17086.28098 0.909911263 0.669614798 1.629991121 0.89313721 0.677562773 0.567607718 0.522438799 0.793422969 0.849425036 1 14.06055079 -6.523491822 19.45084898 0.712977835 1.068440696 0.251047807 0.258010729 1.665498309 52776.22894 0.077230597 0.101342454 3.00E-07 6.523491822 0.355462861 NESSDSALGDS(ph)ESEDTGHDMTR ddPTM_K562_Paclitaxel_30min_R1 1 NESSDSALGDSESEDTGHDMTR 22 0 A0A087WX11;J3KNG8;Q8TF40-3;Q8TF40 A0A087WX11 FNIP1 Folliculin-interacting protein 1 1 NESSDSALGDS(0.999)ES(0.001)EDTGHDMTR 148.8 2.41E-18 25883000 2024 2025.8 2609.5 2093.8 1865.7 1950.4 1679.2 2610.9 1755.2 2443.9 TRUE FALSE 2052.342245 2246.983695 1950.699451 1959.51304 2119.839927 2296.276055 1997.819434 2389.087748 1923.794802 1945.831839 1.054737724 1.154767668 1.002501559 1.007031029 1.089426067 1.18009995 1.026717414 1.227797645 0.988674748 1 10.92617132 -5.72756753 24.99961316 1.074921861 1.104752497 0.026254716 0.080545769 994.9146494 734299.2066 0.020045307 0.053028236 1.87E-06 5.72756753 0.029830636 NET(ph)HSICTVR ddPTM_K562_Paclitaxel_30min_R1 2 NETHSICTVR 10 0 Q6UXH1-5 Q6UXH1-5 1 NET(0.993)HS(0.002)ICT(0.004)VR;NET(0.997)HS(0.001)ICT(0.002)VR 112.83 0.011121 140533000 144.08 0 138.44 0 0 0 0 0 0 0 TRUE FALSE 146.0975645 0 103.4891098 0 0 0 0 0 0 0 0 NFDEILR ddPTM_K562_Paclitaxel_30min_R1 1 NFDEILR 7 0 P30041 P30041 PRDX6 Peroxiredoxin-6 0 122.18 0.011641 17974000 3462.5 3370.9 3941.3 3804.2 3387.8 3166.3 3604 4549.8 2691.3 5261.1 FALSE TRUE 3510.985683 3738.946262 2946.27007 3560.215639 3849.275716 3727.798848 4287.840186 4163.266091 2949.81139 4188.884932 0.838167135 0.892587484 0.703354262 0.849919656 0.918926105 0.889926295 1.023623292 0.993884091 0.704199671 1 12.03235054 -6.681052826 3.913551119 0.925493919 0.813749403 0.219713702 0.094526454 0.347341466 10.25169756 0.02894766 0.037407669 2.08E-07 6.681052826 -0.111744516 NFDFEGS(ph)LSPVIAPK ddPTM_K562_Paclitaxel_30min_R1 1 NFDFEGSLSPVIAPK 15 0 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 NFDFEGS(0.5)LS(0.5)PVIAPK 140.68 2.54E-06 95275000 6612.4 5058.5 10699 6647.1 5343.8 4680.4 5419.7 7013.7 5548.9 8653.5 TRUE FALSE 6704.994001 5610.804137 7997.905126 6220.784757 6071.716031 5510.403224 6448.059782 6417.842407 6081.896638 6889.91195 0.973161058 0.81435063 1.160813837 0.902883056 0.881247261 0.799778468 0.935869693 0.931483951 0.882724871 1 12.75026983 -4.914228883 20.09369146 0.921383618 3.712357036 0.023108374 0.096700981 2232.048081 540156.369 0.023288001 9332.199883 1.22E-05 4.914228883 2.790973418 NFDFEGSLS(ph)PVIAPK ddPTM_K562_Paclitaxel_30min_R1 1 NFDFEGSLSPVIAPK 15 0 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 NFDFEGS(0.018)LS(0.982)PVIAPK 79.804 0.020254 5748700 4218.4 3367.9 7240.6 4442.7 3936.4 3207.7 3183.6 4879.6 4917.9 6356.9 TRUE FALSE 4277.470615 3735.618712 5412.620979 4157.765107 4472.604324 3776.540557 3787.67148 4465.047522 5390.286269 5061.360291 0.845122728 0.738066152 1.069400451 0.821471871 0.883676337 0.746151299 0.748350495 0.8821833 1.064987663 1 12.30530946 -8.659398628 4.909471577 1.030739861 0.837709106 0.412305932 0.092167517 0.20612673 7.867249727 0.069790079 0.024218581 2.19E-09 8.659398628 -0.193030755 NFDFEGSLS(ph)PVIAPKK ddPTM_K562_Paclitaxel_30min_R1 1 NFDFEGSLSPVIAPKK 16 1 Q9H1A4;H0Y564 Q9H1A4 ANAPC1 Anaphase-promoting complex subunit 1 1 NFDFEGS(0.003)LS(0.997)PVIAPKK 65.16 0.029601 7277300 969.93 937.91 1693.9 1144.5 1104.6 785.47 757.58 986.07 1601.8 1335.8 TRUE FALSE 983.5120125 1040.314186 1266.253995 1071.096893 1255.065221 924.762076 901.3268502 902.2971986 1755.660047 1063.563227 0.924732999 0.978140424 1.190577075 1.007083421 1.180056991 0.869494218 0.847459584 0.848371941 1.650734063 1 10.05469009 -8.73986278 24.99999699 1.325367709 0.987018715 0.353274454 0.186359928 220.6772076 255692.0717 0.122580926 0.046240958 1.82E-09 8.73986278 -0.338348994 NFEELVS(ph)DSELHQDQPDILGR ddPTM_K562_Paclitaxel_30min_R1 1 NFEELVSDSELHQDQPDILGR 21 0 O95197-7;O95197-2;O95197 O95197-7 RTN3 Reticulon-3 1 NFEELVS(0.958)DS(0.042)ELHQDQPDILGR 102.21 0.00028744 6321200 302.62 191.22 464.57 313.29 247.34 186.91 214.56 320.94 366.62 400.48 TRUE FALSE 306.8576137 212.0980463 347.2835578 293.1969816 281.0318955 220.0558642 255.2716399 293.6741438 401.8354891 318.8619562 0.962352541 0.665172004 1.089134502 0.919510703 0.881359128 0.690128941 0.800571015 0.921007157 1.260217725 1 8.316788168 -8.605938898 6.332287342 1.126012626 0.856808325 0.400677473 0.130938883 0.207238047 12.5505138 0.090601588 0.033274213 2.48E-09 8.605938898 -0.269204301 NFIGNSNHGSQS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 NFIGNSNHGSQSPR 14 0 E7EUL6;A0A0C3SFZ7;Q03112-5;Q03112-6;Q03112-1;Q03112-4;Q03112;Q03112-3 E7EUL6 MECOM MDS1 and EVI1 complex locus protein EVI1 1 NFIGNSNHGS(0.105)QS(0.895)PR 88.637 0.012211 20922000 1613.6 1589.9 2261.7 1748.9 1398.5 1526.7 1388.1 1694.9 1967.1 1862.2 TRUE FALSE 1636.195378 1763.490659 1690.705863 1636.733382 1588.999377 1797.438809 1651.484729 1550.907666 2156.048744 1482.682618 1.103537169 1.189391875 1.140301938 1.103900027 1.071705676 1.212288313 1.11384912 1.0460146 1.454153922 1 10.53399409 NFLSNY(ph)SR ddPTM_K562_Paclitaxel_30min_R1 1 NFLSNYSR 8 0 O15018-2;O15018 O15018-2 PDZD2 PDZ domain-containing protein 2;Processed PDZ domain-containing protein 2 1 NFLSNY(1)SR 72.789 0.030477 0 2562.7 2724.8 2574.9 2942 2468.3 2818.9 2557.4 2490.5 2456.6 2585.3 TRUE FALSE 2598.585707 3022.302879 1924.834649 2753.313288 2804.524249 3318.792336 3042.653299 2278.91648 2692.567406 2058.414441 1.262421044 1.468267429 0.935105492 1.337589376 1.362468215 1.612305214 1.478153883 1.107122276 1.30807837 1 11.00731777 -9.201245224 1.235262073 1.006007283 1.337020981 0.22277425 0.181336088 1.233165539 3.692670811 0.18169919 0.055696052 6.29E-10 9.201245224 0.331013698 NFQAATESVPNSGNIHNGSLEQTEEPETSSHSPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 NFQAATESVPNSGNIHNGSLEQTEEPETSSHSPSR 35 0 E7EUR8;A0A1B0GVL4;P78312-4;P78312-6;P78312-2;P78312-5;P78312 E7EUR8 FAM193A Protein FAM193A 1 NFQAATESVPNSGNIHNGSLEQTEEPET(0.016)S(0.104)S(0.194)HS(0.1)PS(0.586)R;NFQAATESVPNSGNIHNGSLEQTEEPET(0.014)S(0.01)S(0.026)HS(0.196)PS(0.754)R 112.3 3.29E-16 262520000 4782.7 4379.7 5932.4 4807.1 4288.4 4477.6 3923.3 4589.8 4061.3 5726.8 TRUE FALSE 4849.672556 4857.890457 4434.692249 4498.794122 4872.552683 5271.639491 4667.725694 4199.867841 4451.406011 4559.675016 1.063600484 1.065402784 0.972589545 0.986647975 1.068618414 1.156143688 1.023697013 0.921089294 0.976255105 1 12.15471529 -8.0143542 24.38341815 0.963681927 1.050504497 0.370380545 0.050319809 562.9341197 956250.472 0.025072607 0.015215565 9.67E-09 8.0143542 0.08682257 NFS(ph)DNQLQEGK ddPTM_K562_Paclitaxel_30min_R1 1 NFSDNQLQEGK 11 0 X6RJP6;P37802;P37802-2 X6RJP6 TAGLN2 Transgelin-2 1 NFS(1)DNQLQEGK 146.59 0.0002748 55421000 2010.4 1455.1 3061.3 1960.8 1707.4 1860.2 1236.3 2114.1 1217.4 2923.5 TRUE FALSE 2038.551803 1613.972739 2288.436953 1835.043064 1939.976787 2190.080351 1470.881471 1934.494009 1334.336709 2327.689095 0.875783543 0.69337986 0.983136862 0.788354024 0.833434667 0.94088182 0.631906329 0.831079208 0.573245247 1 11.18468266 -7.75470479 24.99996349 0.744980962 0.847418972 0.105237321 0.130421689 325.6894752 1209020.846 0.047105154 0.035643579 1.76E-08 7.75470479 0.10243801 NFYQEHPDLAR ddPTM_K562_Paclitaxel_30min_R1 2 NFYQEHPDLAR 11 0 J3KTA4;P17844-2;P17844;J3QR02;J3KRX8;J3KTQ4;J3QRQ7;X6RLV5 J3KTA4 DDX5 Probable ATP-dependent RNA helicase DDX5 0 ; 134.75 0.0016659 84851000 6151.5 6396.7 7933.9 6909.2 5672.1 5595.4 5763.4 6503.1 5437.7 7364.8 FALSE TRUE 6237.639979 7095.113338 5930.88882 6466.074836 6444.736049 6587.665627 6856.975063 5950.621064 5960.015381 5863.849717 1.063744857 1.209975303 1.011432609 1.102701322 1.099062282 1.123436982 1.169364052 1.014797676 1.016399749 1 12.51763241 -8.294827098 18.82454405 1.011697668 1.110990676 0.452716527 0.050876174 31.51983634 17769.30839 0.027081621 0.013017749 5.07E-09 8.294827098 0.099293008 NFYQEHPDLARR ddPTM_K562_Paclitaxel_30min_R1 2 NFYQEHPDLARR 12 1 J3KTA4;P17844-2;P17844;J3QR02;J3KRX8;J3KTQ4;J3QRQ7;X6RLV5 J3KTA4 DDX5 Probable ATP-dependent RNA helicase DDX5 0 ; 85.813 0.010867 42018000 7425.2 6744 8639.1 7541 6883.7 6318.1 6203.9 6714.9 11439.5 8481.2 FALSE TRUE 7529.175709 7480.332727 6458.052358 7057.354012 7821.376482 7438.526324 7381.057638 6144.427332 12538.31509 6752.726785 1.114983021 1.107749945 0.956362158 1.045111736 1.158254544 1.101558905 1.093048464 0.909917953 1.856778082 1 12.72125447 -8.727424624 24.99990904 1.428392987 1.064101513 0.340517164 0.204542439 161.3968292 118622.6007 0.124858873 0.047186774 1.87E-09 8.727424624 -0.364291474 NGAAGPHS(ph)PDPLLDEQAFGDLTDLPVVPK ddPTM_K562_Paclitaxel_30min_R1 1 NGAAGPHSPDPLLDEQAFGDLTDLPVVPK 29 0 Q9H3Q1-2;Q9H3Q1 Q9H3Q1-2 CDC42EP4 Cdc42 effector protein 4 1 NGAAGPHS(0.999)PDPLLDEQAFGDLT(0.001)DLPVVPK 48.84 0.011339 5516800 906.89 767.02 1398.3 559.48 488.45 494.9 420.65 621.63 670.22 1019.1 TRUE FALSE 919.589258 850.7658375 1045.281871 523.5974569 554.9851595 582.6635663 500.4661416 568.8186514 734.5976256 811.4068606 1.133326944 1.048507079 1.288233957 0.645295822 0.683978885 0.71809051 0.616788156 0.701027658 0.905338199 1 9.664281691 -6.266252649 24.99984214 0.73047678 1.145871108 0.683832054 0.125094864 209.2602155 1086886.172 0.033831154 0.052045003 5.42E-07 6.266252649 0.415394328 NGESY(ph)DVT(ph)LT(ph)T(ph)TEKPLR ddPTM_K562_Paclitaxel_30min_R1 1 NGESYDVTLTTTEKPLR 17 1 H3BMF7;H3BQB6 H3BMF7 STMND1 Stathmin domain-containing protein 1 4 NGES(0.236)Y(0.775)DVT(0.927)LT(0.876)T(0.897)T(0.29)EKPLR 40.779 0.031127 3803300 320.82 301.11 364.9 274.56 334.08 447.21 259.54 249.37 531.8 418.46 TRUE FALSE 325.3124698 333.9862081 272.776482 256.9509505 379.587352 526.5164144 308.7863601 228.184462 582.8817661 333.1776223 0.976393515 1.002426891 0.818711893 0.771213111 1.139294258 1.580287448 0.926792016 0.684873313 1.74946253 1 8.380147696 -6.850698096 7.261815687 1.174040087 0.895598574 0.187072127 0.294389584 0.424924388 29.43871617 0.092189902 0.104927699 1.41E-07 6.850698096 -0.278441512 NGGELTHPTHSPGQS(ph)SPRPVISQR ddPTM_K562_Paclitaxel_30min_R1 1 NGGELTHPTHSPGQSSPRPVISQR 24 1 Q9H9J4-2;Q9H9J4;C9JPC9;E7EWZ4 Q9H9J4-2 USP42 Ubiquitin carboxyl-terminal hydrolase 42 1 NGGELTHPTHSPGQS(0.55)S(0.375)PRPVIS(0.074)QR 62.823 0.0041203 45840000 1134.4 924.89 1094.4 1335.9 843.87 1003.6 673.33 1067.2 1036.4 1202.1 TRUE FALSE 1150.2851 1025.872618 818.1051846 1250.221353 958.8193808 1181.574369 801.0908525 976.5346987 1135.950851 957.1113602 1.201829952 1.071842484 0.854764888 1.306244399 1.001784558 1.234521309 0.836988135 1.020293708 1.186853378 1 9.902542982 -7.743043625 24.99962268 1.012724796 1.102163534 0.105112672 0.142381811 655.4664891 890771.5014 0.053741469 0.041545868 1.81E-08 7.743043625 0.089438738 NGIDILVGT(ph)PGR ddPTM_K562_Paclitaxel_30min_R1 1 NGIDILVGTPGR 12 0 Q9NR30;Q9NR30-2;A0A087WVC1;Q9BQ39 Q9NR30 DDX21;DDX50 Nucleolar RNA helicase 2;ATP-dependent RNA helicase DDX50 1 NGIDILVGT(1)PGR 97.223 0.027093 15257000 1176.8 1067 1870.9 1180.2 947.02 970.51 993.17 1349.4 799.74 1718 TRUE FALSE 1193.278831 1183.498668 1398.568156 1104.507254 1076.020157 1142.616322 1181.618823 1234.760047 876.5586003 1367.870657 0.872362328 0.86521241 1.022441814 0.807464689 0.786638818 0.835324828 0.863838124 0.902687722 0.6408198 1 10.4177161 -6.360398526 24.36483026 0.829116762 0.914651657 0.146529122 0.094571965 63.5451938 15633.17248 0.025532242 0.037870434 4.36E-07 6.360398526 0.085534895 NGLVNS(ph)EVHNEDGR ddPTM_K562_Paclitaxel_30min_R1 1 NGLVNSEVHNEDGR 14 0 F2Z3N7;C9JZ87;Q9NUM4 F2Z3N7 TMEM106B Transmembrane protein 106B 1 NGLVNS(1)EVHNEDGR 84.581 0.017144 11062000 1069.9 875.08 1105.4 1432.9 968.21 670.46 994.02 1197.4 1098.8 1290.9 TRUE FALSE 1084.881901 970.6241937 826.3280986 1341.000207 1100.096594 789.3566673 1182.630106 1095.673396 1204.34465 1027.813871 1.0555237 0.944357943 0.803966673 1.30471114 1.070326666 0.767995733 1.150626722 1.066023165 1.171753644 1 10.00536331 NGPLNES(ph)QEDEEDSEHGTSLNR ddPTM_K562_Paclitaxel_30min_R1 2 NGPLNESQEDEEDSEHGTSLNR 22 0 Q9H2K8 Q9H2K8 TAOK3 Serine/threonine-protein kinase TAO3 1 NGPLNES(1)QEDEEDSEHGTSLNR;NGPLNES(1)QEDEEDSEHGTSLNR 164.48 2.46E-18 101392000 1363.52 1512.15 1789.14 1555.69 1462.7 1310.63 1071.18 1278.21 1271.52 1707.88 TRUE FALSE 1382.613487 1677.251651 1337.449479 1455.915006 1661.944504 1543.051828 1274.430813 1169.618082 1393.655177 1359.813119 1.016767281 1.233442764 0.983553888 1.070672864 1.222185961 1.134752862 0.937210265 0.860131489 1.024887287 1 10.40919268 -7.764462694 24.98175925 0.943901516 1.113362842 0.442805029 0.084552131 68.87170417 569077.1784 0.034098739 0.02411007 1.72E-08 7.764462694 0.169461327 NGPSSS(ph)PFS(ph)SPASSR ddPTM_K562_Paclitaxel_30min_R1 2 NGPSSSPFSSPASSR 15 0 Q96HA1;Q96HA1-2;Q96HA1-3;C9JFL1;A6NF01;A8CG34-2;A8CG34 Q96HA1;A8CG34-2 POM121;POM121C;POM121B Nuclear envelope pore membrane protein POM 121;Putative nuclear envelope pore membrane protein POM 121B;Nuclear envelope pore membrane protein POM 121C 2 NGPS(0.032)S(0.159)S(0.809)PFS(0.606)S(0.394)PASSR;NGPS(0.011)S(0.094)S(0.895)PFS(0.567)S(0.408)PAS(0.023)S(0.002)R 151.49 0.00020053 49650000 7079.7 7063.4 10237.3 8816.4 6973.7 7364.9 6086.9 6947.6 6018.4 8273.3 TRUE FALSE 7178.837643 7834.605899 7652.767002 8250.955565 7923.636006 8670.961607 7241.857499 6357.358014 6596.494211 6587.196919 1.089816766 1.18936871 1.161763812 1.252574603 1.202884338 1.316335569 1.099383788 0.965108238 1.001411419 1 12.68544896 -8.018178433 5.064175121 0.993011477 1.202998528 0.745995468 0.05583183 0.095263615 6.952205096 0.026758535 0.016146241 9.59E-09 8.018178433 0.209987051 NGPSSS(ph)PFSS(ph)PASSR ddPTM_K562_Paclitaxel_30min_R1 1 NGPSSSPFSSPASSR 15 0 Q96HA1;Q96HA1-2;Q96HA1-3;C9JFL1;A6NF01;A8CG34-2;A8CG34 Q96HA1;A8CG34-2 POM121;POM121C;POM121B Nuclear envelope pore membrane protein POM 121;Putative nuclear envelope pore membrane protein POM 121B;Nuclear envelope pore membrane protein POM 121C 2 NGPS(0.014)S(0.07)S(0.916)PFS(0.053)S(0.946)PASSR 176.42 9.18E-06 16139000 1674.9 1522.9 2711.5 2313.2 2056.6 1762.5 1396.3 1852.7 1453.5 1919.3 TRUE FALSE 1698.353768 1689.175372 2026.94829 2164.841706 2336.743739 2075.054628 1661.240636 1695.301571 1593.115169 1528.145606 1.111382162 1.105375931 1.326410442 1.416646226 1.529136837 1.357890648 1.087095777 1.109384841 1.042515296 1 10.5775663 -7.789356316 8.598405953 1.068114465 1.314458839 0.493786279 0.122822854 0.250843933 67.85974173 0.05926966 0.0405308 1.62E-08 7.789356316 0.246344374 NGPSSS(ph)PFSSPAS(ph)SR ddPTM_K562_Paclitaxel_30min_R1 1 NGPSSSPFSSPASSR 15 0 Q96HA1;Q96HA1-2;Q96HA1-3;C9JFL1;A6NF01;A8CG34-2;A8CG34 Q96HA1;A8CG34-2 POM121;POM121C;POM121B Nuclear envelope pore membrane protein POM 121;Putative nuclear envelope pore membrane protein POM 121B;Nuclear envelope pore membrane protein POM 121C 2 NGPS(0.01)S(0.089)S(0.89)PFS(0.068)S(0.046)PAS(0.814)S(0.083)R 147.49 6.47E-05 22690000 2599.1 2583 3857.8 3241.6 2388.6 2548.3 2318.3 2795.1 2599.7 3167.3 TRUE FALSE 2635.495419 2865.020675 2883.850677 3033.698285 2713.967759 3000.205225 2758.185323 2557.638809 2849.412801 2521.802521 1.045083981 1.136100329 1.143567211 1.202988045 1.076201541 1.189706648 1.093735651 1.014210584 1.129911155 1 11.30023959 -7.999627077 24.99981388 1.054031139 1.134301784 0.324463539 0.054290751 15.02875752 1007472.338 0.021999246 0.014675612 1.00E-08 7.999627077 0.080270645 NGPSSS(ph)PFSSPASSR ddPTM_K562_Paclitaxel_30min_R1 1 NGPSSSPFSSPASSR 15 0 Q96HA1;Q96HA1-2;Q96HA1-3;C9JFL1;A6NF01;A8CG34-2;A8CG34 Q96HA1;A8CG34-2 POM121;POM121C;POM121B Nuclear envelope pore membrane protein POM 121;Putative nuclear envelope pore membrane protein POM 121B;Nuclear envelope pore membrane protein POM 121C 1 NGPS(0.004)S(0.012)S(0.984)PFSSPASSR 139.21 1.72E-06 78820000 2523.3 2183.1 3572.8 2822.5 2431 2232 1960.4 2899.4 2647.9 2942.2 TRUE FALSE 2558.633985 2421.458241 2670.802452 2641.477483 2762.143357 2627.813861 2332.375666 2653.077873 2902.242626 2342.578025 1.092229995 1.033672396 1.140112484 1.127594238 1.179104101 1.121761509 0.995644816 1.132546214 1.238909695 1 11.19388139 -5.767139904 24.99672962 1.120131075 1.062951193 0.084268066 0.07059797 306.287443 1343088.433 0.018538373 0.040325737 1.71E-06 5.767139904 -0.057179881 NGS(ph)EADIDEGLYSR ddPTM_K562_Paclitaxel_30min_R1 1 NGSEADIDEGLYSR 14 0 Q5JRR9;P22314;Q5JRS1;Q5JRS3;Q5JRS2;Q5JRS0;P22314-2 Q5JRR9 UBA1 Ubiquitin-like modifier-activating enzyme 1 1 NGS(1)EADIDEGLYSR 133.52 4.95E-05 7680600 1027.4 1062.6 1403.9 965.8 887.96 765.75 648.65 875.28 938.72 1264.3 TRUE FALSE 1041.78677 1178.618261 1049.468082 903.8579108 1008.915185 901.5450108 771.7279513 800.9195007 1028.88825 1006.634966 1.03492011 1.170849713 1.042550793 0.897900372 1.00226519 0.895602717 0.766641312 0.795640453 1.022106608 1 9.975324901 -6.159818568 3.071095515 0.898614323 1.105055146 0.456826207 0.086091556 0.221366774 3.997859758 0.025375055 0.048410247 6.92E-07 6.159818568 0.206440824 NGSPT(ph)PAGSLGGGAVATAGGPGSR ddPTM_K562_Paclitaxel_30min_R1 1 NGSPTPAGSLGGGAVATAGGPGSR 24 0 Q6P1L5-2;Q6P1L5 Q6P1L5-2 FAM117B Protein FAM117B 1 NGS(0.022)PT(0.978)PAGSLGGGAVATAGGPGSR 116.44 1.75E-07 8922000 575.55 310.69 719.57 502.31 475.28 327.75 477.46 483.97 390.42 447.66 TRUE FALSE 583.6094757 344.6121849 537.905654 470.0940849 540.0211826 385.8718607 568.0555425 442.8537277 427.9215854 356.4266463 1.637390139 0.966853036 1.509162291 1.318908364 1.515097674 1.08261227 1.593751613 1.242482099 1.200588087 1 8.477461386 -8.965615415 1.863160323 1.005536951 1.35717689 0.238773076 0.204891313 0.476501578 3.74994541 0.179983809 0.05121216 1.08E-09 8.965615415 0.351639939 NGSTAVAESVAS(ph)PQK ddPTM_K562_Paclitaxel_30min_R1 1 NGSTAVAESVASPQK 15 0 A6NNK5;Q12888;Q12888-3;Q12888-2;C9JXV0 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 NGSTAVAESVAS(1)PQK 139.39 1.82E-06 12708000 1996.5 1997.9 3638.8 2223.8 1667.7 1525.3 1280 2293.9 1246.2 2829.3 TRUE FALSE 2024.45716 2216.037478 2720.139936 2081.175421 1894.868974 1795.790539 1522.873318 2099.018877 1365.903078 2252.687107 0.898685465 0.983730706 1.207508991 0.923863512 0.841159417 0.797177084 0.676025229 0.931784477 0.606343897 1 11.13743123 -6.665393135 3.058200884 0.795271593 1.029571239 0.371214999 0.12830256 0.249113798 4.667762683 0.038690151 0.051036156 2.16E-07 6.665393135 0.234299646 NHGSS(ph)PEQVVRPK ddPTM_K562_Paclitaxel_30min_R1 1 NHGSSPEQVVRPK 13 1 O43164-2;O43164 O43164-2 PJA2 E3 ubiquitin-protein ligase Praja-2 1 NHGS(0.189)S(0.811)PEQVVRPK 105.39 0.0042059 20018000 1668.4 1406 3134.5 1931.7 1173.6 1357 1247 1656.7 1400.3 2213.4 TRUE FALSE 1691.762747 1559.511835 2343.156708 1807.809408 1333.464189 1597.644897 1483.61174 1515.952994 1534.805072 1762.307865 0.959970038 0.884925878 1.329595557 1.025819293 0.756657912 0.906564017 0.8418573 0.860208948 0.870906328 1 10.78325026 -6.619671522 7.388422907 0.866566554 1.063007784 0.342585244 0.120686504 0.251527262 16.65640396 0.036214451 0.046809646 2.40E-07 6.619671522 0.19644123 NHLLQFALES(ph)PAKSPASSSSK ddPTM_K562_Paclitaxel_30min_R1 1 NHLLQFALESPAKSPASSSSK 21 1 Q9NS91;F8WE49 Q9NS91 RAD18 E3 ubiquitin-protein ligase RAD18 1 NHLLQFALES(0.964)PAKS(0.033)PAS(0.002)S(0.001)SSK 61.736 0.012919 14091000 3320.6 2538.7 8795.7 3756.5 2894.3 2291.2 1968.2 3904.5 3213.6 5631.1 TRUE FALSE 3367.098645 2815.883851 6575.116751 3515.574903 3288.552661 2697.51215 2341.655675 3572.788354 3522.280639 4483.478729 0.751001365 0.628057814 1.466521232 0.784117672 0.733482383 0.601656061 0.522285443 0.796878623 0.785613327 1 12.13040284 NHLS(ph)PQQGGATPQVPSPCCR ddPTM_K562_Paclitaxel_30min_R1 4 NHLSPQQGGATPQVPSPCCR 20 0 Q9H4L4;A0A087X0R7 Q9H4L4 SENP3;SENP3-EIF4A1 Sentrin-specific protease 3 1 NHLS(1)PQQGGATPQVPSPCCR;NHLS(0.979)PQQGGAT(0.001)PQVPS(0.02)PCCR;NHLS(1)PQQGGATPQVPSPCCR;NHLS(1)PQQGGATPQVPSPCCR 172.55 1.43E-56 437626000 3609.17 3742.97 4778.06 3748.63 3934.29 3081.13 2602.85 3951.51 3430.98 4244.64 TRUE FALSE 3659.709515 4151.640123 3571.779659 3508.20965 4470.206906 3627.525144 3096.7272 3615.804561 3760.540959 3379.580038 1.082888842 1.228448528 1.056870859 1.038060827 1.322710768 1.073365656 0.916305329 1.069897597 1.112724338 1 11.72262827 -7.515806478 24.97149923 1.025453592 1.145319806 0.281896724 0.091518276 446.4876679 1576516.494 0.034339331 0.027703765 3.05E-08 7.515806478 0.119866214 NHLSPQQGGATPQVPS(ph)PCCR ddPTM_K562_Paclitaxel_30min_R1 1 NHLSPQQGGATPQVPSPCCR 20 0 Q9H4L4;A0A087X0R7 Q9H4L4 SENP3;SENP3-EIF4A1 Sentrin-specific protease 3 1 NHLSPQQGGAT(0.001)PQVPS(0.999)PCCR 89.803 0.00075259 29936000 1490.5 1219.9 1736.2 1945.1 1262.7 1499.3 1041 1893.9 1542.5 1521.5 TRUE FALSE 1511.371599 1353.092807 1297.874837 1820.349992 1434.701118 1765.179804 1238.524316 1733.001374 1690.664017 1211.417465 1.247605918 1.116950058 1.071368768 1.502661176 1.184316026 1.457119329 1.022376143 1.430556702 1.395608092 1 10.2424804 -6.210435444 24.99898419 1.294678978 1.142472425 0.122016432 0.169769759 682.5195544 334527.8505 0.043430763 0.07522417 6.16E-07 6.210435444 -0.152206552 NHS(ph)GSRTPPVALNSSR ddPTM_K562_Paclitaxel_30min_R1 1 NHSGSRTPPVALNSSR 16 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 NHS(0.662)GS(0.169)RT(0.169)PPVALNSSR 76.341 0.017089 81284000 757.09 792.84 1441 873.72 774.79 909.77 714.98 925.28 931.69 674.09 TRUE FALSE 767.6915958 879.4049524 1077.201728 817.6835098 880.3295153 1071.104936 850.6437226 846.6716886 1021.182987 536.710088 1.430365505 1.638510198 2.0070458 1.523510603 1.640232846 1.995686237 1.58492218 1.577521473 1.902671499 1 9.067999195 -11.03322567 5.137777106 0.999992427 1.702024363 0.549025342 0.190332991 1.63E-05 3.06E-06 0.181394957 0.043994265 9.26E-12 11.03322567 0.702031937 NHS(ph)PLPPPQTNHEEPSR ddPTM_K562_Paclitaxel_30min_R1 2 NHSPLPPPQTNHEEPSR 17 0 A0A0D9SGG1;Q13094 A0A0D9SGG1 LCP2 Lymphocyte cytosolic protein 2 1 NHS(1)PLPPPQTNHEEPSR;NHS(1)PLPPPQTNHEEPSR 105.68 0.00091549 15182400 1866.6 1800.8 2349.78 2001.85 1929.7 1896.53 1461.88 2141.52 1894.05 2351.71 TRUE FALSE 1892.738159 1997.417434 1756.548977 1873.460301 2192.55781 2232.852967 1739.264098 1959.584509 2075.981965 1872.430211 1.01084577 1.066751338 0.938111854 1.000550135 1.170969042 1.192489287 0.9288806 1.046546086 1.108709928 1 10.87069623 NHSVNEEEQEEQGEGS(ph)EDEWEQVGPR ddPTM_K562_Paclitaxel_30min_R1 2 NHSVNEEEQEEQGEGSEDEWEQVGPR 26 0 Q14694;Q14694-3;Q14694-2;H3BNA1 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 NHSVNEEEQEEQGEGS(1)EDEWEQVGPR;NHSVNEEEQEEQGEGS(1)EDEWEQVGPR 113.65 5.93E-08 696030000 1710.18 1604.54 2252.68 1812.96 1072.34 1393.05 1362.68 1490.5 1690.2 2200.7 TRUE FALSE 1734.127796 1779.729103 1683.963073 1696.68486 1218.410863 1640.087858 1621.241416 1363.872722 1852.551262 1752.196132 0.989688177 1.015713407 0.96105855 0.968319031 0.695362146 0.936018422 0.925262524 0.778379028 1.057273914 1 10.77494856 -6.548716889 24.99979014 0.885464974 0.987039476 0.147447943 0.097921797 356.0980457 344541.9431 0.02785107 0.035956688 2.83E-07 6.548716889 0.101574502 NHVDES(ph)PVEFPATR ddPTM_K562_Paclitaxel_30min_R1 2 NHVDESPVEFPATR 14 0 Q9UBC3-4;Q9UBC3-3;Q9UBC3-5;Q9UBC3-2;Q9UBC3-6;Q9UBC3 Q9UBC3-4 DNMT3B DNA (cytosine-5)-methyltransferase 3B 1 NHVDES(1)PVEFPATR;NHVDES(1)PVEFPATR 89.011 0.011755 24669000 5837.3 5405 7403.6 5985.9 4632.5 5137.2 5148 5612.6 5063.1 7255.3 TRUE FALSE 5919.04021 5995.136179 5534.469613 5601.991166 5263.524929 6048.21029 6124.806126 5135.774597 5549.433378 5776.665877 1.024646454 1.037819446 0.958073347 0.969762019 0.911170049 1.047007118 1.060266641 0.889055158 0.960663728 1 12.49602134 -5.755849404 24.80882677 0.973759112 1.031232975 0.169843459 0.05014961 222.6976106 988320.4557 0.013533603 0.033772366 1.75E-06 5.755849404 0.057473863 NIDDASQMDLFHRDS(ph)DDDQTEEQLDESEAR ddPTM_K562_Paclitaxel_30min_R1 4 NIDDASQMDLFHRDSDDDQTEEQLDESEAR 30 1 E7ESG2;Q9HAW4-2;Q9HAW4-3;Q9HAW4 E7ESG2 CLSPN Claspin 1 NIDDAS(0.137)QMDLFHRDS(0.856)DDDQT(0.006)EEQLDESEAR;NIDDASQMDLFHRDS(0.995)DDDQT(0.005)EEQLDESEAR;NIDDAS(0.002)QMDLFHRDS(0.995)DDDQT(0.003)EEQLDESEAR;NIDDAS(0.003)QMDLFHRDS(0.996)DDDQT(0.001)EEQLDESEAR 129.42 3.96E-16 143631000 4046.05 3280.31 4977.82 4221.01 3697.36 3044.65 3429.6 3830.48 3513.59 4347.31 TRUE FALSE 4102.707183 3638.465339 3721.107776 3950.293311 4201.003029 3584.575928 4080.348696 3505.056815 3851.086019 3461.325836 1.185299327 1.051176778 1.075052726 1.141265948 1.213697649 1.03560777 1.178839812 1.01263417 1.112604303 1 11.75710904 -9.067650921 0.740693829 1.002679179 1.121721767 0.244380467 0.063320361 1.13790755 1.412174492 0.060658166 0.023134299 8.56E-10 9.067650921 0.119042588 NIDDGTSDRPYSHALVAGIDR ddPTM_K562_Paclitaxel_30min_R1 1 NIDDGTSDRPYSHALVAGIDR 21 1 K7ELC7;P61353 K7ELC7 RPL27 60S ribosomal protein L27 0 104.06 0.00029861 20209000 2408.5 2040.1 3109 2563.3 1972.8 2010.6 2475.8 2628 1218.1 3436.4 FALSE TRUE 2442.226431 2262.845017 2324.094498 2398.901411 2241.52876 2367.15168 2945.570125 2404.734997 1335.103948 2736.059794 0.892607112 0.827045163 0.84943118 0.87677229 0.819254303 0.86516811 1.07657374 0.878904402 0.487965925 1 11.41788404 -8.575915437 24.99999939 0.723799751 0.886205149 0.14983214 0.133435954 152.1164224 71700.47746 0.084968981 0.032115263 2.66E-09 8.575915437 0.162405398 NIDDGTSDRPYSHALVAGIDRYPR ddPTM_K562_Paclitaxel_30min_R1 1 NIDDGTSDRPYSHALVAGIDRYPR 24 2 K7ELC7;P61353 K7ELC7 RPL27 60S ribosomal protein L27 0 66.448 0.0020036 27658000 917.18 780.55 1027.5 833.34 896.31 1009.3 806.98 1372 1062.7 1445.7 FALSE TRUE 930.0233497 865.7730887 768.094917 779.8933023 1018.402597 1188.285184 960.1002423 1255.440036 1164.777083 1151.065546 0.807967324 0.752149251 0.667290338 0.677540306 0.884747702 1.032334942 0.834096933 1.090676409 1.011912038 1 10.16875427 -6.949565999 3.930891335 0.987994004 0.724931361 0.757125973 0.071267027 0.112253319 3.639004409 0.023800597 0.026691416 1.12E-07 6.949565999 -0.263062643 NIDEHANEDVER ddPTM_K562_Paclitaxel_30min_R1 2 NIDEHANEDVER 12 0 P61026 P61026 RAB10 Ras-related protein Rab-10 0 ; 113.53 0.0098349 26304000 7825.8 7947.3 9806.2 9238.4 7235.3 7198.6 7762.5 9136.2 7700.5 9912.5 FALSE TRUE 7935.385345 8815.01309 7330.503528 8645.890374 8220.870355 8475.170637 9235.393852 8360.022784 8440.167432 7892.327059 1.005455715 1.116909249 0.928813957 1.095480498 1.041628191 1.073849395 1.170173737 1.059259547 1.069414302 1 12.94623503 NIEDYIHR ddPTM_K562_Paclitaxel_30min_R1 2 NIEDYIHR 8 0 Q9BUQ8 Q9BUQ8 DDX23 Probable ATP-dependent RNA helicase DDX23 0 ; 164.46 2.50E-09 10395300 8385.3 8378.9 10433.1 9300.6 8442.4 8707.7 8134.6 9373.7 8719 10631.5 FALSE TRUE 8502.720071 9293.736638 7799.13487 8704.101144 9592.397811 10251.88833 9678.097885 8577.345676 9556.498908 8464.794464 1.004480393 1.09792821 0.921361399 1.02827082 1.133210954 1.211120763 1.143335249 1.01329639 1.128969988 1 13.04725932 -6.687534546 5.836634259 1.112732904 1.010837982 0.288271708 0.070461147 0.260800881 15.3139445 0.021529189 0.027728751 2.05E-07 6.687534546 -0.101894922 NIGRDT(ph)PTSAGPNSFNK ddPTM_K562_Paclitaxel_30min_R1 1 NIGRDTPTSAGPNSFNK 17 1 Q8WW12;Q8WW12-3 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 1 NIGRDT(0.982)PT(0.009)S(0.009)AGPNSFNK 110.6 0.0034877 11217000 3027.7 2480 4550.8 3368.3 2464.4 2154 2163.2 3217.4 2234.6 3977.8 TRUE FALSE 3070.097141 2750.774787 3401.894256 3152.272314 2800.093003 2535.981656 2573.655907 2944.061788 2449.243314 3167.122177 0.969364922 0.868540787 1.074127889 0.995311244 0.88411272 0.800721133 0.812616553 0.929570008 0.773334017 1 11.62895681 -6.868025837 4.86258752 0.854554948 0.975657547 0.325940044 0.07732745 0.237782207 9.201035446 0.023841393 0.027376511 1.36E-07 6.868025837 0.121102598 NIGRDTPTS(ph)AGPNSFNK ddPTM_K562_Paclitaxel_30min_R1 1 NIGRDTPTSAGPNSFNK 17 1 Q8WW12;Q8WW12-3 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 1 NIGRDT(0.161)PT(0.294)S(0.545)AGPNS(0.001)FNK 153.36 3.82E-07 11150000 2232.9 2387.7 4010.8 2851.7 1864.6 1593.6 1801.5 2609.3 1984 2905.6 TRUE FALSE 2264.167489 2648.397161 2998.223935 2668.804726 2118.590088 1876.202585 2143.325221 2387.623678 2174.572065 2313.437125 0.978702842 1.144788908 1.296004072 1.153610226 0.915775953 0.811002194 0.926467894 1.032067676 0.939974569 1 11.17582217 -6.758743869 24.98071736 0.932270116 1.154293695 0.555915621 0.08979013 53.40776058 494952.861 0.028899198 0.035624525 1.74E-07 6.758743869 0.222023579 NIIHGS(ph)DSVK ddPTM_K562_Paclitaxel_30min_R1 1 NIIHGSDSVK 10 0 Q32Q12;O60361;P22392;P22392-2 Q32Q12 NME1-NME2;NME2P1;NME2 Nucleoside diphosphate kinase;Putative nucleoside diphosphate kinase;Nucleoside diphosphate kinase B 1 NIIHGS(0.995)DS(0.005)VK 78.486 0.02902 5582900 3561.3 2857.2 5242.9 3298.3 2733.7 2534.4 2238.2 3096.8 2367.2 4489.9 TRUE FALSE 3611.169188 3169.158758 3919.265052 3086.761801 3106.076222 2983.840255 2662.886766 2833.70751 2594.580137 3574.855915 1.010157968 0.886513704 1.096342103 0.863464675 0.868867528 0.834674271 0.744893453 0.792677405 0.725785933 1 11.80366938 -6.63844111 1.991841327 0.807059182 0.985759816 0.406064648 0.087953075 0.298581206 2.420095751 0.02796968 0.039927337 2.30E-07 6.63844111 0.178700634 NINMDNDLEVLTS(ph)SPTR ddPTM_K562_Paclitaxel_30min_R1 1 NINMDNDLEVLTSSPTR 17 0 Q9Y5T5-4;Q9Y5T5-3;Q9Y5T5-2;Q9Y5T5 Q9Y5T5-4 USP16 Ubiquitin carboxyl-terminal hydrolase 16 1 NINMDNDLEVLT(0.002)S(0.769)S(0.225)PT(0.003)R 272.31 1.02E-112 40046000 1583.1 2008.5 2265.5 2129.6 1996.7 1976.6 1822.7 1751.7 1461.3 2541 TRUE FALSE 1605.268284 2227.794822 1693.546506 1993.016988 2268.684344 2327.122257 2168.54781 1602.882151 1601.664394 2023.142805 0.793452781 1.101155498 0.837086982 0.985109396 1.12136639 1.15025111 1.071870856 0.792273362 0.791671448 1 10.98238244 -8.262603382 24.99949797 0.843979299 1.014455709 0.226621735 0.1231255 143.2504054 3076525.88 0.064240528 0.033565013 5.46E-09 8.262603382 0.170476411 NINMDNDLEVLTSS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 3 NINMDNDLEVLTSSPTR 17 0 Q9Y5T5-4;Q9Y5T5-3;Q9Y5T5-2;Q9Y5T5 Q9Y5T5-4 USP16 Ubiquitin carboxyl-terminal hydrolase 16 1 NINMDNDLEVLTS(0.094)S(0.894)PT(0.012)R;NINMDNDLEVLTS(0.02)S(0.98)PTR;NINMDNDLEVLTS(0.027)S(0.964)PT(0.009)R 355.07 0 391684000 12011.6 11316.6 14410.9 13282.9 10905.5 10545.2 10528.4 13907 9601.7 15186.6 TRUE FALSE 12179.79946 12552.18466 10772.69006 12430.99425 12391.01373 12415.24316 12526.10894 12725.51355 10523.98619 12091.56258 1.007297392 1.038094504 0.890926213 1.028071778 1.024765298 1.026769127 1.035937982 1.052429201 0.870357831 1 13.56171307 NIPS(ph)PGQLDPDTR ddPTM_K562_Paclitaxel_30min_R1 1 NIPSPGQLDPDTR 13 0 Q9P2D1 Q9P2D1 CHD7 Chromodomain-helicase-DNA-binding protein 7 1 NIPS(1)PGQLDPDTR 157.37 0.0007155 12197000 1202.6 1057.3 1453.1 1402.7 1294.8 1181.8 1030.1 1320.9 674.79 1701.8 TRUE FALSE 1219.44011 1172.73959 1086.246933 1312.7371 1471.173681 1391.375637 1225.556098 1208.6813 739.6065945 1354.972226 0.899974248 0.865508213 0.801674686 0.968829527 1.085759289 1.026866537 0.904487984 0.892034004 0.545846314 1 10.40404756 -2.015258819 19.33495928 0.903280629 0.197242659 0 0.142081639 0 0 0.033580845 0 0.009654753 2.015258819 -0.70603797 NIPSPGQLDPDT(ph)RIPVINLEDGTR ddPTM_K562_Paclitaxel_30min_R1 2 NIPSPGQLDPDTRIPVINLEDGTR 24 1 Q9P2D1 Q9P2D1 CHD7 Chromodomain-helicase-DNA-binding protein 7 1 NIPS(0.133)PGQLDPDT(0.866)RIPVINLEDGT(0.001)R;NIPS(0.003)PGQLDPDT(0.972)RIPVINLEDGT(0.025)R 97.689 0.00020948 367520000 3602.7 3106.6 4807.3 4807.3 3504.1 3586.9 3722.9 4477.8 2581 4528.8 TRUE FALSE 3653.148915 3445.789094 3593.637659 4498.981295 3981.417745 4222.986352 4429.30084 4097.38294 2828.916582 3605.828074 1.013123432 0.95561658 0.996619247 1.247697118 1.104161836 1.171155769 1.22837272 1.136322325 0.784540062 1 11.8161149 -6.037242297 24.29418915 1.111579971 0.982306895 0.126031675 0.125479933 682.844021 445437.622 0.034332498 0.059492107 9.18E-07 6.037242297 -0.129273076 NIS(ph)AGSLGSLLGHHHGQGAESDPHVTEPLMGGVPETR ddPTM_K562_Paclitaxel_30min_R1 1 NISAGSLGSLLGHHHGQGAESDPHVTEPLMGGVPETR 37 0 P04920-2;P04920-3;P04920 P04920-2 SLC4A2 Anion exchange protein 2 1 NIS(0.868)AGS(0.122)LGS(0.009)LLGHHHGQGAES(0.001)DPHVTEPLMGGVPETR 50.466 0.0010081 36018000 434.99 585.34 552.1 605.85 456.88 406.87 409.15 439.88 483.92 556.7 TRUE FALSE 441.0812021 649.2494007 412.7155267 566.9934927 519.114791 479.0226818 486.7840766 402.5094484 530.4026782 443.2442344 0.995119999 1.464766714 0.931124411 1.279189775 1.171170995 1.080719487 1.098229912 0.908098554 1.196637513 1 8.791958055 -7.458409356 2.169836393 1.041945114 1.178041187 0.1179464 0.152807238 0.631660788 5.903507516 0.060976607 0.049188487 3.48E-08 7.458409356 0.136096073 NISSSPS(ph)VESLPGGR ddPTM_K562_Paclitaxel_30min_R1 1 NISSSPSVESLPGGR 15 0 Q92609;Q92609-2;C9J3F6 Q92609 TBC1D5 TBC1 domain family member 5 1 NISSS(0.224)PS(0.776)VESLPGGR 181.81 1.14E-06 39508000 913.78 976.69 1272.9 1064.2 854.98 842.25 692.26 832.21 686.81 1121.9 TRUE FALSE 926.5757393 1083.328317 951.540652 995.9469752 971.4427509 991.6112117 823.6127212 761.508566 752.7811692 893.2561642 1.037301254 1.212785717 1.065249466 1.114962331 1.08752986 1.110108445 0.922034187 0.852508605 0.842738287 1 9.802930154 -7.807232052 4.308820774 0.886418166 1.108370438 0.735509766 0.058745516 0.096770816 3.803107017 0.023883932 0.016235628 1.56E-08 7.807232052 0.221952272 NIVQS(ph)TEHLHEDNGDVEVRR ddPTM_K562_Paclitaxel_30min_R1 1 NIVQSTEHLHEDNGDVEVRR 20 1 Q6PL18 Q6PL18 ATAD2 ATPase family AAA domain-containing protein 2 1 NIVQS(0.83)T(0.17)EHLHEDNGDVEVRR 47.554 0.029043 10253000 642.55 567.21 767.85 727.82 637.11 417.26 492.61 468.87 685.15 850.86 TRUE FALSE 651.5476824 629.139906 573.9967709 681.1408828 723.8951684 491.2552024 586.0801759 429.0365669 750.9617188 677.454265 0.96175892 0.928682479 0.847284903 1.00544187 1.068552087 0.725148881 0.865121391 0.633307057 1.108505412 1 9.403979743 -7.259534238 24.99623465 0.843417295 0.956476107 0.100306769 0.13456465 345.2109158 4529325.626 0.043972639 0.041880353 5.50E-08 7.259534238 0.113058812 NKDVYPSCSSTTASTVGNSSSHNTASQS(ph)PDFVR ddPTM_K562_Paclitaxel_30min_R1 2 NKDVYPSCSSTTASTVGNSSSHNTASQSPDFVR 33 1 Q6PIJ6;Q6PIJ6-2 Q6PIJ6 FBXO38 F-box only protein 38 1 NKDVYPSCSSTTASTVGNSSSHNT(0.035)AS(0.13)QS(0.834)PDFVR;NKDVYPSCSSTTASTVGNSSS(0.002)HNT(0.171)AS(0.355)QS(0.471)PDFVR 111.87 5.64E-15 17044300 2677.2 2421.4 4185.9 2712.4 2331.8 1999.02 1517.4 3015.7 2144 3704.4 TRUE FALSE 2714.68906 2685.776641 3129.117774 2538.438804 2649.430638 2353.518129 1805.318729 2759.497462 2349.94078 2949.441247 0.920407912 0.910605235 1.060918836 0.860650744 0.898282222 0.797953895 0.612088385 0.935600078 0.796741004 1 11.52622596 -6.767543155 1.992024728 0.815399315 0.955036383 0.194562906 0.105785092 0.470555017 3.845295253 0.036146748 0.046799517 1.71E-07 6.767543155 0.139637068 NKPGPNIES(ph)GNEDDDASFK ddPTM_K562_Paclitaxel_30min_R1 4 NKPGPNIESGNEDDDASFK 19 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 NKPGPNIES(1)GNEDDDASFK;NKPGPNIES(0.989)GNEDDDAS(0.011)FK;NKPGPNIES(0.998)GNEDDDAS(0.002)FK;NKPGPNIES(1)GNEDDDASFK 121.39 1.66E-05 1408520000 14457.7 9544.8 33992.6 15010.5 9916.1 8939.8 7848.2 13967.6 11461.4 21001.6 TRUE FALSE 14660.15241 10586.93354 25410.74771 14047.79371 11266.8407 10525.14801 9337.35498 12780.9652 12562.31868 16721.46239 0.876726692 0.633134429 1.519648648 0.840105571 0.673795176 0.629439445 0.558405405 0.764344942 0.751269141 1 14.0294134 -6.518600769 24.36373251 0.708993248 1.006784798 0.22304614 0.232236827 182.9994746 1042214.865 0.068150007 0.090297696 3.03E-07 6.518600769 0.29779155 NKQDDDLNCEPLS(ph)PHNITPEPVSK ddPTM_K562_Paclitaxel_30min_R1 2 NKQDDDLNCEPLSPHNITPEPVSK 24 1 F8WE35;F5H8I0;F5H2W9;F5H2H9;F5GZ10;F5H502;F5H1K9;A8MV73;Q6VMQ6-2;Q6VMQ6-5;Q6VMQ6;Q6VMQ6-4 F8WE35 ATF7IP Activating transcription factor 7-interacting protein 1 1 NKQDDDLNCEPLS(0.996)PHNIT(0.004)PEPVSK;NKQDDDLNCEPLS(0.948)PHNIT(0.052)PEPVSK 68.634 0.0014423 44830000 9046.7 6522.7 20385.1 10736.1 8140.5 6199.2 5705.7 9824.2 6239.9 14623.6 TRUE FALSE 9173.381711 7234.870444 15238.62939 10047.5346 9249.37392 7298.541079 6788.326789 8989.572889 6839.270276 11643.30229 0.787867693 0.621376158 1.308789294 0.862945438 0.794394381 0.626844592 0.583024181 0.772081035 0.587399528 1 13.50721268 -6.926831139 3.243083128 0.692549179 0.904856865 0.153196267 0.196859843 0.423997836 9.011877107 0.065397463 0.074222042 1.18E-07 6.926831139 0.212307686 NKQY(ph)DMHTEVT(ph)TLK ddPTM_K562_Paclitaxel_30min_R1 1 NKQYDMHTEVTTLK 14 1 H0YAT7;Q03001-3 H0YAT7 DST 2 NKQY(0.98)DMHT(0.153)EVT(0.677)T(0.191)LK 45.992 0.03088 0 0 146.43 193.91 0 157.63 0 0 0 0 167.61 TRUE FALSE 0 162.4177226 144.9550223 0 179.1018747 0 0 0 0 133.45099 0 1.217058956 1.086204173 0 1.342079776 0 0 0 0 1 7.060166198 -7.298780149 24.84667295 0.124999885 0.735516515 0.20320328 0.513115831 736.994427 490396.1049 0.172323232 0.1519786 5.03E-08 7.298780149 0.61051663 NKS(ph)TESLQANVQR ddPTM_K562_Paclitaxel_30min_R1 1 NKSTESLQANVQR 13 1 P26373;J3QSB4 P26373 RPL13 60S ribosomal protein L13 1 NKS(0.848)T(0.151)ES(0.001)LQANVQR 87.99 0.013626 22130000 1660.2 1282 2918.6 1976.3 1333.5 1128 1135.5 1616.9 1789.1 2286.9 TRUE FALSE 1683.447922 1421.973095 2181.763333 1849.548964 1515.145276 1328.034962 1350.955197 1479.534253 1960.951049 1820.828525 0.9245505 0.780948385 1.19822559 1.01577328 0.832118596 0.729357512 0.741945317 0.812561003 1.076955365 1 10.83037935 -6.767439871 24.86170826 0.843133842 0.98126195 0.127034911 0.139687394 247.1941096 1024192.65 0.044780101 0.052090957 1.71E-07 6.767439871 0.138128108 NLAANDLSPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 NLAANDLSPSR 11 0 Q96CB9-4;Q96CB9 Q96CB9-4 NSUN4 5-methylcytosine rRNA methyltransferase NSUN4 1 NLAANDLS(0.072)PS(0.928)R 110.25 0.005414 22465000 2641.3 2353 3661.1 3045.4 2515.3 2795 2286.7 2842.8 2278.5 3301.3 TRUE FALSE 2678.286349 2609.908497 2736.810025 2850.081675 2857.926444 3290.654006 2720.589388 2601.286396 2497.360106 2628.493248 1.018943591 0.992929504 1.041208695 1.084302452 1.087286964 1.251916477 1.035037617 0.989649259 0.950110908 1 11.36002031 -8.151734782 4.211736271 0.977566522 1.078680659 0.302191928 0.066693951 0.317145844 9.481048995 0.036891989 0.020378057 7.05E-09 8.151734782 0.101114138 NLALDEAGQRS(ph)TM ddPTM_K562_Paclitaxel_30min_R1 2 NLALDEAGQRSTM 13 1 Q53TN4-3;Q53TN4 Q53TN4-3 CYBRD1 Cytochrome b reductase 1 1 NLALDEAGQRS(0.5)T(0.5)M;NLALDEAGQRS(0.876)T(0.124)M 132.65 0.0008745 170535000 9353.4 9636.3 11991.5 10529.7 9110.3 9270.2 9057.1 10885.2 12177.1 11396 TRUE FALSE 9484.376458 10688.42382 8964.097516 9854.372171 10351.2771 10914.13981 10775.63744 9960.434317 13346.76486 9073.488945 1.045284401 1.177983892 0.987943841 1.086062068 1.140826551 1.202860319 1.187595809 1.097751304 1.470962818 1 13.14744169 -6.965310218 2.583776694 1.197611814 1.07503377 0.175775626 0.119612176 0.489777221 6.627033688 0.039424196 0.043903159 1.08E-07 6.965310218 -0.122578044 NLAS(ph)PEGTLATLGLK ddPTM_K562_Paclitaxel_30min_R1 1 NLASPEGTLATLGLK 15 0 Q8TDJ6-3;Q8TDJ6;Q8TDJ6-2 Q8TDJ6-3 DMXL2 DmX-like protein 2 1 NLAS(0.999)PEGT(0.001)LATLGLK 127.32 0.00015413 5387300 881.02 740.02 1667.2 895 879.57 751.18 841.44 990.32 950.73 1389.3 TRUE FALSE 893.3569982 820.8178862 1246.29474 837.5987059 999.3823252 884.3912259 1001.098847 906.1861346 1042.051864 1106.159897 0.807620128 0.742042708 1.126685883 0.757213047 0.903470039 0.799514815 0.905021823 0.819218032 0.942044515 1 10.11134423 -8.966140568 4.861031273 0.99963227 0.860886448 0.170217995 0.103781194 0.284642235 16.21905836 0.095699644 0.02497812 1.08E-09 8.966140568 -0.138745822 NLATS(ph)ADTPPST(ph)VPGTGK ddPTM_K562_Paclitaxel_30min_R1 2 NLATSADTPPSTVPGTGK 18 0 J3KRA9;Q96Q15-4;Q96Q15-3;Q96Q15-2;Q96Q15 J3KRA9 SMG1 Serine/threonine-protein kinase SMG1 2 NLAT(0.144)S(0.836)ADT(0.309)PPS(0.226)T(0.422)VPGT(0.064)GK;NLAT(0.16)S(0.84)ADT(0.033)PPS(0.153)T(0.813)VPGT(0.001)GK 117.84 0.00036596 22379000 4574.2 4151.8 8545 5386.2 4141.9 3956.5 3306.4 5153.2 5007.3 6495.8 TRUE FALSE 4638.252913 4605.107564 6387.709067 5040.75324 4706.096903 4658.129723 3933.772139 4715.403495 5488.273538 5171.952394 0.896808895 0.890400223 1.235067259 0.974632567 0.90992657 0.900652088 0.760597128 0.911726005 1.061160877 1 12.33649328 -6.651215222 4.947969023 0.910570168 1.011794769 0.089262057 0.114646222 0.45218419 17.76293812 0.035986093 0.046669669 2.23E-07 6.651215222 0.101224601 NLDDGIDDERLR ddPTM_K562_Paclitaxel_30min_R1 3 NLDDGIDDERLR 12 1 H0YAP2;H0YAR2;A0A087WTT1;E7EQV3;E7ERJ7;P11940-2;Q9H361;P11940 H0YAP2 PABPC1;PABPC3 Polyadenylate-binding protein;Polyadenylate-binding protein 1;Polyadenylate-binding protein 3 0 ;; 241.35 4.52E-41 153393000 8746.1 7932.1 11899.8 9443.4 8490.1 7139.5 7598.8 9661 8426.4 11810.7 FALSE TRUE 8868.572384 8798.153503 8895.548315 8837.742591 9646.595359 8405.590081 9040.632632 8840.237748 9235.79337 9403.672857 0.943096652 0.935608207 0.945965311 0.939818167 1.025832726 0.893862452 0.961393784 0.940083506 0.982147456 1 13.19900863 -15 0.176959154 1.202132148 0.940534719 0.194967824 0.031821621 227.5596593 2.177328927 16.05542575 0.101654057 1.00E-15 15 -0.26159743 NLDGLSSCHPGWSAAAQS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 NLDGLSSCHPGWSAAAQSR 19 0 Q15649-2 Q15649-2 1 NLDGLSSCHPGWSAAAQS(1)R 84.829 0.004224 7735200 0 0 80.254 63.57 0 0 0 0 0 0 TRUE FALSE 0 0 59.99288513 59.49290473 0 0 0 0 0 0 0 NLDIERPTYTNLNR ddPTM_K562_Paclitaxel_30min_R1 2 NLDIERPTYTNLNR 14 1 P68363;Q71U36;Q9BQE3;F8VVB9;F8VQQ4;Q71U36-2;F5H5D3;P0DPH8;P0DPH7;P0DPH7-2;P68366;P68366-2;Q6PEY2;Q9NY65-2;Q9NY65;C9J2C0;C9JDS9 P68363 TUBA1B;TUBA1A;TUBA1C;TUBA4A;TUBA3E;TUBA8 Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-3E chain;Tubulin alpha-8 chain 0 ; 129.37 0.0011577 185629000 3447.2 3428.3 3987.9 3616.3 2590.3 2816.5 3373.3 3932.1 3493.1 4469.9 FALSE TRUE 3495.471436 3802.613388 2981.105323 3384.366704 2943.142714 3315.966729 4013.366065 3598.043562 3828.627863 3558.931926 0.98216867 1.068470391 0.837640445 0.950950109 0.826973591 0.931730867 1.127688348 1.010989712 1.075780021 1 11.79722862 -7.736972144 24.53810299 1.054530307 0.930810697 0.400937694 0.072201183 191.4493947 192003.6715 0.028385904 0.021975639 1.83E-08 7.736972144 -0.12371961 NLEELEEKS(ph)TTPPPAEPVSLPQEPPKPR ddPTM_K562_Paclitaxel_30min_R1 1 NLEELEEKSTTPPPAEPVSLPQEPPKPR 28 2 Q9UN86-2 Q9UN86-2 1 NLEELEEKS(0.425)T(0.325)T(0.25)PPPAEPVSLPQEPPKPR 62.696 0.00086594 129290000 3108.5 2011 6454.6 2993.8 2262.3 1805.1 1359.8 2964.2 2366.3 4704.3 TRUE FALSE 3152.028591 2230.567781 4825.056401 2801.791068 2570.463561 2125.20914 1617.814951 2712.372708 2593.593688 3745.561078 0.841537096 0.595523003 1.288206573 0.748029737 0.686269295 0.567394069 0.4319286 0.724156582 0.692444639 1 11.87096613 -6.51360703 24.43669562 0.657470755 0.900629922 0.183876159 0.207269568 503.5201544 1327088.096 0.059623243 0.081510878 3.06E-07 6.51360703 0.243159166 NLGS(ph)INTELQDVQR ddPTM_K562_Paclitaxel_30min_R1 1 NLGSINTELQDVQR 14 0 A0A087X1A9;O75396 A0A087X1A9 SEC22B Vesicle-trafficking protein SEC22b 1 NLGS(1)INTELQDVQR 159.69 0.00011912 23331000 873.11 542.61 631 765.87 651.32 749.77 512.57 668.51 803.49 971.89 TRUE FALSE 885.3362338 601.8539948 471.6962459 716.7505261 740.0408109 882.7311822 609.8274817 611.7159028 880.6688046 773.8182845 1.144113872 0.777771742 0.609569786 0.926251732 0.956349605 1.140747382 0.788075823 0.790516217 1.138082186 1 9.595851008 -6.50143692 24.32800363 0.956511602 0.825663293 0.096554024 0.165869775 1279.18718 1451371.645 0.047949645 0.070285738 3.15E-07 6.50143692 -0.130848308 NLLEDDS(ph)DEEEDFFLR ddPTM_K562_Paclitaxel_30min_R1 3 NLLEDDSDEEEDFFLR 16 0 O75379 O75379 VAMP4 Vesicle-associated membrane protein 4 1 NLLEDDS(1)DEEEDFFLR;NLLEDDS(1)DEEEDFFLR;NLLEDDS(1)DEEEDFFLR 183.73 3.71E-10 147299000 6741 5596.76 8322.6 7009.2 6748.41 5527.12 5533.6 6919.26 4294.3 7955 TRUE FALSE 6835.394798 6207.833184 6221.456697 6559.661284 7667.657694 6507.277127 6583.571713 6331.425674 4706.786702 6333.766633 1.079199029 0.980117131 0.982268065 1.035665136 1.21059997 1.02739452 1.039440209 0.9996304 0.743126006 1 12.628848 -8.565878669 9.848167666 0.870829134 1.04785375 0.41647653 0.083661329 0.392144071 85.39082862 0.056207297 0.021211832 2.72E-09 8.565878669 0.177024615 NLLEDDS(ph)DEEEDFFLRGPSGPR ddPTM_K562_Paclitaxel_30min_R1 2 NLLEDDSDEEEDFFLRGPSGPR 22 1 O75379 O75379 VAMP4 Vesicle-associated membrane protein 4 1 NLLEDDS(0.979)DEEEDFFLRGPS(0.021)GPR;NLLEDDS(0.996)DEEEDFFLRGPS(0.004)GPR 94.08 0.00030043 74030000 914.73 753.26 728.7 965.25 682.57 686.29 350.56 658.36 910.53 653.7 TRUE FALSE 927.5390422 835.5034742 544.7306726 903.3431853 775.54759 807.9938955 417.07693 602.4282086 997.9904749 520.4755812 1.782099057 1.605269304 1.046601785 1.73561108 1.490074882 1.552414608 0.801338132 1.1574572 1.917458784 1 9.023686669 NLLLST(ph)SEEQIEK ddPTM_K562_Paclitaxel_30min_R1 1 NLLLSTSEEQIEK 13 0 P17181-4;P17181-3;P17181 P17181-4 IFNAR1 Interferon alpha/beta receptor 1 1 NLLLS(0.003)T(0.711)S(0.286)EEQIEK 157.37 0.0017177 9953600 2511.6 2178.8 4707 3108.1 2290.2 2285.1 2306.8 2592.3 2813.3 3588.8 TRUE FALSE 2546.770149 2416.688752 3518.659635 2908.760377 2602.164013 2690.330401 2744.503258 2372.067934 3083.530035 2857.40059 0.891289152 0.84576477 1.23141979 1.017974304 0.910675256 0.941530708 0.960489498 0.830148892 1.079138167 1 11.48048759 NLLLSTS(ph)EEQIEK ddPTM_K562_Paclitaxel_30min_R1 1 NLLLSTSEEQIEK 13 0 P17181-4;P17181-3;P17181 P17181-4 IFNAR1 Interferon alpha/beta receptor 1 1 NLLLST(0.029)S(0.971)EEQIEK 202.32 3.46E-07 12335000 2679 2136.2 3992.8 2381.4 1933.9 1997.7 2019.9 2335.3 2251.1 2902.3 TRUE FALSE 2716.514265 2369.43754 2984.768258 2228.667663 2197.329921 2351.964046 2403.16548 2136.901689 2467.328213 2310.809667 1.175568159 1.025371139 1.291654739 0.96445315 0.950891782 1.017809506 1.039966863 0.924741539 1.067733206 1 11.17418272 -6.292780539 24.98900174 0.992924895 1.150315378 0.533744787 0.072062836 496.2805462 395694.2831 0.019274377 0.028591915 5.10E-07 6.292780539 0.157390483 NLNNS(ph)NLFSPVNR ddPTM_K562_Paclitaxel_30min_R1 2 NLNNSNLFSPVNR 13 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3;H0YEN4 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 NLNNS(1)NLFSPVNR;NLNNS(0.988)NLFS(0.012)PVNR 167.61 0.00032792 67356000 1336.9 995.09 1629.2 1461.63 1039.31 1175.07 1364.99 1717.31 1324.77 2121.36 TRUE FALSE 1355.620725 1103.737291 1217.88831 1367.887594 1180.881618 1383.452166 1623.989727 1571.413796 1452.020078 1689.025668 0.802605165 0.653475736 0.721059682 0.809867855 0.699149599 0.819082973 0.961494996 0.930367031 0.859679107 1 10.72197554 -7.562125118 3.762903162 0.931281158 0.736506424 0.751391845 0.054250588 0.11414292 3.445697671 0.021272884 0.016581988 2.74E-08 7.562125118 -0.194774735 NLNNSNLFS(ph)PVNR ddPTM_K562_Paclitaxel_30min_R1 1 NLNNSNLFSPVNR 13 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3;H0YEN4 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 NLNNSNLFS(1)PVNR 179.55 0.00021781 75572000 1474.7 1356.4 1625.2 1746.5 1292.8 1144.8 1284.3 1735.4 842 2008.4 TRUE FALSE 1495.35035 1504.496339 1214.89816 1634.487307 1468.901247 1347.814206 1527.989221 1587.966938 922.8778622 1599.086978 0.935127589 0.940847096 0.75974489 1.022137839 0.918587461 0.84286485 0.95553853 0.993046007 0.577127996 1 10.6430327 NLNNSNLFS(ph)PVNRDS(ph)ENLASPSEYPENGER ddPTM_K562_Paclitaxel_30min_R1 1 NLNNSNLFSPVNRDSENLASPSEYPENGER 30 1 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 2 NLNNS(0.224)NLFS(0.579)PVNRDS(0.236)ENLAS(0.398)PS(0.448)EY(0.115)PENGER 46.412 0.024118 34851000 647.86 411.69 633.26 720.02 597.69 516.45 454.82 655.75 714.22 636.72 TRUE FALSE 656.9320388 456.6397064 473.3856809 673.8411399 679.105497 608.0351562 541.1197207 600.0399444 782.8240222 506.9561145 1.295836109 0.900748 0.933780395 1.32919028 1.339574526 1.199384205 1.067389672 1.183613191 1.544165264 1 8.985717053 -6.262596023 24.99946978 1.240829709 1.02918415 0.207725138 0.173015448 153.4146027 3315894.248 0.047948164 0.075845346 5.46E-07 6.262596023 -0.211645559 NLNNSNLFS(ph)PVNRDSENLASPS(ph)EYPENGER ddPTM_K562_Paclitaxel_30min_R1 1 NLNNSNLFSPVNRDSENLASPSEYPENGER 30 1 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 2 NLNNS(0.188)NLFS(0.616)PVNRDS(0.235)ENLAS(0.402)PS(0.458)EY(0.101)PENGER 48.227 0.014717 35101000 759.87 801.61 766.58 610.48 644.11 704.6 559.09 761.97 943.77 897.16 TRUE FALSE 770.5105244 889.1324907 573.0473981 571.3265452 731.8486869 829.5509169 665.1744089 697.2358924 1034.423325 714.3182995 1.078665526 1.244728703 0.80222976 0.799820676 1.024541423 1.161318305 0.931201692 0.976085721 1.448126593 1 9.480423271 -8.711554735 24.99939717 1.224067381 1.000653645 0.220774652 0.166608602 141.5055684 70914.59967 0.114100056 0.043125576 1.94E-09 8.711554735 -0.223413735 NLNNSNLFS(ph)PVNRDSENLASPSEYPENGER ddPTM_K562_Paclitaxel_30min_R1 3 NLNNSNLFSPVNRDSENLASPSEYPENGER 30 1 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 NLNNS(0.037)NLFS(0.931)PVNRDS(0.023)ENLAS(0.004)PS(0.004)EY(0.002)PENGER;NLNNS(0.005)NLFS(0.994)PVNRDS(0.002)ENLASPSEYPENGER;NLNNS(0.001)NLFS(0.996)PVNRDS(0.003)ENLASPSEYPENGER 104.05 3.61E-09 79594000 291.84 608.46 393.509 496.46 450.42 326.42 189.27 339.35 344.235 478.57 TRUE FALSE 295.9266604 674.8937205 294.1627861 464.6192777 511.7748297 384.3060038 225.1829944 310.5200993 377.3003098 381.0371713 0.776634624 1.771201792 0.772005485 1.219354207 1.343109986 1.008578776 0.590973825 0.814933877 0.990192921 1 8.573787934 -7.522910488 24.99996411 0.828770555 1.188058441 0.223864771 0.286279869 1.555757306 1222411.254 0.103010438 0.080625307 3.00E-08 7.522910488 0.359287886 NLNNSNLFSPVNRDSENLAS(ph)PSEYPENGER ddPTM_K562_Paclitaxel_30min_R1 3 NLNNSNLFSPVNRDSENLASPSEYPENGER 30 1 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 NLNNS(0.004)NLFS(0.082)PVNRDS(0.082)ENLAS(0.393)PS(0.393)EY(0.046)PENGER;NLNNSNLFS(0.001)PVNRDS(0.003)ENLAS(0.758)PS(0.233)EY(0.005)PENGER;NLNNS(0.01)NLFS(0.192)PVNRDS(0.021)ENLAS(0.543)PS(0.205)EY(0.029)PENGER 77.026 3.81E-05 243977000 933.67 637.98 1002.94 1008.36 863.26 543.98 987.43 1142.65 1274.89 1222.11 TRUE FALSE 946.7442606 707.6368139 749.7353928 943.6883029 980.8506271 640.4472151 1174.789688 1045.57475 1397.348881 973.0433112 0.972972374 0.727240818 0.770505675 0.969831756 1.008023606 0.658189834 1.207335454 1.074540813 1.436060312 1 9.926360212 -7.781795027 24.98905353 1.185696048 0.854358819 0.537268245 0.149223919 188.2517308 231099.882 0.060833811 0.041068437 1.65E-08 7.781795027 -0.331337229 NLPIMSTAS(ph)VEIDDALYSR ddPTM_K562_Paclitaxel_30min_R1 1 NLPIMSTASVEIDDALYSR 19 0 A0AVT1;A0AVT1-4;A0AVT1-3 A0AVT1 UBA6 Ubiquitin-like modifier-activating enzyme 6 1 NLPIMST(0.028)AS(0.972)VEIDDALYSR 153.25 8.66E-12 11823000 493.84 429.58 595.02 412 239.65 306.97 335.73 249.54 324.77 355.33 TRUE FALSE 500.7552836 476.4829971 444.7998419 385.576164 272.2943873 361.4068194 399.4330149 228.3400194 355.9656096 282.913551 1.769993986 1.684199981 1.572211159 1.362876266 0.962464988 1.277446125 1.411855365 0.807101741 1.25821336 1 8.14421747 -6.295104001 1.898772972 1.131220545 1.723290705 0.686943684 0.168512312 0.202738528 1.4243438 0.052607995 0.103096173 5.07E-07 6.295104001 0.59207016 NLPVTIISQDFGDAS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 NLPVTIISQDFGDASPR 17 0 Q9BXL7 Q9BXL7 CARD11 Caspase recruitment domain-containing protein 11 1 NLPVT(0.107)IIS(0.06)QDFGDAS(0.833)PR 93.768 0.0055383 0 517.47 369.16 447.69 386.09 337.06 259.55 309.61 454.76 343.61 616.08 TRUE FALSE 524.7161765 409.4661372 334.6651225 361.3279155 382.9732785 305.5775482 368.3568812 416.1252995 376.6152758 490.5225578 1.069708555 0.834754958 0.682262451 0.736618347 0.780745498 0.622963294 0.750947893 0.848330608 0.767783805 1 8.938175673 -11.30087303 23.36262904 0.999999996 0.78055792 0.236465652 0.113405143 0 0 0.11344525 0.027514515 5.00E-12 11.30087303 -0.219442077 NLQDAMQVCR ddPTM_K562_Paclitaxel_30min_R1 1 NLQDAMQVCR 10 0 B4DUR8;P49368-2;P49368 B4DUR8 CCT3 T-complex protein 1 subunit gamma 0 101.46 0.023882 9736400 556.12 760.43 777.44 892.32 635.4 511.8 618.59 805.32 668.45 714.59 FALSE TRUE 563.9073958 843.456319 581.1656567 835.0905891 721.9522374 602.560544 735.9642232 736.9030394 732.6576092 568.9561658 0.991126258 1.482462745 1.021459458 1.467759099 1.268906606 1.059063211 1.293534138 1.295184205 1.287722417 1 9.152173697 NLQPLMRS(ph)PISR ddPTM_K562_Paclitaxel_30min_R1 1 NLQPLMRSPISR 12 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8;Q7Z6E9-4 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 NLQPLMRS(0.99)PIS(0.01)R 93.716 0.010276 230230000 1080.5 1024.6 1184.6 882.32 769.27 947.31 944.19 905.99 1144.1 1053.5 TRUE FALSE 1095.630334 1136.469293 885.5330791 825.7319443 874.0575978 1115.302128 1123.345123 829.0204945 1253.995917 838.7961217 1.306193848 1.354881435 1.055719091 0.984425086 1.042038196 1.329646262 1.339234999 0.988345646 1.494994891 1 9.712176381 -7.265549347 24.93446244 1.236515369 1.145822146 0.049340424 0.178305255 1225.456771 7434597.705 0.063042044 0.057617054 5.43E-08 7.265549347 -0.090693223 NLQPLMRSPIS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 NLQPLMRSPISR 12 1 A0A2R8Y880;Q7Z6E9-2;Q7Z6E9;H3BSK8;Q7Z6E9-4 A0A2R8Y880 RBBP6 E3 ubiquitin-protein ligase RBBP6 1 NLQPLMRS(0.381)PIS(0.619)R 85.976 0.016572 239130000 2028.9 1617.8 2326.8 2076.3 1628.3 1419.4 1641.5 1985.4 1831.5 2163.4 TRUE FALSE 2057.31086 1794.436875 1739.370563 1943.135411 1850.102027 1671.110661 1952.966056 1816.727878 2007.423758 1722.497892 1.194376416 1.041764337 1.009795466 1.128091604 1.074080866 0.970167028 1.133798807 1.054705428 1.165414348 1 10.7502865 -12.00954959 14.49454648 0.889607514 1.080264307 0.12441468 0.066847964 0.037975264 2.50E-05 0.010307211 0.015189232 9.78E-13 12.00954959 0.190656793 NLRDIDEVSSLLR ddPTM_K562_Paclitaxel_30min_R1 2 NLRDIDEVSSLLR 13 1 P50990-2;P50990;P50990-3;H7C4C8 P50990-2 CCT8 T-complex protein 1 subunit theta 0 ; 129.76 0.0036161 66786000 7038.4 6874.1 6511.2 6727.5 6265.9 7066.2 7776.9 7881.5 7614.1 8457.7 FALSE TRUE 7136.959315 7624.637485 4867.36703 6296.028261 7119.421663 8319.291356 9252.526177 7211.91738 8345.468326 6734.016097 1.059836985 1.132257092 0.722802999 0.934958897 1.057232647 1.235413049 1.373998227 1.070968242 1.239300323 1 12.71725145 -7.047810436 3.686916012 1.198901715 0.95933326 0.366700942 0.136603808 0.251163049 6.978096069 0.047385093 0.049543774 8.96E-08 7.047810436 -0.239568455 NLS(ph)FEIK ddPTM_K562_Paclitaxel_30min_R1 1 NLSFEIK 7 0 Q05209-2;Q05209-3;Q05209 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 NLS(1)FEIK 84.198 0.030931 48531000 2578.6 1700.7 4241.1 2864.7 1837 1934.5 1516.2 2253.1 2211.8 3604.7 TRUE FALSE 2614.708356 1886.388177 3170.381852 2680.970964 2087.230501 2277.556413 1803.891035 2061.685092 2424.253273 2870.060161 0.91102911 0.657264333 1.104639511 0.934116643 0.72724277 0.793557029 0.628520287 0.718342117 0.844669845 1 11.48686526 -6.761104376 24.99999993 0.763870772 0.898789484 0.137008625 0.136750674 15.97750161 1192277.976 0.041290092 0.050046313 1.73E-07 6.761104376 0.134918712 NLS(ph)FNELYPSGTLK ddPTM_K562_Paclitaxel_30min_R1 2 NLSFNELYPSGTLK 14 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 NLS(0.985)FNELY(0.014)PSGTLK;NLS(1)FNELYPSGTLK 229.92 7.98E-35 100190000 8043 6154.5 12715.4 7921.1 5450.7 5573.6 5332.7 8351.4 6621.4 10506.6 TRUE FALSE 8155.626815 6826.469123 9505.240008 7413.0761 6193.177621 6561.999703 6344.551986 7641.896442 7257.415055 8365.349153 0.974929637 0.816041148 1.136263393 0.886164578 0.740337015 0.784426278 0.758432418 0.91351793 0.867556742 1 13.03021004 -6.516035316 24.96792067 0.830713145 0.96834764 0.243704451 0.101903501 405.5680015 1479697.59 0.02928411 0.039330527 3.05E-07 6.516035316 0.137634495 NLS(ph)GMAER ddPTM_K562_Paclitaxel_30min_R1 2 NLSGMAER 8 0 C9J494;Q9H000-2;Q9H000 C9J494 MKRN2 Probable E3 ubiquitin-protein ligase makorin-2 1 NLS(1)GMAER;NLS(1)GMAER 92.866 0.015494 78595000 4058.1 3578 5064.6 3860.9 2802.9 3010.7 3436.3 4421.7 3907.8 5293.9 TRUE FALSE 4114.92592 3968.65814 3785.979092 3613.279155 3184.702433 3544.605373 4088.319986 4046.048986 4283.161651 4215.000274 0.976257569 0.941555844 0.898215622 0.857242923 0.755563992 0.840950212 0.969945367 0.95991666 1.016171144 1 12.04131701 -7.850473419 5.919184755 0.985516276 0.875747013 0.4620681 0.057303272 0.227203039 12.07131473 0.027871279 0.01873158 1.41E-08 7.850473419 -0.109769263 NLS(ph)GSTLYPVSNIPR ddPTM_K562_Paclitaxel_30min_R1 2 NLSGSTLYPVSNIPR 15 0 H0YLX2;A0A669KBM4;Q2KHR2-2;Q2KHR2 H0YLX2 RFX7 DNA-binding protein RFX7 1 NLS(0.49)GS(0.311)T(0.199)LYPVSNIPR;NLS(0.899)GS(0.101)TLYPVSNIPR 181.81 1.14E-06 54090000 2635.9 2185.35 3573.9 2914.1 2405.7 2378.7 2237.83 2666.2 2353.5 3027 TRUE FALSE 2672.810732 2423.953903 2671.624744 2727.202669 2733.397069 2800.529046 2662.44656 2439.689668 2579.564191 2410.095738 1.109006041 1.005750047 1.108513949 1.131574412 1.134144601 1.161999086 1.104705725 1.012279151 1.070316067 1 11.23487474 -8.250112912 22.54487489 1.030973212 1.108040927 0.436640583 0.041807991 202.9914979 404048.6598 0.02169905 0.012345278 5.62E-09 8.250112912 0.077067714 NLS(ph)NEELTK ddPTM_K562_Paclitaxel_30min_R1 3 NLSNEELTK 9 0 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 1 NLS(1)NEELTK;NLS(1)NEELTK;NLS(0.769)NEELT(0.231)K 114.24 0.00435 91455800 6115.9 4417.05 10817.3 6340.3 4718.01 4884.7 3975.71 6460.7 5526.97 8160.6 TRUE FALSE 6201.541469 4899.318457 8086.338828 5933.661536 5360.682839 5750.93296 4730.080218 5911.823209 6057.860164 6497.465241 0.954455505 0.754035347 1.244537451 0.91322713 0.825042173 0.885104075 0.727988537 0.909866077 0.932342066 1 12.6656613 -6.515702465 24.77357453 0.868284383 0.980907054 0.111348928 0.129107934 607.0504633 2095630.349 0.037463489 0.050443188 3.05E-07 6.515702465 0.112622671 NLS(ph)PGAVESDVR ddPTM_K562_Paclitaxel_30min_R1 4 NLSPGAVESDVR 12 0 A0A3B3IU78;A0A3B3ISK1;A0A3B3ITV3;A0A3B3ISC6;A0A3B3IT15;A0A3B3IS84;P53621;P53621-2 A0A3B3IU78 COPA Coatomer subunit alpha;Xenin;Proxenin 1 NLS(1)PGAVESDVR;NLS(1)PGAVESDVR;NLS(0.999)PGAVES(0.001)DVR;NLS(1)PGAVESDVR 156.29 0.00012599 281825000 5906.24 5075.47 7648.9 5992.78 5351.2 4796.3 5112.63 5687.37 4784.77 6854.4 TRUE FALSE 5988.945582 5629.626979 5717.840595 5608.429913 6080.124037 5646.856462 6082.724853 5204.192419 5244.368537 5457.469518 1.097385073 1.03154529 1.047709122 1.027661244 1.114092166 1.034702337 1.114568727 0.953590744 0.96095242 1 12.41401645 -8.275376566 24.92426077 0.967953676 1.063796232 0.633603108 0.033119676 483.2318808 864171.9176 0.017235872 0.00834702 5.30E-09 8.275376566 0.095842557 NLS(ph)SDEATNPISR ddPTM_K562_Paclitaxel_30min_R1 3 NLSSDEATNPISR 13 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 NLS(0.9)S(0.032)DEAT(0.068)NPISR;NLS(0.935)S(0.065)DEATNPISR;NLS(0.977)S(0.023)DEATNPISR 188.9 7.03E-86 64239000 1951.94 1905.32 2660.2 2267.71 1874.84 1888.61 1608.23 2349.65 1730.11 2743.94 TRUE FALSE 1979.273182 2113.349281 1988.599609 2122.26923 2130.224949 2223.528466 1913.383247 2150.032566 1896.294796 2184.723522 0.905960485 0.96733031 0.910229413 0.971413183 0.975054705 1.017761947 0.875801092 0.984121123 0.867979301 1 11.093235 -5.247444021 22.80938437 0.951357958 0.905960378 0.075662212 0.048394447 2008.883149 3273846.947 0.011405262 0.20810247 5.66E-06 5.247444021 -0.04539758 NLSDIGWPVFEIPS(ph)PRPSK ddPTM_K562_Paclitaxel_30min_R1 2 NLSDIGWPVFEIPSPRPSK 19 1 F5H1X6;F5H4R1;J3KNB8;F5H538;Q9Y6R4-2;Q9Y6R4 F5H1X6 MAP3K4 Mitogen-activated protein kinase kinase kinase 4 1 NLSDIGWPVFEIPS(0.777)PRPS(0.223)K;NLSDIGWPVFEIPS(0.5)PRPS(0.5)K 117.01 9.59E-05 34080000 2783.5 2192.1 4884.7 3599.9 2844.1 2634.2 2420.6 3938.8 2033.7 4792.9 TRUE FALSE 2822.477588 2431.440891 3651.497072 3369.018527 3231.514571 3101.338384 2879.896214 3604.174355 2229.045972 3816.104349 0.739622749 0.637152622 0.956865101 0.882842349 0.846809803 0.812697479 0.754669147 0.944464308 0.584115571 1 11.89788491 -12.44278219 2.367982598 3.199625419 0.803329952 0.216941364 0.11571031 5171865.417 1102172.622 60690275.04 0.029000881 3.61E-13 12.44278219 -2.396295467 NLVRPPPS(ph)QVHSHCR ddPTM_K562_Paclitaxel_30min_R1 1 NLVRPPPSQVHSHCR 15 1 B4DI24 B4DI24 IL17RC 1 NLVRPPPS(0.963)QVHS(0.037)HCR 70.26 0.029516 0 1167.5 1184.5 1412.2 1272.6 823.42 1308.8 946.34 1026.4 1614.9 1188.6 TRUE FALSE 1183.848602 1313.827716 1055.672644 1190.981132 935.5837446 1540.897304 1125.903075 939.2009134 1770.018361 946.3626676 1.250946009 1.388291995 1.115505377 1.258482792 0.988610156 1.628231286 1.189716283 0.992432337 1.870338319 1 9.886249353 -7.231904653 24.99953653 1.326519184 1.209321684 0.05929978 0.267844771 2687.866941 2275134.883 0.085178375 0.085166505 5.86E-08 7.231904653 -0.117197499 NLVS(ph)PAYCTQESR ddPTM_K562_Paclitaxel_30min_R1 4 NLVSPAYCTQESR 13 0 Q9NUQ3 Q9NUQ3 TXLNG Gamma-taxilin 1 NLVS(1)PAYCTQESR;NLVS(1)PAYCTQESR;NLVS(0.999)PAYCT(0.001)QESR;NLVS(0.995)PAY(0.004)CT(0.001)QESR 132.23 0.00031779 212774000 8911 8156.5 12388.7 10057.1 7950.36 7130.43 6875.8 9064.4 7282.26 11581.1 TRUE FALSE 9035.781493 9047.054254 9261.019464 9412.08262 9033.333633 8394.911644 8180.447156 8294.322642 7981.753611 9220.865463 0.979927701 0.981150228 1.004354689 1.020737441 0.979662231 0.910425564 0.887166957 0.899516718 0.865618704 1 13.17068645 -7.226182842 3.732949782 0.903803295 0.996286077 0.568742542 0.034938391 0.152556391 4.575923374 0.01170204 0.011246348 5.94E-08 7.226182842 0.092482782 NLVSPAYCTQES(ph)REEIPGGEAR ddPTM_K562_Paclitaxel_30min_R1 2 NLVSPAYCTQESREEIPGGEAR 22 1 Q9NUQ3 Q9NUQ3 TXLNG Gamma-taxilin 1 NLVS(0.011)PAY(0.096)CT(0.135)QES(0.759)REEIPGGEAR;NLVS(0.003)PAY(0.052)CT(0.126)QES(0.818)REEIPGGEAR 64.538 0.0081775 172424000 1811.18 1529.41 2139.31 1785.91 1605.74 1596.05 1340.52 1778.29 1518.51 1913.76 TRUE FALSE 1836.542108 1696.396156 1599.214732 1671.369726 1824.468973 1879.087058 1594.876672 1627.213165 1664.36967 1523.734662 1.205289972 1.113314673 1.04953623 1.096890271 1.197366588 1.233211467 1.046689238 1.067911104 1.092296259 1 10.57339598 -8.65831267 0.989277456 1.013856484 1.137734362 0.333220105 0.059963637 0.683121692 1.335636058 0.061258261 0.021815895 2.20E-09 8.65831267 0.123877878 NLVYDQS(ph)PNR ddPTM_K562_Paclitaxel_30min_R1 2 NLVYDQSPNR 10 0 I3L2T8;I3L533;I3L2R9;Q9NXR1;Q9NXR1-1 I3L2T8 NDE1 Nuclear distribution protein nudE homolog 1 1 NLVYDQS(1)PNR;NLVYDQS(1)PNR 103.88 0.0075669 26469000 2514.5 2958.5 3632.8 3084.4 2731.1 2540.5 2522.8 3041.2 2200.35 3620.5 TRUE FALSE 2549.710758 3281.519035 2715.65471 2886.580389 3103.122058 2991.022005 3001.48813 2782.831077 2411.703449 2882.640113 0.884505404 1.138372779 0.94207206 1.001366899 1.076486116 1.037598135 1.041228878 0.965375825 0.836630087 1 11.49317502 -8.522214906 24.98428265 0.912544326 1.020263987 0.221167903 0.074942345 32.22759011 1213210.033 0.045844887 0.017798924 3.00E-09 8.522214906 0.10771966 NLYSDDIPHALR ddPTM_K562_Paclitaxel_30min_R1 2 NLYSDDIPHALR 12 0 P60228;E5RIT4;H0YBR5 P60228 EIF3E Eukaryotic translation initiation factor 3 subunit E 0 ; 136.93 0.00049662 19416900 6904.1 6408.8 9011.8 8028.7 7183.7 6796.7 6572.4 7302.5 6576.3 8874 FALSE TRUE 7000.778701 7108.534457 6736.659633 7513.775117 8162.241561 8001.999315 7819.47859 6682.107044 7207.982999 7065.473929 0.990843469 1.0060945 0.95346182 1.063449557 1.155229167 1.132549549 1.106716785 0.945740811 1.020169782 1 12.78657062 -2.63808599 20.45861417 1.041278014 0.235030202 0 0.069899331 0 0 0.017870821 0 0.002300986 2.63808599 -0.806247812 NMGGPYGGGNYGPGGS(ph)GGSGGYGGR ddPTM_K562_Paclitaxel_30min_R1 5 NMGGPYGGGNYGPGGSGGSGGYGGR 25 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 NMGGPYGGGNYGPGGS(0.984)GGS(0.016)GGYGGR;NMGGPYGGGNYGPGGS(1)GGSGGYGGR;NMGGPYGGGNYGPGGS(0.639)GGS(0.361)GGYGGR;NMGGPYGGGNYGPGGS(0.782)GGS(0.218)GGYGGR;NMGGPYGGGNYGPGGS(0.58)GGS(0.42)GGYGGR 187.04 1.20E-31 459095600 7227.46 7119.32 9908.18 8145.05 6895.92 6735.56 6503.07 7825.3 7304.72 8930.69 TRUE FALSE 7328.666739 7896.631434 7406.737416 7622.662949 7835.261053 7930.016994 7736.993584 7160.491921 8006.370994 7110.610476 1.030666321 1.11054198 1.041645783 1.072012449 1.101911162 1.115237155 1.088091326 1.007015072 1.125975192 1 12.79575771 -11.54418407 4.920796487 0.999560318 1.076933654 0.27532383 0.03748179 0.000175507 1.63E-05 0.035229202 0.008495987 2.86E-12 11.54418407 0.077373336 NMGGPYGGGNYGPGGSGGS(ph)GGYGGR ddPTM_K562_Paclitaxel_30min_R1 3 NMGGPYGGGNYGPGGSGGSGGYGGR 25 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 NMGGPYGGGNYGPGGS(0.272)GGS(0.727)GGYGGR;NMGGPYGGGNYGPGGS(0.427)GGS(0.573)GGYGGR;NMGGPYGGGNYGPGGSGGS(1)GGYGGR 273.01 3.72E-138 513780000 6503.13 6268.25 7450.88 5681.99 5155.26 5652.37 4897.91 5600.02 5237.32 6828.96 TRUE FALSE 6594.193884 6952.638733 5569.813193 5317.572593 5857.493691 6654.738456 5827.262854 5124.263347 5740.387987 5437.214204 1.212789057 1.278713413 1.024387303 0.977995789 1.077296842 1.223924276 1.071736856 0.942442794 1.055759029 1 12.40865195 -5.762658537 24.99990241 1.050500889 1.245751277 0.541369143 0.073219632 24.78973367 508384.3961 0.020775776 0.04750715 1.73E-06 5.762658537 0.195250389 NMMAACDPR ddPTM_K562_Paclitaxel_30min_R1 1 NMMAACDPR 9 0 Q13885;Q9BVA1;P68371;Q5ST81;Q13509-2;Q13509;A0A0B4J269;K7ESM5;Q5SQY0;Q3ZCM7;A0A075B736;Q9BUF5;P04350;Q5JP53;P07437;A6NNZ2 Q13885;Q5JP53;A6NNZ2 TUBB2A;TUBB2B;TUBB4B;TUBB;TUBB3;TUBB6;TUBB8;TUBB4A Tubulin beta-2A chain;Tubulin beta-2B chain;Tubulin beta-4B chain;Tubulin beta-3 chain;Tubulin beta-8 chain;Tubulin beta-6 chain;Tubulin beta-4A chain;Tubulin beta chain;Tubulin beta-8 chain-like protein LOC260334 0 102.71 0.026 15941000 3325 3947.5 4191.9 4330.1 2846.9 3210.9 4002.7 4100.8 4139.1 5275.5 FALSE TRUE 3371.560259 4378.5014 3133.603 4052.386767 3234.695978 3780.308032 4762.19143 3752.411444 4536.679049 4200.350204 0.802685513 1.042413415 0.746033747 0.964773547 0.770101497 0.899998297 1.133760567 0.893356806 1.08007162 1 12.0362939 -7.555475741 18.24561509 1.017766729 0.8700673 0.366381509 0.100856433 11.93732222 6680.148198 0.035770344 0.027710128 2.78E-08 7.555475741 -0.14769943 NMMAACDPRHGCYLT(ph)VAAIFRGRMPMR ddPTM_K562_Paclitaxel_30min_R1 1 NMMAACDPRHGCYLTVAAIFRGRMPMR 27 3 A6NNZ2 A6NNZ2 Tubulin beta-8 chain-like protein LOC260334 1 NMMAACDPRHGCY(0.03)LT(0.97)VAAIFRGRMPMR 40.404 0.025978 41264000 57.385 0 0 0 0 0 0 0 0 0 TRUE FALSE 58.18856705 0 0 0 0 0 0 0 0 0 0 NMPGLSAATLASLGGTSS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 NMPGLSAATLASLGGTSSR 19 0 Q32MZ4-3;Q32MZ4-2;Q32MZ4;C9JTC6;Q32MZ4-4 Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 NMPGLSAATLASLGGT(0.011)S(0.011)S(0.978)R 134.58 2.28E-09 35412000 2336.2 2026.5 2290.7 1956.3 1737.1 1785.9 2275.6 2796 1693.9 3513.2 TRUE FALSE 2368.914008 2247.760123 1712.384454 1830.831674 1973.722429 2102.60429 2707.383221 2558.462348 1856.606664 2797.207912 0.846885209 0.803572775 0.612176323 0.654521127 0.705604478 0.751679659 0.967887732 0.914648617 0.663735669 1 11.44977178 -7.613414208 6.811558206 0.878790458 0.71977843 0.353029185 0.104616833 0.265341615 16.77929371 0.041444146 0.031967351 2.44E-08 7.613414208 -0.159012028 NMQNVEHVPLSLDR ddPTM_K562_Paclitaxel_30min_R1 1 NMQNVEHVPLSLDR 14 0 P20618 P20618 PSMB1 Proteasome subunit beta type-1 0 105.19 0.0092472 10598000 2008 2308 3039.2 2701.3 1926.8 1995 2214.6 2491.5 2011.8 2834.4 FALSE TRUE 2036.118195 2559.995245 2271.916372 2528.050709 2189.262781 2348.785239 2634.808789 2279.831524 2205.042379 2256.747724 0.902235626 1.134373691 1.006721464 1.12021857 0.970096373 1.040783254 1.167524735 1.01022879 0.977088558 1 11.14002944 -8.509596741 24.6602267 0.990249038 1.052707427 0.097883611 0.075101046 1120.458037 2080336.97 0.041786903 0.018602664 3.09E-09 8.509596741 0.062458388 NMS(ph)VHLSPCFR ddPTM_K562_Paclitaxel_30min_R1 3 NMSVHLSPCFR 11 0 M0R1H5;M0QZC5;P62280 M0R1H5 RPS11 40S ribosomal protein S11 1 NMS(0.988)VHLS(0.012)PCFR;NMS(0.99)VHLS(0.01)PCFR;NMS(0.999)VHLS(0.001)PCFR 115.24 0.0031271 30468100 8391.3 7762.9 10760.7 9341.5 7493.9 8147.7 7541 8811.5 5574 10491.3 TRUE FALSE 8508.804089 8610.479674 8044.028198 8742.378001 8514.696053 9592.580196 8971.865383 8062.908075 6109.407605 8353.167301 1.018632069 1.030804169 0.962991391 1.046594386 1.019337426 1.1483764 1.074067484 0.965251597 0.731388153 1 13.02810762 -8.528611002 24.92528492 0.8599026 1.041065464 0.472479479 0.074802944 122.6512919 533298.9262 0.048620405 0.018497545 2.96E-09 8.528611002 0.181162864 NMTVEQLLTGS(ph)PT(ph)SPTVEPEKPTR ddPTM_K562_Paclitaxel_30min_R1 1 NMTVEQLLTGSPTSPTVEPEKPTR 24 1 Q9C0C9;K7ES11 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 2 NMTVEQLLT(0.001)GS(0.995)PT(0.731)S(0.249)PT(0.023)VEPEKPTR 70.391 0.0051674 14434000 1229.7 799.61 1550.4 1261 833.15 1064.4 761.06 1171.1 997.79 1244.2 TRUE FALSE 1246.919594 886.9141239 1158.982345 1180.125104 946.6391353 1253.156395 905.467162 1071.607745 1093.632188 990.631357 1.258712017 0.895301888 1.169943124 1.191285836 0.955591733 1.265007802 0.914030386 1.081742202 1.103974935 1 9.952204478 -7.779465309 24.99987637 1.03174883 1.109984151 0.127549861 0.122010032 647.5191871 898024.931 0.048795346 0.032972457 1.66E-08 7.779465309 0.078235321 NMTVEQLLTGS(ph)PTSPTVEPEKPTR ddPTM_K562_Paclitaxel_30min_R1 2 NMTVEQLLTGSPTSPTVEPEKPTR 24 1 Q9C0C9;K7ES11 Q9C0C9 UBE2O E2/E3 hybrid ubiquitin-protein ligase UBE2O 1 NMTVEQLLTGS(0.956)PT(0.043)SPTVEPEKPTR;NMTVEQLLT(0.006)GS(0.993)PT(0.001)SPTVEPEKPTR 138.42 3.73E-16 26576000 2611.5 2515.9 5202.9 3510.4 2521.2 2383.4 1792.67 3168.3 3100.9 4006.1 TRUE FALSE 2648.069057 2790.59447 3889.363546 3285.258656 2864.630124 2806.062525 2132.819774 2899.133139 3398.7553 3189.654621 0.830205578 0.874889228 1.219368242 1.029973162 0.89810041 0.879738674 0.668667937 0.908917574 1.0655559 1 11.6391845 -6.828873514 6.672549361 0.885152246 0.996753315 0.075213146 0.13658057 0.489263876 38.30693007 0.045450431 0.051941574 1.48E-07 6.828873514 0.111601069 NNADT(ph)GR ddPTM_K562_Paclitaxel_30min_R1 1 NNADTGR 7 0 Q8IUE0;Q8IUE1 Q8IUE0 TGIF2LY;TGIF2LX Homeobox protein TGIF2LY;Homeobox protein TGIF2LX 1 NNADT(1)GR 97.635 0.028945 648280 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 NNCPFS(ph)ADENYRPLAK ddPTM_K562_Paclitaxel_30min_R1 1 NNCPFSADENYRPLAK 16 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 NNCPFS(1)ADENYRPLAK 111.57 0.00071124 45463000 1665 1264.6 3206.5 1637.9 1170.9 1063.1 923.67 1478.6 1458.2 1969.1 TRUE FALSE 1688.315137 1402.673305 2396.979418 1532.852425 1330.396404 1251.625858 1098.931561 1352.983701 1598.266625 1567.796339 1.076871463 0.894678262 1.528884433 0.977711445 0.848577312 0.798334469 0.700940252 0.862984348 1.019435105 1 10.61452245 -6.515340573 23.82814007 0.858152748 1.158548032 0.375160631 0.169702398 194.1032352 613560.9522 0.049851895 0.06737429 3.05E-07 6.515340573 0.300395284 NNQNLT(ph)S(ph)TK ddPTM_K562_Paclitaxel_30min_R1 1 NNQNLTSTK 9 0 E9PHI0;Q96K78 E9PHI0 ADGRG7;GPR128 Probable G-protein coupled receptor 128 2 NNQNLT(0.998)S(0.713)T(0.289)K 97.779 0.020391 9295000 528.07 703.03 959.72 811.96 885.48 733.66 564.74 753.94 656.45 854.86 TRUE FALSE 535.4646092 779.7891929 717.4268163 759.8845198 1006.097367 863.7642999 671.8964669 689.8880911 719.5049556 680.6390628 0.786708607 1.145672113 1.054048843 1.116428018 1.478165774 1.269048968 0.987155313 1.013588742 1.05710206 1 9.410746142 -7.78858104 24.772228 1.015593854 1.152024226 0.125065137 0.1634638 455.2400332 415493.5453 0.0736407 0.049663015 1.63E-08 7.78858104 0.136430371 NNS(ph)FTAPSTVGK ddPTM_K562_Paclitaxel_30min_R1 1 NNSFTAPSTVGK 12 0 A0A494C0Q6;A0A494C0K5;A0A494C0W0;O95453-4;O95453-2;O95453-3;O95453 A0A494C0Q6 PARN Poly(A)-specific ribonuclease PARN 1 NNS(0.995)FT(0.005)APSTVGK 88.706 0.020004 0 2164.7 1387.1 3212.7 1777 1170.3 1515.1 1047.9 2429.1 1228.1 2588.5 TRUE FALSE 2195.012479 1538.548269 2401.614151 1663.031174 1329.714673 1783.781712 1246.733555 2222.732793 1346.064492 2060.962279 1.065042529 0.746519373 1.165287776 0.806919753 0.645191174 0.865509151 0.604927886 1.07849271 0.653124274 1 11.00910238 -6.473429397 24.98934701 0.797398806 0.970773114 0.186650811 0.173994201 627.4509603 317083.2637 0.045924328 0.068115397 3.36E-07 6.473429397 0.173374308 NNS(ph)GEEFDCAFR ddPTM_K562_Paclitaxel_30min_R1 2 NNSGEEFDCAFR 12 0 Q08J23-3;Q08J23-2;Q08J23 Q08J23-3 NSUN2 tRNA (cytosine(34)-C(5))-methyltransferase 1 NNS(1)GEEFDCAFR;NNS(1)GEEFDCAFR 137.39 0.00020214 30682000 1697.38 1814.99 2168.51 1892.14 1536.06 1562.5 1348.78 1669.34 1530.73 2374.33 TRUE FALSE 1721.148557 2013.156746 1621.042831 1770.786609 1745.297378 1839.587436 1604.703964 1527.519147 1677.763456 1890.440243 0.910448539 1.064914246 0.857494881 0.936705943 0.923222717 0.973100019 0.848851991 0.808022974 0.887498805 1 10.88450653 -7.764862433 24.99960754 0.87009535 0.944545312 0.133783725 0.067854915 139.3500118 1017697.138 0.02671974 0.018836559 1.72E-08 7.764862433 0.074449961 NNS(ph)LSKPDDSTEAHEGDPTNGSGEQSK ddPTM_K562_Paclitaxel_30min_R1 1 NNSLSKPDDSTEAHEGDPTNGSGEQSK 27 1 Q9NSI8;A0A2R8Y4K8;Q9NSI8-3 Q9NSI8 SAMSN1 SAM domain-containing protein SAMSN-1 1 NNS(0.444)LS(0.444)KPDDS(0.062)T(0.051)EAHEGDPTNGSGEQSK 57.316 0.0026021 8437300 1200.5 1025.1 3377.2 1733.6 995.21 1003.9 829.17 1419.1 1088.8 2171.7 TRUE FALSE 1217.310704 1137.023885 2524.584091 1622.414655 1130.774451 1181.92757 986.5006789 1298.538597 1193.384105 1729.106348 0.704011471 0.65757892 1.46005137 0.938296628 0.653964664 0.683548222 0.570526318 0.750988277 0.690173919 1 10.75581089 -6.73767042 10.22313879 0.702637547 0.957238699 0.171030053 0.227639424 0.61575253 254.7540302 0.069770006 0.088898674 1.83E-07 6.73767042 0.254601152 NNS(ph)PPTVGAFGHTR ddPTM_K562_Paclitaxel_30min_R1 1 NNSPPTVGAFGHTR 14 0 F5H1D4;Q86XL3-3;Q86XL3 F5H1D4 ANKLE2 Ankyrin repeat and LEM domain-containing protein 2 1 NNS(1)PPTVGAFGHTR 135.95 1.94E-05 45068000 1944.8 1381 2165.2 1763.7 1299.4 1719 1092.2 1467.1 1432.8 1857.7 TRUE FALSE 1972.0332 1531.78225 1618.568481 1650.584176 1476.400279 2023.840514 1299.439248 1342.460698 1570.426842 1479.09972 1.333265887 1.03561797 1.094293007 1.1159384 0.998174943 1.368292135 0.878533902 0.907620142 1.061745074 1 10.53050361 -7.801729295 24.99998388 0.954276408 1.140035811 0.382835896 0.120288698 171.0434782 106131.325 0.048835122 0.032925069 1.58E-08 7.801729295 0.185759402 NNSLS(ph)KPDDSTEAHEGDPTNGSGEQSK ddPTM_K562_Paclitaxel_30min_R1 1 NNSLSKPDDSTEAHEGDPTNGSGEQSK 27 1 Q9NSI8;A0A2R8Y4K8;Q9NSI8-3 Q9NSI8 SAMSN1 SAM domain-containing protein SAMSN-1 1 NNS(0.09)LS(0.303)KPDDS(0.303)T(0.303)EAHEGDPTNGSGEQSK 80.082 2.18E-05 10901000 1296.3 1032.8 4087.2 1857.6 1180.7 925.66 750.35 1507.5 1264.1 1972.9 TRUE FALSE 1314.452199 1145.564597 3055.33581 1738.46185 1341.531329 1089.812804 892.7249954 1379.428465 1385.522453 1570.821897 0.836792638 0.729277201 1.945055525 1.106721172 0.854031467 0.693785085 0.568317132 0.878157141 0.88203663 1 10.6173039 -6.764119601 4.334177275 0.783914187 1.185776698 0.213034265 0.320963336 0.307089125 13.63740345 0.104612531 0.127912141 1.72E-07 6.764119601 0.401862511 NNSQIASGQNQPQAAAGSHQLS(ph)MGQPHNAAGPSPHTLR ddPTM_K562_Paclitaxel_30min_R1 1 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLR 38 0 Q68EM7-7;Q68EM7-3;Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7 Q68EM7-7 ARHGAP17 Rho GTPase-activating protein 17 1 NNSQIASGQNQPQAAAGS(0.152)HQLS(0.637)MGQPHNAAGPS(0.111)PHT(0.101)LR 57.397 0.00019774 29263000 2030 1769.6 2532.3 2158 1800.7 1851 1703.1 2415.4 1595.6 2830.3 TRUE FALSE 2058.426263 1962.810912 1892.989546 2019.595539 2045.985826 2179.248861 2026.254334 2210.196694 1748.864509 2253.483306 0.913441984 0.87101196 0.840028209 0.896210561 0.907921448 0.967057912 0.899165451 0.980791243 0.776071651 1 11.13794105 -6.680116185 3.05900651 0.922602989 0.87401817 0.109681763 0.060277853 0.556968663 10.48616858 0.018029664 0.023589387 2.09E-07 6.680116185 -0.048584819 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPS(ph)PHTLR ddPTM_K562_Paclitaxel_30min_R1 2 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLR 38 0 Q68EM7-7;Q68EM7-3;Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7 Q68EM7-7 ARHGAP17 Rho GTPase-activating protein 17 1 NNSQIASGQNQPQAAAGS(0.341)HQLS(0.06)MGQPHNAAGPS(0.522)PHT(0.076)LR;NNSQIASGQNQPQAAAGS(0.002)HQLS(0.015)MGQPHNAAGPS(0.879)PHT(0.103)LR 78.36 9.09E-08 49913000 4287.5 3572.8 4688.7 4289.8 3373.4 3550.9 3833.9 4348.3 2965.4 5149.9 TRUE FALSE 4347.538228 3962.890386 3504.979696 4014.671428 3832.914192 4180.602258 4561.362511 3978.884774 3250.23992 4100.347553 1.060285298 0.966476704 0.854800636 0.979105155 0.93477788 1.019572659 1.112433142 0.970377443 0.79267425 1 12.00153049 -8.55058163 24.98213467 0.891399902 0.986424948 0.172429254 0.080260086 377.6277506 340533.123 0.055457508 0.020961899 2.81E-09 8.55058163 0.095025047 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPS(ph)PHTLRR ddPTM_K562_Paclitaxel_30min_R1 2 NNSQIASGQNQPQAAAGSHQLSMGQPHNAAGPSPHTLRR 39 1 Q68EM7-7;Q68EM7-3;Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7 Q68EM7-7 ARHGAP17 Rho GTPase-activating protein 17 1 NNSQIAS(0.002)GQNQPQAAAGS(0.004)HQLS(0.004)MGQPHNAAGPS(0.735)PHT(0.255)LRR;NNSQIAS(0.001)GQNQPQAAAGS(0.003)HQLS(0.008)MGQPHNAAGPS(0.83)PHT(0.158)LRR 59.386 4.10E-05 188379000 3684.2 3182.3 4410 3383.8 2585.3 2954.1 3421.6 3839.4 3484.1 4828.8 TRUE FALSE 3735.790167 3529.754276 3296.640958 3166.778213 2937.461629 3477.968157 4070.830738 3513.219005 3818.763372 3844.687909 0.971675791 0.918086034 0.857453462 0.823676274 0.764031229 0.90461651 1.058819554 0.913785225 0.99325705 1 11.90865078 -7.53663891 20.82989238 0.983915147 0.863631606 0.481562303 0.060883934 31.35936004 47467.94718 0.024730513 0.019180267 2.91E-08 7.53663891 -0.120283541 NNTAAET(ph)EDDESDGEDRGGGT(ph)SGSLRR ddPTM_K562_Paclitaxel_30min_R1 1 NNTAAETEDDESDGEDRGGGTSGSLRR 27 2 Q6KC79 Q6KC79 NIPBL Nipped-B-like protein 2 NNT(0.03)AAET(0.965)EDDES(0.009)DGEDRGGGT(0.396)S(0.357)GS(0.243)LRR 58.001 0.001497 7579600 1377.4 1017.9 1577.6 1474.6 1064.7 1131.5 1034.8 1243.7 1936.5 2106.9 TRUE FALSE 1396.68785 1129.037764 1179.315368 1380.025756 1209.730166 1332.155638 1231.147898 1138.039922 2122.509478 1677.512623 0.832594539 0.673042783 0.703014303 0.82266192 0.721145194 0.794125552 0.733912747 0.678409155 1.265271836 1 10.71210791 -8.755396834 24.99999832 1.132635965 0.74415401 0.791506541 0.0796072 50.52395733 209040.7626 0.05274556 0.018788988 1.76E-09 8.755396834 -0.388481956 NNTAAETEDDES(ph)DGEDRGGGTSGSLR ddPTM_K562_Paclitaxel_30min_R1 2 NNTAAETEDDESDGEDRGGGTSGSLR 26 1 Q6KC79 Q6KC79 NIPBL Nipped-B-like protein 1 NNTAAET(0.006)EDDES(0.991)DGEDRGGGT(0.002)S(0.001)GSLR;NNT(0.001)AAET(0.05)EDDES(0.943)DGEDRGGGT(0.004)S(0.002)GSLR 70.451 0.00063387 32901000 1156.32 886.54 1275.42 1096.19 1132.72 908.17 1111.27 1189.25 898.44 1272.53 TRUE FALSE 1172.512048 983.3354353 953.4244468 1025.88528 1287.015641 1069.221198 1322.127681 1088.215789 984.7391763 1013.187687 1.157250588 0.970536306 0.94101464 1.01253232 1.270263799 1.055304176 1.30491882 1.074051533 0.971921776 1 9.984685735 -4.933039422 19.33000966 1.076102973 2.756154424 0.044740991 0.118562941 753.0284637 273274.0971 0.030129004 13778.06512 1.17E-05 4.933039422 1.680051451 NNTAAETEDDES(ph)DGEDRGGGTSGVR ddPTM_K562_Paclitaxel_30min_R1 2 NNTAAETEDDESDGEDRGGGTSGVR 25 1 A0A590UJS4;Q6KC79-2 A0A590UJS4 NIPBL Nipped-B-like protein 1 NNTAAET(0.003)EDDES(0.976)DGEDRGGGT(0.016)S(0.005)GVR;NNTAAET(0.001)EDDES(0.998)DGEDRGGGT(0.001)SGVR 85.274 0.00011172 135996000 1070.13 1322.03 2140.3 1387.43 1285 1358.47 1083.5 1409.8 890.29 1278.11 TRUE FALSE 1085.115122 1466.373706 1599.954794 1298.44645 1460.038755 1599.375581 1289.088469 1290.02869 975.8063324 1017.63048 1.066315468 1.440968735 1.572235526 1.275950824 1.434743537 1.571666348 1.26675497 1.267678902 0.958900457 1 9.990998073 -8.578333771 1.967959673 0.968118633 1.394793547 0.534530807 0.144330321 0.258331023 1.814586832 0.127752308 0.040259271 2.64E-09 8.578333771 0.426674914 NNTAAETEDDES(ph)DGEDRGGGTSGVRR ddPTM_K562_Paclitaxel_30min_R1 2 NNTAAETEDDESDGEDRGGGTSGVRR 26 2 A0A590UJS4;Q6KC79-2 A0A590UJS4 NIPBL Nipped-B-like protein 1 NNTAAET(0.005)EDDES(0.666)DGEDRGGGT(0.164)S(0.164)GVRR;NNTAAET(0.003)EDDES(0.989)DGEDRGGGT(0.004)S(0.004)GVRR 65.197 0.0010074 51209000 4483.5 4185.4 6136.1 5129.6 4316.9 4243.8 3612 4285.9 3847.4 4695 TRUE FALSE 4546.282833 4642.376126 4586.965665 4800.610415 4904.934866 4996.378344 4297.358144 3921.786043 4216.959961 3738.156423 1.216183144 1.24188921 1.227066272 1.284218709 1.312126704 1.33658889 1.149592916 1.049123043 1.128085474 1 11.86811122 -7.968510711 4.610843301 1.070649179 1.268641088 0.811442863 0.045799285 0.088610852 4.489094607 0.021648661 0.013793594 1.08E-08 7.968510711 0.197991909 NPAMMQEMIR ddPTM_K562_Paclitaxel_30min_R1 1 NPAMMQEMIR 10 0 Q9H347 Q9H347 UBQLN3 Ubiquilin-3 0 59.908 0.028884 21713000 0 0 0 0 0 0 0 0 0 0 FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 NPEAALS(ph)PTFR ddPTM_K562_Paclitaxel_30min_R1 1 NPEAALSPTFR 11 0 B4E349;F5H6D8;B4DTN4;Q86U44 B4E349 METTL3 N6-adenosine-methyltransferase 70 kDa subunit 1 NPEAALS(0.943)PT(0.057)FR 105.95 0.0062969 16117000 951.53 808.81 1092.2 905.63 1015.2 834.58 655.65 908.85 695.1 1100.4 TRUE FALSE 964.8543557 897.118611 816.4606018 847.5469453 1153.487427 982.5810449 780.0561648 831.6375196 761.8674608 876.137876 1.101258583 1.023946842 0.931885978 0.967367087 1.316559253 1.121491345 0.890334942 0.949208501 0.869574849 1 9.775014111 -7.764860616 24.99682447 0.92304693 1.073967569 0.335450387 0.103170982 118.2857277 864224.7463 0.046048653 0.032467054 1.72E-08 7.764860616 0.150920639 NPEAALSPT(ph)FR ddPTM_K562_Paclitaxel_30min_R1 1 NPEAALSPTFR 11 0 B4E349;F5H6D8;B4DTN4;Q86U44 B4E349 METTL3 N6-adenosine-methyltransferase 70 kDa subunit 1 NPEAALS(0.338)PT(0.662)FR 110.92 0.012666 16698000 1241.9 978.22 1316.5 1139.7 763.58 1070.7 859.39 1192 787.8 1262.3 TRUE FALSE 1259.290432 1085.025368 984.1332927 1066.604743 867.5925235 1260.573612 1022.454766 1090.73216 863.47171 1005.042567 1.252972235 1.079581506 0.979195633 1.061253302 0.86323958 1.254248977 1.017324837 1.085259665 0.859139442 1 9.973040891 -5.306761992 3.009280494 1.022895955 1.278781914 0.308706678 0.106742233 0.407125014 5.718262068 0.026406116 0.235607958 4.93E-06 5.306761992 0.255885959 NPPGFAFVEFEDPRDAADAVR ddPTM_K562_Paclitaxel_30min_R1 1 NPPGFAFVEFEDPRDAADAVR 21 1 A0A087X2D0;P84103-2;P84103 A0A087X2D0 SRSF3 Serine/arginine-rich splicing factor 3 0 85.203 0.010531 9784500 260.57 310.14 295.49 390.71 240.11 181.26 331.18 296.94 352.87 346.18 FALSE TRUE 264.2187839 344.002134 220.8898949 365.6516094 272.8170471 213.403916 394.0196761 271.7130936 386.7647402 275.628326 0.958605336 1.248065244 0.801404914 1.326611146 0.989800472 0.774245228 1.429532595 0.985795247 1.40321115 1 8.106580349 -7.767464744 24.99998779 1.203450929 1.030094495 0.160178873 0.20969239 296.8376318 1231601.33 0.081715671 0.056697393 1.71E-08 7.767464744 -0.173356434 NPQMPQYSS(ph)PQPGSALSPR ddPTM_K562_Paclitaxel_30min_R1 1 NPQMPQYSSPQPGSALSPR 19 0 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;A0A087WUV6 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 NPQMPQYS(0.139)S(0.537)PQPGS(0.11)ALS(0.214)PR 156 9.55E-12 22038000 752.22 813.04 1410.5 1239.5 909.65 815.66 905.31 923.64 659.03 1138.5 TRUE FALSE 762.7534008 901.8104567 1054.40183 1160.004018 1033.559731 960.3058486 1077.087846 845.1710168 722.3327761 906.4730751 0.8414518 0.994856308 1.16319156 1.279689436 1.140199041 1.059387063 1.188218245 0.932372996 0.796860708 1 9.824120358 -8.401232948 5.611738626 0.888295995 1.100906737 0.330725542 0.121002893 0.263838742 10.90645691 0.073209232 0.034027835 3.97E-09 8.401232948 0.212610742 NPQMPQYSSPQPGS(ph)ALSPR ddPTM_K562_Paclitaxel_30min_R1 1 NPQMPQYSSPQPGSALSPR 19 0 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;A0A087WUV6 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 NPQMPQYSS(0.001)PQPGS(0.879)ALS(0.119)PR 166.38 3.30E-12 22715000 1119.5 1068.5 1237.3 1316.9 1130.3 1332.7 971.31 998.51 986.91 1548 TRUE FALSE 1135.176454 1185.162443 924.9283123 1232.439928 1284.265996 1569.035633 1155.611002 913.680343 1081.707115 1232.51675 0.921023145 0.961579178 0.750438736 0.999937671 1.041986647 1.273033922 0.937602675 0.741312719 0.877640904 1 10.26739154 -12.38514281 2.161799929 1.35649211 0.947634084 0.012829067 0.143136272 13119916.61 1513789.636 22952163.77 0.042483071 4.12E-13 12.38514281 -0.408858027 NPQMPQYSSPQPGSALS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 6 NPQMPQYSSPQPGSALSPR 19 0 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;A0A087WUV6 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 NPQMPQYSSPQPGSALS(1)PR;NPQMPQYSSPQPGS(0.269)ALS(0.731)PR;NPQMPQYSSPQPGS(0.003)ALS(0.997)PR;NPQMPQYSSPQPGS(0.015)ALS(0.985)PR;NPQMPQY(0.001)S(0.003)S(0.003)PQPGS(0.02)ALS(0.974)PR;NPQMPQYSSPQPGS(0.017)ALS(0.983)PR 211.17 6.14E-24 257758900 7981.9 7089.65 9776.4 8994.46 6587.03 6717.97 6911.28 8003.2 7001.29 9285.2 TRUE FALSE 8093.671226 7863.721963 7308.226907 8417.595593 7484.295005 7909.307655 8222.659301 7323.278206 7673.795187 7392.871143 1.094794035 1.063689845 0.98855056 1.138609808 1.012366489 1.069856014 1.112241664 0.99058648 1.037999316 1 12.85191905 -8.279401161 24.97422065 1.010719672 1.065899924 0.283171515 0.042898578 1171.252588 1628511.239 0.022585675 0.010882039 5.26E-09 8.279401161 0.055180252 NPQNSSQS(ph)ADGLR ddPTM_K562_Paclitaxel_30min_R1 1 NPQNSSQSADGLR 13 0 P0DN76;Q01081 P0DN76 U2AF1 Splicing factor U2AF 35 kDa subunit 1 NPQNS(0.028)S(0.087)QS(0.885)ADGLR 118.71 0.0023057 3645700 335.39 423.68 551.42 385.44 420.68 387.71 336.83 398 262.57 566.59 TRUE FALSE 340.0864948 469.9388152 412.2072011 360.7196036 477.9837382 456.4649248 400.7417341 364.1874158 287.7910217 451.118647 0.753873725 1.041718888 0.913744541 0.799611379 1.059552163 1.011851157 0.888328906 0.807298519 0.637949736 1 8.817363111 -8.17394919 3.679666836 0.791016739 0.934915085 0.137410277 0.123329286 0.381383846 9.666229098 0.062776842 0.033402742 6.70E-09 8.17394919 0.143898346 NPRQPTRTS(ph)S(ph)ES(ph)IY(ph)S(ph)R ddPTM_K562_Paclitaxel_30min_R1 3 NPRQPTRTSSESIYSR 16 2 A0A3B3IS55 A0A3B3IS55 5 NPRQPTRT(0.041)S(0.961)S(0.999)ES(1)IY(1)S(1)R;NPRQPTRT(0.016)S(0.989)S(0.996)ES(0.999)IY(1)S(1)R;NPRQPTRT(0.01)S(0.998)S(0.999)ES(0.997)IY(0.998)S(0.998)R 67.644 0.015222 19469600 1561.87 1489.97 2056.82 1867.03 1915.49 1811.68 1346.32 1990.7 1252.75 2114.57 TRUE FALSE 1583.740999 1652.649963 1537.550353 1747.287052 2176.412168 2132.956011 1601.777192 1821.577609 1373.082235 1683.619473 0.940676337 0.981605398 0.913241013 1.037815896 1.292698381 1.26688723 0.951389086 1.0819414 0.815553786 1 10.71735039 -6.512438561 24.82146465 1.084370061 0.953269189 0.139232461 0.132795827 899.6955185 2139021.982 0.040947158 0.056529191 3.07E-07 6.512438561 -0.131100872 NPSKHYVYIINVT(ph)WSDS(ph)T(ph)S(ph)QTIY(ph)RR ddPTM_K562_Paclitaxel_30min_R1 1 NPSKHYVYIINVTWSDSTSQTIYRR 25 2 Q5TCZ1-3;Q5TCZ1 Q5TCZ1-3 SH3PXD2A SH3 and PX domain-containing protein 2A 5 NPS(0.011)KHY(0.039)VY(0.039)IINVT(0.906)WS(0.085)DS(0.745)T(0.745)S(0.745)QT(0.744)IY(0.941)RR 45.011 0.021258 273100000 1094.4 1103.7 1312.7 1337 1122.1 978.67 1443 1620.5 832.34 1705.5 TRUE FALSE 1109.724977 1224.205698 981.2926497 1251.250804 1274.949017 1152.223383 1716.801717 1482.82841 912.289976 1357.918164 0.817225225 0.901531279 0.72264491 0.921447873 0.938899745 0.848521961 1.26428953 1.091986579 0.671829864 1 10.40718082 -6.888974078 1.45922385 1.000262109 0.826461779 0.162825148 0.150728374 0.708098144 3.129010031 0.060950133 0.07500856 1.29E-07 6.888974078 -0.17380033 NQGETPTTEVPAPFFLPAS(ph)LSANNTPTRR ddPTM_K562_Paclitaxel_30min_R1 1 NQGETPTTEVPAPFFLPASLSANNTPTRR 29 1 Q9UJX2-3;Q9UJX2 Q9UJX2-3 CDC23 Cell division cycle protein 23 homolog 1 NQGETPTTEVPAPFFLPAS(0.381)LS(0.381)ANNT(0.118)PT(0.118)RR 55.049 0.0034632 7777900 498.72 513.15 791.8 519.34 475.6 264.68 527.13 549.14 412.27 609.18 TRUE FALSE 505.7036187 569.1774524 591.9002971 486.0318569 540.384772 311.6172817 627.1501657 502.4871294 451.8703756 485.0287816 1.042626 1.173492118 1.220340564 1.002068074 1.11412929 0.642471733 1.293016393 1.035994457 0.931636209 1 8.921926549 -6.280766291 23.43533944 1.005981657 1.14828681 0.14598508 0.158017306 688.3074336 834622.9782 0.044096316 0.065548991 5.24E-07 6.280766291 0.142305153 NQGGYGGS(ph)SSSSSYGSGR ddPTM_K562_Paclitaxel_30min_R1 1 NQGGYGGSSSSSSYGSGR 18 0 F8W6I7;P09651-3;P09651-2;P09651;H0YH80;A0A2R8Y4L2 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 NQGGYGGS(0.499)S(0.499)S(0.001)SSSYGSGR 279.12 4.97E-134 58434000 1739.3 1596.5 1883.9 1840.6 1257.9 1535 1730.6 1815.6 1722.9 1912.1 TRUE FALSE 1763.655566 1770.811269 1408.286145 1722.552154 1429.247276 1807.210698 2058.972316 1661.353447 1888.392243 1522.41297 1.158460681 1.163160918 0.925035567 1.131461823 0.938803928 1.187069956 1.352440077 1.09126333 1.240394216 1 10.57214404 -7.4641 24.26807749 1.191647665 1.064814901 0.179718373 0.115471459 289.3751612 119474.475 0.039497222 0.034833154 3.43E-08 7.4641 -0.126832765 NQGGYGGSSSS(ph)SSYGSGR ddPTM_K562_Paclitaxel_30min_R1 1 NQGGYGGSSSSSSYGSGR 18 0 F8W6I7;P09651-3;P09651-2;P09651;H0YH80;A0A2R8Y4L2 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 NQGGYGGS(0.005)S(0.002)S(0.005)S(0.472)S(0.472)S(0.043)YGS(0.002)GR 97.129 0.0012319 67098000 857.48 898.23 938.9 791.97 612.93 803.62 765.74 958.21 945.93 991.75 TRUE FALSE 869.4873656 996.301789 701.8630828 741.1765889 696.421443 946.1307236 911.0351676 876.8040795 1036.790803 789.6308056 1.101131515 1.261731156 0.888849672 0.938636871 0.8819583 1.198193785 1.153748259 1.110397509 1.313007035 1 9.625034464 -7.290780708 24.62928317 1.161886611 1.017007756 0.234088228 0.126827224 945.0154349 793247.9606 0.047041868 0.041493729 5.12E-08 7.290780708 -0.144878855 NQGGYGGSSSSSSYGS(ph)GR ddPTM_K562_Paclitaxel_30min_R1 4 NQGGYGGSSSSSSYGSGR 18 0 F8W6I7;P09651-3;P09651-2;P09651;H0YH80;A0A2R8Y4L2 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 NQGGYGGSSSSSSYGS(1)GR;NQGGYGGSSSSSSYGS(1)GR;NQGGYGGSSSS(0.001)S(0.001)S(0.047)YGS(0.951)GR;NQGGYGGSSSSSSYGS(1)GR 274.68 8.04E-115 49662000 6733.6 7130.18 10953.3 8689.8 8000.7 6973.23 5609.36 7291.6 4004.57 7432.1 TRUE FALSE 6827.891175 7908.677165 8188.003946 8132.475122 9090.530793 8209.834431 6673.706777 6672.133067 4389.226841 5917.43394 1.153860143 1.336504513 1.383708551 1.374324615 1.536228521 1.387397733 1.127804187 1.127538243 0.741744967 1 12.53075598 -8.207878624 1.684709479 0.897902064 1.367591245 0.704050087 0.120504487 0.214141676 1.121080013 0.090964974 0.037259809 6.20E-09 8.207878624 0.46968918 NQGGYGGSSSSSSYGS(ph)GRRF ddPTM_K562_Paclitaxel_30min_R1 2 NQGGYGGSSSSSSYGSGRRF 20 2 F8W6I7;P09651-3;P09651-2;P09651;H0YH80;A0A2R8Y4L2 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 NQGGYGGSSSSSSYGS(1)GRRF;NQGGYGGSSS(0.001)S(0.002)S(0.007)S(0.015)Y(0.002)GS(0.973)GRRF 141.83 1.40E-12 47048000 3873 3707.9 5134.2 4550.9 3944.2 3677.1 2828.9 3029.6 4545.6 3314.9 TRUE FALSE 3927.233949 4112.741061 3838.007711 4259.025643 4481.466816 4329.182056 3365.669007 2772.21657 4982.22519 2639.32156 1.487971003 1.558256911 1.454164498 1.613681981 1.697961659 1.64026321 1.275202331 1.050351958 1.887691619 1 11.36595142 -13.05243953 0.243469387 5.16E-17 1.570602993 0.315396216 0.221902982 73.61972756 1.714574414 38.17355676 0.360018658 8.86E-14 13.05243953 1.570602993 NQGGYGGSSSSSSYGSGR ddPTM_K562_Paclitaxel_30min_R1 2 NQGGYGGSSSSSSYGSGR 18 0 F8W6I7;P09651-3;P09651-2;P09651;H0YH80;A0A2R8Y4L2 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 0 ; 233.84 3.26E-41 4953100 459.01 215.5 465.58 644.76 552.66 548.49 174.96 217.32 175.48 436.96 FALSE TRUE 465.4375562 239.0290188 348.0385708 603.4079794 627.9416486 645.7570003 208.1577466 198.8573095 192.3356381 347.9073121 1.337820563 0.687047988 1.00037728 1.734392921 1.804910753 1.856117931 0.598313802 0.571581288 0.55283586 1 8.442559191 -7.784036081 24.99016923 0.644980749 1.38585143 0.489633301 0.360494261 233.8498574 258616.9268 0.172654331 0.116496068 1.64E-08 7.784036081 0.740870682 NQHSLYTAT(ph)TPPSSSPSR ddPTM_K562_Paclitaxel_30min_R1 1 NQHSLYTATTPPSSSPSR 18 0 F6SS63;Q8N5C8-2;Q8N5C8 F6SS63 TAB3 TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 1 NQHSLYTAT(0.631)T(0.369)PPSSSPSR 122.64 7.51E-06 6126600 780.49 682.18 962.78 819.56 788.7 646.65 586.49 890.25 673.62 882.67 TRUE FALSE 791.419268 756.6627194 719.7142815 766.9970898 896.1342928 761.3242981 697.7734158 814.6177057 738.3242108 702.7813695 1.126124428 1.076668723 1.024094139 1.091373681 1.275125283 1.083301765 0.992874094 1.159133894 1.050574536 1 9.456932136 -8.999973189 24.60019525 0.999999993 1.101226073 0.172641476 0.072749625 1.098696978 1005279.02 0.073118045 0.018878998 1.00E-09 8.999973189 0.10122608 NQHSLYTATT(ph)PPSSSPSR ddPTM_K562_Paclitaxel_30min_R1 1 NQHSLYTATTPPSSSPSR 18 0 F6SS63;Q8N5C8-2;Q8N5C8 F6SS63 TAB3 TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 1 NQHSLYTAT(0.021)T(0.974)PPSS(0.002)S(0.002)PS(0.002)R 94.271 0.0017254 7000000 1200.5 1065.4 1377.3 1145.9 1136.6 915.82 832.29 967.89 1061.5 1332.2 TRUE FALSE 1217.310704 1181.723975 1029.583581 1072.407103 1291.424163 1078.227818 990.2126827 885.6617031 1163.461818 1060.696909 1.147651788 1.11410146 0.970667089 1.011040095 1.217524207 1.016527728 0.933549136 0.834980941 1.09688433 1 10.05079675 -7.519372218 15.94901978 0.955803102 1.085640809 0.30961217 0.088194862 1.712285682 7794.922983 0.03347667 0.02688098 3.02E-08 7.519372218 0.129837706 NQHSLYTATTPPSS(ph)SPSR ddPTM_K562_Paclitaxel_30min_R1 1 NQHSLYTATTPPSSSPSR 18 0 F6SS63;Q8N5C8-2;Q8N5C8 F6SS63 TAB3 TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 1 NQHSLYTATTPPS(0.018)S(0.327)S(0.327)PS(0.327)R 162.98 1.11E-09 5592300 992.07 800.54 1197.5 1056.3 1026.9 853.14 842.57 1260.1 960.96 1302.5 TRUE FALSE 1005.962041 887.9456645 895.1763145 988.5536458 1166.781166 1004.4324 1002.443259 1153.04664 1053.264502 1037.049785 0.970022901 0.856222794 0.863195121 0.953236441 1.125096579 0.968547909 0.966629832 1.111852735 1.015635427 1 10.01826944 -6.528067219 24.64346651 1.031302333 0.895081388 0.532494432 0.057249123 87.7325717 416696.2052 0.016884659 0.021875299 2.96E-07 6.528067219 -0.136220945 NQKPSQVNGAPGS(ph)PTEPAGQK ddPTM_K562_Paclitaxel_30min_R1 4 NQKPSQVNGAPGSPTEPAGQK 21 1 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 NQKPSQVNGAPGS(0.995)PT(0.005)EPAGQK;NQKPSQVNGAPGS(0.997)PT(0.003)EPAGQK;NQKPSQVNGAPGS(0.965)PT(0.035)EPAGQK;NQKPSQVNGAPGS(0.979)PT(0.021)EPAGQK 143.47 1.08E-16 211377000 20881.6 15179.1 49335.2 24712.1 17664.8 12891.6 13254.6 22782.9 14590.7 32249.2 TRUE FALSE 21174.00683 16836.40547 36879.91859 23127.17651 20071.04483 15177.74425 15769.59116 20847.35044 15992.20193 25676.79534 0.824635884 0.655705093 1.436313142 0.900703386 0.78168029 0.59110742 0.614157295 0.811914032 0.62282702 1 14.64817753 -6.781270514 3.713343074 0.709067236 0.9716792 0.196314061 0.216049391 0.342255341 10.09276533 0.069113503 0.084049041 1.65E-07 6.781270514 0.262611964 NQNYLVPS(ph)PVLR ddPTM_K562_Paclitaxel_30min_R1 2 NQNYLVPSPVLR 12 0 C9J3R1;C9IZP0;J3KR59;J3KR68;Q9UID6 C9J3R1 ZNF639 Zinc finger protein 639 1 NQNYLVPS(1)PVLR;NQNYLVPS(1)PVLR 148.48 0.00041695 87567000 4992.9 4975.3 6383.2 5745.3 4718.2 4377.4 4536.7 4977.5 4044.1 5651.8 TRUE FALSE 5062.816004 5518.520079 4771.682214 5376.822173 5360.89872 5153.670428 5397.515142 4554.630306 4432.553875 4499.960058 1.12508021 1.226348681 1.060383237 1.194859977 1.191321401 1.145270261 1.199458456 1.012149052 0.985020715 1 12.13569648 -8.305599371 6.919931248 0.997432126 1.163288206 0.741062729 0.044484544 0.11876554 15.20318932 0.023354535 0.011223204 4.95E-09 8.305599371 0.16585608 NQPTVYIAAS(ph)PPNTDELMSR ddPTM_K562_Paclitaxel_30min_R1 2 NQPTVYIAASPPNTDELMSR 20 0 A0A1B0GV57;Q9NYJ8-2;Q9NYJ8 A0A1B0GV57 TAB2 TGF-beta-activated kinase 1 and MAP3K7-binding protein 2 1 NQPTVYIAAS(0.972)PPNT(0.028)DELMSR;NQPTVYIAAS(0.999)PPNTDELMSR 178.07 6.39E-15 40995000 1331.02 1302 1533.54 1731 1172.68 872.29 1218.61 1561.14 1190.5 1615.12 TRUE FALSE 1349.658387 1444.156763 1146.37886 1619.981408 1332.41887 1026.978384 1449.834886 1428.511413 1304.852844 1285.957657 1.049535635 1.123020462 0.891459259 1.259747083 1.036129659 0.798609797 1.127435944 1.110854159 1.014693475 1 10.32862742 -2 0.207124518 1.023582268 1.249492343 0.011861244 0.121954081 442.1958402 5.454539702 0.217644128 32.78209242 0.01 2 0.225910075 NQSPT(ph)EAEKPASSSLPSSPPPQLLTR ddPTM_K562_Paclitaxel_30min_R1 2 NQSPTEAEKPASSSLPSSPPPQLLTR 26 1 Q99567;I3L2W3 Q99567 NUP88 Nuclear pore complex protein Nup88 1 NQS(0.034)PT(0.644)EAEKPAS(0.271)S(0.047)S(0.003)LPSSPPPQLLTR;NQS(0.015)PT(0.983)EAEKPAS(0.001)SSLPSSPPPQLLTR 91.481 0.00030139 39770000 1901.46 1361.75 2923.62 2001.74 1937.76 1519.1 1267.02 2016.27 1166.72 2356.27 TRUE FALSE 1928.086307 1510.43047 2185.515972 1873.357356 2201.715719 1788.491056 1507.430431 1844.975278 1278.788669 1876.060881 1.027731203 0.805107385 1.164949387 0.998558935 1.173584366 0.953322504 0.803508269 0.983430387 0.681634952 1 10.87349093 -7.525396552 18.71220904 0.867569007 1.030265814 0.27868641 0.126500996 4.616770283 34282.88559 0.046449991 0.036449992 2.98E-08 7.525396552 0.162696807 NQSPTEAEKPASSSLPS(ph)SPPPQLLTR ddPTM_K562_Paclitaxel_30min_R1 2 NQSPTEAEKPASSSLPSSPPPQLLTR 26 1 Q99567;I3L2W3 Q99567 NUP88 Nuclear pore complex protein Nup88 1 NQS(0.001)PT(0.001)EAEKPAS(0.016)S(0.139)S(0.139)LPS(0.352)S(0.352)PPPQLLTR;NQSPTEAEKPASS(0.002)S(0.024)LPS(0.486)S(0.486)PPPQLLT(0.003)R 82.017 5.89E-05 81014000 4102.4 3207.9 7049.6 4657.5 3240.2 2903.7 2904.3 4320.5 3146.9 5844.9 TRUE FALSE 4159.846257 3558.14937 5269.841292 4358.788796 3681.570097 3418.630425 3455.375764 3953.446557 3449.173806 4653.706172 0.893878149 0.76458402 1.132396653 0.936627418 0.791104973 0.73460384 0.74249977 0.849526466 0.741167078 1 12.18416441 -6.761018142 24.88691354 0.795166811 0.93424569 0.21742663 0.111341756 14.92005638 881440.8321 0.033553588 0.040689367 1.73E-07 6.761018142 0.139078879 NQVIIPLVLS(ph)PDRDEDLMR ddPTM_K562_Paclitaxel_30min_R1 2 NQVIIPLVLSPDRDEDLMR 19 1 Q96G25;Q96G25-2 Q96G25 MED8 Mediator of RNA polymerase II transcription subunit 8 1 NQVIIPLVLS(1)PDRDEDLMR;NQVIIPLVLS(1)PDRDEDLMR 99.923 0.00062107 68189000 1755.94 1762.48 2414.1 2133.02 1917.13 2064.67 1715.45 1926.61 1751.85 2487.89 TRUE FALSE 1780.528578 1954.913527 1804.630598 1996.217644 2178.275563 2430.810235 2040.947682 1762.932455 1920.12302 1980.856652 0.89886796 0.986903078 0.911035433 1.007754722 1.099663401 1.227151007 1.03033588 0.889984872 0.969339714 1 10.95190877 -6.435523945 4.975470479 1.040984886 0.938862865 0.226200438 0.08520612 0.390645017 16.2289742 0.027802777 0.041396376 3.67E-07 6.435523945 -0.102122021 NQVVS(ph)STNGELNTDDPTAGR ddPTM_K562_Paclitaxel_30min_R1 1 NQVVSSTNGELNTDDPTAGR 20 0 H0YBN6;Q9Y6M4-6;Q9Y6M4-5;Q9Y6M4-3;Q9Y6M4-4 H0YBN6 CSNK1G3 1 NQVVS(0.678)S(0.31)T(0.011)NGELNT(0.001)DDPTAGR 169.06 5.41E-13 21521000 1864.4 1486 2222.7 2027.3 1240 1477.9 1440.2 1911.6 1808 2116.2 TRUE FALSE 1890.507352 1648.246505 1661.551895 1897.278052 1408.908993 1739.984814 1713.470432 1749.197648 1981.666478 1684.917278 1.122017903 0.978235861 0.986132623 1.12603632 0.836188822 1.032682635 1.016946323 1.03815046 1.176120931 1 10.71846205 -8.535737225 24.66049308 1.094418919 1.011039082 0.102426631 0.085966941 399.8268776 766783.4003 0.055255986 0.020913366 2.91E-09 8.535737225 -0.083379837 NQWS(ph)MSR ddPTM_K562_Paclitaxel_30min_R1 1 NQWSMSR 7 0 E7ESC6;Q9UIA9 E7ESC6 XPO7 Exportin-7 1 NQWS(0.969)MS(0.031)R 51.688 0.02964 42380000 0 0 110.08 59.702 131.13 61.651 0 149.34 0 0 TRUE FALSE 0 0 82.28894255 55.87298094 148.992126 72.58393923 0 136.6526348 0 0 0 NQYDNDVTVWS(ph)PQGR ddPTM_K562_Paclitaxel_30min_R1 2 NQYDNDVTVWSPQGR 15 0 B4DEV8;P25786;P25786-2 B4DEV8 PSMA1 Proteasome subunit alpha type;Proteasome subunit alpha type-1 1 NQYDNDVTVWS(1)PQGR;NQYDNDVTVWS(1)PQGR 193.77 1.43E-07 27235000 2000.03 2386.8 2457.9 2163.82 1605.86 1834.88 1966.96 2380.8 2279.2 2972.9 TRUE FALSE 2028.036591 2647.398896 1837.372746 2025.04227 1824.605319 2160.270205 2340.180392 2178.53618 2498.127344 2367.021348 0.856788466 1.118451634 0.77623835 0.85552345 0.770844471 0.912653452 0.98866045 0.920370313 1.055388599 1 11.208857 -7.657022075 4.402031193 0.984460568 0.87904818 0.245720424 0.094998805 0.367593756 12.49534911 0.039155917 0.029550284 2.20E-08 7.657022075 -0.105412388 NRDSQNGAIAPGHVSVIRPPQNLYPENIVPSFS(ph)PGPSGR ddPTM_K562_Paclitaxel_30min_R1 1 NRDSQNGAIAPGHVSVIRPPQNLYPENIVPSFSPGPSGR 39 2 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 NRDSQNGAIAPGHVS(0.018)VIRPPQNLY(0.009)PENIVPS(0.26)FS(0.597)PGPS(0.116)GR 46.798 0.002388 5253400 326.43 337.89 294.81 385.99 268.77 233.15 348.04 257.51 263.74 546.56 TRUE FALSE 331.0010271 374.7819729 220.3815693 361.234329 305.3810243 274.4958789 414.0787731 235.6329182 289.0734054 435.170772 0.760623296 0.861229653 0.506425485 0.830097866 0.701749851 0.630777379 0.951531674 0.541472299 0.664275783 1 8.765437852 -11.30516561 4.402190823 1.000246913 0.716701002 0.291215258 0.132701806 0.00030945 4.88E-05 0.123382983 0.029898848 4.95E-12 11.30516561 -0.283545911 NREEEWDPEYT(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 NREEEWDPEYTPK 13 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 NREEEWDPEYT(1)PK 113.11 0.021311 73958000 4774.3 4390.9 7974.4 4601.8 4008.7 4056.8 4073.4 5468.3 3367.9 9439.4 TRUE FALSE 4841.15493 4870.313311 5961.164094 4306.661145 4554.752808 4776.21652 4846.306385 5003.733783 3691.401843 7515.645099 0.644143632 0.648023323 0.793167322 0.573026146 0.606036175 0.635503201 0.644829063 0.665775688 0.491162341 1 12.87568123 -12.16740272 2.567822035 1.97574831 0.637392988 0.699790893 0.071971111 7357687.769 2030919.344 41784910.96 0.018261911 6.80E-13 12.16740272 -1.338355322 NREILDESLR ddPTM_K562_Paclitaxel_30min_R1 2 NREILDESLR 10 1 Q8WUM4;Q8WUM4-2 Q8WUM4 PDCD6IP Programmed cell death 6-interacting protein 0 ; 166.69 0.001207 20059100 3395.7 3035.5 3809.7 3833.5 3378.6 3706.5 3060.1 3095.4 3229.6 4255 FALSE TRUE 3443.250277 3366.926155 2847.894117 3587.636468 3838.82252 4363.795733 3640.738 2832.426449 3539.81751 3387.828664 1.016359036 0.993830116 0.840625191 1.058978131 1.133121802 1.288080409 1.07465234 0.836059532 1.044863203 1 11.7261452 -6.480750909 24.07722623 1.069146569 0.95382295 0.166929362 0.114052942 624.0275605 356648.1935 0.035758883 0.053031883 3.31E-07 6.480750909 -0.115323619 NRHS(ph)PDHPGMGSSQASSSSSLR ddPTM_K562_Paclitaxel_30min_R1 8 NRHSPDHPGMGSSQASSSSSLR 22 1 J3KR33;A0JLT2 J3KR33 MED19 Mediator of RNA polymerase II transcription subunit 19 1 NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR;NRHS(1)PDHPGMGSSQASSSSSLR 125.75 7.38E-08 238576500 10041.89 9405.52 12953.28 12036.74 9466.28 9766.48 8749.7 10197.32 8873.93 12054.45 TRUE FALSE 10182.50744 10432.44648 9683.06426 11264.75737 10755.7476 11498.4281 10409.9099 9330.994016 9726.310626 9597.746473 1.060926903 1.086968333 1.008889356 1.17368774 1.12065344 1.198034156 1.084620221 0.972206761 1.013395244 1 13.22847999 -8.163927524 5.095055114 0.995141482 1.108634382 0.494239852 0.051114253 0.198620479 8.057097251 0.02649216 0.014924914 6.86E-09 8.163927524 0.1134929 NRLENDGATALAEAFR ddPTM_K562_Paclitaxel_30min_R1 1 NRLENDGATALAEAFR 16 1 P46060 P46060 RANGAP1 Ran GTPase-activating protein 1 0 110.6 0.0085588 7101400 637.25 788.02 787.74 946.67 676.97 629.3 601.26 959.65 714.32 779.04 FALSE TRUE 646.1734661 874.0586885 588.8652944 885.9548233 769.1847752 740.8975192 715.3459462 878.1217426 782.9336277 620.2712204 1.041759548 1.40915564 0.94936743 1.428334564 1.24007813 1.194473474 1.15327928 1.415706087 1.262244002 1 9.276755377 -11.27074747 3.559616248 0.999403377 1.237458502 0.1751753 0.151173862 78031061.67 147287572.3 533354.8174 0.036474526 5.36E-12 11.27074747 0.238055125 NRLS(ph)SSGSNCSSGSEGEPVALHAGICVR ddPTM_K562_Paclitaxel_30min_R1 1 NRLSSSGSNCSSGSEGEPVALHAGICVR 28 1 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 NRLS(0.256)S(0.256)S(0.256)GS(0.103)NCS(0.013)S(0.11)GS(0.007)EGEPVALHAGICVR 68.959 0.00044021 13859000 580.28 582.38 827.78 640.11 615.64 444.32 672.85 756.19 808.28 693.74 TRUE FALSE 588.4057103 645.9662179 618.7967011 599.0562096 699.5005909 523.1139134 800.519775 691.9469395 885.9189055 552.3554072 1.065266498 1.169475684 1.120287216 1.084548466 1.266395842 0.947060365 1.449283857 1.252720496 1.603892881 1 9.109453042 -7.772288695 24.99254583 1.347534348 1.118173143 0.296981686 0.162375581 248.5216506 572490.1346 0.062198813 0.042397966 1.69E-08 7.772288695 -0.229361205 NRLSS(ph)SGSNCSSGSEGEPVALHAGICVR ddPTM_K562_Paclitaxel_30min_R1 1 NRLSSSGSNCSSGSEGEPVALHAGICVR 28 1 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 NRLS(0.225)S(0.284)S(0.284)GS(0.071)NCS(0.071)S(0.052)GS(0.014)EGEPVALHAGICVR 86.791 2.23E-06 13974000 402.68 450.18 475.41 409.74 422.83 341.75 370.48 303.03 458.05 491.36 TRUE FALSE 408.3187624 499.3321748 355.3868657 383.4611103 480.4266046 402.3545641 440.776646 277.28571 502.0477491 391.2205623 1.043704758 1.276344402 0.908405386 0.980166043 1.22801982 1.028459654 1.126670447 0.708770798 1.28328569 1 8.611838389 -2.000005575 0.215765186 1.005319381 1.611358226 0.012671455 0.168300992 219.9547077 2.779433594 0.264677179 46.15029111 0.009999872 2.000005575 0.606038844 NRLSSSGSNCSS(ph)GSEGEPVALHAGICVR ddPTM_K562_Paclitaxel_30min_R1 1 NRLSSSGSNCSSGSEGEPVALHAGICVR 28 1 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 NRLS(0.16)S(0.124)S(0.124)GS(0.04)NCS(0.166)S(0.346)GS(0.04)EGEPVALHAGICVR 70.833 0.00029664 8923800 274.34 147.48 267.8 215.91 296.71 140.93 305.99 278.33 303.95 142.39 TRUE FALSE 278.1816064 163.5823651 200.1905779 202.062499 337.1269253 165.9219567 364.0500051 254.6841292 333.1457556 113.3708398 2.453731549 1.442896298 1.765803078 1.782314564 2.973665237 1.463532924 3.211143233 2.246469459 2.93854889 1 6.824905802 -6.657348087 23.97748573 2.371844902 1.824455991 0.086703206 0.682443413 15.94375264 3632.984407 0.187549471 0.242125248 2.20E-07 6.657348087 -0.547388911 NRNS(ph)NVIPYDYNR ddPTM_K562_Paclitaxel_30min_R1 3 NRNSNVIPYDYNR 13 1 P08575-4;P08575-9;P08575-10;P08575-8;P08575-7;P08575-5;P08575-6;P08575 P08575-4 PTPRC Receptor-type tyrosine-protein phosphatase C 1 NRNS(0.541)NVIPY(0.002)DY(0.457)NR;NRNS(1)NVIPYDYNR;NRNS(1)NVIPYDYNR 154.13 0.00070506 26482100 2607.36 2230.43 3911.39 3101.82 2503.77 2259.34 2351.72 2864.07 2427.75 3321.65 TRUE FALSE 2643.871084 2473.95589 2923.911219 2902.883148 2844.825863 2660.002226 2797.946593 2620.749377 2660.946235 2644.695907 0.999688122 0.935440587 1.105575583 1.097624548 1.0756722 1.005787554 1.05794643 0.99094545 1.006144498 1 11.36888613 -10.42364551 11.65659123 1.000000122 1.032160802 0.030737896 0.050708726 0 0 0.052831268 0.012813465 3.77E-11 10.42364551 0.03216068 NRPDYVS(ph)EEEEDDEDFETAVK ddPTM_K562_Paclitaxel_30min_R1 2 NRPDYVSEEEEDDEDFETAVK 21 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 NRPDYVS(1)EEEEDDEDFETAVK;NRPDY(0.001)VS(0.999)EEEEDDEDFETAVK 119.18 8.46E-06 111696000 6926.6 5926 12888 7985.1 5970.5 5604.9 5075 7825 6959.8 9326.5 TRUE FALSE 7023.59377 6573.02072 9634.265003 7472.971426 6783.783181 6598.850318 6037.954757 7160.217408 7628.319887 7425.754181 0.945842483 0.885165407 1.297412326 1.006358579 0.913548041 0.888643787 0.81310997 0.964241104 1.027278806 1 12.85832184 -6.64822782 5.244761302 0.924800248 1.045783431 0.152894765 0.114498917 0.374051012 15.70012692 0.035806294 0.046404578 2.25E-07 6.64822782 0.120983183 NRS(ph)AEEGELAESK ddPTM_K562_Paclitaxel_30min_R1 1 NRSAEEGELAESK 13 1 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 NRS(1)AEEGELAESK 79.013 0.024369 15585000 1858 1646.6 3141.5 1783 1441.7 1746.5 1444.9 1941.3 1664.5 2622.9 TRUE FALSE 1884.017732 1826.381356 2348.389471 1668.64636 1638.083948 2056.217253 1719.062232 1776.374448 1824.382662 2088.35154 0.902155454 0.874556473 1.124518275 0.799025609 0.784390902 0.984612606 0.823167077 0.850610835 0.873599405 1 11.02814887 NS(ph)FRYNGLIHR ddPTM_K562_Paclitaxel_30min_R1 2 NSFRYNGLIHR 11 1 H0YKD8;P46779;P46779-2;P46779-3;H0YLP6;H0YMF4;P46779-4;P46779-5 H0YKD8 RPL28 60S ribosomal protein L28 1 NS(1)FRYNGLIHR;NS(0.999)FRY(0.001)NGLIHR 81.278 0.023776 90928000 2518.5 3141.7 4496.9 3354.6 2742.5 2334.2 2051.88 2540.1 2424.2 2453.2 TRUE FALSE 2553.76677 3484.721431 3361.601978 3139.450971 3116.074931 2748.137596 2441.213518 2324.30265 2657.055242 1953.236493 1.307453951 1.784075529 1.721041968 1.607307144 1.595339295 1.406966133 1.249829975 1.189975028 1.36033463 1 10.93165092 -7.51510465 1.702665637 1.201567252 1.628069319 0.640949783 0.142256197 0.232302153 1.357773732 0.066213196 0.049856427 3.05E-08 7.51510465 0.426502067 NS(ph)PGSQVASNPR ddPTM_K562_Paclitaxel_30min_R1 1 NSPGSQVASNPR 12 0 Q9H0D6-2;Q9H0D6 Q9H0D6-2 XRN2 5-3 exoribonuclease 2 1 NS(0.998)PGS(0.002)QVASNPR 141.59 2.99E-23 0 834.08 925.34 1482 1246.3 768.29 708.32 807.93 884.56 702.13 1106.8 TRUE FALSE 845.7596934 1026.37175 1107.850771 1166.367896 872.9441053 833.9306067 961.2304998 809.4111067 769.5727237 881.2335525 0.959745224 1.164698901 1.25715909 1.323562741 0.99059336 0.946321897 1.090778372 0.918497831 0.873290312 1 9.783380616 -6.880931034 8.243444336 0.9686446 1.180783657 0.497882843 0.1016919 0.218505129 14.83268714 0.033331373 0.037856294 1.32E-07 6.880931034 0.212139057 NS(ph)PVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLR ddPTM_K562_Paclitaxel_30min_R1 1 NSPVTKTPPRDLPTIPGVTSPSSDEPPMEASQSHLR 36 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 NS(0.253)PVT(0.212)KT(0.212)PPRDLPT(0.088)IPGVT(0.105)S(0.105)PS(0.017)S(0.008)DEPPMEASQSHLR 41.468 0.012791 23667000 1118.3 1055.7 2270 1318 984.51 1094.7 674.08 1123.5 805.36 1525.6 TRUE FALSE 1133.95965 1170.964896 1696.910425 1233.469379 1118.61693 1288.829675 801.9831611 1028.051662 882.7184264 1214.681883 0.933544549 0.964009518 1.396999864 1.01546701 0.920913488 1.061042972 0.660241313 0.846354652 0.726707494 1 10.24636282 -7.419436371 1.613852034 0.802134352 1.076811294 0.319098917 0.15759108 0.431450793 2.247219445 0.074407232 0.059951889 3.81E-08 7.419436371 0.274676942 NS(ph)QEGEY(ph)IKMFMRGR ddPTM_K562_Paclitaxel_30min_R1 1 NSQEGEYIKMFMRGR 15 2 B5MBZ0 B5MBZ0 EML4 2 NS(1)QEGEY(1)IKMFMRGR 71.98 0.0226 13995000 0 0 0 62.008 0 0 0 0 0 0 TRUE FALSE 0 0 0 58.03108442 0 0 0 0 0 0 0 NS(ph)RDGDPLPSSLSCK ddPTM_K562_Paclitaxel_30min_R1 2 NSRDGDPLPSSLSCK 15 1 H3BP35;P53602 H3BP35 MVD Diphosphomevalonate decarboxylase 1 NS(1)RDGDPLPSSLSCK;NS(1)RDGDPLPSSLSCK 91.889 0.0079193 50931000 5286.8 4795.7 10591.6 5920.3 4567.8 4349.3 4225.1 6022 3578.5 7995.4 TRUE FALSE 5360.831511 5319.310744 7917.619585 5540.598456 5190.011693 5120.587288 5026.790668 5510.393512 3922.230914 6365.933091 0.84211245 0.835590112 1.243748477 0.870351349 0.81527902 0.804373407 0.789639256 0.865606571 0.616128203 1 12.63615628 -6.512896672 24.37448669 0.809924009 0.976170243 0.211869495 0.136597796 506.1417279 1235911.025 0.039041305 0.053681273 3.07E-07 6.512896672 0.166246233 NS(ph)S(ph)ST(ph)S(ph)KQK ddPTM_K562_Paclitaxel_30min_R1 1 NSSSTSKQK 9 1 Q9UHB7;Q9UHB7-2 Q9UHB7 AFF4 AF4/FMR2 family member 4 4 NS(0.98)S(0.955)S(0.104)T(0.98)S(0.98)KQK 73.665 0.017944 0 939 1117.6 1363.3 1162.1 1073.8 1011.4 1246.8 1015.5 960.65 1320.6 TRUE FALSE 952.1488971 1239.623347 1019.118054 1087.568107 1220.06974 1190.757589 1483.373791 929.2269364 1052.924725 1051.460995 0.905548472 1.178953241 0.969239999 1.034339945 1.160356633 1.132479088 1.410773959 0.883748366 1.001392091 1 10.03817962 -5.241874549 22.98799547 1.090774617 0.905547957 0.130069711 0.139212302 3070.367649 3607404.21 0.035388937 1.116692785 5.73E-06 5.241874549 -0.185226659 NSAS(ph)VGIIQR ddPTM_K562_Paclitaxel_30min_R1 1 NSASVGIIQR 10 0 Q53EU6 Q53EU6 AGPAT9 Glycerol-3-phosphate acyltransferase 3 1 NS(0.03)AS(0.97)VGIIQR 88.224 0.020341 46684000 2283.6 1918.7 2536 1952.9 1360.7 1856 1935.2 2103.7 1852.1 3368.7 TRUE FALSE 2315.577446 2128.190155 1895.755435 1827.649735 1546.050377 2185.13554 2302.394098 1924.977554 2030.00248 2682.157091 0.863326557 0.793462158 0.706802537 0.6814104 0.576420517 0.814693348 0.858411353 0.717697543 0.756854432 1 11.38917802 -9.072975887 19.84287421 1 0.748200805 0.446463693 0.082754966 3611.135672 981904.8358 0.086337714 0.022292302 8.45E-10 9.072975887 -0.251799196 NSASATTPLS(ph)GNSS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 NSASATTPLSGNSSR 15 0 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1;Q9Y608-2 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 2 NS(0.001)ASATT(0.002)PLS(0.714)GNS(0.298)S(0.985)R;NS(0.005)AS(0.003)ATT(0.02)PLS(0.966)GNS(0.434)S(0.572)R 116.87 0.0069615 19305100 6507.5 7133.8 9156.9 6917.7 6419.4 6581.1 6847.2 8726.9 5686.4 10585.7 TRUE FALSE 6598.625077 7912.692409 6845.127344 6474.029684 7293.830961 7748.165682 8146.420455 7985.495373 6232.604128 8428.328529 0.782910283 0.93882107 0.812157158 0.768127353 0.865394714 0.919300387 0.966552315 0.947458959 0.739482817 1 13.04103083 -7.079907369 4.449974853 0.913762604 0.830975537 0.224965023 0.077547664 0.381036634 13.7459634 0.025991239 0.026480688 8.32E-08 7.079907369 -0.082787068 NSASATTPLS(ph)GNSSR ddPTM_K562_Paclitaxel_30min_R1 2 NSASATTPLSGNSSR 15 0 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1;Q9Y608-2 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 NSASAT(0.001)T(0.026)PLS(0.969)GNS(0.005)SR;NSASAT(0.011)T(0.306)PLS(0.682)GNS(0.002)SR 182.91 1.04E-06 86506000 3105.5 2870.8 4723.1 3721 3130.3 2753.8 2582.3 3296.8 2717.2 3881.4 TRUE FALSE 3148.986581 3184.243652 3530.69499 3482.351715 3556.699856 3242.147765 3072.277944 3016.716262 2978.199201 3090.368549 1.018967974 1.030376669 1.142483472 1.126840265 1.150898283 1.049113629 0.994146133 0.976167151 0.963703569 1 11.59356319 -7.653235962 3.125805226 0.979876432 1.095304397 0.607659415 0.041681301 0.188595195 3.675355277 0.019577939 0.014383474 2.22E-08 7.653235962 0.115427965 NSASATTPLSGNS(ph)SR ddPTM_K562_Paclitaxel_30min_R1 1 NSASATTPLSGNSSR 15 0 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1;Q9Y608-2 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 NSASAT(0.005)T(0.076)PLS(0.217)GNS(0.621)S(0.08)R 83.891 0.021352 30253000 2020.1 2058.7 2782.5 2490.3 2154.6 2154 2024.8 3073.1 2005.9 3598.8 TRUE FALSE 2048.387633 2283.475828 2080.023461 2330.583304 2448.092998 2535.981656 2408.99523 2812.020973 2198.575658 2865.362585 0.714879033 0.796923866 0.725919809 0.813364185 0.854374595 0.885047383 0.840729631 0.981383993 0.767294048 1 11.48450199 -2.000000001 0.109248915 1.053324186 0.04441022 0.578065577 0.059642022 75.27174981 0.575975281 0.535643346 11.44330893 0.01 2.000000001 -1.008913966 NSASATTPLSGNSS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 NSASATTPLSGNSSR 15 0 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1;Q9Y608-2 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 NSASATTPLS(0.002)GNS(0.016)S(0.982)R 129.89 5.01E-05 32015000 2190.3 1734 2486.5 1941.6 1560.1 2040.5 1839.7 2142.3 1546.7 2828.3 TRUE FALSE 2220.970958 1923.323984 1858.752322 1817.074466 1772.612033 2402.354025 2188.773471 1960.298243 1695.267446 2251.890908 0.986269339 0.854092877 0.825418459 0.806910521 0.787166033 1.066816344 0.971971361 0.870512082 0.752819526 1 11.13692122 NSATCHSEDS(ph)DLEID ddPTM_K562_Paclitaxel_30min_R1 2 NSATCHSEDSDLEID 15 0 Q13371-2;Q13371 Q13371-2 PDCL Phosducin-like protein 1 NSATCHS(0.017)EDS(0.983)DLEID;NSATCHS(0.004)EDS(0.996)DLEID 110.35 0.0020836 141795000 7249 6719.7 8633.9 7688.6 6001.4 5965.7 6193.2 7716.2 6666.1 7938.9 TRUE FALSE 7350.508365 7453.379571 6454.165162 7195.487609 6818.892285 7023.633132 7368.327369 7060.660647 7306.40869 6320.947822 1.162880722 1.17915537 1.021075532 1.138355799 1.078776866 1.111167712 1.165699762 1.117025618 1.155903971 1 12.62592519 NSCNVLHPQS(ph)PNNSNR ddPTM_K562_Paclitaxel_30min_R1 2 NSCNVLHPQSPNNSNR 16 0 Q7Z333-3;Q7Z333;Q7Z333-4 Q7Z333-3 SETX Probable helicase senataxin 1 NS(0.021)CNVLHPQS(0.965)PNNS(0.015)NR;NSCNVLHPQS(0.899)PNNS(0.101)NR 120.15 0.00020521 50529000 3802.4 3767.3 4690.1 4094 3834.6 3728.8 2954.4 4227.4 3266.1 5001.8 TRUE FALSE 3855.645331 4178.626554 3506.026249 3831.429164 4356.93744 4390.050325 3514.981977 3868.255983 3579.823498 3982.430414 0.968163892 1.049265428 0.880373512 0.962083142 1.094039817 1.102354559 0.882622321 0.971330464 0.898904218 1 11.95943344 -7.785068228 24.99994813 0.935825157 1.007027474 0.202710127 0.068983196 426.4788144 451221.352 0.030591625 0.020639098 1.64E-08 7.785068228 0.071202318 NSFNNPAY(ph)YVLEGVPHQLLPPEPPSPAR ddPTM_K562_Paclitaxel_30min_R1 2 NSFNNPAYYVLEGVPHQLLPPEPPSPAR 28 0 O15357;A0A0A0MTP6;O15357-2 O15357 INPPL1 "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2" 1 NS(0.013)FNNPAY(0.925)Y(0.062)VLEGVPHQLLPPEPPS(0.001)PAR;NS(0.001)FNNPAY(0.731)Y(0.268)VLEGVPHQLLPPEPPSPAR 87.671 9.12E-06 245070000 1434.93 1240.881 1612.9 1536.91 1068.79 967.59 942.81 1297.403 1048.6 1834.46 TRUE FALSE 1455.023447 1376.364584 1205.703447 1438.339472 1214.377293 1139.178501 1121.703276 1187.180517 1149.322715 1460.596045 0.99618471 0.942330762 0.825487273 0.984761993 0.831425839 0.779940836 0.767976388 0.812805513 0.786886093 1 10.51234151 -6.877878734 6.612410922 0.813225999 0.929149504 0.312191646 0.075700041 0.239499551 12.94280506 0.022628012 0.0257619 1.32E-07 6.877878734 0.115923505 NSGSDGSPS(ph)PLLAR ddPTM_K562_Paclitaxel_30min_R1 2 NSGSDGSPSPLLAR 14 0 Q9HCH0;H7C1V4;Q9HCH0-2 Q9HCH0 NCKAP5L Nck-associated protein 5-like 1 NSGSDGS(0.003)PS(0.997)PLLAR;NSGSDGS(0.004)PS(0.996)PLLAR 163.91 0.00010238 50715000 2920.4 2614 3638.8 2737.8 2444.1 2438.3 2522.1 3176.9 2213.49 3505.9 TRUE FALSE 2961.29461 2899.40536 2720.139936 2562.209762 2777.027799 2870.69827 3000.655309 2907.002515 2426.105605 2791.395656 1.060865236 1.0386938 0.974473085 0.91789559 0.994852805 1.028409664 1.074965959 1.041415433 0.869137129 1 11.44677091 -5.620681077 4.837320007 0.991622208 1.055801426 0.164597974 0.056260093 0.389441739 14.81053191 0.01530983 0.043749973 2.40E-06 5.620681077 0.064179218 NSKYEYDPDIS(ph)PPR ddPTM_K562_Paclitaxel_30min_R1 1 NSKYEYDPDISPPR 14 1 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 NSKYEYDPDIS(1)PPR 80.459 0.021499 40221000 3355 2908.8 5773.2 3783.5 2708.2 2443.3 2456.3 3323.8 2801.3 4584.3 TRUE FALSE 3401.980351 3226.392621 4315.684258 3540.843244 3077.10269 2876.584949 2922.370102 3041.422443 3070.377382 3650.017144 0.932045034 0.883939032 1.182373695 0.970089483 0.843037873 0.788101764 0.800645583 0.833262509 0.841195332 1 11.83368752 -6.726545788 4.809943618 0.836371947 1.000676847 0.363866723 0.090560767 0.195477038 10.54417444 0.027678521 0.034926688 1.88E-07 6.726545788 0.164304901 NSLDAS(ph)RPAGLSPTLTPGER ddPTM_K562_Paclitaxel_30min_R1 1 NSLDASRPAGLSPTLTPGER 20 1 F8W708;E7ERW0;E7EQU6;E7EWF5;G5E9M9;A0A075B6E4;A0A0A6YYI5;G5E9M7;Q14135-5;Q14135-6;Q14135-2;Q14135;Q14135-4 F8W708 VGLL4 Transcription cofactor vestigial-like protein 4 1 NS(0.154)LDAS(0.688)RPAGLS(0.121)PT(0.036)LT(0.002)PGER 56.9 0.027663 23266000 873.66 535.93 846.75 870.43 713.83 810.37 766.65 822.82 649.11 818.11 TRUE FALSE 885.8939355 594.4446498 632.97749 814.6045157 811.0657312 954.0777413 912.1178353 752.9163051 711.4599158 651.3787329 1.360028952 0.912594501 0.971750317 1.250585066 1.245152306 1.464705083 1.400288019 1.155881006 1.092236943 1 9.347352807 -4.937891498 21.20676742 1.183546008 5.024129378 0.095298875 0.171866538 1649.253064 590474.9609 0.045761126 14326.555 1.15E-05 4.937891498 3.84058337 NSLDASRPAGLSPT(ph)LTPGER ddPTM_K562_Paclitaxel_30min_R1 1 NSLDASRPAGLSPTLTPGER 20 1 F8W708;E7ERW0;E7EQU6;E7EWF5;G5E9M9;A0A075B6E4;A0A0A6YYI5;G5E9M7;Q14135-5;Q14135-6;Q14135-2;Q14135;Q14135-4 F8W708 VGLL4 Transcription cofactor vestigial-like protein 4 1 NSLDAS(0.003)RPAGLS(0.247)PT(0.749)LTPGER 122.83 7.23E-06 8352200 866.27 693.99 1045 723.81 846.54 690.24 646.19 693.08 717.35 1026.4 TRUE FALSE 878.4004527 769.7621751 781.1768256 677.3880663 961.85308 812.6443725 768.8011792 634.1985279 786.2546727 817.2191166 1.074865278 0.941928743 0.955896417 0.828894054 1.176983089 0.994402059 0.940752809 0.776044656 0.962109986 1 9.674579142 -7.993055494 8.004445427 0.893214147 0.990107987 0.113900595 0.100742704 0.239424509 120.4644741 0.043585233 0.028268851 1.02E-08 7.993055494 0.09689384 NSLLAGGDDDTMSVIS(ph)GIS(ph)SR ddPTM_K562_Paclitaxel_30min_R1 2 NSLLAGGDDDTMSVISGISSR 21 0 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 2 NSLLAGGDDDT(0.016)MS(0.029)VIS(0.916)GIS(0.718)S(0.321)R;NSLLAGGDDDT(0.005)MS(0.052)VIS(0.939)GIS(0.561)S(0.443)R 99.414 0.00043827 0 2256.53 1805.85 2248.91 2057.15 1795.09 1292.99 1868.07 2570.87 2073.16 3391.9 TRUE FALSE 2288.128382 2003.01881 1681.144856 1925.213606 2039.611649 1522.283622 2222.526531 2352.458547 2272.296281 2700.628918 0.847257602 0.741686056 0.622501242 0.712876024 0.755235803 0.56367745 0.822966279 0.871078041 0.841395227 1 11.3990797 -8.586253092 1.089222315 0.974504136 0.709537682 0.542938153 0.081402353 0.374229727 0.837822107 0.077103492 0.026900939 2.59E-09 8.586253092 -0.264966454 NSLLAGGDDDTMSVIS(ph)GISSR ddPTM_K562_Paclitaxel_30min_R1 2 NSLLAGGDDDTMSVISGISSR 21 0 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 1 NSLLAGGDDDTMSVIS(0.997)GIS(0.002)SR;NSLLAGGDDDTMSVIS(0.978)GIS(0.02)S(0.003)R 246.2 5.01E-78 124277000 3495 2847 3904.2 2695 2648.6 2991.9 2873.5 3730.8 3436.4 5040.9 TRUE FALSE 3543.940783 3157.845088 2918.536423 2522.154762 3009.384161 3522.471457 3418.731624 3413.845253 3766.481574 4013.561813 0.882991455 0.786793685 0.727168674 0.628408102 0.749803865 0.877642259 0.851794935 0.85057747 0.938438661 1 11.9706674 -8.362171636 0.748741777 0.989986958 0.75493976 0.574310997 0.067218971 0.518565828 0.563781174 0.069759418 0.031505522 4.34E-09 8.362171636 -0.235047197 NSLLAGGDDDTMSVISGISS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 NSLLAGGDDDTMSVISGISSR 21 0 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 1 NSLLAGGDDDT(0.001)MS(0.004)VIS(0.05)GIS(0.251)S(0.695)R 84.371 0.0048793 0 420.89 397.52 603.72 413.62 431.39 305.34 292.17 331.4 238.7 450.24 TRUE FALSE 426.7837586 440.9225779 451.3034193 387.0922645 490.1526215 359.4877618 347.6077323 303.2455015 261.6282015 358.4808409 1.19053436 1.229975295 1.258933164 1.079812978 1.367304931 1.002808856 0.969668927 0.845918294 0.729824782 1 8.485752205 -7.631431174 2.043289147 0.855573555 1.219038841 0.725700385 0.097933356 0.160385384 1.36486715 0.043920662 0.031103167 2.34E-08 7.631431174 0.363465286 NSLPAS(ph)PAHQLSSS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 NSLPASPAHQLSSSPR 16 0 Q8TEK3-1;Q8TEK3 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 2 NS(0.004)LPAS(0.996)PAHQLS(0.155)S(0.375)S(0.47)PR;NSLPAS(0.998)PAHQLS(0.01)S(0.421)S(0.57)PR 159.47 1.49E-06 39849000 6771.2 6337.8 8548.7 7610.4 6719.9 6149.4 5967.8 7342.4 5996.1 7880.9 TRUE FALSE 6866.017691 7029.782437 6390.474956 7122.303007 7635.264149 7239.909748 7100.158896 6718.61729 6572.052196 6274.768254 1.094226498 1.120325429 1.018439996 1.135070288 1.216820102 1.15381309 1.131541215 1.070735526 1.047377677 1 12.61534646 -8.703029047 1.742282076 1.006290342 1.12492831 0.432503759 0.047332456 0.37035518 2.124780541 0.04900387 0.014797153 1.98E-09 8.703029047 0.118637968 NSLPAS(ph)PAHQLSSSPR ddPTM_K562_Paclitaxel_30min_R1 1 NSLPASPAHQLSSSPR 16 0 Q8TEK3-1;Q8TEK3 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 1 NS(0.006)LPAS(0.98)PAHQLS(0.006)S(0.006)S(0.002)PR 178.23 1.26E-09 8451800 2392 1849.9 3181.6 2367.7 2043.3 1908.3 1729 2123.3 1607.5 2554.6 TRUE FALSE 2425.49538 2051.878338 2378.36573 2215.846319 2321.632053 2246.710211 2057.068724 1942.912412 1761.907558 2033.971118 1.192492538 1.008804068 1.16932129 1.089418773 1.14142823 1.104592977 1.011355917 0.955231072 0.866240205 1 10.99008348 -7.973161238 2.131758606 0.930956469 1.116465747 0.676753758 0.05562566 0.179144649 1.622526291 0.029411622 0.015990438 1.06E-08 7.973161238 0.185509278 NSMSPGVTHRPPS(ph)AGNTGGLMGGDLTSGAGTSAGNGYGNPR ddPTM_K562_Paclitaxel_30min_R1 1 NSMSPGVTHRPPSAGNTGGLMGGDLTSGAGTSAGNGYGNPR 41 1 Q06413-5;Q06413-6;A0A0D9SGI5;A0A0D9SFD0;Q06413-4;Q06413;Q06413-2;Q06413-3;A0A0R4J2G5;D6RJG6;D8L7E9;A0A0D9SGF3;D6RC63;D6R942 Q06413-5 MEF2C Myocyte-specific enhancer factor 2C 1 NS(0.002)MS(0.008)PGVT(0.026)HRPPS(0.48)AGNT(0.48)GGLMGGDLT(0.002)S(0.001)GAGTSAGNGYGNPR 70.488 3.85E-08 23572000 3716 2971.5 5329.7 3543 2800.6 2719.4 2607.8 3630.9 3408.4 4273 TRUE FALSE 3768.035465 3295.938419 3984.151318 3315.767838 3182.089135 3201.647408 3102.616436 3322.432382 3735.792049 3402.160254 1.107542027 0.968778121 1.171065153 0.9746066 0.935314299 0.94106308 0.911954818 0.976565515 1.098064691 1 11.73223538 -6.470939266 24.55250417 0.969472324 1.071383933 0.337731241 0.066762321 326.8262817 154494.8095 0.018717679 0.02776242 3.38E-07 6.470939266 0.101911608 NSMSPGVTHRPPSAGNT(ph)GGLMGGDLTSGAGTSAGNGYGNPR ddPTM_K562_Paclitaxel_30min_R1 1 NSMSPGVTHRPPSAGNTGGLMGGDLTSGAGTSAGNGYGNPR 41 1 Q06413-5;Q06413-6;A0A0D9SGI5;A0A0D9SFD0;Q06413-4;Q06413;Q06413-2;Q06413-3;A0A0R4J2G5;D6RJG6;D8L7E9;A0A0D9SGF3;D6RC63;D6R942 Q06413-5 MEF2C Myocyte-specific enhancer factor 2C 1 NS(0.007)MS(0.031)PGVT(0.213)HRPPS(0.208)AGNT(0.492)GGLMGGDLT(0.033)S(0.015)GAGTSAGNGYGNPR 53.748 0.00027503 19928000 2299.1 1837.1 3797.3 2801.7 2110.7 1992.6 2107.3 2493.3 2302.4 3007 TRUE FALSE 2331.294493 2037.680791 2838.624651 2622.011502 2398.213074 2345.959633 2507.149174 2281.478602 2523.555807 2394.171749 0.973737366 0.851100507 1.185639523 1.095164331 1.001687985 0.979862716 1.047188521 0.952930216 1.05404126 1 11.22531093 -5.730923516 24.99998327 1.036656483 0.912418955 0.357546774 0.068084054 232.0923581 190137.4715 0.017834502 0.047173938 1.86E-06 5.730923516 -0.124237528 NSNS(ph)PPS(ph)PSSMNQR ddPTM_K562_Paclitaxel_30min_R1 1 NSNSPPSPSSMNQR 14 0 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 2 NS(0.02)NS(0.978)PPS(0.875)PS(0.069)S(0.057)MNQR 55.815 0.029726 0 393.81 184.42 562.45 309.66 183.11 341.84 227.88 358.67 137.08 307.85 TRUE FALSE 399.324555 204.5555993 420.4525412 289.7997936 208.0526821 402.4605243 271.1190404 328.1987448 150.2471465 245.110001 1.629164674 0.834546116 1.715362651 1.182325455 0.848813517 1.641958805 1.106111702 1.338985531 0.612978442 1 7.93728554 -8.751632872 24.99726449 0.806489193 1.274030829 0.28023241 0.307561423 221.2322296 563941.5889 0.199531526 0.073359851 1.77E-09 8.751632872 0.467541636 NSNSPPS(ph)PSSMNQR ddPTM_K562_Paclitaxel_30min_R1 5 NSNSPPSPSSMNQR 14 0 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 NSNS(0.151)PPS(0.749)PS(0.05)S(0.05)MNQR;NSNS(0.047)PPS(0.851)PS(0.051)S(0.051)MNQR;NSNS(0.07)PPS(0.924)PS(0.004)S(0.001)MNQR;NSNS(0.009)PPS(0.929)PS(0.057)S(0.005)MNQR;NSNS(0.007)PPS(0.845)PS(0.097)S(0.051)MNQR 150.01 4.97E-22 128022100 8593.6 7073.66 11606.7 9079.94 7794.41 8135.3 6725.99 9742.7 8221.8 10562.1 TRUE FALSE 8713.936914 7845.98612 8676.445035 8497.593289 8856.140602 9577.98123 8002.21149 8914.996823 9011.540626 8409.538222 1.036196838 0.932986558 1.031738581 1.010470856 1.053106647 1.138942588 0.951563722 1.060105393 1.071585667 1 13.03781087 -6.271598996 1.921620541 1.047175191 0.987695314 0.13451733 0.052549998 0.61660637 4.431670441 0.01603569 0.03201961 5.35E-07 6.271598996 -0.059479877 NSPNNISGISNPPGT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 NSPNNISGISNPPGTPR 17 0 Q9NW25;A0A087WVT6;Q9BWW4-2;Q9BWW4-3;Q9BWW4 Q9NW25 SSBP3 Single-stranded DNA-binding protein 3 1 NSPNNISGISNPPGT(1)PR;NSPNNISGISNPPGT(1)PR;NSPNNISGISNPPGT(1)PR 197.94 6.86E-13 40730700 2351.37 2033.8 2901.64 2220.18 1785.85 1900.42 2083.61 2307.73 1567.19 2771.31 TRUE FALSE 2384.296435 2255.857162 2169.085095 2077.787592 2029.113005 2237.432804 2478.96412 2111.673932 1717.725602 2206.515501 1.080570897 1.022361801 0.983036418 0.941660093 0.919600612 1.014011822 1.1234746 0.957017493 0.778478828 1 11.10755417 -5.490945055 1.963744048 0.967271899 1.08889786 0.172373721 0.081509919 0.977240532 5.688414952 0.023725256 0.181906375 3.23E-06 5.490945055 0.121625961 NSQEDS(ph)EDSEDKDVK ddPTM_K562_Paclitaxel_30min_R1 1 NSQEDSEDSEDKDVK 15 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 NS(0.007)QEDS(0.945)EDS(0.048)EDKDVK 76.329 0.02407 41244000 2462.7 1406.7 5065.6 2623.8 1857.8 1613.4 1377.9 2299.5 1664.2 3520.9 TRUE FALSE 2497.185398 1560.288263 3786.726629 2455.521212 2110.863813 1899.513837 1639.349332 2104.143122 1824.053846 2803.338647 0.890789773 0.556582154 1.350791719 0.875927428 0.752982097 0.677589858 0.584784622 0.750584709 0.650671958 1 11.45293032 -6.76317543 4.092307899 0.710278347 0.926825167 0.155639182 0.206303248 0.363622379 13.8159383 0.064169203 0.07870367 1.73E-07 6.76317543 0.216546821 NSS(ph)GPQSGWMK ddPTM_K562_Paclitaxel_30min_R1 2 NSSGPQSGWMK 11 0 F8VXG7;Q99590-2;Q99590 F8VXG7 SCAF11 Protein SCAF11 1 NS(0.022)S(0.978)GPQSGWMK;NS(0.084)S(0.813)GPQS(0.104)GWMK 149.69 0.00041613 38871000 4845.6 4053.6 8774.3 5357 3739.9 3780.7 3460.6 5870.5 3495.2 7149.5 TRUE FALSE 4913.45335 4496.185756 6559.119446 5013.425997 4249.337697 4451.154061 4117.230784 5371.764382 3830.929577 5692.427976 0.863155998 0.78985378 1.152253392 0.880718389 0.746489497 0.781942974 0.723282016 0.943668397 0.672986921 1 12.47482842 -6.528831902 23.46753046 0.80369134 0.936551226 0.16304754 0.126039453 118.4962933 467109.9781 0.036184569 0.04688445 2.96E-07 6.528831902 0.132859886 NSS(ph)MS(ph)LDEKSRTMS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 NSSMSLDEKSRTMSR 15 2 E9PNV5;A0A0A0MTL4;A0A0A0MTE8;Q8IVL1-6;Q8IVL1-5;Q8IVL1-4;Q8IVL1-8;Q8IVL1-9;Q8IVL1-10;Q8IVL1-13;Q8IVL1-12;Q8IVL1-11;Q8IVL1-3;Q8IVL1-2;Q8IVL1 E9PNV5 NAV2 Neuron navigator 2 3 NS(0.361)S(0.819)MS(0.819)LDEKS(0.05)RT(0.037)MS(0.913)R 58.564 0.025797 47688000 2622.7 2818.5 3300.4 3276 2756.1 2782.7 2667.8 3219.7 1126.7 2914 TRUE FALSE 2659.425892 3126.233362 2467.173201 3065.892023 3131.527481 3276.172774 3174.001123 2946.166388 1234.924569 2320.1252 1.146242406 1.347441664 1.063379339 1.32143387 1.349723489 1.412067234 1.368030106 1.269830778 0.532266349 1 11.17998694 -8.742740895 24.58502109 0.766133456 1.289884231 0.671275427 0.145138361 92.71472307 121903.7122 0.094927479 0.035732931 1.81E-09 8.742740895 0.523750775 NSS(ph)QDDLFPTSDTPR ddPTM_K562_Paclitaxel_30min_R1 1 NSSQDDLFPTSDTPR 15 0 Q9H6T3;Q9H6T3-2;Q9H6T3-3 Q9H6T3 RPAP3 RNA polymerase II-associated protein 3 1 NS(0.189)S(0.811)QDDLFPTSDTPR 100.23 0.0051925 7599800 639.18 515.74 816.68 772.28 514.27 621.61 606.48 548.01 784.19 743.01 TRUE FALSE 648.130492 572.0502373 610.4990334 722.7494174 584.3222807 731.8438057 721.556414 501.4531299 859.5149534 591.5841542 1.095584605 0.966980324 1.031973269 1.221718689 0.987724699 1.23709163 1.219702064 0.847644627 1.452903948 1 9.208439599 -6.119726964 9.243943337 1.132946096 1.023448299 0.08388727 0.160369461 0.846494671 60.66792875 0.040728689 0.070727702 7.59E-07 6.119726964 -0.109497797 NSS(ph)SESAIVPK ddPTM_K562_Paclitaxel_30min_R1 1 NSSSESAIVPK 11 0 Q5THJ4-2;Q5THJ4;A0A2R8YD87;H3BLS7 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 1 NS(0.005)S(0.982)S(0.011)ES(0.003)AIVPK 129.76 0.00097984 10294000 2519.5 1983 4845.4 2798 1898.3 1962.3 1762.5 2350 2149.2 3727.9 TRUE FALSE 2554.780773 2199.510646 3622.118843 2618.548803 2156.880598 2310.286353 2096.925174 2150.352832 2355.640263 2968.151934 0.860731132 0.741037081 1.220327976 0.882215217 0.726674593 0.778358522 0.706475012 0.724475323 0.793638707 1 11.53534923 -6.586852173 6.329802554 0.77156357 0.941454403 0.199412753 0.136316316 0.290646141 21.80621858 0.040289331 0.052353736 2.59E-07 6.586852173 0.169890833 NSSDAKLEPTNVQTVTCS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 NSSDAKLEPTNVQTVTCSPR 20 1 J3KTI7;J3QR52;J3QLN7;Q99741 J3KTI7 CDC6 Cell division control protein 6 homolog 1 NSSDAKLEPTNVQT(0.001)VT(0.065)CS(0.935)PR;NSSDAKLEPT(0.002)NVQT(0.024)VT(0.038)CS(0.935)PR 105.32 0.00028112 62214000 6034.8 4830.4 9646.7 5529.8 4729.5 5510.3 3851 6254.9 5080.5 8286.8 TRUE FALSE 6119.305819 5357.799407 7211.271276 5175.143378 5373.737971 6487.474337 4581.707146 5723.507203 5568.504725 6597.945611 0.927456239 0.812040554 1.092957066 0.784356781 0.81445624 0.983256716 0.694414204 0.867468079 0.843975542 1 12.68780117 NSSLGSPSNLCGS(ph)PPGSIR ddPTM_K562_Paclitaxel_30min_R1 2 NSSLGSPSNLCGSPPGSIR 19 0 Q9C0B0 Q9C0B0 UNK RING finger protein unkempt homolog 1 NSSLGSPSNLCGS(1)PPGSIR;NSSLGSPS(0.003)NLCGS(0.997)PPGS(0.001)IR 222.92 9.20E-37 56547000 2141.6 1731.57 2855.6 2600.88 2149.41 1922.29 1799.9 2077.33 1820.43 2656.21 TRUE FALSE 2171.589007 1920.628668 2134.668462 2434.071198 2442.196032 2263.181141 2141.421629 1900.84785 1995.290435 2114.872944 1.026817717 0.908153217 1.009360145 1.150930227 1.154771987 1.070126292 1.012553324 0.898800023 0.94345641 1 11.04635528 -8.048395143 4.80365973 0.941719134 1.053225679 0.312398462 0.070082072 0.284715378 14.54689846 0.038534603 0.022425987 8.95E-09 8.048395143 0.111506545 NSSLGSPSNLCGSPPGS(ph)IR ddPTM_K562_Paclitaxel_30min_R1 1 NSSLGSPSNLCGSPPGSIR 19 0 Q9C0B0 Q9C0B0 UNK RING finger protein unkempt homolog 1 NSSLGS(0.002)PS(0.009)NLCGS(0.256)PPGS(0.733)IR 75.611 0.011104 12054000 392.92 316.48 468.36 350.86 259.29 261.16 287.03 303.36 200.71 300.76 TRUE FALSE 398.4220923 351.0343567 350.1167254 328.35741 294.6096878 307.4730591 341.4924441 277.5876745 219.9890923 239.4649469 1.66380131 1.465911238 1.462079231 1.37121284 1.230283144 1.284000281 1.426064435 1.159199616 0.918669288 1 7.903670678 -2 0.135226674 0.852895014 3.52956737 0.775528146 0.102432862 39.51563335 0.35941591 0.52195352 20.31011917 0.01 2 2.676672356 NSSNTSVGS(ph)PSNTIGR ddPTM_K562_Paclitaxel_30min_R1 4 NSSNTSVGSPSNTIGR 16 0 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 NSSNTSVGS(0.99)PS(0.01)NTIGR;NSSNT(0.001)S(0.005)VGS(0.992)PS(0.002)NTIGR;NS(0.102)S(0.04)NT(0.001)SVGS(0.824)PS(0.032)NTIGR;NSSNTSVGS(0.896)PS(0.025)NT(0.079)IGR 302.9 7.79E-202 671163000 7960.9 7213.3 9494.6 8263.4 7249.2 6693.6 6383.4 7886 6894.4 9354.1 TRUE FALSE 8072.377161 8000.872488 7097.570802 7733.42251 8236.66377 7880.615977 7594.616826 7216.035077 7556.637925 7447.729285 1.083870916 1.074270047 0.952984531 1.038359776 1.105929533 1.058123312 1.01972246 0.968890624 1.014623066 1 12.86258492 -7.969190961 4.495120062 0.993559738 1.050230581 0.303043348 0.039483302 0.277802189 13.20190681 0.019186902 0.012175649 1.07E-08 7.969190961 0.056670843 NSSS(ph)PVSPASVPGQR ddPTM_K562_Paclitaxel_30min_R1 3 NSSSPVSPASVPGQR 15 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 NS(0.007)S(0.308)S(0.581)PVS(0.094)PAS(0.009)VPGQR;NSS(0.008)S(0.982)PVS(0.009)PAS(0.001)VPGQR;NSS(0.021)S(0.978)PVSPASVPGQR 205.52 3.93E-13 80748000 6466.8 5995.4 9397.9 7498 6371 6105.6 5690 7113.2 5230.9 7772.6 TRUE FALSE 6557.355152 6649.998047 7025.283913 7017.11184 7238.838062 7188.342433 6769.647796 6508.889261 5733.351317 6188.539854 1.059596497 1.074566571 1.13520864 1.133888123 1.169716643 1.161557104 1.093900655 1.051764942 0.926446537 1 12.59538334 -8.469848602 2.546047833 0.964808694 1.122289449 0.723450232 0.03794474 0.161904567 1.976617046 0.031703116 0.011273161 3.39E-09 8.469848602 0.157480755 NSSSPVS(ph)PASVPGQR ddPTM_K562_Paclitaxel_30min_R1 1 NSSSPVSPASVPGQR 15 0 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 NSSS(0.002)PVS(0.985)PAS(0.012)VPGQR 89.466 0.01348 8637300 536.29 599 758.59 450.99 561.37 489.13 465.13 641.09 515.83 641.3 TRUE FALSE 543.7997146 664.4008457 567.0745724 422.06552 637.8380981 575.8703378 553.3859894 586.6254029 565.3777763 510.602708 1.065015336 1.301209013 1.110598443 0.826602588 1.249186673 1.127824684 1.083789766 1.148888155 1.107275319 1 8.996057379 -12.03434287 2.311040977 0.861965904 1.114978509 0.075827907 0.1186241 19999225.52 6322009.757 14621396.13 0.030382985 9.24E-13 12.03434287 0.253012606 NSSTETDQQPHS(ph)PDSSSSVHSIR ddPTM_K562_Paclitaxel_30min_R1 2 NSSTETDQQPHSPDSSSSVHSIR 23 0 Q92613 Q92613 JADE3 Protein Jade-3 1 NSSTETDQQPHS(1)PDSSSSVHSIR;NSSTETDQQPHS(0.765)PDS(0.147)S(0.029)S(0.029)S(0.029)VHS(0.001)IR 128.33 1.26E-08 42806000 3638 3527.6 5099 3950.1 3311.4 3808.8 2926.3 4046 2665.43 4199.8 TRUE FALSE 3688.943224 3912.755298 3811.694386 3696.758266 3762.468742 4484.237202 3481.550149 3702.267046 2921.456461 3343.878455 1.103192976 1.170124857 1.139902194 1.105530095 1.125181071 1.341028767 1.041171261 1.107177517 0.873673042 1 11.70730669 -8.509057324 2.209395524 0.942886029 1.154152273 0.494116864 0.081098862 0.261219879 2.346253682 0.06590353 0.021963945 3.10E-09 8.509057324 0.211266244 NSTLPMEET(ph)SPCSSR ddPTM_K562_Paclitaxel_30min_R1 2 NSTLPMEETSPCSSR 15 0 Q9BYW2;C9JG86;H7C3H4;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 NSTLPMEET(0.634)S(0.352)PCS(0.008)S(0.006)R;NSTLPMEET(0.5)S(0.5)PCSSR 126.07 0.00049189 43757000 5551.9 5233.9 7481.6 5642.6 5265.3 5155.8 4861.7 5988.3 5605.6 6702.9 TRUE FALSE 5629.643729 5805.354902 5592.777549 5280.708891 5982.523002 6070.108739 5784.182195 5479.556537 6144.042926 5336.845301 1.054863578 1.087787743 1.047955718 0.98948135 1.120984901 1.13739642 1.083820472 1.026740748 1.151249958 1 12.38177148 -6.789625581 24.99753209 1.090426743 1.048286218 0.143252659 0.049170854 425.9502312 377760.549 0.015199385 0.01723839 1.62E-07 6.789625581 -0.042140524 NSTLPMEETS(ph)PCSSR ddPTM_K562_Paclitaxel_30min_R1 2 NSTLPMEETSPCSSR 15 0 Q9BYW2;C9JG86;H7C3H4;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 NSTLPMEET(0.233)S(0.755)PCS(0.002)S(0.011)R;NSTLPMEET(0.056)S(0.943)PCSSR 171.15 1.85E-06 43635000 5397.1 5124.8 7350 6406.3 5109 5321.2 4664.7 5202 5207 6749.4 TRUE FALSE 5472.676051 5684.342995 5494.401596 5995.428592 5804.932296 6264.840107 5549.802474 4760.05763 5707.155615 5373.868575 1.018386657 1.057774844 1.022429469 1.11566342 1.080214787 1.165797045 1.03273878 0.885778572 1.062019946 1 12.39174532 -8.004135128 24.9976148 0.976191284 1.077309045 0.354529855 0.056817868 172.6219771 1043533.006 0.023944788 0.015716229 9.91E-09 8.004135128 0.101117761 NSVHEQEAINS(ph)DPELSNCENFQK ddPTM_K562_Paclitaxel_30min_R1 1 NSVHEQEAINSDPELSNCENFQK 23 0 Q8IX90-3;Q8IX90 Q8IX90-3 SKA3 Spindle and kinetochore-associated protein 3 1 NSVHEQEAINS(0.594)DPELS(0.405)NCENFQK 78.352 0.00063516 20631000 2524.7 2073.1 5176.2 3145.5 2289.4 2267.9 1756.3 2955.2 1924.9 3790.9 TRUE FALSE 2560.053589 2299.448069 3869.404292 2943.761709 2601.25504 2670.080222 2089.548756 2704.137314 2109.795246 3018.312499 0.848173802 0.761832338 1.281976036 0.975300506 0.861824294 0.884626831 0.692290396 0.895910319 0.69899828 1 11.55952647 -6.90016854 3.237441177 0.822474935 0.974150378 0.145074309 0.151261505 0.464170894 9.688507151 0.050729276 0.058373101 1.26E-07 6.90016854 0.151675443 NSVLSDPGLDS(ph)PRT(ph)SPVIMAR ddPTM_K562_Paclitaxel_30min_R1 1 NSVLSDPGLDSPRTSPVIMAR 21 1 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 2 NSVLS(0.003)DPGLDS(0.729)PRT(0.634)S(0.634)PVIMAR 71.742 0.018978 12560000 420.62 402.29 462.02 512.7 347.44 415.38 508.64 297.36 311.93 415.18 TRUE FALSE 426.5099777 446.2133827 345.3773368 479.8177168 394.7672102 489.0418108 605.1517847 272.0974119 341.8922702 330.5660881 1.290241174 1.349846214 1.044805711 1.451503146 1.194215694 1.479407079 1.830652951 0.823125607 1.034262989 1 8.36879492 -8.302270731 24.99923618 0.946520604 1.363146208 0.484825468 0.200260266 479.8148579 293767.0198 0.112486488 0.054037759 4.99E-09 8.302270731 0.416625604 NSYNNSQAPS(ph)PGLGSK ddPTM_K562_Paclitaxel_30min_R1 3 NSYNNSQAPSPGLGSK 16 0 Q9UHB7 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 NSYNNS(0.001)QAPS(0.998)PGLGSK;NSYNNSQAPS(0.998)PGLGS(0.002)K;NSYNNSQAPS(1)PGLGSK 248.46 1.45E-63 38469000 8630.2 6868.5 14816.6 9508.3 6100 6230.4 5945.7 8268.3 7793.8 11232.2 TRUE FALSE 8751.049426 7618.426058 11075.96608 8898.480196 6930.923274 7335.273961 7073.865536 7565.856306 8542.429314 8943.071475 0.978528401 0.851880261 1.238496876 0.995013874 0.775004795 0.820218644 0.790988371 0.846001995 0.955200832 1 13.12655469 -6.65142456 6.763478153 0.851476118 1.023343785 0.309764296 0.110095961 0.251238763 14.06725436 0.033009857 0.042652544 2.23E-07 6.65142456 0.171867666 NT(ph)PHRGSSAGGGGSGAAAATAATAGGQHR ddPTM_K562_Paclitaxel_30min_R1 1 NTPHRGSSAGGGGSGAAAATAATAGGQHR 29 1 C9JLG5;C9JA65;O00458 C9JLG5 IFRD1 Interferon-related developmental regulator 1 1 NT(0.448)PHRGS(0.109)S(0.109)AGGGGS(0.335)GAAAATAATAGGQHR 66.372 0.00084941 913790 334.65 210.13 569 563.45 166.8 374.53 333.23 545.63 507.4 568.95 TRUE FALSE 339.3361325 233.072704 425.3489127 527.3128389 189.5209839 440.9476368 396.4586529 499.2753258 556.1380371 452.9976777 0.749090225 0.514511918 0.938964886 1.16405197 0.418370763 0.973399332 0.875189151 1.102158687 1.22768408 1 8.823359844 -8.045285056 1.734532062 1.131298198 0.780849284 0.319499507 0.208478763 0.467179321 2.718330698 0.139586545 0.066735181 9.01E-09 8.045285056 -0.350448914 NT(ph)PSQHSHS(ph)IQHSPER ddPTM_K562_Paclitaxel_30min_R1 1 NTPSQHSHSIQHSPER 16 0 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 2 NT(0.863)PS(0.136)QHS(0.001)HS(0.846)IQHS(0.154)PER 82.56 0.0094057 1035800 189.32 258.08 206.54 319.82 335.85 234.43 176.63 415.49 218.06 510.49 TRUE FALSE 191.9710641 286.2580472 154.3964225 299.3081767 381.598456 276.0028689 210.1446204 380.1915311 239.0056373 406.4518578 0.472309476 0.704285247 0.379863985 0.736392689 0.938852778 0.679054268 0.517022167 0.935391299 0.588029388 1 8.666940672 -14.57843829 0.050174601 2.272548378 3.44E-13 0.323527325 0.165388241 647.8230033 2.57649819 115.606836 28.27477245 2.64E-15 14.57843829 -2.272548378 NT(ph)S(ph)SPEPPT(ph)PGLK ddPTM_K562_Paclitaxel_30min_R1 1 NTSSPEPPTPGLK 13 0 A0A087X0C1;Q5JYT7 A0A087X0C1 KIAA1755 Uncharacterized protein KIAA1755 3 NT(0.907)S(0.997)S(0.095)PEPPT(1)PGLK 89.886 0.025437 8364400 241.43 201.42 506.63 256.73 210.52 224.06 247.05 260.67 138.04 299.46 TRUE FALSE 244.8107649 223.4117168 378.7249906 240.2644869 239.1963881 263.793895 293.9264478 238.5244564 151.2993588 238.4298876 1.02676207 0.937012213 1.588412402 1.007694502 1.003214784 1.106379312 1.232758404 1.000396632 0.634565407 1 7.897421281 -8.539237167 9.628963519 0.816617531 1.128002994 0.295862722 0.19156415 0.321048141 169.1466245 0.125795052 0.048587932 2.89E-09 8.539237167 0.311385463 NT(ph)SIGEEFISTEDVELEEAIRR ddPTM_K562_Paclitaxel_30min_R1 1 NTSIGEEFISTEDVELEEAIRR 22 1 Q9Y4E5;Q9Y4E5-2 Q9Y4E5 ZNF451 Zinc finger protein 451 1 NT(0.779)S(0.221)IGEEFISTEDVELEEAIRR 91.079 0.00051882 5420900 165.02 245.5 351.04 126.32 181.47 236.92 120.7 210.59 300.34 231.73 TRUE FALSE 167.3307891 272.3045202 262.4156104 118.2184006 206.1892863 278.9344355 143.6021949 192.699065 329.188999 184.5032988 0.906925731 1.47587887 1.422281401 0.640738682 1.117537126 1.511812728 0.778317764 1.044420703 1.784190316 1 7.527502801 NTADHDES(ph)PPRT(ph)PTGNAPSSESDIDISSPNVSHDESIAK ddPTM_K562_Paclitaxel_30min_R1 1 NTADHDESPPRTPTGNAPSSESDIDISSPNVSHDESIAK 39 1 O95251;O95251-4 O95251 KAT7 Histone acetyltransferase KAT7 2 NT(0.045)ADHDES(0.34)PPRT(0.34)PT(0.34)GNAPS(0.22)S(0.22)ES(0.22)DIDIS(0.131)S(0.131)PNVS(0.014)HDESIAK 42.782 0.0078826 19135000 882 908.51 1740.9 1428.6 1070.1 985.34 787.82 1231.3 1029.4 1248.6 TRUE FALSE 894.3507212 1007.704194 1301.388264 1336.97599 1215.865737 1160.076214 937.3047323 1126.693379 1128.278469 994.1346346 0.899627364 1.01364962 1.309066417 1.34486411 1.223039309 1.16692063 0.942834803 1.133340838 1.13493528 1 9.957297437 -7.577499154 24.99470877 1.06260174 1.171414495 0.127435333 0.133774138 216.5127205 99075.76105 0.056524239 0.043783493 2.65E-08 7.577499154 0.108812755 NTAKLDRETEELHHDR ddPTM_K562_Paclitaxel_30min_R1 1 NTAKLDRETEELHHDR 16 2 O60869-2;O60869-3;O60869 O60869-2 EDF1 Endothelial differentiation-related factor 1 0 42.818 0.029068 3969100 2080.2 1745.3 3623.3 2328.8 1713.3 1605.5 1459.1 2196.7 2961.1 2338.3 FALSE TRUE 2109.329218 1935.857756 2708.553103 2179.441191 1946.680466 1890.212883 1735.956608 2010.076624 3245.526886 1861.753176 1.132980056 1.039803654 1.45484006 1.170639169 1.045616836 1.015286509 0.932431125 1.079668696 1.743263783 1 10.8624461 -11.57477927 3.065595096 0.991842193 1.164172814 0.047975226 0.230951098 143796930.4 140203792.6 9397983.997 0.057829864 2.66E-12 11.57477927 0.172330621 NTENCDFLFS(ph)PPEVTGR ddPTM_K562_Paclitaxel_30min_R1 1 NTENCDFLFSPPEVTGR 17 0 A0A494BZT8;Q9Y6A5;E7EMT0;C9JA91;F8WC55;Q8IX09;C9JWI7 A0A494BZT8 TACC3;ERIC-1s Transforming acidic coiled-coil-containing protein 3 1 NTENCDFLFS(0.988)PPEVT(0.012)GR 120.82 0.00014097 6678100 554.16 452.62 730 735.54 409.74 414.51 490.8 583.39 442.76 719 TRUE FALSE 561.9199497 502.0385823 545.7024715 688.3657566 465.553525 488.0175285 583.9267379 533.8273781 485.2890763 572.4674053 0.981575448 0.876973217 0.953246362 1.202454061 0.813240231 0.852480899 1.020017441 0.93250266 0.847714773 1 9.161049742 NTFTAWS(ph)DEESDYEIDDRDVNK ddPTM_K562_Paclitaxel_30min_R1 3 NTFTAWSDEESDYEIDDRDVNK 22 1 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 NTFT(0.014)AWS(0.727)DEES(0.001)DY(0.258)EIDDRDVNK;NT(0.006)FT(0.238)AWS(0.751)DEES(0.001)DY(0.004)EIDDRDVNK;NT(0.002)FT(0.066)AWS(0.873)DEES(0.046)DY(0.013)EIDDRDVNK 107.95 6.01E-05 177652000 3943.8 3424.11 8301.2 5106.8 3871.27 3415.88 2833.08 4811.5 3342.45 6266.6 TRUE FALSE 3999.025368 3797.965909 6205.459392 4779.272705 4398.602515 4021.638357 3370.64214 4402.733043 3663.507257 4989.46348 0.801494065 0.761197256 1.243712759 0.957873071 0.881578256 0.806026214 0.675552022 0.882406106 0.734248737 1 12.28466897 -7.040034885 3.269405939 0.804173914 0.948426582 0.129555474 0.144908547 0.475271902 10.28925924 0.050975301 0.053814686 9.12E-08 7.040034885 0.144252668 NTFTAWSDEES(ph)DYEIDDRDVNK ddPTM_K562_Paclitaxel_30min_R1 1 NTFTAWSDEESDYEIDDRDVNK 22 1 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50 Q6PKG0 LARP1 La-related protein 1 1 NTFT(0.003)AWS(0.049)DEES(0.944)DY(0.004)EIDDRDVNK 109.37 4.91E-05 105730000 2001.2 1430.8 3672.8 2377 1557.3 1379.6 1398.5 2246.2 1461.9 2520.4 TRUE FALSE 2029.222974 1587.019583 2745.556215 2224.549859 1769.430625 1624.252689 1663.858074 2055.37129 1602.322027 2006.741097 1.011203178 0.790844213 1.368166636 1.108538547 0.881743354 0.809398229 0.8291344 1.024233417 0.798469733 1 10.97063878 -6.768029487 24.74248109 0.884585137 1.07109062 0.258217085 0.148578296 195.0411614 732278.4002 0.047221368 0.054809877 1.71E-07 6.768029487 0.186505482 NTGNGTQSSMGS(ph)PLTRPTPR ddPTM_K562_Paclitaxel_30min_R1 2 NTGNGTQSSMGSPLTRPTPR 20 1 E3W994;J3KR49;O75122;E7ERI8;E7EW49;O75122-3;A0A0U1RQI6;H7C4I5 E3W994 CLASP2 CLIP-associating protein 2 1 NTGNGTQS(0.002)S(0.269)MGS(0.674)PLT(0.043)RPT(0.011)PR;NTGNGTQS(0.001)S(0.244)MGS(0.742)PLT(0.012)RPTPR 199.75 6.37E-19 25909000 2279.1 2393.6 3665.1 2744.7 2064.13 2546.3 2163.4 2386.4 2027.15 3105.8 TRUE FALSE 2311.014432 2654.941343 2739.800176 2568.667227 2345.299452 2997.850553 2573.893856 2183.660425 2221.866815 2472.836255 0.934560235 1.073642194 1.107958592 1.038753464 0.948424889 1.212312601 1.040867082 0.883059046 0.898509479 1 11.271951 -8.207867535 6.93826534 0.918287297 1.056236483 0.336881079 0.079093126 0.251286464 27.55623051 0.037689033 0.021468022 6.20E-09 8.207867535 0.137949185 NTLQPEEALSTSDPRVS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 NTLQPEEALSTSDPRVSPR 19 1 Q9BXL7 Q9BXL7 CARD11 Caspase recruitment domain-containing protein 11 1 NTLQPEEALSTSDPRVS(1)PR;NTLQPEEALSTSDPRVS(1)PR 170.22 2.06E-12 39681000 2413.62 2436.9 3066.1 2747.45 2354.1 2044.78 2281.31 2784.7 2303.73 3022.5 TRUE FALSE 2447.418127 2702.968983 2292.025134 2571.240854 2674.768275 2407.393023 2714.176663 2548.122353 2525.01356 2406.512841 1.016997743 1.123189096 0.95242589 1.068450918 1.111470602 1.00036575 1.127846325 1.058844279 1.049241673 1 11.23272841 -3.064114127 18.70208208 1.054697259 1.065692553 0 0.055969316 0 0 0.012057143 0 0.000862752 3.064114127 0.010995294 NTPHRGS(ph)SAGGGGSGAAAATAATAGGQHR ddPTM_K562_Paclitaxel_30min_R1 1 NTPHRGSSAGGGGSGAAAATAATAGGQHR 29 1 C9JLG5;C9JA65;O00458 C9JLG5 IFRD1 Interferon-related developmental regulator 1 1 NT(0.174)PHRGS(0.648)S(0.171)AGGGGS(0.006)GAAAATAATAGGQHR 61.558 0.00099546 1038300 139.96 179.16 256.64 215.42 328.45 251.32 273.45 328.31 288 407.14 TRUE FALSE 141.9198718 198.7212947 191.8480579 201.6039254 373.1904507 295.8880733 325.33571 300.4180163 315.6636868 324.1646445 0.437801821 0.613025813 0.591822894 0.621918302 1.151237364 0.912770959 1.003612564 0.926745163 0.973775802 1 8.34058294 -6.665674165 6.297567602 0.986469625 0.563947609 0.885726241 0.075557766 0.066580818 3.671279766 0.022008728 0.028425005 2.16E-07 6.665674165 -0.422522016 NTPS(ph)PDVTLGTNPGTEDIQFPIQK ddPTM_K562_Paclitaxel_30min_R1 1 NTPSPDVTLGTNPGTEDIQFPIQK 24 0 M0R2Z9;Q8IX01-4;Q8IX01;M0R3F6;Q8IX01-3 M0R2Z9 SUGP2 SURP and G-patch domain-containing protein 2 1 NT(0.18)PS(0.815)PDVT(0.004)LGT(0.001)NPGTEDIQFPIQK 106.33 2.91E-06 7346800 2300.4 2000.7 4008.2 2500.9 1806.6 1810 1778.3 2652.7 2063.8 3128.8 TRUE FALSE 2332.612697 2219.143192 2996.280337 2340.503468 2052.689506 2130.978086 2115.723142 2427.336577 2262.037211 2491.148843 0.936360228 0.890811161 1.202770499 0.93952775 0.82399312 0.855419817 0.849296158 0.974384403 0.90802973 1 11.28259551 -6.515086685 24.98999851 0.894363216 1.010244587 0.217259351 0.091125376 524.2996167 1681488.687 0.02696209 0.03644559 3.05E-07 6.515086685 0.115881371 NTPSPDVT(ph)LGTNPGTEDIQFPIQK ddPTM_K562_Paclitaxel_30min_R1 1 NTPSPDVTLGTNPGTEDIQFPIQK 24 0 M0R2Z9;Q8IX01-4;Q8IX01;M0R3F6;Q8IX01-3 M0R2Z9 SUGP2 SURP and G-patch domain-containing protein 2 1 NT(0.104)PS(0.324)PDVT(0.435)LGT(0.137)NPGTEDIQFPIQK 56.488 0.016407 8348500 894.82 878.54 1822.8 1167 965.56 915.23 850.23 1255.1 995.56 1578.8 TRUE FALSE 907.3502408 974.4619682 1362.611596 1092.153843 1097.085619 1077.53319 1011.556704 1148.471421 1091.187986 1257.039693 0.721815107 0.775203817 1.083984542 0.868830037 0.872753362 0.857199017 0.804713415 0.913631787 0.868061679 1 10.29581449 NTPSQHS(ph)HSIQHSPER ddPTM_K562_Paclitaxel_30min_R1 1 NTPSQHSHSIQHSPER 16 0 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 NTPSQHS(0.85)HS(0.027)IQHS(0.123)PER 85.054 0.010792 11805000 1767.6 1634.9 1739.1 1650.2 1185.4 1436.3 1214.3 1545.9 1376.1 1799.2 TRUE FALSE 1792.351854 1813.403911 1300.042696 1544.363558 1346.871549 1691.007638 1444.707086 1414.566146 1508.280554 1432.522052 1.251186221 1.265882021 0.907520198 1.078073148 0.940209993 1.180440912 1.008506001 0.987465529 1.052884702 1 10.48434163 -5.744044395 24.99997689 1.023571327 1.258534341 0.641546821 0.07144857 143.6150214 206399.5295 0.017402731 0.0458128 1.80E-06 5.744044395 0.234963014 NTPSQHSHSIQHS(ph)PER ddPTM_K562_Paclitaxel_30min_R1 3 NTPSQHSHSIQHSPER 16 0 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 NTPSQHSHSIQHS(0.999)PER;NTPSQHS(0.005)HS(0.007)IQHS(0.988)PER;NTPSQHS(0.001)HS(0.012)IQHS(0.987)PER 94.176 0.0052826 194455200 6780.8 6530.84 9234.6 7812.42 6498.2 6128.9 5370.102 7181.77 5300.9 7673.99 TRUE FALSE 6875.752121 7243.899197 6903.211018 7311.366348 7383.364855 7215.774361 6389.050821 6571.633811 5810.07513 6110.026626 1.125322775 1.185575717 1.129816847 1.196617756 1.208401421 1.180972654 1.045666609 1.075549128 0.950908316 1 12.57696295 -8.040711081 1.628510008 0.995334151 1.173351125 0.791785702 0.038529403 0.174131063 0.889145405 0.025798529 0.012164625 9.11E-09 8.040711081 0.178016974 NTPSQHSHSIQHSPERS(ph)GSGSVGNGSSR ddPTM_K562_Paclitaxel_30min_R1 1 NTPSQHSHSIQHSPERSGSGSVGNGSSR 28 1 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 NT(0.003)PS(0.02)QHS(0.007)HS(0.049)IQHS(0.217)PERS(0.267)GS(0.217)GS(0.217)VGNGS(0.003)S(0.001)R 46.399 0.015704 1021800 0 73.019 59.564 210.64 0 117.87 130.23 0 0 117.4 TRUE FALSE 0 80.99146135 44.52633152 197.1304932 0 138.7725895 154.9404627 0 0 93.47381556 0 0.866461488 0.47635085 2.108938124 0 1.484614581 1.657581449 0 0 1 6.54649038 -5.261168165 24.99945244 0.859666405 8.55E-05 0.113808579 0.705099849 51.48933921 4743673.715 0.175830082 0.995388133 5.48E-06 5.261168165 -0.859580947 NTPSQHSHSIQHSPERSGSGS(ph)VGNGSSR ddPTM_K562_Paclitaxel_30min_R1 1 NTPSQHSHSIQHSPERSGSGSVGNGSSR 28 1 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 NTPSQHSHSIQHS(0.268)PERS(0.186)GS(0.233)GS(0.293)VGNGS(0.015)S(0.005)R 48.118 0.01094 905520 0 0 0 0 0 139.21 0 51.373 192.28 0 TRUE FALSE 0 0 0 0 0 163.8969389 0 47.00854299 210.7493531 0 0 NTS(ph)IGEEFISTEDVELEEAIRR ddPTM_K562_Paclitaxel_30min_R1 3 NTSIGEEFISTEDVELEEAIRR 22 1 Q9Y4E5;Q9Y4E5-2 Q9Y4E5 ZNF451 Zinc finger protein 451 1 NT(0.149)S(0.851)IGEEFISTEDVELEEAIRR;NT(0.05)S(0.949)IGEEFISTEDVELEEAIRR;NT(0.069)S(0.93)IGEEFIS(0.001)TEDVELEEAIRR 121.58 9.24E-07 17260300 701 811.63 880.79 1001.12 647.7 753.41 711.4 812.7 699.14 943.65 TRUE FALSE 710.8161628 900.2465082 658.423671 936.912644 735.9277057 887.0166851 846.3844362 743.6560623 766.2955208 751.333612 0.946072625 1.198198102 0.876339965 1.246999507 0.979495252 1.180589649 1.12650948 0.989781437 1.019913802 1 9.553309835 -8.275821789 24.36313677 1.003635704 1.082470624 0.088334183 0.11144402 1428.609394 2419981.514 0.055881414 0.027066394 5.30E-09 8.275821789 0.07883492 NTSAEKELSSPIS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 NTSAEKELSSPISPK 15 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 NTSAEKELSS(0.002)PIS(0.998)PK;NTSAEKELSSPIS(1)PK 132.5 7.33E-05 52641300 4876 2635.18 9004.1 4849.4 2845.61 2421.11 1850.38 3965.4 4063.5 5682.7 TRUE FALSE 4944.279044 2922.897864 6730.903594 4538.381189 3233.230259 2850.459864 2201.479945 3628.514519 4453.817331 4524.562621 1.092763977 0.646006721 1.487636299 1.003054122 0.714595096 0.629996776 0.486561935 0.801959178 0.984364171 1 12.14356262 -6.705973056 5.429554151 0.738384703 1.063926213 0.256535064 0.237735794 0.263209493 16.09076887 0.072446113 0.092722486 1.97E-07 6.705973056 0.32554151 NTSGLPAEPESVSS(ph)PPTLHMK ddPTM_K562_Paclitaxel_30min_R1 2 NTSGLPAEPESVSSPPTLHMK 21 0 Q8IWI9-3;Q8IWI9 Q8IWI9-3 MGA MAX gene-associated protein 1 NTSGLPAEPESVS(0.25)S(0.749)PPTLHMK;NTSGLPAEPES(0.002)VS(0.18)S(0.818)PPTLHMK 125.39 1.67E-07 30909000 3244.7 2815.4 5824.3 4281.8 3118.7 2663.5 2803.1 3527.3 2508.1 4654.5 TRUE FALSE 3290.135811 3122.794893 4353.883431 4007.184513 3543.51974 3135.834328 3334.973592 3227.633848 2749.014211 3705.910345 0.887807719 0.842652574 1.17484856 1.08129559 0.956180644 0.846171125 0.899906712 0.870942238 0.741791883 1 11.85561226 -7.111698361 4.403642506 0.866090787 1.000448748 0.241366771 0.104765632 0.344539223 10.96129354 0.037349696 0.037714776 7.73E-08 7.111698361 0.134357961 NTSLPPLWS(ph)PEAER ddPTM_K562_Paclitaxel_30min_R1 3 NTSLPPLWSPEAER 14 0 P49790-2;P49790;P49790-3 P49790-2 NUP153 Nuclear pore complex protein Nup153 1 NTSLPPLWS(1)PEAER;NTSLPPLWS(1)PEAER;NTSLPPLWS(1)PEAER 151.11 2.72E-05 298255000 8995.2 8165.3 10728.7 9781.8 8152 8275 7784.8 8967 8121.1 10760.9 TRUE FALSE 9121.160553 9056.815067 8020.106994 9154.43913 9262.440414 9742.455063 9261.925161 8205.19738 8901.167941 8567.822673 1.064583255 1.057073123 0.936072944 1.06846739 1.081072843 1.137098121 1.081012705 0.957675911 1.038906649 1 13.06471291 -8.249488031 24.51849479 0.998718457 1.059843291 0.239111161 0.050588525 916.1461033 1879502.979 0.026284309 0.015003367 5.63E-09 8.249488031 0.061124835 NVAEALGHS(ph)PKDPGGGGGPVR ddPTM_K562_Paclitaxel_30min_R1 1 NVAEALGHSPKDPGGGGGPVR 21 1 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 NVAEALGHS(1)PKDPGGGGGPVR 53.768 0.030323 18936000 1470.8 1296.4 2298.3 1912.2 1206.9 1286.7 1206.7 1598.6 1344.2 1895.3 TRUE FALSE 1491.395738 1437.945336 1718.06574 1789.560051 1371.300213 1514.878179 1435.665026 1462.788952 1473.316416 1509.03682 0.988309707 0.952889497 1.138518105 1.185895551 0.908725483 1.003870919 0.951378394 0.969352724 0.976329005 1 10.55941229 -6.789168528 24.99999944 0.967678598 1.063446355 0.340582188 0.066836614 279.4584555 251952.1551 0.022477385 0.025492042 1.62E-07 6.789168528 0.095767757 NVALLSQLYHS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 2 NVALLSQLYHSPAR 14 0 Q15717;Q15717-2 Q15717 ELAVL1 ELAV-like protein 1 1 NVALLSQLYHS(1)PAR;NVALLSQLYHS(1)PAR 180.32 3.04E-06 149959000 6103.8 5758.5 7159.2 6598 5428.6 5540.8 4977 6599.1 4370.4 7689.5 TRUE FALSE 6189.272032 6387.232504 5351.771416 6174.833812 6168.067227 6523.383083 5921.359768 6038.465265 4790.196447 6122.375679 1.010926535 1.043260466 0.87413313 1.008568264 1.007463042 1.06549866 0.967167008 0.986294468 0.78240812 1 12.57987586 -8.563248028 24.988018 0.888919443 0.995837051 0.271041188 0.068515712 189.1136043 117055.5253 0.044269926 0.016732509 2.73E-09 8.563248028 0.106917608 NVALLSQLYHS(ph)PARR ddPTM_K562_Paclitaxel_30min_R1 1 NVALLSQLYHSPARR 15 1 Q15717;Q15717-2 Q15717 ELAVL1 ELAV-like protein 1 1 NVALLSQLY(0.056)HS(0.944)PARR 85.046 0.008053 73968000 4138.8 3275.6 4232.3 4615.8 3449.2 3366.6 3791.9 3814.2 3010.3 4896 TRUE FALSE 4196.755969 3633.241085 3163.803521 4319.763248 3919.039435 3963.619241 4511.39323 3490.159903 3299.452765 3898.192513 1.076590229 0.932032236 0.811607818 1.108145181 1.005347843 1.016783863 1.157303857 0.895327743 0.846405803 1 11.92858962 NVDAAVS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 NVDAAVSPR 9 0 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 NVDAAVS(1)PR;NVDAAVS(1)PR 101.56 0.010375 98201000 4787.4 4206.9 5952.4 5300.9 4125.8 4530.4 4719 5541.3 4816.9 6502.4 TRUE FALSE 4854.43837 4666.223569 4449.643002 4960.924 4687.80381 5333.80283 5614.405615 5070.531977 5279.584767 5177.207311 0.937655782 0.901301279 0.859467805 0.958223942 0.905469596 1.030247102 1.084446745 0.979395198 1.019774649 1 12.33795837 -7.26175392 24.98839387 1.025339568 0.911408232 0.716712267 0.034666354 15.39980564 1223379.74 0.012080155 0.011303864 5.47E-08 7.26175392 -0.113931335 NVDNAEGS(ph)DTDY ddPTM_K562_Paclitaxel_30min_R1 1 NVDNAEGSDTDY 12 0 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 NVDNAEGS(0.997)DT(0.003)DY 161.48 0.0014038 16969000 3282.9 3075.6 4174.3 3334.5 2655.4 2838.8 2358.2 3383.9 2995.8 3612.9 TRUE FALSE 3328.870729 3411.404409 3120.446338 3120.640095 3017.110436 3342.221321 2805.656139 3096.416573 3283.559976 2876.588997 1.157228486 1.185919995 1.084773091 1.084840448 1.048850023 1.161869605 0.97534133 1.076419529 1.14147693 1 11.49014339 -2.000000002 0.333701972 1.054205059 2.425800641 0.310638963 0.055501922 70.9450428 1.009525997 0.04886967 60.23909925 0.01 2.000000002 1.371595581 NVES(ph)LKCAS(ph)MK ddPTM_K562_Paclitaxel_30min_R1 1 NVESLKCASMK 11 1 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y7B1;A0A2R8YG73;A0A2R8Y4W8;A0A2R8Y4X4;A0A2R8YG52;A0A087WXD9;A0A2R8YGU1 Q3V6T2 CCDC88A Girdin 2 NVES(1)LKCAS(1)MK 68.277 0.019693 0 0 0 53.674 65.173 71.492 0 0 79.446 0 0 TRUE FALSE 0 0 40.12333487 60.99309548 81.23042077 0 0 72.69656641 0 0 0 NVFEVGPGDS(ph)PTFPR ddPTM_K562_Paclitaxel_30min_R1 1 NVFEVGPGDSPTFPR 15 0 Q16584-2;Q16584 Q16584-2 MAP3K11 Mitogen-activated protein kinase kinase kinase 11 1 NVFEVGPGDS(0.99)PT(0.01)FPR 110.22 0.0021008 7909100 1518.4 1628.5 1625.1 1360 1308 1229.4 1262.1 1540.2 1439.4 1720.9 TRUE FALSE 1539.662285 1806.305137 1214.823406 1272.775687 1486.171745 1447.416828 1501.576886 1409.350396 1577.660801 1370.179635 1.123693744 1.318298047 0.886616159 0.928911549 1.084654673 1.056370122 1.095897828 1.028588048 1.151426251 1 10.42014933 -5.752438891 24.99999903 1.03185057 1.220995876 0.444989133 0.085697127 178.8447623 496753.2992 0.022399654 0.057445192 1.77E-06 5.752438891 0.189145306 NVHS(ph)EDFENR ddPTM_K562_Paclitaxel_30min_R1 1 NVHSEDFENR 10 0 Q9H2P0;A0A669KBJ7 Q9H2P0 ADNP Activity-dependent neuroprotector homeobox protein 1 NVHS(1)EDFENR 78.287 0.029273 18299000 1633.1 1769.7 2824.3 1961.2 1715.3 1595.4 1591.3 1954.8 1653.4 2348.6 TRUE FALSE 1655.968439 1962.921831 2111.270535 1835.41741 1948.9529 1878.321789 1893.240868 1788.727539 1812.216458 1869.954031 0.885566389 1.049716623 1.129049431 0.981530765 1.042246423 1.004474847 1.01245316 0.956562305 0.969123533 1 10.86878709 -8.131947563 4.489023573 0.972384787 1.020937461 0.083119876 0.058454828 0.525508118 16.69812357 0.02917268 0.016348651 7.38E-09 8.131947563 0.048552674 NVIPDTPPS(ph)TPLVPSR ddPTM_K562_Paclitaxel_30min_R1 2 NVIPDTPPSTPLVPSR 16 0 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 NVIPDT(0.337)PPS(0.548)T(0.11)PLVPS(0.005)R;NVIPDT(0.175)PPS(0.512)T(0.132)PLVPS(0.181)R 109.04 0.0012429 29166000 3735.7 3548.4 5131.7 4371.5 3732.6 3152.5 3123.3 4081 3373.8 3895.6 TRUE FALSE 3788.011326 3935.826312 3836.138867 4091.131556 4241.043313 3711.551612 3715.92987 3734.293577 3697.868565 3101.674582 1.221279417 1.268935927 1.236796049 1.319007345 1.367339868 1.19662831 1.198039889 1.203960467 1.192216806 1 11.59883162 -9.420980139 0.536676405 0.990853349 1.275635545 0.73447511 0.047408416 0.900546176 0.49881392 0.072329624 0.025330445 3.79E-10 9.420980139 0.284782196 NVLFAS(ph)SGY(ph)FKMLLS(ph)QNS(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 NVLFASSGYFKMLLSQNSK 19 1 D3DPQ1;Q96BR9-2;Q96BR9 D3DPQ1 ZBTB8A Zinc finger and BTB domain-containing protein 8A 4 NVLFAS(0.518)S(0.518)GY(0.964)FKMLLS(1)QNS(1)K 42.633 0.030234 10894000 331.23 318.48 442.65 274.31 284.23 448.08 333.57 398.77 359.9 547.24 TRUE FALSE 335.8682419 353.2527234 330.8975329 256.7169844 322.9469381 527.5406966 396.8631661 364.8919995 394.4700031 435.7121876 0.770848857 0.810747859 0.759440618 0.589189359 0.741193263 1.21075497 0.910837882 0.837461081 0.90534535 1 8.767231658 -7.052839247 24.99385811 0.960747081 0.730702957 0.554747402 0.106618613 277.2811759 131157.9394 0.037013362 0.037013653 8.85E-08 7.052839247 -0.230044124 NVMT(ph)IIT(ph)GYPT(ph)PGSK ddPTM_K562_Paclitaxel_30min_R1 1 NVMTIITGYPTPGSK 15 0 A6NKG5 A6NKG5 RTL1 Retrotransposon-like protein 1 3 NVMT(0.991)IIT(0.986)GY(0.429)PT(0.542)PGS(0.052)K 40.015 0.030606 0 342.71 482.86 349.69 378.08 227.18 454.33 313.11 264.7 470.59 298.51 TRUE FALSE 347.5089974 535.5802877 261.4064346 353.831641 258.1257622 534.8990464 372.520988 242.2120828 515.7922722 237.6734981 1.462127667 2.253428724 1.099855207 1.488729891 1.086051933 2.250562434 1.567364434 1.01909588 2.170171585 1 7.892837234 -11.83371147 2.680144407 0.789660596 1.586977993 0.135209476 0.453976462 24835729.16 19032235.61 33751617.79 0.108398911 1.47E-12 11.83371147 0.797317397 NVMVEPHRHEGVFICR ddPTM_K562_Paclitaxel_30min_R1 1 NVMVEPHRHEGVFICR 16 1 M0R2U2;M0R1H0;M0R2B0;M0R0P1;M0QXL5;M0R2Q4;P22087 M0R2U2 FBL rRNA 2-O-methyltransferase fibrillarin 0 122.97 0.0001067 27603000 2124.5 1827 2023.5 1956.3 1502.6 1883.9 1548.4 2092.4 1559.5 2119.1 FALSE TRUE 2154.249555 2026.478039 1512.642399 1830.831674 1707.279559 2217.983214 1842.200817 1914.63756 1709.296943 1687.226257 1.276799449 1.20107071 0.896526114 1.085113313 1.011885366 1.314573671 1.091851676 1.134784118 1.013081047 1 10.72043774 -8.770234358 17.41979006 1.00653361 1.121294551 0.146660561 0.115255169 10.8134237 21372.08463 0.104950932 0.029831004 1.70E-09 8.770234358 0.114760941 NVPHEDICEDS(ph)DIDGDYR ddPTM_K562_Paclitaxel_30min_R1 2 NVPHEDICEDSDIDGDYR 18 0 O00629 O00629 KPNA4 Importin subunit alpha-3 1 NVPHEDICEDS(1)DIDGDYR;NVPHEDICEDS(1)DIDGDYR 141.5 1.04E-10 54860000 3395.5 3154 4103.9 3397.5 2603.6 2768.1 3271.4 4231.3 2729.5 4334.5 TRUE FALSE 3443.047476 3498.364386 3067.819689 3179.599557 2958.254399 3258.983669 3892.131072 3871.824654 2991.680671 3451.126521 0.997659012 1.013687665 0.888932837 0.921322223 0.857185149 0.944324599 1.127785681 1.121901684 0.86687076 1 11.75285165 -7.609277075 10.82360875 1.039173365 0.933104834 0.236105518 0.080271186 0.570115291 67.49739364 0.031486846 0.024376459 2.46E-08 7.609277075 -0.106068531 NVPHEDICEDSDIDGDYR ddPTM_K562_Paclitaxel_30min_R1 1 NVPHEDICEDSDIDGDYR 18 0 O00629 O00629 KPNA4 Importin subunit alpha-3 0 140.89 2.80E-21 0 983.1 1011.5 1435.2 1035.3 880.83 1065.2 944.48 1008.4 719.68 1073 FALSE TRUE 996.8664331 1121.938991 1072.86601 968.9004918 1000.813959 1254.098264 1123.690149 922.7301258 788.8084796 854.322011 1.16685093 1.313250714 1.255809865 1.134116269 1.171471583 1.467945631 1.315300478 1.080072986 0.923315178 1 9.738636143 -8.462736095 3.869097137 0.967825499 1.261225649 0.637338555 0.092369878 0.15381416 4.542185391 0.064600779 0.026525287 3.45E-09 8.462736095 0.29340015 NVPNWHR ddPTM_K562_Paclitaxel_30min_R1 2 NVPNWHR 7 0 B4DV51;F5H018;B5MDF5;J3KQE5;P62826 B4DV51 RAN GTP-binding nuclear protein Ran 0 ; 114.19 0.0075447 32744000 8774.2 8206.8 11081.5 9560.6 8006.8 8002.2 8392.2 9123.9 7708.2 10706.1 FALSE TRUE 8897.065871 9102.846178 8283.838271 8947.425908 9097.461716 9421.277814 9984.57614 8348.767745 8448.607051 8524.190943 1.043743146 1.067883889 0.971803462 1.049651042 1.067252221 1.105240119 1.171322441 0.979420546 0.991133013 1 13.05734719 NVPQEESLEDS(ph)DVDADFK ddPTM_K562_Paclitaxel_30min_R1 3 NVPQEESLEDSDVDADFK 18 0 O00505 O00505 KPNA3 Importin subunit alpha-4 1 NVPQEES(0.006)LEDS(0.994)DVDADFK;NVPQEESLEDS(1)DVDADFK;NVPQEES(0.011)LEDS(0.989)DVDADFK 163.11 1.51E-09 30562800 9920.8 8511.5 18026.8 11901.9 8849.8 7519.3 7485.6 11032.6 6768.8 14538.7 TRUE FALSE 10059.72181 9440.814354 13475.71139 11138.5654 10055.29259 8852.742279 8905.953523 10095.31177 7418.973484 11575.70496 0.869037509 0.815571439 1.164137427 0.962236464 0.868654879 0.76476917 0.769365974 0.872112049 0.640908999 1 13.49881244 -6.951580743 3.64365748 0.799709708 0.957183711 0.238176296 0.119836597 0.320347235 8.86399918 0.039190782 0.043864278 1.12E-07 6.951580743 0.157474004 NVS(ph)PEFVPCEGEGGFGLHK ddPTM_K562_Paclitaxel_30min_R1 1 NVSPEFVPCEGEGGFGLHK 19 0 O94986-3;O94986 O94986-3 CEP152 Centrosomal protein of 152 kDa 1 NVS(1)PEFVPCEGEGGFGLHK 158.05 6.09E-12 32799000 2458.2 2283.7 3862.6 3184.4 2603.8 2018.5 2084.1 2959.5 2106.8 3595.4 TRUE FALSE 2492.622384 2533.042089 2887.438858 2980.166837 2958.481643 2376.452634 2479.547095 2708.072002 2309.167553 2862.655506 0.870737809 0.884857463 1.008657469 1.041049763 1.033474561 0.830156695 0.866170271 0.945999963 0.806652267 1 11.48313835 -7.265235002 24.97906703 0.884944241 0.969494216 0.217730946 0.073561576 523.19695 3443155.535 0.026705086 0.024437986 5.43E-08 7.265235002 0.084549975 NVS(ph)SFPDDATSPLQENR ddPTM_K562_Paclitaxel_30min_R1 1 NVSSFPDDATSPLQENR 17 0 J3QLL0;J3KS65;P52292 J3QLL0 KPNA2 Importin subunit alpha-1 1 NVS(0.574)S(0.352)FPDDAT(0.07)S(0.003)PLQENR 77.137 0.022671 0 569.85 365.19 411.8 266.23 272.92 331.54 276.87 427.71 266.42 630.6 TRUE FALSE 577.8296581 405.0626792 307.8359969 249.1551994 310.0963246 390.3339639 329.4046371 391.3733658 292.0108314 502.0833739 1.150863957 0.806763777 0.613117289 0.496242681 0.617619186 0.777428579 0.656075573 0.779498757 0.581598289 1 8.971783142 -5.322220899 2.856470842 0.675508325 1.202957493 0.517926053 0.132799257 0.259776591 3.202665699 0.033090086 0.295094896 4.76E-06 5.322220899 0.527449168 NVSSAGHGPRS(ph)SPAELSSSSQHLLR ddPTM_K562_Paclitaxel_30min_R1 2 NVSSAGHGPRSSPAELSSSSQHLLR 25 1 Q9UQC2;Q9UQC2-2;E9PJE2 Q9UQC2 GAB2 GRB2-associated-binding protein 2 1 NVS(0.003)S(0.004)AGHGPRS(0.496)S(0.496)PAELSSSSQHLLR;NVS(0.022)S(0.022)AGHGPRS(0.478)S(0.478)PAELSSSSQHLLR 119.18 1.43E-08 116365000 2126.13 1870.88 2657.7 2459.06 2075.79 1784.78 2073.04 2433.64 2324.34 2517.09 TRUE FALSE 2155.90238 2075.149005 1986.730765 2301.346898 2358.547741 2101.285673 2466.388518 2226.887092 2547.603242 2004.105676 1.075742864 1.035448894 0.991330342 1.148316142 1.176857972 1.048490455 1.230667897 1.111162509 1.27119207 1 10.96874287 -6.275733418 23.56284284 1.146968346 1.034301523 0.284861085 0.077121482 414.412217 683132.1487 0.020412553 0.030467651 5.30E-07 6.275733418 -0.112666823 NVSSAGHGPRSS(ph)PAELSSSSQHLLR ddPTM_K562_Paclitaxel_30min_R1 2 NVSSAGHGPRSSPAELSSSSQHLLR 25 1 Q9UQC2;Q9UQC2-2;E9PJE2 Q9UQC2 GAB2 GRB2-associated-binding protein 2 1 NVSS(0.001)AGHGPRS(0.37)S(0.629)PAELSSSSQHLLR;NVS(0.004)S(0.012)AGHGPRS(0.236)S(0.747)PAELSSSSQHLLR 125.92 1.61E-10 104763000 2132.08 1901.83 2793.6 2203.62 1745.23 1885.51 1868.14 2507.7 2598.5 2462.5 TRUE FALSE 2161.935698 2109.478231 2088.321129 2062.289676 1982.959873 2219.878725 2222.609813 2294.655232 2848.097535 1960.641148 1.102667717 1.075912455 1.065121545 1.051844535 1.011383381 1.132220818 1.133613775 1.170359622 1.452635806 1 10.93710979 -8.013780159 1.79188845 1.234046043 1.066184396 0.243739121 0.1063707 0.446469384 2.803728401 0.063754548 0.031688334 9.69E-09 8.013780159 -0.167861646 NVSSFPDDAT(ph)SPLQENR ddPTM_K562_Paclitaxel_30min_R1 3 NVSSFPDDATSPLQENR 17 0 J3QLL0;J3KS65;P52292 J3QLL0 KPNA2 Importin subunit alpha-1 1 NVSSFPDDAT(0.998)S(0.002)PLQENR;NVSSFPDDAT(0.752)S(0.248)PLQENR;NVSSFPDDAT(0.5)S(0.5)PLQENR 322.43 9.49E-257 623132000 7044.3 6612 9327.7 8314.3 6244.9 6579.5 6562 8563.8 5551 9817.3 TRUE FALSE 7142.941934 7333.92052 6972.806771 7781.058011 7095.561107 7746.281944 7807.105244 7836.251736 6084.198353 7816.528871 0.913825312 0.938257971 0.892059236 0.99546207 0.907763692 0.991013028 0.998794397 1.002523226 0.778375984 1 12.93231237 -6.246166997 24.39464507 0.955078817 0.917068559 0.066510421 0.066067845 1839.244565 2937828.763 0.017556521 0.030254096 5.67E-07 6.246166997 -0.038010258 NVSSFPDDATS(ph)PLQENR ddPTM_K562_Paclitaxel_30min_R1 1 NVSSFPDDATSPLQENR 17 0 J3QLL0;J3KS65;P52292 J3QLL0 KPNA2 Importin subunit alpha-1 1 NVSSFPDDAT(0.049)S(0.951)PLQENR 130.95 2.93E-07 45300000 2119.1 2518.6 2656.9 2854.9 1910.2 1926.8 2135 2751.4 1655.2 2879.2 TRUE FALSE 2148.773938 2793.589265 1986.132735 2671.799492 2170.40158 2268.490926 2540.105105 2517.651396 1814.189356 2292.41746 0.937339719 1.218621527 0.866392256 1.165494304 0.946774145 0.98956275 1.108046483 1.098251711 0.791386991 1 11.16265407 -8.749427728 24.99003577 0.895693449 1.042878008 0.207682015 0.113735432 278.0815796 578552.0622 0.072045422 0.026767515 1.78E-09 8.749427728 0.147184559 NVYS(ph)SSRYDDYDR ddPTM_K562_Paclitaxel_30min_R1 2 NVYSSSRYDDYDR 13 1 O75494-6;O75494-3;Q5JRI1;O75494-5;O75494-4;O75494-2;O75494 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 NVYS(0.764)S(0.213)S(0.024)RYDDYDR;NVY(0.001)S(0.655)S(0.166)S(0.166)RY(0.013)DDYDR 179.79 0.00063356 255577000 7219 6551.4 8441.4 7273.4 5885.2 5729.1 5565.2 7357.8 8547.5 7979.8 TRUE FALSE 7320.088273 7266.704007 6310.264168 6806.916679 6686.863877 6745.075444 6621.167648 6732.708964 9368.525566 6353.51238 1.152132527 1.143730204 0.993193023 1.071362779 1.052467278 1.061629386 1.042127134 1.059682985 1.474542742 1 12.63333865 NVYSS(ph)SRYDDYDR ddPTM_K562_Paclitaxel_30min_R1 1 NVYSSSRYDDYDR 13 1 O75494-6;O75494-3;Q5JRI1;O75494-5;O75494-4;O75494-2;O75494 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 NVYS(0.274)S(0.711)S(0.015)RYDDYDR 192.54 0.00018898 78628000 1931.1 1488.1 1746.5 1780.1 1448.8 1489.5 1663.1 1805.6 2384.3 2134.2 TRUE FALSE 1958.141358 1650.57579 1305.574475 1665.932353 1646.151088 1753.641911 1978.664543 1652.20301 2613.322668 1699.248869 1.152357017 0.971356122 0.768324463 0.980393387 0.968752205 1.032010051 1.164434816 0.972313733 1.53792815 1 10.73068145 -7.824861165 1.248527272 1.203135103 0.955268883 0.244634803 0.166555217 0.636249104 1.9667988 0.109274554 0.059216017 1.50E-08 7.824861165 -0.247866219 NWEDEDFYDS(ph)DDDTFLDR ddPTM_K562_Paclitaxel_30min_R1 2 NWEDEDFYDSDDDTFLDR 18 0 A0A087WWF4;A0A087X0M4;Q9BWU0 A0A087WWF4 SLC4A1AP Kanadaptin 1 NWEDEDFY(0.022)DS(0.969)DDDT(0.009)FLDR;NWEDEDFY(0.004)DS(0.993)DDDT(0.004)FLDR 101.16 0.00077269 5697400 4093.5 4500.2 5408.9 4923.6 3992 3540.1 4332.6 5455 3646.5 5630.6 TRUE FALSE 4150.82163 4991.547055 4043.356299 4607.822333 4535.777985 4167.88703 5154.688232 4991.563701 3996.762618 4483.080629 0.925886008 1.113418978 0.901914695 1.027824997 1.01175472 0.929692632 1.149809396 1.113422692 0.891521467 1 12.13027473 -7.730625845 24.99991254 1.048140639 0.990290474 0.079229068 0.08608479 498.0824251 404108.2822 0.032040881 0.024816065 1.86E-08 7.730625845 -0.057850165 NWTEDMEGGISS(ph)PVKK ddPTM_K562_Paclitaxel_30min_R1 1 NWTEDMEGGISSPVKK 16 1 A0A286YEX4;P08651-4;P08651-5;P08651-3;P08651-6;P08651-2;P08651 A0A286YEX4 NFIC Nuclear factor 1 C-type 1 NWTEDMEGGIS(0.397)S(0.603)PVKK 84.581 0.010002 16198000 3192.1 2706.3 7131.8 3330.3 2327.8 2171.6 1983 3527.2 2403.9 5604.3 TRUE FALSE 3236.799248 3001.782986 5331.288885 3116.709464 2644.88577 2556.702769 2359.263898 3227.542344 2634.805336 4462.140584 0.725391589 0.672722638 1.194782814 0.698478545 0.592739229 0.572976741 0.528729172 0.723317046 0.590480126 1 12.12352025 -6.504004688 24.78567717 0.642771227 0.862056263 0.187252956 0.179567775 983.6121952 1291693.532 0.049620221 0.072203721 3.13E-07 6.504004688 0.219285036 NYGYNPS(ph)PVKPEGLR ddPTM_K562_Paclitaxel_30min_R1 3 NYGYNPSPVKPEGLR 15 1 E9PRF4;Q15047-3;Q15047 E9PRF4 SETDB1 Histone-lysine N-methyltransferase SETDB1 1 NYGYNPS(1)PVKPEGLR;NYGYNPS(1)PVKPEGLR;NYGYNPS(1)PVKPEGLR 102.03 0.0030563 94868000 5660.5 5075 10817.6 7304.1 4842.8 5177.2 4683.4 6901.6 4786.3 9247.3 TRUE FALSE 5739.764464 5629.105663 8086.56309 6835.647718 5502.471349 6095.303729 5572.050701 6315.266002 5246.045501 7362.695184 0.779573827 0.764544168 1.098315615 0.928416503 0.747344717 0.827863109 0.756794973 0.857738348 0.712517002 1 12.84601826 -6.749530447 24.98776449 0.807458539 0.898243587 0.092568567 0.113184924 491.0823177 1030402.75 0.033873238 0.043377713 1.78E-07 6.749530447 0.090785048 NYPS(ph)QEELIK ddPTM_K562_Paclitaxel_30min_R1 2 NYPSQEELIK 10 0 P38398-8;P38398-4;P38398;P38398-7;K7EPC7;H0Y8B8;B7ZA85;E7EUM2;A0A2R8Y7V5;P38398-6;P38398-5;P38398-3 P38398-8 BRCA1 Breast cancer type 1 susceptibility protein 1 NY(0.001)PS(0.999)QEELIK;NYPS(1)QEELIK 93.766 0.014336 15863200 2160.1 1608.35 3790.7 2397.16 1524.21 1584.71 1612.05 2305.1 1526.62 2902.7 TRUE FALSE 2190.348064 1783.955092 2833.690902 2243.416887 1731.833207 1865.736068 1917.928072 2109.267367 1673.258672 2311.128147 0.947739773 0.771897956 1.226107218 0.970702075 0.749345383 0.807283694 0.829866606 0.912657037 0.724000819 1 11.17438154 -6.681147873 8.449924867 0.8311399 0.982983404 0.232483829 0.126051091 0.395218108 37.08863581 0.037161154 0.047957792 2.08E-07 6.681147873 0.151843504 NYQQNYQNS(ph)ESGEK ddPTM_K562_Paclitaxel_30min_R1 2 NYQQNYQNSESGEK 14 0 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 NYQQNYQNS(1)ESGEK;NYQQNYQNS(0.99)ES(0.01)GEK 253.79 1.23E-72 11523900 3286.6 2929 5897.8 3732.3 2527.95 2992.5 2468.57 3264.5 2696.4 4953.6 TRUE FALSE 3332.62254 3248.798125 4408.827447 3492.926983 2872.299589 3523.177858 2936.968271 2987.160349 2955.401268 3944.053601 0.844973947 0.823720581 1.117841666 0.885618538 0.728260789 0.893288534 0.744657291 0.757383304 0.749330908 1 11.94546344 -6.534424143 22.30001118 0.801271288 0.932232399 0.19340244 0.107219197 85.49517853 165131.5746 0.031166932 0.040293538 2.92E-07 6.534424143 0.13096111 NYQQNYQNS(ph)ESGEKNEGSESAPEGQAQQR ddPTM_K562_Paclitaxel_30min_R1 8 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 NYQQNY(0.033)QNS(0.939)ES(0.028)GEKNEGSESAPEGQAQQR;NYQQNY(0.005)QNS(0.576)ES(0.41)GEKNEGS(0.007)ES(0.002)APEGQAQQR;NYQQNY(0.039)QNS(0.48)ES(0.48)GEKNEGS(0.001)ESAPEGQAQQR;NYQQNY(0.038)QNS(0.471)ES(0.471)GEKNEGS(0.015)ES(0.005)APEGQAQQR;NYQQNY(0.006)QNS(0.829)ES(0.162)GEKNEGS(0.003)ES(0.001)APEGQAQQR;NYQQNY(0.006)QNS(0.848)ES(0.143)GEKNEGS(0.002)ES(0.001)APEGQAQQR;NYQQNY(0.004)QNS(0.961)ES(0.034)GEKNEGS(0.001)ESAPEGQAQQR;NYQQNY(0.028)QNS(0.796)ES(0.176)GEKNEGSESAPEGQAQQR 124.51 7.42E-15 2635570400 5035.18 3551.38 8197.66 5115.553 3715.76 3540.147 2894.71 4657.837 4540.819 6263.69 TRUE FALSE 5105.688055 3939.131678 6128.059346 4787.464327 4221.90942 4167.942364 3443.966111 4262.124674 4976.984954 4987.14654 1.023769407 0.789856814 1.22877066 0.959960629 0.846558124 0.835736895 0.690568461 0.854621904 0.997962445 1 12.28399888 -6.666366284 4.779960882 0.853022044 1.006523951 0.193497905 0.12903562 0.324011516 12.58039451 0.039091234 0.050578875 2.16E-07 6.666366284 0.153501908 NYQQNYQNSES(ph)GEKNEGSESAPEGQAQQR ddPTM_K562_Paclitaxel_30min_R1 1 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 NYQQNY(0.024)QNS(0.098)ES(0.378)GEKNEGS(0.25)ES(0.25)APEGQAQQR 55.063 0.0040217 4305300 0 159.99 237.03 299.18 51.155 0 151.67 158.4 0 74.612 TRUE FALSE 0 177.4582493 177.188845 279.9919339 58.12317706 0 180.4485907 144.9429313 0 59.40603344 0 2.987209193 2.982674228 4.713190187 0.978405285 0 3.03754653 2.439868863 0 1 5.892537558 NYQQNYQNSESGEKNEGS(ph)ES(ph)APEGQAQQR ddPTM_K562_Paclitaxel_30min_R1 1 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 2 NYQQNYQNSESGEKNEGS(1)ES(1)APEGQAQQR 129.08 6.83E-22 0 2992.6 2064.7 4937 3280.5 2498.3 2032.3 1834.2 3079.9 2418.5 3703.6 TRUE FALSE 3034.505633 2290.130928 3690.59329 3070.103413 2838.610757 2392.69987 2182.229875 2818.243271 2650.807731 2948.804287 1.029063084 0.776630358 1.251555862 1.041135021 0.962631114 0.811413589 0.740038898 0.955724082 0.898943257 1 11.52591436 -7.036553394 4.779193034 0.870186555 1.021588384 0.221560536 0.126025942 0.311995097 17.15687645 0.042681584 0.044416872 9.19E-08 7.036553394 0.151401829 NYQQNYQNSESGEKNEGS(ph)ESAPEGQAQQR ddPTM_K562_Paclitaxel_30min_R1 1 NYQQNYQNSESGEKNEGSESAPEGQAQQR 29 1 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 NYQQNY(0.005)QNS(0.013)ES(0.034)GEKNEGS(0.666)ES(0.282)APEGQAQQR 60.51 0.001378 21553000 299.01 510.23 710.21 468.68 309.89 332.81 293.85 302.71 486.11 509.73 TRUE FALSE 303.1970625 565.9386369 530.9087017 438.6209625 352.1022645 391.8291806 349.6065035 276.992896 532.8030375 405.8467462 0.747072794 1.394463901 1.308150692 1.080755154 0.867574442 0.965460939 0.861424926 0.68250614 1.312818305 1 8.664791237 -6.572413512 5.163432047 0.930391418 1.177938823 0.145606166 0.217325188 0.299670723 17.6513411 0.063077263 0.083227205 2.68E-07 6.572413512 0.247547405 NYSEVIEVDES(ph)DVEEDIFPTTSK ddPTM_K562_Paclitaxel_30min_R1 1 NYSEVIEVDESDVEEDIFPTTSK 23 0 F8W7U8;P49959-2;P49959;P49959-3 F8W7U8 MRE11A Double-strand break repair protein MRE11A 1 NYSEVIEVDES(1)DVEEDIFPTTSK 107.32 5.95E-06 0 1540.9 1312.6 1844.9 1240.6 781.28 807.04 1067.4 1475 1385.9 1709.8 TRUE FALSE 1562.477354 1455.914107 1379.132178 1161.033469 887.7035632 950.1572126 1269.933578 1349.689543 1519.021887 1361.341821 1.147748001 1.069469904 1.013068251 0.85285962 0.652079844 0.697956382 0.932854304 0.991440593 1.115826946 1 10.41081365 -5.987150702 2.59901726 0.876151276 1.112652047 0.30186717 0.132378191 0.367779491 4.97149044 0.04213651 0.10016115 1.03E-06 5.987150702 0.236500771 NYSS(ph)PPPCHLSR ddPTM_K562_Paclitaxel_30min_R1 2 NYSSPPPCHLSR 12 0 Q12986-3;Q12986-2;Q12986 Q12986-3 NFX1 Transcriptional repressor NF-X1 1 NY(0.001)S(0.093)S(0.907)PPPCHLSR;NYS(0.078)S(0.922)PPPCHLSR 101.2 0.0068049 157214000 2884.1 2922.46 3377.7 3287.8 2840.45 2770.79 2626.17 3104.74 2940.4 3586.7 TRUE FALSE 2924.486298 3241.544066 2524.95786 3076.935224 3227.367379 3262.150703 3124.472048 2840.972958 3222.838558 2855.728571 1.024077123 1.135102299 0.884172917 1.077460671 1.130138001 1.142318194 1.0941068 0.994832978 1.128552129 1 11.47964315 -6.490894293 24.98597626 1.086759174 1.018899414 0.143465357 0.073775263 1258.663619 983256.959 0.020678308 0.030634624 3.23E-07 6.490894293 -0.067859761 NYTNS(ph)PEESSKALGKNK ddPTM_K562_Paclitaxel_30min_R1 1 NYTNSPEESSKALGKNK 17 2 J3QQU0;A0A3B3ITH3;Q9P2X3-2;Q9P2X3 J3QQU0 IMPACT Protein IMPACT 1 NY(0.09)T(0.1)NS(0.804)PEES(0.005)S(0.001)KALGKNK 52.823 0.02719 85666000 2996.6 2618.4 2452.1 2917.7 2732 2785.8 2953.8 3646.3 3709.1 3489.4 TRUE FALSE 3038.561645 2904.285767 1833.037028 2730.571781 3104.144653 3279.822515 3514.26813 3336.524056 4065.375628 2778.258365 1.093692971 1.045362017 0.659779181 0.9828358 1.11729877 1.18053186 1.264917682 1.200940884 1.463282062 1 11.43996505 -6.959844484 2.134512171 1.239372165 0.929742218 0.428803281 0.15052743 0.293267094 2.705086205 0.054469552 0.061270666 1.10E-07 6.959844484 -0.309629947 PAFSKDDILPMDLGT(ph)FY(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 PAFSKDDILPMDLGTFYR 18 1 O75143-4;O75143-2;O75143;O75143-5 O75143-4 ATG13 Autophagy-related protein 13 2 PAFSKDDILPMDLGT(1)FY(1)R;PAFSKDDILPMDLGT(1)FY(1)R 58.159 0.018877 31441000 2399.68 2524 2139.53 2667.73 3025.2 3160.6 2204.4 2491.2 3232.7 1645.14 TRUE FALSE 2433.282924 2799.578856 1599.37919 2496.633738 3437.283457 3721.088033 2622.673392 2279.55701 3543.215279 1309.859565 1.857667027 2.137312221 1.221031042 1.906031612 2.624161818 2.84082976 2.002255404 1.74030642 2.705034474 1 10.35519643 -11.71990111 8.56745038 0.9955981 2.105171106 0.337170122 0.468801713 0.041836992 0.00136779 0.48172195 0.117249806 1.91E-12 11.71990111 1.109573006 PARRRTPSPDY(ph)DFYY(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 PARRRTPSPDYDFYYR 16 3 A0A0A0MRA3;A0A0A0MTS7;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13;Q8WZ42-12 A0A0A0MRA3 TTN Titin 2 PARRRT(0.024)PS(0.02)PDY(0.532)DFY(0.532)Y(0.892)R 43.69 0.030639 29593000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 PCSEETPAIS(ph)PSKR ddPTM_K562_Paclitaxel_30min_R1 1 PCSEETPAISPSKR 14 1 P33316-2;H0YNJ9 P33316-2 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 PCSEETPAIS(0.63)PS(0.37)KR 103.39 0.0032329 709180000 1865 1435.7 4134.5 1710.3 1211.7 1534.3 1237.8 2008.8 1858.6 2392.7 TRUE FALSE 1891.115754 1592.454581 3090.69434 1600.609013 1376.754054 1806.386562 1472.666088 1838.139901 2037.126834 1905.066427 0.992677068 0.835905016 1.622355156 0.840185408 0.722680341 0.948201353 0.77302611 0.964869191 1.069320632 1 10.89562559 PCSEETPAISPS(ph)KR ddPTM_K562_Paclitaxel_30min_R1 4 PCSEETPAISPSKR 14 1 P33316-2;H0YNJ9 P33316-2 DUT "Deoxyuridine 5-triphosphate nucleotidohydrolase, mitochondrial" 1 PCSEETPAIS(0.003)PS(0.997)KR;PCSEETPAIS(0.055)PS(0.945)KR;PCSEETPAIS(0.053)PS(0.947)KR;PCSEETPAIS(0.049)PS(0.951)KR 102.36 0.003543 2077745200 5961.69 5007.54 12263.3 6546.29 4564.97 3589.36 4039.94 6809.84 6140.26 8336.6 TRUE FALSE 6045.172053 5554.280152 9167.278244 6126.44026 5186.7962 4225.882599 4806.497525 6231.301586 6730.059408 6637.596344 0.910747165 0.83679089 1.381114152 0.922990785 0.78142688 0.63665857 0.724132242 0.938788872 1.013930203 1 12.69644518 -6.518042453 24.84892596 0.831309409 1.043904358 0.196424722 0.173078057 297.2545168 1527301.71 0.053216679 0.070657494 3.03E-07 6.518042453 0.212594949 PDT(ph)GFQT(ph)T(ph)IKR ddPTM_K562_Paclitaxel_30min_R1 2 PDTGFQTTIKR 11 1 A4D263 A4D263 C7orf72 Uncharacterized protein C7orf72 3 PDT(1)GFQT(1)T(1)IKR;PDT(1)GFQT(1)T(1)IKR 71.241 0.019125 87358000 171.25 153.33 208.15 102.17 112.35 0 151.99 168.93 63.099 172.16 TRUE FALSE 173.6480284 170.0710879 155.5999581 95.6172735 127.6539721 0 180.8293091 154.5783421 69.15994088 137.0736975 1.266822385 1.240727368 1.135155475 0.697561058 0.931279847 0 1.31921231 1.127702432 0.504545672 1 7.098807955 -6.123683716 4.030549102 0.797178775 1.242401443 0.240586574 0.342745435 0.348523256 9.627276289 0.09619914 0.177528389 7.52E-07 6.123683716 0.445222667 PDY(ph)FAVGY(ph)Y(ph)GQGFPS(ph)FLR ddPTM_K562_Paclitaxel_30min_R1 2 PDYFAVGYYGQGFPSFLR 18 0 Q92608 Q92608 DOCK2 Dedicator of cytokinesis protein 2 4 PDY(1)FAVGY(1)Y(1)GQGFPS(1)FLR;PDY(1)FAVGY(1)Y(1)GQGFPS(1)FLR 45.135 0.02617 74559000 0 60.491 62.094 0 63.511 132.31 0 0 0 172.6 TRUE FALSE 0 67.09561195 46.41760173 0 72.16227345 155.7733208 0 0 0 137.4240253 0 0.48823786 0.33776919 0 0.525106679 1.133523199 0 0 0 1 7.102490436 -5.246804145 22.67061402 0.357822174 5.35E-06 0.074853042 0.396439882 2199.400927 3406751.859 0.100983235 1.904341599 5.66E-06 5.246804145 -0.357816821 PEENLILDAQAT(ph)SR ddPTM_K562_Paclitaxel_30min_R1 1 PEENLILDAQATSR 14 0 P98095;P98095-2 P98095 FBLN2 Fibulin-2 1 PEENLILDAQAT(0.676)S(0.324)R 101.45 0.015318 99824000 953.14 1092.3 1261.5 948.33 1000.2 715.14 642.09 915.4 1061.2 980.31 TRUE FALSE 966.4869007 1211.561008 943.018723 887.5083584 1136.444174 841.9600379 763.9232256 837.6310563 1163.133002 780.5222839 1.23825664 1.552243969 1.208189366 1.137069853 1.456004777 1.078713645 0.978733396 1.073167382 1.490198327 1 9.608296011 -7.28125058 24.73328758 1.119646177 1.315155398 0.238550082 0.173330736 1119.745205 1397940.851 0.061821173 0.054594403 5.23E-08 7.28125058 0.195509221 PEGAAVAAT(ph)PT(ph)LPRVEERR ddPTM_K562_Paclitaxel_30min_R1 1 PEGAAVAATPTLPRVEERR 19 2 A0A087X1K6;Q9Y2Y9 A0A087X1K6 KLF13 Krueppel-like factor 13 2 PEGAAVAAT(1)PT(1)LPRVEERR 55.589 0.030674 0 390.91 363.05 381.03 364.95 326.26 321.39 330.01 403.26 217.72 492.64 TRUE FALSE 396.3839461 402.6890268 284.834264 341.5437405 370.7021356 378.384004 392.6276747 369.0005459 238.6329788 392.2396976 1.010565602 1.026640162 0.726173984 0.87075261 0.945090815 0.964675443 1.000989133 0.940752678 0.608385587 1 8.615591744 PELPDGGDDDDIIADISNRK ddPTM_K562_Paclitaxel_30min_R1 1 PELPDGGDDDDIIADISNRK 20 1 E5RHN8;E5RHX6;Q9Y6U3-2;Q9Y6U3 E5RHN8 SCIN Adseverin 0 36.816 0.0299 47466000 0 0 0 0 0 0 0 0 0 0 FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 PEMLS(ph)EQEHMSIS(ph)GS(ph)SAR ddPTM_K562_Paclitaxel_30min_R1 1 PEMLSEQEHMSISGSSAR 18 0 A0A0J9YYL3;A0A0J9YXJ8;A0A0J9YVP6;A0A0J9YXX5;Q9UHX1-4;Q9UHX1-6;Q9UHX1-3;Q9UHX1-5;Q9UHX1-2;Q9UHX1 A0A0J9YYL3 PUF60 Poly(U)-binding-splicing factor PUF60 3 PEMLS(1)EQEHMS(0.018)IS(0.949)GS(0.517)S(0.517)AR 54.237 0.022972 9005900 147.49 202.93 256 0 136.49 152.17 60.423 0 236.02 117.91 TRUE FALSE 149.555315 225.0865837 191.3696338 0 155.0822488 179.1552129 71.88794882 0 258.6907756 93.87987728 1.59304975 2.397602023 2.038452109 0 1.651922151 1.908345197 0.765743958 0 2.755550849 1 6.552744051 -6.073910678 24.99954784 1.138812402 2.051044705 0.189238239 0.809407391 203.6359796 68876.84773 0.215109472 0.37258075 8.44E-07 6.073910678 0.912232303 PEPVIT(ph)WRHLTPT(ph)GR ddPTM_K562_Paclitaxel_30min_R1 1 PEPVITWRHLTPTGR 15 1 F5H5G1;H3BLU2;Q13449 F5H5G1 LSAMP Limbic system-associated membrane protein 2 PEPVIT(1)WRHLT(0.002)PT(0.998)GR 80.411 0.019985 1779500000 3255.1 3434.3 3559 3724.5 3693.6 3351.6 3034.2 3686.6 3222 3912.7 TRUE FALSE 3300.681443 3809.268488 2660.486433 3485.62724 4196.730853 3945.959201 3609.92361 3373.400319 3531.487496 3115.289592 1.05951031 1.222765453 0.854009348 1.118877439 1.347139882 1.266642822 1.158776256 1.082852884 1.133598464 1 11.60515056 -4.9448278 13.29724324 1.137194705 0.63900719 0.025106585 0.130743923 809415.2711 6211349.271 0.034381033 10090136.15 1.14E-05 4.9448278 -0.498187515 PERFT(ph)LY(ph)SS(ph)K ddPTM_K562_Paclitaxel_30min_R1 2 PERFTLYSSK 10 1 O94921-3;O94921-2;O94921;E7EUK8 O94921-3 CDK14 Cyclin-dependent kinase 14 3 PERFT(0.99)LY(0.98)S(0.032)S(0.998)K;PERFT(0.996)LY(0.994)S(0.013)S(0.996)K 118.76 0.0024798 117654000 5653.7 5309.3 5328.4 5904.6 5171.2 5271.2 4824.2 6524.9 5239.4 6231.6 TRUE FALSE 5732.869243 5888.987329 3983.179519 5525.905384 5875.604989 6205.973309 5739.566766 5970.569018 5742.66778 4961.596499 1.155448502 1.186913795 0.802801985 1.113735344 1.18421661 1.250801694 1.156798375 1.203356423 1.157423378 1 12.2765887 -6.519706773 24.65508988 1.171213567 1.044912016 0.154648485 0.113246921 173.9545358 1352119.628 0.033383961 0.043990459 3.02E-07 6.519706773 -0.126301551 PESGS(ph)T(ph)ISKC ddPTM_K562_Paclitaxel_30min_R1 1 PESGSTISKC 10 1 A0A0D9SFY9 A0A0D9SFY9 MAGI2 2 PESGS(0.997)T(0.907)IS(0.095)KC 84.507 0.024008 18956000 67.219 0 142.25 0 189.93 0 76.721 0 0 139.2 TRUE FALSE 68.16027339 0 106.3372282 0 215.8016815 0 91.27840924 0 0 110.8309636 0.61499306 0 0.959454152 0 1.947124473 0 0.823582204 0 0 1 6.792217183 -5.750220288 24.98657109 0.570042507 0.307496882 0.032019816 0.61530842 984.8610858 2193389.93 0.151988574 0.394277193 1.78E-06 5.750220288 -0.262545625 PFTTVWNANTQWCLER ddPTM_K562_Paclitaxel_30min_R1 1 PFTTVWNANTQWCLER 16 0 C9JB49;C9JRK1;Q12794-4;Q12794-7;Q12794-2;Q12794 C9JB49 HYAL1 Hyaluronidase;Hyaluronidase-1 0 88.224 0.025605 6027300 53.071 0 186.11 144.75 126.08 0 122.15 249.51 134.51 144.63 FALSE TRUE 53.81415774 0 139.1242287 135.4663829 143.2542306 0 145.3273248 228.3125681 147.4302865 115.1543266 0.467322065 0 1.208154594 1.176389866 1.244019524 0 1.262022271 1.982666 1.280284387 1 6.847424807 -5.768094946 24.99024439 1.147346793 0.233660966 0.37723241 0.467950739 152.8428631 573900.3565 0.131926815 0.285068996 1.71E-06 5.768094946 -0.913685827 PGNTFAS(ph)EGS(ph)LNT(ph)AGR ddPTM_K562_Paclitaxel_30min_R1 1 PGNTFASEGSLNTAGR 16 0 F8W1Y1;B3KR83;F2Z3D9 F8W1Y1 WBSCR22 3 PGNT(0.05)FAS(0.975)EGS(0.975)LNT(1)AGR 91.518 0.011225 0 1222.9 1416.8 1928.5 1665.3 1508.3 1456.4 1290.4 1635.5 1197 1941.6 TRUE FALSE 1240.024373 1571.491015 1441.626324 1558.495112 1713.755996 1714.672091 1535.246664 1496.554067 1311.977198 1545.900854 0.802137064 1.016553559 0.932547724 1.008146873 1.108580794 1.10917339 0.993108102 0.968078944 0.848681333 1 10.59423208 -5.258929048 24.6427397 1.002320252 0.802136977 0.395689149 0.072581865 211.643593 2077451.657 0.019597154 0.128758626 5.51E-06 5.258929048 -0.200183276 PGPTPSGTNVGS(ph)SGRSPSK ddPTM_K562_Paclitaxel_30min_R1 1 PGPTPSGTNVGSSGRSPSK 19 1 P60468 P60468 SEC61B Protein transport protein Sec61 subunit beta 1 PGPTPSGT(0.009)NVGS(0.523)S(0.353)GRS(0.112)PS(0.002)K 64.298 0.020593 7304500 736 688.77 1686.1 983.9 782.29 512.12 613.8 942.74 587.42 1243.7 TRUE FALSE 746.3062708 763.9722379 1260.423202 920.7970578 888.8511423 602.9372915 730.2653457 862.6483526 643.8443157 990.2332573 0.753667144 0.771507352 1.272854847 0.929878946 0.897617946 0.608884106 0.737468006 0.871156716 0.650194599 1 9.951624593 -7.024290003 20.36667831 0.762124041 0.940974251 0.170544077 0.167081571 121.8698361 102185.1546 0.055991561 0.05648034 9.46E-08 7.024290003 0.17885021 PGPTPSGTNVGSSGRS(ph)PSK ddPTM_K562_Paclitaxel_30min_R1 4 PGPTPSGTNVGSSGRSPSK 19 1 P60468 P60468 SEC61B Protein transport protein Sec61 subunit beta 1 PGPTPSGTNVGS(0.007)S(0.05)GRS(0.923)PS(0.019)K;PGPTPS(0.002)GT(0.001)NVGS(0.014)S(0.024)GRS(0.953)PS(0.005)K;PGPTPSGTNVGSS(0.017)GRS(0.979)PS(0.003)K;PGPTPSGTNVGS(0.001)S(0.016)GRS(0.931)PS(0.051)K 98.572 0.00065806 494675000 8278.3 6740.5 18667.3 9554.4 7152.7 6399.8 5553.74 9790.7 6034.7 13027.9 TRUE FALSE 8394.221741 7476.450585 13954.50924 8941.623548 8127.018836 7534.714672 6607.533173 8958.918923 6614.359899 10372.80683 0.809252681 0.720774108 1.345297321 0.862025457 0.783492739 0.726391111 0.637005324 0.863692834 0.637663461 1 13.34051871 -6.605748499 4.766580226 0.760237529 0.959098722 0.164880762 0.181706165 0.3463787 14.09522951 0.054600218 0.071557394 2.48E-07 6.605748499 0.198861193 PGPTPSGTNVGSSGRS(ph)PSKAVAAR ddPTM_K562_Paclitaxel_30min_R1 1 PGPTPSGTNVGSSGRSPSKAVAAR 24 2 P60468 P60468 SEC61B Protein transport protein Sec61 subunit beta 1 PGPTPSGT(0.001)NVGS(0.013)S(0.013)GRS(0.924)PS(0.05)KAVAAR 66.889 0.0015352 274910000 2442 1943.8 4634.1 2839.7 1974.9 1456.8 1386.6 2661.8 3947.8 3181 TRUE FALSE 2476.195534 2156.030658 3464.164141 2657.574352 2243.914815 1715.143026 1649.700111 2435.663476 4327.003829 2532.710454 0.977685993 0.851274039 1.367769512 1.049300503 0.885973686 0.677196646 0.651357564 0.961682561 1.708447889 1 11.30646644 -11.35151989 4.159082375 1.000009653 0.995194697 0 0.300647349 2.80E-05 4.36E-06 0.302504372 0.073220999 4.45E-12 11.35151989 -0.004814957 PGVS(ph)KDGLLSPGAWNGEPSGEGSR ddPTM_K562_Paclitaxel_30min_R1 1 PGVSKDGLLSPGAWNGEPSGEGSR 24 1 Q9BR39 Q9BR39 JPH2 Junctophilin-2 1 PGVS(0.868)KDGLLS(0.132)PGAWNGEPSGEGSR 61.732 0.0059458 17631000 2289.1 2221.4 3775.2 2683.3 2041.7 2096.5 2099.5 2561.5 2078.9 2957.3 TRUE FALSE 2321.154462 2463.939964 2822.104069 2511.205148 2319.814106 2468.284839 2497.869165 2343.884587 2278.587634 2354.600637 0.985795394 1.046436464 1.198548928 1.06651001 0.985226144 1.048281734 1.060846211 0.995448888 0.967717242 1 11.20126667 -7.97314509 0.816319333 0.981448442 1.069396854 0.212096453 0.056787298 1.047550308 1.310822652 0.05300681 0.027375974 1.06E-08 7.97314509 0.087948411 PIRPGQHPAAS(ph)PTHPSAIR ddPTM_K562_Paclitaxel_30min_R1 1 PIRPGQHPAASPTHPSAIR 19 1 P33176 P33176 KIF5B Kinesin-1 heavy chain 1 PIRPGQHPAAS(0.557)PT(0.438)HPS(0.005)AIR 55.33 0.030828 13142000 1219.9 1142.5 1980.5 1671.7 1201.3 1038.3 1013.2 1425.6 1003 2019.9 TRUE FALSE 1236.982364 1267.242014 1480.49828 1564.484644 1364.937398 1222.427927 1205.449411 1304.486382 1099.342632 1608.243271 0.769151276 0.787966619 0.920568615 0.97279104 0.848713265 0.760101378 0.749544197 0.811125036 0.683567375 1 10.65126994 -7.138031807 5.746482629 0.786251423 0.866943974 0.079040775 0.094256615 0.484043524 20.76030878 0.031325045 0.031405503 7.28E-08 7.138031807 0.08069255 PIRPGQHPAASPT(ph)HPSAIR ddPTM_K562_Paclitaxel_30min_R1 1 PIRPGQHPAASPTHPSAIR 19 1 P33176 P33176 KIF5B Kinesin-1 heavy chain 1 PIRPGQHPAAS(0.386)PT(0.614)HPSAIR 89.816 0.0020899 17261000 1917 1846.8 2973.8 2386.9 1791.6 1566.7 1500.2 2243.2 1211.2 2705.1 TRUE FALSE 1943.843914 2048.439869 2223.027411 2233.814917 2035.646252 1844.532247 1784.855118 2052.626158 1327.541172 2153.799135 0.902518662 0.95108213 1.032142401 1.037150996 0.945142107 0.856408668 0.828700824 0.953025807 0.616371857 1 11.07266799 -7.192377504 3.369562496 0.845282423 0.982926265 0.274591892 0.100654663 0.322407003 7.211945787 0.034144875 0.033387749 6.42E-08 7.192377504 0.137643842 PIT(ph)NYILEKRET(ph)MS(ph)KR ddPTM_K562_Paclitaxel_30min_R1 1 PITNYILEKRETMSKR 16 3 A0A0A0MRA3;A0A0A0MTS7;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13;Q8WZ42-12 A0A0A0MRA3 TTN Titin 3 PIT(0.772)NY(0.228)ILEKRET(1)MS(1)KR 50.884 0.026299 9431500 713.42 608.31 625.86 776.81 864.29 810.65 989.74 826.09 1193.1 848.12 TRUE FALSE 723.4100811 674.727343 467.8539025 726.9888835 982.0209306 954.4073954 1177.537998 755.9084982 1307.702586 675.2726785 1.071285873 0.999192422 0.692837008 1.076585662 1.454258349 1.413365927 1.7437963 1.119412235 1.936554858 1 9.399326377 -6.676894052 3.67896423 1.466617192 0.922861577 0.443841296 0.268732225 0.196068592 5.164867359 0.077324741 0.100295262 2.10E-07 6.676894052 -0.543755615 PIVNMDY(ph)VVGART(ph)FRR ddPTM_K562_Paclitaxel_30min_R1 1 PIVNMDYVVGARTFRR 16 2 O14746-4;O14746-2;O14746-3;O14746 O14746-4 TERT Telomerase reverse transcriptase 2 PIVNMDY(1)VVGART(1)FRR 62.165 0.028148 0 897.69 903.06 681.71 906.19 806.39 861.17 442.64 1011.8 640.33 881.89 TRUE FALSE 910.2604296 1001.659145 509.6038792 848.0710294 916.2339703 1013.886408 526.6286293 925.8412745 701.8365576 702.1603339 1.296371193 1.426539063 0.72576569 1.207802532 1.304878567 1.44395284 0.750011933 1.318561061 0.999538885 1 9.455656688 -7.049267295 0.025233644 2.77E-06 2.326997985 0.075600864 0.240379788 1382.750868 11.9696548 506.9173642 594.8044645 8.93E-08 7.049267295 2.326995217 PLARPLCPAGLLTPHLS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 PLARPLCPAGLLTPHLSR 18 1 J3KPA5 J3KPA5 SLC6A9 Transporter 1 PLARPLCPAGLLT(0.003)PHLS(0.997)R 93.106 0.0055928 427820000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 PLQVEPPEPVVAVALGAS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 PLQVEPPEPVVAVALGASR 19 0 A0A087WWC0;A0A087X1F1;A0A087X1M5;A0A087X0U8;A0A087WXC9;Q13477-2;Q13477-3;Q13477 A0A087WWC0 MADCAM1 Mucosal addressin cell adhesion molecule 1 1 PLQVEPPEPVVAVALGAS(1)R 72.583 0.014296 16331000 511.47 634.75 636.15 649.3 517.47 504.21 517.9 805.08 453.58 1084.7 TRUE FALSE 518.632158 704.0541516 475.5460647 607.6568042 587.9581748 593.624564 616.1688214 736.6834288 497.1483856 863.6375446 0.600520625 0.815219482 0.550631532 0.703601653 0.680792745 0.687353818 0.71345766 0.853000699 0.575644712 1 9.754282152 -15 0.261146352 2.990971201 0.668434051 0.50720666 0.09202019 155.4443199 1.527781337 166.1373378 0.114461229 1.00E-15 15 -2.322537149 PLSS(ph)Y(ph)GMDSR ddPTM_K562_Paclitaxel_30min_R1 1 PLSSYGMDSR 10 0 H3BRW9;Q02750-2;Q02750 H3BRW9 MAP2K1 Dual specificity mitogen-activated protein kinase kinase 1 2 PLS(0.008)S(0.994)Y(0.998)GMDSR 79.07 0.026962 8154500 2443.5 1946.6 3487.3 2769.5 2219.8 2056.4 1604.4 2102.1 2741.2 1742.9 TRUE FALSE 2477.716539 2159.136371 2606.887985 2591.876666 2522.174342 2421.073667 1908.826524 1923.513484 3004.504508 1387.696023 1.785489399 1.555914505 1.878572786 1.867755346 1.817526533 1.744671474 1.375536495 1.386120196 2.165102773 1 10.43847586 -7.651077874 7.096676156 1.514842149 1.778668629 0.203657068 0.281645475 0.408168554 24.01566739 0.104801779 0.080788376 2.23E-08 7.651077874 0.263826481 PMGKVVT(ph)Y(ph)GMANLLTGPK ddPTM_K562_Paclitaxel_30min_R1 1 PMGKVVTYGMANLLTGPK 18 1 K7ESA3;Q99536-2;Q99536-3;Q99536 K7ESA3 VAT1 Synaptic vesicle membrane protein VAT-1 homolog 2 PMGKVVT(0.999)Y(0.997)GMANLLT(0.004)GPK 61.862 0.015412 16328000 1505 1428.2 3484.9 1772.5 1235.2 1058.6 1353.3 1975.5 1602.6 2537.4 TRUE FALSE 1526.074643 1584.135706 2605.093894 1658.819783 1403.455152 1246.327847 1610.08161 1807.668944 1756.536891 2020.276487 0.755379104 0.784118271 1.289473946 0.821085527 0.694684693 0.616909544 0.79696102 0.894763145 0.869453712 1 10.98033703 -6.496691223 24.9852384 0.792850864 0.948465957 0.10534475 0.167437408 1479.301871 1411386.525 0.049066199 0.072492523 3.19E-07 6.496691223 0.155615093 PMMVPT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 PMMVPTR 7 0 P09234;A0A0A0MRR7;Q5TAL2 P09234 SNRPC U1 small nuclear ribonucleoprotein C 1 PMMVPT(1)R 42.19 0.030911 8073000 221.05 0 218.72 200.1 185.64 184.25 134.8 174.58 167.95 156.77 TRUE FALSE 224.145382 0 163.5014309 187.2664816 210.9273109 216.9241505 160.3775963 159.7483393 184.0823479 124.8201879 1.795746231 0 1.309895728 1.500290015 1.68984933 1.737893157 1.28486905 1.279827742 1.474780249 1 6.963707479 -5.97889529 24.99694514 1.450198399 0.83714163 0.171400285 0.44967563 312.0726708 369622.356 0.109667139 0.22825892 1.05E-06 5.97889529 -0.613056768 PMS(ph)MYET(ph)GS(ph)GQK ddPTM_K562_Paclitaxel_30min_R1 2 PMSMYETGSGQK 12 0 R4GNG3;F8WAK2;F8VXI9;Q14161-9;Q14161-10;Q14161-8;Q14161-4;Q14161-5;Q14161-3;Q14161 R4GNG3 GIT2 ARF GTPase-activating protein GIT2 3 PMS(0.999)MY(0.074)ET(0.975)GS(0.953)GQK;PMS(0.998)MY(0.021)ET(0.993)GS(0.989)GQK 105.03 0.004338 186222000 73.269 263.63 377.98 184.404 182.08 180.92 0 126.176 61.471 356.02 TRUE FALSE 74.29499205 292.4140149 282.5542742 172.5771528 206.8823786 213.0036218 0 115.4565612 67.37556421 283.4629286 0.262097737 1.031577626 0.996794451 0.608817363 0.729839276 0.751433787 0 0.407307445 0.237687392 1 8.147016261 -7.702991537 24.49844772 0.361857566 0.75039724 0.195396451 0.308922256 83.82158623 35133.29329 0.112896494 0.087449507 1.98E-08 7.702991537 0.388539675 PMVSRGWSR ddPTM_K562_Paclitaxel_30min_R1 1 PMVSRGWSR 9 1 A0A499FIV3 A0A499FIV3 0 62.582 0.025625 0 307.61 304.08 466.03 421.55 341.66 226.49 301.62 276.57 297.76 301.43 FALSE TRUE 311.9174891 337.2804827 348.3749627 394.5136698 388.1998764 266.6548214 358.8508204 253.0736522 326.3611784 239.9984005 1.299664866 1.405344711 1.451572019 1.643817913 1.617510265 1.111069161 1.495221717 1.054480578 1.359847306 1 7.906880981 -8.487513619 0.67790258 1.039414791 1.467769847 0.385993886 0.16834004 0.704873381 0.679493939 0.161560488 0.075287986 3.25E-09 8.487513619 0.428355055 PPGLQRS(ph)KS(ph)DLS(ph)ER ddPTM_K562_Paclitaxel_30min_R1 1 PPGLQRSKSDLSER 14 2 V9GZ26;Q9BQ89 V9GZ26 FAM110A Protein FAM110A 3 PPGLQRS(1)KS(1)DLS(1)ER 72.662 0.0238 0 2582 2260.5 4167.4 2859.8 2352.7 1774.8 1818.3 2548.4 2401.1 3227.1 TRUE FALSE 2618.155966 2507.309035 3115.288328 2676.385228 2673.177572 2089.535861 2163.312933 2331.897513 2631.736383 2569.415249 1.018969576 0.975828658 1.212450315 1.041632033 1.040383633 0.813234008 0.841947573 0.907559615 1.024254988 1 11.32722435 -7.116313103 6.522398442 0.907281536 1.063679908 0.420112857 0.0823367 0.236289913 11.87096064 0.028264101 0.028340293 7.65E-08 7.116313103 0.156398372 PPS(ph)VDSIIRSFIHESS(ph)MSRAQS(ph)PPVPAR ddPTM_K562_Paclitaxel_30min_R1 1 PPSVDSIIRSFIHESSMSRAQSPPVPAR 28 2 Q1MSJ5-1;Q1MSJ5;Q1MSJ5-2 Q1MSJ5-1 CSPP1 Centrosome and spindle pole-associated protein 1 3 PPS(0.333)VDS(0.333)IIRS(0.333)FIHES(0.152)S(0.698)MS(0.151)RAQS(0.999)PPVPAR 47.745 0.015774 11590000 403.83 635.18 564.84 550.25 802.91 658.28 694.77 645.78 802.32 688.76 TRUE FALSE 409.4848659 704.5311004 422.2391561 514.9594278 912.2799354 775.0167153 826.5989806 590.9169582 879.3864209 548.3903339 0.746703289 1.284725599 0.769960975 0.939038119 1.663559474 1.413257432 1.507318655 1.077548092 1.603577537 1 9.099059332 -6.737374685 24.98926853 1.38969537 0.948283344 0.450918818 0.238777782 207.8820701 215868.0272 0.067028997 0.086488458 1.83E-07 6.737374685 -0.441412026 PPSRT(ph)S(ph)MSLMRTT(ph)S(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 PPSRTSMSLMRTTSR 15 2 A0A087WTN8 A0A087WTN8 ANKRD11 4 PPS(0.111)RT(0.531)S(0.832)MS(0.354)LMRT(0.261)T(0.935)S(0.975)R 55.589 0.028797 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 PQPGEGPGGPGGPPEVS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 PQPGEGPGGPGGPPEVSR 18 0 M0R0J1;Q9H4M7-2;Q9H4M7 M0R0J1 PLEKHA4 Pleckstrin homology domain-containing family A member 4 1 PQPGEGPGGPGGPPEVS(1)R 78.244 0.012516 63198000 1776.6 1681.8 1605.8 1778 1820.9 1530.9 1628.7 1923 1557.3 1866.1 TRUE FALSE 1801.477881 1865.424611 1200.39593 1663.967038 2068.937408 1802.38362 1937.737323 1759.629147 1706.885623 1485.787796 1.212473199 1.255512138 0.807918825 1.119922403 1.392485127 1.2130828 1.304181747 1.184307175 1.148808483 1 10.53701237 -3.932114918 1.975607615 1.167298129 8.825958641 0.009192573 0.154611578 1646.949379 59.6078425 0.04357642 55853.09577 0.000116919 3.932114918 7.658660512 PRAS(ph)PPPQGPLPGPPGALHR ddPTM_K562_Paclitaxel_30min_R1 2 PRASPPPQGPLPGPPGALHR 20 1 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 PRAS(1)PPPQGPLPGPPGALHR;PRAS(1)PPPQGPLPGPPGALHR 100.69 0.00046828 23498200 3047.6 2861.5 5028 3656.5 2525.9 2535.25 2426.5 3319.9 2663.5 4084.8 TRUE FALSE 3090.275803 3173.928247 3758.619214 3421.988456 2869.970344 2984.840991 2886.915708 3037.853773 2919.341076 3252.315518 0.950177123 0.975898012 1.15567484 1.052169889 0.882439089 0.91775874 0.887649335 0.934058752 0.897619268 1 11.66725151 -6.756214331 24.99991357 0.914902115 1.038095195 0.465025102 0.05944174 114.2441217 546612.2254 0.018455107 0.023111999 1.75E-07 6.756214331 0.12319308 PRCPAGAMDEGPVDLRT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 PRCPAGAMDEGPVDLRTR 18 2 P20749 P20749 BCL3 B-cell lymphoma 3 protein 1 PRCPAGAMDEGPVDLRT(1)R 64.476 0.024343 6468900 826.71 958.93 977.33 1216.1 1051.9 1108.7 1125.2 887.86 643.2 1256.8 TRUE FALSE 838.2864906 1063.62922 730.590954 1138.104789 1195.186589 1305.312378 1338.700826 812.4307512 704.9822339 1000.66347 0.837730681 1.062924002 0.73010655 1.137350191 1.194394144 1.304446917 1.337813227 0.811892085 0.704514809 1 9.966741152 -6.286056309 24.6575688 1.088324195 0.895520722 0.153666567 0.203189355 1298.616784 1300757.329 0.062989623 0.093479086 5.18E-07 6.286056309 -0.192803474 PS(ph)EPVGTGNS(ph)APTQTS(ph)YQRRDTPTLR ddPTM_K562_Paclitaxel_30min_R1 1 PSEPVGTGNSAPTQTSYQRRDTPTLR 26 2 Q9UPZ9 Q9UPZ9 ICK Serine/threonine-protein kinase ICK 3 PS(0.883)EPVGT(0.209)GNS(0.789)APT(0.101)QT(0.026)S(0.322)Y(0.303)QRRDT(0.322)PT(0.045)LR 42.041 0.029901 18738000 413.31 371.01 618.92 333.35 401.81 363.51 409.55 363.6 280.99 431.6 TRUE FALSE 419.0976152 411.5181265 462.6659913 311.970423 456.5433247 427.9733946 487.2599745 332.7099105 307.980345 343.6396831 1.219584454 1.197527954 1.346369509 0.907841668 1.328552397 1.245413192 1.41793861 0.968194091 0.896230442 1 8.424752837 -8.376711056 7.676162082 0.943888497 1.231060739 0.497759931 0.13008916 0.234026416 14.09976316 0.071172508 0.033896366 4.20E-09 8.376711056 0.287172242 PS(ph)PLMTNNNVVK ddPTM_K562_Paclitaxel_30min_R1 1 PSPLMTNNNVVK 12 0 P48039 P48039 MTNR1A Melatonin receptor type 1A 1 PS(0.923)PLMT(0.077)NNNVVK 78.814 0.026045 9636600 1657.7 1789 1765 1836 1919.8 1667.5 1874.1 2059.6 2143.2 2341.8 TRUE FALSE 1680.912914 1984.32907 1319.403921 1718.247178 2181.309262 1963.207712 2229.700692 1884.624124 2349.063936 1864.539875 0.901516206 1.064245982 0.707629769 0.921539518 1.169891453 1.052918062 1.195845003 1.010771692 1.259862537 1 10.86460394 -6.703759739 6.697517575 1.116190905 0.894768782 0.477887445 0.110779777 0.179570132 16.14077002 0.031648521 0.040677441 1.98E-07 6.703759739 -0.221422123 PS(ph)PS(ph)S(ph)RT(ph)PRDWSASR ddPTM_K562_Paclitaxel_30min_R1 1 PSPSSRTPRDWSASR 15 2 C9JFY7 C9JFY7 TMEM198 4 PS(0.998)PS(0.998)S(0.988)RT(0.97)PRDWS(0.004)AS(0.041)R 50.791 0.030885 0 153.53 158.8 144.5 172.02 232.56 0 131.25 145.73 58.851 192.84 TRUE FALSE 155.6798937 176.138321 108.0191878 160.9874071 264.2386093 0 156.1540023 133.3493269 64.5039015 153.5391021 1.013942973 1.147188687 0.703528849 1.048510802 1.720985766 0 1.017030842 0.868504016 0.420113838 1 7.262462307 -7.256978399 24.99994367 0.675155073 1.100094379 0.286988275 0.365477626 572.843324 3210296.123 0.121682065 0.117696624 5.53E-08 7.256978399 0.424939306 PS(ph)RS(ph)MES(ph)SPRK ddPTM_K562_Paclitaxel_30min_R1 1 PSRSMESSPRK 11 2 Q1ED39;H3BPL4 Q1ED39 KNOP1 Lysine-rich nucleolar protein 1 3 PS(1)RS(1)MES(0.999)S(0.001)PRK 70.26 0.025392 13624000 713.54 616.32 587.58 532.7 661.38 693.9 698.01 657.6 571.21 608.3 TRUE FALSE 723.5317615 683.6119019 439.2381619 498.5350063 751.4711533 816.9534222 830.4537536 601.7327754 626.0772727 484.3281261 1.493887558 1.411464388 0.906902032 1.029333172 1.551574465 1.686776749 1.714651099 1.24240725 1.292671722 1 8.919840976 -6.772478485 24.99934585 1.455403954 1.203080544 0.1207731 0.255956229 399.7103857 905188.2947 0.084098387 0.096246882 1.69E-07 6.772478485 -0.252323411 PS(ph)S(ph)TY(ph)S(ph)LERDK ddPTM_K562_Paclitaxel_30min_R1 1 PSSTYSLERDK 11 1 A0A286YFA5;Q8NGQ1 A0A286YFA5 OR9G4 Olfactory receptor 9G4 4 PS(0.987)S(0.845)T(0.319)Y(0.942)S(0.906)LERDK 51.643 0.030466 3186100 352.17 246.38 410.42 358.5 302.21 479.81 331.36 290.78 120.94 356.99 TRUE FALSE 357.1014665 273.2806016 306.804395 335.5074146 343.3761185 564.8975666 394.2338302 266.076424 132.5568274 284.235242 1.256358867 0.961459246 1.079403077 1.180386402 1.208070175 1.987429717 1.386998415 0.936113418 0.466363096 1 8.150941634 -8.449488334 4.468680529 0.721034498 1.289408142 0.396643313 0.285300914 0.232442964 8.655622026 0.189686994 0.08257911 3.55E-09 8.449488334 0.568373644 PS(ph)YEEMLRFY(ph)SYYK ddPTM_K562_Paclitaxel_30min_R1 1 PSYEEMLRFYSYYK 14 1 K7EM05;Q8NC06;Q8NC06-2;Q8NC06-3 K7EM05 ACBD4 Acyl-CoA-binding domain-containing protein 4 2 PS(0.47)Y(0.515)EEMLRFY(0.545)S(0.394)Y(0.02)Y(0.055)K 40.616 0.030858 0 304.19 398.6 449.43 480.61 423.29 346.35 420.63 579.18 395.48 507.24 TRUE FALSE 308.4495985 442.120496 335.965838 449.7858257 480.9492644 407.7703095 500.4423467 529.9750439 433.4676211 403.8642096 0.763745812 1.094725617 0.831878216 1.113705585 1.190868745 1.009671815 1.239135172 1.312260486 1.073300408 1 8.65772649 -6.373995939 5.479615702 1.151602272 0.917662153 0.440677484 0.121279007 0.208943045 8.706056177 0.033563891 0.050274767 4.23E-07 6.373995939 -0.233940119 PSHLLT(ph)S(ph)QLPLMWQLY(ph)PEERYMDNNSR ddPTM_K562_Paclitaxel_30min_R1 1 PSHLLTSQLPLMWQLYPEERYMDNNSR 27 1 P56278 P56278 MTCP1 Protein p13 MTCP-1 3 PS(0.145)HLLT(0.879)S(0.973)QLPLMWQLY(0.633)PEERY(0.367)MDNNS(0.003)R 48.867 0.019801 0 188.48 86.18 0 165.5 194.46 0 161.79 68.257 0 152.29 TRUE FALSE 191.1193015 95.58942384 0 154.8855708 220.9487442 0 192.4888079 62.4581418 0 121.2532144 1.576199876 0.788345483 0 1.277372905 1.822209377 0 1.587494475 0.51510504 0 1 6.921879183 -8.494893606 24.13613338 0.41918392 0.969478402 0.112542699 0.632269904 918.1918862 791911.1639 0.342389794 0.163780787 3.20E-09 8.494893606 0.550294482 PSIWDEPEDLLAGPS(ph)SDLR ddPTM_K562_Paclitaxel_30min_R1 1 PSIWDEPEDLLAGPSSDLR 19 0 Q8NBB4 Q8NBB4 ZSCAN1 Zinc finger and SCAN domain-containing protein 1 1 PSIWDEPEDLLAGPS(0.5)S(0.5)DLR 59.469 0.03011 110580000 55.702 0 177.71 0 110.37 0 65.565 0 0 0 TRUE FALSE 56.48199986 0 132.8449126 0 125.4042626 0 78.00561648 0 0 0 0 PSMS(ph)PTPLDR ddPTM_K562_Paclitaxel_30min_R1 2 PSMSPTPLDR 10 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 PSMS(0.992)PT(0.008)PLDR;PS(0.03)MS(0.806)PT(0.164)PLDR 110.84 0.0051345 23128000 1903.82 1722.08 3138.6 2448.6 1823.7 1598.75 1731.81 2321.45 1459.29 2802.3 TRUE FALSE 1930.479354 1910.102518 2346.221612 2291.557756 2072.118815 1882.265865 2060.411907 2124.228332 1599.461325 2231.189722 0.865224205 0.856091483 1.051556302 1.027056432 0.928705791 0.843615335 0.923458855 0.952060827 0.716864778 1 11.12359748 -7.009117793 24.55324997 0.88643556 0.953949702 0.098069035 0.090267486 848.3362334 2284487.395 0.029383358 0.03162112 9.79E-08 7.009117793 0.067514141 PSMSPT(ph)PLDR ddPTM_K562_Paclitaxel_30min_R1 1 PSMSPTPLDR 10 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 PSMS(0.471)PT(0.529)PLDR 123.51 0.0049821 10858000 2002.1 1932.4 3037.4 2283.5 1730.7 1598.2 1730.8 2395.5 1249.6 2672.7 TRUE FALSE 2030.135577 2143.385967 2270.570804 2137.046531 1966.450641 1881.61833 2059.210265 2191.987323 1369.629663 2128.002273 0.95401006 1.007229172 1.066996419 1.004250117 0.924082961 0.884218196 0.967672963 1.03006813 0.643622275 1 11.05528398 -6.774992621 4.411284602 0.910430007 1.013349495 0.18776515 0.101955832 0.350595708 16.1731349 0.031000999 0.03751185 1.68E-07 6.774992621 0.102919488 PSSS(ph)PVIFAGGQDR ddPTM_K562_Paclitaxel_30min_R1 1 PSSSPVIFAGGQDR 14 0 H3BSS4;Q15366-6;Q15366-3;Q15366;Q15366-2 H3BSS4 PCBP2 Poly(rC)-binding protein 2 1 PS(0.001)S(0.11)S(0.889)PVIFAGGQDR 99.834 0.0071946 12888000 1023 922.24 1145.5 1033.9 757.26 957.59 805.67 1171.7 568.09 1258.4 TRUE FALSE 1037.325156 1022.933282 856.3043576 967.5902816 860.4116325 1127.405141 958.5416766 1072.156771 622.6575828 1001.937389 1.03531934 1.020955294 0.854648571 0.965719307 0.858747904 1.125225142 0.956688199 1.070083603 0.621453585 1 9.968576642 -8.737920776 24.99998806 0.810726199 0.981471542 0.263770523 0.11688973 259.4729482 275818.2003 0.074553282 0.028142823 1.83E-09 8.737920776 0.170745343 PST(ph)DVRALQRYMCSR ddPTM_K562_Paclitaxel_30min_R1 1 PSTDVRALQRYMCSR 15 2 Q96A09 Q96A09 FAM46B Protein FAM46B 1 PS(0.001)T(0.892)DVRALQRY(0.002)MCS(0.105)R 49.31 0.031159 0 611.05 553.06 1222.8 669.15 483.77 475.24 516.62 700.63 522.84 779.17 TRUE FALSE 619.6065853 613.4449611 914.0890166 626.233714 549.6676643 559.5171413 614.6459481 641.1071083 573.0611181 620.3747263 0.998761811 0.988829711 1.473446576 1.009444272 0.886025238 0.901901895 0.990765616 1.033419127 0.923733824 1 9.276996103 -6.505433582 24.80713227 0.955867849 1.15456957 0.313568386 0.130931629 818.0886647 1163327.392 0.038001213 0.054984531 3.12E-07 6.505433582 0.198701721 PSTRILS(ph)IMY(ph)YAR ddPTM_K562_Paclitaxel_30min_R1 1 PSTRILSIMYYAR 13 1 Q9UJA5-3;Q9UJA5-2;Q9UJA5 Q9UJA5-3 TRMT6 tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 2 PSTRILS(0.999)IMY(0.5)Y(0.5)AR 64.04 0.03013 13338000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 PSVY(ph)WT(ph)ERFLEDT(ph)TLTITVPAVSRR ddPTM_K562_Paclitaxel_30min_R1 1 PSVYWTERFLEDTTLTITVPAVSRR 25 2 Q9P2T0-2 Q9P2T0-2 3 PS(0.157)VY(0.896)WT(0.942)ERFLEDT(0.425)T(0.424)LT(0.051)IT(0.051)VPAVS(0.054)RR 51.834 0.011232 9413100 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 PT(ph)ET(ph)LERSLEMNKHK ddPTM_K562_Paclitaxel_30min_R1 1 PTETLERSLEMNKHK 15 2 Q2KHT3;Q2KHT3-2 Q2KHT3 CLEC16A Protein CLEC16A 2 PT(1)ET(1)LERSLEMNKHK 90.759 0.0046546 4138400 1031.3 1310.6 1205.2 1613.8 1288.7 1164.8 1030.7 1366.9 1336.7 1072.6 TRUE FALSE 1045.741382 1453.69574 900.9323543 1510.298091 1464.242758 1371.360925 1226.269944 1250.773313 1465.096008 854.0035312 1.224516461 1.702212798 1.054951556 1.768491623 1.714562884 1.605802406 1.435907346 1.464599697 1.715562002 1 9.738098225 -11.1534468 4.040144746 0.999816469 1.523716136 0.331398886 0.221857473 19833721.74 7822047.391 33685.5799 0.051984301 7.02E-12 11.1534468 0.523899667 PT(ph)T(ph)AVTPQATSGLPPT(ph)AT(ph)LR ddPTM_K562_Paclitaxel_30min_R1 1 PTTAVTPQATSGLPPTATLR 20 0 A0A0G2JN42;A0A0G2JNJ8;Q6W4X9 A0A0G2JN42 MUC6 Mucin-6 4 PT(0.997)T(0.997)AVT(0.18)PQAT(0.254)S(0.252)GLPPT(0.675)AT(0.646)LR 41.996 0.027114 12502000 306.26 129 450.32 230.98 297.14 214.62 166.25 269.39 445.24 329.59 TRUE FALSE 310.5485849 143.0846562 336.6311465 216.1659766 337.6154986 252.6798436 197.7950696 246.503638 488.0072914 262.4193771 1.183405693 0.545251871 1.28279836 0.823742435 1.286549425 0.962885616 0.753736526 0.939349985 1.859646558 1 8.035730442 -8.715248173 24.99999649 1.429826015 0.966270377 0.279517199 0.293749978 125.6046731 67980.82728 0.183477305 0.06934734 1.93E-09 8.715248173 -0.463555638 PTGS(ph)SRGPRMST(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 PTGSSRGPRMSTR 13 2 H3BM29 H3BM29 CALML4 2 PTGS(0.74)S(0.26)RGPRMS(0.001)T(0.999)R 106.3 0.0051062 44013000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 PTVPS(ph)S(ph)QRLPEPRAS(ph)S(ph)S(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 PTVPSSQRLPEPRASSSK 18 2 H0Y517;H7C1U3;Q5T0F9-3;Q5T0F9-2;Q5T0F9 H0Y517 CC2D1B Coiled-coil and C2 domain-containing protein 1B 5 PT(0.601)VPS(0.7)S(0.7)QRLPEPRAS(1)S(1)S(1)K 42.322 0.030096 13757000 383.38 358.86 497.69 291.68 348.38 285.94 336.72 620.7 597.92 514.25 TRUE FALSE 388.7485028 398.0415484 372.0420041 272.9729503 395.8352541 336.6474442 400.6108622 567.9676607 655.3528876 409.4455677 0.949450998 0.972147655 0.908648264 0.66668923 0.966759162 0.822203171 0.978422759 1.387162801 1.600586108 1 8.67752786 -8.189999687 4.035534613 1.372851062 0.882596238 0.600897252 0.162322921 0.137637487 4.338069004 0.080680351 0.043324177 6.46E-09 8.189999687 -0.490254824 PVTHRKS(ph)DASDMNSDTSPSCR ddPTM_K562_Paclitaxel_30min_R1 1 PVTHRKSDASDMNSDTSPSCR 21 2 Q86WR7;Q86WR7-2;X6RHS9 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 PVT(0.195)HRKS(0.803)DAS(0.001)DMNSDTSPSCR 70.987 0.0033927 4533100 979.47 1287.5 1527.5 970.28 834.62 896.11 904.96 1551.7 1487.8 2165.1 TRUE FALSE 993.1856019 1428.073604 1141.863733 908.0505836 948.3093742 1055.022526 1076.671436 1419.8734 1630.709838 1723.851432 0.576143387 0.828420349 0.662391035 0.52675687 0.550110849 0.612014764 0.624573218 0.82366344 0.945968897 1 10.75141973 -8.518054077 2.081774948 0.98741794 0.625944981 0.763851207 0.078763011 0.175724774 1.387876185 0.073887991 0.024286131 3.03E-09 8.518054077 -0.36147296 PY(ph)AY(ph)MY(ph)NS(ph)DK ddPTM_K562_Paclitaxel_30min_R1 1 PYAYMYNSDK 10 0 H7C3Y8;A0A3B3ITK3;A0A3F2YNW9;A0A3B3IUA1;A0A3B3IU40;A0A3B3IT28;A0A3B3ITE5;A0A3B3ITF7;A0A3B3ITW6;Q12756;Q12756-3;Q12756-2 H7C3Y8 KIF1A Kinesin-like protein KIF1A 4 PY(1)AY(1)MY(1)NS(1)DK 47.603 0.027374 26389000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 PY(ph)LDSQRAACR ddPTM_K562_Paclitaxel_30min_R1 1 PYLDSQRAACR 11 1 A0A0C4DGC6;A0A2R8Y3M9;Q9BZM1 A0A0C4DGC6 PLA2G12A Group XIIA secretory phospholipase A2 1 PY(0.897)LDS(0.103)QRAACR 53.751 0.030163 0 1053.8 1228.8 1603.3 1421 1432.5 1138 1129.2 1666.9 1180.9 1296.5 TRUE FALSE 1068.556451 1362.96454 1198.527086 1329.86342 1627.630752 1339.808322 1343.459805 1525.286441 1294.330721 1032.272588 1.035149498 1.32035332 1.161056778 1.288287062 1.576745107 1.29792105 1.301458375 1.47760045 1.253865245 1 10.01160827 -6.514868571 24.81550935 1.348399199 1.1932813 0.127311205 0.156874586 591.3090919 1831877.2 0.043145562 0.058472126 3.06E-07 6.514868571 -0.155117899 PY(ph)RLATPVY(ph)ASLTPRS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 PYRLATPVYASLTPRSR 17 2 H0Y713;Q86YN6-6;Q86YN6-5;Q86YN6-4;Q86YN6-2;Q86YN6-3;Q86YN6 H0Y713 PPARGC1B Peroxisome proliferator-activated receptor gamma coactivator 1-beta 3 PY(0.97)RLAT(0.03)PVY(0.914)AS(0.26)LT(0.251)PRS(0.573)R 47.016 0.030641 6577200 595.68 648.36 933.41 850.67 739.67 909.46 748.12 872.1 767.82 825.42 TRUE FALSE 604.0213578 719.1501374 697.7591012 796.1118337 840.4255767 1070.739962 890.0718646 798.0096615 841.5725417 657.1989509 0.919084483 1.094265498 1.0617167 1.211371127 1.278799328 1.629247825 1.354341578 1.214258879 1.28054456 1 9.360186367 -6.337680955 1.813188365 1.322543872 1.009325737 0.381844117 0.151260637 0.360949475 2.320490098 0.049004426 0.093851095 4.60E-07 6.337680955 -0.313218135 PY(ph)WDMSGQDVIKAVEDGFR ddPTM_K562_Paclitaxel_30min_R1 1 PYWDMSGQDVIKAVEDGFR 19 1 H0YCC9;J3KQG3;Q5JZY3-3;Q5JZY3 H0YCC9 EPHA10 Ephrin type-A receptor 10 1 PY(0.978)WDMS(0.022)GQDVIKAVEDGFR 54.768 0.026025 27761000 0 110.02 184.03 0 0 0 120.78 168.57 0 139.33 TRUE FALSE 0 122.0323557 137.5693504 0 0 0 143.6973745 154.2489263 0 110.9344695 0 1.100040016 1.240095626 0 0 0 1.295335662 1.39045084 0 1 6.793563899 -7.76701838 24.99446021 0.953984126 0.425479211 0.17865048 0.55335256 270.685182 1212680.127 0.241592966 0.168041601 1.71E-08 7.76701838 -0.528504916 QAAPPIELDAVWEDIRER ddPTM_K562_Paclitaxel_30min_R1 2 QAAPPIELDAVWEDIRER 18 1 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 ; 237.4 8.75E-52 20658100 2100.95 2424.2 2904.8 2509.5 2221.59 2180 2249.13 2930.8 2377.35 2760.1 FALSE TRUE 2130.369782 2688.882354 2171.447314 2348.551902 2524.20817 2566.592391 2675.890676 2681.810247 2605.70509 2197.590105 0.969411801 1.223559547 0.988103882 1.068694247 1.148625562 1.167912244 1.217647763 1.220341428 1.18571024 1 11.1017066 -6.851793535 3.611750526 1.174328261 1.068204244 0.210235971 0.086553062 0.331753454 8.42383148 0.026482736 0.031013586 1.41E-07 6.851793535 -0.106124017 QACTAQT(ph)PEPLRR ddPTM_K562_Paclitaxel_30min_R1 1 QACTAQTPEPLRR 13 1 F2Z2E2;Q86VI3 F2Z2E2 IQGAP3 Ras GTPase-activating-like protein IQGAP3 1 QACT(0.002)AQT(0.998)PEPLRR 96.773 0.012155 20337000 867.35 837.07 1394.2 1207.2 778.88 1042.5 879.96 1144.8 1442.1 1436 TRUE FALSE 879.495576 928.4641334 1042.216967 1129.775595 884.9766425 1227.372738 1046.927816 1047.542094 1580.620148 1143.342412 0.769232005 0.812061307 0.911552791 0.988134074 0.774025903 1.073495328 0.915673035 0.9162103 1.382455625 1 10.15904182 -7.958133201 0.805613624 1.132266702 0.852920412 0.3706108 0.135684182 0.722129297 0.883560195 0.114739791 0.060237958 1.10E-08 7.958133201 -0.27934629 QADFEAHNILR ddPTM_K562_Paclitaxel_30min_R1 1 QADFEAHNILR 11 0 P49915-2;P49915 P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] 0 116.24 0.0082901 8509200 2755.3 2700 2742.1 3200.6 2205 2365.2 2528.2 3384.1 2397.2 3449.1 FALSE TRUE 2793.882701 2994.795131 2049.822941 2995.327841 2505.358331 2784.635011 3007.912752 3096.599582 2627.461771 2746.171527 1.017373705 1.090534623 0.746429318 1.090728606 0.912309485 1.014006221 1.095311317 1.127606033 0.956772636 1 11.42320602 -7.522341194 24.53419343 1.055428126 0.971306772 0.100390534 0.102105371 33.17357159 1514277.499 0.037683817 0.029549691 3.00E-08 7.522341194 -0.084121355 QADLYISEGLHPR ddPTM_K562_Paclitaxel_30min_R1 2 QADLYISEGLHPR 13 0 P40227;Q92526-3;Q92526 P40227 CCT6A;CCT6B T-complex protein 1 subunit zeta;T-complex protein 1 subunit zeta-2 0 ; 139.3 7.41E-05 19561300 4782.5 4462.9 6177.6 6254.4 4184.7 5044 5000.3 5456.2 4890.4 6244.4 FALSE TRUE 4849.469755 4950.174515 4617.988476 5853.270778 4754.726988 5938.482579 5949.080822 4992.661753 5360.144771 4971.787852 0.975397563 0.995652804 0.928838602 1.177296971 0.956341487 1.194436037 1.196567713 1.00419847 1.078112126 1 12.27954902 -6.247481442 24.9627987 1.090516757 0.969531967 0.314405639 0.081086681 954.6354195 1707296.404 0.021919877 0.037728373 5.66E-07 6.247481442 -0.12098479 QADPQPQAWPPPDS(ph)PVRVDTVR ddPTM_K562_Paclitaxel_30min_R1 1 QADPQPQAWPPPDSPVRVDTVR 22 1 K7ERU2;Q63ZY3-3;Q63ZY3;Q63ZY3-2 K7ERU2 KANK2 KN motif and ankyrin repeat domain-containing protein 2 1 QADPQPQAWPPPDS(0.996)PVRVDT(0.004)VR 130.89 3.44E-11 31728000 816.84 817.12 1018 823.25 810.91 645.86 673.75 1028.6 836.79 1165.4 TRUE FALSE 828.2782802 906.3359249 760.9933095 770.4504297 921.3696708 760.3942027 801.5905453 941.2140097 917.1674184 927.8908403 0.892646251 0.976769988 0.820132365 0.830324426 0.992972051 0.8194867 0.863884533 1.014358553 0.988443229 1 9.857811282 -8.264010814 24.97412183 1.001050676 0.885705171 0.464713161 0.056931681 208.5198935 2025143.74 0.029881625 0.015380382 5.44E-09 8.264010814 -0.115345505 QAEQLS(ph)AAGEGGDAGR ddPTM_K562_Paclitaxel_30min_R1 2 QAEQLSAAGEGGDAGR 16 0 F8WBJ6;Q9NRX1 F8WBJ6 PNO1 RNA-binding protein PNO1 1 QAEQLS(1)AAGEGGDAGR;QAEQLS(1)AAGEGGDAGR 115.2 0.00070421 22736000 1551.42 1425.91 1523.3 1285.99 1141.93 867.75 1101.69 1422.94 1146.53 1611.09 TRUE FALSE 1573.144667 1581.595676 1138.724075 1203.512357 1297.480199 1021.633279 1310.729926 1302.052365 1256.659329 1282.748974 1.226385442 1.232973644 0.887721681 0.938229055 1.011484106 0.796440535 1.021813272 1.015048456 0.979661146 1 10.32502316 -5.753228619 24.99938124 0.954793218 1.229679707 0.731573766 0.066233353 88.14288397 268363.5621 0.017099365 0.04361621 1.77E-06 5.753228619 0.274886488 QAESLS(ph)LTR ddPTM_K562_Paclitaxel_30min_R1 3 QAESLSLTR 9 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E9PGW9;E7EV93;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 QAES(0.022)LS(0.682)LT(0.296)R;QAES(0.022)LS(0.69)LT(0.287)R;QAES(0.01)LS(0.708)LT(0.281)R 95.477 0.013543 62795000 3658.45 3325.32 4116.1 3571.05 3228.51 3849.14 3701.08 4326.1 3507.57 4576.9 TRUE FALSE 3709.679587 3688.389683 3076.939648 3342.018836 3668.287721 4531.730934 4403.340609 3958.570802 3844.487771 3644.125268 1.017989041 1.012146788 0.844356168 0.917097682 1.006630522 1.243571667 1.208339529 1.086288344 1.054982331 1 11.83135684 -7.043084544 7.071702784 1.129680908 0.946873884 0.504439019 0.080107723 0.195647492 26.73453629 0.027798888 0.028247267 9.06E-08 7.043084544 -0.182807024 QAGEVTYADAHKER ddPTM_K562_Paclitaxel_30min_R1 1 QAGEVTYADAHKER 14 1 Q13247-3;Q13247;A0A590UJK4;A0A590UK01;A0A590UJP7;A0A590UK80 Q13247-3 SRSF6 Serine/arginine-rich splicing factor 6 0 113.54 0.0028315 5482600 2853.8 2582.6 4567.2 3380.2 2823.3 2456 2171.6 3588.1 3195.6 4234.2 FALSE TRUE 2893.762005 2864.577002 3414.153874 3163.409101 3207.881259 2891.537116 2583.649763 3283.268509 3502.551658 3371.267716 0.858360192 0.849703211 1.012721077 0.938344079 0.951535603 0.857700236 0.766373359 0.973897295 1.03894201 1 11.71907548 -8.511338268 24.5198162 1.015120607 0.894803145 0.408337545 0.064068748 473.016797 1005023.601 0.041367523 0.018020318 3.08E-09 8.511338268 -0.120317461 QAGIGGEPAAAGAGCS(ph)PRPK ddPTM_K562_Paclitaxel_30min_R1 2 QAGIGGEPAAAGAGCSPRPK 20 1 J3QQY0;J3KSZ8;Q68DK7 J3QQY0 MSL1 Male-specific lethal 1 homolog 1 QAGIGGEPAAAGAGCS(1)PRPK;QAGIGGEPAAAGAGCS(1)PRPK 123.19 1.16E-06 90586000 5020.8 4901.9 8992.8 6469.5 4851.8 4322.3 4185.2 5992.3 6101.1 7449.8 TRUE FALSE 5091.10669 5437.106019 6722.456418 6054.575226 5512.697302 5088.799217 4979.319852 5483.216712 6687.137915 5931.526671 0.85831304 0.916645296 1.133343369 1.020744837 0.92938928 0.857924022 0.839466823 0.924419128 1.127388999 1 12.53418776 -8.746735179 24.95270631 1.063694503 0.937941684 0.257191719 0.087351337 312.6325654 530536.3596 0.066113573 0.024751021 1.79E-09 8.746735179 -0.125752819 QALDS(ph)EEEEEDVAAKETLLR ddPTM_K562_Paclitaxel_30min_R1 3 QALDSEEEEEDVAAKETLLR 20 1 Q8NC44;H7C3D5 Q8NC44 FAM134A Protein FAM134A 1 QALDS(0.549)EEEEEDVAAKET(0.451)LLR;QALDS(1)EEEEEDVAAKETLLR;QALDS(1)EEEEEDVAAKETLLR 124.66 9.20E-07 51583000 2426.45 2440.6 4208.7 3038.07 1786.83 1849.71 1569.01 2452.44 3716.9 3221.04 TRUE FALSE 2460.427786 2707.072962 3146.161632 2843.221788 2030.226497 2177.730097 1866.721457 2244.089914 4073.924853 2564.59028 0.959384353 1.055557678 1.226769694 1.108645623 0.791637757 0.849153221 0.727882918 0.875028628 1.58852854 1 11.32451264 -6.692549045 24.99998794 0.947433862 1.095243804 0.049711152 0.232089187 142.7663652 51806.73138 0.070572781 0.091109047 2.03E-07 6.692549045 0.147809942 QALPCVAES(ph)PTVHVEVHQR ddPTM_K562_Paclitaxel_30min_R1 1 QALPCVAESPTVHVEVHQR 19 0 Q15645-2;Q15645 Q15645-2 TRIP13 Pachytene checkpoint protein 2 homolog 1 QALPCVAES(0.953)PT(0.047)VHVEVHQR 99.943 0.0006464 22332000 1012.8 839.46 793.86 673.21 619.56 770.63 657.07 843.42 660.36 1006.4 TRUE FALSE 1026.982325 931.1150817 593.4402247 630.0333238 703.9545612 907.2904103 781.7456024 771.7662065 723.7905286 801.2951276 1.281653026 1.162012659 0.740601314 0.786268757 0.878520956 1.132279954 0.975602591 0.963148508 0.903275839 1 9.646189894 -5.584170824 6.73364269 0.924551655 1.253180913 0.577297206 0.104630517 0.136567357 11.62355129 0.029574076 0.080379141 2.61E-06 5.584170824 0.328629258 QALQRELQHEKDTSS(ph)LLR ddPTM_K562_Paclitaxel_30min_R1 1 QALQRELQHEKDTSSLLR 18 2 H0YA47;Q96T51-2;Q96T51 H0YA47 RUFY1 RUN and FYVE domain-containing protein 1 1 QALQRELQHEKDT(0.068)S(0.209)S(0.723)LLR 50.752 0.027381 54279000 1315.9 1442.4 760.12 1252.4 1689.2 1309.3 1311.5 1213.5 1528.9 1120.1 TRUE FALSE 1334.32666 1599.88611 568.218305 1172.07667 1919.297638 1541.485972 1560.350279 1110.405601 1675.757676 891.8230052 1.496178785 1.793950258 0.637142462 1.314248077 2.152105998 1.728466257 1.74961878 1.245096386 1.879024948 1 9.800613605 -4.170823012 16.86339388 1.516892392 1.469383172 0 0.432067931 0 0 0.100490318 0 6.75E-05 4.170823012 -0.04750922 QAPELSLS(ph)SQDLEVGGNQGH ddPTM_K562_Paclitaxel_30min_R1 1 QAPELSLSSQDLEVGGNQGH 20 0 O00273-2 O00273-2 DFFA DNA fragmentation factor subunit alpha 1 QAPELS(0.008)LS(0.786)S(0.205)QDLEVGGNQGH 146.15 7.13E-23 0 179.25 305.29 201.17 415.35 154.9 162.77 159.88 235.94 279.89 391.9 TRUE FALSE 181.760053 338.6225946 150.3821455 388.71131 176.0000025 191.6349741 190.2163954 215.8954243 306.7746851 312.0305649 0.582507208 1.085222516 0.481946842 1.245747545 0.564047316 0.614154495 0.609608214 0.691904732 0.983155882 1 8.285543545 -8.769917536 23.86438654 0.9915784 0.740871454 0.16530443 0.230801285 211.5293974 595373.3554 0.200344256 0.055340372 1.70E-09 8.769917536 -0.250706946 QAPFRS(ph)PTAPSVFSPTGNR ddPTM_K562_Paclitaxel_30min_R1 2 QAPFRSPTAPSVFSPTGNR 19 1 H0Y3X6;A0A0C4DFX9;Q9H3P2;C9JEM7;H7C2C7;C9JHL4 H0Y3X6 NELFA Negative elongation factor A 1 QAPFRS(0.959)PT(0.041)APSVFSPTGNR;QAPFRS(0.964)PT(0.035)APS(0.001)VFSPTGNR 91.166 0.0011027 86103000 1904.77 1782.72 2442.47 2175.94 2186.94 1923.02 1815.09 2422.35 1814.79 2097.67 TRUE FALSE 1931.442657 1977.363398 1825.83824 2036.384948 2484.838253 2264.040596 2159.493852 2216.556248 1989.108688 1670.163703 1.156439129 1.183933883 1.093209149 1.219272664 1.487781257 1.355580051 1.292983346 1.327149096 1.190966302 1 10.7057738 -6.525923558 24.9984378 1.302097571 1.149763495 0.171943351 0.120860717 125.5794701 1031020.6 0.034376636 0.044621972 2.98E-07 6.525923558 -0.152334077 QAPGVGAVGGGS(ph)PEREEVGAGYNS(ph)EDEYEAAAAR ddPTM_K562_Paclitaxel_30min_R1 2 QAPGVGAVGGGSPEREEVGAGYNSEDEYEAAAAR 34 1 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3 A0A087WXV6 OTUD5 OTU domain-containing protein 5 2 QAPGVGAVGGGS(0.996)PEREEVGAGY(0.098)NS(0.899)EDEY(0.007)EAAAAR;QAPGVGAVGGGS(0.991)PEREEVGAGY(0.448)NS(0.521)EDEY(0.039)EAAAAR 64.126 0.00019831 328170000 5130.1 4691.4 6240.4 4929.9 4654.2 4231.2 4371.5 5213.4 4581 5202.6 TRUE FALSE 5201.937228 5203.622917 4664.93384 4613.718279 5288.180836 4981.543911 5200.969304 4770.489129 5021.025518 4142.307264 1.255806703 1.256213647 1.126167989 1.113803971 1.276626889 1.202601254 1.255573035 1.151650234 1.212132562 1 12.01621886 -10.3863742 0.854622579 0.991418715 1.206024029 0.556676855 0.055056231 13.60063099 7.149261023 0.461989067 0.018816171 4.11E-11 10.3863742 0.214605314 QAPGVGAVGGGS(ph)PEREEVGAGYNSEDEYEAAAAR ddPTM_K562_Paclitaxel_30min_R1 2 QAPGVGAVGGGSPEREEVGAGYNSEDEYEAAAAR 34 1 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 QAPGVGAVGGGS(0.653)PEREEVGAGY(0.158)NS(0.169)EDEY(0.019)EAAAAR;QAPGVGAVGGGS(0.963)PEREEVGAGY(0.03)NS(0.007)EDEY(0.001)EAAAAR 66.01 6.70E-05 34653000 1557.05 1416.33 1858.82 1519.83 1503.91 1465.83 1498.88 1521.89 1198.25 1878.35 TRUE FALSE 1578.853504 1570.969699 1389.537901 1422.354906 1708.768003 1725.774369 1783.284655 1392.595945 1313.347266 1495.541239 1.0557071 1.05043556 0.929120418 0.951063648 1.142574981 1.15394636 1.192400857 0.931165192 0.878175227 1 10.54645198 -8.404400267 13.33646575 0.927630838 1.063563866 0.340291871 0.083462231 0.986604586 105.374905 0.051304467 0.024636472 3.94E-09 8.404400267 0.135933028 QAPGVGAVGGGSPEREEVGAGYNS(ph)EDEYEAAAAR ddPTM_K562_Paclitaxel_30min_R1 3 QAPGVGAVGGGSPEREEVGAGYNSEDEYEAAAAR 34 1 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3 A0A087WXV6 OTUD5 OTU domain-containing protein 5 1 QAPGVGAVGGGS(0.096)PEREEVGAGY(0.379)NS(0.412)EDEY(0.113)EAAAAR;QAPGVGAVGGGSPEREEVGAGY(0.129)NS(0.856)EDEY(0.016)EAAAAR;QAPGVGAVGGGS(0.001)PEREEVGAGY(0.456)NS(0.541)EDEY(0.002)EAAAAR 111.64 3.65E-23 61492000 1356.65 1136.06 1158.58 1244 1019.87 884.55 1091.78 1247.31 755.88 1390.24 TRUE FALSE 1375.647286 1260.098873 866.0821499 1164.215408 1158.793561 1041.412523 1298.939556 1141.34323 828.4856514 1106.908325 1.242783395 1.138394973 0.782433496 1.051772204 1.046874013 0.940829967 1.173484313 1.031109085 0.748468173 1 10.11232003 -5.534792625 24.99090033 0.982993701 1.216686363 0.355852116 0.120576784 202.8582625 425521.2836 0.030624499 0.081157593 2.92E-06 5.534792625 0.233692662 QAPLPS(ph)PESLDLGRSDGL ddPTM_K562_Paclitaxel_30min_R1 1 QAPLPSPESLDLGRSDGL 18 1 H3BRS1;Q12968 H3BRS1 NFATC3 "Nuclear factor of activated T-cells, cytoplasmic 3" 1 QAPLPS(0.775)PES(0.225)LDLGRSDGL 121.03 0.00015427 12734000 1795.6 1346.2 1955.8 1545.7 1416.1 1478.9 1180.7 1475.7 2329.3 1785.7 TRUE FALSE 1820.74394 1493.182669 1462.034101 1446.56572 1608.996795 1741.16215 1404.731661 1350.330074 2553.039673 1421.77336 1.280614753 1.050225522 1.028317271 1.017437632 1.131683038 1.224641141 0.988013773 0.949750581 1.795672746 1 10.47347579 -8.718912805 24.99999676 1.39784573 1.081745616 0.276252801 0.203273808 144.3885787 84881.46488 0.126516202 0.047817823 1.91E-09 8.718912805 -0.316100114 QAQAQES(ph)EEEEESR ddPTM_K562_Paclitaxel_30min_R1 4 QAQAQESEEEEESR 14 0 H0YLQ7;Q9NVM6 H0YLQ7 DNAJC17 DnaJ homolog subfamily C member 17 1 QAQAQES(0.921)EEEEES(0.079)R;QAQAQES(0.965)EEEEES(0.035)R;QAQAQES(0.5)EEEEES(0.5)R;QAQAQES(0.846)EEEEES(0.154)R 213 2.75E-18 132490700 8570.53 8300.79 9559.61 8597.43 7492.72 6985.07 7323.17 8316.44 7145.06 8833.59 TRUE FALSE 8690.543862 9207.098324 7146.168224 8046.02932 8513.355317 8223.774089 8712.703278 7609.906512 7831.374938 7033.299509 1.235628292 1.309072408 1.016047762 1.143990713 1.210435487 1.169262603 1.238778935 1.081982433 1.113470986 1 12.77998594 -14.99999998 0.110136511 0.431331574 1.269032357 0.367496768 0.07584461 199.6699003 1.45914036 25.31788347 1.002874718 1.00E-15 14.99999998 0.837700783 QAQAQES(ph)EEEEESRSTR ddPTM_K562_Paclitaxel_30min_R1 2 QAQAQESEEEEESRSTR 17 1 H0YLQ7;Q9NVM6 H0YLQ7 DNAJC17 DnaJ homolog subfamily C member 17 1 QAQAQES(1)EEEEESRSTR;QAQAQES(1)EEEEESRSTR 104.38 0.0010506 31736000 1136.06 1344.16 1539.52 1447.23 1343.79 986.63 1009.58 1219.75 2986.3 1220.52 TRUE FALSE 1151.968345 1490.919934 1150.849135 1354.411145 1526.836949 1161.594978 1201.142535 1116.124624 3273.147458 971.777354 1.185424151 1.534219673 1.184272437 1.393746355 1.5711798 1.195330363 1.236026472 1.148539446 3.368207177 1 9.924482003 QAQT(ph)QTSPEHLVLQQK ddPTM_K562_Paclitaxel_30min_R1 1 QAQTQTSPEHLVLQQK 16 0 H0Y5D5;A0A494C0L7;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-3;Q9ULV3-4;Q9ULV3-2;Q9ULV3 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 1 QAQT(0.743)QT(0.156)S(0.101)PEHLVLQQK 76.761 0.028717 77378000 3490.9 2997.7 5991.4 3754.1 3125.4 3180.3 2532.4 3236.9 3593.3 4328.5 TRUE FALSE 3539.78337 3324.999024 4478.796969 3513.328829 3551.132393 3744.281551 3012.90968 2961.905141 3938.45252 3446.349324 1.02711102 0.96478874 1.29957719 1.019434915 1.030404077 1.086448644 0.874232237 0.859432652 1.142789703 1 11.75085323 -7.737228712 24.96673645 0.957399679 1.072613611 0.166422848 0.110774009 375.9565456 387697.0167 0.042591577 0.032974685 1.83E-08 7.737228712 0.115213932 QAQTQTS(ph)PEHLVLQQK ddPTM_K562_Paclitaxel_30min_R1 1 QAQTQTSPEHLVLQQK 16 0 H0Y5D5;A0A494C0L7;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-3;Q9ULV3-4;Q9ULV3-2;Q9ULV3 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 1 QAQT(0.058)QT(0.206)S(0.736)PEHLVLQQK 103.71 0.0016721 94944000 3077.3 2758.3 5015.6 2976.8 2555.2 2251.5 2343 3367.4 2939.6 3898.5 TRUE FALSE 3120.391694 3059.460522 3749.349748 2785.881372 2903.2615 2650.771912 2787.572019 3081.318351 3221.961714 3103.98356 1.005286154 0.985656162 1.207915466 0.897518082 0.935334045 0.85399032 0.898062752 0.992698026 1.038008627 1 11.5999052 -6.314074387 24.99999266 0.938621678 1.058223967 0.345335954 0.075863842 371.5535708 176475.5801 0.022105824 0.032788265 4.85E-07 6.314074387 0.119602289 QAREES(ph)EES(ph)EAEPVQR ddPTM_K562_Paclitaxel_30min_R1 1 QAREESEESEAEPVQR 16 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 2 QAREES(1)EES(1)EAEPVQR 114.28 0.0097272 13168000 2267.8 1732.6 2608.6 1768.6 1624.6 1757.8 1734.4 2434.2 2347.3 2516.4 TRUE FALSE 2299.556197 1921.771127 1950.026667 1655.169912 1845.898025 2069.521149 2063.493346 2227.399516 2572.768653 2003.556299 1.14773725 0.959179998 0.973282692 0.826115998 0.921310784 1.032923882 1.02991533 1.111722949 1.284101003 1 10.96834733 -8.033537904 1.804817661 1.151128308 0.963281284 0.324948704 0.099822725 0.39918696 2.530872498 0.064476861 0.031538555 9.26E-09 8.033537904 -0.187847024 QAREES(ph)EESEAEPVQR ddPTM_K562_Paclitaxel_30min_R1 1 QAREESEESEAEPVQR 16 1 Q9BW71 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 QAREES(0.993)EES(0.007)EAEPVQR 92.492 0.0059995 18902000 652.69 668.25 991.84 973.85 580.03 607.73 584.57 640.56 460.47 616.67 TRUE FALSE 661.8296737 741.2117949 741.4377251 911.3916198 659.039906 715.5023825 695.4891058 586.1404297 504.7002009 490.9923155 1.347943039 1.50961995 1.5100801 1.856223796 1.342261142 1.457257802 1.416496926 1.19378738 1.027918737 1 8.939556635 -8.361148496 1.220591357 0.980979833 1.524821525 0.692267487 0.132602261 0.274334118 0.716964034 0.120078613 0.043992166 4.35E-09 8.361148496 0.543841693 QAS(ph)LDGLQQLR ddPTM_K562_Paclitaxel_30min_R1 1 QASLDGLQQLR 11 0 Q3MII6 Q3MII6 TBC1D25 TBC1 domain family member 25 1 QAS(1)LDGLQQLR 84.62 0.027574 45850000 508.55 393.94 686.45 513.66 477.66 304.71 408.89 684.51 333.97 482.67 TRUE FALSE 515.671269 436.9517014 513.1472076 480.7161467 542.7253789 358.7460402 486.474743 626.3566029 366.0493107 384.3015891 1.341840064 1.137002068 1.335272146 1.250882537 1.412238186 0.933501319 1.265867113 1.629856916 0.952505327 1 8.586095132 QAS(ph)PTEVVER ddPTM_K562_Paclitaxel_30min_R1 3 QASPTEVVER 10 0 C9JW01;A0A0A0MR59;Q8TB72-2;Q8TB72-4;Q8TB72-3;Q8TB72;A0A0C4DG68 C9JW01 PUM2 Pumilio homolog 2 1 QAS(0.5)PT(0.5)EVVER;QAS(0.701)PT(0.299)EVVER;QAS(0.689)PT(0.311)EVVER 156.52 0.00019792 221667000 6289.7 6010.9 8554.2 7275.2 6054.1 5612.4 6162.7 7574.8 5355.3 6729.6 TRUE FALSE 6377.775205 6667.19039 6394.586413 6808.601235 6878.770917 6607.680338 7332.040154 6931.27346 5869.700493 5358.103826 1.19030452 1.244318999 1.19344205 1.270710956 1.283806947 1.233212448 1.36840203 1.293605664 1.095480917 1 12.38750682 -8.924161833 3.919988829 1.002324355 1.260514105 0.756964903 0.049365256 0.097748384 2.818407417 0.050716415 0.013386136 1.19E-09 8.924161833 0.25818975 QAS(ph)RMGNHDMAK ddPTM_K562_Paclitaxel_30min_R1 2 QASRMGNHDMAK 12 1 A0A087X0F3;Q9NVH2-4;Q9NVH2-3;Q9NVH2-2;Q9NVH2 A0A087X0F3 INTS7 Integrator complex subunit 7 1 QAS(1)RMGNHDMAK;QAS(1)RMGNHDMAK 71.558 0.020487 19341000 4954.5 4376.4 4453.9 4712.3 3830 3842.9 4494.9 4369 4619.5 5333.3 TRUE FALSE 5023.878286 4854.230152 3329.45786 4410.074169 4351.710842 4524.384358 5347.78381 3997.82618 5063.223615 4246.370532 1.183099366 1.14314804 0.78407144 1.038551425 1.02480714 1.065470929 1.259377572 0.941468991 1.192365004 1 12.05201455 -7.523436041 24.99709426 1.103282277 1.028854049 0.049860144 0.128854925 61.14291764 2742216.682 0.049391597 0.038641409 3.00E-08 7.523436041 -0.074428228 QASPT(ph)EVVER ddPTM_K562_Paclitaxel_30min_R1 1 QASPTEVVER 10 0 C9JW01;A0A0A0MR59;Q8TB72-2;Q8TB72-4;Q8TB72-3;Q8TB72;A0A0C4DG68 C9JW01 PUM2 Pumilio homolog 2 1 QAS(0.192)PT(0.808)EVVER 127.79 0.0030953 42108000 2001 1740.3 2949.5 2371.3 1944.5 1687.7 1761.4 2309.7 1484.4 2360.8 TRUE FALSE 2029.020174 1930.311839 2204.862246 2219.215432 2209.373821 1986.989899 2095.616455 2113.476568 1626.983252 1879.667664 1.07945687 1.026943154 1.173006425 1.180642448 1.175406623 1.057096388 1.114886687 1.124388427 0.865569634 1 10.87626189 -8.749645205 24.95131425 0.932784826 1.117448785 0.621991876 0.057277196 122.8028994 259800.919 0.040966738 0.015207181 1.78E-09 8.749645205 0.184663959 QATDFQGNDFDNDHNRR ddPTM_K562_Paclitaxel_30min_R1 1 QATDFQGNDFDNDHNRR 17 1 Q16384 Q16384 SSX1 Protein SSX1 0 79.652 0.0076647 28200000 1782.2 1796.2 2125.5 1878.2 1676.3 1894.8 1616.2 1956.9 1841.9 2255.9 FALSE TRUE 1807.156299 1992.31519 1588.891237 1757.740659 1904.64044 2230.816176 1922.865513 1790.64913 2018.822725 1796.146342 1.006129766 1.109216518 0.884611237 0.978617732 1.060403819 1.242001347 1.070550583 0.996939441 1.123974521 1 10.81068918 -6.902447118 5.468311197 1.09212052 0.995841824 0.21782417 0.082010276 0.329295102 15.17598708 0.026665906 0.030389248 1.25E-07 6.902447118 -0.096278695 QATPGVPAQQS(ph)PSM ddPTM_K562_Paclitaxel_30min_R1 1 QATPGVPAQQSPSM 14 0 R4GMQ1;O60341;O60341-2 R4GMQ1 KDM1A Lysine-specific histone demethylase 1A 1 QATPGVPAQQS(1)PSM 126.48 0.000725 8346700 2416.4 1845 2489.2 2128.4 1937.7 1740.9 2012.5 2076.4 2053.3 2477.1 TRUE FALSE 2450.237055 2046.443339 1860.770674 1991.89395 2201.647546 2049.624172 2394.361369 1899.99686 2250.528639 1972.26566 1.242346356 1.037610389 0.943468576 1.009952153 1.116303746 1.03922317 1.214015646 0.963357471 1.141087981 1 10.94563818 -5.258556581 23.75228247 1.052543063 1.242346499 0.342493692 0.079249922 157.3887664 1296629.386 0.019510975 0.130934839 5.51E-06 5.258556581 0.189803436 QATVSWDSGGSDEAPPKPS(ph)RPGYPSPR ddPTM_K562_Paclitaxel_30min_R1 1 QATVSWDSGGSDEAPPKPSRPGYPSPR 27 2 Q05397-5;Q05397;Q05397-7;E7ESA6;H0YBP1;Q05397-6;H0YBZ1;H0YB16;E9PEI4;B4DWJ1;E5RG80;E5RJQ2;E5RHK7;Q05397-2 Q05397-5;Q05397-2 PTK2 Focal adhesion kinase 1 1 QATVS(0.001)WDS(0.085)GGS(0.018)DEAPPKPS(0.328)RPGY(0.296)PS(0.273)PR 44.6 0.023528 7745600 1438.9 1167.4 2708.4 1607.8 1505.8 1368.4 1367.1 1802.6 1470.1 2159.7 TRUE FALSE 1459.049039 1294.86068 2024.630923 1504.682904 1710.915453 1611.066527 1626.500088 1649.457879 1611.309674 1719.551955 0.848505354 0.753022133 1.177417709 0.875043583 0.99497747 0.936910643 0.945885982 0.959237012 0.937052044 1 10.74781699 -5.703796118 24.99999927 0.971132381 0.800763012 0.451152425 0.07801225 69.58843142 30179.35783 0.018486635 0.048911003 1.98E-06 5.703796118 -0.170369369 QAVDVS(ph)PLRR ddPTM_K562_Paclitaxel_30min_R1 1 QAVDVSPLRR 10 1 M0R0F0;M0R0R2;P46782;M0QZN2 M0R0F0 RPS5 "40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed" 1 QAVDVS(1)PLRR 77.42 0.025018 12382000 2777.4 2833.1 3576.1 3282.5 2555.9 2566.9 2582.8 2622.8 2683.3 3330 TRUE FALSE 2816.292169 3142.427439 2673.269326 3071.975142 2904.056852 3022.103674 3072.872817 2399.976769 2941.042954 2651.344172 1.062212971 1.18522049 1.008269449 1.158648196 1.095314928 1.139838315 1.158986769 0.905192466 1.109264872 1 11.37250824 -8.241551729 24.99918947 1.00542148 1.115875568 0.364687053 0.066941172 791.5981464 995057.649 0.029184934 0.016816237 5.73E-09 8.241551729 0.110454088 QAVDVSPLRR ddPTM_K562_Paclitaxel_30min_R1 2 QAVDVSPLRR 10 1 M0R0F0;M0R0R2;P46782;M0QZN2 M0R0F0 RPS5 "40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed" 0 ; 138.25 0.0014599 29690000 5670 5836 6930.4 6116.7 5641.8 5396.4 5320.6 5960.3 6066.5 6772.3 FALSE TRUE 5749.397493 6473.194216 5180.734806 5724.402239 6410.308676 6353.375771 6330.156075 5453.935312 6649.214431 5392.101543 1.066262838 1.200495607 0.960800676 1.061627307 1.188833078 1.178274504 1.173968262 1.011467471 1.233139691 1 12.39663195 -6.734221591 24.98627922 1.136037987 1.073489657 0.09349231 0.088591822 528.0520153 484756.2061 0.025628171 0.033077047 1.84E-07 6.734221591 -0.06254833 QDAPPWGSGVELTHLGS(ph)PSAQR ddPTM_K562_Paclitaxel_30min_R1 1 QDAPPWGSGVELTHLGSPSAQR 22 0 Q8NDX1-2;Q8NDX1 Q8NDX1-2 PSD4 PH and SEC7 domain-containing protein 4 1 QDAPPWGSGVELT(0.004)HLGS(0.754)PS(0.242)AQR 119.64 4.44E-06 37117000 1387.3 1181.4 1986.7 1389.4 1327.3 1050.6 1264.5 1758.6 805.19 2185.3 TRUE FALSE 1406.72648 1310.389247 1485.133014 1300.290103 1508.100731 1236.909159 1504.432274 1609.195953 882.5320972 1739.93466 0.808493854 0.753125549 0.853556773 0.747321225 0.866757106 0.710894028 0.864648718 0.92485999 0.507221402 1 10.76481741 -11.04882295 4.867982939 1.000004939 0.789170569 0.255590025 0.111049707 5.55E-06 1.08E-06 0.100193358 0.024299889 8.94E-12 11.04882295 -0.21083437 QDDATGAGQDS(ph)ENEVSLVSGHQR ddPTM_K562_Paclitaxel_30min_R1 1 QDDATGAGQDSENEVSLVSGHQR 23 0 P16157-14;P16157-10;P16157-12;P16157-21;P16157;P16157-3;P16157-16;P16157-5;P16157-8 P16157-14 ANK1 Ankyrin-1 1 QDDATGAGQDS(1)ENEVSLVSGHQR 121.41 4.85E-07 39838000 1594.6 1589 2779.4 1990.6 1911.8 1790.1 1390 1716.1 1671.7 1748.6 TRUE FALSE 1616.92932 1762.492394 2077.706095 1862.931826 2172.219527 2107.549101 1653.745244 1570.306593 1832.274254 1392.23436 1.161391621 1.265945191 1.492353697 1.33808781 1.560239848 1.513789029 1.18783539 1.127903921 1.3160674 1 10.44318637 -7.855227247 7.620093401 1.16565977 1.392930583 0.419158758 0.133007827 0.25895473 18.28982677 0.058441365 0.039358213 1.40E-08 7.855227247 0.227270813 QDDS(ph)PPRPIIGPALPPGFIK ddPTM_K562_Paclitaxel_30min_R1 1 QDDSPPRPIIGPALPPGFIK 20 1 A0A0A0MRI1;Q8IXQ4-4;Q8IXQ4 A0A0A0MRI1 GPALPP1 GPALPP motifs-containing protein 1 1 QDDS(1)PPRPIIGPALPPGFIK 91.337 0.00069674 39821000 2214.5 1956.3 4086.7 2782.6 1631.4 1618.3 1440.5 2611.7 2118.2 3141.3 TRUE FALSE 2245.509832 2169.89545 3054.962041 2604.13649 1853.6243 1905.282783 1713.827355 2389.819783 2321.662574 2501.101336 0.897808418 0.867575983 1.221446727 1.041195914 0.74112323 0.761777524 0.685229075 0.95550698 0.928256101 1 11.2883478 -6.749293817 24.99364198 0.830909613 1.012364597 0.269619638 0.128953303 297.3485184 611893.3715 0.040541304 0.05193695 1.78E-07 6.749293817 0.181454984 QDEHGYISR ddPTM_K562_Paclitaxel_30min_R1 1 QDEHGYISR 9 0 P04792 P04792 HSPB1 Heat shock protein beta-1 0 99.343 0.02346 2854000 2294.3 2328.7 2483 2543.1 2339.2 2114.6 1875 2410.7 1585.9 2969.6 FALSE TRUE 2326.427279 2582.955341 1856.135941 2379.996948 2657.838643 2489.59462 2230.771462 2205.895988 1738.232781 2364.39389 0.983942349 1.09243868 0.785036685 1.006599179 1.124109927 1.052952569 0.943485547 0.93296468 0.73517056 1 11.20725468 -8.244703301 2.532690341 0.866257742 1.004836008 0.197288912 0.105743698 0.461893398 5.749557696 0.068581176 0.030575179 5.69E-09 8.244703301 0.138578266 QDENDDDDDWNPCK ddPTM_K562_Paclitaxel_30min_R1 1 QDENDDDDDWNPCK 14 0 Q14974;Q14974-2 Q14974 KPNB1 Importin subunit beta-1 0 127.02 0.0021492 4793400 728.38 606.13 1197.7 581.65 543.21 533.51 448.54 623.64 599.3 886.56 FALSE TRUE 738.5795672 672.3093232 895.325822 544.3455724 617.2043986 628.1205076 533.6481235 570.6578894 656.8654427 705.8785854 1.046326638 0.952443291 1.268385018 0.771160344 0.874377565 0.889842135 0.756005543 0.808436325 0.930564344 1 9.463276244 -6.280742785 24.99713702 0.850825844 1.075390842 0.515276007 0.100513723 609.2791958 788990.6176 0.027390739 0.040693431 5.24E-07 6.280742785 0.224564998 QDPSVLHTEEMR ddPTM_K562_Paclitaxel_30min_R1 2 QDPSVLHTEEMR 12 0 F8WAQ7;Q3KNR6;Q8NFI4;P50502 F8WAQ7 ST13;ST13P5 Putative protein FAM10A5;Hsc70-interacting protein 0 ; 133.88 0.0010337 37805000 3088.1 3616.4 4309.6 3095.3 3380.4 3237.1 3132.7 3467.5 2586.41 3961.6 FALSE TRUE 3131.342928 4011.250782 3221.58818 2896.781312 3840.867711 3811.154234 3727.113471 3172.914232 2834.846237 3154.223745 0.992745975 1.27170775 1.021356898 0.918381683 1.217690316 1.208270098 1.181626217 1.005925542 0.898746083 1 11.62306929 -8.460331242 5.20830072 0.949260439 1.117594759 0.292188482 0.107644419 0.263457548 14.3710337 0.06584537 0.029496668 3.46E-09 8.460331242 0.168334319 QDPVTYIS(ph)ETDEEDDFMCKK ddPTM_K562_Paclitaxel_30min_R1 1 QDPVTYISETDEEDDFMCKK 20 1 P35251;P35251-2;D6RAD2 P35251 RFC1 Replication factor C subunit 1 1 QDPVT(0.052)Y(0.139)IS(0.647)ET(0.162)DEEDDFMCKK 57.171 0.023356 20627000 820.72 653.81 2331.2 1038.6 752.31 515.22 490.28 908.01 578.09 965.79 TRUE FALSE 832.2126121 725.1951868 1742.659728 971.9888446 854.7873587 606.587033 583.3080706 830.8688829 633.6181275 768.9614679 1.082255284 0.943083909 2.266251042 1.264028024 1.111612733 0.788839309 0.758566059 1.080507825 0.823992039 1 9.586767497 -6.860473084 2.918213711 0.892722533 1.426109127 0.322461693 0.340446244 0.320521051 5.504819374 0.116508558 0.137427733 1.38E-07 6.860473084 0.533386594 QDS(ph)EKPLLEL ddPTM_K562_Paclitaxel_30min_R1 1 QDSEKPLLEL 10 1 C9JKL2;O95772-2;O95772 C9JKL2 STARD3NL MLN64 N-terminal domain homolog 1 QDS(1)EKPLLEL 76.927 0.023761 0 159.67 62.3 0 144.67 241.51 0 0 0 0 0 TRUE FALSE 161.9058726 69.10212469 0 135.3915137 274.4077508 0 0 0 0 0 0 QDS(ph)QRS(ph)HLSS(ph)FTMKLMDK ddPTM_K562_Paclitaxel_30min_R1 1 QDSQRSHLSSFTMKLMDK 18 2 Q13905-3 Q13905-3 3 QDS(0.999)QRS(0.999)HLS(0.024)S(0.489)FT(0.489)MKLMDK 58.159 0.023757 4321100 193.14 330.57 347.09 325.46 391.58 406.4 370.15 502.74 210.38 407.64 TRUE FALSE 195.8445559 366.6627505 259.4628367 304.5864523 444.9198255 478.4693339 440.3840302 460.029099 230.587939 324.5627442 0.603410463 1.129712997 0.799422735 0.938451679 1.370828394 1.474196723 1.356853299 1.417381099 0.710457202 1 8.342353596 -6.66866272 5.703856574 1.261038432 0.873560137 0.325961165 0.24654254 0.235334454 11.65985391 0.072674195 0.093866457 2.14E-07 6.66866272 -0.387478295 QDS(ph)QRS(ph)HLSSFT(ph)MKLMDK ddPTM_K562_Paclitaxel_30min_R1 1 QDSQRSHLSSFTMKLMDK 18 2 Q13905-3 Q13905-3 3 QDS(1)QRS(1)HLS(0.001)S(0.224)FT(0.775)MKLMDK 69.485 0.013324 4071600 598.42 719.5 655.41 755.56 608.54 521.48 797.7 703.43 534.59 874.67 TRUE FALSE 606.7997263 798.0574432 489.9436395 707.1017634 691.4334507 613.9571561 949.0594107 643.6692308 585.9397581 696.4117739 0.871323187 1.145956276 0.703525784 1.015350099 0.992851466 0.88160077 1.362784844 0.924265291 0.84136969 1 9.443796784 QDSRGS(ph)PLLGPVVPGPSPIPSVTEKR ddPTM_K562_Paclitaxel_30min_R1 1 QDSRGSPLLGPVVPGPSPIPSVTEKR 26 2 P49454 P49454 CENPF Centromere protein F 1 QDS(0.184)RGS(0.816)PLLGPVVPGPSPIPSVTEKR 85.884 3.60E-05 5673100 752.1 741.35 1347.6 1058.7 792.56 565.94 502.36 972.49 879.47 1277.3 TRUE FALSE 762.6317204 822.2931001 1007.381713 990.7997206 900.5200902 666.3015128 597.6801875 889.8709044 963.9470231 1016.985559 0.749894346 0.808559269 0.990556556 0.974251514 0.885479722 0.655173033 0.587697812 0.875008398 0.947847307 1 9.990083478 -5.522180708 24.99801147 0.850825639 0.76456053 0.06207445 0.132643083 80.08569268 2867843.748 0.037673104 0.102396483 3.00E-06 5.522180708 -0.086265109 QEAEDLSLSAPSSPEIS(ph)PQS(ph)SPRPHRPNNDR ddPTM_K562_Paclitaxel_30min_R1 1 QEAEDLSLSAPSSPEISPQSSPRPHRPNNDR 31 2 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 2 QEAEDLS(0.006)LS(0.019)APS(0.025)S(0.06)PEIS(0.667)PQS(0.612)S(0.612)PRPHRPNNDR 52.097 0.011875 19693000 1088.6 1078.8 1103.9 1400 943.06 1011.1 1073.6 1507.2 1012.6 1228.1 TRUE FALSE 1103.843759 1196.587032 825.2067921 1310.210266 1071.520738 1190.404388 1277.309995 1379.153952 1109.864754 977.8125459 1.128890975 1.223738678 0.843931483 1.339940126 1.095834516 1.217415744 1.306293319 1.410448207 1.135048593 1 9.933414106 -6.306159442 24.99924439 1.231038862 1.081341116 0.174652497 0.144800151 718.4549489 401626.3759 0.039931769 0.059228695 4.94E-07 6.306159442 -0.149697746 QEAEDLSLSAPSSPEISPQS(ph)SPRPHRPNNDR ddPTM_K562_Paclitaxel_30min_R1 1 QEAEDLSLSAPSSPEISPQSSPRPHRPNNDR 31 2 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 QEAEDLS(0.004)LS(0.004)APS(0.016)S(0.016)PEIS(0.089)PQS(0.435)S(0.435)PRPHRPNNDR 42.828 0.01348 24189000 2408.3 1831.1 2711.9 1974.7 1713.1 1824.5 2022.1 2061 2066.3 2546.6 TRUE FALSE 2442.02363 2031.02569 2027.247305 1848.05158 1946.453223 2148.049458 2405.782919 1885.905186 2264.777347 2027.601522 1.204390312 1.001688778 0.999825302 0.911447126 0.959978182 1.059404145 1.186516627 0.93011628 1.116973588 1 10.98555844 -7.41073759 11.18080557 1.062591646 1.008100538 0.045671281 0.094910155 1.608304649 151.1538514 0.033876776 0.029865874 3.88E-08 7.41073759 -0.054491108 QEAGDS(ph)PPPAPGTPK ddPTM_K562_Paclitaxel_30min_R1 1 QEAGDSPPPAPGTPK 15 0 J3KR72;P49848-4;P49848-2;P49848;P49848-3 J3KR72 TAF6 Transcription initiation factor TFIID subunit 6 1 QEAGDS(0.98)PPPAPGT(0.02)PK 107.65 0.00087619 0 2620.2 2353.7 5043.8 3317.6 2228.9 2035.9 2220.1 3571.2 1675.1 4159.2 TRUE FALSE 2656.890884 2610.684926 3770.430309 3104.823985 2532.513916 2396.93828 2641.352385 3267.804269 1836.00084 3311.552757 0.802309695 0.788356737 1.138568697 0.937573463 0.764751191 0.72381099 0.797617486 0.986789132 0.554422947 1 11.69329213 -6.755568044 24.80633118 0.799519639 0.923382253 0.118668475 0.148887861 271.4266534 1146766.92 0.04417565 0.055484592 1.76E-07 6.755568044 0.123862614 QEASTGQSPEDHASLAPPLS(ph)PDHSSLEAK ddPTM_K562_Paclitaxel_30min_R1 2 QEASTGQSPEDHASLAPPLSPDHSSLEAK 29 0 P48681 P48681 NES Nestin 1 QEASTGQSPEDHASLAPPLS(0.927)PDHS(0.056)S(0.017)LEAK;QEASTGQSPEDHASLAPPLS(0.678)PDHS(0.231)S(0.091)LEAK 91.064 1.04E-06 84994000 3042.7 2912 5668.7 3668.1 3047.6 2384.86 2788.8 4213 2205.9 4751.8 TRUE FALSE 3085.307188 3229.942008 4237.566575 3432.844484 3462.734716 2807.781436 3317.960241 3855.079353 2417.786551 3783.380552 0.815489519 0.85371851 1.120047671 0.907348451 0.915248855 0.742135611 0.876982951 1.018950989 0.639054549 1 11.88546018 -7.02547444 23.62864306 0.854705038 0.930386052 0.063683246 0.127805344 1092.341796 1013192.176 0.041647502 0.041848198 9.43E-08 7.02547444 0.075681014 QEEAEEQGAGS(ph)PGQPAHLAR ddPTM_K562_Paclitaxel_30min_R1 2 QEEAEEQGAGSPGQPAHLAR 20 0 Q96S99 Q96S99 PLEKHF1 Pleckstrin homology domain-containing family F member 1 1 QEEAEEQGAGS(1)PGQPAHLAR;QEEAEEQGAGS(1)PGQPAHLAR 162.71 1.52E-12 72440000 2488.82 2398.96 3131.49 2691.81 2762.4 2256.1 2523.91 3219 1748.34 3611.1 TRUE FALSE 2523.671159 2660.886566 2340.90662 2519.169355 3138.685648 2656.187658 3002.808747 2945.525858 1916.275869 2875.155838 0.877751086 0.925475597 0.814184257 0.876185326 1.091657574 0.923841283 1.044398605 1.024475202 0.66649461 1 11.48942444 -6.577204707 24.9995694 0.964234653 0.872337965 0.121636688 0.111394104 186.917893 86014.08048 0.032447053 0.041888972 2.65E-07 6.577204707 -0.091896688 QEEEVDYES(ph)EEEEEREGEENDDEDMQEERNPHR ddPTM_K562_Paclitaxel_30min_R1 1 QEEEVDYESEEEEEREGEENDDEDMQEERNPHR 33 2 B9ZVN9;O95602 B9ZVN9 POLR1A DNA-directed RNA polymerase;DNA-directed RNA polymerase I subunit RPA1 1 QEEEVDY(0.176)ES(0.824)EEEEEREGEENDDEDMQEERNPHR 74.65 1.45E-05 24957000 901.76 537.49 669.73 740.73 766.32 543.98 783.92 981.13 830.44 742.21 TRUE FALSE 914.3874222 596.1749759 500.6483784 693.2228932 870.7057579 640.4472151 932.6647277 897.7768825 910.2074725 590.9471946 1.547325092 1.008846444 0.847196472 1.173070791 1.473407042 1.083763864 1.578253922 1.51921676 1.540251787 1 9.206885411 -6.63719043 5.652191975 1.387257905 1.104881121 0.158695711 0.244726505 0.326273601 14.89789549 0.073089629 0.094708693 2.31E-07 6.63719043 -0.282376783 QEEMNS(ph)QQEEEEMETDAR ddPTM_K562_Paclitaxel_30min_R1 2 QEEMNSQQEEEEMETDAR 18 0 E9PPJ0;Q13435;E9PJ04;H0YCG1 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 QEEMNS(1)QQEEEEMETDAR;QEEMNS(1)QQEEEEMETDAR 245.78 1.79E-65 15218700 1642.93 1586.66 2003.97 1651.06 1557.29 1136.66 1453.51 1511.66 1520.23 1760.85 TRUE FALSE 1665.936089 1759.896905 1498.042989 1545.168401 1769.419263 1338.230692 1729.305935 1383.235048 1666.254884 1401.987803 1.188267177 1.255286886 1.068513567 1.10212685 1.262078927 0.954523776 1.233467175 0.986624166 1.188494565 1 10.45325808 -2.000000062 0.071220205 0.886285377 1.692120318 0.18802881 0.099977786 397.5383851 2.092228938 4.06210317 32.03176638 0.009999999 2.000000062 0.805834941 QEKPAEKPAETPVAT(ph)SPTATDSTSGDSSR ddPTM_K562_Paclitaxel_30min_R1 2 QEKPAEKPAETPVATSPTATDSTSGDSSR 29 2 H0Y579;P54727-2;P54727 H0Y579 RAD23B UV excision repair protein RAD23 homolog B 1 QEKPAEKPAET(0.003)PVAT(0.481)S(0.481)PT(0.024)AT(0.01)DSTSGDSSR;QEKPAEKPAETPVAT(0.383)S(0.383)PT(0.145)AT(0.085)DS(0.003)T(0.001)SGDSSR 99.171 2.52E-07 163748000 7042 4781.3 15681 8148.1 5514.6 4095.4 4536 7912.2 5175.1 9502.9 TRUE FALSE 7140.609726 5303.338503 11722.13761 7625.517336 6265.781883 4821.661688 5396.68232 7240.009224 5672.191478 7566.203764 0.943750651 0.700924621 1.549275961 1.007839278 0.828127563 0.637262997 0.713261563 0.956887952 0.749674692 1 12.88535391 -6.739617468 4.711793181 0.796488301 1.065188839 0.216445768 0.220210058 0.294066918 15.97432856 0.069171683 0.086350078 1.82E-07 6.739617468 0.268700538 QEKPAEKPAETPVATS(ph)PTATDSTSGDSSR ddPTM_K562_Paclitaxel_30min_R1 3 QEKPAEKPAETPVATSPTATDSTSGDSSR 29 2 H0Y579;P54727-2;P54727 H0Y579 RAD23B UV excision repair protein RAD23 homolog B 1 QEKPAEKPAET(0.003)PVAT(0.215)S(0.724)PT(0.034)AT(0.018)DS(0.003)T(0.001)S(0.001)GDSSR;QEKPAEKPAETPVAT(0.02)S(0.964)PT(0.014)AT(0.001)DSTSGDSSR;QEKPAEKPAET(0.004)PVAT(0.184)S(0.623)PT(0.134)AT(0.05)DS(0.004)T(0.001)SGDSSR 124.07 5.41E-15 689762000 9673.4 7276.5 21407 10558.5 7114.5 6162.7 6415.5 9951.7 7332.5 13801 TRUE FALSE 9808.857445 8070.972878 16002.53809 9881.325068 8083.615349 7255.568316 7632.807634 9106.240968 8036.819387 10988.34862 0.892659833 0.734502804 1.456318746 0.899254784 0.735653338 0.660296516 0.694627363 0.828717879 0.731394649 1 13.42368697 -6.52428265 18.28152246 0.762299081 1.028376098 0.259643891 0.191174678 2.024756666 26342.02142 0.056600388 0.074267928 2.99E-07 6.52428265 0.266077017 QEKPS(ph)SPSPMPSSTPSPSLNLGNTEEAIR ddPTM_K562_Paclitaxel_30min_R1 1 QEKPSSPSPMPSSTPSPSLNLGNTEEAIR 29 1 O95810 O95810 SDPR Serum deprivation-response protein 1 QEKPS(0.238)S(0.238)PS(0.238)PMPS(0.05)S(0.131)T(0.063)PS(0.038)PS(0.004)LNLGNTEEAIR 43.807 0.029699 19935000 831.61 800.57 1800.2 1220.8 809.36 945.34 900.31 1420.2 543.66 1778.8 TRUE FALSE 843.2551057 887.97894 1345.717245 1142.503352 919.6085346 1112.982776 1071.139123 1299.545145 595.8809721 1416.279584 0.595401583 0.626979976 0.950177677 0.806693371 0.649312851 0.785849622 0.756304853 0.917576699 0.420736823 1 10.46789038 -12.28473369 2.39326073 2.268559935 0.735882222 0.230562148 0.150089597 13014456.2 1014133.777 90774708.33 0.038472065 5.19E-13 12.28473369 -1.532677713 QELGS(ph)PEER ddPTM_K562_Paclitaxel_30min_R1 1 QELGSPEER 9 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF0 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 QELGS(1)PEER 97.957 0.01207 96829000 1662.8 1731.6 2122.6 1946 1468.1 1503.2 1421 1965.9 1350.3 2363.1 TRUE FALSE 1686.08433 1920.661944 1586.723378 1821.19227 1668.080075 1769.771414 1690.627332 1798.884524 1480.002348 1881.498923 0.896138876 1.020814799 0.843329411 0.967947549 0.886569774 0.940617819 0.898553441 0.956091179 0.786608129 1 10.87766675 -5.758073114 24.99998439 0.910318992 0.958476797 0.081117202 0.065301866 208.847832 1550960.867 0.015356273 0.037296687 1.75E-06 5.758073114 0.048157805 QELSHALYQHDAACR ddPTM_K562_Paclitaxel_30min_R1 2 QELSHALYQHDAACR 15 0 F5H2I0;F5GY56;Q9UMS4 F5H2I0 PRPF19 Pre-mRNA-processing factor 19 0 ; 105.63 0.0022088 34984000 2500.3 2531.7 3672.1 2584.9 2265.8 2582.7 2338.8 3152.9 2581.8 3658.6 FALSE TRUE 2535.311914 2808.119568 2745.032939 2419.116084 2574.44032 3040.705582 2782.575091 2885.041465 2829.793426 2912.975312 0.870351322 0.964003902 0.942346792 0.830462268 0.883783776 1.043848731 0.955234697 0.990410545 0.971444356 1 11.50827776 -7.245590249 24.94538702 0.989278766 0.900536504 0.572391754 0.040558086 663.7693816 1044726.086 0.014049601 0.014004255 5.68E-08 7.245590249 -0.088742262 QEMQEVQSSR ddPTM_K562_Paclitaxel_30min_R1 2 QEMQEVQSSR 10 0 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ; 119.34 0.0089868 43941500 1678.55 1601.73 2338.47 2177.53 1691.81 1747.04 1704.55 2379.24 2051.66 2322.57 FALSE TRUE 1702.054879 1776.612298 1748.094327 2037.872972 1922.263165 2056.853014 2027.979464 2177.108711 2248.73111 1849.228959 0.920413273 0.960731384 0.945309837 1.102012253 1.039494409 1.112276013 1.096662181 1.177306196 1.216037148 1 10.85270815 -6.331826961 0.786887812 1.135783347 0.904159402 0.605507339 0.059709439 0.559322108 0.63410185 0.028323939 0.088375858 4.66E-07 6.331826961 -0.231623945 QENCGAQQVPAGPGTST(ph)PPS(ph)SPVR ddPTM_K562_Paclitaxel_30min_R1 2 QENCGAQQVPAGPGTSTPPSSPVR 24 0 Q96G46-2;Q96G46 Q96G46-2 DUS3L tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 2 QENCGAQQVPAGPGT(0.02)S(0.438)T(0.552)PPS(0.662)S(0.328)PVR;QENCGAQQVPAGPGT(0.006)S(0.13)T(0.868)PPS(0.557)S(0.44)PVR 153.41 2.86E-25 113113000 2868 2803.2 4071.9 3548.7 2785.7 2473 3229.4 3471.8 1870.85 3957.7 TRUE FALSE 2908.160849 3109.262856 3043.898484 3321.102265 3165.159502 2911.551827 3842.161791 3176.84892 2050.553502 3151.118568 0.922897944 0.986717189 0.965973961 1.053943923 1.004455857 0.923974063 1.219300927 1.008165466 0.650738288 1 11.62164832 -8.634641846 13.43007038 0.82550549 1.014073531 0.3063283 0.111483639 0.618287955 71.17090923 0.072057745 0.027219197 2.32E-09 8.634641846 0.188568041 QEPCAQHNGSEPAS(ph)PKR ddPTM_K562_Paclitaxel_30min_R1 1 QEPCAQHNGSEPASPKR 17 1 M0QZ09;Q8N6T7-2;Q8N6T7 M0QZ09 SIRT6 NAD-dependent protein deacetylase sirtuin-6 1 QEPCAQHNGSEPAS(1)PKR 87.793 0.0049322 1797500 571.29 506.69 1194.3 826.95 510.86 605.46 414.2 642.73 419.74 1151.7 TRUE FALSE 579.2898226 562.0121277 892.7841941 773.9131283 580.4477809 712.8298299 492.7922877 588.1260747 460.0579024 916.9829078 0.631734591 0.612892697 0.973610507 0.843977703 0.632997383 0.777364359 0.537406187 0.641370815 0.501708264 1 9.840751033 -6.777299125 24.9112825 0.661434108 0.769510707 0.051892285 0.161519871 593.7038629 932541.2821 0.050154283 0.057054025 1.67E-07 6.777299125 0.108076599 QEPIES(ph)DEEEAEPPREVEPGQR ddPTM_K562_Paclitaxel_30min_R1 1 QEPIESDEEEAEPPREVEPGQR 22 1 P56524-2;P56524 P56524-2 HDAC4 Histone deacetylase 4 1 QEPIES(1)DEEEAEPPREVEPGQR 68.024 0.005466 71204000 784.95 627.9 833.2 686.27 575.94 601.79 459.94 645.46 507.41 742.31 TRUE FALSE 795.9417218 696.4562454 622.8483551 642.2557138 654.3927787 708.5090069 547.211214 590.6241442 556.1489977 591.0268145 1.346710001 1.178383498 1.053841111 1.086677792 1.107213349 1.198776417 0.925865292 0.999318694 0.940987759 1 9.207079776 -2 0.349228402 0.989265599 4.823097046 0.65938701 0.072010248 41.58835858 0.586527226 0.065838487 104.8985898 0.01 2 3.833831447 QEPLGS(ph)DSEGVNCLAYDEAIMAQQDR ddPTM_K562_Paclitaxel_30min_R1 1 QEPLGSDSEGVNCLAYDEAIMAQQDR 26 0 F5H3F0;J3KR44;F5H6Q1;F5GYJ8;Q96FW1 F5H3F0 OTUB1 Ubiquitin thioesterase OTUB1 1 QEPLGS(0.556)DS(0.443)EGVNCLAYDEAIMAQQDR 65.275 0.0077528 0 0 66.528 220.34 220.5 68.589 0 0 0 0 170.99 TRUE FALSE 0 73.79175202 164.7124419 206.3581169 77.93198302 0 0 0 0 136.1421441 0 0.542019905 1.209856381 1.515754862 0.572430995 0 0 0 0 1 7.088969926 -5.260356088 24.99791892 0.525569654 7.23E-05 0.085177323 0.527367014 301.1371128 6948105.476 0.150549928 0.897131427 5.49E-06 5.260356088 -0.525497386 QEQINTEPLEDTVLS(ph)PTK ddPTM_K562_Paclitaxel_30min_R1 2 QEQINTEPLEDTVLSPTK 18 0 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 QEQINTEPLEDTVLS(0.851)PT(0.149)K;QEQINTEPLEDT(0.001)VLS(0.954)PT(0.045)K 238.63 9.36E-53 41875000 5271.6 4364.6 9782.4 6255.3 4354.6 3521.7 4019.5 6133.2 3685.8 7367.3 TRUE FALSE 5345.418664 4841.141788 7312.712133 5854.113056 4947.770244 4146.224048 4782.179142 5612.146378 4039.837559 5865.840216 0.911279283 0.825310886 1.246660643 0.998000771 0.843488752 0.70684231 0.815259019 0.956750639 0.688705694 1 12.51812206 -6.777956446 5.8680617 0.824606102 1.001782421 0.2529287 0.134188303 0.225662556 25.50471379 0.041952553 0.049850009 1.67E-07 6.777956446 0.177176319 QERLS(ph)PEVAPPAHR ddPTM_K562_Paclitaxel_30min_R1 1 QERLSPEVAPPAHR 14 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 QERLS(1)PEVAPPAHR 74.812 0.029555 69722000 1389.3 1157.5 1372.1 1408 1317.6 1259.6 1164 1528.2 906.77 1776.1 TRUE FALSE 1408.754486 1283.879764 1025.696385 1317.697182 1497.079427 1482.972374 1384.862924 1398.369871 993.8693101 1414.129845 0.996198822 0.907893832 0.725319806 0.931807773 1.058657684 1.048681901 0.979303936 0.988855356 0.702813333 1 10.46569888 -5.247449361 21.66365885 0.930082108 0.99619911 0.03022768 0.116377481 1827.487916 2829550.787 0.030487527 0.50447347 5.66E-06 5.247449361 0.066117003 QES(ph)FEAEKDHITPSLLHNGFR ddPTM_K562_Paclitaxel_30min_R1 1 QESFEAEKDHITPSLLHNGFR 21 1 Q92610;H0YM74 Q92610 ZNF592 Zinc finger protein 592 1 QES(0.996)FEAEKDHIT(0.004)PSLLHNGFR 55.031 0.022771 7188400 1823.5 1852.1 3571 2205.8 1572.3 1500.9 1356.4 2200 1281 2659.4 TRUE FALSE 1849.034626 2054.318541 2669.456884 2064.329861 1786.473879 1767.063541 1613.769819 2013.096268 1404.045774 2117.41282 0.873251833 0.970202183 1.260716313 0.974930274 0.84370599 0.834538983 0.762142273 0.950733956 0.663094962 1 11.04808686 -6.677301791 4.162295135 0.834959191 1.040419652 0.327912007 0.125608689 0.241705975 7.851529014 0.037819804 0.048880194 2.10E-07 6.677301791 0.205460461 QESKEGAFIVRDS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 QESKEGAFIVRDSR 14 2 P42681 P42681 TXK Tyrosine-protein kinase TXK 1 QESKEGAFIVRDS(1)R 58.98 0.027501 7657800 398.6 432.73 281.25 396.48 396.13 433.85 408.5 443.04 293.23 524.57 TRUE FALSE 404.1816298 479.9769248 210.244959 371.0515474 450.0896125 510.7872059 486.0107425 405.4009866 321.3960517 417.6623461 0.96772341 1.14919846 0.503384998 0.888400764 1.077639909 1.222966855 1.1636451 0.97064289 0.769511675 1 8.706193274 -6.72577204 7.540637965 1.048511731 0.869018512 0.140356249 0.187888853 0.412791176 69.93242366 0.059377107 0.075799234 1.88E-07 6.72577204 -0.179493219 QEYDESGPSIVHR ddPTM_K562_Paclitaxel_30min_R1 4 QEYDESGPSIVHR 13 0 P60709;P63261;A5A3E0;Q6S8J3;P0CG38;A0A2R8YFE2;Q9BYX7;P0CG39 P60709 ACTB;ACTG1;POTEF;POTEE;POTEI;POTEKP;POTEJ "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member F;POTE ankyrin domain family member E;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;POTE ankyrin domain family member J" 0 ;;; 222.56 1.04E-22 234134000 18470.2 18047.2 22898.8 20755.2 18077.7 17139.1 18462.5 22310.3 13434.3 24274.7 FALSE TRUE 18728.83979 20017.65433 17117.71473 19424.05437 20540.1888 20178.47874 21965.66299 20414.90076 14724.72454 19327.50282 0.96902533 1.035708261 0.885666136 1.004995552 1.062744059 1.044029274 1.136497726 1.056261689 0.761853442 1 14.23836763 -4.957346556 15.58708178 1.004653066 0.804421236 0.004660289 0.099532534 118531278.5 1223225387 0.025131548 680530240.7 1.10E-05 4.957346556 -0.20023183 QEYDESGPSIVHRK ddPTM_K562_Paclitaxel_30min_R1 2 QEYDESGPSIVHRK 14 1 P60709;P63261;A5A3E0;Q6S8J3;P0CG38;A0A2R8YFE2;Q9BYX7;P0CG39 P60709 ACTB;ACTG1;POTEF;POTEE;POTEI;POTEKP;POTEJ "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;POTE ankyrin domain family member F;POTE ankyrin domain family member E;POTE ankyrin domain family member I;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;POTE ankyrin domain family member J" 0 ; 67.019 0.026485 50084000 11706.7 9825 19081.9 12952.8 10915.4 9818.7 7940 11367.6 10273.3 13600.6 FALSE TRUE 11870.62992 10897.72673 14264.43834 12122.06538 12402.26228 11559.90858 9446.57355 10401.85143 11260.09637 10828.79025 1.096210162 1.006366036 1.317269797 1.119429327 1.145304507 1.067516159 0.872357237 0.960573728 1.039829575 1 13.40258446 -7.546482603 5.904404316 0.964511731 1.136064114 0.484739087 0.081932165 0.151064048 16.92458364 0.032111483 0.025280696 2.84E-08 7.546482603 0.171552383 QFCQEGQPHVLEALS(ph)PPQT(ph)SGLSPSR ddPTM_K562_Paclitaxel_30min_R1 2 QFCQEGQPHVLEALSPPQTSGLSPSR 26 0 E9PR76;E9PSH4;Q9H063 E9PR76 MAF1 Repressor of RNA polymerase III transcription MAF1 homolog 2 QFCQEGQPHVLEALS(0.943)PPQT(0.303)S(0.303)GLS(0.303)PS(0.147)R;QFCQEGQPHVLEALS(0.999)PPQT(0.354)S(0.302)GLS(0.318)PS(0.026)R 70.083 0.0016692 59425000 5388.3 5191.7 5753.2 4405.71 4560.98 3813.93 4308.5 5345.8 5643.2 6058.1 TRUE FALSE 5463.752824 5758.547363 4300.733505 4123.14748 5182.262694 4490.276935 5126.015383 4891.640923 6185.254574 4823.455895 1.132746509 1.193863381 0.891629072 0.854811896 1.074387909 0.930925261 1.062726704 1.014136136 1.28232842 1 12.23585146 -8.633752228 23.3544578 1.143561218 1.015779628 0.144777961 0.118079767 9.870641186 2042.88211 0.081488293 0.030799669 2.32E-09 8.633752228 -0.12778159 QFCQEGQPHVLEALS(ph)PPQTSGLSPSR ddPTM_K562_Paclitaxel_30min_R1 1 QFCQEGQPHVLEALSPPQTSGLSPSR 26 0 E9PR76;E9PSH4;Q9H063 E9PR76 MAF1 Repressor of RNA polymerase III transcription MAF1 homolog 1 QFCQEGQPHVLEALS(0.973)PPQT(0.01)S(0.01)GLS(0.001)PS(0.005)R 131.56 2.47E-14 176550000 1322.8 1453.3 1984.1 1542.2 1311.4 1241.6 1508.6 1888.8 1682.9 1785.9 TRUE FALSE 1341.323281 1611.976209 1483.189416 1443.290195 1490.034882 1461.780327 1794.848975 1728.33465 1844.550064 1421.9326 0.943310029 1.13365163 1.043079972 1.015020118 1.047894171 1.02802364 1.262260233 1.215482823 1.29721343 1 10.47363737 -7.753439145 24.99828919 1.211696028 1.039662911 0.444562866 0.085813436 144.0656402 450162.4695 0.031040902 0.023606116 1.76E-08 7.753439145 -0.172033117 QFCQEGQPHVLEALSPPQT(ph)SGLSPSR ddPTM_K562_Paclitaxel_30min_R1 1 QFCQEGQPHVLEALSPPQTSGLSPSR 26 0 E9PR76;E9PSH4;Q9H063 E9PR76 MAF1 Repressor of RNA polymerase III transcription MAF1 homolog 1 QFCQEGQPHVLEALS(0.145)PPQT(0.423)S(0.423)GLS(0.006)PS(0.004)R 169.36 8.91E-27 174740000 1306.4 1562.7 1686.8 1543.6 1399.9 1366 1677.1 1595.8 1414.8 2046.7 TRUE FALSE 1324.693631 1733.320871 1260.946478 1444.600405 1590.590081 1608.24092 1995.32097 1460.226829 1550.697861 1629.581417 0.812904232 1.063660185 0.773785504 0.886485566 0.97607279 0.986904308 1.22443773 0.896074792 0.95159275 1 10.67028572 -6.919395361 3.036897636 1.016682794 0.889152322 0.243294974 0.106201366 0.398162049 7.420640642 0.035684373 0.040706954 1.20E-07 6.919395361 -0.127530471 QFCQEGQPHVLEALSPPQTSGLS(ph)PSR ddPTM_K562_Paclitaxel_30min_R1 2 QFCQEGQPHVLEALSPPQTSGLSPSR 26 0 E9PR76;E9PSH4;Q9H063 E9PR76 MAF1 Repressor of RNA polymerase III transcription MAF1 homolog 1 QFCQEGQPHVLEALS(0.02)PPQT(0.172)S(0.172)GLS(0.363)PS(0.272)R;QFCQEGQPHVLEALSPPQT(0.056)S(0.056)GLS(0.783)PS(0.106)R 129.93 7.75E-12 33248000 3869.3 3057.5 4351 3744.3 3625.6 3417.5 3818.2 4449 3225.8 5018.1 TRUE FALSE 3923.482138 3391.32819 3252.536238 3504.157357 4119.468102 4023.545641 4542.683518 4071.02968 3535.652503 3995.408466 0.981997754 0.848806378 0.814068515 0.877046086 1.031050552 1.007042378 1.136975996 1.01892703 0.884928921 1 11.96412729 -6.757864924 24.35731845 1.019986014 0.873473605 0.46248877 0.06967445 57.76477718 393620.1516 0.021683887 0.026863899 1.75E-07 6.757864924 -0.146512409 QFKDLFDLNS(ph)SEEDDTEGFSER ddPTM_K562_Paclitaxel_30min_R1 1 QFKDLFDLNSSEEDDTEGFSER 22 1 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 QFKDLFDLNS(0.821)S(0.178)EEDDTEGFSER 71.882 0.0027904 9521800 1122.4 1094.6 1884.4 1353.3 830.69 900.06 690.68 1161.5 1638.9 1385.2 TRUE FALSE 1138.117063 1214.11213 1408.659914 1266.505395 943.8440417 1059.673004 821.7329244 1062.823325 1796.323668 1102.89548 1.031935559 1.100840607 1.277237907 1.148345803 0.855787388 0.960809998 0.745068721 0.963666408 1.628734274 1 10.10708036 -6.634981465 22.07677758 1.006156987 1.146719163 0.052739789 0.226847953 10.73039504 2057.274906 0.069046898 0.089139143 2.32E-07 6.634981465 0.140562176 QFKIFS(ph)DFR ddPTM_K562_Paclitaxel_30min_R1 2 QFKIFSDFR 9 1 M9MMK7;Q0VDD8-2;Q0VDD8-4 M9MMK7 DNAH14 1 QFKIFS(1)DFR;QFKIFS(1)DFR 112.41 0.003609 107026000 5439 5847.8 5822.5 5328.6 4458.6 4895.6 6265.6 7390.2 5552.8 7933.1 TRUE FALSE 5515.162781 6486.28258 4352.537863 4986.847446 5065.936805 5763.765922 7454.464891 6762.356382 6086.171251 6316.329865 0.873159398 1.026906878 0.689092868 0.789516626 0.802038037 0.912518194 1.180189295 1.070614823 0.963561337 1 12.6248708 -7.56505952 6.793936603 1.059020906 0.837857507 0.538470692 0.094979534 0.160388459 19.21358279 0.038189919 0.029654448 2.72E-08 7.56505952 -0.221163399 QFS(ph)RIEEVFK ddPTM_K562_Paclitaxel_30min_R1 1 QFSRIEEVFK 10 1 A0A1B0GVK0;Q14314 A0A1B0GVK0 FGL2 Fibroleukin 1 QFS(1)RIEEVFK 77.674 0.028853 13512000 3991.5 4265.3 5572.7 5184.4 4087.5 4681.1 4269.8 5237.4 2494.4 5446.2 TRUE FALSE 4047.393315 4730.999878 4165.802963 4851.895789 4644.286702 5511.227359 5079.97226 4792.450179 2733.998265 4336.261451 0.933383137 1.091031971 0.960689988 1.118912188 1.071034751 1.270962884 1.171509679 1.105203234 0.630496638 1 12.08223603 -8.735976602 24.95642855 0.81524833 1.095077582 0.445448945 0.122684183 165.7673616 162471.8206 0.082174085 0.031033368 1.84E-09 8.735976602 0.279829252 QFVPMSDMKWYK ddPTM_K562_Paclitaxel_30min_R1 1 QFVPMSDMKWYK 12 1 A0A0A0MRA3;A0A0A0MTS7;Q8WZ42-3;Q8WZ42-10;Q8WZ42-9;Q8WZ42-5;Q8WZ42-11;Q8WZ42-4;Q8WZ42-7;Q8WZ42-2;Q8WZ42;Q8WZ42-8;Q8WZ42-13;Q8WZ42-12 A0A0A0MRA3 TTN Titin 0 48.741 0.031017 430770000 3033.1 3041.8 4689.8 3404.6 2638.6 2514.5 2611.6 3292.7 2351 4261.6 FALSE TRUE 3075.572758 3373.914011 3505.801987 3186.244194 2998.021992 2960.41127 3107.137467 3012.964583 2576.824055 3393.083581 0.906424108 0.994350399 1.03322005 0.939040881 0.883568565 0.87248404 0.91572677 0.887972404 0.7594343 1 11.72838125 -6.609682243 3.705730501 0.881730104 0.980679172 0.302665525 0.062321831 0.261035037 6.98797074 0.018567826 0.02477021 2.46E-07 6.609682243 0.098949068 QGADREESPMTGVCVQQS(ph)PVASS ddPTM_K562_Paclitaxel_30min_R1 1 QGADREESPMTGVCVQQSPVASS 23 1 A0A2R8Y6I6;Q13627-2;Q13627 A0A2R8Y6I6 DYRK1A Dual specificity tyrosine-phosphorylation-regulated kinase 1A 1 QGADREESPMTGVCVQQS(0.946)PVAS(0.01)S(0.043) 54.658 0.019168 7874800 647.79 694.64 752.53 698.2 595.89 548.18 555.11 616.84 701.63 840.82 TRUE FALSE 656.8610586 770.4831443 562.5444943 653.420577 677.0603065 645.3920262 660.4392246 564.4355918 769.0246965 669.4604225 0.981179823 1.150901709 0.840295371 0.976040637 1.011352253 0.964048067 0.986524673 0.84312018 1.148723167 1 9.386854958 -5.745443274 24.99999816 0.967549932 1.066040678 0.147670006 0.090729868 419.9638882 656342.9018 0.021524926 0.05656165 1.80E-06 5.745443274 0.098490745 QGAIYHGLATLLNQPS(ph)PMMQR ddPTM_K562_Paclitaxel_30min_R1 6 QGAIYHGLATLLNQPSPMMQR 21 0 A8MQ02;J3KN01;P55196;P55196-5;P55196-3;P55196-1;Q5TIG5;P55196-2;P55196-6 A8MQ02 MLLT4 Afadin 1 QGAIYHGLATLLNQPS(1)PMMQR;QGAIYHGLATLLNQPS(1)PMMQR;QGAIYHGLATLLNQPS(1)PMMQR;QGAIYHGLATLLNQPS(1)PMMQR;QGAIYHGLATLLNQPS(1)PMMQR;QGAIYHGLATLLNQPS(1)PMMQR 158.29 7.77E-18 541938000 15452.4 14470.2 14770.3 13948.2 12743.7 12053 16025.3 19838.1 15948.6 22683.4 TRUE FALSE 15668.78127 16050.10537 11041.35509 13053.62488 14479.60769 14190.43032 19066.01702 18152.72958 17480.53429 18060.51063 0.867571333 0.888685027 0.611353428 0.72277164 0.801727481 0.785715897 1.055674306 1.00510611 0.967887046 1 14.14055106 -7.752293257 24.41988427 1.007592373 0.77536412 0.690030409 0.074675082 88.20193969 235497.2026 0.031215774 0.023815501 1.77E-08 7.752293257 -0.232228253 QGAPPAAGQGGALVELTPTPGGLALVS(ph)PYHTHR ddPTM_K562_Paclitaxel_30min_R1 1 QGAPPAAGQGGALVELTPTPGGLALVSPYHTHR 33 0 Q9BV19 Q9BV19 C1orf50 Uncharacterized protein C1orf50 1 QGAPPAAGQGGALVELT(0.012)PT(0.319)PGGLALVS(0.644)PY(0.019)HT(0.006)HR 92.731 3.22E-10 9857000 438.7 545.25 501.19 558.29 508.78 508.65 625.92 564.67 471.35 692.57 TRUE FALSE 444.8431535 604.7822389 374.6583859 522.4837782 578.0844497 598.8519357 744.6850525 516.6977589 516.6252735 551.4238538 0.806717284 1.096764739 0.679438119 0.947517549 1.048348644 1.086010211 1.350476675 0.937024678 0.936893226 1 9.107017867 -6.683358785 3.645376882 1.073894213 0.875572054 0.268967931 0.145984462 0.319809239 8.354895088 0.045963715 0.059462224 2.07E-07 6.683358785 -0.198322159 QGGSQPSSFS(ph)PGQSQVTPQDQEK ddPTM_K562_Paclitaxel_30min_R1 1 QGGSQPSSFSPGQSQVTPQDQEK 23 0 Q9H0L4 Q9H0L4 CSTF2T Cleavage stimulation factor subunit 2 tau variant 1 QGGSQPSS(0.001)FS(0.997)PGQS(0.002)QVTPQDQEK 148.19 7.07E-19 9159700 780.72 1012.6 1506.4 859.32 775.83 707.49 668.39 1210.9 758.48 1423.8 TRUE FALSE 791.6524887 1123.159092 1126.090689 804.2070614 881.5111809 832.9534178 795.2135133 1108.026487 831.335393 1133.628778 0.698334855 0.990764449 0.993350478 0.709409532 0.777601273 0.734767354 0.701476117 0.97741563 0.733340057 1 10.14673257 -6.26252926 24.99986002 0.795553763 0.903811376 0.091825598 0.125231769 200.2944409 4594433.3 0.033963515 0.053802736 5.46E-07 6.26252926 0.108257613 QGGYSQSNYNS(ph)PGSGQNYSGPPSSYQSSQGGYGR ddPTM_K562_Paclitaxel_30min_R1 4 QGGYSQSNYNSPGSGQNYSGPPSSYQSSQGGYGR 34 0 Q12906;Q12906-7;K7ELV3 Q12906 ILF3 Interleukin enhancer-binding factor 3 1 QGGYSQS(0.001)NY(0.003)NS(0.545)PGS(0.126)GQNY(0.262)S(0.064)GPPSSYQSSQGGYGR;QGGYSQS(0.001)NY(0.004)NS(0.819)PGS(0.175)GQNY(0.001)SGPPSSYQSSQGGYGR;QGGYS(0.002)QS(0.017)NY(0.035)NS(0.447)PGS(0.447)GQNY(0.047)S(0.005)GPPSSYQSSQGGYGR;QGGYSQSNY(0.005)NS(0.849)PGS(0.144)GQNY(0.002)SGPPSSYQSSQGGYGR 158.15 1.81E-46 82224000 3923.03 4293.8 5198.7 4775.3 4034.62 4011.17 3818.57 4331 4158.65 5045.4 TRUE FALSE 3977.964524 4762.611605 3886.223888 4469.033631 4584.203551 4722.49468 4543.123723 3963.054517 4558.106914 4017.144711 0.990246757 1.185571332 0.967409483 1.112490078 1.141159675 1.175584904 1.130933549 0.986535164 1.13466336 1 11.97195472 -10.01693394 0.792363846 0.997810989 1.09559563 0.106982491 0.077043352 13.41473682 8.504332232 0.178808623 0.025842003 9.62E-11 10.01693394 0.097784641 QGLAET(ph)ASPVAVSLR ddPTM_K562_Paclitaxel_30min_R1 1 QGLAETASPVAVSLR 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 QGLAET(0.635)AS(0.358)PVAVS(0.007)LR 107.69 0.0058423 22290000 1094.4 930.49 1717.2 1263.5 1007.3 1044 803.31 1165.3 948.44 1220.8 TRUE FALSE 1109.724977 1032.084045 1283.671622 1182.464765 1144.511314 1229.138742 955.7338789 1066.300491 1039.5419 972.0002899 1.141692022 1.061814544 1.320649423 1.216527173 1.177480424 1.264545653 0.983265014 1.097016639 1.069487232 1 9.924812934 -7.762753643 24.99999973 1.045526937 1.196572697 0.543746726 0.071501243 30.4953558 580059.9163 0.029855234 0.021376516 1.73E-08 7.762753643 0.15104576 QGLAETAS(ph)PVAVSLR ddPTM_K562_Paclitaxel_30min_R1 1 QGLAETASPVAVSLR 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 QGLAET(0.001)AS(0.993)PVAVS(0.006)LR 210.39 9.25E-14 103010000 1619.3 1632.5 2681.7 2014.9 1622.2 1461.4 1725.4 1874.7 1320.5 2053.3 TRUE FALSE 1641.975196 1810.741871 2004.671668 1885.673332 1843.171104 1720.558771 2052.785643 1715.432533 1447.339925 1634.836333 1.004366714 1.107598256 1.226221627 1.153432484 1.127434635 1.052434875 1.255652081 1.049299247 0.885311817 1 10.6749305 -8.535272533 7.31402112 0.949194547 1.134112142 0.512758218 0.07386676 0.116277224 34.04503335 0.048010464 0.018844408 2.92E-09 8.535272533 0.184917596 QGLAETASPVAVSLRS(ph)DGSENLCTPQQSR ddPTM_K562_Paclitaxel_30min_R1 1 QGLAETASPVAVSLRSDGSENLCTPQQSR 29 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 QGLAET(0.001)AS(0.009)PVAVS(0.065)LRS(0.763)DGS(0.143)ENLCT(0.017)PQQS(0.001)R 55.406 0.0036429 21499000 309.62 275.15 407.78 405.38 391.16 354.85 260.15 415.07 261.56 515.44 TRUE FALSE 313.9556353 305.1918075 304.8308956 379.3807412 444.4426144 417.7776652 309.5121044 379.8072127 286.6840067 410.3930451 0.765012076 0.743657358 0.742777928 0.924432677 1.082968193 1.017994019 0.754184575 0.925471855 0.698559613 1 8.680862472 -6.261208374 24.99985785 0.916310459 0.749799996 0.322122571 0.109218529 26.04459987 2818447.92 0.031844213 0.050993875 5.48E-07 6.261208374 -0.166510463 QGMSMRES(ph)PVSAPLEGLICR ddPTM_K562_Paclitaxel_30min_R1 2 QGMSMRESPVSAPLEGLICR 20 1 O75376-2;O75376;A0A088AWL3 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 QGMS(0.496)MRES(0.503)PVS(0.001)APLEGLICR;QGMS(0.003)MRES(0.557)PVS(0.439)APLEGLICR 80.453 0.0029018 28822000 1466 1243.81 1531.45 1439.51 1129.44 1173.59 1283.52 1407.4 1524.59 2105.88 TRUE FALSE 1486.528523 1379.613382 1144.816507 1347.186272 1283.28885 1381.709708 1527.06122 1287.832585 1671.033682 1676.7005 0.886579638 0.822814439 0.682779367 0.803474605 0.765365579 0.824064708 0.910753721 0.768075506 0.996620256 1 10.7114093 -8.766468975 0.886304861 1.009358861 0.79350593 0.510400358 0.067942347 0.458711782 0.777056051 0.064395149 0.023615782 1.71E-09 8.766468975 -0.215852931 QGPPCS(ph)DS(ph)EEEVER ddPTM_K562_Paclitaxel_30min_R1 2 QGPPCSDSEEEVER 14 0 E9PPY3;O43159 E9PPY3 RRP8 Ribosomal RNA-processing protein 8 2 QGPPCS(1)DS(1)EEEVER;QGPPCS(1)DS(1)EEEVER 114.28 0.015296 116566000 7075.6 6519 8395.6 7063.6 6307.6 5991.4 6363.1 7659.5 6767.8 7836.1 TRUE FALSE 7174.68023 7230.766466 6276.026945 6610.572312 7166.801909 7053.890667 7570.465007 7008.777666 7417.877429 6239.098519 1.14995463 1.158944108 1.005918872 1.059539658 1.148691896 1.130594531 1.213390842 1.123363839 1.188934172 1 12.60712188 -6.782301586 24.85311877 1.144113769 1.09199534 0.069920632 0.066719711 490.6779273 584541.3702 0.020606911 0.023392345 1.65E-07 6.782301586 -0.052118429 QGPT(ph)PT(ph)ATS(ph)NPIQDGLR ddPTM_K562_Paclitaxel_30min_R1 1 QGPTPTATSNPIQDGLR 17 0 Q702N8-2;Q702N8 Q702N8-2 XIRP1 Xin actin-binding repeat-containing protein 1 3 QGPT(0.997)PT(0.993)AT(0.025)S(0.985)NPIQDGLR 60.561 0.026745 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 QGPVSQSATQQPVT(ph)ADKQQGHEPVSPR ddPTM_K562_Paclitaxel_30min_R1 2 QGPVSQSATQQPVTADKQQGHEPVSPR 27 1 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 QGPVSQSAT(0.004)QQPVT(0.705)ADKQQGHEPVS(0.29)PR;QGPVSQSAT(0.003)QQPVT(0.924)ADKQQGHEPVS(0.073)PR 71.857 0.0021206 16857200 1133.79 1040.66 1765.15 1376.33 999.94 1018.26 596.81 1106.98 1189.21 1351.15 TRUE FALSE 1149.666558 1154.282778 1319.516051 1288.058354 1136.148757 1198.834114 710.0515819 1012.935139 1303.438934 1075.784888 1.068676992 1.072968017 1.226561244 1.19731962 1.056111467 1.114380883 0.660031192 0.941577773 1.211616698 1 10.07117391 -7.569048202 24.99989432 0.939690316 1.126613829 0.272467516 0.134902903 162.5604329 88022.07208 0.052939331 0.041006641 2.70E-08 7.569048202 0.186923513 QGPVSQSATQQPVTADKQQGHEPVS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 QGPVSQSATQQPVTADKQQGHEPVSPR 27 1 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 QGPVSQSATQQPVT(0.012)ADKQQGHEPVS(0.988)PR;QGPVSQSAT(0.001)QQPVT(0.058)ADKQQGHEPVS(0.939)PR 73.269 0.00011688 986620000 6380.8 4752.8 9790.5 7122.2 5341.7 4726.1 4646.5 6699.4 6517.3 7424.8 TRUE FALSE 6470.150886 5271.726777 7318.767188 6665.41397 6069.329976 5564.207477 5528.149119 6130.244154 7143.315785 5911.621684 1.094479862 0.891756452 1.238030371 1.127510238 1.02667767 0.941231996 0.935132425 1.03698181 1.208351306 1 12.52933823 -6.893994995 7.970501625 1.017051686 1.084422432 0.076191129 0.106030247 0.700986831 47.72421732 0.034609229 0.039310607 1.28E-07 6.893994995 0.067370746 QGQSQAASSSSVT(ph)SPIK ddPTM_K562_Paclitaxel_30min_R1 2 QGQSQAASSSSVTSPIK 17 0 O60583-2;O60583 O60583-2 CCNT2 Cyclin-T2 1 QGQSQAASSSSVT(0.5)S(0.5)PIK;QGQSQAASSSSVT(0.5)S(0.5)PIK 274.16 1.52E-112 39986000 9031.8 7495.8 15173.1 9891.5 7259.5 6958.6 6754.4 10570.6 5656.1 12122.3 TRUE FALSE 9158.273065 8314.216793 11342.46325 9257.103463 8248.366804 8192.610006 8036.01214 9672.56155 6199.393677 9651.768606 0.948869937 0.861418993 1.175169413 0.959109552 0.85459641 0.848819563 0.832594778 1.002154314 0.642306496 1 13.23657761 -6.680900817 4.87773905 0.861264887 0.994144119 0.206999426 0.118671803 0.326089686 13.80521193 0.034587806 0.044589307 2.08E-07 6.680900817 0.132879232 QGS(ph)FTIEKPSPNIPIELIPHINK ddPTM_K562_Paclitaxel_30min_R1 2 QGSFTIEKPSPNIPIELIPHINK 23 1 H0Y2V6;Q5SW79-2;Q5SW79-3;Q5SW79 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 QGS(0.796)FT(0.18)IEKPS(0.024)PNIPIELIPHINK;QGS(0.499)FT(0.499)IEKPS(0.002)PNIPIELIPHINK 85.166 0.00029554 26746400 1695.52 1459.78 4279.3 1886.14 1257.31 918.8 1186.63 2102 1770.31 2798.4 TRUE FALSE 1719.262511 1619.163717 3198.937789 1765.171422 1428.576908 1081.736279 1411.786848 1923.42198 1940.356185 2228.084544 0.771632529 0.726706588 1.435734473 0.792237183 0.641168178 0.485500554 0.633632531 0.863262566 0.870862908 1 11.12158826 -6.505597259 24.92198449 0.722685472 0.979741573 0.167626598 0.224659654 1163.789454 1678325.192 0.066076805 0.095519887 3.12E-07 6.505597259 0.257056101 QGS(ph)GSSQPMEVQEGYGFGSGDDPYSSAEPHVSGVKR ddPTM_K562_Paclitaxel_30min_R1 1 QGSGSSQPMEVQEGYGFGSGDDPYSSAEPHVSGVKR 36 1 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 QGS(0.333)GS(0.333)S(0.333)QPMEVQEGYGFGSGDDPYSSAEPHVSGVKR 53.665 0.00065909 35160000 1370.8 1289.6 2399.2 1401.2 1054.3 1271.6 1044.5 1300.6 1504.9 2048.7 TRUE FALSE 1389.995429 1430.402889 1793.492287 1311.333304 1197.913509 1497.100406 1242.688422 1190.105912 1649.452369 1631.173815 0.852144276 0.876916289 1.099510224 0.803920031 0.734387407 0.917805565 0.761836912 0.729600917 1.011205767 1 10.67169481 -5.245318359 20.14289369 0.870394072 0.852144061 0 0.120803233 3458.523616 4320214.052 0.03048178 0.555948191 5.68E-06 5.245318359 -0.018250011 QGS(ph)LAMEELK ddPTM_K562_Paclitaxel_30min_R1 3 QGSLAMEELK 10 0 P16150 P16150 SPN Leukosialin 1 QGS(1)LAMEELK;QGS(1)LAMEELK;QGS(1)LAMEELK 134.37 5.97E-13 46014000 4472 3598.28 8899.7 5610.4 3674.9 4028.9 4400.9 7931.5 5339.3 13037.2 TRUE FALSE 4534.621797 3991.152379 6652.860665 5250.574055 4175.483597 4743.368846 5235.947801 7257.669568 5852.163622 10380.21148 0.436852544 0.384496249 0.640917642 0.505825345 0.402254193 0.45696264 0.504416293 0.699183208 0.56378077 1 13.34154822 -9.591409664 0.543420396 1.024083529 0.464500164 0.77796717 0.082564612 1.001870027 0.496892283 0.141161959 0.040863787 2.56E-10 9.591409664 -0.559583365 QGS(ph)LHVGDEILEINGTNVTNHSVDQLQK ddPTM_K562_Paclitaxel_30min_R1 1 QGSLHVGDEILEINGTNVTNHSVDQLQK 28 0 Q00013-3;Q00013;A6NFY0;A8MTH1;Q00013-2 Q00013-3 MPP1 55 kDa erythrocyte membrane protein 1 QGS(0.998)LHVGDEILEINGT(0.002)NVTNHSVDQLQK 58.838 0.0020769 22103000 2030.3 1693.1 3311.8 2369.2 1605.3 1581.1 1260.9 2504.4 1502.4 2828.4 TRUE FALSE 2058.730464 1877.958384 2475.69513 2217.250116 1823.969038 1861.485885 1500.149193 2291.635588 1646.712233 2251.970527 0.914190678 0.833917834 1.09934615 0.984582209 0.809943565 0.826603129 0.666149567 1.01761349 0.731231698 1 11.13697223 -6.762000699 24.99784248 0.833249518 0.959241054 0.186891461 0.117779557 24.2104845 1078207.683 0.035074982 0.042228173 1.73E-07 6.762000699 0.125991535 QGS(ph)PVAAGAPAK ddPTM_K562_Paclitaxel_30min_R1 4 QGSPVAAGAPAK 12 0 Q9NZI8 Q9NZI8 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 1 QGS(1)PVAAGAPAK;QGS(1)PVAAGAPAK;QGS(1)PVAAGAPAK;QGS(1)PVAAGAPAK 162.7 0.00014929 2278010000 23673.3 18162.7 42141.2 24416.9 17545.8 15533.5 15374.6 23920.8 18796.4 29595.6 TRUE FALSE 24004.79924 20145.76501 31502.13286 22850.90932 19935.83501 18288.14812 18291.85009 21888.57873 20601.8782 23564.00047 1.018706449 0.854938236 1.336875413 0.969738112 0.846029308 0.776105405 0.776262507 0.928899096 0.874294593 1 14.52429687 -6.562423173 5.706682632 0.857171364 1.065001765 0.341134659 0.126358814 0.202927212 16.79911654 0.037813322 0.049811842 2.74E-07 6.562423173 0.207830401 QGS(ph)PVAAGAPAKQQQVDIPLR ddPTM_K562_Paclitaxel_30min_R1 2 QGSPVAAGAPAKQQQVDIPLR 21 1 Q9NZI8 Q9NZI8 IGF2BP1 Insulin-like growth factor 2 mRNA-binding protein 1 1 QGS(1)PVAAGAPAKQQQVDIPLR;QGS(1)PVAAGAPAKQQQVDIPLR 72.271 0.0038144 241890000 4724.7 3831.2 7494.7 4638.6 3058.8 3566.1 2422.67 3668 17132.5 4400 TRUE FALSE 4790.860377 4249.503372 5602.570292 4341.100958 3475.460346 4198.497764 2882.358985 3356.380505 18778.15318 3503.277585 1.367536617 1.213007896 1.599236759 1.23915415 0.992059653 1.198448499 0.822760662 0.958068673 5.360167078 1 11.77448959 -8.684397022 24.99999924 3.180918177 1.174506622 0.39333279 0.996662341 26.94122113 8740.916692 0.602898541 0.227873977 2.07E-09 8.684397022 -2.006411555 QGSGRESPS(ph)LASR ddPTM_K562_Paclitaxel_30min_R1 1 QGSGRESPSLASR 13 1 H3BUF6;Q8WWM7-7;H3BSK9;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 QGSGRES(0.23)PS(0.77)LASR 95.751 0.0079579 92708000 2624.1 2399.1 3420.1 3065 2608.5 2638.9 2414.4 2905.1 2303.2 3141.5 TRUE FALSE 2660.845496 2661.041851 2556.653456 2868.424618 2963.821862 3106.871863 2872.519796 2658.293622 2524.432651 2501.260576 1.063801797 1.0638803 1.022145985 1.1467916 1.184931267 1.24212243 1.148428846 1.062781562 1.009264159 1 11.28843965 -8.539680516 3.171984972 1.005575651 1.125613585 0.38929944 0.06049702 0.31271956 6.313382899 0.05448689 0.018982107 2.89E-09 8.539680516 0.120037934 QGSIT(ph)SPQANEQSVTPQR ddPTM_K562_Paclitaxel_30min_R1 1 QGSITSPQANEQSVTPQR 18 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 QGS(0.018)IT(0.621)S(0.343)PQANEQS(0.016)VT(0.003)PQR 99.711 0.0051616 0 589.08 814.79 1137.8 906.18 792.36 519.8 634.91 885.48 437.7 972.71 TRUE FALSE 597.3289375 903.7515276 850.5483179 848.0616707 900.2928468 611.9792316 755.380858 810.252947 479.7430407 774.4711681 0.771273305 1.166927272 1.098231094 1.095020326 1.162461411 0.790189818 0.975350522 1.046201564 0.619445966 1 9.597067721 -7.259235634 24.99553842 0.894694732 1.068995494 0.237812066 0.153534713 296.5882554 3364001.673 0.05052022 0.048216893 5.51E-08 7.259235634 0.174300763 QGSITSPQANEQS(ph)VTPQRR ddPTM_K562_Paclitaxel_30min_R1 2 QGSITSPQANEQSVTPQRR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 QGSIT(0.001)S(0.21)PQANEQS(0.669)VT(0.12)PQRR;QGSITSPQANEQS(0.695)VT(0.305)PQRR 224.4 1.29E-36 45306000 4343.2 4068.4 4920.1 4675 3617.2 3991.1 4122.6 4474.5 2735.1 4847.6 TRUE FALSE 4404.0182 4512.60167 3677.959904 4375.166425 4109.92388 4698.865547 4904.841829 4094.363296 2997.818576 3859.656459 1.14103891 1.169171847 0.952924164 1.133563692 1.06484189 1.217431032 1.270797513 1.060810292 0.776706064 1 11.91425673 -8.58144547 6.777010109 0.893423452 1.132774283 0.515263878 0.094685925 0.175377659 15.83840516 0.066451806 0.02467311 2.62E-09 8.58144547 0.239350831 QGSITSPQANEQSVT(ph)PQRR ddPTM_K562_Paclitaxel_30min_R1 3 QGSITSPQANEQSVTPQRR 19 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 QGSITSPQANEQS(0.004)VT(0.996)PQRR;QGSITSPQANEQS(0.172)VT(0.828)PQRR;QGSITSPQANEQSVT(1)PQRR 231.38 1.14E-45 213602000 6107.3 5538.5 6457.8 6287.4 5838 5031.1 4754.4 6269.1 3429.98 6769 TRUE FALSE 6192.821043 6143.21216 4827.448521 5884.154305 6633.234438 5923.294945 5656.52258 5736.500825 3759.444905 5389.474084 1.149058507 1.139853734 0.895717921 1.091786362 1.23077583 1.099048785 1.04955001 1.064389722 0.697553202 1 12.39592878 -8.64367364 7.851307276 0.850718677 1.090576303 0.45746212 0.105401911 0.200085888 12.6669876 0.071945556 0.02682304 2.27E-09 8.64367364 0.239857626 QGSPDQVSPVS(ph)EMTSTSLYQDKQEGK ddPTM_K562_Paclitaxel_30min_R1 1 QGSPDQVSPVSEMTSTSLYQDKQEGK 26 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 QGSPDQVS(0.081)PVS(0.905)EMT(0.012)S(0.001)T(0.001)S(0.001)LYQDKQEGK 76.796 0.00014044 0 452.46 505.76 968.28 456.12 290.8 372.27 428.65 527.12 640.77 637.25 TRUE FALSE 458.795836 560.9805872 723.8257385 426.8665047 330.4118833 438.2868576 509.9840998 482.3378658 702.3188215 507.3781002 0.904248401 1.10564604 1.426600277 0.841318347 0.651214318 0.863826912 1.005136208 0.950647782 1.384211934 1 8.98691744 -11.17925406 15.44817814 1.000000663 1.00714531 0 0.227229729 0 0 0.233251381 0.056571769 6.62E-12 11.17925406 0.007144647 QGSRQDS(ph)WEVVEGLR ddPTM_K562_Paclitaxel_30min_R1 2 QGSRQDSWEVVEGLR 15 1 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3;C9J8P4;C9JEF2;C9JZ19;Q9H4L5-6;Q9H4L5-2;Q9H4L5-8;Q9H4L5-4 Q9H4L5-5;Q9H4L5-6 OSBPL3 Oxysterol-binding protein-related protein 3 1 QGS(0.018)RQDS(0.982)WEVVEGLR;QGS(0.012)RQDS(0.988)WEVVEGLR 84.436 0.01435 6810600 2077.42 2002.83 2906.33 2530.99 1829.48 2086.2 1718.94 2356.1 2099.71 2387.3 TRUE FALSE 2106.510289 2221.505753 2172.591046 2368.66363 2078.686149 2456.158278 2045.099892 2155.934599 2301.396527 1900.76695 1.108242275 1.168741782 1.143007588 1.246162045 1.0936039 1.29219328 1.075934055 1.134244574 1.210772592 1 10.89236594 -11.480417 3.208840561 0.996475705 1.163899809 0.361686627 0.065222665 18183799.7 22685593.57 566634.7841 0.015276435 3.31E-12 11.480417 0.167424104 QHDYS(ph)DYEDSSLEFLER ddPTM_K562_Paclitaxel_30min_R1 3 QHDYSDYEDSSLEFLER 17 0 A0A0A0MQS0;F8W9L8;A8MW92 A0A0A0MQS0 PHF20L1 PHD finger protein 20-like protein 1 1 QHDY(0.009)S(0.991)DYEDSSLEFLER;QHDY(0.001)S(0.999)DYEDSSLEFLER;QHDY(0.007)S(0.993)DYEDSSLEFLER 133.84 1.31E-07 21851200 5197.22 4601.59 5603.68 5449.09 4939.92 4522.05 4210.73 4882.38 5751.98 5699.12 TRUE FALSE 5269.997115 5104.007158 4188.961679 5099.609757 5612.820738 5323.972075 5009.694036 4467.591344 6304.48338 4537.636216 1.161397006 1.124816295 0.923159434 1.1238472 1.236948153 1.173291957 1.104031658 0.984563577 1.389376116 1 12.14772524 -6.508596962 24.46704857 1.149423502 1.066661765 0.075103731 0.122606589 1321.332506 2263662.293 0.03440773 0.048810724 3.10E-07 6.508596962 -0.082761737 QHEAPSNRPLNELLTPQGPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 QHEAPSNRPLNELLTPQGPSPR 22 1 P10398;Q96II5 P10398 ARAF Serine/threonine-protein kinase A-Raf 1 QHEAPSNRPLNELLTPQGPS(1)PR;QHEAPSNRPLNELLT(0.001)PQGPS(0.999)PR;QHEAPSNRPLNELLTPQGPS(0.999)PR;QHEAPSNRPLNELLT(0.033)PQGPS(0.967)PR 141.74 9.85E-17 438137000 5479.16 5539.8 7113.26 5635.89 4981.98 4920.21 4681.02 5885.63 5339.01 6614.57 TRUE FALSE 5555.885145 6144.654098 5317.429537 5274.429241 5660.610022 5792.74016 5569.219108 5385.608995 5851.845766 5266.517003 1.054944879 1.16673963 1.009667212 1.001502366 1.074829915 1.099918629 1.057476717 1.022613046 1.111141531 1 12.36263344 -8.906817256 0.006505796 1.31E-07 2.098406751 0.092613544 0.049319828 8766.756326 41.57699965 6751.198921 6655.004711 1.24E-09 8.906817256 2.09840662 QHS(ph)PGSADSLSNDSQR ddPTM_K562_Paclitaxel_30min_R1 2 QHSPGSADSLSNDSQR 16 0 O43439-2;O43439-5;O43439;O43439-4 O43439-2 CBFA2T2 Protein CBFA2T2 1 QHS(0.996)PGS(0.004)ADSLSNDSQR;QHS(0.999)PGS(0.001)ADSLSNDSQR 95.365 0.0046004 10105200 3837.3 3014 4207 4118.7 4152.6 3481.6 3073.4 4162.3 3051.5 5235.6 TRUE FALSE 3891.034039 3343.078713 3144.890818 3854.545017 4718.254424 4099.012876 3656.561606 3808.686635 3344.610209 4168.581846 0.93341913 0.801970271 0.754427029 0.924665788 1.13186081 0.983311118 0.8771716 0.913664833 0.802337661 1 12.02534095 -6.500578107 23.97798137 0.952532352 0.829209317 0.264926873 0.09072024 650.7472183 699692.7167 0.027545574 0.040439358 3.16E-07 6.500578107 -0.123323034 QHSSTS(ph)PFPTSTPLRR ddPTM_K562_Paclitaxel_30min_R1 1 QHSSTSPFPTSTPLRR 16 1 Q13111;Q13111-3;Q13111-2;K7EPA1 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 QHS(0.027)S(0.072)T(0.072)S(0.828)PFPTSTPLRR 73.984 0.019964 35442000 451.97 417.23 737.85 682.08 701.41 395.17 717.16 543.4 626.42 695.88 TRUE FALSE 458.2989744 462.7845824 551.5706419 638.3344417 796.953917 465.247851 853.2373662 497.2347782 686.5904399 554.059274 0.827165966 0.835261865 0.995508365 1.152104967 1.438391079 0.839707722 1.539974884 0.897439681 1.239200339 1 9.113896516 -6.004114369 2.565213721 1.167698313 0.828093937 0.288093249 0.206479925 0.333595023 4.376032098 0.054688493 0.128171451 9.91E-07 6.004114369 -0.339604376 QHT(ph)IMPSK ddPTM_K562_Paclitaxel_30min_R1 1 QHTIMPSK 8 0 F2Z2F3;J3QSB7;B4DUC8;Q13126-7;Q13126-4;Q13126;Q13126-6;Q13126-5;Q13126-3;Q13126-2 F2Z2F3 MTAP Purine nucleoside phosphorylase;S-methyl-5-thioadenosine phosphorylase 1 QHT(1)IMPSK 90.15 0.015845 7080500 3077.8 2980.8 4910.8 3614.3 3272.1 2919.8 2605 3733.9 2424 3873.9 TRUE FALSE 3120.898696 3306.253824 3671.007804 3382.494975 3717.815417 3437.585534 3099.285151 3416.681889 2656.836031 3084.397054 1.011834288 1.071928733 1.190186523 1.096647065 1.205362135 1.114508111 1.004826907 1.107730889 0.861379383 1 11.59077278 -7.758708255 5.704914438 1.001622049 1.120267373 0.378161192 0.075970095 0.187296341 20.51046439 0.030876932 0.022192986 1.74E-08 7.758708255 0.118645325 QHYQKETES(ph)APGS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 QHYQKETESAPGSPR 15 1 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50;H0YBW1 Q6PKG0 LARP1 La-related protein 1 2 QHYQKETES(1)APGS(1)PR 112.44 0.0018484 44549000 9534.9 7650.5 13732 9126.7 6663 6153.6 6249.9 8479.8 11628 11554 TRUE FALSE 9668.418018 8485.807462 10265.18676 8541.354312 7570.613406 7244.854559 7435.785898 7759.388061 12744.92136 9199.288458 1.050996288 0.922441719 1.115867473 0.928479887 0.82295641 0.787545101 0.808300113 0.843476982 1.385424689 1 13.16730656 -11.27415669 4.757809514 1.000018372 0.947809814 0 0.174079361 3.43E-05 5.23E-06 0.170309894 0.041291682 5.32E-12 11.27415669 -0.052208558 QHYQKETESAPGS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 QHYQKETESAPGSPR 15 1 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50;H0YBW1 Q6PKG0 LARP1 La-related protein 1 1 QHYQKETES(0.002)APGS(0.998)PR;QHYQKETES(0.002)APGS(0.998)PR 100.27 0.0036083 55446300 9276.4 7571.5 16038.1 11259.3 9169.4 7721.8 5113.4 8306.1 16969.5 9232.5 TRUE FALSE 9406.29822 8398.181975 11989.0833 10537.17889 10418.42752 9091.152811 6083.640956 7600.44496 18599.4963 7350.911432 1.279609788 1.142468121 1.630965549 1.433452027 1.417297381 1.236738178 0.827603626 1.03394593 2.530229954 1 12.84370742 QIANS(ph)QDGYVWQVTDMNR ddPTM_K562_Paclitaxel_30min_R1 4 QIANSQDGYVWQVTDMNR 18 0 P10155-3;P10155-5;P10155-4;P10155;D6RDN1;D6RE09;P10155-2 P10155-3 TROVE2 60 kDa SS-A/Ro ribonucleoprotein 1 QIANS(0.935)QDGY(0.065)VWQVTDMNR;QIANS(1)QDGYVWQVTDMNR;QIANS(0.833)QDGY(0.133)VWQVT(0.034)DMNR;QIANS(0.958)QDGY(0.042)VWQVTDMNR 161.14 1.72E-09 144652000 3500.28 2995.25 3733.6 3348.75 2899.61 2821.65 2643.7 3932.02 3445.83 3521.6 TRUE FALSE 3549.294719 3322.281524 2791.006503 3133.976163 3294.585973 3322.03001 3145.328274 3597.970358 3776.817368 2803.895987 1.265843931 1.184880445 0.995403009 1.117721976 1.17500292 1.184790743 1.121770668 1.283203933 1.346989113 1 11.45321712 -8.252428361 24.76537445 1.236322394 1.14592462 0.047320131 0.106105211 1168.091375 3210329.625 0.050322918 0.028492585 5.59E-09 8.252428361 -0.090397773 QICLVMLETLS(ph)QSPQGR ddPTM_K562_Paclitaxel_30min_R1 1 QICLVMLETLSQSPQGR 17 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 QICLVMLET(0.008)LS(0.756)QS(0.236)PQGR 99.069 0.002515 9621900 67.199 113.58 143.42 0 130.06 150.11 139.27 107.75 124.34 223.59 TRUE FALSE 68.13999333 125.9810485 107.2118472 0 147.7763739 176.7299009 165.6957555 98.59596495 136.2834126 178.0222353 0.382761138 0.707670299 0.602238518 0 0.830100654 0.992740601 0.930758763 0.553840731 0.76554152 1 7.475913637 -6.926330839 25 0.835359128 0.451123271 0.489849134 0.210224062 40.17885193 13633.74196 0.067695978 0.076760023 1.18E-07 6.926330839 -0.384235857 QICLVMLETLSQS(ph)PQGR ddPTM_K562_Paclitaxel_30min_R1 8 QICLVMLETLSQSPQGR 17 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 QICLVMLET(0.025)LS(0.095)QS(0.881)PQGR;QICLVMLETLS(0.005)QS(0.995)PQGR;QICLVMLETLSQS(1)PQGR;QICLVMLETLSQS(1)PQGR;QICLVMLETLS(0.287)QS(0.713)PQGR;QICLVMLETLS(0.001)QS(0.998)PQGR;QICLVMLETLS(0.001)QS(0.999)PQGR;QICLVMLET(0.009)LS(0.029)QS(0.962)PQGR 236.66 5.90E-51 1354870400 22892.69 22727.3 22748.72 20911.49 18544.37 18353.14 24043.68 28274.41 23402.45 31485.1 TRUE FALSE 23213.25829 25208.74347 17005.52428 19570.32063 21070.42715 21607.81169 28605.84276 25872.32239 25650.35989 25068.41934 0.92599609 1.005597646 0.678364442 0.780676291 0.840516782 0.861953496 1.141110749 1.032068358 1.02321409 1 14.61358341 -7.689086434 7.643966135 1.051345598 0.843688279 0.557376151 0.087392688 0.189194085 17.13786972 0.035997161 0.027739101 2.05E-08 7.689086434 -0.207657319 QIDSS(ph)PVGGETDETTVSQNYR ddPTM_K562_Paclitaxel_30min_R1 1 QIDSSPVGGETDETTVSQNYR 21 0 F1T0I1;O15027-2;O15027-4;O15027-3;O15027;O15027-5;A0A3F2YNX0;A0A3F2YNZ0 F1T0I1 SEC16A Protein transport protein Sec16A 1 QIDS(0.244)S(0.756)PVGGETDETTVSQNYR 131.78 5.33E-11 26260000 1424 1287.5 1989.6 1734.9 1360 1448.3 1798.5 1813.1 1495.5 1746.1 TRUE FALSE 1443.940393 1428.073604 1487.300873 1623.631279 1545.255025 1705.13567 2139.755986 1659.065838 1639.149457 1390.243862 1.038623822 1.027210868 1.06981294 1.167875165 1.111499261 1.226501132 1.539122772 1.193363182 1.179037363 1 10.44112225 -6.68388712 1.306526116 1.250959863 1.039683516 0.238659692 0.128807945 0.564371864 2.010398997 0.050863644 0.078314285 2.07E-07 6.68388712 -0.211276347 QILIACS(ph)PVSSVR ddPTM_K562_Paclitaxel_30min_R1 4 QILIACSPVSSVR 13 0 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 QILIACS(0.999)PVS(0.001)SVR;QILIACS(0.999)PVS(0.001)SVR;QILIACS(0.962)PVS(0.037)S(0.001)VR;QILIACS(0.769)PVS(0.228)S(0.003)VR 169.98 0.00013321 1609680000 17373.3 16823.8 19497.8 18369.7 15467.9 15334.6 16958.3 18934.6 16040.7 19319.4 TRUE FALSE 17616.5798 18660.67938 14575.33924 17191.54966 17574.88985 18053.976 20176.0489 17325.98754 17581.48091 15382.09568 1.14526526 1.213142849 0.947552242 1.117633775 1.142554969 1.17370067 1.311658003 1.126373669 1.142983458 1 13.90896445 QIMEY(ph)KR ddPTM_K562_Paclitaxel_30min_R1 1 QIMEYKR 7 1 Q8N0V3 Q8N0V3 RBFA "Putative ribosome-binding factor A, mitochondrial" 1 QIMEY(1)KR 78.616 0.012327 11512000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 QIPS(ph)AEDLETDGGGPGQVVDDGLEHR ddPTM_K562_Paclitaxel_30min_R1 3 QIPSAEDLETDGGGPGQVVDDGLEHR 26 0 J3KPH8;Q8WUI4-3;Q8WUI4-4;Q8WUI4;Q8WUI4-7;Q8WUI4-6;Q8WUI4-5;Q8WUI4-8;Q8WUI4-10 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 QIPS(1)AEDLETDGGGPGQVVDDGLEHR;QIPS(1)AEDLETDGGGPGQVVDDGLEHR;QIPS(0.993)AEDLET(0.007)DGGGPGQVVDDGLEHR 155.64 5.57E-26 105483000 2772.44 2772.35 2865.87 2929.42 2618.85 2456.86 2406.07 2998.92 2262.25 3259.11 TRUE FALSE 2811.262714 3075.044548 2142.345674 2741.540113 2975.581707 2892.549625 2862.609222 2744.143027 2479.549221 2594.901593 1.083379316 1.185033204 0.825598042 1.056510243 1.146703103 1.11470494 1.103166775 1.057513331 0.955546533 1 11.34146411 -8.680305131 5.705746713 0.978503465 1.072454607 0.145713913 0.091269773 0.400107742 20.75775794 0.068288605 0.024305338 2.09E-09 8.680305131 0.093951142 QIS(ph)DGEREELNLTANR ddPTM_K562_Paclitaxel_30min_R1 2 QISDGEREELNLTANR 16 1 O95816-2;O95816 O95816-2 BAG2 BAG family molecular chaperone regulator 2 1 QIS(1)DGEREELNLTANR;QIS(1)DGEREELNLTANR 129.36 3.98E-05 31485000 2305.56 2238.51 2471.8 2460.4 2117.59 1746.43 2096.58 2339.5 2287.1 2218.5 TRUE FALSE 2337.844953 2482.918092 1847.763519 2302.600956 2406.041609 2056.134839 2494.39511 2140.744872 2506.786174 1766.368482 1.323531855 1.405662588 1.04608044 1.303579055 1.362140252 1.164046381 1.41216011 1.211946937 1.419175104 1 10.78657062 -11.30463979 5.639117971 0.999965265 1.289723057 0.368945455 0.115314955 4.82E-05 5.94E-06 0.106782827 0.02589554 4.96E-12 11.30463979 0.289757791 QIS(ph)LPDLSQEEPQLK ddPTM_K562_Paclitaxel_30min_R1 2 QISLPDLSQEEPQLK 15 0 H0YBZ4;Q15390-2;Q15390 H0YBZ4 MTFR1 Mitochondrial fission regulator 1 1 QIS(0.985)LPDLS(0.015)QEEPQLK;QIS(0.844)LPDLS(0.156)QEEPQLK 221.31 4.86E-26 24983000 2632.5 2627.4 4472.6 3068.7 2565.6 2430 2330.86 3219.6 2071.92 3510.2 TRUE FALSE 2669.363122 2914.268417 3343.436814 2871.887317 2915.078156 2860.926381 2773.128517 2946.074884 2270.937174 2794.819313 0.955111162 1.042739473 1.196298021 1.027575308 1.043029201 1.023653432 0.992238927 1.054119982 0.812552412 1 11.4485393 -8.736919431 24.99839835 0.906276174 1.044327731 0.360204691 0.072211006 206.5697021 210601.5885 0.048745446 0.01840514 1.83E-09 8.736919431 0.138051557 QISESTNHIYSNLANCS(ph)PNR ddPTM_K562_Paclitaxel_30min_R1 2 QISESTNHIYSNLANCSPNR 20 0 P10721-2;P10721 P10721-2 KIT Mast/stem cell growth factor receptor Kit 1 QISESTNHIYS(0.001)NLANCS(0.999)PNR;QISESTNHIYSNLANCS(1)PNR 127.16 5.34E-07 66123000 3911.4 4075.5 4408.8 4094.7 3639.4 4127.9 4678.5 4582.7 3558.2 4531.3 TRUE FALSE 3966.171668 4520.476872 3295.743913 3832.084269 4135.147896 4859.925106 5566.220952 4193.371031 3899.981008 3607.818573 1.099326806 1.252966795 0.913500456 1.062161024 1.146162927 1.34705363 1.542821747 1.162300971 1.080980357 1 11.81691108 -7.039724388 5.752014008 1.256377077 1.08417959 0.142522796 0.159378586 0.342559018 30.37284838 0.054729973 0.056271773 9.13E-08 7.039724388 -0.172197487 QISFNGS(ph)EGRR ddPTM_K562_Paclitaxel_30min_R1 1 QISFNGSEGRR 11 1 O14646;O14646-2 O14646;O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 QISFNGS(1)EGRR 75.911 0.026962 5098800 821.86 853.03 1044.1 880.19 771.85 770.25 771.08 1000.3 804.28 916.44 TRUE FALSE 833.3685757 946.1667002 780.5040417 823.738553 876.9890375 906.8430227 917.3884047 915.3182713 881.5346876 729.669025 1.142118614 1.296706682 1.069668596 1.128920819 1.201899776 1.242814196 1.257266477 1.254429392 1.208129518 1 9.511098401 QITTS(ph)PITVR ddPTM_K562_Paclitaxel_30min_R1 4 QITTSPITVR 10 0 O95835-2;O95835 O95835-2 LATS1 Serine/threonine-protein kinase LATS1 1 QIT(0.002)T(0.082)S(0.916)PITVR;QIT(0.002)T(0.072)S(0.755)PIT(0.171)VR;QITT(0.075)S(0.85)PIT(0.075)VR;QIT(0.001)T(0.079)S(0.917)PIT(0.003)VR 168.82 9.80E-05 533685000 14879.7 14437.7 18295.3 15717.5 14808.2 14880.9 14058.7 16417 12617.6 17132.2 TRUE FALSE 15088.06171 16014.05691 13676.42524 14709.4499 16825.32754 17519.81868 16726.26493 15022.27338 13829.57686 13640.64824 1.106110314 1.1739953 1.002622823 1.078354169 1.233469792 1.284383145 1.226207483 1.101287352 1.013850414 1 13.73562459 -8.649101435 3.422872905 1.003989789 1.157607528 0.372231504 0.077539684 0.297376877 6.440617696 0.073036176 0.023166337 2.24E-09 8.649101435 0.153617738 QITTS(ph)PITVRK ddPTM_K562_Paclitaxel_30min_R1 1 QITTSPITVRK 11 1 O95835-2;O95835 O95835-2 LATS1 Serine/threonine-protein kinase LATS1 1 QIT(0.001)T(0.005)S(0.497)PIT(0.497)VRK 96.067 0.024276 54324000 3707.3 2999.2 5221.7 3331.6 3100.1 2712.8 2301.6 3910.7 3732.9 4370.9 TRUE FALSE 3759.213638 3326.662799 3903.417254 3117.926088 3522.386105 3193.87699 2738.316585 3578.461625 4091.461724 3480.108181 1.080200224 0.95590787 1.121636757 0.895927921 1.012148451 0.917752215 0.786848122 1.028261605 1.175670845 1 11.76491644 -4.290425943 15.91664665 0.990042916 0.995547758 0 0.108852367 0 0 0.025372532 0 5.12E-05 4.290425943 0.005504842 QIVGT(ph)PVNSEDSDTR ddPTM_K562_Paclitaxel_30min_R1 3 QIVGTPVNSEDSDTR 15 0 Q5QJE6;J3KP30 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 QIVGT(0.716)PVNS(0.283)EDS(0.001)DTR;QIVGT(0.65)PVNS(0.087)EDS(0.259)DT(0.004)R;QIVGT(0.765)PVNS(0.229)EDS(0.006)DTR 216.16 1.52E-18 165550000 6439.9 5748.7 6497.9 6030.8 4906.29 4971.15 5227.5 6198.05 4557.6 7317.4 TRUE FALSE 6530.078469 6376.362507 4857.42478 5644.011481 5574.609762 5852.713654 6219.390836 5671.486965 4995.377844 5826.109863 1.120829957 1.094445978 0.833733811 0.96874443 0.956832242 1.004566304 1.067503185 0.973460353 0.857412229 1 12.50831719 -5.589192357 12.40801346 0.962794926 1.114241547 0.461281511 0.064871866 0.601931814 110.8572646 0.017081609 0.045219681 2.58E-06 5.589192357 0.151446622 QIVGTPVNSEDS(ph)DTRQTSHLQAR ddPTM_K562_Paclitaxel_30min_R1 1 QIVGTPVNSEDSDTRQTSHLQAR 23 1 Q5QJE6;J3KP30 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 QIVGTPVNS(0.155)EDS(0.838)DT(0.005)RQTS(0.001)HLQAR 108.38 2.10E-05 26938000 748.03 590.18 773.48 698.61 614.47 712.26 814.84 746.51 800.85 797.46 TRUE FALSE 758.5047279 654.6178483 578.2054077 653.8042815 698.1712171 838.5693104 969.4516362 683.0893159 877.7752208 634.9372143 1.194613752 1.030996189 0.910649738 1.029714855 1.099590954 1.320712177 1.526846457 1.07583758 1.382459873 1 9.310470128 -7.121756392 3.995290009 1.281639037 1.034370773 0.314883417 0.153325377 0.261965697 7.194909518 0.051114164 0.051572967 7.56E-08 7.121756392 -0.247268263 QKEAGLS(ph)QSHDDLSNATATPSVR ddPTM_K562_Paclitaxel_30min_R1 1 QKEAGLSQSHDDLSNATATPSVR 23 1 O14523-2;O14523 O14523-2 C2CD2L C2 domain-containing protein 2-like 1 QKEAGLS(0.885)QS(0.114)HDDLS(0.001)NATATPSVR 74.222 0.00081058 78929000 2183.6 1958.6 3834 2366.4 1708.2 1655.4 1445.6 2316.6 2633.8 2698.3 TRUE FALSE 2214.177137 2172.446572 2866.059282 2214.629696 1940.88576 1948.961947 1719.895053 2119.79037 2886.788258 2148.384979 1.030624008 1.011199851 1.334052933 1.030834658 0.903416184 0.907175374 0.800552541 0.986690184 1.343701565 1 11.06903682 -6.513630701 24.8234921 0.975148918 1.125309818 0.12654668 0.155689399 787.8158176 2114649.19 0.047015199 0.06427878 3.06E-07 6.513630701 0.1501609 QKEDVEVVGGS(ph)DGEGAIGLSSDPK ddPTM_K562_Paclitaxel_30min_R1 1 QKEDVEVVGGSDGEGAIGLSSDPK 24 1 Q8NHZ8 Q8NHZ8 CDC26 Anaphase-promoting complex subunit CDC26 1 QKEDVEVVGGS(0.984)DGEGAIGLS(0.007)S(0.008)DPK 72.791 0.00042232 40862000 3614.2 2785.3 8680.5 4329.7 3325 2525.3 2078.8 4482.4 3646.5 5798.5 TRUE FALSE 3664.809951 3089.408473 6489.000416 4052.012421 3777.921293 2973.126498 2473.241448 4101.592142 3996.762618 4616.762517 0.793805169 0.669172058 1.405530475 0.877673999 0.818305312 0.643985149 0.535709047 0.888413066 0.865706781 1 12.17266581 -6.732257991 3.860273027 0.763792759 0.956038805 0.09464598 0.215233636 0.467924442 14.93013748 0.069345637 0.087189673 1.85E-07 6.732257991 0.192246046 QKFNDS(ph)EGDDTEETEDYR ddPTM_K562_Paclitaxel_30min_R1 2 QKFNDSEGDDTEETEDYR 18 1 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 QKFNDS(0.83)EGDDT(0.076)EET(0.094)EDYR;QKFNDS(0.982)EGDDT(0.013)EET(0.005)EDYR 80.016 0.00718 231622000 2550.62 2475.97 5046.3 3145.71 2478.43 1841.69 2131.74 2632.59 1463.06 3396 TRUE FALSE 2586.336549 2746.304778 3772.299153 2943.95824 2816.034126 2168.287863 2536.226537 2408.935047 1603.59345 2703.893336 0.956523142 1.015685324 1.395136081 1.088784902 1.041473822 0.801913239 0.937990602 0.89091349 0.59306831 1 11.40082253 -7.093251814 2.944141071 0.842994249 1.12515784 0.432738283 0.146952972 0.263935674 4.431067264 0.052745142 0.054168176 8.07E-08 7.093251814 0.282163591 QKFNDS(ph)EGDDTEETEDYRQFR ddPTM_K562_Paclitaxel_30min_R1 1 QKFNDSEGDDTEETEDYRQFR 21 2 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 QKFNDS(0.996)EGDDT(0.004)EETEDYRQFR 86.987 0.0062971 153660000 662.98 472.85 1087.8 644.08 500.18 379.43 484.35 708.38 674.54 757.38 TRUE FALSE 672.2637655 524.4773621 813.1714363 602.7715916 568.3129841 446.716583 576.252884 648.1986974 739.3325809 603.0255403 1.114818064 0.869743198 1.348485896 0.999578876 0.94243601 0.740792144 0.955602782 1.074910852 1.226038586 1 9.236075296 -6.495268339 24.96717532 0.978757304 1.101412443 0.106556905 0.156276427 1708.138249 1544613.029 0.046214158 0.068350238 3.20E-07 6.495268339 0.122655139 QKFNDSEGDDT(ph)EETEDYRQFR ddPTM_K562_Paclitaxel_30min_R1 1 QKFNDSEGDDTEETEDYRQFR 21 2 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 QKFNDSEGDDT(1)EETEDYRQFR 134.08 2.97E-10 163520000 1535.7 1276.9 2420.7 1880.2 1436.1 985.34 914.78 1224.4 1449.4 1748.6 TRUE FALSE 1557.204538 1416.31626 1809.564346 1759.612387 1631.721133 1160.076214 1088.35473 1120.379578 1588.621346 1392.23436 1.118493109 1.017297303 1.299755557 1.26387657 1.172016135 0.833247797 0.781732416 0.804734899 1.141058856 1 10.44318637 -7.253175298 23.96714421 0.891799325 1.177513666 0.533178103 0.12187924 273.9880302 794608.7339 0.042330602 0.04160166 5.58E-08 7.253175298 0.285714341 QKLS(ph)SSPPSGSGGGGGASSSSHCSGESQCR ddPTM_K562_Paclitaxel_30min_R1 2 QKLSSSPPSGSGGGGGASSSSHCSGESQCR 30 1 Q9Y4X0-2;Q9Y4X0-3;Q9Y4X0 Q9Y4X0-2 AMMECR1 AMME syndrome candidate gene 1 protein 1 QKLS(0.36)S(0.293)S(0.293)PPS(0.046)GS(0.008)GGGGGASSSSHCSGESQCR;QKLS(0.366)S(0.285)S(0.285)PPS(0.051)GS(0.013)GGGGGASSSSHCSGESQCR 72.425 8.39E-05 11143800 1282.08 1155.44 1742.93 1286.82 984.09 842.28 692.46 1280.95 1379.02 1392.57 TRUE FALSE 1300.033076 1281.594847 1302.905765 1204.289125 1118.139719 991.6465318 823.8506701 1172.125302 1511.481033 1108.76347 1.172507132 1.15587759 1.175098027 1.086155125 1.008456492 0.894371576 0.743035546 1.057146393 1.363213232 1 10.11473592 -6.558252108 2.679917583 0.994292244 1.166047911 0.18312904 0.146174845 0.481018632 6.99507221 0.049335874 0.070771454 2.77E-07 6.558252108 0.171755667 QKMNDS(ph)MDTS(ph)NK ddPTM_K562_Paclitaxel_30min_R1 1 QKMNDSMDTSNK 12 1 P06400 P06400 RB1 Retinoblastoma-associated protein 2 QKMNDS(1)MDT(0.453)S(0.547)NK 77.078 0.019871 12532000 852.14 930.34 1018.9 1264.8 1117.2 828.81 966.26 881.97 887.55 999.21 TRUE FALSE 864.0725891 1031.917667 761.6660934 1183.681389 1269.381554 975.7878164 1149.602791 807.0411434 972.8031432 795.5704535 1.086104424 1.297078923 0.957383586 1.487839806 1.59556146 1.226525963 1.445004381 1.014418195 1.222774349 1 9.635845887 -8.27311081 24.81725342 1.088947201 1.301957132 0.228144527 0.185372942 1170.843918 2489579.237 0.104081419 0.05065792 5.33E-09 8.27311081 0.213009931 QKRPGPWRTQTQEQMSR ddPTM_K562_Paclitaxel_30min_R1 1 QKRPGPWRTQTQEQMSR 17 3 H7C3C7;Q5SQN1-2;Q5SQN1 H7C3C7 SNAP47 Synaptosomal-associated protein 47 0 51.004 0.025721 7196400 883.61 796.48 1015.2 1021.1 1003.9 1198.3 837.64 829.61 834.35 524.4 FALSE TRUE 895.9832662 883.4423799 758.9002042 955.6112163 1140.648176 1410.80168 996.5778172 759.1294522 914.4930455 417.5269922 2.145928965 2.115892856 1.817607528 2.288741169 2.731914817 3.378947245 2.386858421 1.81815659 2.1902609 1 8.705725657 -6.500819959 22.33752743 2.369228635 2.038377179 0.008097427 0.585507981 644.8999714 653046.2461 0.169830806 0.248810243 3.16E-07 6.500819959 -0.330851456 QKS(ph)DAEEDGGTVSQEEEDR ddPTM_K562_Paclitaxel_30min_R1 1 QKSDAEEDGGTVSQEEEDR 19 1 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 1 QKS(1)DAEEDGGTVSQEEEDR 108.75 0.00034853 24112000 733.22 572.63 1316.2 642.06 648.8 602.56 726.1 861.89 447.83 1154.6 TRUE FALSE 743.4873422 635.1516799 983.9090314 600.8811454 737.1775443 709.4155556 863.8736845 788.6670648 490.8460725 919.2918862 0.80876091 0.69091405 1.070290129 0.653634775 0.801897151 0.771697832 0.939716425 0.857907131 0.533939307 1 9.844379197 -10.5848303 22.96640607 1 0.799186195 0.160709423 0.141708453 0 0 0.131707198 0.031943687 2.60E-11 10.5848303 -0.200813805 QKS(ph)PEIHR ddPTM_K562_Paclitaxel_30min_R1 1 QKSPEIHR 8 1 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 QKS(1)PEIHR 90.827 0.01093 122050000 2069 1776.4 3293.4 2268.7 1488.8 1649.3 1173.1 1606 1516.2 2031.2 TRUE FALSE 2097.972383 1970.353359 2461.940438 2123.195736 1691.599766 1941.780198 1395.689601 1469.560276 1661.837785 1617.240325 1.297254558 1.218342957 1.522309579 1.312851098 1.045979215 1.200675105 0.863006926 0.908683918 1.027576272 1 10.65931837 -7.07576206 1.343224741 0.957735543 1.345026737 0.683021143 0.110024125 0.248351132 0.919303033 0.049505149 0.052289602 8.40E-08 7.07576206 0.387291194 QKSDAEEDGGT(ph)VSQEEEDRKPK ddPTM_K562_Paclitaxel_30min_R1 1 QKSDAEEDGGTVSQEEEDRKPK 22 3 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 1 QKS(0.085)DAEEDGGT(0.891)VS(0.024)QEEEDRKPK 72.793 0.016944 7510300 1419 1178.5 5643.7 1853.7 1108.7 715.49 732.81 1755.2 790.24 3206.8 TRUE FALSE 1438.870378 1307.172615 4218.878135 1734.811979 1259.72371 842.3721055 871.856872 1606.084804 866.1460829 2553.2524 0.56354412 0.511963727 1.652354517 0.679451816 0.493380016 0.329921204 0.341469129 0.629034875 0.339232456 1 11.31812045 -6.518254535 24.10892512 0.494198516 0.918946355 0.200495851 0.343245914 181.6950687 947295.0161 0.100923174 0.134005188 3.03E-07 6.518254535 0.42474784 QLAELETEDGMQES(ph)P ddPTM_K562_Paclitaxel_30min_R1 3 QLAELETEDGMQESP 15 0 Q96QG7-2;Q96QG7 Q96QG7-2 MTMR9 Myotubularin-related protein 9 1 QLAELETEDGMQES(1)P;QLAELETEDGMQES(1)P;QLAELETEDGMQES(1)P 193.77 1.43E-07 14106800 4392.9 4399.85 5384.3 5335 3869.2 4295.75 4363.03 4986.9 4990.9 5000.3 TRUE FALSE 4454.414153 4880.240502 4024.966873 4992.836979 4396.250546 5057.540947 5190.892166 4563.231718 5470.298245 3981.236115 1.118852041 1.225810367 1.010984216 1.254092155 1.104242607 1.270344386 1.303839314 1.146184649 1.37402005 1 11.95900072 -6.317692376 24.9998155 1.21594919 1.129273579 0.112511793 0.111590627 597.5907112 265578.2327 0.029691474 0.044039588 4.81E-07 6.317692376 -0.086675611 QLDWRPER ddPTM_K562_Paclitaxel_30min_R1 1 QLDWRPER 8 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 0 79.906 0.026513 0 932.63 894.96 961.91 921.31 894.33 1021.1 881.99 1007.6 716.84 945.54 FALSE TRUE 945.6896974 992.6747594 719.0639237 862.2213002 1016.152887 1202.177748 1049.342998 921.9980908 785.6956849 752.838429 1.256165548 1.3185761 0.955137113 1.145293953 1.349762244 1.596860232 1.393848876 1.224695838 1.043644499 1 9.556196463 -8.736159262 3.418058738 1.005581185 1.28635214 0.311676919 0.156244013 0.326841943 7.393467244 0.157924992 0.046261673 1.84E-09 8.736159262 0.280770955 QLEEPGAGTPS(ph)PVR ddPTM_K562_Paclitaxel_30min_R1 2 QLEEPGAGTPSPVR 14 0 Q96P11-2;Q96P11-5;Q96P11;Q96P11-4;Q63ZY6;Q63ZY6-4;Q63ZY6-5 Q96P11-2 NSUN5;NSUN5P2 Probable 28S rRNA (cytosine-C(5))-methyltransferase;Putative methyltransferase NSUN5C 1 QLEEPGAGT(0.003)PS(0.997)PVR;QLEEPGAGT(0.008)PS(0.992)PVR 189.04 1.21E-06 270680000 5562.8 4611.5 5936.1 6067.1 4849.4 4617.7 5098.6 6273.9 3594.2 6089.1 TRUE FALSE 5640.696363 5114.999165 4437.458138 5677.983361 5509.970381 5436.584259 6066.032734 5740.893035 3939.438969 4848.138078 1.163476838 1.055044036 0.915291204 1.171167832 1.136512676 1.121375706 1.25120874 1.18414388 0.812567403 1 12.24321507 -8.756386519 24.99925157 0.906283681 1.121508772 0.4596133 0.094713527 108.2768636 535725.3846 0.072614742 0.025543481 1.75E-09 8.756386519 0.215225092 QLEMENS(ph)PLLSPR ddPTM_K562_Paclitaxel_30min_R1 2 QLEMENSPLLSPR 13 0 Q9HCM4-4;Q9HCM4-3;Q9HCM4 Q9HCM4-4 EPB41L5 Band 4.1-like protein 5 1 QLEMENS(0.997)PLLS(0.003)PR;QLEMENS(0.578)PLLS(0.422)PR 175.66 4.76E-31 26425000 2741.3 3042 3872.1 3241.7 2690 2995.9 3050 3471.3 2770 4137.2 TRUE FALSE 2779.686658 3374.135847 2894.540465 3033.791871 3056.423542 3527.1808 3628.721578 3176.391398 3036.070877 3294.036369 0.843854271 1.024316513 0.878721465 0.920995257 0.927865755 1.070777734 1.101603374 0.964285467 0.921687115 1 11.68564077 -7.173114629 8.258579572 1.014958828 0.922457534 0.344128548 0.063718622 0.407083575 34.68643224 0.02173388 0.021743645 6.71E-08 7.173114629 -0.092501294 QLFHPEQLITGKEDAANNYAR ddPTM_K562_Paclitaxel_30min_R1 2 QLFHPEQLITGKEDAANNYAR 21 1 P68363;Q71U36;Q9BQE3;F8VVB9;F8VQQ4;Q71U36-2;F5H5D3;A0A1W2PQM2;F8VS66;F8VRZ4;F8VWV9;P0DPH8;P0DPH7;P0DPH7-2;F8VX09;P68366;P68366-2;P68363-2;C9JJQ8;C9JDL2;C9JQ00;C9JEV8;Q9NY65-2;Q9NY65;C9J2C0;C9K0S6 P68363 TUBA1B;TUBA1A;TUBA1C;TUBA4A;TUBA8 Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-4A chain;Tubulin alpha-8 chain 0 ; 89.374 0.00064096 87382000 8323.5 7280.5 11208.1 9166.6 6462.8 6676.1 6672.2 8758.2 8733.6 10504 FALSE TRUE 8440.05468 8075.409611 8378.476535 8578.695304 7343.142776 7860.012598 7938.215119 8014.136243 9572.501303 8363.279034 1.009180089 0.965579359 1.00181717 1.025757394 0.878021975 0.939824268 0.949174969 0.958252883 1.144587101 1 13.02985298 -8.736701002 24.98898397 1.072293567 0.96476662 0.41065798 0.050941969 185.5085676 187388.7893 0.034383021 0.012982882 1.83E-09 8.736701002 -0.107526947 QLHDDYFYHDEL ddPTM_K562_Paclitaxel_30min_R1 1 QLHDDYFYHDEL 12 0 A8MXP8;Q14257;Q14257-2 A8MXP8 RCN2 Reticulocalbin-2 0 131.17 0.0015092 8884200 1739 1685.4 1584.7 1410.8 1566.3 1552.5 1934.9 2278.9 2025 2616.4 FALSE TRUE 1763.351365 1869.417672 1184.622886 1320.317603 1779.656578 1827.814077 2302.037174 2085.293221 2219.510298 2083.176244 0.846472482 0.897388148 0.568661864 0.63380024 0.854299574 0.877416917 1.105061168 1.001016225 1.065445281 1 11.02456919 -7.395333288 2.017523734 1.04168632 0.741903159 0.64616774 0.098369942 0.223354821 1.794388305 0.044942788 0.037626512 4.02E-08 7.395333288 -0.299783161 QLHLEGASLELS(ph)DDDTESK ddPTM_K562_Paclitaxel_30min_R1 2 QLHLEGASLELSDDDTESK 19 0 P35580;P35580-5;P35580-2;P35580-3;P35580-4 P35580 MYH10 Myosin-10 1 QLHLEGASLELS(0.998)DDDT(0.002)ESK;QLHLEGASLELS(0.999)DDDT(0.001)ESK 168.86 1.18E-12 67107000 5412.3 5428 10580.9 6936.1 6047.7 4514.1 4305.8 6975.9 3863.3 9055.9 TRUE FALSE 5488.088898 6020.647396 7909.620932 6491.249591 6871.499128 5314.612254 5122.803072 6383.253753 4234.387227 7210.302609 0.761145433 0.835006202 1.096988762 0.900274225 0.953011198 0.737085881 0.710483783 0.885296235 0.587269003 1 12.81584409 -7.262108929 24.97223903 0.772261543 0.915085926 0.185208046 0.129913242 93.16108283 3474575.829 0.04345002 0.040623179 5.47E-08 7.262108929 0.142824383 QLHVLVPQS(ph)PPTDLPGLTR ddPTM_K562_Paclitaxel_30min_R1 2 QLHVLVPQSPPTDLPGLTR 19 0 O95402 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 QLHVLVPQS(1)PPTDLPGLTR;QLHVLVPQS(0.999)PPT(0.001)DLPGLTR 153.25 6.29E-12 171449000 6275 5427.4 7032.8 6325.4 5541.3 5489.6 6114.7 6643.1 6175.2 7943.8 TRUE FALSE 6362.86936 6019.981886 5257.282659 5919.717155 6296.118875 6463.103482 7274.932404 6078.72719 6768.355552 6324.8492 1.006011236 0.951798485 0.831210752 0.935945976 0.995457548 1.021858906 1.150214365 0.961086502 1.070121253 1 12.62681537 -6.963734768 2.497488024 1.044513209 0.925279683 0.415371432 0.061103879 0.280481764 3.542589711 0.021601336 0.024101438 1.09E-07 6.963734768 -0.119233526 QLLAEQVSSHIT(ph)SSPLHSR ddPTM_K562_Paclitaxel_30min_R1 2 QLLAEQVSSHITSSPLHSR 19 0 H0YEW0;H3BU86;O14662-5;O14662 H0YEW0 STX16;STX16-NPEPL1 Syntaxin-16 1 QLLAEQVSSHIT(0.373)S(0.373)S(0.249)PLHS(0.004)R;QLLAEQVSSHIT(0.43)S(0.136)S(0.43)PLHS(0.003)R 181.88 1.06E-15 79418000 3773.6 3615.8 4000.5 3875 3128.3 3262.27 3434.8 3960.6 3590.2 4365.1 TRUE FALSE 3826.442043 4010.585272 2990.524297 3626.474844 3554.427423 3840.78778 4086.535369 3624.122309 3935.054751 3475.490224 1.100979084 1.153962467 0.860461145 1.043442683 1.022712537 1.105106771 1.175815527 1.04276579 1.132230131 1 11.76300077 -7.264049988 24.34990172 1.099146001 1.033474446 0.093837252 0.083210571 367.7821069 3430392.115 0.029187387 0.026907655 5.44E-08 7.264049988 -0.065671555 QLLDS(ph)DEEQEEDEGR ddPTM_K562_Paclitaxel_30min_R1 1 QLLDSDEEQEEDEGR 15 0 Q9UNS1-2;Q9UNS1 Q9UNS1-2 TIMELESS Protein timeless homolog 1 QLLDS(1)DEEQEEDEGR 165.66 3.29E-05 49550000 656.23 567.81 828.06 593.15 687.16 497.94 484.36 695.35 492.48 779.39 TRUE FALSE 665.4192446 629.805416 619.0060117 555.1080138 780.7628257 586.2426676 576.2647815 636.2756773 539.7849045 620.5498902 1.072305797 1.014915039 0.99751208 0.894542119 1.258178977 0.944714804 0.9286357 1.025341697 0.869849327 1 9.277403393 QLLDS(ph)DEEQEEDEGRNR ddPTM_K562_Paclitaxel_30min_R1 1 QLLDSDEEQEEDEGRNR 17 1 Q9UNS1-2;Q9UNS1 Q9UNS1-2 TIMELESS Protein timeless homolog 1 QLLDS(1)DEEQEEDEGRNR 81.017 0.010378 67618000 411.09 510.13 532.56 605.55 334.72 385.59 582.81 538.52 364.4 470.14 TRUE FALSE 416.8465283 565.8277185 398.1086414 566.7127333 380.3145309 453.9689725 693.395155 492.7693647 399.4022482 374.3252099 1.113594589 1.511593939 1.063536815 1.513958233 1.016000314 1.212766227 1.852387006 1.316420459 1.066992651 1 8.548148403 -4.935311831 11.93527097 1.301809808 8.78E-05 0.032644452 0.26172184 368157.7033 2343127.724 0.064273006 10877633.08 1.16E-05 4.935311831 -1.301722056 QLLFPAEEDNGAGPPRDGDGVPGGGPLS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 2 QLLFPAEEDNGAGPPRDGDGVPGGGPLSPAR 31 1 M0QZR4;Q92888-2;Q92888;Q92888-3 M0QZR4 ARHGEF1 Rho guanine nucleotide exchange factor 1 1 QLLFPAEEDNGAGPPRDGDGVPGGGPLS(1)PAR;QLLFPAEEDNGAGPPRDGDGVPGGGPLS(1)PAR 53.545 0.0031236 86753000 2023.82 2002.37 2413.43 2243.2 1965.18 1866.35 1943.33 2471.3 2162.65 2458.48 TRUE FALSE 2052.159724 2220.995528 1804.129748 2099.331192 2232.870787 2197.320968 2312.066723 2261.34764 2370.382195 1957.440427 1.048389364 1.134642719 0.921677985 1.07248791 1.140709447 1.122548067 1.181168372 1.155257452 1.21096007 1 10.93475269 -6.676861941 4.136395643 1.144856814 1.038350968 0.283909851 0.071064513 0.259587815 8.338314793 0.021002905 0.027152719 2.10E-07 6.676861941 -0.106505846 QLMEQDASSS(ph)PSAQVIGLK ddPTM_K562_Paclitaxel_30min_R1 1 QLMEQDASSSPSAQVIGLK 19 0 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3;Q9H4L5-6;Q9H4L5-2;Q9H4L5-8;Q9H4L5-4 Q9H4L5-5;Q9H4L5-6 OSBPL3 Oxysterol-binding protein-related protein 3 1 QLMEQDAS(0.069)S(0.174)S(0.757)PSAQVIGLK 241.79 1.24E-57 15531000 1192.3 1267.3 2274.8 1540.1 1253.3 1033 1071.7 1721.1 1147 1658.8 TRUE FALSE 1208.995879 1405.6681 1700.498606 1441.324879 1424.020679 1216.188046 1275.04948 1574.881812 1257.174475 1320.735649 0.915395809 1.064306926 1.287538961 1.091304592 1.078202651 0.920841386 0.965408544 1.19242773 0.951874416 1 10.36712602 -7.020968412 22.61252823 1.013807567 1.099812051 0.119148974 0.108397618 523.2037614 564227.323 0.037169197 0.037646952 9.53E-08 7.020968412 0.086004484 QLPFRGDDGIFDDNFIEER ddPTM_K562_Paclitaxel_30min_R1 2 QLPFRGDDGIFDDNFIEER 19 1 O60493-4;O60493;O60493-2 O60493-4 SNX3 Sorting nexin-3 0 ; 119.68 0.0005285 17880500 995.73 951.44 919 1115.7 896.4 886.68 1123.18 1305.93 1029.62 1102.37 FALSE TRUE 1009.673292 1055.321437 686.987084 1044.143996 1018.504856 1043.920248 1336.297542 1194.983095 1128.519601 877.7063889 1.15035427 1.202362715 0.78270717 1.189627886 1.160416364 1.189372963 1.522488111 1.361483875 1.285759812 1 9.777594599 -7.156287734 1.807905414 1.31809025 1.069835611 0.22380559 0.1656235 0.451183452 2.920573635 0.066040408 0.065055103 6.98E-08 7.156287734 -0.248254639 QLQSEQPQTAAARS(ph) ddPTM_K562_Paclitaxel_30min_R1 1 QLQSEQPQTAAARS 14 1 G3V126;Q9UI12-2;Q9UI12 G3V126 ATP6V1H V-type proton ATPase subunit H 1 QLQSEQPQTAAARS(1) 152.94 1.95E-30 0 1253.7 1123.4 1342.4 1353.4 1059.8 1066.2 932.66 1051 819.13 1255.3 TRUE FALSE 1271.255668 1246.056611 1003.494517 1266.598982 1204.162703 1255.2756 1109.627366 961.7109899 897.8110965 999.469171 1.271930846 1.246718405 1.004027484 1.267271686 1.204802247 1.25594229 1.110216701 0.962221765 0.898287934 1 9.965018257 -8.135259358 2.910092052 0.943641945 1.202948939 0.685369577 0.077001546 0.160288248 2.585831944 0.04339596 0.02239897 7.32E-09 8.135259358 0.259306993 QLS(ph)ADSAEAHSLNVNR ddPTM_K562_Paclitaxel_30min_R1 2 QLSADSAEAHSLNVNR 16 0 H0Y4E8;Q9Y2K2-7;Q9Y2K2 H0Y4E8 SIK3 Serine/threonine-protein kinase SIK3 1 QLS(1)ADSAEAHSLNVNR;QLS(0.996)ADS(0.004)AEAHSLNVNR 174.91 2.47E-09 49019000 1792.54 1846.22 2437.6 1920.4 1707.19 1438.33 1609.62 2090.7 2436.3 1933.75 TRUE FALSE 1817.64109 2047.796543 1822.197732 1797.234139 1939.738181 1693.39763 1915.036992 1913.081985 2670.317501 1539.650689 1.180554202 1.330039702 1.183513732 1.167299929 1.259856015 1.099858327 1.243812643 1.24254287 1.734365802 1 10.58838736 -8.551898771 24.99971301 1.407606747 1.211490065 0.103766259 0.175073381 346.4231891 298424.9155 0.107218226 0.04052592 2.81E-09 8.551898771 -0.196116682 QLS(ph)ALHR ddPTM_K562_Paclitaxel_30min_R1 1 QLSALHR 7 0 E7EX53;A0A2R8Y738;A0A2R8YEM3;E7EQV9;E7ENU7;P61313-2;P61313 E7EX53 RPL15 Ribosomal protein L15;60S ribosomal protein L15 1 QLS(1)ALHR 85.862 0.020047 9645700 4934.6 4675.8 5983.8 5260.8 4769.5 4480.9 4159.8 4590.7 3975.4 5374.1 TRUE FALSE 5003.699625 5186.319657 4473.115683 4923.395834 5419.186648 5275.5247 4949.100334 4200.691381 4357.254933 4278.85547 1.169401411 1.212081056 1.045400041 1.150633825 1.266503785 1.232928931 1.156641155 0.981732477 1.018322531 1 12.06300923 -8.216679986 5.382620037 0.999651551 1.17830207 0.675917987 0.055988213 0.126240004 9.126481022 0.030366393 0.016785377 6.07E-09 8.216679986 0.178650519 QLS(ph)LPLTQSK ddPTM_K562_Paclitaxel_30min_R1 1 QLSLPLTQSK 10 0 Q9C0I1-3;Q9C0I1-2;Q9C0I1 Q9C0I1-3 MTMR12 Myotubularin-related protein 12 1 QLS(0.729)LPLT(0.268)QS(0.003)K 124.38 0.0019167 17901000 2409.6 1789.8 3484.6 2125.9 1559.6 2153.1 1756 2660.8 1626.3 3134.3 TRUE FALSE 2443.341834 1985.216417 2604.869633 1989.554289 1772.043924 2534.922054 2089.191833 2434.748432 1782.513382 2495.52794 0.97908815 0.795509593 1.043815055 0.797247852 0.710087792 1.015785884 0.837174291 0.975644629 0.714283079 1 11.28512934 -11.64002843 6.414787651 1.000608936 0.875916885 0.094453068 0.116671753 0.000965316 5.42E-05 0.107324603 0.025905005 2.29E-12 11.64002843 -0.124692051 QLS(ph)PQSK ddPTM_K562_Paclitaxel_30min_R1 1 QLSPQSK 7 0 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 QLS(0.977)PQS(0.023)K 136.52 2.57E-05 197620000 5759.5 5143.5 9752.1 6259.9 4944.8 4507.6 4645.5 5794.4 5591 6506.3 TRUE FALSE 5840.15077 5705.084724 7290.061743 5858.418032 5618.365476 5306.95957 5526.959374 5302.129552 6128.040531 5180.312489 1.127374224 1.10130127 1.407262932 1.130900509 1.084561113 1.024447769 1.066916211 1.023515389 1.182948045 1 12.33882341 -6.516860673 17.57996925 1.067157774 1.212272776 0.357169943 0.089158786 6.228245255 18192.96291 0.026094474 0.035235948 3.04E-07 6.516860673 0.145115002 QLS(ph)SGVSEIR ddPTM_K562_Paclitaxel_30min_R1 3 QLSSGVSEIR 10 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 1 QLS(0.937)S(0.061)GVS(0.002)EIR;QLS(0.935)S(0.065)GVSEIR;QLS(0.781)S(0.211)GVS(0.008)EIR 120.55 0.0027202 35099300 3870.7 4143.92 4529.79 4000.1 3569.96 3775.47 3711.42 3872.12 3336.7 4445.3 TRUE FALSE 3924.901742 4596.367199 3386.188491 3743.55149 4056.248992 4444.996594 4415.64257 3543.159237 3657.204944 3539.34542 1.108934358 1.298648946 0.956727329 1.057695999 1.146044963 1.25588098 1.247587349 1.001077549 1.033299808 1 11.78926685 -8.286713546 24.48433925 1.012891463 1.151136849 0.316002764 0.09544074 834.6749641 808585.2293 0.055644995 0.026748381 5.17E-09 8.286713546 0.138245386 QLS(ph)TSSDSPAPASSSSQVTASTSQQPVRR ddPTM_K562_Paclitaxel_30min_R1 2 QLSTSSDSPAPASSSSQVTASTSQQPVRR 29 1 A0A3B3IT55;A0A0G2JQF4;A0A0G2JNT7;Q7Z3B3-4;Q7Z3B3-2;Q7Z3B3;A0A1W2PQT4;A0A1W2PPV8 A0A3B3IT55 KANSL1 KAT8 regulatory NSL complex subunit 1 1 QLS(0.397)T(0.397)S(0.146)S(0.055)DS(0.005)PAPASSSSQVTASTSQQPVRR;QLS(0.915)T(0.077)S(0.007)SDSPAPASSSSQVTASTSQQPVRR 132.02 9.66E-19 50021000 870.67 734.41 933.09 842.28 652.5 773.96 747.44 876.38 728.22 832.53 TRUE FALSE 882.8620662 814.5953674 697.5198892 788.2599307 741.3815469 911.2109391 889.2628381 801.9260488 798.1687848 662.859929 1.331898381 1.22891026 1.052288513 1.189180242 1.118458839 1.374665897 1.341554677 1.209797144 1.204128881 1 9.372560232 -9.360621814 2.400558075 1.000035739 1.227759842 0.344875747 0.094812794 3.565360285 22.11547921 0.098940198 0.026839726 4.36E-10 9.360621814 0.227724103 QLSLPLT(ph)QSK ddPTM_K562_Paclitaxel_30min_R1 1 QLSLPLTQSK 10 0 Q9C0I1-3;Q9C0I1-2;Q9C0I1 Q9C0I1-3 MTMR12 Myotubularin-related protein 12 1 QLS(0.002)LPLT(0.949)QS(0.049)K 104.43 0.017363 15425000 3275.8 2660.3 4588 2993.2 2489.3 2434.7 2417.8 3555.6 2263.3 4548.8 TRUE FALSE 3321.671307 2950.760551 3429.702656 2801.229549 2828.384804 2866.45986 2876.564928 3253.529587 2480.700078 3621.752063 0.917144865 0.814732897 0.946973342 0.773445973 0.780943796 0.791456679 0.794246784 0.898330292 0.684944754 1 11.82247207 -6.273744258 24.86972574 0.8097951 0.885128625 0.135455245 0.084935899 1286.158175 2599486.514 0.022185611 0.033163134 5.32E-07 6.273744258 0.075333525 QLSPAT(ph)QLAIQR ddPTM_K562_Paclitaxel_30min_R1 2 QLSPATQLAIQR 12 0 G5E9D9;A0A0C4DFZ6;Q9H972-2;Q9H972 G5E9D9 C14orf93 Uncharacterized protein C14orf93 1 QLS(0.055)PAT(0.945)QLAIQR;QLS(0.004)PAT(0.996)QLAIQR 132.31 0.0015297 28609000 1416.47 1654.8 2104.7 2198.13 1615.65 1354.61 1472.86 2027.37 1282.49 1994.3 TRUE FALSE 1436.30495 1835.47666 1573.342454 2057.15178 1835.728883 1594.831064 1752.327496 1855.132264 1405.678895 1587.860565 0.904553575 1.155943223 0.99085681 1.295549386 1.156102068 1.004389868 1.103577691 1.168321895 0.885265952 1 10.63286852 -8.763514963 24.99997074 0.942632953 1.101476755 0.249158049 0.107289684 75.14005021 904938.3316 0.086133908 0.026505061 1.72E-09 8.763514963 0.158843803 QLSS(ph)GVSEIR ddPTM_K562_Paclitaxel_30min_R1 5 QLSSGVSEIR 10 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 1 QLS(0.044)S(0.956)GVSEIR;QLS(0.448)S(0.548)GVS(0.004)EIR;QLS(0.059)S(0.782)GVS(0.158)EIR;QLS(0.035)S(0.941)GVS(0.023)EIR;QLS(0.092)S(0.848)GVS(0.059)EIR 140.63 0.00091432 9862010000 15619.1 13292.6 16441.7 14491 12579.3 12067.6 11857.2 13709.1 11261.1 15647.2 TRUE FALSE 15837.81559 14743.93102 12290.78949 13561.61212 14292.81363 14207.61942 14107.0418 12544.42639 12342.77897 12458.29205 1.271267002 1.183463268 0.986554934 1.088561102 1.147253056 1.140414702 1.132341556 1.006913816 0.990728016 1 13.60481868 -5.556150149 5.600589986 1.071336757 1.252271398 0.55109252 0.061604477 0.126736248 10.7186812 0.017064372 0.049624679 2.78E-06 5.556150149 0.18093464 QLSS(ph)TSPLAPYPTSQMVSSDR ddPTM_K562_Paclitaxel_30min_R1 1 QLSSTSPLAPYPTSQMVSSDR 21 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 QLS(0.067)S(0.647)T(0.215)S(0.072)PLAPYPTSQMVSSDR 111.09 8.55E-05 8381200 646.85 490.61 666.02 438.05 529.3 793 592.85 784.23 643.32 920.23 TRUE FALSE 655.9078957 544.1764589 497.8750138 409.9554336 601.3996211 933.6274157 705.3401926 717.6047665 705.1137604 732.6866209 0.895209326 0.742713793 0.679519729 0.55952357 0.820814253 1.274252032 0.962676501 0.979415682 0.962367457 1 9.517052462 -7.012218132 24.40106707 1.031849665 0.714591888 0.634803592 0.11437879 281.5984469 562386.6631 0.037675032 0.039667861 9.72E-08 7.012218132 -0.317257776 QLSSGVS(ph)EIR ddPTM_K562_Paclitaxel_30min_R1 1 QLSSGVSEIR 10 0 P04792;F8WE04 P04792 HSPB1 Heat shock protein beta-1 1 QLS(0.048)S(0.436)GVS(0.516)EIR 121.29 0.0025381 279220000 1813.7 1504.5 1948 1505.9 1414.5 1498.2 1414.7 1486 1129 1486.3 TRUE FALSE 1839.097396 1668.766398 1456.203307 1409.318314 1607.178848 1763.884734 1683.13194 1359.755025 1237.445495 1183.391244 1.554090758 1.410156114 1.230534124 1.190914941 1.358112844 1.490533873 1.422295414 1.149032521 1.045677413 1 10.20871141 -8.456805371 3.20397151 1.03101998 1.370689271 0.66943542 0.103381786 0.178261538 3.514930014 0.081059066 0.031395716 3.49E-09 8.456805371 0.339669291 QLSSSSS(ph)YSGDISR ddPTM_K562_Paclitaxel_30min_R1 1 QLSSSSSYSGDISR 14 0 A0A0A0MS99;I3L4X2;P33527-8;P33527-6;P33527-7;P33527-5;P33527-4;P33527-2;P33527-3;P33527;P33527-9 A0A0A0MS99 ABCC1 Multidrug resistance-associated protein 1 1 QLS(0.003)S(0.003)S(0.013)S(0.051)S(0.767)YS(0.162)GDISR 266.44 5.10E-89 31894000 1600.1 1517.7 1897.1 1319.3 1412.6 1165.9 1518.1 1662.7 1351 1261.3 TRUE FALSE 1622.506337 1683.407619 1418.153642 1234.686003 1605.020036 1372.655995 1806.15155 1521.443257 1480.769586 1004.246368 1.615645711 1.676289477 1.412157104 1.229465242 1.598233349 1.36685184 1.798514397 1.515009967 1.474508282 1 9.971897528 -9.320281626 3.001851781 1.000020843 1.523122006 0.510158038 0.153800777 2.91213535 26.27056127 0.153159796 0.040816338 4.78E-10 9.320281626 0.523101162 QLSSTS(ph)PLAPYPTSQMVSSDR ddPTM_K562_Paclitaxel_30min_R1 2 QLSSTSPLAPYPTSQMVSSDR 21 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 QLSS(0.001)T(0.032)S(0.967)PLAPY(0.001)PTSQMVSSDR;QLSST(0.001)S(0.999)PLAPYPTSQMVSSDR 221.81 2.91E-44 83053000 2130.7 2295.53 2866.3 2896.3 2222.9 2429.7 2346.5 2461.1 2194.27 2665.4 TRUE FALSE 2160.536374 2546.163728 2142.667115 2710.544281 2525.696614 2860.57318 2791.736125 2252.014193 2405.039438 2122.190017 1.018069238 1.19978122 1.009649041 1.277239201 1.190136884 1.347934519 1.315497718 1.061174624 1.133281854 1 11.05133812 -5.257318321 23.76709439 1.181428664 1.018069111 0.128590709 0.115971881 429.6598699 2477748.28 0.029435348 0.218371599 5.53E-06 5.257318321 -0.163359553 QLSSTSPLAPY(ph)PTSQMVSSDR ddPTM_K562_Paclitaxel_30min_R1 1 QLSSTSPLAPYPTSQMVSSDR 21 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 QLS(0.034)S(0.216)T(0.069)SPLAPY(0.652)PT(0.023)S(0.005)QMVSSDR 162.94 8.36E-43 0 1035.2 880.16 1182.4 1027.1 797.15 934.58 865.13 964.37 890.03 1069.7 TRUE FALSE 1049.695994 976.2588453 883.8884963 961.2264031 905.7353259 1100.314641 1029.283901 882.4407491 975.5213583 851.6945528 1.232479403 1.146254654 1.03779987 1.128604615 1.063450885 1.291912267 1.208512955 1.036100027 1.145388749 1 9.734192313 -9.293420783 1.107957354 1.002009045 1.147368808 0.231441423 0.079397262 1.645278102 3.65134325 0.079565022 0.025037494 5.09E-10 9.293420783 0.145359764 QLST(ph)SSDSPAPASSSSQVTASTSQQPVRR ddPTM_K562_Paclitaxel_30min_R1 1 QLSTSSDSPAPASSSSQVTASTSQQPVRR 29 1 A0A3B3IT55;A0A0G2JQF4;A0A0G2JNT7;Q7Z3B3-4;Q7Z3B3-2;Q7Z3B3;A0A1W2PQT4;A0A1W2PPV8 A0A3B3IT55 KANSL1 KAT8 regulatory NSL complex subunit 1 1 QLS(0.174)T(0.245)S(0.245)S(0.102)DS(0.034)PAPAS(0.026)S(0.001)SS(0.034)QVT(0.024)AS(0.038)T(0.038)S(0.038)QQPVRR 82.948 3.70E-06 41583000 784.6 678.17 650.56 831.87 509.89 740.86 541.44 822.92 772.57 525.32 TRUE FALSE 795.5868207 752.214894 486.318082 778.5175815 579.3456505 872.2411188 644.1754135 753.0078095 846.7788004 418.2594956 1.902136901 1.798440685 1.162718568 1.861326735 1.385134484 2.085406615 1.540133387 1.800336435 2.02452977 1 8.708254484 QLTEMLPSILNQLGADS(ph)LTSLRR ddPTM_K562_Paclitaxel_30min_R1 1 QLTEMLPSILNQLGADSLTSLRR 23 1 P20290;H0Y9Y1;D6RDG3;P20290-2 P20290 BTF3 Transcription factor BTF3 1 QLTEMLPSILNQLGADS(0.965)LT(0.018)S(0.017)LRR 113.79 4.84E-06 12278000 534.68 524 610.3 503.81 367.65 454.5 552.59 654.96 664.29 1057.6 TRUE FALSE 542.1671696 581.2120921 456.2222169 471.4978816 417.7301544 535.0991935 657.4410678 599.3170599 728.0980226 842.0605395 0.643857709 0.690226017 0.541792657 0.559933472 0.496080905 0.635464041 0.780752733 0.711726808 0.864662324 1 9.717780149 -8.639123392 0.808550241 0.993490159 0.588824999 0.805721229 0.064906483 0.270935943 0.368845518 0.067438777 0.026708086 2.30E-09 8.639123392 -0.40466516 QLTSNTVQQHPS(ph)TPKR ddPTM_K562_Paclitaxel_30min_R1 2 QLTSNTVQQHPSTPKR 16 1 O94916-2;O94916;O94916-4;O94916-5 O94916-2 NFAT5 Nuclear factor of activated T-cells 5 1 QLTSNTVQQHPS(0.5)T(0.5)PKR;QLTSNTVQQHPS(0.5)T(0.5)PKR 93.51 0.0031853 19928700 4881.1 3860.7 7093.4 4783.4 3564.8 4098.4 3396.5 4966.6 3532.1 5935.2 TRUE FALSE 4949.450459 4282.224282 5302.58344 4476.614134 4050.386113 4825.193696 4040.968144 4544.656329 3871.373987 4725.602982 1.047369082 0.906175212 1.122096685 0.947310671 0.857115193 1.02107471 0.855122227 0.961709299 0.819233863 1 12.20628271 -6.508028412 24.78608477 0.917504449 1.016875466 0.268500233 0.078062672 815.4268039 1360996.147 0.020816872 0.029664635 3.10E-07 6.508028412 0.099371017 QLVAGNS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 4 QLVAGNSPK 9 0 Q96EU6-2;Q96EU6 Q96EU6-2 RRP36 Ribosomal RNA processing protein 36 homolog 1 QLVAGNS(1)PK;QLVAGNS(1)PK;QLVAGNS(1)PK;QLVAGNS(1)PK 115.92 0.0039116 127454000 18040.7 14456.6 27830.3 19325 15365.6 13375.4 12527.3 18188.9 15431.1 21363.6 TRUE FALSE 18293.32546 16035.02048 20804.19656 18085.581 17458.65486 15747.33939 14904.28978 16643.63941 16913.3261 17009.68659 1.075465169 0.942699349 1.223079358 1.063251865 1.026394858 0.925786569 0.876223656 0.978480075 0.994334964 1 14.05406894 -7.031669557 3.253454406 0.949263218 1.076006443 0.389432879 0.071464357 0.265163666 5.729923375 0.024945153 0.026480425 9.30E-08 7.031669557 0.126743225 QLVHELDEAEYR ddPTM_K562_Paclitaxel_30min_R1 2 QLVHELDEAEYR 12 0 H0YKK6;Q06323-3;Q06323;Q06323-2 H0YKK6 PSME1 Proteasome activator complex subunit 1 0 ; 107.09 0.014368 15992900 3096.96 2825.36 3510.4 2893.38 2809.56 2779.08 3056.88 3272.64 2039.26 3315.72 FALSE TRUE 3140.326995 3133.84236 2624.156104 2707.811557 3192.269638 3271.910818 3636.907022 2994.608805 2235.140035 2639.974444 1.189529316 1.187072991 0.994008147 1.025696125 1.20920475 1.239372156 1.377629632 1.134332498 0.846652148 1 11.36630825 -8.675502077 6.304359939 0.92582795 1.171942276 0.461626421 0.106835022 0.193229914 11.12235441 0.083517354 0.030325851 2.11E-09 8.675502077 0.246114326 QLVIYEEIS(ph)DPEEDDE ddPTM_K562_Paclitaxel_30min_R1 5 QLVIYEEISDPEEDDE 16 0 Q16384;Q99909;Q7RTT5;Q7RTT3;Q16385 Q16384 SSX1;SSX3;SSX7;SSX9;SSX2 Protein SSX1;Protein SSX3;Protein SSX7;Protein SSX9;Protein SSX2 1 QLVIYEEIS(1)DPEEDDE;QLVIYEEIS(1)DPEEDDE;QLVIYEEIS(1)DPEEDDE;QLVIYEEIS(1)DPEEDDE;QLVIYEEIS(1)DPEEDDE 166.64 1.13E-07 86356700 14081.8 14737.64 16729.79 15912.11 13851.648 13927.023 14030 17236.49 13929.64 17136.73 TRUE FALSE 14278.98865 16346.74537 12506.1476 14891.57848 15738.47697 16396.78498 16692.11926 15772.14259 15267.64416 13644.25502 1.046520211 1.198068004 0.916587061 1.091417484 1.153487453 1.201735453 1.223380773 1.155954837 1.118979683 1 13.736006 -6.674117991 4.475910485 1.157152165 1.059170315 0.165748791 0.085188918 0.332093986 11.99868721 0.025302792 0.032700578 2.12E-07 6.674117991 -0.09798185 QLVNNKDTT(ph)SFEDISPQGVSDDSSTGSR ddPTM_K562_Paclitaxel_30min_R1 1 QLVNNKDTTSFEDISPQGVSDDSSTGSR 28 1 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y7B1;A0A2R8Y820;H7C2C6;A0A2R8Y5D7;A0A2R8Y802;A0A2R8YCU9;A0A2R8Y885;A0A2R8Y7D4;A0A2R8YDS8;H0Y470;H0Y7U8 Q3V6T2 CCDC88A Girdin 1 QLVNNKDT(0.047)T(0.476)S(0.476)FEDIS(0.001)PQGVSDDSSTGSR 90.268 1.53E-05 20219000 435.54 420.95 1007.4 702.21 552.76 350.44 393.56 495.44 565.73 840.31 TRUE FALSE 441.6389038 466.9107446 753.0694106 657.1733936 628.0552703 412.5856136 468.2359555 453.3492796 620.0708942 669.0543607 0.660094201 0.697866679 1.125572831 0.98224215 0.938720838 0.616669792 0.699847401 0.677597078 0.926787016 1 9.385979625 -7.229954918 24.54798283 0.758759191 0.88995399 0.067489788 0.165173363 1230.863504 959687.0885 0.057211679 0.057205731 5.89E-08 7.229954918 0.1311948 QLVNNKDTTS(ph)FEDISPQGVSDDSSTGSR ddPTM_K562_Paclitaxel_30min_R1 1 QLVNNKDTTSFEDISPQGVSDDSSTGSR 28 1 Q3V6T2;Q3V6T2-3;Q3V6T2-2;Q3V6T2-4;Q3V6T2-5;A0A2U3TZV9;A0A2R8Y7B1;A0A2R8Y820;H7C2C6;A0A2R8Y5D7;A0A2R8Y802;A0A2R8YCU9;A0A2R8Y885;A0A2R8Y7D4;A0A2R8YDS8;H0Y470;H0Y7U8 Q3V6T2 CCDC88A Girdin 1 QLVNNKDT(0.021)T(0.082)S(0.896)FEDIS(0.001)PQGVSDDSSTGSR 97.388 1.25E-07 31814000 845.46 885.11 1242.1 996.08 805.85 624.94 881.9 1081.9 655.58 840.85 TRUE FALSE 857.2990485 981.749303 928.5164929 932.1958871 915.6204132 735.7643344 1049.235921 989.985842 718.5513882 669.4843084 1.280536433 1.466426159 1.386913003 1.392408867 1.367650297 1.099001612 1.567230042 1.47872897 1.073290859 1 9.386906431 -8.855167498 5.555328458 1.009364034 1.37935508 0.570643207 0.119508036 0.149650738 6.722848973 0.116051721 0.030329015 1.40E-09 8.855167498 0.369991047 QLVRGEPNVS(ph)YICSR ddPTM_K562_Paclitaxel_30min_R1 1 QLVRGEPNVSYICSR 15 1 A8MT37;A0A3B3ITW1;P49841;P49841-2;P49840 A8MT37 GSK3A;GSK3B Glycogen synthase kinase-3 beta;Glycogen synthase kinase-3 alpha 1 QLVRGEPNVS(0.679)Y(0.32)ICSR 193.62 7.26E-100 0 952.71 941.41 1097.3 849.27 810.14 679.59 688.81 800.57 3575.5 1000.7 TRUE FALSE 966.0508794 1044.196327 820.2730438 794.8016234 920.4947838 800.1057446 819.5081017 732.5565815 3918.942751 796.7567907 1.212479003 1.310558428 1.02951497 0.997546093 1.155302088 1.004203232 1.028554901 0.919423079 4.918618575 1 9.6379956 -8.69533418 24.99999977 2.959488015 1.083275806 0.419612963 0.883045245 40.75893321 15413.98978 0.529769084 0.200233661 2.02E-09 8.69533418 -1.876212209 QLVRGEPNVSY(ph)ICSR ddPTM_K562_Paclitaxel_30min_R1 1 QLVRGEPNVSYICSR 15 1 A8MT37;A0A3B3ITW1;P49841;P49841-2;P49840 A8MT37 GSK3A;GSK3B Glycogen synthase kinase-3 beta;Glycogen synthase kinase-3 alpha 1 QLVRGEPNVS(0.099)Y(0.901)ICSR 143.64 1.64E-05 44741000 679.78 538.78 807.52 681.34 487.81 569.46 459.71 467.78 2615.8 493.77 TRUE FALSE 689.2990173 597.6058224 603.6515887 637.641902 554.2579807 670.4457354 546.9375727 428.0391692 2867.059278 393.139403 1.753319591 1.520086305 1.535464479 1.621923158 1.409825564 1.705363874 1.391205177 1.088771988 7.292729388 1 8.618897157 -8.664782068 22.45786529 4.166888413 1.50864706 0.357162779 1.418224783 5.724625078 1319.925104 0.849651184 0.321136597 2.16E-09 8.664782068 -2.658241353 QLVT(ph)HRDRGS(ph)CTHR ddPTM_K562_Paclitaxel_30min_R1 1 QLVTHRDRGSCTHR 14 2 Q8N9H6 Q8N9H6 C8orf31 Uncharacterized protein C8orf31 2 QLVT(1)HRDRGS(0.619)CT(0.381)HR 79.875 0.028677 27523000 0 0 0 0 0 0 0 55.084 0 0 TRUE FALSE 0 0 0 0 0 0 0 50.40427038 0 0 0 QMELVSVEAQSS(ph)PGLHMR ddPTM_K562_Paclitaxel_30min_R1 1 QMELVSVEAQSSPGLHMR 18 0 H0Y702;Q5T0C7;A0A0A0MR87;E9PSF2;Q15468;Q15468-2 H0Y702 STIL SCL-interrupting locus protein 1 QMELVSVEAQS(0.248)S(0.752)PGLHMR 143.58 1.59E-10 12580000 3243.8 3066.3 3221.1 3282.5 2877.4 2398.8 2472.9 2766.3 2901.1 3322.9 TRUE FALSE 3289.223208 3401.089004 2407.893467 3071.975142 3269.350595 2824.193499 2942.119866 2531.285548 3179.763617 2645.691156 1.243237783 1.285520041 0.910118878 1.161123865 1.235726471 1.067469078 1.112042068 0.956757762 1.201865006 1 11.36942894 -5.711992855 24.99997636 1.088157692 1.264379739 0.35188373 0.099326744 124.0698924 62727.41337 0.02480254 0.065621143 1.94E-06 5.711992855 0.176222047 QMEQISQFLQAAER ddPTM_K562_Paclitaxel_30min_R1 1 QMEQISQFLQAAER 14 0 X6RJP6;P37802;P37802-2 X6RJP6 TAGLN2 Transgelin-2 0 182.25 6.94E-06 11046000 524.91 655.11 821.62 571.19 648.55 503.72 754.2 633.79 669.01 992.31 FALSE TRUE 532.2603595 726.6371252 614.1918693 534.55643 736.89349 593.0476694 897.3055128 579.9455835 733.2713997 790.0766773 0.673681903 0.919704563 0.77738261 0.676588039 0.932686043 0.750620397 1.13571953 0.734037088 0.928101564 1 9.625848864 -7.205601212 1.732307194 0.918196556 0.781155467 0.222128772 0.128297587 0.632204441 3.754904056 0.051115269 0.048555614 6.23E-08 7.205601212 -0.13704109 QMGGNT(ph)NTGAALNFT(ph)LSLLQK ddPTM_K562_Paclitaxel_30min_R1 1 QMGGNTNTGAALNFTLSLLQK 21 0 A6NMZ7-2;A6NMZ7 A6NMZ7-2 COL6A6 Collagen alpha-6(VI) chain 2 QMGGNT(0.95)NT(0.057)GAALNFT(0.967)LS(0.026)LLQK 67.644 0.0063943 22221000 1348 1697.1 1709.6 1808 1522 1253.1 1151.8 1581.7 1212.3 1794.5 TRUE FALSE 1366.876159 1882.395117 1277.990336 1692.042972 1729.322168 1475.319691 1370.348037 1447.324712 1328.746832 1428.779915 0.956673694 1.317484308 0.894462697 1.18425725 1.210348878 1.032573089 0.959103654 1.012979464 0.929987059 1 10.48056799 -7.499123337 7.643652541 0.979054518 1.116608892 0.23985942 0.115344626 0.292741871 76.0761945 0.039724877 0.033757566 3.17E-08 7.499123337 0.137554375 QMGYTEAIEVIQAASS(ph)PVK ddPTM_K562_Paclitaxel_30min_R1 1 QMGYTEAIEVIQAASSPVK 19 0 P19838-3;P19838;P19838-2 P19838-3 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit 1 QMGYTEAIEVIQAAS(0.248)S(0.752)PVK 135.09 5.83E-15 0 980.68 946.07 1396 1022.4 779.82 856.18 712.66 1121.7 449.23 1281.8 TRUE FALSE 994.4125457 1049.365122 1043.562534 956.8278401 886.0446865 1008.011502 847.8835147 1026.404584 492.3805487 1020.568456 0.974371233 1.0282163 1.022530657 0.937544007 0.868187412 0.987696117 0.830795337 1.005718506 0.48245715 1 9.995157242 -7.445992445 0.750405712 0.811009496 1.003054114 0.191530714 0.140886408 1.094943322 1.304218912 0.101573311 0.083116676 3.58E-08 7.445992445 0.192044618 QMIGY(ph)NLAT(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 QMIGYNLATK 10 0 H0Y852;E9PDQ8;Q96I99;Q96I99-2 H0Y852 SUCLG2 "Succinyl-CoA ligase [GDP-forming] subunit beta, mitochondrial" 2 QMIGY(1)NLAT(1)K 67.207 0.020033 0 1413.7 1669 1591.8 1797.2 1337.1 1695.2 1645.1 1720.5 1904.8 2009.4 TRUE FALSE 1433.496162 1851.227064 1189.930403 1681.935636 1519.235657 1995.819918 1957.249137 1574.332786 2087.764551 1599.883177 0.896000522 1.1571014 0.743760807 1.051286531 0.94959162 1.247478533 1.223370034 0.98402984 1.304948124 1 10.64375085 -7.246241026 24.67038002 1.155429966 0.963631728 0.330503111 0.1368244 804.1433009 1305308.038 0.043004945 0.042843437 5.67E-08 7.246241026 -0.191798238 QMLDDFGPHR ddPTM_K562_Paclitaxel_30min_R1 1 QMLDDFGPHR 10 0 A0A494BZY8;A0A1B0GVZ4;A0A494C0Q8;P06132;A0A494C085 A0A494BZY8 UROD Uroporphyrinogen decarboxylase 0 144.55 0.0011796 10766000 2748.7 2663.7 3264.6 3011.5 2332.5 2797.8 2703.6 2784.2 2746 3578.4 FALSE TRUE 2787.19028 2954.531774 2440.411354 2818.355869 2650.22599 3293.950547 3216.593986 2547.664832 3009.765569 2849.120116 0.978263522 1.036997969 0.856549129 0.989202194 0.930191035 1.156129055 1.12897802 0.89419355 1.056384233 1 11.47630073 -7.200223107 24.99999705 1.045640323 0.958686682 0.238677604 0.079359161 385.3353907 157366.1121 0.027107736 0.027107731 6.31E-08 7.200223107 -0.086953641 QMLY(ph)VGS(ph)RLGVAQLR ddPTM_K562_Paclitaxel_30min_R1 1 QMLYVGSRLGVAQLR 15 1 Q9NS98 Q9NS98 SEMA3G Semaphorin-3G 2 QMLY(1)VGS(1)RLGVAQLR 55.173 0.028848 0 352.02 141.09 272.13 201.73 278.87 307.11 170.31 209.98 221.75 0 TRUE FALSE 356.9493661 156.4946833 203.4274158 188.7919407 316.8568153 361.5716465 202.6254334 192.1408883 243.0500783 0 0 QMMEMEGMYS(ph)LDK ddPTM_K562_Paclitaxel_30min_R1 1 QMMEMEGMYSLDK 13 0 H0Y7V4;A0A075B6F3;Q96JB1-2;Q96JB1 H0Y7V4 DNAH8 "Dynein heavy chain 8, axonemal" 1 QMMEMEGMY(0.05)S(0.95)LDK 41.56 0.031121 0 1035.6 864.33 1380.6 1019.3 1051.4 889.86 1217.3 1043.8 1146.5 1210.7 TRUE FALSE 1050.101595 958.7004724 1032.050455 953.9266602 1194.61848 1047.664177 1448.27632 955.1226748 1256.626448 963.9586754 1.089363706 0.994545199 1.070637654 0.989592899 1.239283914 1.086835155 1.502425734 0.990833631 1.303610289 1 9.91282749 -6.762323476 24.99999919 1.197453043 1.035542934 0.206760988 0.144174787 34.70995469 981525.2487 0.041184443 0.049470247 1.73E-07 6.762323476 -0.161910109 QMMS(ph)PVSK ddPTM_K562_Paclitaxel_30min_R1 2 QMMSPVSK 8 0 Q8IY63-2;Q8IY63 Q8IY63-2 AMOTL1 Angiomotin-like protein 1 1 QMMS(1)PVSK;QMMS(1)PVSK 87.184 0.019933 15808600 7279 5979.3 10241.3 7381.3 6064.5 4667 4728.1 7044 6273.9 8265.4 TRUE FALSE 7380.928458 6632.140195 7655.757152 6907.896455 6890.587573 5494.626922 5625.232293 6445.568233 6876.536128 6580.906943 1.121567061 1.007785135 1.163328584 1.049687606 1.047057439 0.834934602 0.854780707 0.979434642 1.044922256 1 12.68407071 -7.069534325 6.86590442 0.935872195 1.081286372 0.48441945 0.070317884 0.228101067 19.09038195 0.024325598 0.024475179 8.52E-08 7.069534325 0.145414177 QMNMS(ph)PPPGNAGPVIMSIEEK ddPTM_K562_Paclitaxel_30min_R1 2 QMNMSPPPGNAGPVIMSIEEK 21 0 Q86U42-2;Q86U42;B4DEH8;G3V4T2;Q92843-2 Q86U42-2 PABPN1 Polyadenylate-binding protein 2 1 QMNMS(1)PPPGNAGPVIMSIEEK;QMNMS(1)PPPGNAGPVIMSIEEK 97.188 0.00047986 51226000 8977.9 8104 16146.9 11193 8895.8 8109.5 8005.9 11898.7 7101.8 14909.5 TRUE FALSE 9103.618299 8988.822126 12070.41539 10475.13108 10107.55857 9547.605962 9524.977731 10887.83117 7783.959622 11870.93572 0.766882958 0.757212602 1.01680404 0.882418314 0.851454242 0.804284194 0.802378006 0.917183904 0.655715759 1 13.53514604 QMPS(ph)ESLDPAFSPR ddPTM_K562_Paclitaxel_30min_R1 1 QMPSESLDPAFSPR 14 0 Q15018 Q15018 FAM175B BRISC complex subunit Abro1 1 QMPS(0.417)ES(0.417)LDPAFS(0.165)PR 97.203 0.0086839 9822600 1921.2 1559.4 1846.9 2030.6 1867.3 1761.6 1634.6 2063.3 1704 1975.3 TRUE FALSE 1948.102727 1729.660566 1380.627253 1900.366405 2121.657874 2073.995026 1944.756817 1888.009786 1867.676814 1572.732776 1.238673701 1.099780326 0.877852407 1.208321232 1.349026298 1.318720547 1.23654625 1.20046445 1.187536015 1 10.61905785 -4.905989522 17.15447357 1.175415412 3.832365956 0.020861904 0.134649995 24133798.68 33185668.25 19.07328546 2453862470 1.24E-05 4.905989522 2.656950543 QMPSESLDPAFS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 QMPSESLDPAFSPR 14 0 Q15018 Q15018 FAM175B BRISC complex subunit Abro1 1 QMPS(0.104)ES(0.023)LDPAFS(0.874)PR 124.5 0.00051558 10724000 1417.1 1577.8 1862.2 1899.6 1521.1 1775.9 1599.8 1873.9 1579.1 2527.4 TRUE FALSE 1436.943772 1750.06954 1392.064579 1777.768158 1728.299572 2090.83093 1903.353698 1714.700498 1730.779611 2012.314493 0.714075149 0.869679936 0.691772873 0.883444494 0.858861564 1.039017975 0.945852999 0.852103637 0.860093995 1 10.97464008 -6.558408902 2.401982306 0.927371443 0.770169985 0.503833645 0.073202213 0.263482016 3.067313695 0.023282427 0.034018431 2.76E-07 6.558408902 -0.157201458 QMS(ph)FDLTK ddPTM_K562_Paclitaxel_30min_R1 2 QMSFDLTK 8 0 Q9ULH0-2;Q9ULH0-4;Q9ULH0;H0Y8E4;E9PH70;A0A1W2PPB7;Q9ULH0-3 Q9ULH0-2 KIDINS220 Kinase D-interacting substrate of 220 kDa 1 QMS(0.789)FDLT(0.211)K;QMS(0.997)FDLT(0.003)K 100.93 0.01401 18889300 5676.1 4836.8 9823.3 6946.1 4887.9 4313.2 4843.2 7003.1 5411.2 7765.9 TRUE FALSE 5755.582912 5364.898181 7343.286422 6500.608236 5553.714733 5078.08546 5762.171917 6408.142943 5930.969938 6183.205317 0.930841306 0.867656483 1.187618079 1.051333071 0.898193485 0.821270716 0.931906935 1.036378806 0.959206372 1 12.5941392 -2.177053929 23.20161689 0.967988148 0.065591973 0 0.100054149 0 0 0.024608705 0 0.006651906 2.177053929 -0.902396176 QMSFDLT(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 QMSFDLTK 8 0 Q9ULH0-2;Q9ULH0-4;Q9ULH0;H0Y8E4;E9PH70;A0A1W2PPB7;Q9ULH0-3 Q9ULH0-2 KIDINS220 Kinase D-interacting substrate of 220 kDa 1 QMS(0.002)FDLT(0.998)K 134.84 0.00023021 33447000 4888.2 3880.7 8221.6 5085.5 4109.4 3724.8 4125.9 5394.1 4213.7 6383.1 TRUE FALSE 4956.649881 4304.40795 6145.955397 4759.338792 4669.169853 4385.340981 4908.767986 4935.837536 4618.444712 5082.220716 0.975292133 0.846954154 1.209305093 0.936468339 0.918726304 0.862878892 0.965870681 0.971197005 0.908745403 1 12.31124332 -6.467747261 24.99999247 0.933517012 1.007281741 0.120455136 0.089582574 653.3763691 296280.126 0.02519144 0.03736478 3.41E-07 6.467747261 0.073764729 QMYIQDRLDSVTR ddPTM_K562_Paclitaxel_30min_R1 1 QMYIQDRLDSVTR 13 1 E9PLF9 E9PLF9 AMICA1 0 96.23 0.022025 6477000 1978.7 2344 1808.1 1989.7 1751.7 1843.9 2381.5 2486.3 2064.7 2955.2 FALSE TRUE 2006.407905 2599.925847 1351.622793 1862.089548 1990.311197 2170.889775 2833.377193 2275.073296 2263.02366 2352.928618 0.852727911 1.104974383 0.574442753 0.791392282 0.845886773 0.922633079 1.204191734 0.966911312 0.961790189 1 11.20024184 -7.527706859 24.97719728 1.035172582 0.837380065 0.325267267 0.135282928 170.0095911 879493.7372 0.05309515 0.041279745 2.97E-08 7.527706859 -0.197792517 QNDTPKGPQPPTVS(ph)PIR ddPTM_K562_Paclitaxel_30min_R1 1 QNDTPKGPQPPTVSPIR 17 1 P46087-2;P46087;P46087-4 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 QNDTPKGPQPPT(0.003)VS(0.997)PIR 115.88 0.00031219 154590000 1263.8 1091.5 1506 1305 995.75 804.93 720.95 1215.8 1477.8 1647.7 TRUE FALSE 1281.497099 1210.673661 1125.791674 1221.303141 1131.388008 947.6730337 857.7464989 1112.510201 1619.749293 1311.897836 0.976826903 0.92284142 0.858139745 0.930943788 0.862405576 0.722368014 0.65382111 0.848015883 1.234661152 1 10.35743966 -8.744575703 24.76439696 1.117330488 0.842553502 0.513829566 0.10514401 155.7223501 228681.3966 0.077150102 0.028982439 1.80E-09 8.744575703 -0.274776986 QNFRPPT(ph)PPYPGPGGGGWGSGSSFR ddPTM_K562_Paclitaxel_30min_R1 2 QNFRPPTPPYPGPGGGGWGSGSSFR 25 1 Q8TAP9 Q8TAP9 MPLKIP M-phase-specific PLK1-interacting protein 1 QNFRPPT(1)PPYPGPGGGGWGSGSSFR;QNFRPPT(0.999)PPY(0.001)PGPGGGGWGSGSSFR 93.679 0.0004523 63613000 3280.3 3095 3424.1 3459.3 2642.6 2756.4 3051.4 3843.3 3412.1 4002.9 TRUE FALSE 3326.234321 3432.922567 2559.643606 3237.435981 3002.56686 3245.208838 3630.387221 3516.787676 3739.847451 3187.106783 1.04365324 1.077128192 0.80312452 1.015791501 0.942097979 1.018230345 1.139085531 1.103442061 1.173430232 1 11.63803164 -7.611153809 4.382456653 1.111974826 0.97482034 0.357032665 0.080460291 0.230407499 8.106887394 0.031757064 0.024260416 2.45E-08 7.611153809 -0.137154486 QNLWFANPGGSNS(ph)MPSQSR ddPTM_K562_Paclitaxel_30min_R1 2 QNLWFANPGGSNSMPSQSR 19 0 M0QZ22;Q5PRF9;M0QX45 M0QZ22 SAMD4B Protein Smaug homolog 2 1 QNLWFANPGGS(0.024)NS(0.8)MPS(0.145)QS(0.031)R;QNLWFANPGGS(0.017)NS(0.982)MPS(0.001)QSR 147.1 2.29E-12 48877000 5073.3 5218.5 5949 4495.6 4246.4 4088.9 4705.9 5684.2 4603.5 6505.7 TRUE FALSE 5144.341852 5788.273478 4447.101374 4207.272338 4824.831572 4814.009004 5598.819959 5201.29173 5045.686744 5179.834769 0.993147867 1.117462957 0.858541164 0.812240646 0.931464378 0.929375013 1.080887752 1.004142403 0.974101872 1 12.33869036 -7.728294319 24.85927166 1.015128273 0.938472924 0.172057371 0.079899555 352.4697941 264356.7932 0.033895265 0.026253398 1.87E-08 7.728294319 -0.076655349 QNPQS(ph)PPQDSSVTSKR ddPTM_K562_Paclitaxel_30min_R1 2 QNPQSPPQDSSVTSKR 16 1 C9JEF4;C9J172;Q9BRX7;A0A2R8YCS4;E7EP63;E7ER52;A6NDI8;Q9UBN7 C9JEF4 HDAC6 Histone deacetylase 6 1 QNPQS(0.999)PPQDSSVTSKR;QNPQS(1)PPQDSSVTSKR 107.91 0.00080319 48811000 2844.4 2184.3 4386 3120.4 1997.76 2519.4 2221.2 2938.3 2807.2 3235.7 TRUE FALSE 2884.230376 2422.789261 3278.700055 2920.27151 2269.888734 2966.180216 2642.661105 2688.673075 3076.844103 2576.262564 1.119540538 0.940427926 1.27265757 1.133530235 0.881078181 1.151350121 1.025773204 1.043633173 1.194305327 1 11.33106392 -11.72584107 2.784979326 0.98613676 1.080451154 0.048688781 0.110896096 39225516.66 30455462.23 3748768.569 0.027865692 1.88E-12 11.72584107 0.094314394 QNPTVGSHCAGLFSTSVLGGSS(ph)SAPNLQDYAR ddPTM_K562_Paclitaxel_30min_R1 1 QNPTVGSHCAGLFSTSVLGGSSSAPNLQDYAR 32 0 A0A087WZV0;O43314-2;O43314;K7ENU7 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 QNPTVGSHCAGLFST(0.001)SVLGGS(0.149)S(0.425)S(0.425)APNLQDYAR 145.24 3.73E-31 17629000 424.65 634.29 527.45 537.45 414.54 363.33 782.84 961.04 893.89 912.67 TRUE FALSE 430.5964102 703.5439272 394.2887241 502.9803625 471.0073662 427.7614741 931.3798033 879.3936534 979.7521285 726.667353 0.592563307 0.968178802 0.542598649 0.692174157 0.648174662 0.588662023 1.281714115 1.210173609 1.348281472 1 9.505151282 -7.763765676 24.9999752 1.22755686 0.679462746 0.78607156 0.137338072 26.40443061 283753.208 0.053617725 0.038107684 1.72E-08 7.763765676 -0.548094114 QNPTVGSHCAGLFSTSVLGGSSS(ph)APNLQDYAR ddPTM_K562_Paclitaxel_30min_R1 1 QNPTVGSHCAGLFSTSVLGGSSSAPNLQDYAR 32 0 A0A087WZV0;O43314-2;O43314;K7ENU7 A0A087WZV0 PPIP5K2 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 2 1 QNPTVGSHCAGLFS(0.049)T(0.049)S(0.06)VLGGS(0.254)S(0.254)S(0.334)APNLQDYAR 54.623 0.0021842 15937000 776.09 725.33 867.08 977.99 600.83 723.01 998.32 1233.5 1054.3 1437.4 TRUE FALSE 786.9576544 804.5239823 648.1749301 915.2660987 682.6732181 851.2256719 1187.746008 1128.706476 1155.570226 1144.457091 0.687625303 0.702974352 0.566360185 0.799738239 0.596503987 0.743781203 1.03782485 0.986237479 1.009710399 1 10.16044766 -7.680191537 4.436132977 1.007793268 0.673837579 0.874498248 0.060817108 0.06671541 2.422369162 0.022973287 0.017218322 2.09E-08 7.680191537 -0.333955689 QNS(ph)DPTSENPPLPTR ddPTM_K562_Paclitaxel_30min_R1 1 QNSDPTSENPPLPTR 15 0 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 QNS(0.9)DPT(0.032)S(0.068)ENPPLPTR 155.63 5.18E-05 24831000 1003.7 1215.3 1423.3 1082.5 732.36 964.99 790.63 1097.5 583.17 1176.9 TRUE FALSE 1017.754897 1347.990564 1063.970312 1013.073295 832.119831 1136.117427 940.6479151 1004.260525 639.1860842 937.047134 1.086129886 1.438551504 1.135450153 1.081133764 0.888023452 1.212444269 1.003842689 1.071728933 0.682127997 1 9.871977808 -6.501242286 0.488384079 0.925063731 1.31571006 0.32641977 0.154115487 1.898618015 0.779004845 0.124012823 0.378610445 3.15E-07 6.501242286 0.390646329 QNS(ph)LTQFMSIPSSVIHPAMVR ddPTM_K562_Paclitaxel_30min_R1 1 QNSLTQFMSIPSSVIHPAMVR 21 0 A0A087WW69;A0A087WTA5;E7ERK9;Q9UI10-3;Q9UI10;Q9UI10-2;H7C2L8 A0A087WW69 EIF2B4 Translation initiation factor eIF-2B subunit delta 1 QNS(0.912)LT(0.088)QFMSIPSSVIHPAMVR 104.26 0.00019914 6386000 427.73 323.81 421.69 490.25 408.74 478.1 302.06 465.28 187.05 474.75 TRUE FALSE 433.7195397 359.1646709 315.2291441 458.8075593 464.417308 562.8843221 359.3743081 425.7515598 205.0169883 377.9956894 1.147419274 0.950181923 0.833949045 1.213790454 1.228631228 1.489128945 0.950736525 1.126339722 0.54237917 1 8.562225972 -8.735284191 24.83409225 0.771189618 1.116231764 0.323319521 0.200407516 214.9241147 204069.3843 0.140457898 0.053049807 1.84E-09 8.735284191 0.345042145 QNSDPTS(ph)ENPPLPTR ddPTM_K562_Paclitaxel_30min_R1 1 QNSDPTSENPPLPTR 15 0 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 QNS(0.063)DPT(0.198)S(0.739)ENPPLPTR 140.96 2.69E-06 22069000 1455.6 1046.6 1733.4 1324.6 1066.7 1334.2 1085.5 1258.8 824.27 1667.1 TRUE FALSE 1475.982891 1160.871327 1295.781732 1239.646085 1212.002599 1570.801637 1291.467958 1151.857083 903.4448164 1327.344105 1.111982104 0.874582049 0.976221408 0.933929702 0.913103539 1.183417044 0.97297148 0.86779086 0.680640998 1 10.37432671 -8.31050591 4.158420773 0.824036672 0.992050586 0.257467775 0.112694038 0.284951175 10.57905008 0.063927573 0.029697313 4.89E-09 8.31050591 0.168013913 QNTAWDTETS(ph)PRGER ddPTM_K562_Paclitaxel_30min_R1 2 QNTAWDTETSPRGER 15 1 Q8NDV7-2;Q8NDV7-6;Q8NDV7-5;Q8NDV7 Q8NDV7-2 TNRC6A Trinucleotide repeat-containing gene 6A protein 1 QNTAWDT(0.003)ET(0.034)S(0.963)PRGER;QNTAWDT(0.077)ET(0.23)S(0.693)PRGER 138.05 8.55E-06 25447000 8801.7 8626.4 10952.2 10073.6 8306.8 8562.9 8529.9 10900.4 6823 12413.7 TRUE FALSE 8924.950956 9568.259525 8187.181655 9427.524384 9438.326795 10081.41009 10148.404 9974.342982 7478.379636 9883.781126 0.902989538 0.968076832 0.828345099 0.953837834 0.954930778 1.019995279 1.026773445 1.009162673 0.756631449 1 13.27084735 -6.498438586 24.06727717 0.966690055 0.904041171 0.105357115 0.07966141 1088.808178 1072195.339 0.022573848 0.033268792 3.17E-07 6.498438586 -0.062648884 QPAPGGGGGGGPS(ph)PCGPGGGGR ddPTM_K562_Paclitaxel_30min_R1 2 QPAPGGGGGGGPSPCGPGGGGR 22 0 D6RF50;D6RA70;Q9H6S0 D6RF50 YTHDC2 Probable ATP-dependent RNA helicase YTHDC2 1 QPAPGGGGGGGPS(1)PCGPGGGGR;QPAPGGGGGGGPS(1)PCGPGGGGR 105.92 0.00010864 9730700 1075.42 829.58 1180.11 926.96 897.91 858.1 839.34 1393.82 779.67 1251.57 TRUE FALSE 1090.479198 920.1563499 882.1766351 867.5089345 1020.220544 1010.271987 998.6003834 1275.406291 854.5607872 996.499347 1.094309998 0.923388814 0.885275678 0.870556451 1.023804528 1.013821022 1.002108417 1.27988673 0.857562817 1 9.960725049 -6.913780449 7.331943719 1.04339462 0.938019284 0.117557151 0.112657637 0.426178391 30.86522208 0.03447834 0.039166326 1.22E-07 6.913780449 -0.105375335 QPAQELS(ph)PTPGGTAHQALK ddPTM_K562_Paclitaxel_30min_R1 4 QPAQELSPTPGGTAHQALK 19 0 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 QPAQELS(0.985)PT(0.015)PGGTAHQALK;QPAQELS(0.995)PT(0.005)PGGTAHQALK;QPAQELS(1)PTPGGTAHQALK;QPAQELS(0.946)PT(0.054)PGGTAHQALK 137.38 4.60E-10 282776000 9160 7712.6 13957.2 10153.1 7965.9 7475.2 6416.7 9484.5 9012.5 11022.8 TRUE FALSE 9288.268261 8554.68775 10433.53224 9501.92561 9050.990444 8800.821763 7634.235328 8678.732525 9878.190894 8776.347309 1.058329614 0.974743529 1.188823992 1.082674292 1.031293558 1.002788683 0.869864769 0.988877516 1.125546944 1 13.0994049 -7.02929307 2.989618863 0.989321147 1.076222019 0.191660511 0.075173026 0.438865428 7.919010264 0.027135872 0.028919304 9.35E-08 7.02929307 0.086900872 QPASAQSTPSTTPHSS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 QPASAQSTPSTTPHSSPK 18 0 A0A087WT18;Q96A73-2;Q96A73 A0A087WT18 KIAA1191 Putative monooxygenase p33MONOX 1 QPASAQSTPSTTPHS(0.242)S(0.758)PK;QPASAQSTPSTTPHS(0.245)S(0.755)PK 170.37 1.29E-10 15309700 4446.8 3976.4 7634.5 5553 3784.5 4093.5 3728.8 5373 5172.7 7284.9 TRUE FALSE 4509.06892 4410.556799 5707.076053 5196.855434 4300.012972 4819.424749 4436.320334 4916.530113 5669.560947 5800.233381 0.777394395 0.76041023 0.983939038 0.895973505 0.741351716 0.830901868 0.76485204 0.847643498 0.977471177 1 12.50189524 -8.759525864 3.919224173 0.997953958 0.824782799 0.478109084 0.068871293 0.197118516 6.31604462 0.06502402 0.018882541 1.74E-09 8.759525864 -0.173171159 QPDAKDGDSYDPY(ph)DFSDTEEEMPQVHTPK ddPTM_K562_Paclitaxel_30min_R1 1 QPDAKDGDSYDPYDFSDTEEEMPQVHTPK 29 1 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 1 QPDAKDGDSYDPY(0.617)DFS(0.191)DT(0.191)EEEMPQVHTPK 75.529 5.85E-05 15465000 1593.3 1037.9 4355.3 2031 1601.7 1279 1133.1 2052.9 2799.7 2509.3 TRUE FALSE 1615.611116 1151.221432 3255.750649 1900.74075 1819.878657 1505.812692 1348.09981 1878.493331 3068.623694 1997.903283 0.808653317 0.576214796 1.629583713 0.95136775 0.910894272 0.75369649 0.674757293 0.940232366 1.535922044 1 10.96427103 -8.63346995 9.124579975 1.265819664 0.905580784 0.196308987 0.293979623 0.446559151 34.07170105 0.204028977 0.076619455 2.33E-09 8.63346995 -0.36023888 QPDAKDGDSYDPYDFS(ph)DTEEEMPQVHTPK ddPTM_K562_Paclitaxel_30min_R1 1 QPDAKDGDSYDPYDFSDTEEEMPQVHTPK 29 1 J3KQ69;A0A499FHX9;P25205;P25205-2;Q7Z6P5 J3KQ69 MCM3 DNA replication licensing factor MCM3 1 QPDAKDGDS(0.002)Y(0.002)DPY(0.094)DFS(0.451)DT(0.451)EEEMPQVHTPK 61.488 0.001006 16951000 1474.1 1096.7 3460 1612.8 1003 972.14 865.81 1456.2 2232.3 1913.8 TRUE FALSE 1494.741948 1216.441415 2586.480207 1509.362227 1139.625581 1144.535379 1030.092928 1332.486721 2446.722389 1523.766509 0.980952094 0.798312213 1.697425551 0.990546923 0.747900399 0.751122546 0.676017567 0.874469095 1.605706894 1 10.57342614 -6.510038114 24.82141468 0.909350245 1.159696163 0.076845596 0.324282831 1349.383273 2608409.306 0.095788492 0.134658769 3.09E-07 6.510038114 0.250345918 QPDISCILGTGGKS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 QPDISCILGTGGKSPR 16 1 G3V1T4;P57740;P57740-2 G3V1T4 NUP107 Nuclear pore complex protein Nup107 1 QPDISCILGT(0.011)GGKS(0.989)PR 72.583 0.025016 101130000 3745.6 3048.8 5208.9 3468.9 3060.6 2586.8 2824 3931.5 2656.5 4715.6 TRUE FALSE 3798.049956 3381.678294 3893.848772 3246.42028 3477.505536 3045.53266 3359.839258 3597.494535 2911.668695 3754.558132 1.01158374 0.900686093 1.037099077 0.864661078 0.926209001 0.811156081 0.89486942 0.958167222 0.775502361 1 11.87442741 -6.278646258 24.80584921 0.886754048 0.974879288 0.268142297 0.069892978 952.4028967 1373004.775 0.018495696 0.027510397 5.26E-07 6.278646258 0.08812524 QPEDDSSQAFISTQNGS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 QPEDDSSQAFISTQNGSPR 19 0 Q5TCQ9-3;Q5TCQ9-2;Q5TCQ9;Q5TCQ9-1 Q5TCQ9-3 MAGI3 "Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3" 1 QPEDDSSQAFIS(0.007)T(0.007)QNGS(0.985)PR 118.05 0.00011056 12542000 481.98 494.29 366.12 675.36 494.14 456.21 409.41 605.94 378.7 603.42 TRUE FALSE 488.729207 548.2582538 273.6884779 632.0454324 561.4502339 537.112438 487.0934102 554.4616148 415.0758271 480.4426728 1.017247707 1.141152285 0.56965897 1.315548073 1.168610254 1.11795323 1.013842937 1.154064046 0.863944547 1 8.908220486 -4.910775792 17.51252289 1.045070573 0.001212581 0 0.19408056 1850.840588 418124.0986 0.046098403 11448.83625 1.23E-05 4.910775792 -1.043857993 QPEYSPES(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 QPEYSPESPR 10 0 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 QPEYS(0.008)PES(0.992)PR;QPEYS(0.33)PES(0.67)PR;QPEYS(0.01)PES(0.99)PR 144.51 0.00057776 260037000 3177.03 3703.52 4631.22 4307.3 4030.8 4303.7 4341.1 5076.2 2780.55 4817.1 TRUE FALSE 3221.518222 4107.882838 3462.011233 4031.049057 4579.863202 5066.900768 5164.801063 4644.945125 3047.634251 3835.372376 0.839949269 1.071051892 0.902653222 1.051018952 1.194111745 1.321097477 1.346623106 1.211080612 0.794612349 1 11.90515094 -6.559115489 3.689729521 1.17332675 0.952542001 0.237332654 0.16027101 0.314854149 9.10715331 0.049998039 0.068771862 2.76E-07 6.559115489 -0.220784749 QPGLRQPS(ph)PSHDGSLSPLQDR ddPTM_K562_Paclitaxel_30min_R1 5 QPGLRQPSPSHDGSLSPLQDR 21 1 Q96A00-2;Q96A00;A0A0B4J2A3 Q96A00-2 PPP1R14A Protein phosphatase 1 regulatory subunit 14A 1 QPGLRQPS(0.953)PS(0.042)HDGS(0.004)LSPLQDR;QPGLRQPS(0.787)PS(0.194)HDGS(0.016)LS(0.002)PLQDR;QPGLRQPS(0.999)PS(0.001)HDGSLSPLQDR;QPGLRQPS(0.998)PS(0.002)HDGSLSPLQDR;QPGLRQPS(0.89)PS(0.11)HDGSLSPLQDR 93.029 0.00043484 1104090000 4065.18 3934.01 5086.93 4367.19 3504.09 3919.95 4093.71 4731.15 3712.34 5424.71 TRUE FALSE 4122.105062 4363.538516 3802.671607 4087.09798 3981.406383 4615.098094 4870.470102 4329.209277 4068.926844 4319.151124 0.954378521 1.010276879 0.880421059 0.946273437 0.921802981 1.068519707 1.127645216 1.002328734 0.942066329 1 12.07653208 -7.256562156 24.93921382 1.03447837 0.943134999 0.378715985 0.054436762 447.3178177 2287319.971 0.019454155 0.018879342 5.54E-08 7.256562156 -0.091343371 QPGLRQPSPS(ph)HDGSLSPLQDR ddPTM_K562_Paclitaxel_30min_R1 1 QPGLRQPSPSHDGSLSPLQDR 21 1 Q96A00-2;Q96A00;A0A0B4J2A3 Q96A00-2 PPP1R14A Protein phosphatase 1 regulatory subunit 14A 1 QPGLRQPS(0.308)PS(0.691)HDGS(0.001)LSPLQDR 190.1 1.42E-102 0 2118.1 2042.4 2206.7 1951.9 1804 1758.1 2171.8 2306.7 1578.1 2959.8 TRUE FALSE 2147.759935 2265.396139 1649.591293 1826.71387 2049.735342 2069.87435 2583.887712 2110.731437 1729.683556 2356.591135 0.911384204 0.961302156 0.699990452 0.775150956 0.869788276 0.878334098 1.096451427 0.895671466 0.733976942 1 11.20248576 -7.33575056 3.496093649 0.928618873 0.83732435 0.119826184 0.108548906 0.567082184 13.52272619 0.042489059 0.037619586 4.62E-08 7.33575056 -0.091294524 QPGT(ph)Y(ph)TLALR ddPTM_K562_Paclitaxel_30min_R1 1 QPGTYTLALR 10 0 A0A494C0I4;A0A494BZY1;F8WCQ9;A0A494C0I5;C9J1N1;P15882-3;P15882 A0A494C0I4 CHN1 N-chimaerin 2 QPGT(1)Y(1)TLALR 113.71 0.011783 7311300 58.718 124.19 100.52 119.43 0 43.868 159.64 53.431 0 151.9 TRUE FALSE 59.54023316 137.7494842 75.14248278 111.7702943 0 51.64737386 189.9308566 48.89170304 0 120.9426966 0.492301187 1.138964882 0.621306494 0.924159106 0 0.427040039 1.570420223 0.404255109 0 1 6.918179842 -8.446859427 25 0.400557041 0.736025497 0.06209406 0.460816072 294.9027554 96981.65715 0.252208293 0.121156857 3.57E-09 8.446859427 0.335468456 QPGYQPPNPHPGPS(ph)SPPAAPASK ddPTM_K562_Paclitaxel_30min_R1 1 QPGYQPPNPHPGPSSPPAAPASK 23 0 Q9BUL9 Q9BUL9 RPP25 Ribonuclease P protein subunit p25 1 QPGYQPPNPHPGPS(0.735)S(0.265)PPAAPASK 134.69 6.12E-12 28797000 2720.2 2431.7 4304 2958.5 2155 2225.7 2004.5 3145.7 2254.2 3339.3 TRUE FALSE 2758.291193 2697.201229 3217.401969 2768.755052 2448.547484 2620.396645 2384.843411 2878.45315 2470.725982 2658.748827 1.037439552 1.014462593 1.210118811 1.041375185 0.920939752 0.985575101 0.896979582 1.082634479 0.929281456 1 11.37653178 -6.537059151 12.71781096 0.971514832 1.087664295 0.384628688 0.06791894 0.804071548 717.1458938 0.019751633 0.025694504 2.90E-07 6.537059151 0.116149463 QPGYQPPNPHPGPS(ph)SPPAAPASKR ddPTM_K562_Paclitaxel_30min_R1 2 QPGYQPPNPHPGPSSPPAAPASKR 24 1 Q9BUL9 Q9BUL9 RPP25 Ribonuclease P protein subunit p25 1 QPGY(0.001)QPPNPHPGPS(0.549)S(0.425)PPAAPAS(0.025)KR;QPGYQPPNPHPGPS(0.809)S(0.185)PPAAPAS(0.007)KR 80.733 0.00011542 46269000 3925.2 3283.7 6076.8 4048.3 3342.7 3738.5 2860 4239 4455.5 4664 TRUE FALSE 3980.16491 3642.225471 4542.636683 3788.660158 3798.032332 4401.470484 3402.67007 3878.870491 4883.470683 3713.47424 1.071817024 0.980813447 1.223284824 1.020246786 1.022770615 1.185270235 0.916303669 1.044539491 1.315067876 1 11.85855386 QPLLLS(ph)EDEEDTKR ddPTM_K562_Paclitaxel_30min_R1 7 QPLLLSEDEEDTKR 14 1 H3BPE4;Q99613-2;Q99613;B5ME19 H3BPE4 EIF3C;EIF3CL Eukaryotic translation initiation factor 3 subunit C;Eukaryotic translation initiation factor 3 subunit C-like protein 1 QPLLLS(0.999)EDEEDT(0.001)KR;QPLLLS(0.999)EDEEDT(0.001)KR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR;QPLLLS(0.996)EDEEDT(0.004)KR;QPLLLS(1)EDEEDTKR;QPLLLS(1)EDEEDTKR 109.54 0.0020786 2831186000 13178.2 11136.92 21272.8 14185 11125 10379.22 9844.34 14265.1 12145.95 18692.3 TRUE FALSE 13362.73546 12352.88659 15902.21854 13275.23759 12640.41335 12219.82894 11712.25212 13053.19072 13312.62277 14882.799 0.897864404 0.83001098 1.068496493 0.891985277 0.849330381 0.821070616 0.786965686 0.877065579 0.894497249 1 13.86135826 -4.892158723 19.20365802 0.884736952 2.443779837 0 0.080697566 5691.459037 1106299.465 0.020131846 35622.97162 1.28E-05 4.892158723 1.559042885 QPPGTQQSHS(ph)SPGEITSSPQGLDNPALLR ddPTM_K562_Paclitaxel_30min_R1 1 QPPGTQQSHSSPGEITSSPQGLDNPALLR 29 0 Q5TDH0-2;Q5TDH0;Q5TDH0-3 Q5TDH0-2 DDI2 Protein DDI1 homolog 2 1 QPPGT(0.01)QQS(0.036)HS(0.477)S(0.477)PGEITSSPQGLDNPALLR 78.128 3.99E-05 10409000 201.69 167.25 497.22 294.14 213.42 462.86 0 162.59 401.25 321.19 TRUE FALSE 204.5142823 185.5109206 371.6906615 275.2751769 242.4914172 544.9417221 0 148.7769646 439.7918553 255.7313017 0.799723307 0.72541343 1.453442183 1.076423477 0.948227361 2.130915217 0 0.581770646 1.719741981 1 7.998484948 QPPGTQQSHSS(ph)PGEITSSPQGLDNPALLR ddPTM_K562_Paclitaxel_30min_R1 2 QPPGTQQSHSSPGEITSSPQGLDNPALLR 29 0 Q5TDH0-2;Q5TDH0;Q5TDH0-3 Q5TDH0-2 DDI2 Protein DDI1 homolog 2 1 QPPGTQQS(0.002)HS(0.063)S(0.935)PGEITSSPQGLDNPALLR;QPPGT(0.001)QQS(0.005)HS(0.183)S(0.811)PGEITSSPQGLDNPALLR 108.19 1.00E-09 453900000 1073.31 1104.36 1550.72 1484.42 1153.55 1175.69 1091.65 1361.72 1028.02 1500.88 TRUE FALSE 1088.339651 1224.93776 1159.221557 1389.215945 1310.68304 1384.182114 1298.784889 1246.033386 1126.765914 1194.999832 0.910744606 1.025052662 0.970060017 1.162523967 1.096806045 1.158311555 1.086849432 1.042705909 0.942900479 1 10.2227947 -5.495805489 1.39895065 1.073541078 0.896935342 0.29274206 0.068985243 1.029861512 2.525996465 0.021293678 0.227820324 3.19E-06 5.495805489 -0.176605736 QPPMFS(ph)PLISAR ddPTM_K562_Paclitaxel_30min_R1 2 QPPMFSPLISAR 12 0 A0A087WVF7;Q9NZM3-4;Q9NZM3-3;Q9NZM3-2;Q9NZM3;F8W719;E7EPJ2 A0A087WVF7 ITSN2 Intersectin-2 1 QPPMFS(1)PLISAR;QPPMFS(1)PLISAR 142.95 0.00012013 57812000 670.15 686.83 830.35 830.56 709.12 640.47 803.49 881.64 748.34 1241.95 TRUE FALSE 679.5341676 761.8204221 620.7178729 777.291599 805.7141495 754.0483619 955.948033 806.739179 820.2214007 988.8399083 0.687203421 0.770418362 0.627723323 0.786064147 0.814807476 0.762558586 0.966736906 0.815844074 0.829478456 1 9.949593159 -3.479227887 0.077518526 1.208361424 2.02E-06 0.640388495 0.063927799 98.6895543 0.758572937 2.390624998 13.39506412 0.00033172 3.479227887 -1.208359401 QPS(ph)EEEIIK ddPTM_K562_Paclitaxel_30min_R1 1 QPSEEEIIK 9 0 B1AKZ5;Q15121;Q15121-2 B1AKZ5 PEA15 Astrocytic phosphoprotein PEA-15 1 QPS(1)EEEIIK 88.021 0.020059 6051200 1521.5 1382 2470.3 1456.8 1156.4 1128.4 717.78 1204.8 850.48 1536.5 TRUE FALSE 1542.805694 1532.891434 1846.642213 1363.367368 1313.921258 1328.505896 853.9750079 1102.44472 932.172404 1223.360457 1.261121108 1.253016987 1.509483327 1.114444529 1.074026262 1.085948045 0.698056737 0.90116099 0.761976897 1 10.25663383 -7.042968006 1.160884542 0.840096952 1.325292857 0.713456607 0.12345246 0.244377689 0.691683637 0.057247398 0.06329399 9.06E-08 7.042968006 0.485195905 QPS(ph)GAGLCDISEGTVVPEDR ddPTM_K562_Paclitaxel_30min_R1 4 QPSGAGLCDISEGTVVPEDR 20 0 H0Y332;Q5T5C0-3;Q5T5C0-2;Q5T5C0 H0Y332 STXBP5 Syntaxin-binding protein 5 1 QPS(1)GAGLCDISEGTVVPEDR;QPS(1)GAGLCDISEGTVVPEDR;QPS(1)GAGLCDISEGTVVPEDR;QPS(0.999)GAGLCDIS(0.001)EGTVVPEDR 203.58 8.61E-21 296813000 2208.1 2314.74 2358.2 2306.37 1505.8 1846.63 1964.46 2657.49 2400.79 2346.39 TRUE FALSE 2239.020213 2567.471141 1762.843244 2158.449751 1710.915453 2174.103903 2337.20603 2431.719637 2631.396607 1868.19443 1.198494213 1.374306175 0.943608018 1.155366763 0.915812308 1.163746057 1.251050743 1.301641627 1.408523955 1 10.86742889 -7.70104327 4.151540806 1.26673346 1.117418475 0.113056608 0.154275433 0.410122119 14.18021627 0.063300588 0.046683861 1.99E-08 7.70104327 -0.149314985 QPS(ph)PSHDGS(ph)LS(ph)PLQDR ddPTM_K562_Paclitaxel_30min_R1 2 QPSPSHDGSLSPLQDR 16 0 Q96A00-2;Q96A00;A0A0B4J2A3 Q96A00-2 PPP1R14A Protein phosphatase 1 regulatory subunit 14A 3 QPS(0.995)PS(0.005)HDGS(1)LS(1)PLQDR;QPS(0.848)PS(0.257)HDGS(0.998)LS(0.898)PLQDR 139.12 7.33E-09 134804000 3223.4 3980.3 5466.4 3940 3683.2 3547.3 3448 4172.7 2595.7 5434.6 TRUE FALSE 3268.537545 4414.882615 4086.339712 3687.306035 4184.914197 4176.363848 4102.24 3818.20309 2845.028583 4327.025537 0.755377457 1.020304266 0.944376149 0.852157216 0.967157268 0.965181234 0.948050795 0.882408263 0.657502148 1 12.07915992 -8.531764281 24.993699 0.809152444 0.926337452 0.107418427 0.10341777 337.182193 948419.125 0.064420739 0.024425889 2.94E-09 8.531764281 0.117185007 QPS(ph)PSHDGS(ph)LSPLQDR ddPTM_K562_Paclitaxel_30min_R1 1 QPSPSHDGSLSPLQDR 16 0 Q96A00-2;Q96A00;A0A0B4J2A3 Q96A00-2 PPP1R14A Protein phosphatase 1 regulatory subunit 14A 2 QPS(0.978)PS(0.022)HDGS(0.982)LS(0.018)PLQDR 180.76 3.16E-09 103520000 1995.4 1809.8 2218.5 1912.9 1608.7 1748.2 1674.4 1841.1 1338.6 2369.5 TRUE FALSE 2023.341756 2007.400084 1658.412237 1790.215156 1827.832176 2058.218724 1992.108659 1684.687063 1467.178511 1886.594599 1.072483594 1.064033622 0.879050665 0.948913538 0.968852649 1.090970325 1.055928316 0.892977783 0.777686161 1 10.88156873 -8.357861392 6.088471981 0.873039821 1.007177351 0.321447534 0.079711095 0.280536242 14.60973293 0.046417682 0.021852377 4.39E-09 8.357861392 0.13413753 QPS(ph)PSHDGSLS(ph)PLQDR ddPTM_K562_Paclitaxel_30min_R1 1 QPSPSHDGSLSPLQDR 16 0 Q96A00-2;Q96A00;A0A0B4J2A3 Q96A00-2 PPP1R14A Protein phosphatase 1 regulatory subunit 14A 2 QPS(0.975)PS(0.025)HDGS(0.08)LS(0.92)PLQDR 234.51 2.89E-39 85990000 2397.4 2510.9 2874.9 2812.6 2378.4 2208.3 2123 2964.9 1760.3 2983.4 TRUE FALSE 2430.970997 2785.048553 2149.095939 2632.212425 2702.378347 2599.910999 2525.828167 2713.013239 1929.38468 2375.381442 1.02340237 1.172463716 0.904737193 1.108121996 1.137660798 1.094523579 1.063335817 1.142137928 0.812242045 1 11.21394349 -8.75491281 24.99942807 0.906121008 1.080666447 0.415920396 0.08279908 127.2372148 487384.5924 0.05612541 0.020088394 1.76E-09 8.75491281 0.174545439 QPS(ph)PSHDGSLSPLQDR ddPTM_K562_Paclitaxel_30min_R1 3 QPSPSHDGSLSPLQDR 16 0 Q96A00-2;Q96A00;A0A0B4J2A3 Q96A00-2 PPP1R14A Protein phosphatase 1 regulatory subunit 14A 1 QPS(0.999)PS(0.001)HDGSLSPLQDR;QPS(0.999)PS(0.001)HDGSLSPLQDR;QPS(0.93)PS(0.069)HDGSLSPLQDR 142.55 1.74E-08 388602000 5531.83 5444.37 6881.77 5664.07 4678.42 4369.41 4925.76 5751.07 4269.47 6482.09 TRUE FALSE 5609.292687 6038.804728 5144.382051 5300.801902 5315.70001 5144.263514 5860.397246 5262.480706 4679.57167 5161.0365 1.086853908 1.170075958 0.996773042 1.027080878 1.029967529 0.996750074 1.135507809 1.019655782 0.906711601 1 12.33344512 -2 0.27960063 0.995244114 1.98134788 0.269382555 0.061595863 73.96678208 1.04246645 0.070733146 35.62122418 0.01 2 0.986103766 QPSNS(ph)PPPMSSAMIQPHGAASSSQFQGLPSR ddPTM_K562_Paclitaxel_30min_R1 1 QPSNSPPPMSSAMIQPHGAASSSQFQGLPSR 31 0 H0Y4E8;Q9Y2K2-7;Q9Y2K2;Q9Y2K2-8 H0Y4E8 SIK3 Serine/threonine-protein kinase SIK3 1 QPS(0.12)NS(0.872)PPPMS(0.002)S(0.007)AMIQPHGAASSSQFQGLPSR 89.631 1.04E-09 9578800 496.24 538.6 676.4 534.17 358.13 543.33 812.81 717.41 651.59 880.45 TRUE FALSE 503.188891 597.4061694 505.6344544 499.9107271 406.9133692 639.6819468 967.0364543 656.4615426 714.1781309 701.0138067 0.717801684 0.852203143 0.721290294 0.713125365 0.58046413 0.912509769 1.379482751 0.936445953 1.01877898 1 9.453299049 -7.521891032 24.9957541 1.088040134 0.726712308 0.654582537 0.125657331 23.19844427 587109.4814 0.047484134 0.037263293 3.01E-08 7.521891032 -0.361327825 QPSPSHDGSLS(ph)PLQDR ddPTM_K562_Paclitaxel_30min_R1 1 QPSPSHDGSLSPLQDR 16 0 Q96A00-2;Q96A00;A0A0B4J2A3 Q96A00-2 PPP1R14A Protein phosphatase 1 regulatory subunit 14A 1 QPSPSHDGS(0.141)LS(0.859)PLQDR 123.58 6.81E-05 22422000 1515.3 1499.5 1345.2 1453.7 1136.5 1222.1 1183.2 1120.4 1200.4 1461.8 TRUE FALSE 1536.518875 1663.220481 1005.587623 1360.466189 1291.310541 1438.822276 1407.706023 1025.215027 1315.703784 1163.884358 1.320164555 1.429025547 0.863992729 1.168901515 1.109483543 1.236224429 1.209489598 0.880856436 1.130442019 1 10.18473201 -5.738438511 24.99999926 1.085825901 1.374595282 0.484480025 0.12323892 204.0544316 221786.5363 0.031467076 0.083136708 1.83E-06 5.738438511 0.288769381 QPSS(ph)PSHNTNLR ddPTM_K562_Paclitaxel_30min_R1 2 QPSSPSHNTNLR 12 0 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 QPS(0.232)S(0.767)PS(0.001)HNTNLR;QPS(0.2)S(0.8)PSHNTNLR 122.1 0.0015235 66983000 2627.48 2835.51 3264.9 2999.7 2920.9 2555.19 2444.07 3021.7 2421.91 3750.7 TRUE FALSE 2664.272826 3145.100571 2440.635615 2807.312668 3318.776031 3008.31707 2907.819524 2764.987724 2654.545277 2986.305281 0.892163585 1.0531745 0.817275993 0.940062185 1.111331803 1.00737091 0.973718106 0.925889172 0.888906199 1 11.54414594 -3.25327168 17.67499568 0.962736112 0.425306158 0 0.081989655 0 0 0.019153441 0 0.000558121 3.25327168 -0.537429954 QPSVETLDS(ph)PTGSHVEWCK ddPTM_K562_Paclitaxel_30min_R1 1 QPSVETLDSPTGSHVEWCK 19 0 F8WA39;Q13613;E9PPP8;Q8NEC6;Q13613-2 F8WA39 MTMR1 Myotubularin-related protein 1 1 QPS(0.014)VET(0.295)LDS(0.618)PT(0.065)GS(0.008)HVEWCK 78.976 0.0059223 13588000 728.1 948.8 1147.8 950.54 724.48 593.41 543.33 718.16 801 810.33 TRUE FALSE 738.2956464 1052.393193 858.0236942 889.5766189 823.1664415 698.6429316 646.4240311 657.1478254 877.939629 645.1843012 1.144317438 1.631151271 1.329889293 1.378794582 1.275862478 1.082857922 1.001921513 1.018542801 1.360757891 1 9.333567525 -7.074053552 2.64186569 1.087346008 1.386784585 0.444352495 0.147263127 0.251445789 3.45487757 0.050799244 0.052830886 8.43E-08 7.074053552 0.299438577 QPT(ph)WCY(ph)S(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 QPTWCYSK 8 0 H0YBV2;G3V112;A0A087WV61;Q8NE09-3;Q8NE09 H0YBV2 RGS22 Regulator of G-protein signaling 22 3 QPT(1)WCY(1)S(1)K 59.265 0.028509 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 QPVSEPPADQVASDMPHS(ph)PTLR ddPTM_K562_Paclitaxel_30min_R1 2 QPVSEPPADQVASDMPHSPTLR 22 0 H7BYY2;Q6W2J9-4;Q6W2J9-2;Q6W2J9;H7C2V9;H7C231 H7BYY2 BCOR BCL-6 corepressor 1 QPVSEPPADQVASDMPHS(0.749)PT(0.251)LR;QPVSEPPADQVAS(0.001)DMPHS(0.767)PT(0.232)LR 134.46 1.89E-11 278460000 2659.17 2232.75 2771.55 2564 1957.21 2383.2 2391.48 2549.57 1883.04 2907.6 TRUE FALSE 2696.406584 2476.529196 2071.837924 2399.556516 2223.815138 2805.827058 2845.250846 2332.968115 2063.914406 2315.029524 1.16473961 1.069761387 0.894950973 1.036512274 0.96059904 1.21200487 1.229034367 1.007748752 0.89152833 1 11.17681488 -8.520947805 24.67079565 0.947055563 1.075479257 0.224558826 0.101691326 112.1467757 1432987.288 0.072346942 0.028274598 3.01E-09 8.520947805 0.128423694 QPVSEPPADQVASDMPHS(ph)PTLRVDR ddPTM_K562_Paclitaxel_30min_R1 2 QPVSEPPADQVASDMPHSPTLRVDR 25 1 H7BYY2;Q6W2J9-4;Q6W2J9-2;Q6W2J9;H7C2V9;H7C231 H7BYY2 BCOR BCL-6 corepressor 1 QPVSEPPADQVASDMPHS(0.959)PT(0.041)LRVDR;QPVSEPPADQVAS(0.022)DMPHS(0.77)PT(0.208)LRVDR 94.152 5.25E-05 90644000 3063.73 2926.41 3234.82 2906.81 2409.02 2747.45 2506.55 2919.08 2993.16 3185.06 TRUE FALSE 3106.631672 3245.92534 2418.149683 2720.380217 2737.169309 3234.671681 2982.154777 2671.085934 3280.666392 2535.943024 1.225040012 1.279967771 0.953550478 1.072729234 1.079349687 1.275530109 1.17595496 1.053290988 1.293667232 1 11.30830662 -11.86643006 2.429656359 0.928714064 1.150518078 0.155035889 0.108831456 12274736.45 7228918.579 5053486.358 0.028668426 1.36E-12 11.86643006 0.221804014 QQAAYYAQT(ph)SPQGMPQHPPAPQGQ ddPTM_K562_Paclitaxel_30min_R1 8 QQAAYYAQTSPQGMPQHPPAPQGQ 24 0 Q96AE4 Q96AE4 FUBP1 Far upstream element-binding protein 1 1 QQAAY(0.004)Y(0.004)AQT(0.496)S(0.496)PQGMPQHPPAPQGQ;QQAAYYAQT(0.5)S(0.5)PQGMPQHPPAPQGQ;QQAAYY(0.005)AQT(0.6)S(0.395)PQGMPQHPPAPQGQ;QQAAYYAQT(0.5)S(0.5)PQGMPQHPPAPQGQ;QQAAYY(0.001)AQT(0.499)S(0.499)PQGMPQHPPAPQGQ;QQAAYY(0.002)AQT(0.565)S(0.433)PQGMPQHPPAPQGQ;QQAAY(0.001)Y(0.005)AQT(0.55)S(0.445)PQGMPQHPPAPQGQ;QQAAYY(0.002)AQT(0.499)S(0.499)PQGMPQHPPAPQGQ 95.622 6.51E-05 1103949000 15190.3 13651.96 17079.2 15240.37 14885.4 13931.8 13686.85 16235.4 14884 16898.15 TRUE FALSE 15403.01107 15142.52716 12767.34473 14262.92088 16913.04349 16402.40912 16283.85834 14856.10143 16313.6747 13454.29775 1.144839467 1.12547882 0.94894174 1.060101474 1.257073673 1.219120419 1.21030905 1.104190029 1.212525172 1 13.71577947 -6.733290696 24.91872176 1.177163731 1.065178851 0.237821932 0.084098699 271.9896308 240778.6718 0.024780988 0.031985432 1.85E-07 6.733290696 -0.11198488 QQAAYYAQTS(ph)PQGMPQHPPAPQGQ ddPTM_K562_Paclitaxel_30min_R1 3 QQAAYYAQTSPQGMPQHPPAPQGQ 24 0 Q96AE4 Q96AE4 FUBP1 Far upstream element-binding protein 1 1 QQAAYYAQT(0.269)S(0.73)PQGMPQHPPAPQGQ;QQAAYYAQT(0.265)S(0.735)PQGMPQHPPAPQGQ;QQAAYYAQT(0.034)S(0.965)PQGMPQHPPAPQGQ 112.55 1.27E-05 261352000 6144.4 5580.2 6390.3 6718.6 5495.64 5525.5 5156.1 5980.6 5395.1 6179.4 TRUE FALSE 6230.440557 6189.465107 4776.989731 6287.699067 6244.23921 6505.369843 6134.443058 5472.5107 5913.323461 4920.034888 1.266340727 1.258012443 0.970925987 1.277978553 1.269145311 1.322220267 1.246829179 1.112291035 1.20188649 1 12.26445283 -9.37087308 1.005381922 1.001341259 1.222860981 0.317610591 0.096114521 1.634957322 2.820275385 0.09746693 0.031397886 4.26E-10 9.37087308 0.221519722 QQADKESEVS(ph)PSR ddPTM_K562_Paclitaxel_30min_R1 1 QQADKESEVSPSR 13 1 Q86SQ7-2;Q86SQ7-3;Q86SQ7-4;Q86SQ7 Q86SQ7-2 SDCCAG8 Serologically defined colon cancer antigen 8 1 QQADKESEVS(0.887)PS(0.113)R 156.72 0.0020962 2217400 771.42 404.02 1036.1 796.06 465.37 338.14 438.06 813.98 505.89 629.34 TRUE FALSE 782.22226 448.1322699 774.5237407 745.0042746 528.7612728 398.1043813 521.1795982 744.8273183 554.4829949 501.0801625 1.561072097 0.894332491 1.545708249 1.486796585 1.055242878 0.794492401 1.040112216 1.486443436 1.106575427 1 8.968897613 -6.775939227 24.99010986 1.088482308 1.35026922 0.262849535 0.237814318 386.668726 666410.8125 0.077281741 0.088011114 1.68E-07 6.775939227 0.261786911 QQDLHLES(ph)PQRQPEYS(ph)PES(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 QQDLHLESPQRQPEYSPESPR 21 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 3 QQDLHLES(0.95)PQRQPEY(0.499)S(0.556)PES(0.995)PR 60.419 0.029944 19196000 1677.9 2123.1 2059.6 1898.5 1730.1 1978 1904 2618.2 1055.4 2383.3 TRUE FALSE 1701.395777 2354.907238 1539.628507 1776.738707 1965.768911 2328.770528 2265.27406 2395.767568 1156.775886 1897.582152 0.896612447 1.241004104 0.811363295 0.936317147 1.035933495 1.227230413 1.193768638 1.262536942 0.609605168 1 10.88994663 -4.982556088 17.70473263 1.045825075 0.592804488 0.039258648 0.19982592 33056958.35 721323276.4 0.049431132 400630265.5 1.04E-05 4.982556088 -0.453020587 QQDLHLES(ph)PQRQPEYSPESPR ddPTM_K562_Paclitaxel_30min_R1 1 QQDLHLESPQRQPEYSPESPR 21 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 QQDLHLES(0.834)PQRQPEY(0.112)S(0.053)PES(0.001)PR 74.471 0.0027253 96713000 797.3 609.61 722.16 678.25 638.11 569.02 475.82 736.5 548.79 705.56 TRUE FALSE 808.4646599 676.1692814 539.8417764 634.7500807 725.0313853 669.9277076 566.1043611 673.9297279 601.5037316 561.7664847 1.439147194 1.203648313 0.960971847 1.129918032 1.290627699 1.192537693 1.00772185 1.199661686 1.070736236 1 9.133826745 -5.327954573 3.645797156 1.118922734 1.454980363 0.506309472 0.098291629 0.201069609 4.588845734 0.025374655 0.160163953 4.70E-06 5.327954573 0.33605763 QQDLHLESPQRQPEY(ph)SPESPR ddPTM_K562_Paclitaxel_30min_R1 2 QQDLHLESPQRQPEYSPESPR 21 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 QQDLHLES(0.013)PQRQPEY(0.964)S(0.019)PES(0.004)PR;QQDLHLES(0.37)PQRQPEY(0.457)S(0.171)PES(0.003)PR 96.561 0.0025737 624970000 1499.08 1894.74 2475.77 1990.12 1745.69 1623.04 1875.39 2037.06 1604.05 2103.92 TRUE FALSE 1520.071745 2101.614121 1850.731244 1862.482611 1983.482533 1910.863355 2231.235462 1863.999038 1758.12617 1675.139949 0.907429702 1.254590174 1.104821865 1.111837021 1.184069745 1.140718635 1.331969585 1.112742275 1.049539873 1 10.71006591 -5.245332624 24.19064622 1.15178208 0.90742941 0.373351812 0.091114317 2073.806874 3114561.901 0.022139697 0.5394376 5.68E-06 5.245332624 -0.244352669 QQDLHLESPQRQPEYS(ph)PES(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 QQDLHLESPQRQPEYSPESPR 21 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 2 QQDLHLES(0.002)PQRQPEY(0.459)S(0.584)PES(0.955)PR 67.899 0.011562 21171000 1997.5 1821.9 2057.4 2150.7 2008.9 2004.3 1999.8 2612.2 1288.5 2579.4 TRUE FALSE 2025.471163 2020.821203 1537.983924 2012.763728 2282.546191 2359.734463 2379.25161 2390.277305 1412.266182 2053.716864 0.986246546 0.983982378 0.748878266 0.980059016 1.111422042 1.149006713 1.158510042 1.163878696 0.687663527 1 11.00402158 -6.525942745 15.02893799 1.062475051 0.905854511 0.149144108 0.145252936 1.105070225 5392.70478 0.043022055 0.056585988 2.98E-07 6.525942745 -0.15662054 QQDLHLESPQRQPEYS(ph)PESPR ddPTM_K562_Paclitaxel_30min_R1 1 QQDLHLESPQRQPEYSPESPR 21 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 QQDLHLES(0.001)PQRQPEY(0.21)S(0.692)PES(0.097)PR 68.625 0.0060383 25686000 2210.4 1714.8 2611.6 1981.3 1906.3 1970.9 1524.7 2126.9 1599.8 2166.1 TRUE FALSE 2241.35242 1902.027663 1952.26928 1854.228286 2165.970334 2320.411442 1814.003866 1946.206569 1753.467938 1724.647631 1.299600208 1.102850013 1.131981539 1.075134568 1.25589152 1.345440889 1.051811299 1.128466206 1.016710838 1 10.75208591 -8.460235847 1.517252637 1.006886657 1.185388421 0.378543004 0.089697871 0.488144984 1.982191751 0.082556551 0.028029464 3.47E-09 8.460235847 0.178501764 QQDLHLESPQRQPEYSPES(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 QQDLHLESPQRQPEYSPESPR 21 1 Q9H6F5 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 QQDLHLESPQRQPEY(0.081)S(0.453)PES(0.466)PR;QQDLHLES(0.001)PQRQPEY(0.096)S(0.118)PES(0.785)PR 79.586 0.0017609 42719000 1564.25 1697.14 2055.2 2367.1 1795.46 2173.4 1510.2 1959.58 1387.17 2049.21 TRUE FALSE 1586.154326 1882.439485 1536.339342 2215.284801 2040.032049 2558.821974 1796.752566 1793.101448 1520.413877 1631.579877 0.972158549 1.153752575 0.941626802 1.357754427 1.250341511 1.568309348 1.101234816 1.098997035 0.931866038 1 10.6720539 -8.423579468 2.457127147 0.974278784 1.205226551 0.212530295 0.172255047 0.504444724 5.69929923 0.13814423 0.050908764 3.77E-09 8.423579468 0.230947768 QQDPS(ph)PGSNLGGGDDLKLR ddPTM_K562_Paclitaxel_30min_R1 2 QQDPSPGSNLGGGDDLKLR 19 1 J3KTD8;Q13951-2 J3KTD8 CBFB 1 QQDPS(0.988)PGS(0.012)NLGGGDDLKLR;QQDPS(0.999)PGS(0.001)NLGGGDDLKLR 85.884 0.0025532 20670000 2172.31 1874.91 3261.5 1928.68 1803.69 1471.24 1660.57 2351.4 1992.42 2697.6 TRUE FALSE 2202.729042 2079.619014 2438.093987 1804.983097 2049.383115 1732.143757 1975.654489 2151.633893 2183.800843 2147.827639 1.025561363 0.968242971 1.135144153 0.840376138 0.954165538 0.80646311 0.91983847 1.001772141 1.016748646 1 11.06866251 -6.264991199 24.99673913 0.929180477 1.03550884 0.303821469 0.074940833 396.5016237 2790476.283 0.021531174 0.033421864 5.43E-07 6.264991199 0.106328363 QQFS(ph)PSMTER ddPTM_K562_Paclitaxel_30min_R1 1 QQFSPSMTER 10 0 Q8TDB6 Q8TDB6 DTX3L E3 ubiquitin-protein ligase DTX3L 1 QQFS(0.899)PS(0.101)MTER 117.03 0.0035907 16919000 1300.3 1172.2 1430.9 1291.5 1147.7 1085.5 851.36 1147.7 773.92 1258.3 TRUE FALSE 1318.508212 1300.18476 1069.651598 1208.668971 1304.036171 1277.998184 1012.901116 1050.195721 848.258474 1001.857769 1.31606327 1.297773796 1.067668117 1.206427706 1.301618065 1.275628361 1.011022868 1.048248318 0.846685528 1 9.968461993 -7.823948209 5.091220041 0.974750544 1.23956674 0.716972251 0.082529914 0.121574674 6.169574928 0.037094778 0.025049811 1.50E-08 7.823948209 0.264816196 QQFSPS(ph)MTER ddPTM_K562_Paclitaxel_30min_R1 1 QQFSPSMTER 10 0 Q8TDB6 Q8TDB6 DTX3L E3 ubiquitin-protein ligase DTX3L 1 QQFS(0.077)PS(0.92)MT(0.003)ER 169.09 9.07E-05 21181000 1669 1446.7 1960.2 1732.4 1762.3 1472.8 1641.2 1872.3 999.14 1770.3 TRUE FALSE 1692.371149 1604.655598 1465.323267 1621.291618 2002.355096 1733.980401 1952.609132 1713.236428 1095.111861 1409.511888 1.200678876 1.138447722 1.039596245 1.150250403 1.420601779 1.230199203 1.385308736 1.215482071 0.77694404 1 10.46097993 -8.748425808 24.91752342 0.888472075 1.223536698 0.565963108 0.117029354 145.2166915 278054.8682 0.085991056 0.032052127 1.78E-09 8.748425808 0.335064624 QQFYHS(ph)VQDLSGGSR ddPTM_K562_Paclitaxel_30min_R1 1 QQFYHSVQDLSGGSR 15 0 P10398;P10398-2 P10398 ARAF Serine/threonine-protein kinase A-Raf 1 QQFYHS(1)VQDLSGGSR 93.106 0.010301 8658700 1597 1293.2 1110.8 1386.3 862.19 1033.4 1142.6 1562.5 1481 1860.3 TRUE FALSE 1619.362927 1434.395949 830.3648018 1297.388923 979.634875 1216.65898 1359.402385 1429.755872 1623.256667 1481.169839 1.093299961 0.968420982 0.560614171 0.875921781 0.66139267 0.821417604 0.917789675 0.965288271 1.095928789 1 10.53252136 -8.170565899 1.951093399 1.038995634 0.819897814 0.268427722 0.141509627 0.488247995 3.519935977 0.100522909 0.044341377 6.75E-09 8.170565899 -0.21909782 QQIENGS(ph)GAEDNGDSSHCSNASTHSNQEAGPSNKR ddPTM_K562_Paclitaxel_30min_R1 1 QQIENGSGAEDNGDSSHCSNASTHSNQEAGPSNKR 35 1 X6RFN3;Q99496-2;Q99496 X6RFN3 RNF2 E3 ubiquitin-protein ligase RING2 1 QQIENGS(0.738)GAEDNGDS(0.112)S(0.112)HCS(0.038)NASTHSNQEAGPSNKR 61.279 0.0001426 3457500 467.41 337.57 716.54 553.69 373.71 447.86 411.59 559.64 447.36 558.54 TRUE FALSE 473.9551821 374.4270342 535.6406149 518.1788016 424.615629 527.2816827 489.6870539 512.0950888 490.3309269 444.7092414 1.065764185 0.841959193 1.204473766 1.165208081 0.954816292 1.185677368 1.10113982 1.151527877 1.102587671 1 8.796718575 -5.765859482 24.99992462 1.112666498 0.953861693 0.319206065 0.089955138 108.06448 611222.2678 0.022321945 0.04916437 1.71E-06 5.765859482 -0.158804805 QQLETLVLSS(ph)DLEDGSPR ddPTM_K562_Paclitaxel_30min_R1 2 QQLETLVLSSDLEDGSPR 18 0 Q9H257;Q9H257-2 Q9H257 CARD9 Caspase recruitment domain-containing protein 9 1 QQLETLVLS(0.038)S(0.962)DLEDGSPR;QQLETLVLS(0.105)S(0.894)DLEDGS(0.001)PR 273.79 1.09E-114 17021800 1969.01 1812.9 2112.8 1843.1 1702.73 1387.18 1615.19 1970.06 2198.2 2270.37 TRUE FALSE 1996.582215 2010.838553 1579.397509 1724.891815 1934.670653 1633.176896 1921.663871 1802.691106 2409.346932 1807.667348 1.10450754 1.112394133 0.873721324 0.954208648 1.070258118 0.903472034 1.063062777 0.997247148 1.332848621 1 10.8199135 -8.681080124 25 1.166480037 1.007123375 0.254828169 0.107010511 33.6973083 10480.34287 0.069485983 0.026263205 2.08E-09 8.681080124 -0.159356662 QQLETLVLSSDLEDGS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 QQLETLVLSSDLEDGSPR 18 0 Q9H257;Q9H257-2 Q9H257 CARD9 Caspase recruitment domain-containing protein 9 1 QQLETLVLS(0.003)S(0.017)DLEDGS(0.981)PR;QQLETLVLS(0.001)S(0.004)DLEDGS(0.995)PR 175.56 2.25E-11 26436000 2558.3 2378.1 3338.2 2631.9 2141.99 2633.6 2421.4 2932.1 1856.82 3097.4 TRUE FALSE 2594.124093 2637.749 2495.430124 2463.101714 2433.765302 3100.631982 2880.848009 2682.999803 2035.175857 2466.14818 1.051893035 1.069582526 1.011873554 0.998764687 0.986869046 1.257277242 1.168156899 1.087931303 0.825244758 1 11.26804377 -8.743525911 24.9543783 0.912622393 1.079652326 0.370335182 0.086798282 231.4781532 322463.6128 0.063556694 0.023911014 1.80E-09 8.743525911 0.167029933 QQLPQT(ph)PPSCLK ddPTM_K562_Paclitaxel_30min_R1 1 QQLPQTPPSCLK 12 0 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 1 QQLPQT(0.999)PPS(0.001)CLK 160.46 0.0033679 23240000 3483.7 3180.4 5594.9 3666.2 3073.2 2456.1 2322.1 3720.4 2350.2 4724.3 TRUE FALSE 3532.482548 3527.646827 4182.398298 3431.066341 3491.82187 2891.65485 2762.706353 3404.328798 2575.947211 3761.485067 0.939119121 0.937833532 1.111900811 0.912157374 0.92830938 0.76875351 0.734472237 0.905049133 0.684821863 1 11.87708665 -6.971274681 2.299716813 0.808619467 0.985648151 0.364867659 0.097333623 0.298541116 3.189781914 0.032891635 0.036613972 1.07E-07 6.971274681 0.177028684 QQLPQTPPS(ph)CLK ddPTM_K562_Paclitaxel_30min_R1 1 QQLPQTPPSCLK 12 0 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 1 QQLPQT(0.409)PPS(0.591)CLK 153.75 0.0012388 18374000 4345.9 3387.3 6848.8 4658.3 3685.3 3288.3 3295.7 4765.3 3224.4 4933.1 TRUE FALSE 4406.756008 3757.136869 5119.735735 4359.537488 4187.300253 3871.433835 3921.04187 4360.458021 3534.118027 3927.731512 1.121959583 0.956566623 1.303484141 1.109937753 1.066086172 0.985666618 0.998296818 1.11017212 0.899786051 1 11.9394806 -6.974367442 3.083082284 1.006193502 1.123503047 0.290463286 0.091206586 0.364587124 7.138330481 0.030708088 0.033892741 1.06E-07 6.974367442 0.117309545 QQLQDALPPDAHVLAS(ph)QR ddPTM_K562_Paclitaxel_30min_R1 1 QQLQDALPPDAHVLASQR 18 0 B1AHL9;Q7Z6Z6 B1AHL9 PNPLA5 Patatin-like phospholipase domain-containing protein 5 1 QQLQDALPPDAHVLAS(1)QR 62.966 0.029334 4526400 133.09 82.399 114.3 0 161.39 0 117.15 246.1 132.48 0 TRUE FALSE 134.9536706 91.39560148 85.44355136 0 183.3740504 0 139.3786009 225.1922689 145.2052959 0 0 QQLS(ph)AEELDAQLDAYNAR ddPTM_K562_Paclitaxel_30min_R1 3 QQLSAEELDAQLDAYNAR 18 0 E9PB61;Q86V81 E9PB61 ALYREF THO complex subunit 4 1 QQLS(1)AEELDAQLDAYNAR;QQLS(1)AEELDAQLDAYNAR;QQLS(1)AEELDAQLDAYNAR 164.56 1.24E-09 101581000 3590.11 3626.76 4969.77 3757.98 3681.11 3010.99 3256.27 4464.33 4024.33 4293.55 TRUE FALSE 3640.382616 4022.741922 3715.090098 3516.959983 4182.539504 3544.9468 3874.130234 4085.057301 4410.884878 3418.522153 1.064899525 1.176748823 1.086753261 1.028795434 1.223493462 1.036982252 1.133276328 1.194977572 1.290289979 1 11.73915706 -8.077433187 5.221695265 1.180341536 1.106007057 0.071229975 0.087454383 0.464528677 22.3438775 0.039870489 0.022875383 8.37E-09 8.077433187 -0.074334478 QQLS(ph)PDRQPQSSGPDR ddPTM_K562_Paclitaxel_30min_R1 2 QQLSPDRQPQSSGPDR 16 1 Q9H1H9-3;Q9H1H9-4;Q9H1H9-2;H0Y307;A0A1B0GUA8;Q9H1H9 Q9H1H9-3 KIF13A Kinesin-like protein KIF13A 1 QQLS(0.759)PDRQPQS(0.24)S(0.002)GPDR;QQLS(0.699)PDRQPQS(0.3)S(0.001)GPDR 166.67 3.31E-07 14338400 2511.1 2291.18 2695.6 2546.3 1971.96 2163.7 2286 2604.4 1919.97 2055.3 TRUE FALSE 2546.263147 2541.338781 2015.062441 2382.991715 2240.574338 2547.401815 2719.756566 2383.139964 2104.391697 1636.428732 1.555987803 1.552978588 1.231378063 1.456214786 1.369185406 1.556683628 1.662007342 1.456305379 1.285965992 1 10.67633506 -9.047116446 2.563331846 1.001590723 1.478679585 0.639745665 0.111975131 0.213127701 3.290052162 0.115515882 0.03132628 8.97E-10 9.047116446 0.477088863 QQLS(ph)PSPGQEAGILPETEK ddPTM_K562_Paclitaxel_30min_R1 2 QQLSPSPGQEAGILPETEK 19 0 Q17RY0-2;B7ZLQ8;E5RJM0;Q17RY0 Q17RY0-2 CPEB4 Cytoplasmic polyadenylation element-binding protein 4 1 QQLS(0.5)PS(0.5)PGQEAGILPETEK;QQLS(0.847)PS(0.153)PGQEAGILPETEK 211.75 1.19E-24 37110000 4637.6 3919.3 8707.3 5998.2 4308.2 3736.9 3590.7 4918.4 3080.4 7034.1 TRUE FALSE 4702.540708 4347.222428 6509.034424 5613.502299 4895.049778 4399.586746 4272.01658 4500.55122 3376.286184 5600.546559 0.839657462 0.776213961 1.162214144 1.002313299 0.874030727 0.78556382 0.762785656 0.80359143 0.602849409 1 12.45135191 -7.095406519 3.246383479 0.776761596 0.947986342 0.230499035 0.131027548 0.366458945 7.353954316 0.046252995 0.047358131 8.03E-08 7.095406519 0.171224746 QQNIS(ph)MQRQENLR ddPTM_K562_Paclitaxel_30min_R1 1 QQNISMQRQENLR 13 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 QQNIS(1)MQRQENLR 114.69 0.010069 11507000 1733.7 1713.7 1996 1225.7 1452.2 1295.2 1401.1 1576.5 3011.2 1859.4 TRUE FALSE 1757.977149 1900.807561 1492.085114 1147.089088 1650.014226 1524.885534 1666.951411 1442.566485 3300.439214 1480.453259 1.187458731 1.28393622 1.007856955 0.7748229 1.114533144 1.030012616 1.125973684 0.974408666 2.229343746 1 10.53182323 -8.696743322 24.99997443 1.614752433 1.061137008 0.346212125 0.303579323 52.35592942 20231.02915 0.189188477 0.071506433 2.01E-09 8.696743322 -0.553615425 QQNS(ph)GRMSPMGTASGSNSPTSDSASVQR ddPTM_K562_Paclitaxel_30min_R1 1 QQNSGRMSPMGTASGSNSPTSDSASVQR 28 1 Q5QPB1;O76080 Q5QPB1 ZFAND5 AN1-type zinc finger protein 5 1 QQNS(0.538)GRMS(0.453)PMGT(0.008)ASGSNSPTSDSASVQR 56.533 0.0098767 9191600 191.06 147.87 202.78 212.11 120.55 152.58 121.52 243.78 239.62 106.82 TRUE FALSE 193.7354295 164.0149467 151.585681 198.506214 136.9709509 179.6379207 144.5777856 223.0693674 262.6365717 85.05002537 2.277899726 1.928452648 1.782312003 2.333993589 1.610475133 2.112144234 1.699914668 2.622801891 3.088024613 1 6.410239761 -8.263908695 24.99326364 2.391559932 1.961652063 0.027952527 0.544184758 484.3327022 4902116.446 0.26262196 0.135502102 5.45E-09 8.263908695 -0.429907869 QQNSGRMS(ph)PMGTASGSNSPT(ph)SDSASVQR ddPTM_K562_Paclitaxel_30min_R1 1 QQNSGRMSPMGTASGSNSPTSDSASVQR 28 1 Q5QPB1;O76080 Q5QPB1 ZFAND5 AN1-type zinc finger protein 5 2 QQNS(0.049)GRMS(0.657)PMGT(0.209)AS(0.099)GS(0.101)NS(0.352)PT(0.383)S(0.128)DS(0.016)AS(0.006)VQR 61.417 0.0069363 7530400 954.79 877.12 1281.2 1282.9 1023.6 1124.8 685.32 950.46 1350.5 1238.6 TRUE FALSE 968.1600058 972.8869278 957.7452143 1200.620536 1163.03165 1324.267487 815.3558924 869.7124904 1480.221559 986.1726401 0.981734806 0.986528006 0.971173987 1.217454721 1.179338792 1.342835355 0.82678819 0.881906935 1.500976096 1 9.945696418 -6.239243771 23.66183476 1.128282064 0.980483784 0.122138079 0.190702081 981.3163198 1046137.106 0.052752858 0.091257953 5.76E-07 6.239243771 -0.14779828 QQNSGRMS(ph)PMGTASGSNSPTSDSASVQR ddPTM_K562_Paclitaxel_30min_R1 6 QQNSGRMSPMGTASGSNSPTSDSASVQR 28 1 Q5QPB1;O76080 Q5QPB1 ZFAND5 AN1-type zinc finger protein 5 1 QQNS(0.026)GRMS(0.974)PMGTASGSNSPTSDSASVQR;QQNS(0.026)GRMS(0.83)PMGT(0.071)AS(0.071)GS(0.002)NSPTSDSASVQR;QQNS(0.006)GRMS(0.994)PMGTASGSNSPTSDSASVQR;QQNS(0.011)GRMS(0.989)PMGTASGSNSPTSDSASVQR;QQNS(0.185)GRMS(0.705)PMGT(0.055)AS(0.007)GS(0.003)NS(0.006)PT(0.026)S(0.01)DS(0.001)AS(0.001)VQR;QQNSGRMS(0.986)PMGT(0.012)AS(0.001)GSNSPTSDSASVQR 143.47 1.53E-24 290909800 4600.27 3789.52 4402.77 4341.22 3553.78 3679.13 3478.02 3679.78 6093.44 4199.15 TRUE FALSE 4664.687973 4203.272609 3291.236261 4062.79358 4037.865002 4331.572048 4137.956139 3367.159721 6678.742138 3343.360925 1.395209215 1.257199777 0.984409501 1.215182468 1.207726325 1.295574168 1.237663606 1.007118225 1.997613266 1 11.70708339 QQPPEPEWIGDGES(ph)TSPSDKVVK ddPTM_K562_Paclitaxel_30min_R1 1 QQPPEPEWIGDGESTSPSDKVVK 23 1 Q5STZ8;Q8NE71;Q8NE71-2;A0A0G2JIC2 Q5STZ8 ABCF1 ATP-binding cassette sub-family F member 1 1 QQPPEPEWIGDGES(0.622)T(0.301)S(0.07)PS(0.007)DKVVK 71.001 0.0018778 48282000 2015.7 1436.9 4015.7 2272.7 1801.8 1291.7 1111.4 1918.6 2178.6 3063.7 TRUE FALSE 2043.926019 1593.785601 3001.886869 2126.939194 2047.235665 1520.764859 1322.282348 1755.602954 2387.864264 2439.316258 0.837909399 0.65337391 1.230626352 0.871940728 0.839266191 0.623438988 0.542070895 0.719711086 0.978907207 1 11.2522611 -7.010959806 4.787666187 0.739355578 0.90089366 0.076506038 0.18792437 0.412366497 25.74859352 0.063195695 0.067470099 9.75E-08 7.010959806 0.161538082 QQPPLGPSSS(ph)LLSLPGLK ddPTM_K562_Paclitaxel_30min_R1 2 QQPPLGPSSSLLSLPGLK 18 0 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 QQPPLGPS(0.043)S(0.201)S(0.756)LLSLPGLK;QQPPLGPS(0.001)S(0.278)S(0.721)LLSLPGLK 116.27 0.00017779 7996400 7129.9 5571 7513.5 5463.4 4069.1 4142.1 4926.9 7029.2 7714.9 9807.2 TRUE FALSE 7229.740598 6179.26062 5616.623999 5113.001977 4623.38031 4876.643277 5861.753555 6432.025585 8455.950616 7808.487257 0.925882359 0.791351822 0.719297325 0.654800579 0.592096799 0.624531118 0.750690033 0.823722364 1.082917899 1 12.93082737 -8.585969229 2.914084765 1.042690511 0.714900265 0.650882902 0.091620913 0.176827598 2.879661036 0.083318495 0.027087781 2.59E-09 8.585969229 -0.327790246 QQS(ph)EEDLLLQDFSR ddPTM_K562_Paclitaxel_30min_R1 4 QQSEEDLLLQDFSR 14 0 C9JA28;Q9UNL2;Q9UNL2-2 C9JA28 SSR3 Translocon-associated protein subunit gamma 1 QQS(1)EEDLLLQDFSR;QQS(1)EEDLLLQDFSR;QQS(1)EEDLLLQDFSR;QQS(1)EEDLLLQDFSR 243.99 9.03E-47 26930800 3947.65 3845.3 4618.57 4613.82 3852.93 3872.08 3373.83 4038.85 3418.43 5214.2 TRUE FALSE 4002.92928 4265.142858 3452.554882 4317.910236 4377.764297 4558.739021 4013.99663 3695.724483 3746.785475 4151.543178 0.964202733 1.027363242 0.831631693 1.040073546 1.054490851 1.098083008 0.966868573 0.890204997 0.902504277 1 12.01943199 -8.003284536 24.9902039 0.923520128 1.00275192 0.164912673 0.07206418 230.0322776 1750189.923 0.03236217 0.021326534 9.92E-09 8.003284536 0.079231792 QQSQPAKESS(ph)PPREEAPPPPPPTEDSCAK ddPTM_K562_Paclitaxel_30min_R1 1 QQSQPAKESSPPREEAPPPPPPTEDSCAK 29 2 C9JR56;Q9UPW6-2;Q9UPW6 C9JR56 SATB2 DNA-binding protein SATB;DNA-binding protein SATB2 1 QQS(0.219)QPAKES(0.177)S(0.604)PPREEAPPPPPPTEDSCAK 47.616 0.010277 14812000 1776 1517.7 4253.9 2239.7 1554.5 1160.2 1040.1 2140.2 1814.5 2347.1 TRUE FALSE 1800.869479 1683.407619 3179.950333 2096.055667 1766.249218 1365.94518 1237.453545 1958.376651 1988.790832 1868.759732 0.963670957 0.900815439 1.701636802 1.121629298 0.945145161 0.730936758 0.662179051 1.047955293 1.064230355 1 10.86786538 -6.753844739 4.159145037 0.886159188 1.195677638 0.234728067 0.233472434 0.303258519 11.99702112 0.076958715 0.095059478 1.76E-07 6.753844739 0.30951845 QQSTPQAANS(ph)PPNLGAK ddPTM_K562_Paclitaxel_30min_R1 1 QQSTPQAANSPPNLGAK 17 0 F8WE62;Q9Y4C1 F8WE62 KDM3A Lysine-specific demethylase 3A 1 QQSTPQAANS(1)PPNLGAK 153.68 2.41E-30 0 1400.5 1069.4 2061.7 1472.2 1197.3 1129.1 922.82 1573.3 1480.8 1624 TRUE FALSE 1420.111321 1186.160708 1541.198336 1377.779681 1360.39253 1329.330032 1097.920278 1439.638345 1623.037456 1293.027909 1.09828358 0.917351204 1.191929676 1.0655452 1.052098351 1.028075282 0.849107951 1.113385361 1.255222293 1 10.3365377 -8.506684128 24.93395484 1.14650873 1.029452384 0.138894049 0.105512211 1117.209736 1720119.612 0.059063604 0.027100287 3.11E-09 8.506684128 -0.117056346 QQTDNPKGMDEQLT(ph)S(ph)LK ddPTM_K562_Paclitaxel_30min_R1 1 QQTDNPKGMDEQLTSLK 17 1 P46939;P46939-2 P46939 UTRN Utrophin 2 QQTDNPKGMDEQLT(1)S(1)LK 55.414 0.024672 30175000 1112.9 1207.1 918.82 1017.7 1290.3 1086.3 1405.9 1151.1 1321.1 1126.9 TRUE FALSE 1128.484034 1338.89526 686.8525272 952.4292771 1466.060705 1278.940053 1672.662186 1053.30687 1447.997558 897.2371614 1.257732161 1.492242316 0.765519482 1.061513408 1.633972341 1.425420287 1.864236411 1.173944767 1.613840376 1 9.809345564 -6.753750496 24.98942453 1.479892207 1.142055954 0.217439029 0.282939795 252.2584957 819853.9448 0.082882145 0.104959754 1.76E-07 6.753750496 -0.337836253 QQTEKPES(ph)EDEWER ddPTM_K562_Paclitaxel_30min_R1 2 QQTEKPESEDEWER 14 1 A2AB15;A0A140T947;O60231 A2AB15 DHX16 Putative pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 1 QQT(0.002)EKPES(0.998)EDEWER;QQT(0.199)EKPES(0.801)EDEWER 163.02 1.69E-05 75873000 3787.4 3398.7 6596.2 4162.3 3303.4 3037.3 2801.9 4336.3 2937 4701 TRUE FALSE 3840.435285 3769.78156 4930.907729 3895.348708 3753.379007 3575.922509 3333.545898 3967.904249 3219.111973 3742.93362 1.026049531 1.007172967 1.317391178 1.040720756 1.002790695 0.955379623 0.890623836 1.060105429 0.860050511 1 11.86995375 -6.720944471 3.011173592 0.957312392 1.113552862 0.349287807 0.094664634 0.287413689 5.32862329 0.030132514 0.038545137 1.90E-07 6.720944471 0.15624047 QQVAFYGQTLGQAQAHS(ph)QEQ ddPTM_K562_Paclitaxel_30min_R1 3 QQVAFYGQTLGQAQAHSQEQ 20 0 Q96I24;Q96I24-2 Q96I24 FUBP3 Far upstream element-binding protein 3 1 QQVAFYGQTLGQAQAHS(1)QEQ;QQVAFYGQTLGQAQAHS(1)QEQ;QQVAFYGQTLGQAQAHS(1)QEQ 144.74 1.96E-13 26987000 5026.7 5170.15 5881.8 5176.3 4368.58 4610.4 4884.3 5693.8 5413.7 5894.4 TRUE FALSE 5097.089309 5734.644461 4396.866845 4844.315286 4963.654557 5427.989707 5811.070427 5210.07615 5933.710074 4693.118044 1.086077371 1.22192632 0.9368754 1.032216799 1.057645367 1.156584952 1.238211009 1.110152377 1.264342814 1 12.19633103 -7.290101872 6.501508951 1.166466994 1.066337844 0.170240961 0.093957059 0.318719024 48.76345003 0.032646326 0.029345524 5.13E-08 7.290101872 -0.10012915 QRAS(ph)LSSAPVVLVGDHA ddPTM_K562_Paclitaxel_30min_R1 3 QRASLSSAPVVLVGDHA 17 1 Q9HBH9 Q9HBH9 MKNK2 MAP kinase-interacting serine/threonine-protein kinase 2 1 QRAS(0.883)LS(0.016)S(0.102)APVVLVGDHA;QRAS(0.663)LS(0.147)S(0.191)APVVLVGDHA;QRAS(0.818)LS(0.091)S(0.091)APVVLVGDHA 98.443 0.0018364 25920300 2706.15 2545.85 2675.74 2595.48 2120.26 2399.96 2485.95 3510.02 3131.77 3944 TRUE FALSE 2744.044449 2823.814513 2000.216344 2429.01753 2409.075308 2825.559209 2957.646035 3211.821892 3432.590502 3140.210635 0.873840888 0.899243662 0.636968846 0.773520573 0.767169973 0.899799261 0.941862308 1.022804603 1.093108361 1 11.61664562 -7.771422068 1.508672761 1.044735194 0.786977249 0.694572417 0.071374894 0.238845231 1.104063187 0.044656483 0.026407338 1.69E-08 7.771422068 -0.257757945 QRAVPEGFGR ddPTM_K562_Paclitaxel_30min_R1 1 QRAVPEGFGR 10 1 Q9UHI8 Q9UHI8 ADAMTS1 A disintegrin and metalloproteinase with thrombospondin motifs 1 0 93.178 0.0075932 0 5350.9 5845.4 6854.6 6804.8 5967.2 6201.7 5716.2 5968.1 5743.9 6490 FALSE TRUE 5425.829109 6483.62054 5124.071453 6368.370585 6780.033666 7301.484419 6800.819109 5461.072653 6295.627259 5167.334438 1.050024761 1.254732129 0.991627601 1.232428569 1.312094997 1.413007907 1.316117467 1.056845211 1.218351035 1 12.33520454 -5.25060449 23.29493936 1.209616765 1.050024518 0.095952098 0.13440306 1485.809371 3194315.305 0.034824752 0.465500229 5.62E-06 5.25060449 -0.159592246 QRDRDDRDFDFCR ddPTM_K562_Paclitaxel_30min_R1 1 QRDRDDRDFDFCR 13 3 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 0 45.79 0.030333 40350000 636.05 781.15 1072.8 915.05 579.52 796.36 731.72 926.08 988.45 1076.4 FALSE TRUE 644.9566624 866.4385987 801.9583718 856.3627886 658.4604354 937.5832646 870.5600502 847.4037236 1083.395039 857.0290892 0.752549325 1.010979218 0.935742301 0.999222546 0.768305818 1.093992347 1.015788217 0.988768916 1.264128666 1 9.743200363 -7.292455629 24.98895928 1.068286996 0.908130069 0.405054016 0.107773612 767.863561 618644.3428 0.036856555 0.032507783 5.10E-08 7.292455629 -0.160156927 QRDS(ph)QEDWTTFTHDR ddPTM_K562_Paclitaxel_30min_R1 2 QRDSQEDWTTFTHDR 15 1 O15357;A0A0A0MTP6;O15357-2;F5GY16 O15357 INPPL1 "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2" 1 QRDS(1)QEDWTTFTHDR;QRDS(1)QEDWTTFTHDR 136.81 5.48E-06 63591000 1892.82 1587.79 1753.07 2041.8 1512.82 1402.07 1143.59 1587.26 1788.78 1992.21 TRUE FALSE 1919.32532 1761.150282 1310.485797 1910.848087 1718.891696 1650.707428 1360.580233 1452.412356 1960.600311 1586.196508 1.210017365 1.110297666 0.826181239 1.204672988 1.08365621 1.040670194 0.857762721 0.915657264 1.236038726 1 10.6313558 -7.528440785 24.72548167 0.988747604 1.07849775 0.075661435 0.134795333 358.6199765 1594181.481 0.052075738 0.040470126 2.96E-08 7.528440785 0.089750146 QRELEIEERER ddPTM_K562_Paclitaxel_30min_R1 2 QRELEIEERER 11 2 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ; 82.831 0.018047 10364300 2238.1 2281.8 2757.7 2554 2239.2 2289.2 2064.06 2495.5 3235.2 2691.4 FALSE TRUE 2269.440305 2530.934641 2061.484528 2390.197871 2544.21695 2695.157478 2455.70461 2283.491699 3545.955415 2142.891203 1.059055309 1.181084059 0.962010822 1.115407944 1.187282372 1.257720165 1.14597727 1.065612522 1.654752892 1 11.06534289 -6.760911999 3.113824865 1.223362758 1.074036094 0.14215222 0.171163951 0.511113497 10.24717407 0.052847108 0.065816744 1.73E-07 6.760911999 -0.149326663 QRGS(ph)ETDTDSEIHESASDKDSLSK ddPTM_K562_Paclitaxel_30min_R1 1 QRGSETDTDSEIHESASDKDSLSK 24 2 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 QRGS(0.857)ET(0.121)DT(0.022)DSEIHESASDKDSLSK 71.794 0.00049718 14315000 1217.2 1131.2 3654.6 1610.9 1236.8 1255.1 845.09 1728.3 1044.5 1680.6 TRUE FALSE 1234.244555 1254.708241 2731.95103 1507.584084 1405.273099 1477.674363 1005.441416 1581.470127 1144.828892 1338.092797 0.922390852 0.937684026 2.041675312 1.126666317 1.050206011 1.104313815 0.75139887 1.181883745 0.855567636 1 10.38596246 -6.515386911 24.72010283 1.002026243 1.317606294 0.167170321 0.308903413 546.0629044 1801795.475 0.092229105 0.12444551 3.05E-07 6.515386911 0.315580051 QRIDEFES(ph)M ddPTM_K562_Paclitaxel_30min_R1 1 QRIDEFESM 9 1 P26038 P26038 MSN Moesin 1 QRIDEFES(1)M 112.3 0.015321 28009000 2559.8 2154.8 2795 2635.5 2363 2188.4 2154.3 2714.9 2585.8 3006.6 TRUE FALSE 2595.645098 2390.068351 2089.367682 2466.470826 2684.880606 2576.482013 2563.067179 2484.252299 2834.177644 2393.85327 1.084295822 0.998418901 0.872805242 1.030335007 1.121572755 1.076290701 1.070686834 1.037762978 1.183939584 1 11.22511901 -6.523633049 24.50123592 1.082154873 0.980676594 0.303032625 0.065945301 22.9308993 744808.6984 0.019223148 0.025055646 2.99E-07 6.523633049 -0.101478279 QRLT(ph)PRPS(ph)PSPMIESTPMSIAGDATPLLDEMDR ddPTM_K562_Paclitaxel_30min_R1 2 QRLTPRPSPSPMIESTPMSIAGDATPLLDEMDR 33 2 Q7KZ85;Q7KZ85-3;Q7KZ85-2 Q7KZ85 SUPT6H Transcription elongation factor SPT6 2 QRLT(0.971)PRPS(0.727)PS(0.239)PMIES(0.028)T(0.028)PMS(0.006)IAGDATPLLDEMDR;QRLT(0.946)PRPS(0.804)PS(0.241)PMIES(0.004)T(0.004)PMS(0.001)IAGDATPLLDEMDR 83.22 1.23E-07 8285600 602.02 711.31 713.85 866.94 383.92 934.95 750.93 849.58 391.83 824.43 TRUE FALSE 610.4501374 788.9732313 533.6297387 811.3383487 436.2164038 1100.750255 893.4150474 777.4028761 429.4670222 656.4107135 0.929981984 1.20195057 0.812950989 1.236022405 0.664547965 1.676923049 1.361061039 1.184323869 0.654265711 1 9.358454975 -7.228692002 24.99958503 1.198444612 0.988182643 0.108452385 0.289318242 1552.947618 1185532.486 0.096013504 0.096007874 5.91E-08 7.228692002 -0.210261969 QRMMQMYRHKR ddPTM_K562_Paclitaxel_30min_R1 1 QRMMQMYRHKR 11 3 M0R2Z9;Q8IX01-4;Q8IX01 M0R2Z9 SUGP2 SURP and G-patch domain-containing protein 2 0 42.001 0.029806 6692600 1531.1 1379.9 2162.3 1854.7 1341.7 1357.8 1368.4 1871.4 1727.8 1796.3 FALSE TRUE 1552.540124 1530.562149 1616.400622 1735.747843 1524.462255 1598.586766 1628.046756 1712.412889 1893.76291 1430.213074 1.085530647 1.070163723 1.130181685 1.213628847 1.065898699 1.117726299 1.138324622 1.197313128 1.324112431 1 10.48201438 -8.127917817 3.605713227 1.195039227 1.115707187 0.076433917 0.083673892 0.477368298 11.13475221 0.041687375 0.022684783 7.45E-09 8.127917817 -0.07933204 QRPDLGS(ph)AQK ddPTM_K562_Paclitaxel_30min_R1 2 QRPDLGSAQK 10 1 A0A3B3ITP6;A0A3B3IS57;A0A3B3IU45;A0A3B3IT92;P33991;E5RFR3 A0A3B3ITP6 MCM4 DNA replication licensing factor MCM4 1 QRPDLGS(1)AQK;QRPDLGS(1)AQK 127.71 0.0038175 165482000 8009.2 6771.7 12190.1 8519.7 6013.7 5359.3 6255.7 9256.5 8435.8 11681 TRUE FALSE 8121.35351 7511.057106 9112.55849 7973.284575 6832.867753 6309.696607 7442.686418 8470.102548 9246.096282 9300.405788 0.873225717 0.807605311 0.979802247 0.85730502 0.734684906 0.678432399 0.800253945 0.910723977 0.994160523 1 13.18307795 -8.529011733 2.971790742 0.996362899 0.817923878 0.471332634 0.076106127 0.269197574 4.673838331 0.067040719 0.023283384 2.96E-09 8.529011733 -0.178439021 QRPQATAEQIR ddPTM_K562_Paclitaxel_30min_R1 1 QRPQATAEQIR 11 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5;Q5VU81;Q5VU80;Q5VU79;Q5VU78;Q5VU77 F8W726 UBAP2L Ubiquitin-associated protein 2-like 0 76.165 0.01819 0 443.41 267.95 506.65 569.41 308.45 419.76 236.11 268.91 360.25 463.45 FALSE TRUE 449.619108 297.2056871 378.7399413 532.8905912 350.4661121 494.1985423 280.9106399 246.064417 394.8536221 368.9986356 1.218484473 0.805438445 1.0263993 1.444153283 0.949776173 1.339296395 0.761278262 0.666843704 1.070067973 1 8.527471672 -7.780787944 24.99612892 0.846784417 1.117109661 0.270537346 0.20322152 324.6059689 419349.7166 0.084739642 0.057226394 1.66E-08 7.780787944 0.270325244 QRPSSTGPPLPPAS(ph)PSATSR ddPTM_K562_Paclitaxel_30min_R1 1 QRPSSTGPPLPPASPSATSR 20 1 O95155;O95155-4 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 QRPS(0.003)S(0.001)TGPPLPPAS(0.504)PS(0.213)AT(0.159)S(0.12)R 67.655 0.013666 0 1158 1184.6 1363.2 1319.5 1183.5 1147.6 1277.7 1153.1 1203.7 1372.1 TRUE FALSE 1174.215573 1313.938634 1019.0433 1234.873176 1344.712737 1351.110747 1520.136905 1055.136958 1319.320763 1092.465267 1.074831034 1.202728063 0.932792402 1.130354633 1.230897473 1.236753962 1.3914739 0.965831125 1.207654653 1 10.0933717 -5.224220432 20.83885008 1.149486296 1.074829556 0.021961251 0.135061953 9026.20466 5052899.699 0.034014869 4.829885623 5.97E-06 5.224220432 -0.074656741 QRPVPQPS(ph)SASLDEYTLMR ddPTM_K562_Paclitaxel_30min_R1 1 QRPVPQPSSASLDEYTLMR 19 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 QRPVPQPS(0.316)S(0.316)AS(0.316)LDEYT(0.053)LMR 92.671 0.0042225 10935000 473.43 293.87 358.47 519.59 383.73 246.63 357.29 483.8 465.43 378.67 TRUE FALSE 480.0594807 325.9557204 267.969815 486.265823 436.0005226 290.3663676 425.0839123 442.6981702 510.1366311 301.4968461 1.592253739 1.08112481 0.88879807 1.612838838 1.44611968 0.963082604 1.409911638 1.468334332 1.692013159 1 8.2359991 -7.969167235 24.99574545 1.435929387 1.25643869 0.039732971 0.280069183 534.8095456 433562.6107 0.117565863 0.07926206 1.07E-08 7.969167235 -0.179490698 QRPVPQPSSAS(ph)LDEYTLMR ddPTM_K562_Paclitaxel_30min_R1 2 QRPVPQPSSASLDEYTLMR 19 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 QRPVPQPS(0.106)S(0.106)AS(0.467)LDEY(0.008)T(0.313)LMR;QRPVPQPS(0.001)SAS(0.889)LDEYT(0.11)LMR 133.51 2.03E-09 47341000 1474.59 1705.75 1574.78 1737.91 1233.89 1077.34 1371.46 1763.6 1585.59 1658.71 TRUE FALSE 1495.238809 1891.989553 1177.207312 1626.448231 1401.966708 1268.391122 1631.687375 1613.771172 1737.893004 1320.663992 1.132187157 1.432604785 0.891375338 1.231538258 1.061562 0.960419252 1.235505311 1.221939254 1.315923668 1 10.36704774 -11.77526715 12.51408664 0.999751517 1.161297331 0.093584245 0.153505543 0.001055314 1.90E-05 0.147388937 0.035693911 1.68E-12 11.77526715 0.161545814 QRQPPGT(ph)QQSHSSPGEITSSPQGLDNPALLR ddPTM_K562_Paclitaxel_30min_R1 1 QRQPPGTQQSHSSPGEITSSPQGLDNPALLR 31 1 Q5TDH0-2;Q5TDH0;Q5TDH0-3 Q5TDH0-2 DDI2 Protein DDI1 homolog 2 1 QRQPPGT(0.362)QQS(0.31)HS(0.266)S(0.056)PGEIT(0.004)S(0.002)S(0.001)PQGLDNPALLR 52.577 0.0065626 42337000 746.47 621.56 875.96 623.73 781.58 736.5 478.69 776.84 905.42 925.45 TRUE FALSE 756.9228831 689.4240228 654.8130643 583.7267495 888.0444283 867.107934 569.5189286 710.8425931 992.3896365 736.842782 1.027251541 0.935646029 0.888674057 0.792199861 1.205202046 1.176788258 0.772917836 0.964714062 1.34681327 1 9.525213018 -6.756781491 24.99911748 1.065686325 0.911116777 0.21556865 0.15485415 216.3253098 1161020.656 0.04855128 0.060594513 1.75E-07 6.756781491 -0.154569548 QRQPPGTQQSHS(ph)SPGEITSSPQGLDNPALLR ddPTM_K562_Paclitaxel_30min_R1 4 QRQPPGTQQSHSSPGEITSSPQGLDNPALLR 31 1 Q5TDH0-2;Q5TDH0;Q5TDH0-3 Q5TDH0-2 DDI2 Protein DDI1 homolog 2 1 QRQPPGT(0.166)QQS(0.166)HS(0.333)S(0.333)PGEIT(0.001)SSPQGLDNPALLR;QRQPPGT(0.016)QQS(0.021)HS(0.476)S(0.388)PGEIT(0.06)S(0.027)S(0.012)PQGLDNPALLR;QRQPPGTQQS(0.008)HS(0.915)S(0.077)PGEIT(0.001)SSPQGLDNPALLR;QRQPPGT(0.023)QQS(0.061)HS(0.453)S(0.453)PGEIT(0.007)S(0.003)S(0.001)PQGLDNPALLR 119.46 2.07E-17 970296000 3990.3 3816.95 5026 4295.35 3503.82 3908.3 3908.16 5009.5 4434.63 5471.5 TRUE FALSE 4046.176511 4233.697509 3757.124139 4019.865476 3981.099604 4601.38213 4649.712958 4583.911707 4860.596026 4356.405297 0.928787896 0.971832789 0.862436776 0.922748276 0.913849684 1.05623371 1.067327909 1.052223426 1.115735496 1 12.08892247 -7.270986483 8.077206838 1.062317124 0.919694888 0.78587125 0.036085125 0.067534757 36.89911041 0.012225544 0.011237809 5.36E-08 7.270986483 -0.142622236 QRQPS(ph)EGSSSREEEGPSTSCILESLFR ddPTM_K562_Paclitaxel_30min_R1 2 QRQPSEGSSSREEEGPSTSCILESLFR 27 2 P43355 P43355 MAGEA1 Melanoma-associated antigen 1 1 QRQPS(0.66)EGS(0.113)S(0.113)S(0.113)REEEGPST(0.001)SCILESLFR;QRQPS(0.247)EGS(0.216)S(0.216)S(0.216)REEEGPS(0.046)T(0.052)S(0.008)CILESLFR 58.877 0.0018048 62278800 416.02 337.59 207.47 461.64 351.03 147.49 364.78 319.54 366.52 351.93 TRUE FALSE 421.8455635 374.4492179 155.0916325 432.0324766 398.846229 173.6452806 433.9951007 292.3930825 401.7258837 280.2064728 1.505481152 1.336333219 0.553490542 1.541836176 1.423401198 0.619704744 1.548840383 1.043491535 1.4336781 1 8.130346472 QRQS(ph)GVVVEEPPPSK ddPTM_K562_Paclitaxel_30min_R1 1 QRQSGVVVEEPPPSK 15 1 J3QSD7;Q9NYV4-3;Q9NYV4-2;Q9NYV4 J3QSD7 CDK12 Cyclin-dependent kinase 12 1 QRQS(1)GVVVEEPPPSK 110.04 0.0004584 0 1870.4 1295 2061.2 1339.6 1198.6 1015.3 1226.8 1523.4 1705.6 2189.5 TRUE FALSE 1896.591371 1436.392479 1540.824567 1253.684052 1361.869612 1195.349199 1459.578896 1393.977661 1869.430501 1743.278698 1.087945016 0.823960323 0.883865884 0.719152969 0.781211641 0.685690246 0.837260788 0.799629837 1.072364679 1 10.76758752 -8.758830245 24.99985371 1.036182402 0.819576383 0.388710853 0.104395999 64.37727187 616891.4161 0.079603338 0.026965346 1.74E-09 8.758830245 -0.216606018 QRS(ph)DDESPSTSSGSSDADQRDPAAPEPEEQEER ddPTM_K562_Paclitaxel_30min_R1 5 QRSDDESPSTSSGSSDADQRDPAAPEPEEQEER 33 2 R4GMM6;R4GN77;R4GNG6;R4GND1;A0A1B0GX65;Q969T4 R4GMM6 UBE2E3 Ubiquitin-conjugating enzyme E2 E3 1 QRS(0.982)DDES(0.018)PSTSSGSSDADQRDPAAPEPEEQEER;QRS(0.994)DDES(0.006)PSTSSGSSDADQRDPAAPEPEEQEER;QRS(0.977)DDES(0.02)PS(0.002)T(0.001)SSGSSDADQRDPAAPEPEEQEER;QRS(0.985)DDES(0.015)PSTSSGSSDADQRDPAAPEPEEQEER;QRS(0.928)DDES(0.045)PS(0.015)T(0.006)S(0.003)S(0.001)GSSDADQRDPAAPEPEEQEER 95.646 8.74E-11 322083900 1146.41 1291.7 1586.39 1319.57 1200.1 1105.54 1328 1290.16 1043.64 1497.66 TRUE FALSE 1162.463277 1432.732174 1185.886224 1234.938686 1363.573938 1301.591996 1579.981067 1180.552855 1143.886285 1192.43607 0.974864235 1.201516971 0.994507172 1.035643518 1.143519533 1.091540276 1.325002746 0.990034506 0.959285209 1 10.21969621 -8.482953455 24.99877804 0.977981222 1.110055295 0.263375203 0.096968952 655.4547356 410407.2599 0.052578463 0.025251738 3.29E-09 8.482953455 0.132074073 QRS(ph)HSGTSPDNTAPPPPPPRPQPSHSR ddPTM_K562_Paclitaxel_30min_R1 1 QRSHSGTSPDNTAPPPPPPRPQPSHSR 27 2 Q96D71-3;Q96D71;E9PMG1;H0YDT0;Q96D71-4 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 1 QRS(0.793)HS(0.188)GT(0.017)S(0.002)PDNTAPPPPPPRPQPSHSR 69.398 0.00026799 1547800 146.18 166.13 311.24 128.37 45.395 163.61 251.42 305.14 198.13 238.79 TRUE FALSE 148.226971 184.2686352 232.6636126 120.1369228 51.57856754 192.6239363 299.1256325 279.2164524 217.1612718 190.1244669 0.779631225 0.96920001 1.223743669 0.631885652 0.271288427 1.01314649 1.573314773 1.468598213 1.142205815 1 7.570800393 -7.5321688 15.62264086 1.329125424 0.786826177 0.448120509 0.271355526 2.171025832 3645.099454 0.110356221 0.086133686 2.94E-08 7.5321688 -0.542299247 QRS(ph)PIALPVK ddPTM_K562_Paclitaxel_30min_R1 2 QRSPIALPVK 10 1 Q8TF01-2;Q8TF01 Q8TF01-2 PNISR Arginine/serine-rich protein PNISR 1 QRS(1)PIALPVK;QRS(1)PIALPVK 94.538 0.0095787 77868000 10164.6 8878.7 17393.8 12189.8 9738.3 8528.4 8685.2 12908.3 7327.5 15343.6 TRUE FALSE 10306.93576 9848.106492 13002.52007 11408.00079 11064.82133 10040.792 10333.17136 11811.65934 8031.339115 12216.5659 0.843685193 0.806127235 1.064335115 0.933814043 0.905722723 0.821899712 0.845832736 0.966855943 0.657413809 1 13.57655118 -7.11521887 6.501052194 0.855746143 0.915812441 0.056395384 0.106471016 0.755840018 38.01019272 0.034773726 0.03487027 7.67E-08 7.11521887 0.060066298 QRS(ph)PIALPVKQEPPQIDAVK ddPTM_K562_Paclitaxel_30min_R1 2 QRSPIALPVKQEPPQIDAVK 20 2 Q8TF01-2;Q8TF01 Q8TF01-2 PNISR Arginine/serine-rich protein PNISR 1 QRS(1)PIALPVKQEPPQIDAVK;QRS(1)PIALPVKQEPPQIDAVK 93.371 0.00044873 173094000 5068.9 3597.7 9579.2 4976.3 3388.4 2832.6 3225.1 4955.9 4679.8 7084.3 TRUE FALSE 5139.880239 3990.509053 7160.812486 4657.142391 3849.957446 3334.921838 3837.045889 4534.865361 5129.3157 5640.515771 0.911242951 0.707472369 1.269531507 0.825658961 0.68255415 0.59124413 0.680265076 0.803980619 0.909369977 1 12.46161137 -6.512383067 24.57677303 0.753906556 0.955616936 0.184800377 0.169203636 619.7043363 1451106.344 0.049301754 0.06807046 3.07E-07 6.512383067 0.20171038 QRS(ph)PLLNQPVPELSHASLIANQSPFR ddPTM_K562_Paclitaxel_30min_R1 2 QRSPLLNQPVPELSHASLIANQSPFR 26 1 Q9NPI6-2;Q9NPI6 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 QRS(1)PLLNQPVPELSHASLIANQSPFR;QRS(1)PLLNQPVPELSHASLIANQSPFR 156.08 4.35E-26 84741000 1494.45 1718.56 1422.08 1313.37 1174.24 989.43 2132.2 2557.7 1565.88 3223.4 TRUE FALSE 1515.376911 1906.198193 1063.058316 1229.136327 1334.191368 1164.891518 2536.773819 2340.40742 1716.289771 2566.469311 0.59045199 0.742731731 0.414210414 0.478921108 0.519854791 0.453888739 0.988429438 0.911917166 0.668735747 1 11.32556929 -7.759153783 24.99999884 0.884930374 0.534358813 0.684844922 0.119240141 37.33272137 408354.3863 0.048677584 0.035865006 1.74E-08 7.759153783 -0.350571561 QRS(ph)PS(ph)PAPAPAPAAAAGPPTR ddPTM_K562_Paclitaxel_30min_R1 2 QRSPSPAPAPAPAAAAGPPTR 21 1 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 QRS(1)PS(1)PAPAPAPAAAAGPPTR;QRS(1)PS(1)PAPAPAPAAAAGPPTR 110.34 0.0012352 312025000 2182.95 2206.9 3086.9 2657.8 2151.6 2571.42 1775.01 2389.35 1624.65 2435.26 TRUE FALSE 2213.518035 2447.856805 2307.573917 2487.340604 2444.684347 3027.425232 2111.808881 2186.359804 1780.704892 1938.952675 1.141604983 1.262463409 1.190113584 1.282826876 1.260827238 1.561371389 1.089149265 1.127598333 0.918384917 1 10.92106188 -8.247490849 2.229727616 0.987173393 1.27514348 0.507290602 0.118010623 0.27253763 2.577876332 0.080568326 0.034390317 5.66E-09 8.247490849 0.287970088 QRS(ph)PS(ph)PAPAPAPAAAAGPPTRK ddPTM_K562_Paclitaxel_30min_R1 2 QRSPSPAPAPAPAAAAGPPTRK 22 2 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 QRS(1)PS(1)PAPAPAPAAAAGPPTRK;QRS(1)PS(1)PAPAPAPAAAAGPPTRK 76.015 0.0045838 25518000 7725.7 7827.5 13284.8 9173.4 7227.9 6392.9 5523.6 8715.3 7455.2 10781.4 TRUE FALSE 7833.883636 8682.132921 9930.887936 8585.059183 8212.462349 7526.591054 6571.674265 7974.880866 8171.305271 8584.144762 0.912599199 1.011415017 1.156887286 1.000106524 0.956701288 0.876801506 0.765559581 0.929024508 0.951906742 1 13.06745869 -6.915378317 2.747560661 0.892801321 1.030544494 0.310219748 0.079867602 0.304923851 4.667656251 0.028112528 0.03222591 1.22E-07 6.915378317 0.137743173 QRSHSGT(ph)S(ph)PDNTAPPPPPPRPQPSHSR ddPTM_K562_Paclitaxel_30min_R1 1 QRSHSGTSPDNTAPPPPPPRPQPSHSR 27 2 Q96D71-3;Q96D71;E9PMG1;H0YDT0;Q96D71-4 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 2 QRS(0.419)HS(0.526)GT(0.534)S(0.508)PDNT(0.013)APPPPPPRPQPSHSR 48.694 0.018077 1787700 62.97 0 172.88 105.91 167.23 264.11 102.14 0 249.69 292.47 TRUE FALSE 63.85177428 0 129.2343058 99.11740664 190.0095572 310.9462002 121.5205318 0 273.6738401 232.8644535 0.274201465 0 0.554976528 0.425644211 0.815966346 1.335309858 0.521850931 0 1.175249533 1 7.86334662 -6.156802566 1.566365821 0.755420044 0.14371446 0.30940191 0.366201663 0.560902294 2.635092858 0.121164127 0.307794073 6.97E-07 6.156802566 -0.611705584 QRTLEQNRFGRLS(ph)VR ddPTM_K562_Paclitaxel_30min_R1 1 QRTLEQNRFGRLSVR 15 3 O94812-7;O94812-5;O94812-3;O94812-6;O94812-2;O94812 O94812-7 BAIAP3 BAI1-associated protein 3 1 QRT(0.001)LEQNRFGRLS(0.999)VR 46.3 0.029963 19252000 455.82 381.3 300.41 361.94 454.71 428.12 426.31 351.58 571.05 480.57 TRUE FALSE 462.2028863 422.9316235 224.5677801 338.7267884 516.6492003 504.0410709 507.200097 321.7110845 625.901904 382.6295702 1.207964366 1.105329165 0.586906495 0.885260353 1.350259469 1.317308201 1.325564296 0.840789917 1.63579073 1 8.579804561 -6.754808134 24.95095927 1.24464002 0.932044006 0.253886385 0.250279023 215.5792132 811141.1525 0.074561813 0.094007321 1.76E-07 6.754808134 -0.312596014 QRYDENEDLS(ph)DVEEIVSVR ddPTM_K562_Paclitaxel_30min_R1 3 QRYDENEDLSDVEEIVSVR 19 1 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;F5H0A1;S4R3G4;F8WBN2;F6SRV7 Q8NHM5-4 KDM2B Lysine-specific demethylase 2B 1 QRYDENEDLS(1)DVEEIVSVR;QRYDENEDLS(1)DVEEIVSVR;QRYDENEDLS(0.988)DVEEIVS(0.012)VR 119.34 5.37E-05 25779400 3201.4 2749.49 3347.79 3283.08 2863.94 2489.38 2568.72 3182.72 3018.03 3448.83 TRUE FALSE 3246.229477 3049.688616 2502.59901 3072.517943 3254.057115 2930.83659 3056.12121 2912.32807 3307.925266 2745.956553 1.182185302 1.110610659 0.91137604 1.118924456 1.185035907 1.0673281 1.112953228 1.060587818 1.20465317 1 11.42309308 -5.317894672 4.82923786 1.085847975 1.183648381 0.118585108 0.080522065 0.384612382 18.15171717 0.020195145 0.099023509 4.81E-06 5.317894672 0.097800407 QS(ph)LNGSY(ph)MRR ddPTM_K562_Paclitaxel_30min_R1 1 QSLNGSYMRR 10 1 Q8WYB5-3;Q8WYB5-2;Q8WYB5 Q8WYB5-3 KAT6B Histone acetyltransferase KAT6B 2 QS(1)LNGS(0.226)Y(0.774)MRR 76.17 0.024098 20349000 62.127 0 57.927 0 0 0 0 0 0 0 TRUE FALSE 62.99696968 0 43.30261242 0 0 0 0 0 0 0 0 QS(ph)PASPPPLGGGAPVR ddPTM_K562_Paclitaxel_30min_R1 1 QSPASPPPLGGGAPVR 16 0 A0A0G2JMS7;A0A0G2JNZ2;A0A0G2JPP5;A0A669KB89;Q14160-2;Q14160;Q14160-3;H0YCG0 A0A0G2JMS7 SCRIB Protein scribble homolog 1 QS(0.668)PAS(0.332)PPPLGGGAPVR 144.25 3.21E-08 136490000 2406.9 2445.5 2844.8 2526.4 2230.7 2013.4 1862 2319.9 2273.2 2404.4 TRUE FALSE 2440.604026 2712.50796 2126.595056 2364.368012 2534.559106 2370.44822 2215.30478 2122.810015 2491.551017 1914.38196 1.274878304 1.416910531 1.110852014 1.235055522 1.323956848 1.238231591 1.157190585 1.108874853 1.301491065 1 10.90266299 -14.99999997 0.099637855 0.24220657 1.400946574 0.426680372 0.08839664 182.1204963 1.233445304 28.70984798 1.528332367 1.00E-15 14.99999997 1.158740005 QS(ph)PSPSTRPIR ddPTM_K562_Paclitaxel_30min_R1 1 QSPSPSTRPIR 11 1 A9Z1X7;Q8IYB3-2;Q8IYB3;E9PCT1 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 QS(1)PSPSTRPIR 97.813 0.0076881 26655000 1828.6 2163.3 2221.9 2366.1 1632.3 1632.5 1464.3 1817.9 1438.2 2279.3 TRUE FALSE 1854.206042 2399.49641 1660.953865 2214.348936 1854.646895 1922.000954 1742.143281 1663.458048 1576.345536 1814.777409 1.021726429 1.322198744 0.915238341 1.220176604 1.021969353 1.059083579 0.959976288 0.916618225 0.868616464 1 10.82557689 -7.586507549 1.2558063 0.916684492 1.117490908 0.341599624 0.108983093 0.474128851 1.524444371 0.059815564 0.040393573 2.59E-08 7.586507549 0.200806416 QS(ph)SPAMPHK ddPTM_K562_Paclitaxel_30min_R1 1 QSSPAMPHK 9 0 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 QS(0.661)S(0.339)PAMPHK 95.094 0.010006 35619000 4239.3 3698.7 6287.8 4584.7 3073.1 3237.3 3080.5 4414.2 4832.5 5458 TRUE FALSE 4298.663279 4102.536574 4700.367123 4290.657862 3491.708248 3811.389701 3665.008794 4039.186157 5296.683217 4345.656604 0.989186139 0.944054477 1.081624148 0.987343974 0.803493825 0.877057266 0.84337285 0.929476607 1.218845321 1 12.08535846 -8.736723196 24.72682335 1.109422585 0.930125752 0.38565954 0.089572806 184.8575983 184938.2413 0.064252924 0.024260164 1.83E-09 8.736723196 -0.179296833 QSAGPNS(ph)PTGGGGGGGSGGTR ddPTM_K562_Paclitaxel_30min_R1 2 QSAGPNSPTGGGGGGGSGGTR 21 0 H7BZ52;S4R3H3;S4R393;S4R410;A7E2V4-5;A7E2V4;A7E2V4-3;A7E2V4-4;A7E2V4-2 H7BZ52 ZSWIM8 Zinc finger SWIM domain-containing protein 8 1 QSAGPNS(0.756)PT(0.244)GGGGGGGSGGTR;QS(0.001)AGPNS(0.846)PT(0.152)GGGGGGGSGGTR 125.04 2.46E-07 1218290 363.58 469.58 511.14 302.77 261.41 297.284 121.11 459.6 198.48 584.03 TRUE FALSE 368.6712417 520.8503324 382.0963853 283.3516873 297.0184677 350.0031433 144.0899903 420.5541113 217.5448908 465.0043654 0.792833937 1.120097726 0.821704942 0.609352747 0.638743396 0.752687866 0.309868038 0.904408953 0.467834083 1 8.86110045 -6.038335399 4.655629134 0.654405192 0.96174312 0.249049922 0.200459949 0.229733733 11.7000817 0.050601593 0.096290062 9.16E-07 6.038335399 0.307337928 QSFDDNDS(ph)EELEDKDSK ddPTM_K562_Paclitaxel_30min_R1 3 QSFDDNDSEELEDKDSK 17 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 QSFDDNDS(0.997)EELEDKDS(0.003)K;QSFDDNDS(0.997)EELEDKDS(0.002)K;QS(0.221)FDDNDS(0.779)EELEDKDSK 110.33 0.00060312 291143000 5490.3 3415.1 12606.7 5704.9 3658.9 3349.5 2832.4 4889.8 4690.5 7990.7 TRUE FALSE 5567.181139 3787.972167 9423.982667 5339.013248 4157.304126 3943.486796 3369.833114 4474.380969 5141.043483 6362.190954 0.875041504 0.595388003 1.481248007 0.839178404 0.653439068 0.619831568 0.52966551 0.703276749 0.808061801 1 12.63530796 -6.523191451 24.62403134 0.694918819 0.980903881 0.199981945 0.234688435 13.21752307 1040713.395 0.069310652 0.090404335 3.00E-07 6.523191451 0.285985063 QSFTMVADT(ph)PENLR ddPTM_K562_Paclitaxel_30min_R1 4 QSFTMVADTPENLR 14 0 Q14847;Q14847-2;C9J9W2;F6S2S5 Q14847 LASP1 LIM and SH3 domain protein 1 1 QSFTMVADT(1)PENLR;QSFTMVADT(1)PENLR;QSFTMVADT(1)PENLR;QS(0.022)FT(0.013)MVADT(0.965)PENLR 247.5 4.09E-58 142760000 7084.7 6455.76 7191.4 7170.2 5612.3 5667.48 5671.78 6130.5 5958.12 7489.8 TRUE FALSE 7183.907658 7160.621709 5375.842128 6710.335465 6376.790277 6672.528003 6747.970646 5609.67576 6530.424048 5963.374649 1.204671529 1.200766702 0.901476504 1.125258073 1.069325785 1.118918129 1.131569127 0.940688132 1.095088676 1 12.54191326 -5.590734187 24.99996504 1.054498678 1.203699874 0.403277902 0.075035778 44.28267732 16314.34426 0.018639037 0.049313797 2.57E-06 5.590734187 0.149201195 QSGLSSLVNGKS(ph)PIR ddPTM_K562_Paclitaxel_30min_R1 2 QSGLSSLVNGKSPIR 15 1 H0Y612;Q9UPN9-2;Q9UPN9 H0Y612 TRIM33 E3 ubiquitin-protein ligase TRIM33 1 QSGLSSLVNGKS(1)PIR;QSGLSSLVNGKS(1)PIR 176.46 4.49E-06 172032000 4418.3 3220.2 6977.7 4931.5 3285.8 3552.1 2799.1 4186.5 4038.8 5146.5 TRUE FALSE 4480.169832 3571.792326 5216.093336 4615.215663 3733.381589 4182.015061 3330.214613 3830.830694 4426.744786 4097.640475 1.093353567 0.871670501 1.272950462 1.126310542 0.911105211 1.020591017 0.812715179 0.934886971 1.080315565 1 12.00057769 -6.760589468 24.99990997 0.952351744 1.088391165 0.243154939 0.1128268 33.94930692 998588.0898 0.034867948 0.042403694 1.74E-07 6.760589468 0.136039421 QSHAASAAPQAS(ph)SPPDYTMAWAEYYR ddPTM_K562_Paclitaxel_30min_R1 1 QSHAASAAPQASSPPDYTMAWAEYYR 26 0 Q96I24 Q96I24 FUBP3 Far upstream element-binding protein 3 1 QSHAASAAPQAS(0.5)S(0.5)PPDYTMAWAEYYR 105.35 1.35E-06 67927000 2535.1 2696.7 3209.6 2800.7 2168.7 2378 2742 2958 2969.8 3849.1 TRUE FALSE 2570.599221 2991.134826 2399.296784 2621.075637 2464.113656 2799.704911 3262.280186 2706.699437 3255.062559 3064.651307 0.838790115 0.976011469 0.78289389 0.85526064 0.804043726 0.913547621 1.064486579 0.883199805 1.062131457 1 11.58150722 -7.539312337 7.89454282 0.992536512 0.855044849 0.529066249 0.066887885 0.13969832 46.68159197 0.024446478 0.019255287 2.89E-08 7.539312337 -0.137491663 QSHAASAAPQASS(ph)PPDYTMAWAEYYR ddPTM_K562_Paclitaxel_30min_R1 1 QSHAASAAPQASSPPDYTMAWAEYYR 26 0 Q96I24 Q96I24 FUBP3 Far upstream element-binding protein 3 1 QSHAASAAPQAS(0.257)S(0.743)PPDYTMAWAEYYR 121.83 1.02E-09 69205000 2335.1 2572 2639.5 2341.7 1909 1968.5 2294.2 2882.2 2843.5 4001.2 TRUE FALSE 2367.798604 2852.819658 1973.12558 2191.513843 2169.03812 2317.585836 2729.512473 2637.33912 3116.63088 3185.753244 0.743246078 0.895492978 0.6193592 0.687910731 0.680855658 0.727484415 0.85678716 0.827854174 0.978302662 1 11.63741881 -8.433655169 1.118134391 1.001280278 0.725501468 0.65491406 0.072603296 0.325122145 0.724030158 0.069277455 0.025139025 3.68E-09 8.433655169 -0.27577881 QSHSES(ph)PSLQSK ddPTM_K562_Paclitaxel_30min_R1 4 QSHSESPSLQSK 12 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 QSHS(0.028)ES(0.896)PS(0.076)LQSK;QSHSES(0.998)PS(0.002)LQSK;QSHS(0.008)ES(0.939)PS(0.053)LQSK;QS(0.006)HS(0.086)ES(0.845)PS(0.063)LQSK 227.91 1.61E-23 351064000 15367.8 12665.3 25658.9 16961.5 13355.9 12536.6 10418.2 15966.6 14382.6 19095 TRUE FALSE 15582.99661 14048.14029 19180.99335 15873.66531 15175.1997 14759.78999 12394.99906 14610.13767 15764.11299 15203.42852 1.024965954 0.924011335 1.261622885 1.044084582 0.99814326 0.970819836 0.815276571 0.960976509 1.036878818 1 13.89210908 -6.954653215 2.59364164 0.946665175 1.067711531 0.219494631 0.094539879 0.425473059 5.806488584 0.033810166 0.037901036 1.11E-07 6.954653215 0.121046357 QSHSGSIS(ph)PYPK ddPTM_K562_Paclitaxel_30min_R1 6 QSHSGSISPYPK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 QSHSGSIS(1)PYPK;QSHSGS(0.004)IS(0.996)PYPK;QSHSGS(0.001)IS(0.999)PYPK;QSHSGSIS(1)PYPK;QSHSGSIS(1)PYPK;QSHSGSIS(1)PYPK 147.51 0.00026581 394539000 31279.1 27509.4 55672.1 37674.4 29286.2 24329.1 24621.3 34188.7 22977.5 43775.7 TRUE FALSE 31717.1039 30512.96932 41616.98981 35258.13261 33275.47626 28643.52429 29293.06314 31284.15654 25184.59154 34854.18831 0.909994048 0.875446275 1.194031244 1.011589548 0.954705241 0.821810109 0.840446 0.897572374 0.72257002 1 15.08904441 -7.09757062 3.813827954 0.849523621 1.00167686 0.302598041 0.101781479 0.295796894 7.80665507 0.035172414 0.035816099 7.99E-08 7.09757062 0.152153239 QSIS(ph)FSGLPSGR ddPTM_K562_Paclitaxel_30min_R1 1 QSISFSGLPSGR 12 0 M0QY76;P26651 M0QY76 ZFP36 Tristetraprolin 1 QSIS(0.938)FS(0.061)GLPS(0.001)GR 87.363 0.021848 11255000 506.54 497.71 617.22 519.41 451.75 327.95 483.59 513.21 550.11 693.05 TRUE FALSE 513.6331228 552.0516609 461.3951773 486.0973674 513.2859982 386.1073279 575.348678 469.6096071 602.9505235 551.8060296 0.930821874 1.000445141 0.83615465 0.880920725 0.930192804 0.699715674 1.042664718 0.851041094 1.092685638 1 9.108017411 -8.761318871 24.99999936 1.046342849 0.896865454 0.300940504 0.091352731 3.799880838 789770.7196 0.069296712 0.022333299 1.73E-09 8.761318871 -0.149477395 QSLPAS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 QSLPASPR 8 0 Q3KQU3-2;Q3KQU3-4;Q3KQU3;H0YF21 Q3KQU3-2 MAP7D1 MAP7 domain-containing protein 1 1 QSLPAS(1)PR 84.687 0.024396 30090000 1853.3 1792.7 2043 1683.9 1417.9 1927.7 1252.4 1687.3 1376 1672.8 TRUE FALSE 1879.251918 1988.433049 1527.219382 1575.902191 1611.041985 2269.550529 1490.036362 1543.953333 1508.170948 1331.882442 1.410974316 1.492949367 1.146662299 1.18321418 1.209597735 1.704017155 1.118744654 1.159226434 1.13236041 1 10.37925103 -7.928892886 24.99999997 1.115222721 1.34572681 0.378524702 0.159492388 56.11992062 19729.66925 0.06963865 0.046950363 1.18E-08 7.928892886 0.23050409 QSLS(ph)PMSQRPVLK ddPTM_K562_Paclitaxel_30min_R1 1 QSLSPMSQRPVLK 13 1 Q9NSV4-1;Q9NSV4-7;Q9NSV4-6;Q9NSV4-5;Q9NSV4-4;Q9NSV4 Q9NSV4-1 DIAPH3 Protein diaphanous homolog 3 1 QS(0.137)LS(0.432)PMS(0.432)QRPVLK 100.18 0.024805 28489000 1437.3 1216.4 2606.9 1690.7 1318.3 1005.6 1197.4 1880.2 1487.8 1942.9 TRUE FALSE 1457.426634 1349.210666 1948.755853 1582.266069 1497.874779 1183.929041 1424.600399 1720.465274 1630.709838 1546.935914 0.942137694 0.872182651 1.259752157 1.022838797 0.96828496 0.765338131 0.920917529 1.112176179 1.054154748 1 10.59519771 -8.260092983 24.98265048 1.062374097 0.967028941 0.104232073 0.121516408 304.7169775 5654234.973 0.066100287 0.035514908 5.49E-09 8.260092983 -0.095345156 QSLTS(ph)PDSQSARPANR ddPTM_K562_Paclitaxel_30min_R1 2 QSLTSPDSQSARPANR 16 1 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 QSLT(0.19)S(0.705)PDS(0.083)QS(0.023)ARPANR;QSLT(0.002)S(0.846)PDS(0.117)QS(0.036)ARPANR 172.32 1.48E-08 14131300 6307.4 6481.8 7737.9 6429.3 5574.6 5304.3 5262.6 6356 7181.4 7208.1 TRUE FALSE 6395.72306 7189.504844 5784.371444 6016.953474 6333.954899 6244.943129 6261.150877 5816.018127 7871.205557 5739.085263 1.114415062 1.252726613 1.007890836 1.048416812 1.103652343 1.088142595 1.090966694 1.013405074 1.371508733 1 12.48660509 -10.80567299 13.18752958 1.000009795 1.114075743 0.101891774 0.10608112 0 0 0.099052843 0.024023843 1.56E-11 10.80567299 0.114065947 QSMAFSILNT(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 QSMAFSILNTPK 12 0 A0A087WY61;Q14980-5;Q14980-2;Q14980;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 QSMAFSILNT(1)PK 134.14 0.0011537 15707000 2257.9 1711.4 2965.6 2043.3 1498.9 1883.8 1667.9 2512.7 1277 3307.2 TRUE FALSE 2289.517566 1898.25644 2216.897602 1912.251883 1703.075557 2217.86548 1984.375318 2299.230451 1399.661556 2633.190825 0.869484105 0.720895889 0.84190541 0.726210902 0.646772555 0.842272979 0.75360103 0.873172741 0.531545812 1 11.36259636 QSMDMS(ph)PIK ddPTM_K562_Paclitaxel_30min_R1 3 QSMDMSPIK 9 0 F5H658;Q14562 F5H658 DHX8 ATP-dependent RNA helicase DHX8 1 QSMDMS(1)PIK;QSMDMS(1)PIK;QSMDMS(1)PIK 138.89 0.00091563 66061000 7635.2 6810.7 12810.3 8737.9 6175 5299.1 5836.7 9723 5445 10687.3 TRUE FALSE 7742.116357 7554.315258 9576.181329 8177.490203 7016.139544 6238.820982 6944.183355 8896.970461 5968.016579 8509.222394 0.909850043 0.887779742 1.125388536 0.961014982 0.824533573 0.733183444 0.816077314 1.045567979 0.701358632 1 13.05481158 -6.713132691 6.69865117 0.847902796 0.977206238 0.198344857 0.115351537 0.322524517 33.44351943 0.034394417 0.044072576 1.94E-07 6.713132691 0.129303442 QSNASS(ph)DVEVEEK ddPTM_K562_Paclitaxel_30min_R1 2 QSNASSDVEVEEK 13 0 O75475-3;O75475-2;O75475 O75475-3 PSIP1 PC4 and SFRS1-interacting protein 1 QSNAS(0.004)S(0.996)DVEVEEK;QSNAS(0.023)S(0.977)DVEVEEK 199.65 9.98E-07 32532000 5219.8 4347.5 8799.3 5810.2 4510.1 4135.5 4635.9 6352.9 3337.3 7373.1 TRUE FALSE 5292.893304 4822.174752 6577.807887 5437.559777 5124.451977 4868.87286 5515.537824 5813.181491 3657.862576 5870.458173 0.901615027 0.821430732 1.120493102 0.926258159 0.872921981 0.829385495 0.939541286 0.990243235 0.623096608 1 12.51925739 -6.670561874 5.219951916 0.876380544 0.948415931 0.068757334 0.12111633 0.62370831 27.74442745 0.035849011 0.046308662 2.14E-07 6.670561874 0.072035387 QSNPKSS(ph)PGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR ddPTM_K562_Paclitaxel_30min_R1 2 QSNPKSSPGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR 41 2 P40222 P40222 TXLNA Alpha-taxilin 1 QS(0.005)NPKS(0.266)S(0.728)PGQPEAGPEGAQERPS(0.001)QAAPAVEAEGPGSSQAPR;QS(0.006)NPKS(0.09)S(0.904)PGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR 82.453 3.80E-13 72477000 1934.25 1530.48 2737 1565.54 1530.73 1295.32 915.06 1972.56 2213.02 1839 TRUE FALSE 1961.335468 1697.582982 2046.010499 1465.133271 1739.241341 1525.026815 1088.687858 1804.978716 2425.590459 1464.210791 1.339517152 1.159384286 1.397346962 1.000630019 1.187835353 1.04153502 0.743532192 1.232731467 1.656585565 1 10.51590755 -6.260766622 24.99861233 1.116424289 1.284812943 0.110469242 0.226585475 153.2381508 5693948.344 0.065480261 0.10536897 5.49E-07 6.260766622 0.168388654 QSPALQHRPMGQS(ph)QANHIPGDR ddPTM_K562_Paclitaxel_30min_R1 1 QSPALQHRPMGQSQANHIPGDR 22 1 Q5TCQ9-3;Q5TCQ9-2;Q5TCQ9;Q5TCQ9-1 Q5TCQ9-3 MAGI3 "Membrane-associated guanylate kinase, WW and PDZ domain-containing protein 3" 1 QS(0.022)PALQHRPMGQS(0.978)QANHIPGDR 53.201 0.022677 8945100 738.91 764.34 980.3 724.58 744.87 784.42 812.21 631.72 489.26 1025.3 TRUE FALSE 749.2570197 847.793226 732.8111408 678.1086819 846.3339048 923.5258732 966.3226075 578.0514429 536.2556091 816.3432972 0.917820998 1.038525372 0.89767521 0.830666074 1.03673774 1.131295959 1.183720882 0.708098474 0.656899629 1 9.673032167 -8.282190128 24.9788086 0.76187426 1.001701049 0.361985993 0.130474239 875.0304935 1053315.942 0.07435041 0.035781673 5.22E-09 8.282190128 0.239826789 QSPAS(ph)PPPLGGGAPVR ddPTM_K562_Paclitaxel_30min_R1 2 QSPASPPPLGGGAPVR 16 0 A0A0G2JMS7;A0A0G2JNZ2;A0A0G2JPP5;A0A669KB89;Q14160-2;Q14160;Q14160-3;H0YCG0 A0A0G2JMS7 SCRIB Protein scribble homolog 1 QS(0.02)PAS(0.98)PPPLGGGAPVR;QS(0.136)PAS(0.864)PPPLGGGAPVR 196.65 7.15E-13 171265000 4437.5 3955 5283.6 3888.3 3348.2 3202.6 3332.8 3834.1 4367.2 4573 TRUE FALSE 4499.638691 4386.820275 3949.689833 3638.921841 3804.281525 3770.536143 3965.181402 3508.369273 4786.689073 3641.02009 1.235818144 1.204832758 1.084775622 0.99942372 1.044839477 1.035571365 1.089030355 0.963567678 1.314656046 1 11.83012699 -5.759242925 3.635427398 1.060101321 1.228516506 0.316356884 0.091218696 0.23868399 6.669653173 0.022883836 0.062124834 1.74E-06 5.759242925 0.168415185 QSPLTYEDHGAPFAGHLPRGS(ph)PVTTREPTPR ddPTM_K562_Paclitaxel_30min_R1 1 QSPLTYEDHGAPFAGHLPRGSPVTTREPTPR 31 2 C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;Q9Y618;C9J7T7;A0A384DVL6 C9JE98 NCOR2 Nuclear receptor corepressor 2 1 QSPLTYEDHGAPFAGHLPRGS(0.87)PVT(0.062)T(0.062)REPT(0.005)PR 67.899 9.33E-05 9796100 553.49 472.95 754.18 531.57 302.36 402.68 326.56 368.89 483.45 683.4 TRUE FALSE 561.2405677 524.5882804 563.7779314 497.4774794 343.546551 474.0896441 388.5230552 337.550492 529.8875326 544.1227049 1.031459564 0.964099229 1.036122783 0.914274437 0.631376982 0.871291787 0.714035735 0.6203573 0.973838305 1 9.087788219 -6.530795729 23.65647614 0.781092512 1.00079513 0.365033709 0.122265873 89.38927978 267098.362 0.034250241 0.044319895 2.95E-07 6.530795729 0.219702618 QSPPLSLEIYQT(ph)LSPR ddPTM_K562_Paclitaxel_30min_R1 1 QSPPLSLEIYQTLSPR 16 0 A0A1X7SBY3;H0Y860;Q9P246;Q9P246-2 A0A1X7SBY3 STIM2 Stromal interaction molecule 2 1 QSPPLS(0.003)LEIY(0.001)QT(0.55)LS(0.446)PR 103.75 0.0054856 14062000 839.33 616.79 946.54 916.16 610.99 688.26 540.77 790.11 1016.5 1086 TRUE FALSE 851.0832096 684.133218 707.5742703 857.4015982 694.2171821 810.3132474 643.3782845 722.9852238 1114.139367 864.6726039 0.984283769 0.79120492 0.818314663 0.99159103 0.802867096 0.937133019 0.74407155 0.83613754 1.288510081 1 9.75601017 -8.745740539 24.99897718 1.144255039 0.860066392 0.548261099 0.102015352 140.65971 223989.9671 0.064999444 0.024385861 1.80E-09 8.745740539 -0.284188647 QSPPLSLEIYQTLS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 QSPPLSLEIYQTLSPR 16 0 A0A1X7SBY3;H0Y860;Q9P246;Q9P246-2 A0A1X7SBY3 STIM2 Stromal interaction molecule 2 1 QSPPLS(0.034)LEIYQT(0.468)LS(0.498)PR 102.84 0.0030229 0 1088.6 842.99 1587.6 1327.4 946.77 654.3 691.56 1031.5 1005.2 944.05 TRUE FALSE 1103.843759 935.030499 1186.790745 1242.266505 1075.736103 770.3309182 822.7798998 943.8676366 1101.753951 751.6520918 1.468556757 1.243967135 1.578909655 1.652714758 1.431162255 1.024850362 1.09462863 1.255724087 1.465776472 1 9.553921243 -7.123187145 6.365388998 1.180738649 1.482988043 0.489315514 0.157152115 0.235670901 11.28871485 0.055176886 0.055321347 7.53E-08 7.123187145 0.302249394 QSPSPSEVS(ph)QSPGREVMSYAQAQR ddPTM_K562_Paclitaxel_30min_R1 1 QSPSPSEVSQSPGREVMSYAQAQR 24 1 A0A5F9ZH11;P55201-3;P55201;P55201-2;C9JHC0;A0A5F9ZHX4;A0A5F9ZHW9;P55201-4 A0A5F9ZH11 BRPF1 Peregrin 1 QS(0.001)PS(0.008)PS(0.141)EVS(0.423)QS(0.423)PGREVMS(0.002)Y(0.002)AQAQR 49.076 0.027937 69644000 208.96 209.6 339.2 201.82 311.74 352.55 225.98 293.3 435.54 303 TRUE FALSE 211.8860847 232.4848368 253.5647648 188.8761685 354.2042658 415.0697925 268.8585253 268.3823343 477.375563 241.2484337 0.878289991 0.963673974 1.051052481 0.782911481 1.468213743 1.720507719 1.114446719 1.112472857 1.978771658 1 7.914375765 -6.767879067 24.99510077 1.406533325 0.931607858 0.40621961 0.284103054 156.1103863 605927.977 0.086229983 0.10010797 1.71E-07 6.767879067 -0.474925467 QSS(ph)GASSSSFSSSR ddPTM_K562_Paclitaxel_30min_R1 1 QSSGASSSSFSSSR 14 0 A0A2R8Y4A4;A0A2R8YFS5;A0A2R8YDT5;A0A2R8YFR4;A0A2R8YCW1;A0A2R8Y5G6;A0A0J9YVQ7;O00571;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;A0A0D9SG12;A0A0D9SFB3;F6S8Q4;A0A2R8Y7T2;A0A0D9SF53;O00571-2;A0A087WVZ1 A0A2R8Y4A4 DDX3X ATP-dependent RNA helicase DDX3X 1 QS(0.073)S(0.692)GAS(0.013)S(0.073)S(0.073)S(0.073)FS(0.004)SSR 88.78 0.016574 5023000 1957.9 2054.5 2308.7 1834.5 1643.4 1525.5 1774.5 2187.3 1374.4 2247 TRUE FALSE 1985.316641 2278.817258 1725.840131 1716.843381 1867.258903 1796.026006 2111.202111 2001.475212 1506.417261 1789.060167 1.109698085 1.273751046 0.964662991 0.959634233 1.043709394 1.003893575 1.180062108 1.118729962 0.842015986 1 10.80498619 -5.766348913 24.99990634 1.023005496 1.191724574 0.359577868 0.094226763 125.0691598 636879.5661 0.025020504 0.054860679 1.71E-06 5.766348913 0.168719077 QSS(ph)GPGASSGTSGDHGELVVR ddPTM_K562_Paclitaxel_30min_R1 2 QSSGPGASSGTSGDHGELVVR 21 0 P29692-3;E9PL71;E9PN91 P29692-3 EEF1D Elongation factor 1-delta 1 QS(0.252)S(0.748)GPGASSGTSGDHGELVVR;QS(0.094)S(0.906)GPGASSGTSGDHGELVVR 203.24 3.41E-27 56670000 1498.15 1383.06 1932.65 1568.06 1278.55 1098.97 938.62 1557.22 1226.18 1589.63 TRUE FALSE 1519.128722 1534.067168 1444.728605 1467.49165 1452.710156 1293.856899 1116.718245 1424.924441 1343.960068 1265.662533 1.200263642 1.212066509 1.141480108 1.15946519 1.147786331 1.022276369 0.882319114 1.125832837 1.061862884 1 10.30567707 -7.206341319 3.850863854 1.017089154 1.175188354 0.625816323 0.059772758 0.168470034 5.141170778 0.021932664 0.021396359 6.22E-08 7.206341319 0.1580992 QSS(ph)T(ph)LT(ph)THK ddPTM_K562_Paclitaxel_30min_R1 1 QSSTLTTHK 9 0 M0R1H8;Q9P255;Q9H8G1;A6NK75;Q8TF32 M0R1H8 ZNF431;ZNF492;ZNF430;ZNF98 Zinc finger protein 492;Zinc finger protein 430;Zinc finger protein 98;Zinc finger protein 431 3 QS(0.005)S(0.994)T(0.703)LT(0.703)T(0.594)HK 71.03 0.030805 0 804.39 724.3 975.84 656.32 668.39 761.59 681.41 917.86 571.38 906.37 TRUE FALSE 815.6539418 803.3815234 729.477123 614.2265728 759.4360339 896.6472932 810.7039903 839.8820639 626.263602 721.6512965 1.130260481 1.113254459 1.010844332 0.851140399 1.052358719 1.242493844 1.12340128 1.163833652 0.867820241 1 9.495158082 -8.765180285 24.99684289 0.933910119 1.081875151 0.258959431 0.10269211 156.3728868 1044811.863 0.095951008 0.028509634 1.72E-09 8.765180285 0.147965033 QSSGASS(ph)SSFSSSR ddPTM_K562_Paclitaxel_30min_R1 1 QSSGASSSSFSSSR 14 0 A0A2R8Y4A4;A0A2R8YFS5;A0A2R8YDT5;A0A2R8YFR4;A0A2R8YCW1;A0A2R8Y5G6;A0A0J9YVQ7;O00571;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;A0A0D9SG12;A0A0D9SFB3;F6S8Q4;A0A2R8Y7T2;A0A0D9SF53;O00571-2;A0A087WVZ1 A0A2R8Y4A4 DDX3X ATP-dependent RNA helicase DDX3X 1 QSSGAS(0.125)S(0.409)S(0.057)S(0.409)FSSSR 147.53 2.63E-05 4629200 1813.7 1943.4 2235.3 2176.3 2069.7 1803.4 1618.8 2081.1 1850.2 2057.3 TRUE FALSE 1839.097396 2155.586984 1670.970869 2036.721859 2351.62818 2123.207669 1925.958849 1904.297565 2027.919977 1638.021131 1.122755599 1.315970193 1.020115576 1.243403898 1.435651919 1.296202857 1.175783885 1.162559829 1.238030413 1 10.67773825 -11.2524549 6.162593688 0.999994414 1.22591502 0.277099239 0.108173385 8.63E-06 1.05E-06 0.108814859 0.026390828 5.59E-12 11.2524549 0.225920606 QSSGASSSS(ph)FSSSR ddPTM_K562_Paclitaxel_30min_R1 2 QSSGASSSSFSSSR 14 0 A0A2R8Y4A4;A0A2R8YFS5;A0A2R8YDT5;A0A2R8YFR4;A0A2R8YCW1;A0A2R8Y5G6;A0A0J9YVQ7;O00571;A0A2R8YF78;A0A2R8Y645;A0A2U3TZJ9;A0A0D9SG12;A0A0D9SFB3;F6S8Q4;A0A2R8Y7T2;A0A0D9SF53;O00571-2;A0A087WVZ1 A0A2R8Y4A4 DDX3X ATP-dependent RNA helicase DDX3X 1 QSSGAS(0.106)S(0.35)S(0.046)S(0.498)FSSSR;QSS(0.004)GAS(0.1)S(0.053)S(0.028)S(0.815)FSSSR 145.94 1.30E-05 14971600 5109.5 4372.6 5063.4 5000.9 4187.5 4618.7 4712 5002.2 4363.4 6193.6 TRUE FALSE 5181.048764 4850.015255 3785.082047 4680.164657 4757.908395 5437.761595 5606.077402 4577.231887 4782.524066 4931.34092 1.050636905 0.983508407 0.767556352 0.949065322 0.964830555 1.102694314 1.136826168 0.928192141 0.969822234 1 12.26776428 -7.037821049 6.243263639 1.030597887 0.931821724 0.193712047 0.087000129 0.340866389 38.54592392 0.030819339 0.031619651 9.17E-08 7.037821049 -0.098776163 QSST(ph)AASSSSSANS(ph)GAR ddPTM_K562_Paclitaxel_30min_R1 1 QSSTAASSSSSANSGAR 17 0 Q6UWI4 Q6UWI4 SHISA2 Protein shisa-2 homolog 2 QS(0.256)S(0.326)T(0.418)AASSSSSANS(0.999)GAR 82.859 0.0261 63728000 126.35 0 0 122.34 0 0 0 0 0 61.082 TRUE FALSE 128.1192898 0 0 114.49366 0 0 0 0 0 48.63345487 2.634385942 0 0 2.354216049 0 0 0 0 0 1 5.603877178 -5.255852516 24.55374871 0.356776991 2.634387203 0.464982344 0.727635062 444.1358879 1951860.473 0.186149747 1.571913206 5.55E-06 5.255852516 2.277610212 QSSVTQVTEQS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 QSSVTQVTEQSPK 13 0 Q14966-3;Q14966;C9JWN0;Q14966-2;Q14966-6;Q14966-4 Q14966-3 ZNF638 Zinc finger protein 638 1 QSSVTQVT(0.006)EQS(0.994)PK;QSSVTQVTEQS(1)PK 218.2 2.73E-16 24395000 6012.8 4585.5 9132.2 5992 5140.6 4888.9 4310.3 6040.8 4525.7 8428.7 TRUE FALSE 6096.997751 5086.160397 6826.663164 5607.699939 5840.836751 5755.877771 5128.156924 5527.596335 4960.413706 6710.926313 0.908518059 0.757892452 1.017246032 0.835607437 0.870347323 0.857687524 0.764150385 0.823671141 0.739154846 1 12.7122962 -7.538552043 23.62733401 0.816174121 0.875380745 0.045098858 0.088950092 318.8006628 480580.7836 0.031992247 0.024791989 2.89E-08 7.538552043 0.059206624 QSTLYSFFPKSPALS(ph)DANK ddPTM_K562_Paclitaxel_30min_R1 1 QSTLYSFFPKSPALSDANK 19 1 F8WAX8;P52701-2;P52701;F8W7G9;A0A087WWJ1;P52701-3 F8WAX8 MSH6 DNA mismatch repair protein Msh6 1 QSTLYSFFPKS(0.384)PALS(0.616)DANK 82.362 0.0038616 14841000 1452.6 1039 3076.7 1731.1 1195.6 1073.7 660.61 1428.1 1534.2 2130 TRUE FALSE 1472.940882 1152.441534 2299.949033 1620.074994 1358.460962 1264.10562 785.9572989 1306.773991 1681.566765 1695.904831 0.86852803 0.679543753 1.356178125 0.955286502 0.801024289 0.745387121 0.463444224 0.770546771 0.991545477 1 10.7278395 -6.797679958 4.420703361 0.761669146 0.97376233 0.12525222 0.210507949 0.380745274 16.50685851 0.068601009 0.081502013 1.59E-07 6.797679958 0.212093184 QSWPTKIDVPQDLEDDLTATPLSHATVPQS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 1 QSWPTKIDVPQDLEDDLTATPLSHATVPQSPAR 33 1 E7EUC4;Q9NRH2 E7EUC4 SNRK SNF-related serine/threonine-protein kinase 1 QSWPTKIDVPQDLEDDLT(0.017)AT(0.017)PLS(0.086)HAT(0.056)VPQS(0.824)PAR 47.288 0.0071756 5081500 1193.5 852.28 1919.5 1477.3 1329.3 1250.8 1245.8 1214.3 1864 2035.2 TRUE FALSE 1210.212682 945.3348126 1434.898485 1382.55259 1510.373165 1472.611818 1482.184046 1111.137636 2043.045529 1620.425123 0.746848876 0.583386915 0.885507429 0.853203626 0.932084515 0.908781157 0.91468839 0.685707485 1.260808352 1 10.66215664 -3.855931089 0.257887844 1.011597169 7.81E-15 0.351390567 0.141405294 22.86533951 0.715700018 0.17858962 8.338485597 0.000139338 3.855931089 -1.011597169 QSYLTLES(ph)GAVPLLEDTAS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 QSYLTLESGAVPLLEDTASR 20 0 G3V4T3;A0A0C4DGK3;G3V5X4;A0A0A0MRE3;Q8WXH0-7;Q8WXH0;Q8WXH0-2 G3V4T3 SYNE2 Nesprin-2 2 QS(0.079)Y(0.042)LT(0.199)LES(0.68)GAVPLLEDT(0.057)AS(0.943)R 69.47 0.030223 30554000 598.28 696 696.92 567.61 814.75 795.79 495.65 524.99 452.29 678.17 TRUE FALSE 606.6577659 771.9916337 520.9739266 531.2060351 925.7327438 936.9121831 589.697 480.3888226 495.7344754 539.9585817 1.123526482 1.429723797 0.964840534 0.983790337 1.714451395 1.735155648 1.092115247 0.889677169 0.918097225 1 9.076704937 -7.992619939 24.99214544 0.940511491 1.323939249 0.333738906 0.249846531 225.6967083 764306.0136 0.115954351 0.078000305 1.02E-08 7.992619939 0.383427759 QT(ph)PRSPDSTANVR ddPTM_K562_Paclitaxel_30min_R1 1 QTPRSPDSTANVR 13 1 B7ZM87;O75044;E9PDX4;A0A087WW56;A0A286YEY3;A0A075B7B5;P0DMP2 B7ZM87 SRGAP2;SRGAP2B SLIT-ROBO Rho GTPase-activating protein 2;SLIT-ROBO Rho GTPase-activating protein 2B 1 QT(0.552)PRS(0.21)PDS(0.132)T(0.106)ANVR 108.36 7.18E-05 0 445.27 640.77 641.83 669.56 770.04 633.38 436.19 536.54 656.31 694.9 TRUE FALSE 451.5051538 710.7314355 479.7920784 626.6174184 874.9324849 745.7010499 518.9547754 490.957578 719.351508 553.2789986 0.816053302 1.284580541 0.867179271 1.132552329 1.581358568 1.347784846 0.93796218 0.887359866 1.300160515 1 9.111863353 -4.293238807 15.56391719 1.125104219 1.107310436 0 0.241478965 0 0 0.057121606 0 5.09E-05 4.293238807 -0.017793784 QT(ph)SPDPCPQLPLVPR ddPTM_K562_Paclitaxel_30min_R1 1 QTSPDPCPQLPLVPR 15 0 A0A1W2PQC8;Q5D1E8 A0A1W2PQC8 ZC3H12A Ribonuclease ZC3H12A 1 QT(0.681)S(0.319)PDPCPQLPLVPR 127.05 0.00039651 19968000 889.12 938.21 803.87 967.43 762.07 901.28 895.34 793.07 881.17 1067.9 TRUE FALSE 901.5704232 1040.646941 600.9230764 905.3833699 865.876836 1061.109353 1065.226091 725.6937533 965.8103157 850.2613938 1.060345007 1.223914138 0.706750984 1.064829447 1.018365461 1.247980164 1.252821895 0.853494888 1.135898116 1 9.731762623 QTAEETGLT(ph)PLETSR ddPTM_K562_Paclitaxel_30min_R1 1 QTAEETGLTPLETSR 15 0 Q5T8C6;Q13042-4;Q13042-3;Q13042-2;Q13042 Q5T8C6 CDC16 Cell division cycle protein 16 homolog 1 QTAEET(0.068)GLT(0.928)PLET(0.002)S(0.002)R 101.78 0.010788 13608000 811.8 517.21 1489.8 725.98 569.81 519.8 653.5 845.42 634.35 670.99 TRUE FALSE 823.1677046 573.6807369 1113.681564 679.4188922 647.427769 611.9792316 777.4982135 773.5962941 695.2821519 534.2418697 1.54081466 1.07382212 2.084601802 1.271744 1.211862652 1.145509677 1.455329987 1.44802633 1.301437029 1 9.061349237 -14.09262801 0.146909261 2.14E-15 1.525383834 0.184313766 0.265594476 188.7930288 2.130407181 57.9048811 1.516288396 8.08E-15 14.09262801 1.525383834 QTAVS(ph)PVQACSEHTSTR ddPTM_K562_Paclitaxel_30min_R1 4 QTAVSPVQACSEHTSTR 17 0 A0A3B3IU55 A0A3B3IU55 1 QT(0.001)AVS(0.999)PVQACSEHTSTR;QT(0.03)AVS(0.97)PVQACSEHTSTR;QT(0.069)AVS(0.931)PVQACSEHTSTR;QT(0.002)AVS(0.998)PVQACSEHTSTR 212.47 5.10E-23 123558000 6035.8 5155.65 6745.6 5770.62 5155.87 5363.24 4967.7 5756.64 5779.08 6184.7 TRUE FALSE 6120.319822 5718.561302 5042.589851 5400.518262 5858.186784 6314.33531 5910.295142 5267.5775 6334.186456 4924.254745 1.242892608 1.161304928 1.024031069 1.096717887 1.18965957 1.282292578 1.200241549 1.069720754 1.286323877 1 12.26568968 -5.2791668 5.394160276 1.149474166 1.245587244 0.087922211 0.09372345 0.384904557 38.77631296 0.023680694 0.129214314 5.26E-06 5.2791668 0.096113078 QTGPIS(ph)AT(ph)LVMT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 QTGPISATLVMTR 13 0 G3XA98;G3V4U0;Q9UBX5 G3XA98 FBLN5 Fibulin-5 3 QT(0.001)GPIS(0.999)AT(1)LVMT(1)R 85.45 0.014174 79828000 1559.5 2184 1538 1656.2 1911.3 1816.8 1886 2184.5 1596.8 2303.7 TRUE FALSE 1581.337811 2422.456506 1149.712878 1549.978745 2171.651419 2138.983971 2243.858654 1998.91309 1750.179775 1834.204675 0.862138142 1.320712207 0.626818203 0.845041323 1.183974421 1.166164278 1.223341476 1.089798274 0.954190008 1 10.84093892 -6.763198598 24.99999495 1.116585477 0.922261425 0.211721816 0.177399471 76.35190145 1085028.302 0.055290579 0.065988795 1.73E-07 6.763198598 -0.194324052 QTLRADS(ph)T(ph)T(ph)LS(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 QTLRADSTTLSK 12 1 A0A590UK20;Q9BXX2 A0A590UK20 ANKRD30B Ankyrin repeat domain-containing protein 30B 4 QT(0.001)LRADS(1)T(1)T(0.999)LS(1)K 73.219 0.020484 76580000 72.76 128.94 290.44 188.58 144.5 186.55 183.37 210.72 0 276.08 TRUE FALSE 73.77886448 143.0181052 217.1148299 176.4853229 164.1833464 219.6320232 218.1635002 192.8180207 0 219.8147445 0.335641108 0.650630173 0.987717318 0.802882096 0.746916895 0.999168749 0.992488019 0.8771842 0 1 7.780144351 -5.370352877 3.340907475 0.809107883 0.320112081 0.196800162 0.283661577 0.425753382 7.6805225 0.071726345 0.44240502 4.26E-06 5.370352877 -0.488995802 QTNGCLNGYT(ph)PSR ddPTM_K562_Paclitaxel_30min_R1 1 QTNGCLNGYTPSR 13 0 A0A2R8Y653;Q9BZX2-2;Q9BZX2 A0A2R8Y653 UCK2 Uridine-cytidine kinase 2 1 QTNGCLNGYT(0.992)PS(0.008)R 143.93 0.00012439 31587000 1090.6 1000.5 908.85 1019.3 722.85 785.83 821.43 990.76 856.31 1389.4 TRUE FALSE 1105.871765 1109.737973 679.399577 953.9266602 821.314408 925.1859169 977.2920543 906.5887539 938.5624016 1106.239517 0.999667565 1.003162476 0.61415233 0.862314757 0.742438138 0.836334178 0.883436217 0.819523023 0.84842603 1 10.11144807 -10.49751672 12.93282455 1.00000802 0.840874272 0.155712159 0.107447668 0 0 0.106049515 0.025720785 3.18E-11 10.49751672 -0.159133747 QTNGCLNGYTPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 QTNGCLNGYTPSR 13 0 A0A2R8Y653;Q9BZX2-2;Q9BZX2 A0A2R8Y653 UCK2 Uridine-cytidine kinase 2 1 QTNGCLNGYT(0.36)PS(0.64)R 114.54 0.0034817 24667000 1302.7 869.01 1356.4 1056.3 1003.7 986.94 1178.8 1280.3 985.84 1220.8 TRUE FALSE 1320.941819 963.8914506 1013.960044 988.5536458 1140.420933 1161.959952 1402.471146 1171.530524 1080.534337 972.0002899 1.358993236 0.991657575 1.043168459 1.017030197 1.173272215 1.195431693 1.442871119 1.205277957 1.111660509 1 9.924812934 -6.960760471 5.977181736 1.216181626 1.090256639 0.065335962 0.141128126 0.372048905 34.7295639 0.044481185 0.050046542 1.09E-07 6.960760471 -0.125924987 QTQT(ph)PDLLPEALEAQVLPR ddPTM_K562_Paclitaxel_30min_R1 1 QTQTPDLLPEALEAQVLPR 19 0 H0Y5D5;A0A494C0L7;Q9BTG3;Q5SYW2;F5H2X7;Q9ULV3-5;Q9ULV3-3;Q9ULV3-4;Q9ULV3-2;Q9ULV3 H0Y5D5 CIZ1 Cip1-interacting zinc finger protein 1 QT(0.037)QT(0.963)PDLLPEALEAQVLPR 83.776 0.011487 8467600 312.7 496.48 412.47 460.8 456.94 408.08 362.82 567.61 459.4 411.28 TRUE FALSE 317.0787648 550.6873654 308.3368471 431.2463505 519.1829641 480.4472583 431.663201 519.3879876 503.5274227 327.4609102 0.968295008 1.681688862 0.941598944 1.316939937 1.585480733 1.46718965 1.318212915 1.586106834 1.537671847 1 8.355178889 -6.528820161 24.38267583 1.443541676 1.226248018 0.126013406 0.248459044 216.9143808 890176.5367 0.06897403 0.089324268 2.96E-07 6.528820161 -0.217293658 QTS(ph)GMEYKK ddPTM_K562_Paclitaxel_30min_R1 1 QTSGMEYKK 9 1 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 1 QTS(1)GMEYKK 106.62 0.015534 15469000 2526.3 2509.1 2477.5 2264.4 2164.7 2245.2 2336.3 2042.6 2385.9 2410.6 TRUE FALSE 2561.675994 2783.052023 1852.024484 2119.171519 2459.568789 2643.354696 2779.600729 1869.06838 2615.076355 1919.318397 1.334680061 1.450021022 0.96493864 1.104127133 1.281480338 1.377236159 1.448222834 0.973818822 1.362502626 1 10.90637835 -11.41585193 0.635381478 0.892964306 1.251728994 0.163573472 0.171953383 134.2766831 21.9873083 24.2072089 0.069175095 3.84E-12 11.41585193 0.358764688 QTS(ph)PTPASPSPPAAPCPFVAR ddPTM_K562_Paclitaxel_30min_R1 1 QTSPTPASPSPPAAPCPFVAR 21 0 Q92545 Q92545 TMEM131 Transmembrane protein 131 1 QT(0.176)S(0.688)PT(0.129)PAS(0.007)PSPPAAPCPFVAR 124.99 2.49E-07 9357600 354.09 404.52 503.7 463.4 277.44 386.63 474.65 591.99 323.16 523.79 TRUE FALSE 359.0483525 448.6868616 376.5347053 433.6795981 315.2320251 455.1934019 564.7123597 541.6967544 354.2009619 417.0413105 0.860941934 1.075881095 0.90287148 1.039896018 0.755877217 1.091482763 1.354092138 1.298904307 0.849318648 1 8.704046488 -7.508856077 24.4855714 1.160816034 0.938620572 0.259141234 0.157835582 623.8744222 1089377.467 0.056176832 0.047592467 3.10E-08 7.508856077 -0.222195462 QTSNPNGPTPQY(ph)QTTAR ddPTM_K562_Paclitaxel_30min_R1 1 QTSNPNGPTPQYQTTAR 17 0 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 QTSNPNGPT(0.497)PQY(0.498)QT(0.005)TAR 106.55 0.0020466 1013700 330.72 264.07 327.35 454.84 222.71 215.16 194 405.22 429.85 417.44 TRUE FALSE 335.3511004 292.9020556 244.7064439 425.6685982 253.0468725 253.315605 230.8104873 370.7940317 471.1390131 332.3654989 1.008982886 0.881264923 0.736257057 1.280724382 0.761351203 0.762159748 0.694447793 1.115621305 1.417532851 1 8.376626821 -8.476586757 7.419579809 1.22819286 0.878131175 0.361718054 0.186589314 0.247489768 35.19820344 0.104650545 0.048771584 3.34E-09 8.476586757 -0.350061685 QTVPSENIPLPECS(ph)SPPSCKR ddPTM_K562_Paclitaxel_30min_R1 1 QTVPSENIPLPECSSPPSCKR 21 1 A0A494C142;Q99728-3;Q99728-2;Q99728 A0A494C142 BARD1 BRCA1-associated RING domain protein 1 1 QTVPSENIPLPECS(0.84)S(0.159)PPSCKR 115.2 1.67E-05 9664800 762.54 740.37 1448.7 959.92 587.36 760.18 469.59 934.89 946.56 1050.7 TRUE FALSE 773.2179126 821.2061004 1082.957768 898.3550276 667.3683761 894.9872495 558.6922511 855.4652591 1037.481317 836.5667633 0.9242752 0.981638449 1.294526409 1.073859334 0.797746702 1.069833621 0.667839407 1.022590541 1.240165595 1 9.708336871 -5.363551487 5.31651006 1.01248184 0.927172866 0.025681261 0.174366542 1.050495664 41.093232 0.045342272 0.196265509 4.33E-06 5.363551487 -0.085308974 QVAEQGGDLS(ph)PAANR ddPTM_K562_Paclitaxel_30min_R1 4 QVAEQGGDLSPAANR 15 0 O94804 O94804 STK10 Serine/threonine-protein kinase 10 1 QVAEQGGDLS(1)PAANR;QVAEQGGDLS(1)PAANR;QVAEQGGDLS(1)PAANR;QVAEQGGDLS(1)PAANR 189.45 4.75E-07 243478800 6366.04 7125.26 8561 7632.2 6545.25 6350.43 6185.34 7281.26 7166.76 7945.3 TRUE FALSE 6455.184201 7903.219983 6399.669669 7142.704852 7436.823862 7476.589596 7358.975975 6662.671515 7855.15932 6326.043499 1.020414134 1.249314834 1.011638581 1.129095121 1.17558848 1.181874516 1.163282544 1.053213042 1.241717564 1 12.62708776 -5.111875389 15.84344785 1.135370257 1.018481174 0.143298295 0.08323232 34884.82038 3589019.767 0.019267563 4264.552895 7.73E-06 5.111875389 -0.116889083 QVAGDAPVEQAT(ph)AETASPVHREEHGR ddPTM_K562_Paclitaxel_30min_R1 1 QVAGDAPVEQATAETASPVHREEHGR 26 1 Q92766-4;Q92766-2;A0A087X055;Q92766 Q92766-4 RREB1 Ras-responsive element-binding protein 1 1 QVAGDAPVEQAT(0.898)AET(0.051)AS(0.051)PVHREEHGR 73.574 0.00032348 105580000 6776.4 7216.4 9036.4 8004.4 7076.3 6997.3 7146.2 7692.6 6548.2 9161.3 TRUE FALSE 6871.290507 8004.310956 6755.049059 7491.03361 8040.211863 8238.172908 8502.154144 7039.065614 7177.183868 7294.222031 0.942018282 1.097349508 0.926082183 1.026981846 1.102271336 1.129410768 1.165601226 0.965019379 0.983954675 1 12.8325384 -5.242131128 23.46646657 1.047043107 0.94201806 0.145978691 0.073740388 3907.697382 4749084.625 0.019679513 0.629762952 5.73E-06 5.242131128 -0.105025047 QVAGDAPVEQATAET(ph)ASPVHREEHGR ddPTM_K562_Paclitaxel_30min_R1 1 QVAGDAPVEQATAETASPVHREEHGR 26 1 Q92766-4;Q92766-2;A0A087X055;Q92766 Q92766-4 RREB1 Ras-responsive element-binding protein 1 1 QVAGDAPVEQAT(0.058)AET(0.471)AS(0.471)PVHREEHGR 60.33 0.006639 99273000 4167.3 3898 5711.4 4902.7 4181.8 4120.1 4406.2 5284.1 3905 5225.7 TRUE FALSE 4225.655057 4323.596822 4269.486432 4588.262766 4751.431958 4850.741886 5242.253448 4835.182723 4280.092698 4160.699472 1.015611698 1.039151434 1.026146315 1.102762359 1.141979129 1.165847694 1.259945229 1.16210814 1.02869547 1 12.02261037 -6.417180153 2.551990811 1.143104918 1.026402027 0.271934322 0.06962099 0.337253817 4.282578371 0.021533724 0.034538727 3.83E-07 6.417180153 -0.116702892 QVAGDAPVEQATAETAS(ph)PVHR ddPTM_K562_Paclitaxel_30min_R1 2 QVAGDAPVEQATAETASPVHR 21 0 Q92766-4;Q92766-2;A0A087X055;Q92766 Q92766-4 RREB1 Ras-responsive element-binding protein 1 1 QVAGDAPVEQATAET(0.092)AS(0.908)PVHR;QVAGDAPVEQATAET(0.389)AS(0.611)PVHR 210.84 2.98E-31 293600000 3942.5 3988.6 5070.3 4555.3 3839.9 3846 4566.5 5143.3 2759.5 5753.4 TRUE FALSE 3997.707164 4424.088837 3790.240056 4263.143447 4362.95939 4528.034099 5432.969536 4706.344562 3024.562305 4580.853922 0.872699115 0.965778196 0.827409064 0.930643832 0.952433643 0.988469438 1.186016762 1.027394595 0.66026168 1 12.16140084 -6.782562112 2.547665524 0.985582035 0.895316786 0.068660689 0.126000418 0.761660006 10.12683581 0.043070613 0.053719191 1.65E-07 6.782562112 -0.090265249 QVAGDAPVEQATAETAS(ph)PVHREEHGR ddPTM_K562_Paclitaxel_30min_R1 1 QVAGDAPVEQATAETASPVHREEHGR 26 1 Q92766-4;Q92766-2;A0A087X055;Q92766 Q92766-4 RREB1 Ras-responsive element-binding protein 1 1 QVAGDAPVEQATAET(0.309)AS(0.69)PVHREEHGR 96.61 1.31E-05 23793000 1352.8 1583.1 2088.9 1563.3 1379.4 1312.4 1931.9 1641.2 1052.9 1669 TRUE FALSE 1371.743374 1755.948212 1561.53136 1463.036935 1567.297633 1545.135713 2298.46794 1501.769816 1154.035749 1328.856884 1.032273219 1.321397536 1.175093706 1.100974042 1.179432979 1.162755547 1.729658 1.130121561 0.868442466 1 10.37597002 -8.535706175 13.79034934 0.955796697 1.246570288 0.309774196 0.182296567 1.598602874 1703.953036 0.124108933 0.047584614 2.91E-09 8.535706175 0.290773591 QVDLESNPQNRS(ph)PESRPSVVYPSTK ddPTM_K562_Paclitaxel_30min_R1 2 QVDLESNPQNRSPESRPSVVYPSTK 25 2 J3QS41;P42694 J3QS41 HELZ Probable helicase with zinc finger domain 1 QVDLES(0.017)NPQNRS(0.982)PESRPSVVYPSTK;QVDLES(0.009)NPQNRS(0.991)PESRPSVVYPSTK 114.78 3.64E-07 50287000 1480.42 1342.67 2436.4 1569.24 1398.27 1151.6 1058.78 1593.5 907.1 2250.7 TRUE FALSE 1501.150447 1489.267251 1821.300687 1468.59597 1588.738047 1355.820091 1259.677978 1458.122229 994.231008 1792.006105 0.837692709 0.831061483 1.016347368 0.819526209 0.886569551 0.756593455 0.702942905 0.813681508 0.554814521 1 10.80735984 -7.274203937 7.478261098 0.749790785 0.880127789 0.185830955 0.11550611 0.23833308 86.18282635 0.037843881 0.034627818 5.32E-08 7.274203937 0.130337004 QVHPDTGIS(ph)SK ddPTM_K562_Paclitaxel_30min_R1 1 QVHPDTGISSK 11 0 Q99880;Q99877;Q5QNW6-2;P57053;O60814;P58876;P62807;Q5QNW6;Q93079;U3KQK0;Q99879;P06899;P23527;P33778;Q16778;Q8N257;Q96A08 Q99880 HIST1H2BL;HIST1H2BN;HIST2H2BF;H2BFS;HIST1H2BK;HIST1H2BD;HIST1H2BC;HIST1H2BH;HIST1H2BM;HIST1H2BJ;HIST1H2BO;HIST1H2BB;HIST2H2BE;HIST3H2BB;HIST1H2BA Histone H2B type 1-L;Histone H2B type 1-N;Histone H2B type 2-F;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-M;Histone H2B type 1-J;Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 3-B;Histone H2B type 1-A 1 QVHPDTGIS(0.581)S(0.419)K 101.61 0.0063893 8325800 3690.7 3287.8 6240 4399.4 3382.4 2565.6 2605.3 3868 2959 3562.1 TRUE FALSE 3742.381187 3646.773123 4664.634825 4117.242175 3843.140145 3020.573137 3099.642074 3539.389257 3243.225171 2836.142065 1.319532344 1.285821739 1.644711273 1.451705197 1.355059111 1.065028855 1.092907902 1.247959085 1.143534103 1 11.46971408 -7.131085949 4.189233381 1.12508205 1.428512437 0.663438377 0.107793511 0.159566143 4.66955112 0.038648272 0.038875565 7.39E-08 7.131085949 0.303430387 QVHPDTGISSK ddPTM_K562_Paclitaxel_30min_R1 3 QVHPDTGISSK 11 0 Q99880;Q99877;Q5QNW6-2;P57053;O60814;P58876;P62807;Q5QNW6;Q93079;U3KQK0;Q99879;P06899;P23527;P33778;Q16778;Q8N257;Q96A08 Q99880 HIST1H2BL;HIST1H2BN;HIST2H2BF;H2BFS;HIST1H2BK;HIST1H2BD;HIST1H2BC;HIST1H2BH;HIST1H2BM;HIST1H2BJ;HIST1H2BO;HIST1H2BB;HIST2H2BE;HIST3H2BB;HIST1H2BA Histone H2B type 1-L;Histone H2B type 1-N;Histone H2B type 2-F;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-M;Histone H2B type 1-J;Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 2-E;Histone H2B type 3-B;Histone H2B type 1-A 0 ;; 167.71 0.0007161 117024000 31644.6 27710.1 48197 34995.9 26433 24439.2 23990.8 32585 28105.1 37395.5 FALSE TRUE 32087.72203 30735.58243 36029.07126 32751.41961 30033.62211 28773.14898 28542.92906 29816.70086 30804.72043 29774.27657 1.077699468 1.032286455 1.210073775 1.099990441 1.008710389 0.96637609 0.958643915 1.001424864 1.034608527 1 14.86177883 -6.78803776 4.462289235 0.990319276 1.108261773 0.583494737 0.045693881 0.147653892 6.792191175 0.014990873 0.017928133 1.63E-07 6.78803776 0.117942497 QVIEEQTTSHES(ph)Q ddPTM_K562_Paclitaxel_30min_R1 2 QVIEEQTTSHESQ 13 0 R4GN33;Q8IW41-2;Q8IW41 R4GN33 MAPKAPK5 MAP kinase-activated protein kinase 5 1 QVIEEQTTSHES(1)Q;QVIEEQTTS(0.001)HES(0.999)Q 141.06 4.21E-05 33535000 3336.7 3431 3879.2 3535.8 2888.5 2566.6 3131 3857 3170.2 3435.1 TRUE FALSE 3383.424095 3805.608183 2899.847983 3309.029614 3281.962603 3021.750473 3725.090905 3529.323775 3474.711875 2735.024734 1.237072576 1.39143465 1.060263897 1.209871915 1.199975474 1.104834788 1.361995326 1.290417498 1.270449891 1 11.41733816 -5.738562965 24.99996113 1.202161409 1.314253531 0.166333187 0.109751574 462.5552086 505485.1262 0.027665257 0.073088186 1.83E-06 5.738562965 0.112092122 QVIQRDYME ddPTM_K562_Paclitaxel_30min_R1 1 QVIQRDYME 9 1 F5H5G7;G3XAP5 F5H5G7 LDHC L-lactate dehydrogenase 0 60.76 0.027177 0 3049.4 3431.5 3177.2 3397.8 2878.3 3263.2 2649 2977.7 2657.9 3501.5 FALSE TRUE 3092.101008 3806.162775 2375.076565 3179.880316 3270.37319 3841.882702 3151.633921 2724.725799 2913.203171 2787.892378 1.109117781 1.365247384 0.851925485 1.140603684 1.173062926 1.378059904 1.130471874 0.977342533 1.044948217 1 11.44495915 -8.156101684 5.249102872 1.009428638 1.169452291 0.216006215 0.137847053 0.368874062 14.96454022 0.068550532 0.038785857 6.98E-09 8.156101684 0.160023653 QVLTAPGS(ph)AGQPRS(ph)EDEDSLEEAGSPAPGPCPR ddPTM_K562_Paclitaxel_30min_R1 1 QVLTAPGSAGQPRSEDEDSLEEAGSPAPGPCPR 33 1 Q8TBB5-2;Q8TBB5-3;Q8TBB5 Q8TBB5-2 KLHDC4 Kelch domain-containing protein 4 2 QVLT(0.105)APGS(0.706)AGQPRS(0.717)EDEDS(0.465)LEEAGS(0.007)PAPGPCPR 57.919 0.00099243 36097000 759.35 716.8 779.43 981.56 562.59 632.36 670.22 811.57 880.49 958.21 TRUE FALSE 769.9832428 795.0626481 582.6532566 918.6071349 639.2242827 744.5001672 797.3907462 742.6220628 965.0649986 762.926276 1.009249867 1.042122513 0.763708467 1.20405754 0.837858523 0.975848114 1.045174051 0.973386402 1.264951843 1 9.575399841 -8.720755955 24.99861066 1.132476279 0.980766085 0.184541091 0.127003304 201.6966382 123936.0872 0.079770075 0.030149493 1.90E-09 8.720755955 -0.151710194 QVLTAPGS(ph)AGQPRSEDEDS(ph)LEEAGSPAPGPCPR ddPTM_K562_Paclitaxel_30min_R1 3 QVLTAPGSAGQPRSEDEDSLEEAGSPAPGPCPR 33 1 Q8TBB5-2;Q8TBB5-3;Q8TBB5 Q8TBB5-2 KLHDC4 Kelch domain-containing protein 4 2 QVLT(0.031)APGS(0.639)AGQPRS(0.348)EDEDS(0.979)LEEAGS(0.003)PAPGPCPR;QVLT(0.075)APGS(0.636)AGQPRS(0.609)EDEDS(0.678)LEEAGS(0.002)PAPGPCPR;QVLT(0.029)APGS(0.944)AGQPRS(0.12)EDEDS(0.904)LEEAGS(0.002)PAPGPCPR 68.326 0.00012827 289546000 2560.59 2517.35 3500.88 3224.08 2255.51 2315.55 2700.24 3178.19 2911 2984.28 TRUE FALSE 2596.44616 2792.202786 2617.039546 3017.301939 2562.748648 2726.180281 3212.596444 2908.182922 3190.614557 2376.082098 1.092742613 1.175128919 1.101409563 1.269864346 1.078560648 1.147342629 1.352056163 1.22394042 1.342804846 1 11.21436897 -7.601696251 24.99642917 1.248554557 1.146270098 0.13026076 0.10370705 53.84339208 17072.9153 0.036835833 0.028532912 2.50E-08 7.601696251 -0.102284459 QVLTAPGSAGQPRS(ph)EDEDS(ph)LEEAGSPAPGPCPR ddPTM_K562_Paclitaxel_30min_R1 1 QVLTAPGSAGQPRSEDEDSLEEAGSPAPGPCPR 33 1 Q8TBB5-2;Q8TBB5-3;Q8TBB5 Q8TBB5-2 KLHDC4 Kelch domain-containing protein 4 2 QVLT(0.021)APGS(0.35)AGQPRS(0.632)EDEDS(0.963)LEEAGS(0.034)PAPGPCPR 44.278 0.025513 14395000 437.68 460.03 276.61 511.95 325.42 377.99 257.95 282.2 472.97 596.66 TRUE FALSE 443.8088704 510.2576311 206.7763844 479.1158184 369.7477134 445.0212193 306.8946659 258.2253486 518.4008818 475.0603645 0.934215741 1.074090093 0.435263389 1.008536713 0.778317328 0.93676773 0.646011936 0.543563235 1.0912316 1 8.891967034 -7.728051188 24.99190262 0.7821646 0.854444493 0 0.220245371 957.3410796 716592.7922 0.082587814 0.063968397 1.87E-08 7.728051188 0.072279893 QVLTAPGSAGQPRS(ph)EDEDSLEEAGSPAPGPCPR ddPTM_K562_Paclitaxel_30min_R1 1 QVLTAPGSAGQPRSEDEDSLEEAGSPAPGPCPR 33 1 Q8TBB5-2;Q8TBB5-3;Q8TBB5 Q8TBB5-2 KLHDC4 Kelch domain-containing protein 4 1 QVLTAPGS(0.024)AGQPRS(0.973)EDEDS(0.002)LEEAGS(0.001)PAPGPCPR 88.531 1.80E-08 83944000 696.23 697.97 669.58 755.99 570.12 676.18 642.85 820.79 701.55 967.15 TRUE FALSE 705.9793681 774.176725 500.5362477 707.5041851 647.7799962 796.091029 764.8274316 751.0587663 768.9370121 770.0442991 0.916803577 1.005366478 0.650009679 0.918783745 0.841224326 1.033824976 0.993225237 0.975344882 0.998562048 1 9.588797633 -7.258333147 24.82814099 0.998215099 0.865040181 0.376926929 0.085955757 283.762118 2268118.408 0.029295811 0.028096291 5.52E-08 7.258333147 -0.133174918 QVPGGGGGGGSGGGGGS(ph)GGGGSGGGR ddPTM_K562_Paclitaxel_30min_R1 1 QVPGGGGGGGSGGGGGSGGGGSGGGR 26 0 K7EN53;K7EQC2;Q9UHB9-4;Q9UHB9-2;Q9UHB9 K7EN53 SRP68 Signal recognition particle subunit SRP68 1 QVPGGGGGGGS(0.309)GGGGGS(0.674)GGGGS(0.016)GGGR 157.55 4.91E-49 0 236.55 285.53 246.14 278.58 194.98 295.85 230.69 325.58 191.94 305.87 TRUE FALSE 239.8624298 316.705131 183.9989128 260.7131257 221.539577 348.3148436 274.4622232 297.9199468 210.3766946 243.5335261 0.984925705 1.300458036 0.755538327 1.070543058 0.909688208 1.43025418 1.126999751 1.223322109 0.86385106 1 7.927976585 QVPGGGGGGGSGGGGGSGGGGS(ph)GGGR ddPTM_K562_Paclitaxel_30min_R1 1 QVPGGGGGGGSGGGGGSGGGGSGGGR 26 0 K7EN53;K7EQC2;Q9UHB9-4;Q9UHB9-2;Q9UHB9 K7EN53 SRP68 Signal recognition particle subunit SRP68 1 QVPGGGGGGGS(0.006)GGGGGS(0.242)GGGGS(0.751)GGGR 137.86 6.60E-22 0 277.49 253.69 247.91 292.08 384.15 322.65 316.01 159.7 228.71 376.65 TRUE FALSE 281.3757161 281.3887321 185.3220544 273.3472961 436.4777337 379.8674473 375.9712478 146.1324882 250.6786174 299.8885233 0.938267704 0.938311107 0.617969812 0.911496356 1.455466615 1.266695515 1.253703355 0.487289365 0.835906005 1 8.228282501 -8.254914543 24.96752681 0.746198263 1.051371947 0.206726581 0.249613573 827.598833 3166851.319 0.134053047 0.075015307 5.56E-09 8.254914543 0.305173684 QVS(ph)ASELHTSGILGPETLR ddPTM_K562_Paclitaxel_30min_R1 3 QVSASELHTSGILGPETLR 19 0 A0A075B730;P58107 A0A075B730 EPPK1 Epiplakin 1 QVS(0.761)AS(0.075)ELHT(0.162)S(0.002)GILGPETLR;QVS(0.969)AS(0.031)ELHTSGILGPETLR;QVS(0.5)AS(0.5)ELHTSGILGPETLR 172.5 9.42E-14 298577000 3620.2 3513.8 4151.3 3798.19 4375.6 3639.44 3129.64 3449.76 2851.82 4035.1 TRUE FALSE 3670.893969 3897.448567 3103.252972 3554.591093 4971.6308 4284.843584 3723.472852 3156.681355 3125.750053 3212.744405 1.142603801 1.213121268 0.965919657 1.106403325 1.547471623 1.333701983 1.158969523 0.982549795 0.972922106 1 11.64959049 -8.1850844 3.922554422 0.98150382 1.218001365 0.345690892 0.143096306 0.298627734 8.76122621 0.083231676 0.044578757 6.53E-09 8.1850844 0.236497545 QVS(ph)FPDDDEEIVR ddPTM_K562_Paclitaxel_30min_R1 2 QVSFPDDDEEIVR 13 0 H7C2T4;C9JG63;Q7Z698-2;Q7Z698 H7C2T4 SPRED2 "Sprouty-related, EVH1 domain-containing protein 2" 1 QVS(1)FPDDDEEIVR;QVS(1)FPDDDEEIVR 171.26 4.56E-05 22593900 3041.9 2669 3278.6 2927.5 2692.3 2384 2471.4 3060.8 2369.7 3055.3 TRUE FALSE 3084.495985 2960.410446 2450.876881 2739.743253 3059.036841 2806.768927 2940.335248 2800.765935 2597.320273 2432.628183 1.267968532 1.216959693 1.007501639 1.126248258 1.257502837 1.15380104 1.20870722 1.151333342 1.0677013 1 11.24830011 -8.891613696 2.434807639 1.001581471 1.172838514 0.407054303 0.070315168 0.288116944 3.54945428 0.070939242 0.019601618 1.28E-09 8.891613696 0.171257043 QVSPAAS(ph)LRHPVSTSENAR ddPTM_K562_Paclitaxel_30min_R1 1 QVSPAASLRHPVSTSENAR 19 1 A0A2R8YH03;Q5VWN6 A0A2R8YH03 FAM208B Protein FAM208B 1 QVS(0.002)PAAS(0.998)LRHPVSTSENAR 74.147 0.0086369 17776000 541.9 625.18 510.42 552.92 509.28 595.33 521.61 805.46 716.42 608.72 TRUE FALSE 549.4882719 693.4392666 381.5581582 517.458186 578.6525582 700.9034167 620.5827745 737.0311455 785.235342 484.6625299 1.133754392 1.430767233 0.787265643 1.067666993 1.193928811 1.446167949 1.280443064 1.520709979 1.62016928 1 8.920836739 -7.113322248 3.768239264 1.399878479 1.10709136 0.2613533 0.212073046 0.318335819 8.067990086 0.072373316 0.073296651 7.70E-08 7.113322248 -0.292787119 QVSSTKPVPLNCPS(ph)PVPPLYLDDDGLPFPTDVIQHR ddPTM_K562_Paclitaxel_30min_R1 2 QVSSTKPVPLNCPSPVPPLYLDDDGLPFPTDVIQHR 36 1 Q9NYA4;J3QR65 Q9NYA4 MTMR4 Myotubularin-related protein 4 1 QVSS(0.001)T(0.001)KPVPLNCPS(0.945)PVPPLY(0.054)LDDDGLPFPTDVIQHR;QVSSTKPVPLNCPS(0.523)PVPPLY(0.475)LDDDGLPFPT(0.001)DVIQHR 72.214 1.48E-06 22448000 1448.79 1838.93 2562 1960.42 1474.43 1417.84 1543.65 2404.3 1821.84 2498.9 TRUE FALSE 1469.07753 2039.710596 1915.191414 1834.687436 1675.272328 1669.274017 1836.549529 2200.039708 1996.835872 1989.622808 0.738369868 1.025174514 0.962590198 0.922128269 0.842004988 0.838990189 0.923064171 1.105757181 1.003625342 1 10.95827924 -8.123386895 5.890499772 1.039878301 0.896079534 0.420330452 0.077572465 0.234663599 10.27435568 0.037467579 0.021425872 7.53E-09 8.123386895 -0.143798767 QVVQTPNT(ph)VLSTPFR ddPTM_K562_Paclitaxel_30min_R1 1 QVVQTPNTVLSTPFR 15 0 Q99459 Q99459 CDC5L Cell division cycle 5-like protein 1 QVVQT(0.316)PNT(0.62)VLS(0.063)T(0.001)PFR 95.195 0.020372 11520000 1513.2 1377.6 1401 1438.4 1273.3 1051.5 1272.3 1612.9 1241.6 1670 TRUE FALSE 1534.389469 1528.011027 1047.300223 1346.147462 1446.745017 1237.968761 1513.712283 1475.874078 1360.861228 1329.653083 1.153977295 1.149180223 0.787649227 1.012405024 1.088062018 0.931046434 1.138426483 1.109969282 1.023470892 1 10.37683417 -7.777979524 24.99777363 1.077130731 1.018375297 0.042279563 0.107198254 822.3178134 1242790.215 0.046597245 0.031512515 1.67E-08 7.777979524 -0.058755434 QVVSVVQDEEVGLPFEASPES(ph)PPPASPDGVTEIR ddPTM_K562_Paclitaxel_30min_R1 1 QVVSVVQDEEVGLPFEASPESPPPASPDGVTEIR 34 0 Q96TA1-2;Q96TA1 Q96TA1-2 FAM129B Niban-like protein 1 1 QVVSVVQDEEVGLPFEAS(0.13)PES(0.87)PPPASPDGVTEIR 104.39 4.68E-13 5800400 618.83 720.27 1241.6 763.25 713.89 610.11 702.9 984.65 573.21 1004.6 TRUE FALSE 627.4955293 798.9115144 928.1427241 714.2985612 811.1339043 718.3044421 836.2716056 900.9978365 628.2693817 799.8619686 0.784504769 0.998811727 1.160378616 0.893027284 1.014092351 0.898035499 1.0455199 1.126441651 0.785472252 1 9.643607247 -5.261100801 22.26452284 0.996963548 0.784504551 0.255277351 0.105570304 8.066483638 529277.5606 0.025162321 0.142599658 5.48E-06 5.261100801 -0.212458997 QWWREY(ph)LQIR ddPTM_K562_Paclitaxel_30min_R1 1 QWWREYLQIR 10 1 K7EPF5;K7EP44;Q8TAP6-3;Q8TAP6-2;Q8TAP6 K7EPF5 CEP76 Centrosomal protein of 76 kDa 1 QWWREY(1)LQIR 98.629 0.0098158 28483000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 QWYESHY(ph)ALPLGR ddPTM_K562_Paclitaxel_30min_R1 1 QWYESHYALPLGR 13 0 Q5JR95;P62241 Q5JR95 RPS8 40S ribosomal protein S8 1 QWYESHY(1)ALPLGR 152.38 0.0013376 4819400 1807.2 2065.7 3390.5 2997.9 2423.5 2157.1 1652 1811.5 1286.3 1772.3 TRUE FALSE 1832.506376 2291.240112 2534.526342 2805.628112 2753.62173 2539.631398 1965.458376 1657.601768 1409.854862 1411.104287 1.298632845 1.623721317 1.796129715 1.988250009 1.951394915 1.799747489 1.392851254 1.174684099 0.999114577 1 10.4626089 -8.081958386 2.059202827 1.033308829 1.760935934 0.734579912 0.185302083 0.190849557 1.568336168 0.127308313 0.062079438 8.28E-09 8.081958386 0.727627105 QYPDS(ph)PHPVPHR ddPTM_K562_Paclitaxel_30min_R1 2 QYPDSPHPVPHR 12 0 Q5VT52-2;Q5VT52-3;Q5VT52 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 QYPDS(1)PHPVPHR;QYPDS(1)PHPVPHR 116.86 0.0027101 16588700 4798.9 4184.7 5604.8 4819.7 4232.6 4898.8 4009.4 5576.9 2786.4 6322 TRUE FALSE 4866.099406 4641.599698 4189.798921 4510.586014 4809.151779 5767.533397 4770.16272 5103.107535 3054.04617 5033.57293 0.966728698 0.92212823 0.832370759 0.896100261 0.955415139 1.145813019 0.947669337 1.013814165 0.606735258 1 12.2973671 -12.37959553 2.412353316 1.587970078 0.928636343 0.028930755 0.130743904 14872487.27 3996598.624 49130337.07 0.033273044 4.17E-13 12.37959553 -0.659333735 QYT(ph)SPEEIDAQLQAEK ddPTM_K562_Paclitaxel_30min_R1 1 QYTSPEEIDAQLQAEK 16 0 Q13442;F8WBW6 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 1 QY(0.001)T(0.634)S(0.365)PEEIDAQLQAEK 138.66 2.38E-14 0 1040.6 584.82 1283.8 1016.4 1103.6 759.08 802.41 1061 651.46 1117.1 TRUE FALSE 1055.171611 648.6726253 959.6888122 951.2126532 1253.929004 893.69218 954.6631086 970.8614274 714.0356438 889.4344068 1.186339996 0.729309121 1.078987731 1.0694579 1.409804922 1.004787057 1.073337282 1.091549214 0.802797416 1 9.796744405 -8.743260755 24.82129502 0.901398701 1.076546822 0.160037345 0.16388259 370.517512 505913.1065 0.113468015 0.042697943 1.81E-09 8.743260755 0.17514812 QYTS(ph)PEEIDAQLQAEK ddPTM_K562_Paclitaxel_30min_R1 2 QYTSPEEIDAQLQAEK 16 0 Q13442;F8WBW6 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 1 QY(0.003)T(0.015)S(0.982)PEEIDAQLQAEK;QY(0.004)T(0.216)S(0.779)PEEIDAQLQAEK 169.92 4.65E-53 16253000 1739.4 1442.59 3099.9 2066.74 1378.77 1569.36 1449.53 1963.69 1343.04 1974.3 TRUE FALSE 1763.756967 1600.096855 2317.291906 1934.188547 1566.581817 1847.663961 1724.57075 1796.862278 1472.044993 1571.936576 1.122028072 1.017914386 1.474163742 1.230449482 0.996593527 1.175406177 1.097099448 1.14308828 0.936453172 1 10.61832729 -8.273418263 0.728259636 0.979372986 1.188321728 0.235056325 0.128391507 1.079525281 1.102110071 0.125127042 0.059636627 5.33E-09 8.273418263 0.208948742 RAAS(ph)AATAAPTATPAAQESGTIPK ddPTM_K562_Paclitaxel_30min_R1 1 RAASAATAAPTATPAAQESGTIPK 24 1 B8ZZ81;O00116 B8ZZ81 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" 1 RAAS(0.886)AAT(0.114)AAPTATPAAQESGTIPK 95.445 4.90E-06 0 541.65 468.78 1251.9 875.52 587.71 511.35 680.66 587.62 762.49 937.91 TRUE FALSE 549.2347711 519.9629857 935.8423617 819.3680659 667.766052 602.0307428 809.8116817 537.6980132 835.7305714 746.7634272 0.735486971 0.696288767 1.253197904 1.097225756 0.894213653 0.8061867 1.084428686 0.720037958 1.119136986 1 9.544507463 -5.70174176 24.9999947 0.98305058 0.71588531 0.357480434 0.149738753 85.09841259 35635.58476 0.038527506 0.101934151 1.99E-06 5.70174176 -0.267165269 RAAS(ph)ALLLR ddPTM_K562_Paclitaxel_30min_R1 1 RAASALLLR 9 1 F5H672;F5H5N2;B4DNC9;B3KQ30;Q9H1K1 F5H672 ISCU "Iron-sulfur cluster assembly enzyme ISCU, mitochondrial" 1 RAAS(1)ALLLR 73.082 0.026698 9639200 855.18 1078.1 1379.9 1270.3 804.9 980.03 1009.3 1147.4 1045.5 1240.4 TRUE FALSE 867.1551585 1195.810604 1031.527179 1188.828644 914.5410071 1153.82456 1200.809406 1049.921208 1145.924946 987.6057991 0.878037735 1.210817722 1.044472582 1.20374814 0.926018263 1.168304764 1.215879258 1.063097452 1.160306012 1 9.947791498 RAASVAAATT(ph)SPTPR ddPTM_K562_Paclitaxel_30min_R1 2 RAASVAAATTSPTPR 15 1 Q9Y2D9 Q9Y2D9 ZNF652 Zinc finger protein 652 1 RAASVAAAT(0.009)T(0.542)S(0.356)PT(0.093)PR;RAAS(0.002)VAAAT(0.051)T(0.728)S(0.219)PTPR 102.29 0.0027014 9514900 1443.9 1457.6 1621.66 1566.15 1473.74 1424.03 1343.38 1701.62 1665.09 1736.11 TRUE FALSE 1464.119055 1616.745697 1212.251877 1465.704149 1674.488339 1676.561726 1598.279342 1557.05676 1825.029334 1382.289829 1.059198313 1.169614117 0.876988205 1.060345029 1.211387296 1.212887262 1.156254867 1.126432914 1.320294265 1 10.43284443 -6.686336646 6.037791882 1.17865218 1.036717188 0.284266548 0.100679057 0.256246603 15.69777725 0.029218088 0.037647536 2.06E-07 6.686336646 -0.141934992 RAASVAAATTS(ph)PTPR ddPTM_K562_Paclitaxel_30min_R1 1 RAASVAAATTSPTPR 15 1 Q9Y2D9 Q9Y2D9 ZNF652 Zinc finger protein 652 1 RAASVAAATT(0.016)S(0.492)PT(0.492)PR 118.66 0.00053354 7432300 1431.8 1427.3 1802.2 1686 1156.1 1175.9 1147.8 1349.6 1360.8 1405.8 TRUE FALSE 1451.849617 1583.137441 1347.212321 1577.867506 1313.580393 1384.429355 1365.589058 1234.943056 1491.51092 1119.297188 1.29710825 1.414403125 1.20362343 1.409694872 1.173576068 1.236873789 1.220041533 1.103320073 1.332542363 1 10.12837743 -15 0.066135808 0.071131959 1.617741423 0.48703368 0.088722849 269.583426 1.288492292 38.99060419 5.423454654 1.00E-15 15 1.546609464 RAAVAASSSS(ph) ddPTM_K562_Paclitaxel_30min_R1 3 RAAVAASSSS 10 1 P61927 P61927 RPL37 60S ribosomal protein L37 1 RAAVAASS(0.01)S(0.11)S(0.881);RAAVAASSS(0.012)S(0.988);RAAVAASSS(0.009)S(0.991) 142 0.0015491 52039000 13518.1 12435.5 14825.8 13666.8 12701.8 12377.6 12096.6 15167.8 12877.5 15354.6 TRUE FALSE 13707.39511 13793.24994 11082.84343 12790.27262 14432.0002 14572.59357 14391.8667 13879.20072 14114.44141 12225.32409 1.121229589 1.128252293 0.906548026 1.046211333 1.180500418 1.192000593 1.177217601 1.135282845 1.154524928 1 13.57758509 -6.751178944 24.56452074 1.151154009 1.045823107 0.239400213 0.076287724 216.9300528 519349.3216 0.022867571 0.029180238 1.77E-07 6.751178944 -0.105330902 RADDFPVRDDPS(ph)DVT(ph)DEDEGPAEPPPPPKLPLPAFR ddPTM_K562_Paclitaxel_30min_R1 1 RADDFPVRDDPSDVTDEDEGPAEPPPPPKLPLPAFR 36 3 Q3YEC7;Q3YEC7-2 Q3YEC7 RABL6 Rab-like protein 6 2 RADDFPVRDDPS(1)DVT(1)DEDEGPAEPPPPPKLPLPAFR 47.827 0.002334 16127000 1271.6 1122.6 1969.7 1386.2 1460.8 1241.2 752.61 1439.6 1307.1 1766.5 TRUE FALSE 1289.406323 1245.169264 1472.424874 1297.295336 1659.785692 1461.309393 895.4138186 1317.296994 1432.652795 1406.48633 0.916757096 0.885304917 1.046881752 0.922366118 1.180093724 1.038978738 0.636631725 0.936587129 1.018604137 1 10.45787982 RADLNQGIGEPQS(ph)PSR ddPTM_K562_Paclitaxel_30min_R1 1 RADLNQGIGEPQSPSR 16 1 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 RADLNQGIGEPQS(0.991)PS(0.009)R 268.42 6.44E-95 32253000 1640.4 1583.4 1688.2 1496.2 1337.2 1240.5 1343.9 1608.8 1133.5 1499 TRUE FALSE 1663.370661 1756.280967 1261.993031 1400.240429 1519.349279 1460.485258 1598.898009 1472.122398 1242.37774 1193.502977 1.393687903 1.471534634 1.057385742 1.17321905 1.273016748 1.223696367 1.33966822 1.233446775 1.040950683 1 10.22098645 -2.000006131 0.028254661 3.44E-07 2.970694003 0.415600176 0.113348905 1786.909552 3.884022244 133.7176071 307.8555776 0.009999859 2.000006131 2.970693658 RADLNQGIGEPQS(ph)PSRR ddPTM_K562_Paclitaxel_30min_R1 3 RADLNQGIGEPQSPSRR 17 2 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 RADLNQGIGEPQS(0.865)PS(0.135)RR;RADLNQGIGEPQS(0.845)PS(0.155)RR;RADLNQGIGEPQS(0.824)PS(0.176)RR 116.04 0.0026464 766001000 3185.23 2884.33 3999.7 3210.9 3256.02 2923.39 2452.74 3525.13 2943.92 3483.81 TRUE FALSE 3229.833047 3199.250904 2989.926267 3004.967245 3699.545049 3441.81217 2918.134611 3225.648203 3226.69667 2773.80761 1.164404134 1.153378804 1.077914076 1.083336579 1.333742483 1.240825845 1.052032088 1.162895434 1.163273422 1 11.43765201 -11.47141322 5.36926076 0.999769454 1.158809821 0.271664727 0.078145562 0.000229914 2.26E-05 0.080663449 0.01953556 3.38E-12 11.47141322 0.159040366 RADLNQGIGEPQSPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 RADLNQGIGEPQSPSR 16 1 Q96C19 Q96C19 EFHD2 EF-hand domain-containing protein D2 1 RADLNQGIGEPQS(0.055)PS(0.945)R 185.28 5.63E-10 28506000 1183.3 891.58 1162.1 1056.6 644.98 949.98 1202.5 1056.2 816.73 873.41 TRUE FALSE 1199.869851 988.9257195 868.7134823 988.8344052 732.8371956 1118.445615 1430.668098 966.4692174 895.1805657 695.4085626 1.725417137 1.422078721 1.249213094 1.421947411 1.053822508 1.608328794 2.057305841 1.389786191 1.287272855 1 9.441717021 -9.013446908 2.557618363 1.005175247 1.486566427 0.264206219 0.256343285 0.426680311 6.598199639 0.264335067 0.071814908 9.70E-10 9.013446908 0.48139118 RAEDGSVIDYELIDQDAR ddPTM_K562_Paclitaxel_30min_R1 3 RAEDGSVIDYELIDQDAR 18 1 P07355-2;P07355;H0YN42;H0YMU9;H0YMD0;H0YN28;H0YM50;H0YNA0;H0YNP5;H0YL33 P07355-2 ANXA2 Annexin A2;Annexin 0 ;; 166.21 1.41E-09 167543800 4744.75 5114.84 6404.74 5164.72 4756.26 4879.67 4714.36 6070.12 4454.32 6149.54 FALSE TRUE 4811.191139 5673.295528 4787.784174 4833.477976 5404.143136 5745.010961 5608.885199 5554.425417 4882.177338 4896.260372 0.982625672 1.158699721 0.977845092 0.98717748 1.103728708 1.173346702 1.145544716 1.134421986 0.997123716 1 12.25746456 -6.798652887 18.00237434 1.105792405 1.032542786 0.146340158 0.073092953 15.58964016 7540.367991 0.022777137 0.025833871 1.59E-07 6.798652887 -0.073249619 RAELGS(ph)WSSQEHLEWEPACQTPQPSAR ddPTM_K562_Paclitaxel_30min_R1 1 RAELGSWSSQEHLEWEPACQTPQPSAR 27 1 H3BTL6;B7Z896;F5H3M2;Q9BVG8-5;Q9BVG8-2;Q9BVG8;Q9BVG8-6 H3BTL6 KIFC3 Kinesin-like protein;Kinesin-like protein KIFC3 1 RAELGS(0.654)WS(0.187)S(0.158)QEHLEWEPACQTPQPSAR 45.901 0.016991 12916000 502.1 445.55 329.37 447.21 366.47 352.47 289.05 478.75 304.92 450.54 TRUE FALSE 509.1309491 494.1966558 246.2164699 418.5279522 416.3894184 414.9756056 343.8957286 438.0771992 334.2089284 358.7197007 1.419300217 1.377668009 0.686375656 1.166726978 1.160765404 1.15682413 0.958675333 1.221224255 0.931671519 1 8.486713169 -5.563586573 24.99651259 1.052501416 1.408893384 0.482732232 0.149811604 104.7909953 64346.17978 0.036874268 0.097560395 2.73E-06 5.563586573 0.356391969 RAELPGSSS(ph)PLLAQPR ddPTM_K562_Paclitaxel_30min_R1 2 RAELPGSSSPLLAQPR 16 1 Q9C0H5;Q9C0H5-2 Q9C0H5 ARHGAP39 Rho GTPase-activating protein 39 1 RAELPGSS(0.006)S(0.994)PLLAQPR;RAELPGSS(0.006)S(0.994)PLLAQPR 193.71 2.45E-11 63580000 2408.9 2435.2 2908.5 2814.6 2080.41 2325.9 2045.4 2988.2 2132.99 2790 TRUE FALSE 2442.632032 2701.083371 2174.213203 2634.084154 2363.797064 2738.365708 2433.503972 2734.333758 2337.87322 2221.396469 1.099593011 1.215939347 0.978759638 1.185778492 1.064104088 1.232722635 1.095483857 1.230907583 1.052434022 1 11.11725119 -8.991649804 24.51214012 0.99999998 1.13643738 0.261901203 0.077511065 142.34087 417841.6946 0.069065716 0.017832691 1.02E-09 8.991649804 0.1364374 RAGAES(ph)PTMSVDGR ddPTM_K562_Paclitaxel_30min_R1 2 RAGAESPTMSVDGR 14 1 O75362 O75362 ZNF217 Zinc finger protein 217 1 RAGAES(0.912)PT(0.087)MS(0.001)VDGR;RAGAES(0.999)PT(0.001)MSVDGR 135.57 5.89E-05 20999600 1872.93 1952.36 2385.32 2245.71 1719.58 2012.18 1767.06 2053.69 1877.07 2986.81 TRUE FALSE 1899.156798 2165.525267 1783.116465 2101.680212 1953.815909 2369.011871 2102.35041 1879.216216 2057.37096 2378.096483 0.798603762 0.910612872 0.749808293 0.883765746 0.821588158 0.996179881 0.884047567 0.79021866 0.865133511 1 11.21559153 RAGDLLEDS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 RAGDLLEDSPK 11 1 P51858;P51858-2;P51858-3 P51858 HDGF Hepatoma-derived growth factor 1 RAGDLLEDS(1)PK 93.716 0.0097297 0 2039.1 1874.9 3775.8 3097.1 2219.7 1802.2 1689.8 2408 1668.7 3414 TRUE FALSE 2067.653691 2079.607923 2822.552591 2898.465868 2522.06072 2121.794866 2010.430729 2203.42537 1828.986091 2718.224926 0.760663208 0.765061016 1.038380807 1.066308325 0.927833711 0.78058105 0.739611615 0.810611862 0.672860466 1 11.40844912 -7.262579782 23.82323824 0.785076147 0.919138411 0.166589375 0.120967558 89.30421111 1865560.785 0.043634753 0.040665226 5.46E-08 7.262579782 0.134062264 RAGELTEDEVER ddPTM_K562_Paclitaxel_30min_R1 4 RAGELTEDEVER 12 1 P62269 P62269 RPS18 40S ribosomal protein S18 0 ;;; 162.31 0.00017562 104898000 7848.8 8231.01 8901.9 8329.2 7473.9 6968.35 7988.88 8207.3 8934.82 10602.4 FALSE TRUE 7958.707416 9129.699507 6654.505248 7795.002392 8491.971714 8204.089032 9504.728275 7510.038637 9793.049383 8441.62506 0.942793284 1.081509714 0.788296708 0.923400688 1.005964095 0.971861339 1.125935849 0.88964371 1.160090541 1 13.04330504 -7.079518039 2.11690422 1.031026158 0.936368439 0.176856794 0.09681738 0.607098198 5.395039719 0.035305943 0.036670838 8.33E-08 7.079518039 -0.094657719 RAGGGGGLGAGS(ph)PALSGGQGR ddPTM_K562_Paclitaxel_30min_R1 1 RAGGGGGLGAGSPALSGGQGR 21 1 A0A3B3ITT1;Q6IQ22 A0A3B3ITT1 RAB12 Ras-related protein Rab-12 1 RAGGGGGLGAGS(0.997)PALS(0.003)GGQGR 143.72 2.78E-16 3959200 1156.5 1027.6 1249 1288.7 1041.7 1033.8 993.98 1318.5 873.35 1343.5 TRUE FALSE 1172.694568 1139.796843 933.6745026 1206.04855 1183.597176 1217.129915 1182.582516 1206.485195 957.2391697 1069.693963 1.096289789 1.065535455 0.87284264 1.127470653 1.106482057 1.137830031 1.105533505 1.127878849 0.894871994 1 10.06298239 -3.875434125 2.70750758 1.056768803 47.42180392 0.016739126 0.092099916 19625.97599 137.8300229 0.023361979 5651452.871 0.000133219 3.875434125 46.36503512 RAGS(ph)SASSPPSASSSPHPSAAVPAADPADSASGSSNK ddPTM_K562_Paclitaxel_30min_R1 2 RAGSSASSPPSASSSPHPSAAVPAADPADSASGSSNK 37 1 G4U4J3;Q8NDF8-4;Q8NDF8-2;Q8NDF8;Q8NDF8-3;Q8NDF8-5 G4U4J3 PAPD5 Non-canonical poly(A) RNA polymerase PAPD5 1 RAGS(0.277)S(0.095)AS(0.095)S(0.095)PPS(0.095)AS(0.095)S(0.109)S(0.109)PHPS(0.027)AAVPAADPADSASGSSNK;RAGS(0.258)S(0.084)AS(0.205)S(0.205)PPS(0.05)AS(0.05)S(0.02)S(0.064)PHPS(0.064)AAVPAADPADSASGSSNK 68.493 2.91E-06 31175000 2960.9 2671.5 5309.9 3679.8 2615.2 2452.3 2224.25 3548.3 3125 4677.4 TRUE FALSE 3002.361735 2963.183404 3969.350073 3443.794098 2971.434516 2887.180973 2646.289826 3246.849767 3425.170213 3724.143313 0.80618856 0.795668468 1.065842461 0.924721153 0.797884041 0.775260437 0.710576797 0.87183803 0.919720302 1 11.86269288 -2.003924895 24.38831597 0.859580255 0.000517081 0 0.105036133 0 0 0.02536832 0 0.009910033 2.003924895 -0.859063174 RAHT(ph)PTPGIYMGR ddPTM_K562_Paclitaxel_30min_R1 1 RAHTPTPGIYMGR 13 1 Q13595;Q13595-4;Q13595-3;Q13595-2 Q13595 TRA2A Transformer-2 protein homolog alpha 1 RAHT(0.999)PT(0.001)PGIYMGR 98.676 0.010653 26950000 559.04 480.75 779.87 824.82 589.35 613.07 559.11 568.81 475.36 740.05 TRUE FALSE 566.8682848 533.2399108 582.9821732 771.919737 669.6294478 721.7893566 665.1982038 520.4860401 521.020452 589.2274038 0.962053498 0.904981519 0.989400984 1.310054033 1.136453334 1.224975878 1.128932903 0.883336445 0.884243415 1 9.202680719 -8.261791538 24.99655798 0.912842439 1.097554702 0.303870407 0.118455479 42.1267781 2989902.562 0.06771289 0.035731774 5.47E-09 8.261791538 0.184712263 RAHT(ph)PTPGIYMGRPTHS(ph)GGGGGGGGGGGGGGGGR ddPTM_K562_Paclitaxel_30min_R1 1 RAHTPTPGIYMGRPTHSGGGGGGGGGGGGGGGGR 34 2 Q13595;Q13595-4;Q13595-3 Q13595 TRA2A Transformer-2 protein homolog alpha 2 RAHT(0.747)PT(0.203)PGIY(0.079)MGRPT(0.241)HS(0.73)GGGGGGGGGGGGGGGGR 46.929 0.0043169 10542000 404.51 366.27 543.8 454.55 510.47 315.25 227 529.11 429.98 507.96 TRUE FALSE 410.174388 406.2605972 406.5109644 425.3971975 580.0046563 371.1551612 270.072065 484.1588029 471.2815002 404.4374732 1.014184924 1.004507802 1.005126852 1.051824387 1.434102166 0.917707151 0.66777211 1.197116576 1.165276542 1 8.659772866 -6.297692485 6.843917929 1.063420472 1.007563283 0.017373581 0.186442905 1.384600252 206.8896417 0.056850501 0.086077697 5.04E-07 6.297692485 -0.055857189 RALLETAS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 RALLETASPR 10 1 Q96BT3;H3BUW2;H3BTR4;Q96BT3-2;H3BMP6;H3BQS6;H3BN05;H3BTS2;H3BQJ0;I3L4F8;Q96BT3-3 Q96BT3 CENPT Centromere protein T 1 RALLETAS(1)PR;RALLETAS(1)PR 108.32 0.0034491 44615000 3049.3 3179.8 4253.5 3361.5 3488.2 3807.1 3644.6 4244.3 2623 4721.7 TRUE FALSE 3091.999608 3526.981317 3179.651318 3145.908436 3963.351896 4482.235731 4336.143824 3883.720223 2874.95087 3759.414948 0.822468296 0.938172925 0.845783549 0.836807982 1.054246991 1.192269487 1.15340921 1.033065058 0.764733585 1 11.87629245 -6.765793068 24.94136847 1.048595863 0.865261041 0.360955689 0.110985027 120.0783665 687903.2125 0.036264676 0.042550765 1.71E-07 6.765793068 -0.183334823 RALVEFESNPEETREPGS(ph)PPSVQR ddPTM_K562_Paclitaxel_30min_R1 1 RALVEFESNPEETREPGSPPSVQR 24 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 RALVEFESNPEET(0.15)REPGS(0.63)PPS(0.221)VQR 71.001 0.0085157 52271000 561.75 451.12 771.62 384.57 506.22 530.27 655.46 807.39 536.99 705.34 TRUE FALSE 569.6162331 500.3748072 576.8149877 359.9054015 575.1757344 624.3059391 779.8301133 738.7971799 588.5702888 561.5913208 1.014289595 0.890994552 1.027108088 0.640867101 1.024189144 1.111673055 1.388607844 1.315542375 1.048040215 1 9.133376829 -7.235715755 2.957430997 1.213579644 0.899410849 0.426829548 0.148831975 0.230672484 4.070606731 0.053830814 0.050933145 5.81E-08 7.235715755 -0.314168795 RALVEFESNPEETREPGSPPS(ph)VQR ddPTM_K562_Paclitaxel_30min_R1 1 RALVEFESNPEETREPGSPPSVQR 24 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 RALVEFESNPEET(0.018)REPGS(0.261)PPS(0.721)VQR 66.732 0.020085 380010000 930.76 788.95 1198.7 905.65 715.41 656.75 713.89 908.12 968.48 1122.5 TRUE FALSE 943.7935116 875.0902291 896.0733597 847.5656625 812.860954 773.2153913 849.3469007 830.9695377 1061.506831 893.7338838 1.056011782 0.979139591 1.002617643 0.948342317 0.909511174 0.865151703 0.950335347 0.929772892 1.187721368 1 9.803701512 -8.742215679 24.99330866 1.093860739 0.952591484 0.42521838 0.064473503 194.0265899 252261.6646 0.044369255 0.016712598 1.81E-09 8.742215679 -0.141269255 RANAT(ph)LLLGPLRAS(ph)DSGLYRCQVVR ddPTM_K562_Paclitaxel_30min_R1 1 RANATLLLGPLRASDSGLYRCQVVR 25 3 O14594 O14594 NCAN Neurocan core protein 2 RANAT(1)LLLGPLRAS(0.5)DS(0.5)GLY(0.001)RCQVVR 67.251 0.00090228 8948300 2245.1 1907.4 3026.4 2035.3 1453.7 1521.4 1681.4 2413.1 1865.2 2547.4 TRUE FALSE 2276.538327 2115.656382 2262.34789 1904.764968 1651.718551 1791.198928 2000.436873 2208.092093 2044.360794 2028.238482 1.122421425 1.043100405 1.115424991 0.939122783 0.814361115 0.883130334 0.986292732 1.088674785 1.007948923 1 10.98601158 -6.26420296 24.81890795 0.955460455 1.08859409 0.41429356 0.072647747 249.1784681 2237807.883 0.023355574 0.036456751 5.44E-07 6.26420296 0.133133635 RAPFDLFENK ddPTM_K562_Paclitaxel_30min_R1 2 RAPFDLFENK 10 1 P08238;Q58FF7 P08238 HSP90AB1;HSP90AB3P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3 0 ; 136.5 0.001377 22799000 7113.9 6241.7 11288.4 7692.3 5560.8 5519.6 6139.8 8239.8 6749 11241.8 FALSE TRUE 7213.516548 6923.189914 8438.503807 7198.950307 6318.275105 6498.423561 7304.794998 7539.777559 7397.271605 8950.714989 0.80591512 0.773478982 0.942774272 0.804287737 0.705896134 0.726022845 0.816113015 0.842365953 0.826444772 1 13.12778722 -9.50772382 1.055872365 1.000020927 0.797602347 0.490395743 0.060701167 1.822702211 2.88831835 0.064718855 0.020224553 3.11E-10 9.50772382 -0.20241858 RAPFDLFENR ddPTM_K562_Paclitaxel_30min_R1 2 RAPFDLFENR 10 1 P07900;P07900-2 P07900 HSP90AA1 Heat shock protein HSP 90-alpha 0 ; 166.69 0.00023411 186602000 5031.5 4772.1 5777.7 5129.9 4106.3 4075.3 4957.7 6351.7 5190.8 7501.7 FALSE TRUE 5101.956524 5293.134016 4319.048177 4800.891175 4665.64758 4797.997235 5898.397694 5812.083439 5689.399533 5972.849422 0.854191386 0.886199139 0.723113521 0.803785737 0.781142676 0.803301221 0.987534973 0.973083871 0.952543607 1 12.54420364 -7.759796521 24.99525039 0.976047625 0.806792805 0.797800783 0.041833336 20.102347 305854.2652 0.017547392 0.012865584 1.74E-08 7.759796521 -0.16925482 RAPS(ph)PDGFSPYSPEETNR ddPTM_K562_Paclitaxel_30min_R1 3 RAPSPDGFSPYSPEETNR 18 1 Q13233 Q13233 MAP3K1 Mitogen-activated protein kinase kinase kinase 1 1 RAPS(1)PDGFSPYSPEETNR;RAPS(1)PDGFSPYSPEETNR;RAPS(1)PDGFSPYSPEETNR 130.07 1.42E-07 70996000 3198.05 2771.93 3740.6 2913.63 2399.49 2934.12 2534.42 2887.69 2797.96 2881.68 TRUE FALSE 3242.832567 3074.578691 2796.239267 2726.762813 2726.341162 3454.444985 3015.312964 2642.36271 3066.71656 2294.392034 1.413373355 1.340040693 1.218727761 1.188446775 1.188263 1.505603634 1.314210004 1.151661386 1.33661402 1 11.16389621 -13.45170718 0.360471107 1.43E-08 1.300286593 0.413272718 0.105594889 151.7326117 3.53760293 114.4817327 0.082972693 3.53E-14 13.45170718 1.300286578 RAPS(ph)PDGFSPYSPEETNRR ddPTM_K562_Paclitaxel_30min_R1 1 RAPSPDGFSPYSPEETNRR 19 2 Q13233 Q13233 MAP3K1 Mitogen-activated protein kinase kinase kinase 1 1 RAPS(1)PDGFSPYSPEETNRR 87.647 0.016461 20313000 624.17 613.63 670.51 682.69 599.04 464.72 407.22 556.47 508.21 565.99 TRUE FALSE 632.9103057 680.6281986 501.2314577 638.905319 680.6393898 547.131567 484.4878692 509.1944001 557.0258412 450.6409273 1.404466988 1.510355934 1.112263506 1.417770292 1.510380768 1.214118678 1.075108451 1.129933766 1.236074683 1 8.815834535 -7.476480378 5.651983808 1.123383485 1.383076267 0.561389839 0.117416511 0.168105031 13.11953465 0.043355853 0.037197892 3.34E-08 7.476480378 0.259692783 RAPS(ph)TSPSFEGTQETYTVAHEENVR ddPTM_K562_Paclitaxel_30min_R1 3 RAPSTSPSFEGTQETYTVAHEENVR 25 1 Q9BUT9 Q9BUT9 FAM195A Protein FAM195A 1 RAPS(0.387)T(0.387)S(0.112)PS(0.112)FEGT(0.001)QETYTVAHEENVR;RAPS(0.265)T(0.265)S(0.265)PS(0.165)FEGT(0.039)QET(0.002)YTVAHEENVR;RAPS(0.236)T(0.236)S(0.236)PS(0.177)FEGT(0.098)QET(0.011)Y(0.004)T(0.001)VAHEENVR 145.33 2.41E-20 104319000 965.27 977.17 927.174 973.42 958.39 930.02 826.45 1034.58 948.83 1169.71 TRUE FALSE 978.7867581 1083.860725 693.0974566 910.9891981 1088.938944 1094.945989 983.2645731 946.6859714 1039.969361 931.3224599 1.050964408 1.163786735 0.744207819 0.978167324 1.169239432 1.175689448 1.055772426 1.016496447 1.116658736 1 9.863136961 -6.732345641 24.00565941 1.092476381 0.979955098 0.174795904 0.111126125 245.5934448 202640.7999 0.034363694 0.044353797 1.85E-07 6.732345641 -0.112521282 RAPSPDGFSPY(ph)SPEETNR ddPTM_K562_Paclitaxel_30min_R1 1 RAPSPDGFSPYSPEETNR 18 1 Q13233 Q13233 MAP3K1 Mitogen-activated protein kinase kinase kinase 1 1 RAPS(0.027)PDGFS(0.239)PY(0.563)S(0.168)PEET(0.002)NR 86.803 0.0039937 15403000 1799.6 1530.9 2264.7 1918.6 1836 1338.2 1872.6 1994 1593 1766.6 TRUE FALSE 1824.799952 1698.048839 1692.948476 1795.549583 2086.094284 1575.510981 2227.916074 1824.597254 1746.014768 1406.56595 1.29734404 1.207230161 1.203604051 1.27654845 1.483111605 1.120111702 1.583940002 1.297199931 1.241331604 1 10.45796148 -9.178191769 2.893482423 1.000190186 1.30859916 0.342511568 0.128215709 0.934378086 12.92057156 0.121879553 0.032599196 6.63E-10 9.178191769 0.308408974 RAPSTSPS(ph)FEGTQETYTVAHEENVR ddPTM_K562_Paclitaxel_30min_R1 1 RAPSTSPSFEGTQETYTVAHEENVR 25 1 Q9BUT9 Q9BUT9 FAM195A Protein FAM195A 1 RAPS(0.015)T(0.015)S(0.052)PS(0.788)FEGT(0.114)QET(0.012)Y(0.003)T(0.001)VAHEENVR 77.657 0.00015263 59379000 469.5 453.41 694.49 450.01 489.89 557.9 417.18 676.95 565.67 619.89 TRUE FALSE 476.0744485 502.9148371 519.1574102 421.1483728 556.6213119 656.8357317 496.3377272 619.4388721 620.005131 493.5560777 0.964580257 1.018961897 1.051871172 0.853293864 1.127777242 1.330822902 1.005635934 1.255052668 1.256199972 1 8.947070202 -6.953803378 9.589165726 1.18121982 0.982000221 0.42088299 0.109656747 0.346818298 68.66534534 0.032746614 0.037115167 1.11E-07 6.953803378 -0.199219599 RAQS(ph)TDSLGTSGSLQSK ddPTM_K562_Paclitaxel_30min_R1 2 RAQSTDSLGTSGSLQSK 17 1 I3L456;Q15276-2;Q15276 I3L456 RABEP1 Rab GTPase-binding effector protein 1 1 RAQS(0.617)T(0.324)DS(0.057)LGT(0.001)SGSLQSK;RAQS(0.901)T(0.099)DSLGTSGSLQSK 101.16 0.001267 22288000 5175.1 4961.6 8457.8 6101.5 5287.7 4567.8 4209.5 5231.3 5909.9 6150.2 TRUE FALSE 5247.567367 5503.324267 6322.523785 5710.177099 6007.974261 5377.835195 5008.23065 4786.868412 6477.572301 4896.785864 1.07163505 1.123864596 1.291157907 1.166107169 1.226921991 1.098237772 1.022758762 0.977553143 1.32282123 1 12.25761939 -7.414482725 6.012100638 1.076495366 1.178474988 0.162365534 0.104328706 0.425604049 20.20632302 0.037004606 0.03241757 3.85E-08 7.414482725 0.101979622 RAQST(ph)DSLGTSGSLQSK ddPTM_K562_Paclitaxel_30min_R1 1 RAQSTDSLGTSGSLQSK 17 1 I3L456;Q15276-2;Q15276 I3L456 RABEP1 Rab GTPase-binding effector protein 1 1 RAQS(0.348)T(0.524)DS(0.121)LGT(0.006)SGSLQSK 250.47 1.22E-63 27185000 3788.7 3740 7188.9 4611.4 3726.2 2760.2 3031 4087.9 4542.4 4502.4 TRUE FALSE 3841.753489 4148.345848 5373.973284 4315.645444 4233.771525 3249.682715 3606.116427 3740.607379 4978.717816 3584.808409 1.071676098 1.15720155 1.499096373 1.203870598 1.181031465 0.906515034 1.005943977 1.043460892 1.388837909 1 11.8076803 -7.023627277 12.37248973 1.065054671 1.239828529 0.201186 0.15549219 2.319064797 1212.453519 0.052686503 0.053844443 9.47E-08 7.023627277 0.174773857 RAQT(ph)PPISSLPTS(ph)PSDEVGR ddPTM_K562_Paclitaxel_30min_R1 1 RAQTPPISSLPTSPSDEVGR 20 1 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 2 RAQT(1)PPISSLPT(0.418)S(0.491)PS(0.091)DEVGR 89.979 0.0013718 9896400 844.97 963.98 1362.9 1329.6 1113.9 1029.8 993.7 1009.8 917.44 1381.5 TRUE FALSE 856.802187 1069.230596 1018.819039 1244.325407 1265.632038 1212.420571 1182.249388 924.011187 1005.564211 1099.949542 0.77894681 0.972072405 0.926241614 1.131256808 1.150627361 1.102251081 1.074821474 0.840048704 0.914191218 1 10.10322163 -5.106641933 1.414600233 1.02810108 0.609696699 0.363418591 0.095344452 2.190689271 3.029453819 0.030977773 1.43708641 7.82E-06 5.106641933 -0.418404381 RAS(ph)AGPAPGPVVTAEGLHPSLPSPTGNSTPLGSSK ddPTM_K562_Paclitaxel_30min_R1 1 RASAGPAPGPVVTAEGLHPSLPSPTGNSTPLGSSK 35 1 Q4KMP7;Q4KMP7-2 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 RAS(0.999)AGPAPGPVVT(0.001)AEGLHPSLPSPTGNSTPLGSSK 69.144 6.73E-06 30917000 2022.9 2024.8 3337.9 2542.6 2337.1 2455.4 2227 3280.8 2293.7 4352 TRUE FALSE 2051.226841 2245.874511 2495.205862 2379.529016 2655.452587 2890.830714 2649.561624 3002.075562 2514.020134 3465.060011 0.591974406 0.648148807 0.72010466 0.686720867 0.76635111 0.834280129 0.764651006 0.866384868 0.72553437 1 11.75866462 -4.458570164 0.086320869 1.188678906 6.09E-15 0.787653071 0.051187007 43.30208215 0.472155461 1.433847568 6.618357721 3.48E-05 4.458570164 -1.188678906 RAS(ph)DGGANIQLHAQQLLK ddPTM_K562_Paclitaxel_30min_R1 1 RASDGGANIQLHAQQLLK 18 1 H0Y4E8;Q9Y2K2-7;Q9Y2K2;Q9Y2K2-8;H7C3X8 H0Y4E8 SIK3 Serine/threonine-protein kinase SIK3 1 RAS(1)DGGANIQLHAQQLLK 72.916 0.011591 9248000 1534.8 1103.9 2475.5 1816.7 1480.5 1253.7 1445.3 2302.5 1989.8 2941.4 TRUE FALSE 1556.291935 1224.427535 1850.529408 1700.184993 1682.169165 1476.026092 1719.53813 2106.888253 2180.929181 2341.941065 0.664530785 0.522825938 0.790169076 0.725972578 0.718279888 0.630257573 0.734236295 0.899633336 0.931248533 1 11.19348906 -8.307831888 2.047198741 0.967181845 0.676515267 0.764497307 0.067429549 0.175849782 1.370572897 0.052587941 0.020635539 4.92E-09 8.307831888 -0.290666578 RAS(ph)DTSLTQGIVAFR ddPTM_K562_Paclitaxel_30min_R1 2 RASDTSLTQGIVAFR 15 1 Q9H0K1 Q9H0K1 SIK2 Serine/threonine-protein kinase SIK2 1 RAS(0.96)DT(0.033)S(0.007)LTQGIVAFR;RAS(0.999)DT(0.001)SLTQGIVAFR 105.9 0.0015969 20609000 853.56 985.43 1154.73 996.53 939.96 1047.99 1015.01 1108.26 968.06 1731.61 TRUE FALSE 865.5124735 1093.02258 863.20413 932.6170261 1067.998466 1233.836312 1207.602849 1014.106395 1061.046488 1378.706931 0.627771177 0.792788195 0.626096896 0.676443271 0.774637772 0.894922832 0.875895247 0.735548921 0.769595383 1 10.4291001 -6.938454354 3.84614593 0.839965882 0.685526884 0.506166421 0.08030679 0.213218214 6.428405181 0.026051169 0.029381185 1.15E-07 6.938454354 -0.154438998 RAS(ph)GLSTEGATGPSADTSGSELDGR ddPTM_K562_Paclitaxel_30min_R1 3 RASGLSTEGATGPSADTSGSELDGR 25 1 Q7Z628 Q7Z628 NET1 Neuroepithelial cell-transforming gene 1 protein 1 RAS(0.877)GLS(0.119)T(0.004)EGATGPSADTSGSELDGR;RAS(0.961)GLS(0.029)T(0.009)EGATGPSADTSGSELDGR;RAS(0.556)GLS(0.221)T(0.221)EGAT(0.001)GPSADTSGSELDGR 133.29 3.29E-14 155104000 911.36 897.6 1033.29 811.41 750.46 619.62 798.93 1104.11 641.23 1150.69 TRUE FALSE 924.1218518 995.6030035 772.4231599 759.3697943 852.6853574 729.5009071 950.5227968 1010.308964 702.8230066 916.1787464 1.008669821 1.086690788 0.843092206 0.828844587 0.930697597 0.796242993 1.03748619 1.102742197 0.76712433 1 9.839485285 -10.75845845 16.27558034 1.000002966 0.936193196 0.028319967 0.115884981 0 0 0.114758553 0.027833037 1.74E-11 10.75845845 -0.06380977 RAS(ph)GQAFELILS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 RASGQAFELILSPR 14 1 A2A2D0;P16949;P16949-2 A2A2D0 STMN1 Stathmin 2 RAS(1)GQAFELILS(1)PR 98.957 0.01842 86028000 4846.2 4637.1 5308.1 4076.6 2982.3 3074.4 2748 4040 3871.7 3960.4 TRUE FALSE 4914.061752 5143.39426 3968.004505 3815.145122 3388.539751 3619.601673 3269.418654 3696.776783 4243.594084 3153.268306 1.558402671 1.631131182 1.25837833 1.209901839 1.074611933 1.147888896 1.036834908 1.172363537 1.345776405 1 11.62263222 -5.880400302 2.950300158 1.143736084 1.603108615 0.780620288 0.094371287 0.111068896 1.916270998 0.025922055 0.066002397 1.32E-06 5.880400302 0.459372531 RAS(ph)ISEPSDTDPEPR ddPTM_K562_Paclitaxel_30min_R1 2 RASISEPSDTDPEPR 15 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 RAS(1)ISEPSDTDPEPR;RAS(0.998)IS(0.002)EPSDTDPEPR 237.34 9.76E-46 203553000 2027.73 1722.99 2031.7 1576.05 1472.02 1442.14 1522.93 2292.59 1763.8 2430.37 TRUE FALSE 2056.124476 1911.111875 1518.772207 1474.969207 1672.534046 1697.88328 1811.898017 2097.82017 1933.220871 1935.05926 1.062564087 0.987624469 0.784871161 0.762234645 0.864332209 0.877432188 0.936352728 1.084111589 0.999049957 1 10.91816203 -8.047813714 4.267156182 1.03036602 0.883566499 0.34082576 0.085265492 0.266260292 10.27916159 0.04583778 0.026555418 8.96E-09 8.047813714 -0.146799521 RAS(ph)LSDLTDLEDIEGLTVR ddPTM_K562_Paclitaxel_30min_R1 4 RASLSDLTDLEDIEGLTVR 19 1 J3KSI3;Q8WZ73-2;Q8WZ73;J3KSU7;K7EN88;Q8WZ73-3 J3KSI3 RFFL;hCG_2039718 E3 ubiquitin-protein ligase rififylin 1 RAS(0.996)LS(0.004)DLTDLEDIEGLTVR;RAS(0.999)LS(0.001)DLTDLEDIEGLTVR;RAS(0.999)LS(0.001)DLTDLEDIEGLTVR;RAS(0.799)LS(0.201)DLTDLEDIEGLTVR 215.43 2.16E-29 164461000 6882.6 6163.8 8005.1 7531.5 6767.2 5989.7 6554.1 7925.6 7230.2 8238.2 TRUE FALSE 6978.977635 6836.784529 5984.113499 7048.4633 7689.00721 7051.889195 7797.70626 7252.27081 7924.693015 6559.250318 1.063990136 1.04231188 0.912316684 1.074583673 1.172238722 1.075105973 1.188810593 1.105655442 1.208170543 1 12.67931522 -6.518989751 21.43470503 1.130288191 1.007088997 0.383120882 0.067333071 23.57093306 129916.0404 0.018655862 0.024782985 3.03E-07 6.518989751 -0.123199195 RAS(ph)LSEIGFGK ddPTM_K562_Paclitaxel_30min_R1 2 RASLSEIGFGK 11 1 Q00537-2;Q00537;F5H6Z0 Q00537-2 CDK17 Cyclin-dependent kinase 17 1 RAS(0.99)LS(0.01)EIGFGK;RAS(0.965)LS(0.035)EIGFGK 82.483 0.018986 25627000 6525.1 6195.5 12621.3 8832.4 7582.7 7362.2 5985.2 9289.8 7140.3 11987.7 TRUE FALSE 6616.471532 6871.945642 9434.896717 8265.929396 8615.592116 8667.7828 7120.860455 8500.573505 7826.157719 9544.60016 0.693216208 0.719982558 0.98850623 0.866032024 0.902666636 0.908134721 0.746061683 0.890615988 0.819956581 1 13.22046905 -2.000015027 0.030491162 1.438463576 9.32E-07 0.265564892 0.0868957 2246.151919 5.26179835 78.58139411 193.1715572 0.009999654 2.000015027 -1.438462645 RAS(ph)MQPIQIAEGTGITTR ddPTM_K562_Paclitaxel_30min_R1 2 RASMQPIQIAEGTGITTR 18 1 A0A087WY61;Q14980-5;Q14980-2;Q14980;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 RAS(1)MQPIQIAEGTGITTR;RAS(1)MQPIQIAEGTGITTR 96.777 0.00077238 85516000 2707.6 2427 2865 2602.9 2043 1923.3 2895.2 3406.3 3747.2 3773.3 TRUE FALSE 2745.514754 2691.988068 2141.695316 2435.961644 2321.291188 2264.370251 3444.549086 3116.913554 4107.135303 3004.299389 0.913861902 0.896045207 0.712876794 0.810825197 0.772656413 0.75370992 1.146539888 1.037484335 1.36708589 1 11.55281287 -7.766536088 24.98580328 1.140901306 0.807833166 0.693459126 0.106749892 70.35405689 344894.8042 0.042813305 0.029858292 1.71E-08 7.766536088 -0.333068141 RAS(ph)PPDPS(ph)PSPSAASASER ddPTM_K562_Paclitaxel_30min_R1 1 RASPPDPSPSPSAASASER 19 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 2 RAS(1)PPDPS(0.984)PS(0.012)PS(0.003)AASASER 173.36 2.11E-68 0 1234.5 1355.1 1495.2 1119.4 1316.3 1321.4 1106 1360.1 1043.2 1804.6 TRUE FALSE 1251.786809 1503.054401 1117.718268 1047.606694 1495.602345 1555.731737 1315.857726 1244.551016 1143.404021 1436.821529 0.871219413 1.046096798 0.7779103 0.729114001 1.040910311 1.082759205 0.915811532 0.86618344 0.795787088 1 10.48866516 -4.960030527 17.01322587 0.914521244 0.663972669 0.013104278 0.117631354 41451271.29 455750223.3 0.031132476 327844434.8 1.10E-05 4.960030527 -0.250548574 RAS(ph)PPDPSPSPSAASASER ddPTM_K562_Paclitaxel_30min_R1 1 RASPPDPSPSPSAASASER 19 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 RAS(0.858)PPDPS(0.141)PS(0.002)PSAASASER 66.711 0.0148 27010000 1846.1 2050.3 2307.6 2164.2 1852.2 1803.6 1785.9 2318.4 2139.8 2226.8 TRUE FALSE 1871.951096 2274.158688 1725.01784 2025.397899 2104.500998 2123.443136 2124.765202 2121.437449 2345.337351 1772.976938 1.055823714 1.282678099 0.97294996 1.14237126 1.186987238 1.197671042 1.198416718 1.196539788 1.322824511 1 10.79195805 -6.684011075 4.237157812 1.195279844 1.112829171 0.099166745 0.103136042 0.471510226 16.05968478 0.02993863 0.03858836 2.07E-07 6.684011075 -0.082450672 RAS(ph)QEANLLTLAQK ddPTM_K562_Paclitaxel_30min_R1 2 RASQEANLLTLAQK 14 1 A0A0A0MSU2;A0A1C7CYX1;Q6PJG2;H7C1L3 A0A0A0MSU2 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 RAS(1)QEANLLTLAQK;RAS(1)QEANLLTLAQK 161.35 7.02E-05 57511000 13838.4 12641.9 25054 16240 12181.1 11083.5 11027 16134.9 14176.2 20376 TRUE FALSE 14032.1803 14022.18539 18728.80784 15198.43909 13840.37205 13049.0031 13119.31569 14764.13953 15537.88735 16223.36002 0.864936751 0.86432067 1.154434582 0.936824374 0.853113784 0.804334188 0.808668221 0.910054361 0.957747799 1 13.98578503 -5.600232194 24.58924525 0.920241856 0.864404849 0.059943829 0.096635077 98.76735117 31389.81553 0.027001303 0.071438308 2.51E-06 5.600232194 -0.055837008 RAS(ph)SASVPAVGASAEGTRR ddPTM_K562_Paclitaxel_30min_R1 1 RASSASVPAVGASAEGTRR 19 2 A0A2R8YFI4;V9GYZ0;Q9BZ23-3;Q9BZ23-4;Q9BZ23 A0A2R8YFI4 PANK2 "Pantothenate kinase 2, mitochondrial" 1 RAS(0.961)S(0.024)AS(0.015)VPAVGASAEGTRR 111.35 0.0021705 36342000 684.45 520.67 767.48 617.2 627.2 585.32 545.41 664.07 617.98 800.46 TRUE FALSE 694.0344117 577.5185114 573.7201819 577.6155545 712.6352586 689.1182837 648.8987003 607.6531085 677.3397402 637.3258126 1.088978977 0.906158985 0.900199193 0.906311251 1.118164751 1.081265296 1.018158511 0.95344186 1.0627841 1 9.315887283 -6.744221215 24.97307127 1.03771548 0.943664525 0.298837973 0.066114724 307.9766826 446684.9477 0.020279047 0.026115126 1.80E-07 6.744221215 -0.094050955 RAS(ph)SLNVLNVGGK ddPTM_K562_Paclitaxel_30min_R1 1 RASSLNVLNVGGK 13 1 H0YJK1;H0YG16;Q07866-7;Q07866-6;Q07866-4;G3V5R9;Q07866-9 H0YJK1 KLC1 1 RAS(0.64)S(0.36)LNVLNVGGK 114.27 0.002127 87651000 7928 6740.5 12327 8600.5 6556.1 5960.1 5805.1 7797 7879.5 9427 TRUE FALSE 8039.01646 7476.450585 9214.896392 8048.902424 7449.151816 7017.040051 6906.58742 7134.596183 8636.361182 7505.772225 1.071044553 0.996093455 1.227707971 1.072361668 0.992456418 0.934885824 0.920170132 0.950547921 1.150629265 1 12.87378479 -6.730069581 4.448546632 0.981885691 1.096836404 0.273352005 0.079954213 0.262468237 11.77170895 0.025127424 0.031604868 1.86E-07 6.730069581 0.114950713 RAS(ph)VCAEAYNPDEEEDDAESR ddPTM_K562_Paclitaxel_30min_R1 5 RASVCAEAYNPDEEEDDAESR 21 1 P31323 P31323 PRKAR2B cAMP-dependent protein kinase type II-beta regulatory subunit 1 RAS(1)VCAEAYNPDEEEDDAESR;RAS(1)VCAEAYNPDEEEDDAESR;RAS(1)VCAEAYNPDEEEDDAESR;RAS(1)VCAEAYNPDEEEDDAESR;RAS(1)VCAEAYNPDEEEDDAESR 160.23 5.49E-18 1093727400 5286.06 4471.94 4578.39 4131.06 4028.69 3864.45 3546.44 4964.97 5629.93 5852.26 TRUE FALSE 5360.081149 4960.201532 3422.51882 3866.112302 4577.465784 4549.755948 4219.358476 4543.164808 6170.709932 4659.5662 1.150339092 1.064520026 0.734514475 0.829715071 0.982380245 0.976433374 0.905526029 0.975018835 1.324309961 1 12.18597993 -8.608194293 9.002753144 1.16096309 0.942809822 0.292951794 0.130674518 0.360927867 34.37603263 0.090956094 0.034153638 2.46E-09 8.608194293 -0.218153267 RAS(ph)VRGS(ph)SEEDEDART(ph)PDR ddPTM_K562_Paclitaxel_30min_R1 1 RASVRGSSEEDEDARTPDR 19 3 Q8NC56;H7C2Z0 Q8NC56 LEMD2 LEM domain-containing protein 2 3 RAS(0.913)VRGS(0.879)S(0.254)EEDEDART(0.954)PDR 59.673 0.01914 13489000 2957.4 2279.4 3513.1 3077.5 2532.8 2209.9 2495.5 3035.3 2367.6 3725 TRUE FALSE 2998.812724 2528.2726 2626.174456 2880.122924 2877.810241 2601.794736 2969.008098 2777.432319 2595.018559 2965.842955 1.011116492 0.85246341 0.885473201 0.971097583 0.97031781 0.877253036 1.001067198 0.936473158 0.874968297 1 11.53422649 -6.259779124 24.9149621 0.944943435 0.909962274 0.056014832 0.055854514 405.1740126 6080257.4 0.015065124 0.024368154 5.50E-07 6.259779124 -0.03498116 RAS(ph)WASENGETDAEGTQMTPAK ddPTM_K562_Paclitaxel_30min_R1 2 RASWASENGETDAEGTQMTPAK 22 1 Q12789-3;Q12789 Q12789-3 GTF3C1 General transcription factor 3C polypeptide 1 1 RAS(0.906)WAS(0.094)ENGETDAEGTQMTPAK;RAS(0.685)WAS(0.312)ENGET(0.003)DAEGTQMTPAK 139.47 1.23E-16 48796000 8197.2 7886.2 14948.9 10516.2 7806 7278.9 5869.8 9117 5127.2 10721.3 TRUE FALSE 8311.986091 8747.241985 11174.86531 9841.738001 8869.309357 8569.710714 6983.563908 8342.453943 5619.690469 8536.293175 0.973723128 1.024711992 1.309100459 1.152928771 1.039011802 1.00391476 0.818102631 0.977292341 0.658329131 1 13.05939401 -7.436121245 1.825512764 0.858909381 1.11765885 0.452484525 0.12201792 0.322023624 2.136257466 0.054940426 0.044288986 3.66E-08 7.436121245 0.25874947 RASGLS(ph)TEGATGPSADTSGSELDGR ddPTM_K562_Paclitaxel_30min_R1 1 RASGLSTEGATGPSADTSGSELDGR 25 1 Q7Z628 Q7Z628 NET1 Neuroepithelial cell-transforming gene 1 protein 1 RAS(0.352)GLS(0.504)T(0.144)EGATGPSADTSGSELDGR 118.01 2.03E-08 78120000 209.8 308.78 209.54 238.87 319.88 211.37 190.73 288.24 347.65 170.32 TRUE FALSE 212.7378473 342.4936446 156.6390354 223.5499473 363.4530716 248.8535017 226.9200218 263.7522129 381.0433358 135.6086905 1.56876264 2.525602477 1.1550811 1.648492781 2.680160617 1.835085206 1.673344245 1.944950666 2.809874016 1 7.083305827 -11.52068424 8.468810398 0.99991537 1.970199363 0.25350776 0.505336696 0.000796397 4.51E-05 0.482463319 0.117004652 3.02E-12 11.52068424 0.970283993 RASGQAFELILS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 RASGQAFELILSPR 14 1 A2A2D0;P16949;P16949-2 A2A2D0 STMN1 Stathmin 1 RASGQAFELILS(1)PR;RASGQAFELILS(1)PR;RASGQAFELILS(1)PR;RASGQAFELILS(1)PR 142.35 4.94E-06 316329000 6341.08 5592.41 6719.8 5611.55 4522.91 4202.7 4940.6 5685.55 5501.96 7165.7 TRUE FALSE 6429.874684 6203.008236 5023.303381 5251.650299 5139.006915 4947.989836 5878.053058 5202.527039 6030.447841 5705.326407 1.126995061 1.087231088 0.880458544 0.920482007 0.900738459 0.867257977 1.030274631 0.911871937 1.056985598 1 12.47809371 -5.659863817 5.86676473 0.940830508 1.115844118 0.528265781 0.061052313 0.144202145 6.948277352 0.015446967 0.042068992 2.19E-06 5.659863817 0.17501361 RASQGLLSSIENS(ph)ESDSSEAKEEGSR ddPTM_K562_Paclitaxel_30min_R1 1 RASQGLLSSIENSESDSSEAKEEGSR 26 2 Q5UIP0-2;Q5UIP0 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 RASQGLLSSIENS(0.398)ES(0.398)DS(0.091)S(0.091)EAKEEGS(0.021)R 67.413 0.00076359 21562000 695.75 454.16 1112.8 713.03 631.14 379.28 366.81 773.92 780.66 904.7 TRUE FALSE 705.4926466 503.7467247 831.8598771 667.2994472 717.1119533 446.5399826 436.4102826 708.1706653 855.6458811 720.3216434 0.979413368 0.699335817 1.15484504 0.926390944 0.995544088 0.619917486 0.605854741 0.983131177 1.187866405 1 9.492497443 -8.519824268 24.74106727 1.091121833 0.85460442 0.245734206 0.170136533 168.4020497 1364121.906 0.116249687 0.045809397 3.02E-09 8.519824268 -0.236517412 RASS(ph)ADDIEAMR ddPTM_K562_Paclitaxel_30min_R1 2 RASSADDIEAMR 12 1 Q12809-7;Q12809-4;Q12809;Q86U57;Q12809-5 Q12809-7 KCNH2 Potassium voltage-gated channel subfamily H member 2 1 RAS(0.018)S(0.982)ADDIEAMR;RAS(0.247)S(0.753)ADDIEAMR 95.981 0.015438 14022000 2287.93 2548.09 2985.2 2528.6 2111.67 2252.09 2386.47 2627.7 2086.06 2449.9 TRUE FALSE 2319.968079 2826.299083 2231.54934 2366.426914 2399.315205 2651.466541 2839.290224 2404.460483 2286.435384 1950.609035 1.189355753 1.448931607 1.144026968 1.213173358 1.230033883 1.359301886 1.45559165 1.232671663 1.172164869 1 10.92970893 -9.022186171 2.171255585 1.002581248 1.290302622 0.437993672 0.100302007 0.316128996 3.440244077 0.098830817 0.027359576 9.50E-10 9.022186171 0.287721374 RASS(ph)LNFLNK ddPTM_K562_Paclitaxel_30min_R1 1 RASSLNFLNK 10 1 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 RAS(0.003)S(0.997)LNFLNK 102.33 0.0050851 22852000 3248.5 2573 4610 3671 2407.9 2280.3 2224.6 3029 2811.9 3327 TRUE FALSE 3293.989022 2853.928841 3446.148484 3435.558491 2735.896746 2684.679188 2646.706237 2771.667544 3081.995559 2648.955574 1.243504819 1.0773789 1.300946123 1.296948324 1.032820925 1.013485924 0.999150859 1.046324661 1.163475745 1 11.37120793 -6.774287091 24.9998582 1.041236751 1.223904249 0.615577165 0.072391749 163.0134194 317200.2586 0.023381957 0.02667989 1.68E-07 6.774287091 0.182667498 RASS(ph)LNVLNVGGK ddPTM_K562_Paclitaxel_30min_R1 1 RASSLNVLNVGGK 13 1 H0YJK1;H0YG16;Q07866-7;Q07866-6;Q07866-4;G3V5R9;Q07866-9 H0YJK1 KLC1 1 RAS(0.194)S(0.806)LNVLNVGGK 154.88 0.0004288 77683000 9267.7 7943.7 14197 10173 7577.5 7020.5 7076.2 8293.9 8113.9 9058 TRUE FALSE 9397.476393 8811.02003 10612.79176 9520.549313 8609.683788 8265.487102 8418.87201 7589.281426 8893.276349 7211.974628 1.303037917 1.221720886 1.471551456 1.320102996 1.193803949 1.146078228 1.167346316 1.052316712 1.233126405 1 12.81617861 -6.902868762 2.681791567 1.126998465 1.333079653 0.590601428 0.082185164 0.201284289 2.93622627 0.027370532 0.031634308 1.25E-07 6.902868762 0.206081188 RAT(ph)PEPGDEGEPGR ddPTM_K562_Paclitaxel_30min_R1 2 RATPEPGDEGEPGR 14 1 M0QZR4;M0QZH8;M0QYS3;M0QYC1 M0QZR4 ARHGEF1 1 RAT(1)PEPGDEGEPGR;RAT(1)PEPGDEGEPGR 119.62 0.0014986 33637000 2741 2579.6 3709.4 3343.2 2633.8 2600.9 2659.5 3552 2605.35 3893.6 TRUE FALSE 2779.382457 2861.249452 2772.916093 3128.782116 2992.568151 3062.133097 3164.126241 3250.235429 2855.605509 3100.082183 0.896551218 0.922959226 0.894465349 1.009257797 0.965318974 0.987758684 1.020658826 1.048435247 0.921138647 1 11.59809075 -6.260559999 24.99995657 0.994994845 0.906488657 0.606970952 0.032627214 52.01704242 1478773.889 0.008923344 0.014377849 5.49E-07 6.260559999 -0.088506189 RAT(ph)SPSSSVSGDFDDGHHSVSTPGPSR ddPTM_K562_Paclitaxel_30min_R1 4 RATSPSSSVSGDFDDGHHSVSTPGPSR 27 1 C9JCJ2;C9J053;C9JQF1;C9JPI5;E7EVG2;Q86U86-6;Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-3;Q86U86-9;Q86U86-2;Q86U86-8;Q86U86;C9J409 C9JCJ2 PBRM1 Protein polybromo-1 1 RAT(0.318)S(0.318)PS(0.123)S(0.075)S(0.075)VS(0.089)GDFDDGHHS(0.002)VSTPGPSR;RAT(0.383)S(0.265)PS(0.108)S(0.108)S(0.108)VS(0.026)GDFDDGHHSVSTPGPSR;RAT(0.41)S(0.41)PS(0.08)S(0.08)S(0.017)VS(0.004)GDFDDGHHSVSTPGPSR;RAT(0.286)S(0.286)PS(0.286)S(0.071)S(0.071)VS(0.002)GDFDDGHHSVSTPGPSR 94.595 1.94E-06 115544000 1937.8 2117.61 2788.51 2924.72 2158.31 2073.27 1809.52 2394.6 2000.25 2330.44 TRUE FALSE 1964.935179 2348.817821 2084.516163 2737.14155 2452.308362 2440.935324 2152.866974 2191.163783 2192.38295 1855.495049 1.058981634 1.265871242 1.123428577 1.475154327 1.321646406 1.315517024 1.160265545 1.180905217 1.181562274 1 10.85758844 -9.131432075 0.868352784 1.003483934 1.258600859 0.308032935 0.11020911 0.956548531 1.565583102 0.110147592 0.038554189 7.39E-10 9.131432075 0.255116925 RATGDGSS(ph)PELPSLER ddPTM_K562_Paclitaxel_30min_R1 1 RATGDGSSPELPSLER 16 1 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BS99 H3BSS6 ZNF106 Zinc finger protein 106 1 RAT(0.001)GDGS(0.12)S(0.879)PELPSLER 65.374 0.029365 6990800 962.04 761.93 1047.5 756.36 858.64 890.34 462.17 732.76 641.59 634.41 TRUE FALSE 975.5115281 845.1200941 783.0456697 707.8504549 975.6013049 1048.229298 549.8643448 670.5074643 703.2175862 505.1168938 1.931258962 1.673117856 1.550226649 1.401359693 1.931436697 2.075221223 1.088588308 1.327430289 1.392187818 1 8.980473484 -7.775553238 24.99938054 1.229337382 1.738363854 0.622751111 0.212068838 188.03109 333049.6955 0.094670131 0.064175038 1.68E-08 7.775553238 0.509026472 RAYFNGQS(ph)FIAS(ph)IQK ddPTM_K562_Paclitaxel_30min_R1 1 RAYFNGQSFIASIQK 15 1 A0A494C139;A0A0A0MTC7;A0A0A0MQS9;Q16363-2;Q16363 A0A494C139 LAMA4 Laminin subunit alpha-4 2 RAY(0.076)FNGQS(0.924)FIAS(1)IQK 68.551 0.025897 0 538.69 724.16 1432.7 891.61 667.21 888.53 510.36 402.26 737.33 595.47 TRUE FALSE 546.233322 803.2262378 1070.997166 834.4261253 758.095298 1046.09832 607.1981457 368.0855022 808.153841 474.1128871 1.152116588 1.694166642 2.258949703 1.759973517 1.598976359 2.206433 1.280703736 0.776366794 1.704559954 1 8.889086798 -7.926428446 8.23757113 1.150372147 1.78612811 0.389512083 0.362801007 0.259573512 25.69829744 0.15095181 0.101576914 1.18E-08 7.926428446 0.635755963 RCKNLS(ph)SLNLCLNWIINDR ddPTM_K562_Paclitaxel_30min_R1 1 RCKNLSSLNLCLNWIINDR 19 2 A0A6E1XD66;H7C835;Q9UF56-3;Q9UF56-2;Q9UF56 A0A6E1XD66 FBXL17 F-box/LRR-repeat protein 17 1 RCKNLS(0.5)S(0.5)LNLCLNWIINDR 56.746 0.02279 24807000 1134.8 1097.1 953.14 1014.6 1090 1131.5 1110.2 1198.1 1003.8 1319.5 TRUE FALSE 1150.690701 1216.885088 712.5080187 949.5280972 1238.476454 1332.155638 1320.854654 1096.313927 1100.219475 1050.585176 1.095285492 1.158292651 0.678201097 0.903808772 1.178844403 1.268012979 1.257256132 1.043526933 1.047244432 1 10.03697742 -6.76468264 24.99677311 1.147672551 0.95308983 0.251657403 0.145093638 118.0790737 910070.4168 0.047838843 0.056515677 1.72E-07 6.76468264 -0.194582721 RDAS(ph)EETSTSVMQK ddPTM_K562_Paclitaxel_30min_R1 2 RDASEETSTSVMQK 14 1 M0QZH1;M0QX70;M0QYR7;M0R2N0;M0QZC7;Q9H0W8-2;Q9H0W8 M0QZH1 SMG9 Protein SMG9 1 RDAS(0.932)EET(0.03)S(0.029)T(0.009)SVMQK;RDAS(1)EETSTSVMQK 166.36 4.13E-05 42629000 8709.7 7714.7 15765.7 9936.6 7422.2 7311.1 6723.9 9649.6 8464.4 11842.1 TRUE FALSE 8831.662672 8557.017035 11785.45405 9299.310951 8433.229299 8607.620932 7999.724924 8829.806249 9277.44344 9428.67352 0.936681353 0.907552586 1.249958865 0.986279876 0.894423726 0.912919608 0.848446487 0.936484462 0.98396062 1 13.2028391 -6.527947153 21.39198073 0.923057048 1.035530673 0.191903945 0.094036247 35.24572634 148753.9269 0.02857852 0.037113667 2.97E-07 6.527947153 0.112473625 RDDDNELMT(ph)SGPR ddPTM_K562_Paclitaxel_30min_R1 1 RDDDNELMTSGPR 13 1 H7C2X9;Q14571 H7C2X9 ITPR2 "Inositol 1,4,5-trisphosphate receptor type 2" 1 RDDDNELMT(0.5)S(0.5)GPR 78.324 0.030026 0 123.98 0 55.097 126.85 0 0 0 114.37 0 0 TRUE FALSE 125.7161025 0 41.18708092 118.7144088 0 0 0 104.6535546 0 0 0 RDDDYRGGGDRYEDR ddPTM_K562_Paclitaxel_30min_R1 1 RDDDYRGGGDRYEDR 15 3 E7EX17;P23588-2;P23588;F8VX11;F8VP89 E7EX17;F8VP89 EIF4B Eukaryotic translation initiation factor 4B 0 45.213 0.03085 7242000 242.98 254.21 326.91 293.47 200.96 263.22 291.1 367.27 365.15 350.56 FALSE TRUE 246.3824697 281.9655075 244.3775273 274.6481477 228.3341543 309.8983712 346.3347054 336.0681211 400.224289 279.1156796 0.882725292 1.010210204 0.875542097 0.983993977 0.8180628 1.110286501 1.240828555 1.204046013 1.433901132 1 8.124719361 -7.493331331 3.835358492 1.233614106 0.921813268 0.629600908 0.110802135 0.138946847 4.413927783 0.040110437 0.033020764 3.21E-08 7.493331331 -0.311800838 RDGEAQEAASETQPLS(ph)SPPTAASSK ddPTM_K562_Paclitaxel_30min_R1 1 RDGEAQEAASETQPLSSPPTAASSK 25 1 B5MEB3;A0A087WWW8;Q9Y6J0-2;Q9Y6J0 B5MEB3 CABIN1 Calcineurin-binding protein cabin-1 1 RDGEAQEAASETQPLS(0.943)S(0.057)PPTAASSK 164.3 4.21E-26 14863000 1280 1245.5 2292.2 1471.5 1047.7 915.82 879.69 1421.6 1251.8 1759.8 TRUE FALSE 1297.923949 1381.487902 1713.50576 1377.124576 1190.414478 1078.227818 1046.606585 1300.826207 1372.040983 1401.151794 0.926326437 0.985965909 1.222926572 0.98285181 0.849597083 0.769529628 0.7469616 0.928397774 0.979223657 1 10.45239754 -6.625912765 4.625104546 0.86401457 1.048274474 0.337774018 0.104196773 0.230836008 8.433099021 0.033066668 0.043188879 2.37E-07 6.625912765 0.184259905 RDGEAQEAASETQPLSS(ph)PPTAASSK ddPTM_K562_Paclitaxel_30min_R1 1 RDGEAQEAASETQPLSSPPTAASSK 25 1 B5MEB3;A0A087WWW8;Q9Y6J0-2;Q9Y6J0 B5MEB3 CABIN1 Calcineurin-binding protein cabin-1 1 RDGEAQEAASETQPLS(0.259)S(0.74)PPT(0.001)AASSK 81.803 0.0001044 23486000 3055.3 2807.5 5550.9 3800.4 2714.7 2826 2464 3451.9 2974.7 4745.2 TRUE FALSE 3098.083626 3114.032344 4149.506642 3556.659354 3084.4881 3327.151421 2931.531137 3158.639549 3260.433226 3778.125635 0.820005454 0.824226785 1.098297686 0.94138197 0.816406969 0.880635464 0.775922089 0.836033487 0.862976391 1 11.88345496 -6.752420949 24.99413275 0.850425711 0.92673288 0.083002592 0.090501462 415.1244127 1150491.413 0.027585169 0.035092675 1.77E-07 6.752420949 0.076307169 RDGPGLERS(ph)PGEPGGAAPER ddPTM_K562_Paclitaxel_30min_R1 1 RDGPGLERSPGEPGGAAPER 20 2 Q96EB6;Q96EB6-2 Q96EB6 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 RDGPGLERS(1)PGEPGGAAPER 105.95 0.0015675 6178200 1261.3 1229.4 1500.2 1159.9 996.5 1031.3 1150.5 1195.9 1033.7 1264.7 TRUE FALSE 1278.962091 1363.63005 1121.455956 1085.509206 1132.240171 1214.186575 1368.801369 1094.30083 1132.991504 1006.953446 1.270130309 1.354213599 1.113711821 1.078013298 1.124421566 1.205802095 1.359349208 1.086744213 1.125167711 1 9.97578127 -15 0.095630843 0.403321085 1.328512354 0.311862847 0.095528185 287.5128425 1.88506865 34.69952831 2.06910266 1.00E-15 15 0.925191269 RDPEDS(ph)DVFEEDTHL ddPTM_K562_Paclitaxel_30min_R1 2 RDPEDSDVFEEDTHL 15 1 Q9NZ53-2;Q9NZ53 Q9NZ53-2 PODXL2 Podocalyxin-like protein 2 1 RDPEDS(1)DVFEEDTHL;RDPEDS(1)DVFEEDTHL 124.04 0.00017154 38832000 3269.5 2734.7 3887.2 4314.1 2989.8 2793.5 2835.3 3757.5 3330 4506 TRUE FALSE 3315.283087 3033.283794 2905.828284 4037.412935 3397.061378 3288.888002 3373.283374 3438.276921 3649.861379 3587.674727 0.924075715 0.845473468 0.80994753 1.125356461 0.946869947 0.916718558 0.940242255 0.958358041 1.017333414 1 11.80883338 -6.220833435 24.99994059 0.978201157 0.85839635 0.47212243 0.060898024 487.3184446 300027.8251 0.016838064 0.02916394 6.01E-07 6.220833435 -0.119804807 RDPQHCS(ph)PT(ph)LSEAPLLRAHTQTR ddPTM_K562_Paclitaxel_30min_R1 1 RDPQHCSPTLSEAPLLRAHTQTR 23 2 E7EWF8 E7EWF8 LY6E 2 RDPQHCS(0.992)PT(0.986)LS(0.022)EAPLLRAHTQTR 50.956 0.030198 120310000 1771 1497.9 1639.2 1971.4 1935.5 1730.6 1970.9 2082.4 1102.1 1950.4 TRUE FALSE 1795.799464 1661.445788 1225.363687 1844.963228 2199.147868 2037.497611 2344.867986 1905.487122 1207.961629 1552.907409 1.156411163 1.069893657 0.789077107 1.188070336 1.416148738 1.312053506 1.509985703 1.227044903 0.777870993 1 10.6007561 -6.502247193 24.39152539 1.24466431 1.00776553 0.141674578 0.21358623 948.5764479 1121448.471 0.062374904 0.09124801 3.15E-07 6.502247193 -0.23689878 RDPSSNDINGGMEPTPSTVSTPS(ph)PSADLLGLR ddPTM_K562_Paclitaxel_30min_R1 3 RDPSSNDINGGMEPTPSTVSTPSPSADLLGLR 32 1 O95782-2;O95782 O95782-2 AP2A1 AP-2 complex subunit alpha-1 1 RDPSSNDINGGMEPTPSTVST(0.001)PS(0.705)PS(0.293)ADLLGLR;RDPSSNDINGGMEPTPSTVS(0.007)T(0.045)PS(0.667)PS(0.281)ADLLGLR;RDPSSNDINGGMEPT(0.001)PS(0.005)T(0.013)VS(0.017)T(0.126)PS(0.464)PS(0.374)ADLLGLR 125.17 7.77E-21 244423000 991.11 936.63 1371.21 1278.24 950.41 974.6 1100.95 1145.44 1044.74 1287.92 TRUE FALSE 1004.988598 1038.894431 1025.031077 1196.259408 1079.871933 1147.431626 1309.849515 1048.127722 1145.091945 1025.441197 0.98005483 1.013119459 0.999600055 1.166580211 1.053080309 1.118963846 1.277352147 1.022123673 1.116682213 1 10.00202905 -6.242880065 23.38331158 1.113994462 0.999144199 0.313861702 0.074288861 417.8545429 526461.9925 0.019898699 0.034362011 5.72E-07 6.242880065 -0.114850262 RDQMEGS(ph)PNSSESFEHIAR ddPTM_K562_Paclitaxel_30min_R1 3 RDQMEGSPNSSESFEHIAR 19 1 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 RDQMEGS(0.999)PNSSESFEHIAR;RDQMEGS(0.993)PNS(0.007)SESFEHIAR;RDQMEGS(1)PNSSESFEHIAR 119.18 4.86E-05 90242000 2222.24 1895.19 2516.9 2542.72 2238.15 1891.55 1759.3 2091.24 2464.75 2380.49 TRUE FALSE 2253.358216 2102.113253 1881.477466 2379.64132 2543.023922 2226.989834 2093.117991 1913.576109 2701.50025 1895.344831 1.188890897 1.109092772 0.992683461 1.255518933 1.341720979 1.174978715 1.104346796 1.009618977 1.425334433 1 10.88824463 -6.277935314 24.57954042 1.190217576 1.098109395 0.087602562 0.133558465 1642.753142 2447759.006 0.03782096 0.056278316 5.27E-07 6.277935314 -0.092108182 RDS(ph)FDDRGPSLNPVLDYDHGSR ddPTM_K562_Paclitaxel_30min_R1 2 RDSFDDRGPSLNPVLDYDHGSR 22 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 RDS(0.51)FDDRGPS(0.49)LNPVLDYDHGSR;RDS(0.781)FDDRGPS(0.219)LNPVLDYDHGSR 53.625 0.01378 16398700 1668.03 1590.32 2345.2 1907.68 1487.65 1529.7 1496.75 1904.05 1824.72 2315.3 TRUE FALSE 1691.387566 1763.956516 1753.125255 1785.329943 1690.293116 1800.970817 1780.750499 1742.289068 1999.992509 1843.440589 0.917516722 0.956882758 0.95100719 0.968477072 0.916923022 0.976961681 0.965992888 0.94512895 1.084923767 1 10.84818521 -8.746743864 24.99990752 1.04246188 0.951097169 0.656771604 0.026764838 113.2348331 192636.3083 0.017008388 0.006370147 1.79E-09 8.746743864 -0.091364711 RDS(ph)GVGSGLEAQESWER ddPTM_K562_Paclitaxel_30min_R1 1 RDSGVGSGLEAQESWER 17 1 A0A0A0MTG6;Q12770-4;Q12770-2;Q12770 A0A0A0MTG6 SCAP Sterol regulatory element-binding protein cleavage-activating protein 1 RDS(0.997)GVGS(0.003)GLEAQESWER 120.99 0.00025381 14244000 840.94 953.2 1652 1253.4 1311.2 934.9 991.76 1291.2 1101.8 1669 TRUE FALSE 852.7157545 1057.2736 1234.932168 1173.012534 1489.807639 1100.691388 1179.941283 1181.504501 1207.632813 1328.856884 0.64169119 0.795626386 0.929319164 0.882722999 1.121119706 0.828299422 0.887937066 0.889113429 0.908775676 1 10.37597002 -5.425146385 1.974927157 0.928455823 0.605014246 0.588068782 0.076432964 0.380185395 2.06353448 0.0209031 0.197729487 3.76E-06 5.425146385 -0.323441577 RDS(ph)PLQGSGQQNSQAGQR ddPTM_K562_Paclitaxel_30min_R1 2 RDSPLQGSGQQNSQAGQR 18 1 C9J840;A0A0D9SG62;G5E948;A0A0D9SEY1;O95819-2;O95819-6;O95819-3;E7EX83;H7C0P6;E7ENQ1;G3XAA2;H7C360;E7EN19;O95819-4;O95819;O95819-5 C9J840 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 RDS(1)PLQGSGQQNSQAGQR;RDS(1)PLQGSGQQNSQAGQR 111.6 0.00031019 11091500 2145.5 2177.5 2805.9 2244.5 2166.02 2346.7 2025.49 2761.3 2174.9 2705.7 TRUE FALSE 2175.543619 2415.246814 2097.515842 2100.547816 2461.068595 2762.854296 2409.816154 2526.71033 2383.808863 2154.276855 1.009871881 1.1211404 0.973651941 0.975059362 1.142410545 1.282497321 1.118619526 1.172880971 1.106547126 1 11.07298795 -6.814199379 8.684206398 1.152492417 1.023965216 0.350229313 0.076472636 0.29832877 45.10442367 0.023472339 0.026719397 1.53E-07 6.814199379 -0.128527201 RDS(ph)SDDWEIPDGQITVGQR ddPTM_K562_Paclitaxel_30min_R1 3 RDSSDDWEIPDGQITVGQR 19 1 A0A2R8Y679;A0A2R8Y492;A0A2R8YDP5;H7C560;A0A2U3TZI2;A0A2R8Y8E0;P15056 A0A2R8Y679 BRAF Serine/threonine-protein kinase B-raf 1 RDS(0.5)S(0.5)DDWEIPDGQITVGQR;RDS(0.789)S(0.211)DDWEIPDGQITVGQR;RDS(0.5)S(0.5)DDWEIPDGQITVGQR 229.48 9.42E-46 298009000 4361.7 4884.63 6070.52 5644.35 4659.02 4093.66 4069.99 5598.91 4765.49 5585.18 TRUE FALSE 4422.777257 5417.950422 4537.942147 5282.346654 5293.657402 4819.613123 4842.249356 5123.247648 5223.236607 4446.91725 0.994571522 1.218360972 1.020469213 1.18786709 1.190410593 1.083809941 1.088900261 1.15208972 1.174574725 1 12.11858984 -5.230608989 23.69209812 1.12728107 0.994571065 0.231512261 0.070551954 8987.001648 6905978.913 0.016520626 1.899239272 5.88E-06 5.230608989 -0.132710005 RDS(ph)SESQLASTESDKPTTGR ddPTM_K562_Paclitaxel_30min_R1 3 RDSSESQLASTESDKPTTGR 20 2 A0A087WVF1;Q96B23-2;Q96B23;K7EQH1 A0A087WVF1 C18orf25 Uncharacterized protein C18orf25 1 RDS(0.444)S(0.409)ES(0.147)QLASTESDKPTTGR;RDS(0.834)S(0.155)ES(0.011)QLASTESDKPTTGR;RDS(0.86)S(0.134)ES(0.006)QLASTESDKPTTGR 106.31 0.0021657 129035000 2786.64 2477.62 5285.7 3321.41 2196.54 1916.91 1757.38 3154.05 2583.64 3842.44 TRUE FALSE 2825.661558 2748.13493 3951.259662 3108.389629 2495.745936 2256.847074 2090.833681 2886.093766 2831.810166 3059.348619 0.923615419 0.898274526 1.291536256 1.016029886 0.815776901 0.737688755 0.683424461 0.943368712 0.925625196 1 11.5790088 -6.723929817 6.205823676 0.833970608 1.043222554 0.302637049 0.133264813 0.222039588 22.83921852 0.042037119 0.053450777 1.89E-07 6.723929817 0.209251946 RDSFDDRGPS(ph)LNPVLDYDHGSR ddPTM_K562_Paclitaxel_30min_R1 8 RDSFDDRGPSLNPVLDYDHGSR 22 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 1 RDS(0.116)FDDRGPS(0.884)LNPVLDYDHGSR;RDS(0.262)FDDRGPS(0.738)LNPVLDYDHGSR;RDS(0.175)FDDRGPS(0.825)LNPVLDYDHGSR;RDS(0.049)FDDRGPS(0.951)LNPVLDYDHGSR;RDS(0.027)FDDRGPS(0.973)LNPVLDYDHGSR;RDS(0.24)FDDRGPS(0.76)LNPVLDYDHGSR;RDS(0.037)FDDRGPS(0.963)LNPVLDYDHGSR;RDS(0.064)FDDRGPS(0.936)LNPVLDYDHGSR 104.68 7.18E-05 534462000 16929.9 14863.62 22051 18305.34 15863.91 14829.06 15710.55 19459.23 15997.14 21180.86 TRUE FALSE 17166.97083 16486.4803 16483.95233 17131.31742 18024.84312 17458.78558 18691.54485 17806.04695 17533.73677 16864.18911 1.017954123 0.977602907 0.977453006 1.015839974 1.068823589 1.035257935 1.108357166 1.055849578 1.039702334 1 14.04167533 -6.575474902 4.046390698 1.055994108 0.990210946 0.481842375 0.028053449 0.165868738 5.668296859 0.008267353 0.011131969 2.66E-07 6.575474902 -0.065783162 RDSFDDRGPSLNPVLDYDHGSR ddPTM_K562_Paclitaxel_30min_R1 2 RDSFDDRGPSLNPVLDYDHGSR 22 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 0 ; 73.722 0.00093992 45316000 1421.36 1608.88 2104.76 1885.77 1472.23 1738.55 1606.11 1809.27 2014.84 2101.52 FALSE TRUE 1441.263425 1784.542959 1573.387307 1764.825153 1672.772651 2046.857432 1910.860988 1655.56122 2208.374385 1673.22907 0.861366474 1.066526389 0.940329889 1.054742105 0.999727222 1.223297795 1.142019955 0.989440866 1.319827885 1 10.70841925 -7.158152283 7.545030798 1.134482627 0.989517694 0.338200858 0.10511646 0.334918521 21.6759813 0.032876938 0.032905028 6.95E-08 7.158152283 -0.144964933 RDSS(ph)DDWEIPDGQITVGQR ddPTM_K562_Paclitaxel_30min_R1 1 RDSSDDWEIPDGQITVGQR 19 1 A0A2R8Y679;A0A2R8Y492;A0A2R8YDP5;H7C560;A0A2U3TZI2;A0A2R8Y8E0;P15056 A0A2R8Y679 BRAF Serine/threonine-protein kinase B-raf 1 RDS(0.231)S(0.769)DDWEIPDGQITVGQR 157.49 5.21E-12 173330000 2213.6 2054.7 2911.6 2416.2 1963.2 2016.5 2085.6 2284.2 2205.8 2559.5 TRUE FALSE 2244.59723 2279.039095 2176.53057 2261.235747 2230.621077 2374.097962 2481.331712 2090.142952 2417.676946 2037.872495 1.101441447 1.11834234 1.068040604 1.109606098 1.094583239 1.164988471 1.217608912 1.025649523 1.18637302 1 10.99284807 RDTERIWSPWSPWSK ddPTM_K562_Paclitaxel_30min_R1 1 RDTERIWSPWSPWSK 15 2 O75339 O75339 CILP Cartilage intermediate layer protein 1;Cartilage intermediate layer protein 1 C1;Cartilage intermediate layer protein 1 C2 0 42.317 0.029445 3057200 616.62 514.47 1018.5 730.91 676.13 517.58 719.34 924.19 532.32 902.15 FALSE TRUE 625.2545824 570.6415744 761.3670784 684.032704 768.230353 609.3655458 855.8310098 845.6742909 583.4517145 718.2913348 0.870474906 0.794443072 1.059969739 0.952305382 1.06952474 0.848354305 1.191481741 1.17734163 0.812277256 1 9.488425301 -5.761162577 24.99999655 1.020456157 0.832458948 0.273890429 0.117789128 8.656923387 781491.4603 0.030116386 0.07026948 1.73E-06 5.761162577 -0.187997209 RDVMQVANTT(ph)MS(ph)SR ddPTM_K562_Paclitaxel_30min_R1 1 RDVMQVANTTMSSR 14 1 C9J5X1;P08069 C9J5X1 IGF1R Tyrosine-protein kinase receptor;Insulin-like growth factor 1 receptor;Insulin-like growth factor 1 receptor alpha chain;Insulin-like growth factor 1 receptor beta chain 2 RDVMQVANT(0.215)T(0.744)MS(0.521)S(0.521)R 50.222 0.02878 5672500 192.53 66.353 281.17 139.31 168.93 0 52.123 248.8 172.26 57.574 TRUE FALSE 195.226014 73.59764493 210.185156 130.3752801 191.941126 0 62.01306715 227.662887 188.8063427 45.8403872 4.258821226 1.605519705 4.585152284 2.84411385 4.187161971 0 1.352804174 4.966425917 4.118777223 1 5.518547325 RDVQEIFR ddPTM_K562_Paclitaxel_30min_R1 2 RDVQEIFR 8 1 A0A140T9L4;A0A140T973;A0A140T9K1;A0A140T9X9;A0A140T996;F6S4E6;A0A0A0MT12;F6TRA5;F6UJC5;A0A140TA18;F6WLT2;A0A140T9X3;A0A0G2JJZ9;Q5STU3;Q13838;Q13838-2;K7EQN7;O00148-3;O00148-2;O00148 A0A140T9L4;K7EQN7 DDX39B;DDX39A Spliceosome RNA helicase DDX39B;ATP-dependent RNA helicase DDX39A 0 ; 145.9 2.63E-05 25477000 3368.6 3261 4108.5 3809.6 3336.7 2997.9 3372.2 3412.1 3346 3818.7 FALSE TRUE 3415.770793 3617.047008 3071.258362 3565.269307 3791.215031 3529.535472 4012.057346 3122.220807 3667.39825 3040.446844 1.123443681 1.189643231 1.010133878 1.172613596 1.246926924 1.160860773 1.319561746 1.026895377 1.206203706 1 11.57006765 -10.91163532 0.967184559 0.985655982 1.161978582 0.231953382 0.088178727 157.5198192 67.27177304 7.446224151 0.027157059 1.23E-11 10.91163532 0.1763226 RDVYLS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 RDVYLSPR 8 1 P38159;P38159-2;H3BUY5;H0Y6E7;H3BT71;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 RDVYLS(1)PR;RDVYLS(1)PR;RDVYLS(1)PR 88.187 0.01085 97927000 5817.3 6174.1 7221.6 7078.2 6350.4 5950.8 5798.5 7449.1 4774 8603.5 TRUE FALSE 5898.760148 6848.209117 5398.417764 6624.235933 7215.431993 7006.090827 6898.735105 6816.252459 5232.564031 6850.101977 0.861120049 0.999723674 0.788078452 0.967027346 1.053332055 1.022771756 1.007099621 0.995058538 0.763866589 1 12.74190975 -6.492390113 24.46565296 0.980530695 0.891799645 0.172884152 0.08869646 943.6042838 757196.3546 0.025031873 0.037067992 3.22E-07 6.492390113 -0.08873105 RDVYLS(ph)PRDDGYSTK ddPTM_K562_Paclitaxel_30min_R1 1 RDVYLSPRDDGYSTK 15 2 P38159;P38159-2;H3BUY5;H0Y6E7;H3BT71;Q96E39 P38159;Q96E39 RBMX;RBMXL1 "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed;RNA binding motif protein, X-linked-like-1" 1 RDVYLS(0.81)PRDDGY(0.006)S(0.041)T(0.143)K 102.78 0.0032914 0 2156.3 1760.1 3486.9 2257.8 1873.6 1668.3 1581.3 2281 2474.6 2778.8 TRUE FALSE 2186.494853 1952.27367 2606.58897 2112.994814 2128.81604 1964.149581 1881.34342 2087.214812 2712.296387 2212.479035 0.988255626 0.882391941 1.178130472 0.955034954 0.962185859 0.887759635 0.850332767 0.943382866 1.225908289 1 11.11144807 -8.735040578 24.99779968 1.11295421 0.955275222 0.288367533 0.098662031 242.1216031 229273.2062 0.067528489 0.025507052 1.84E-09 8.735040578 -0.157678987 RDYDDMS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 RDYDDMSPR 9 1 Q5T6W2;P61978-3;P61978;P61978-2 Q5T6W2 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 RDYDDMS(1)PR;RDYDDMS(1)PR;RDYDDMS(1)PR 122.33 0.0013467 362796000 6516.9 5271.6 8688.9 6862.1 5838.3 5678.7 5441.2 7059.4 7073.6 7313.5 TRUE FALSE 6608.156706 5847.171115 6495.279732 6421.99562 6633.575303 6685.737712 6473.639295 6459.659907 7753.050886 5823.004686 1.134836234 1.004150165 1.115451572 1.102866298 1.139201437 1.148159425 1.111735203 1.109334485 1.33145194 1 12.50754806 -6.461975542 1.450801242 1.145912841 1.072149219 0.084086431 0.082555125 0.936509572 3.950070808 0.027606238 0.051442365 3.45E-07 6.461975542 -0.073763622 RDYDDMSPR ddPTM_K562_Paclitaxel_30min_R1 2 RDYDDMSPR 9 1 Q5T6W2;P61978-3;P61978;P61978-2 Q5T6W2 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 ; 144.65 0.00077992 10878300 2135.42 2432.2 3462.8 2663.5 2401.2 2259.63 1960.83 2192.2 2371.7 2686.7 FALSE TRUE 2165.322468 2697.755821 2588.573313 2492.675031 2728.284093 2660.343654 2332.887256 2005.958927 2599.512382 2139.149065 1.012235427 1.26113503 1.210094871 1.165264764 1.275406252 1.243645755 1.090567878 0.93773686 1.215208619 1 11.0628213 -7.899756754 5.471073192 1.049471059 1.200082822 0.325836637 0.095125608 0.22854961 10.37316403 0.039023811 0.026029749 1.26E-08 7.899756754 0.150611762 REAPERPSLEDTEPSDS(ph)GDEMMDPASLEAEADQGLCR ddPTM_K562_Paclitaxel_30min_R1 1 REAPERPSLEDTEPSDSGDEMMDPASLEAEADQGLCR 37 2 Q9NXX6-2;Q9NXX6 Q9NXX6-2 NSMCE4A Non-structural maintenance of chromosomes element 4 homolog A 1 REAPERPS(0.007)LEDT(0.036)EPS(0.139)DS(0.649)GDEMMDPAS(0.169)LEAEADQGLCR 70.98 1.72E-06 5787600 255.67 280.31 322.69 315.24 164.42 277.9 265.04 400.51 211.58 262.26 TRUE FALSE 259.2501688 310.9151937 241.2229185 295.0219174 186.8167877 327.1816631 315.3299564 366.4841756 231.9032044 208.811268 1.241552581 1.488977088 1.155219835 1.412863971 0.894668135 1.56687743 1.510119446 1.755097697 1.110587597 1 7.706055756 RECPSDECGAGVFMASHFDR ddPTM_K562_Paclitaxel_30min_R1 2 RECPSDECGAGVFMASHFDR 20 1 P62979 P62979 RPS27A Ubiquitin-40S ribosomal protein S27a;Ubiquitin;40S ribosomal protein S27a 0 ; 109.89 0.00010818 31942000 3379.9 3386.1 4361 3609.6 3262.6 3717.8 3250.3 3812.9 3524.1 4774.2 FALSE TRUE 3427.229028 3755.805849 3260.011614 3378.096412 3707.021356 4377.099629 3867.027457 3488.970346 3862.605551 3801.215419 0.901613997 0.988053934 0.857623485 0.888688495 0.975220014 1.151500019 1.01731342 0.917856517 1.016150132 1 11.89224507 -6.974026998 7.347241766 1.020461991 0.913067446 0.423384746 0.061305528 0.198106805 40.59509932 0.020563979 0.023072921 1.06E-07 6.974026998 -0.107394546 REDSRGS(ph)LIPEGATGFPDQGNTGENTR ddPTM_K562_Paclitaxel_30min_R1 1 REDSRGSLIPEGATGFPDQGNTGENTR 27 2 A0A0J9YW64;A6NIW2;Q5JSL3 A0A0J9YW64 DOCK11 Dedicator of cytokinesis protein 11 1 REDS(0.434)RGS(0.566)LIPEGATGFPDQGNTGENTR 68.657 0.0050129 29380000 288.12 415.03 522.64 278.25 266.36 290.89 293.72 433.55 390.79 427.84 TRUE FALSE 292.1545689 460.3443789 390.6930681 260.4042904 302.6427415 342.4752572 349.4518367 396.7172214 428.3271256 340.6459732 0.857648679 1.351386528 1.146918205 0.764442591 0.888437749 1.005370045 1.025850485 1.164602704 1.257396709 1 8.412129342 -10.04264281 8.778278074 1.000025017 1.05097557 0.007749511 0.174235088 0 0 0.178258292 0.043233986 9.06E-11 10.04264281 0.050950553 REDTLCVRGQRGLEER ddPTM_K562_Paclitaxel_30min_R1 1 REDTLCVRGQRGLEER 16 3 Q9UDV7-2;Q9UDV7 Q9UDV7-2 ZNF282 Zinc finger protein 282 0 60.549 0.02232 11273000 1428.9 1312.8 925.53 1233.4 1315.3 1283.7 1312.4 1476.3 1449.3 1119.8 FALSE TRUE 1448.909009 1456.135944 691.8685047 1154.295244 1494.466128 1511.346171 1561.421049 1350.8791 1588.511741 891.5841453 1.625095081 1.633200805 0.775999112 1.29465654 1.676191906 1.695124548 1.751288487 1.515144821 1.781673383 1 9.800227152 -6.756007917 24.88758148 1.610991373 1.314003835 0.117609033 0.305144239 229.0437182 1049497.024 0.091400655 0.114553687 1.75E-07 6.756007917 -0.296987538 REEDEENDNDNES(ph)DHDEADS ddPTM_K562_Paclitaxel_30min_R1 1 REEDEENDNDNESDHDEADS 20 1 H0YBP8;Q9NRG0 H0YBP8 CHRAC1 Chromatin accessibility complex protein 1 1 REEDEENDNDNES(0.918)DHDEADS(0.082) 63.158 0.015067 10769000 1837.1 2216.4 2702.5 2550 2026.8 1902.3 1996 2280.1 1448 2762.4 TRUE FALSE 1862.825068 2458.394047 2020.220451 2386.454413 2302.884474 2239.646195 2374.73058 2086.391273 1587.08687 2199.421364 0.846961432 1.117745825 0.91852361 1.085037389 1.047041059 1.018288825 1.079706972 0.948609169 0.721592913 1 11.10290831 -8.528185082 24.77189895 0.852231253 1.019816727 0.2826479 0.098597875 143.619285 670438.35 0.060128312 0.022890735 2.96E-09 8.528185082 0.167585474 REEELREYQER ddPTM_K562_Paclitaxel_30min_R1 1 REEELREYQER 11 2 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 90.913 0.0097893 5247300 438.63 430.11 622.34 508.81 389.29 624.78 584.76 582.53 572.73 439.51 FALSE TRUE 444.7721733 477.0708643 465.22257 476.1772039 442.3178887 735.5759607 695.7151573 533.0404405 627.7432755 349.9376207 1.271004165 1.363302589 1.329444285 1.360748818 1.263990673 2.102020237 1.988111927 1.523244169 1.793871931 1 8.450953963 -7.227180915 24.93636594 1.733318905 1.323275892 0.285006746 0.282082688 692.2434287 503876.9222 0.089651998 0.089647585 5.93E-08 7.227180915 -0.410043013 REEQTDTS(ph)DGESVTHHIR ddPTM_K562_Paclitaxel_30min_R1 4 REEQTDTSDGESVTHHIR 18 1 A2AB27;P36915 A2AB27 GNL1 Guanine nucleotide-binding protein-like 1 1 REEQTDT(0.032)S(0.934)DGES(0.034)VTHHIR;REEQT(0.002)DT(0.07)S(0.927)DGESVTHHIR;REEQTDT(0.027)S(0.972)DGES(0.001)VTHHIR;REEQT(0.001)DT(0.287)S(0.711)DGES(0.001)VTHHIR 100.19 0.0004434 563610000 5477 5563.9 7590.9 6698.4 5802.5 5518.57 5621.7 6854 3931.3 6863.1 TRUE FALSE 5553.694898 6171.385418 5674.483412 6268.794605 6592.898737 6497.210905 6688.388228 6271.709919 4308.918931 5464.396453 1.016341868 1.129380979 1.038446507 1.147207136 1.206519109 1.189007965 1.223993955 1.147740647 0.788544347 1 12.41584644 -8.746666812 24.99623673 0.894272205 1.141015712 0.603158147 0.078815642 135.4191029 229141.1894 0.054969106 0.020585235 1.79E-09 8.746666812 0.246743508 REPAEQPGDGER ddPTM_K562_Paclitaxel_30min_R1 2 REPAEQPGDGER 12 1 Q15424-2;Q15424;Q15424-3;Q15424-4;Q14151 Q15424-2;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 0 ; 111.31 0.0083248 4670200 1134.01 1023.86 1359.25 1162.34 1418.25 1190.58 951.3 1255.29 1492.88 1321.34 FALSE TRUE 1149.889639 1135.648497 1016.090527 1087.792715 1611.439661 1401.712646 1131.804209 1148.645279 1636.277794 1052.050183 1.092998849 1.079462288 0.965819448 1.03397417 1.531713684 1.332362913 1.075808196 1.091816054 1.555322951 1 10.03898781 REPAEQPGDGERTDCEPVGLEPAVEQSSAASELAEASSEELAEAPTEAPS(ph)PEAR ddPTM_K562_Paclitaxel_30min_R1 1 REPAEQPGDGERTDCEPVGLEPAVEQSSAASELAEASSEELAEAPTEAPSPEAR 54 2 Q15424-2;Q15424;Q15424-3;Q15424-4;Q14151 Q15424-2;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 REPAEQPGDGERTDCEPVGLEPAVEQS(0.002)S(0.002)AAS(0.003)ELAEAS(0.006)S(0.006)EELAEAPT(0.019)EAPS(0.962)PEAR 43.057 9.27E-05 52320000 1010.6 1074.8 1474.2 1110.4 889.57 1198.2 814.95 1125.2 1377.6 1010 TRUE FALSE 1024.751518 1192.150299 1102.019977 1039.183914 1010.744495 1410.683946 969.5825082 1029.607237 1509.924635 804.1614456 1.274310679 1.482476318 1.370396434 1.292257817 1.256892506 1.754229768 1.205706284 1.280348918 1.87763868 1 9.65134136 -11.40320606 5.286869737 0.999711428 1.41250236 0.258044676 0.213962134 0.000699558 7.90E-05 0.199138073 0.048264916 3.95E-12 11.40320606 0.412790933 REQGGSGLGSGSS(ph)GGGGSTSGLGSGYIGR ddPTM_K562_Paclitaxel_30min_R1 2 REQGGSGLGSGSSGGGGSTSGLGSGYIGR 29 1 E9PG46;Q2M2I8-2;Q2M2I8 E9PG46 AAK1 AP2-associated protein kinase 1 1 REQGGSGLGSGS(0.125)S(0.875)GGGGSTSGLGSGYIGR;REQGGSGLGS(0.014)GS(0.211)S(0.773)GGGGS(0.001)TSGLGSGYIGR 138.53 2.12E-24 32500000 766.4 457.95 773.55 826.15 716.28 605.66 549.33 766.3 561.03 743.79 TRUE FALSE 777.1319645 507.9505297 578.2577354 773.1644367 813.8494627 713.0652971 653.5624998 701.1980319 614.9194382 592.2051897 1.312268075 0.857727251 0.976448274 1.305568492 1.374269386 1.20408485 1.103608194 1.18404574 1.038355369 1 9.209953323 -4.878036329 19.84131906 1.130892388 49.01156858 0.127869138 0.149277942 1408.96352 229106.0701 0.038993367 1444.594573 1.32E-05 4.878036329 47.88067619 RESDPPT(ph)MACT(ph)RPPS(ph)APR ddPTM_K562_Paclitaxel_30min_R1 1 RESDPPTMACTRPPSAPR 18 2 F8VP57;B7ZKW7;B7ZKJ3;P54756-3;P54756-2;P54756 F8VP57 EPHA5 Receptor protein-tyrosine kinase;Ephrin type-A receptor 5 3 RESDPPT(1)MACT(1)RPPS(1)APR 85.522 0.0077056 11818000 187.41 304.33 223.39 129.2 255.16 234.46 232.66 183.33 241.66 177.91 TRUE FALSE 190.0343182 337.5577786 166.9924316 120.9136903 289.9171119 276.038189 276.8060204 167.7549722 264.8725228 141.6518443 1.341559082 2.38301012 1.178893451 0.853597712 2.046687872 1.948708753 1.954129307 1.184276654 1.869884039 1 7.146205576 -11.21960936 3.717212746 0.999268885 1.64210426 0.149827748 0.457396909 222952500.4 335910469.7 2025320.586 0.116068376 6.03E-12 11.21960936 0.642835375 RFDAQTGADREVQR ddPTM_K562_Paclitaxel_30min_R1 1 RFDAQTGADREVQR 14 2 P43686-2;P43686 P43686-2 PSMC4 26S protease regulatory subunit 6B 0 79.886 0.018594 13390000 1060.2 1034.9 1616 1282.9 1177.9 1193.7 1200.6 1253.7 1761.8 1653.6 FALSE TRUE 1075.046071 1147.893882 1208.020814 1200.620536 1338.349922 1405.385935 1428.407582 1147.19036 1931.028762 1316.595412 0.816534875 0.871865321 0.917533817 0.911913048 1.016523307 1.067439489 1.084925231 0.871330971 1.466683496 1 10.36259636 -6.708152346 0.584058674 1.126534509 0.807276532 0.366082535 0.140400327 1.190473271 0.823234092 0.097007293 0.207565897 1.96E-07 6.708152346 -0.319257978 RFDDAVVQSDMK ddPTM_K562_Paclitaxel_30min_R1 2 RFDDAVVQSDMK 12 1 P11142-2;P11142;E9PKE3;E9PN89;E9PNE6;E9PQQ4;E9PQK7;E9PK54;E9PLF4;E9PN25;E9PPY6 P11142-2 HSPA8 Heat shock cognate 71 kDa protein 0 ; 206.46 1.12E-09 44576000 10317.8 9387.7 15668.1 11453.8 8366.4 8138.3 9005.3 13341.6 7097.9 16647.6 FALSE TRUE 10462.28103 10412.68083 11712.49437 10719.20453 9506.045324 9581.513238 10714.00866 12208.1478 7779.685009 13254.80998 0.789319579 0.785577526 0.883641062 0.808702995 0.717177035 0.72287066 0.808310996 0.921035294 0.586932971 1 13.69422837 -11.37986877 4.373428807 1.000415594 0.785824115 0.358697695 0.087820753 0.000346582 4.91E-05 0.082812687 0.020046484 4.17E-12 11.37986877 -0.214591478 RFDEILEASDGIMVAR ddPTM_K562_Paclitaxel_30min_R1 1 RFDEILEASDGIMVAR 16 1 B4DNK4;H3BTN5;P14618-2;P14618;H3BR70;P14618-3 B4DNK4 PKM Pyruvate kinase;Pyruvate kinase PKM 0 122.5 0.00016318 6168400 3406.4 2985.3 4875.2 4137.9 3522.1 3819.2 2534.2 3396.1 3993.8 3509.9 FALSE TRUE 3454.10011 3311.24515 3644.395464 3872.513615 4001.86965 4496.481496 3015.051221 3107.580107 4377.422335 2794.580453 1.235999524 1.184880953 1.304093951 1.385722716 1.432010893 1.609000553 1.07889226 1.112002377 1.566396963 1 11.44841599 -11.21280896 4.843273885 0.999950942 1.31863542 0.245648623 0.169751818 9.32E-05 1.51E-05 0.170282474 0.041293221 6.13E-12 11.21280896 0.318684478 RFIGS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 RFIGSPR 7 1 K7ERJ3;P23443-4;P23443-3;P23443-5;P23443-2;P23443 K7ERJ3 RPS6KB1 Ribosomal protein S6 kinase beta-1 1 RFIGS(1)PR 80.455 0.022321 4390600 1685.6 1649.2 1680.8 1415.7 1393.9 1071.6 1344.7 1597.3 1721 1878.6 TRUE FALSE 1709.203601 1829.265233 1256.461252 1324.903338 1583.772779 1261.633214 1599.849805 1461.599395 1886.30974 1495.740289 1.142714155 1.222983192 0.840026348 0.885784349 1.058855465 0.843484142 1.069604006 0.977174584 1.261121168 1 10.54664398 -10.6351495 8.903576643 1.000002496 1.023622186 0.00063962 0.14177552 0 0 0.13983512 0.033914998 2.32E-11 10.6351495 0.02361969 RFPEAEALS(ph)PEQAAHYLR ddPTM_K562_Paclitaxel_30min_R1 4 RFPEAEALSPEQAAHYLR 18 1 Q2NKX8 Q2NKX8 ERCC6L DNA excision repair protein ERCC-6-like 1 RFPEAEALS(1)PEQAAHYLR;RFPEAEALS(1)PEQAAHYLR;RFPEAEALS(1)PEQAAHYLR;RFPEAEALS(1)PEQAAHYLR 103.2 0.00041568 138579000 7389.4 7347.3 8178.3 7810.4 6991.3 7073.2 7029.9 7869.5 8103.6 8847.7 TRUE FALSE 7492.874398 8149.503061 6113.587017 7309.475902 7943.633424 8327.532707 8363.786826 7200.936855 8881.986988 7044.533883 1.063643745 1.156854832 0.867848337 1.037609588 1.127630806 1.182126858 1.187273277 1.022202033 1.26083388 1 12.78228854 -6.762565865 5.478454111 1.137175671 1.027999474 0.19476336 0.097684681 0.265417914 25.00768894 0.029482131 0.035840702 1.73E-07 6.762565865 -0.109176197 RFS(ph)DS(ph)EGEETVPEPR ddPTM_K562_Paclitaxel_30min_R1 2 RFSDSEGEETVPEPR 15 1 A0A1B0GWH8;H3BQ48;A0A1B0GWD3;A0A1B0GV71;A0A1B0GW34;A0A0D9SFH9;H3BPL0;Q9UBD8;A0A1B0GV41;H3BR84;O95090;H3BR00;Q9UP10;Q9UBH5;A0A0D9SF04;Q13286-5;Q13286-4;Q13286-6;Q13286-2;Q13286-7;Q13286-3;Q13286 A0A1B0GWH8 CLN3 Battenin 2 RFS(1)DS(0.998)EGEET(0.002)VPEPR;RFS(1)DS(1)EGEETVPEPR 159.54 1.56E-05 30084000 3394.6 3049.6 4465.9 3604.8 2990.7 3032.3 2545.9 3547 3093.3 3906.9 TRUE FALSE 3442.134873 3382.565641 3338.428311 3373.604262 3398.083973 3570.035829 3028.971235 3245.66021 3390.425286 3110.671635 1.106556807 1.087406849 1.073217846 1.084525999 1.092395589 1.147673637 0.973735447 1.043395315 1.08993352 1 11.6030104 -8.868201912 0.301131398 0.991793813 1.103988154 0.29870836 0.040740335 2.462210441 0.730183912 0.102177676 0.066794448 1.35E-09 8.868201912 0.112194341 RFS(ph)DSEGEETVPEPR ddPTM_K562_Paclitaxel_30min_R1 2 RFSDSEGEETVPEPR 15 1 A0A1B0GWH8;H3BQ48;A0A1B0GWD3;A0A1B0GV71;A0A1B0GW34;A0A0D9SFH9;H3BPL0;Q9UBD8;A0A1B0GV41;H3BR84;O95090;H3BR00;Q9UP10;Q9UBH5;A0A0D9SF04;Q13286-5;Q13286-4;Q13286-6;Q13286-2;Q13286-7;Q13286-3;Q13286 A0A1B0GWH8 CLN3 Battenin 1 RFS(0.896)DS(0.104)EGEETVPEPR;RFS(0.883)DS(0.117)EGEETVPEPR 153.36 2.64E-05 51151000 1457.9 1492.85 2117.42 1817.25 1441.52 1642.79 1681.51 1852.62 1516.89 1930.8 TRUE FALSE 1478.315098 1655.844411 1582.851133 1700.699719 1637.879429 1934.115741 2000.567744 1695.228367 1662.594062 1537.3019 0.961629656 1.077110756 1.029629335 1.106288699 1.065424709 1.258123561 1.301349946 1.102729638 1.081501338 1 10.5861848 -6.611513366 1.577552229 1.159494652 1.025461146 0.237285785 0.08808377 0.527251921 2.690839721 0.032190524 0.049997888 2.45E-07 6.611513366 -0.134033506 RFS(ph)FCCSPEPEAEAEAAAGPGPCER ddPTM_K562_Paclitaxel_30min_R1 3 RFSFCCSPEPEAEAEAAAGPGPCER 25 1 E7EMC7;Q13501;D6RBF1;C9J6J8;E3W990 E7EMC7 SQSTM1 Sequestosome-1 1 RFS(0.632)FCCS(0.368)PEPEAEAEAAAGPGPCER;RFS(0.703)FCCS(0.297)PEPEAEAEAAAGPGPCER;RFS(0.995)FCCS(0.005)PEPEAEAEAAAGPGPCER 150.34 6.74E-26 151346000 4378.69 3681.91 5699.21 4829.28 3886.35 3952.6 2866.9 3695.8 4471.21 3773.37 TRUE FALSE 4440.005169 4083.913385 4260.373949 4519.551596 4415.736666 4653.538113 3410.879309 3381.818722 4900.689698 3004.355123 1.477856308 1.35933111 1.418066032 1.504333346 1.469778534 1.548930776 1.135311629 1.125638809 1.631195214 1 11.55283964 -7.760244089 24.99998034 1.233506308 1.458472611 0.349556357 0.160065772 39.07061838 817205.3417 0.061923436 0.045245811 1.74E-08 7.760244089 0.224966303 RFS(ph)FSQR ddPTM_K562_Paclitaxel_30min_R1 1 RFSFSQR 7 1 A0A0D9SFK2;Q92614-3;Q92614-4;Q92614 A0A0D9SFK2 MYO18A Unconventional myosin-XVIIIa 1 RFS(0.997)FS(0.003)QR 72.848 0.026207 40781000 1522.5 1345.3 1680.8 1605.7 1538.6 1794.8 1860.7 1733.8 1291.1 2017.2 TRUE FALSE 1543.819697 1492.184404 1256.461252 1502.717589 1748.183369 2113.08258 2213.758111 1586.502868 1415.115924 1606.093533 0.96122652 0.929076902 0.782308892 0.935635166 1.088469216 1.315665954 1.378349434 0.987802289 0.881091851 1 10.6493402 -6.760329425 3.859011823 1.134895093 0.890742696 0.31911622 0.146737191 0.263372991 8.610680466 0.050407022 0.062111612 1.74E-07 6.760329425 -0.244152396 RFS(ph)GTAVYENPQR ddPTM_K562_Paclitaxel_30min_R1 1 RFSGTAVYENPQR 13 1 Q6AHZ1-2;Q6AHZ1 Q6AHZ1-2 ZNF518A Zinc finger protein 518A 1 RFS(0.97)GT(0.03)AVYENPQR 107.69 0.010377 34232000 1768.4 1870.5 2550 1863.4 1743.8 1658.4 1624 1757.7 1775.6 2286.1 TRUE FALSE 1793.163056 2074.727516 1906.220962 1743.889864 1981.335083 1952.493955 1932.145522 1608.372414 1946.154314 1820.191565 0.985150734 1.139840199 1.047263925 0.958080401 1.088531076 1.07268597 1.061506689 0.8836281 1.069203017 1 10.82987458 RFS(ph)LS(ph)PSLGPQASR ddPTM_K562_Paclitaxel_30min_R1 1 RFSLSPSLGPQASR 14 1 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 2 RFS(0.935)LS(0.693)PS(0.369)LGPQAS(0.004)R 84.859 0.025546 41722000 2527.7 2795.6 3639.6 3060.1 2741.5 2734.1 2851.6 3186.3 2896.1 3443.4 TRUE FALSE 2563.095599 3100.833062 2720.737966 2863.838883 3114.938714 3218.954246 3392.676214 2915.603927 3174.283345 2741.63319 0.934879111 1.131016751 0.992378549 1.044574049 1.136161732 1.174100991 1.237465401 1.063455147 1.157807455 1 11.42081985 -6.733756542 4.69738686 1.139620297 1.029123199 0.301077809 0.075524858 0.232490833 12.2180081 0.022199878 0.027850587 1.85E-07 6.733756542 -0.110497098 RFS(ph)QGPTPAAAVPEGTAAEGAPR ddPTM_K562_Paclitaxel_30min_R1 1 RFSQGPTPAAAVPEGTAAEGAPR 23 1 Q96G46-2;Q96G46 Q96G46-2 DUS3L tRNA-dihydrouridine(47) synthase [NAD(P)(+)]-like 1 RFS(0.83)QGPT(0.17)PAAAVPEGTAAEGAPR 112.56 7.56E-06 16095000 897.86 1075.8 1311.5 787.82 822.7 741.74 853.63 897.84 767.56 1065.5 TRUE FALSE 910.4328101 1193.259482 980.3956046 737.2927514 934.7656684 873.2771745 1015.601836 821.5628879 841.2875675 848.3505151 1.073180005 1.406564222 1.155649212 0.869089767 1.101862558 1.0293825 1.197148841 0.968423869 0.991674494 1 9.72851666 -6.004871798 24.97597354 1.030550102 1.250180791 0.395921309 0.110000343 193.0128585 989528.5464 0.02779363 0.055491108 9.89E-07 6.004871798 0.219630688 RFS(ph)SSDFSDLSNGEELQETCSSSLRR ddPTM_K562_Paclitaxel_30min_R1 1 RFSSSDFSDLSNGEELQETCSSSLRR 26 2 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;H7C1G8;H7C4B4 P23497-2 SP100 Nuclear autoantigen Sp-100 1 RFS(0.426)S(0.136)S(0.044)DFS(0.079)DLS(0.315)NGEELQETCSSSLRR 77.469 0.0010568 48359000 404.41 312.32 400.16 259.48 320.66 275.86 347.15 400.03 406.94 615.18 TRUE FALSE 410.0729877 346.4201538 299.1346589 242.8381142 364.3393208 324.7798977 413.0199003 366.0449546 446.0284053 489.8059783 0.837215154 0.707259954 0.610720718 0.4957843 0.743844169 0.663078672 0.843231644 0.747326433 0.910622624 1 8.936066573 -8.620812799 0.796428359 0.99696354 0.66663698 0.56595726 0.092633956 0.456901498 0.601512148 0.091798437 0.036847801 2.39E-09 8.620812799 -0.33032656 RFSDS(ph)EGEETVPEPR ddPTM_K562_Paclitaxel_30min_R1 1 RFSDSEGEETVPEPR 15 1 A0A1B0GWH8;H3BQ48;A0A1B0GWD3;A0A1B0GV71;A0A1B0GW34;A0A0D9SFH9;H3BPL0;Q9UBD8;A0A1B0GV41;H3BR84;O95090;H3BR00;Q9UP10;Q9UBH5;A0A0D9SF04;Q13286-5;Q13286-4;Q13286-6;Q13286-2;Q13286-7;Q13286-3;Q13286 A0A1B0GWH8 CLN3 Battenin 1 RFS(0.029)DS(0.971)EGEETVPEPR 187.56 1.21E-06 20180000 983.45 601.3 825.99 666.56 673.13 798.25 517.66 851.61 716.68 822.97 TRUE FALSE 997.2213342 666.9519675 617.4586088 623.809825 764.8217022 939.8084295 615.8832826 779.2604149 785.5203162 655.2482623 1.52189848 1.017861482 0.942327732 0.952020571 1.167224312 1.4342784 0.939923565 1.189259796 1.198813277 1 9.355897812 -14.99957145 0.010197476 9.54E-06 2.075636551 0.036237684 0.193350171 88427.20962 68.33574206 8107.754144 5955.557286 1.00E-15 14.99957145 2.075627016 RFSFCCS(ph)PEPEAEAEAAAGPGPCER ddPTM_K562_Paclitaxel_30min_R1 1 RFSFCCSPEPEAEAEAAAGPGPCER 25 1 E7EMC7;Q13501;D6RBF1;C9J6J8;E3W990 E7EMC7 SQSTM1 Sequestosome-1 1 RFS(0.181)FCCS(0.819)PEPEAEAEAAAGPGPCER 75.524 0.00017992 27882000 611.39 461.09 745.54 641.06 557.36 490.6 384.46 657.22 562.98 622.7 TRUE FALSE 619.9513463 511.4333655 557.3192063 599.9452809 633.2818682 577.6010216 457.409278 601.3850588 617.0567445 495.7933982 1.250422754 1.031545332 1.124095658 1.210071137 1.277310006 1.165003455 0.922580413 1.212975124 1.244584431 1 8.953595251 -7.555636303 24.99928871 1.102927122 1.174418292 0.119373166 0.107645642 527.7160774 402728.2082 0.042807961 0.033159164 2.78E-08 7.555636303 0.07149117 RFSSS(ph)DFSDLSNGEELQETCSSSLR ddPTM_K562_Paclitaxel_30min_R1 1 RFSSSDFSDLSNGEELQETCSSSLR 25 1 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;H7C1G8;H7C4B4 P23497-2 SP100 Nuclear autoantigen Sp-100 1 RFS(0.174)S(0.174)S(0.53)DFS(0.123)DLSNGEELQETCSSSLR 76.744 0.00016431 21440000 278.5 202.23 328.56 168.13 160.99 230.41 121.35 377.24 235.54 163.82 TRUE FALSE 282.3998592 224.3101553 245.6109644 157.3468943 182.9195636 271.2699784 144.375529 345.1911073 258.1646694 130.4333941 2.165088636 1.719729498 1.88303744 1.206339032 1.40239825 2.079758641 1.106890839 2.646493329 1.979283536 1 7.027169471 -8.24876964 24.94917945 1.984666416 1.653115042 0.027121483 0.496979294 1879.184513 3700489.702 0.226323593 0.129528496 5.64E-09 8.24876964 -0.331551374 RFVEVGR ddPTM_K562_Paclitaxel_30min_R1 1 RFVEVGR 7 1 E7EPB3;P50914 E7EPB3 RPL14 60S ribosomal protein L14 0 93.195 0.024877 8636700 2595.2 2413.6 2844 2662.4 2422.7 2413.4 2354.7 2921.2 2557.8 3404.9 FALSE TRUE 2631.540807 2677.12501 2125.997026 2491.64558 2752.712757 2841.382604 2801.492033 2673.025826 2803.488119 2710.979511 0.970697416 0.987512078 0.784217298 0.919094213 1.015394158 1.048101836 1.033387387 0.986000011 1.034123684 1 11.40459849 -6.757540386 5.748936644 1.021378696 0.910436565 0.479157099 0.053152902 0.145818357 16.38519747 0.017059996 0.020862728 1.75E-07 6.757540386 -0.110942131 RGAAGDWGER ddPTM_K562_Paclitaxel_30min_R1 1 RGAAGDWGER 10 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 107.11 0.0091141 4402700 319.43 228.52 397.17 412.45 278.83 316.7 303.36 446.65 447.1 353.69 FALSE TRUE 323.9030055 253.4705864 296.8995214 385.9973031 316.8113666 372.8622983 360.9209764 408.7042946 490.0459527 281.6077839 1.150191948 0.900083737 1.054301544 1.370691171 1.125009267 1.324048267 1.281644177 1.451324566 1.740171901 1 8.137543401 -6.692108301 0.766743204 1.405696472 1.000329229 0.292911891 0.197137528 0.851085057 1.063941432 0.10906917 0.207694201 2.03E-07 6.692108301 -0.405367243 RGADDDRPSWR ddPTM_K562_Paclitaxel_30min_R1 2 RGADDDRPSWR 11 2 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ; 73.841 0.028648 33226900 2170.93 1976.44 2630.93 2285.89 1650.97 1709.35 1544.85 2205.03 2001.49 2180.01 FALSE TRUE 2201.329718 2192.234403 1966.719183 2139.283247 1875.860065 2012.479222 1837.977223 2017.698938 2193.742057 1735.722765 1.268249609 1.263009535 1.133083705 1.232502845 1.080737145 1.159447385 1.058911745 1.162454615 1.263878138 1 10.76132082 -5.639927888 0.943957214 1.131560637 1.31441219 0.317492865 0.074425489 1.53385153 1.627149297 0.026040814 0.255177989 2.29E-06 5.639927888 0.182851553 RGAEDDRGPWR ddPTM_K562_Paclitaxel_30min_R1 1 RGAEDDRGPWR 11 2 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 72.096 0.03073 11583000 883.77 972.55 1284.2 961.48 982.7 1070 990.49 1127.1 1046.4 1289.1 FALSE TRUE 896.1455067 1078.736298 959.9878272 899.8149762 1116.560377 1259.749476 1178.430307 1031.34582 1146.911395 1026.380712 0.873112185 1.051009908 0.935313588 0.87668734 1.087861808 1.227370567 1.148141516 1.004837491 1.117432724 1 10.00335025 -6.845960062 6.923855928 1.108313829 0.942916098 0.516203238 0.077114527 0.185422245 12.63174599 0.024611741 0.02804485 1.43E-07 6.845960062 -0.165397731 RGAEEEEEEEDDDS(ph)GEEMK ddPTM_K562_Paclitaxel_30min_R1 1 RGAEEEEEEEDDDSGEEMK 19 1 Q08495-3;Q08495-2;Q08495;Q08495-4;E5RFK4 Q08495-3 DMTN Dematin 1 RGAEEEEEEEDDDS(1)GEEMK 89.043 0.0011835 28678000 2024.4 1297.7 3416.5 2351.9 1843.9 1491.7 1538.8 2139.3 1642.5 2877.3 TRUE FALSE 2052.747846 1439.387275 2553.96232 2201.059661 2095.070397 1756.23205 1830.779267 1957.553112 1800.269464 2290.904681 0.896042451 0.628305179 1.114826969 0.96078186 0.914516617 0.766610704 0.799151218 0.854489114 0.785833422 1 11.16170172 -7.230108387 23.89504962 0.829493334 0.90262964 0.052159808 0.126620047 1198.421756 913993.6129 0.042553933 0.042548514 5.89E-08 7.230108387 0.073136306 RGAMEHAEGS(ph)PQR ddPTM_K562_Paclitaxel_30min_R1 1 RGAMEHAEGSPQR 13 1 Q16587-5;B5MDQ6 Q16587-5 ZNF74 1 RGAMEHAEGS(1)PQR 73.833 0.027585 655510 460.8 450.76 673 377.95 499.47 474.41 274.71 836.82 474.78 456.66 TRUE FALSE 467.2526217 499.9755012 503.0928264 353.7099786 567.5062701 558.5399525 326.8347884 765.7269177 520.3847404 363.5924413 1.285099932 1.375098721 1.383672401 0.972819945 1.56083077 1.536170418 0.898904243 2.1060034 1.431230909 1 8.506178398 RGAPS(ph)SPATGVLPSPQGK ddPTM_K562_Paclitaxel_30min_R1 2 RGAPSSPATGVLPSPQGK 18 1 Q5SRE5-2;Q5SRE5 Q5SRE5-2 NUP188 Nucleoporin NUP188 homolog 1 RGAPS(0.489)S(0.489)PAT(0.023)GVLPSPQGK;RGAPS(0.499)S(0.499)PAT(0.001)GVLPSPQGK 67.668 0.017797 56218000 6628 5974.4 11763.5 8161.1 5901 5595.7 5445.8 7746.8 7688.9 8565.2 TRUE FALSE 6720.812449 6626.705196 8793.658936 7637.683574 6704.816105 6588.018827 6479.112121 7088.660986 8427.4532 6819.607538 0.985513083 0.971713571 1.289467009 1.119959401 0.983167443 0.966040757 0.950071113 1.039452922 1.235768063 1 12.735473 -6.752674549 24.9245037 1.023953283 1.097224274 0.069609204 0.110391083 517.7689588 1472369.34 0.034986971 0.044492194 1.77E-07 6.752674549 0.073270991 RGAT(ph)PPAPPR ddPTM_K562_Paclitaxel_30min_R1 2 RGATPPAPPR 10 1 Q6SPF0 Q6SPF0 SAMD1 Atherin 1 RGAT(1)PPAPPR;RGAT(1)PPAPPR 107.09 0.0070542 12949800 859.44 918.55 1555.01 1333.26 903.35 820.96 1025.54 1065.61 795.54 1467.78 TRUE FALSE 871.4748116 1018.840395 1162.428493 1247.750671 1026.401564 966.5457291 1220.130861 975.0797792 871.9551716 1168.64563 0.74571349 0.871812951 0.994680049 1.067689502 0.878282978 0.827064855 1.044055469 0.834367368 0.74612453 1 10.19062181 -10.2321059 12.6124599 0.999989634 0.898450787 0.081205814 0.107681687 0 0 0.108635777 0.026348046 5.86E-11 10.2321059 -0.101538847 RGCPVS(ph)PPGWELSPSPR ddPTM_K562_Paclitaxel_30min_R1 2 RGCPVSPPGWELSPSPR 17 1 Q8IYL2;Q8IYL2-3;Q8IYL2-2 Q8IYL2 TRMT44 Probable tRNA (uracil-O(2)-)-methyltransferase 1 RGCPVS(1)PPGWELSPSPR;RGCPVS(1)PPGWELSPSPR 115.31 0.00028896 26839500 1583.61 1651.7 1878.41 1642.5 1443.41 1656.73 1901.3 2071.77 2036.95 2173.2 TRUE FALSE 1605.785426 1832.038192 1404.182164 1537.157402 1640.026879 1950.527804 2262.06175 1895.760207 2232.608149 1730.300647 0.928038389 1.058797611 0.81152496 0.888375904 0.947827698 1.127276816 1.307322952 1.095624746 1.290300707 1 10.75680702 -7.301341893 3.618201854 1.18481114 0.923238402 0.583589007 0.100529048 0.161022452 4.43764792 0.035347559 0.031952176 5.00E-08 7.301341893 -0.261572738 RGCS(ph)PPAPAGSPR ddPTM_K562_Paclitaxel_30min_R1 1 RGCSPPAPAGSPR 13 1 Q9C073;D6RFX7 Q9C073 FAM117A Protein FAM117A 1 RGCS(1)PPAPAGSPR 74.783 0.02636 6267900 1316.3 1473.6 1974.3 1599.4 1411.8 1239 1354.2 1458.4 1406.7 1648.5 TRUE FALSE 1334.732261 1634.492631 1475.863547 1496.821643 1604.111062 1458.719254 1611.152381 1334.499817 1541.81982 1312.534795 1.016911907 1.245294706 1.124437655 1.140405304 1.222147457 1.111375682 1.227512129 1.016734811 1.174688721 1 10.35813995 -9.634844648 0.658751903 0.997245409 1.154107214 0.230760913 0.076587079 2.974276776 1.978538405 0.09735301 0.027796856 2.32E-10 9.634844648 0.156861805 RGDDSFGDKYR ddPTM_K562_Paclitaxel_30min_R1 1 RGDDSFGDKYR 11 2 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 78.939 0.02259 12785000 1851.9 1676.8 2529.7 1560.6 1407.6 1192.8 1602.5 2547.2 1487.3 2544.1 FALSE TRUE 1877.832314 1859.878695 1891.045948 1460.510101 1599.338951 1404.326332 1906.566009 2330.799461 1630.16181 2025.611024 0.927044873 0.918181562 0.933568156 0.721021995 0.789558771 0.693285293 0.941230072 1.150664878 0.804775345 1 10.98414145 -11.16119173 7.002059245 1.000000166 0.876044222 0.081447875 0.125436449 3.50E-07 4.19E-08 0.130859111 0.031737954 6.90E-12 11.16119173 -0.123955943 RGDDSFGDKYRDR ddPTM_K562_Paclitaxel_30min_R1 1 RGDDSFGDKYRDR 13 3 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 0 46.88 0.030006 21476000 1417.9 1519.7 2220.5 1402.5 1196.3 1147.2 1048.2 1431 2283 1697.4 FALSE TRUE 1437.754975 1685.625985 1659.907312 1312.549927 1359.256314 1350.639813 1247.090478 1309.427618 2502.292351 1351.468948 1.063846103 1.247254691 1.228224529 0.971202431 1.005762149 0.999386493 0.922766653 0.968892123 1.851535216 1 10.40031265 -11.28360426 4.979673249 0.99996719 1.121179418 0.020908209 0.260243566 9.35E-05 1.34E-05 0.248504145 0.060254803 5.20E-12 11.28360426 0.121212229 RGDDSFGDSYDSR ddPTM_K562_Paclitaxel_30min_R1 1 RGDDSFGDSYDSR 13 1 F8VP89 F8VP89 EIF4B 0 115.34 0.0048867 6480100 1327.6 1208.1 1421.9 1206.5 983.41 1129.4 1095.6 1286.4 1201.4 1544.9 FALSE TRUE 1346.190496 1340.004444 1062.923759 1129.12049 1117.367091 1329.683232 1303.484381 1177.112291 1316.799838 1230.048532 1.094420635 1.089391523 0.864131562 0.917947919 0.908392687 1.081000625 1.059701586 0.956964103 1.070526734 1 10.26449952 -7.27027439 24.9775635 1.032577799 0.971906887 0.127696356 0.076598135 1553.864623 4392937.35 0.029320007 0.02622595 5.37E-08 7.27027439 -0.060670912 RGDDWNDREWDR ddPTM_K562_Paclitaxel_30min_R1 1 RGDDWNDREWDR 12 2 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;C9JUL9 Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 0 113.67 0.002752 13150000 628.1 656.35 790.4 558.64 862.52 845.6 657.56 773.85 396.01 660.54 FALSE TRUE 636.8953379 728.0125126 590.8537445 522.8113308 980.0098266 995.5552872 782.3285773 708.1066123 434.0485299 525.9215854 1.211008172 1.384260568 1.123463575 0.994086087 1.863414345 1.892972859 1.487538445 1.346411009 0.825310354 1 9.0387039 -8.689900359 5.311773824 0.914273953 1.426372712 0.347225094 0.27515534 0.237673779 11.84244325 0.227577063 0.079190434 2.04E-09 8.689900359 0.512098759 RGDIVFVDR ddPTM_K562_Paclitaxel_30min_R1 2 RGDIVFVDR 9 1 O15269 O15269 SPTLC1 Serine palmitoyltransferase 1 0 ; 136.96 0.0010362 11819500 3578.9 3322.7 4022.2 3737.3 3508.2 3143.5 2993.6 4347.3 3407.8 4285.1 FALSE TRUE 3629.015642 3685.483623 3006.745864 3497.606306 3986.076234 3700.955588 3561.619972 3977.96973 3735.134416 3411.794268 1.063667782 1.080218599 0.881279945 1.025151586 1.168322566 1.084753446 1.04391405 1.165946542 1.094771291 1 11.73631494 -6.55240201 19.0840187 1.098237806 1.005179301 0.249401443 0.068333577 19.84149217 12824.55355 0.020261833 0.026160772 2.80E-07 6.55240201 -0.093058504 RGDS(ph)ES(ph)EEDEQDSEEVR ddPTM_K562_Paclitaxel_30min_R1 2 RGDSESEEDEQDSEEVR 17 1 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 2 RGDS(1)ES(1)EEDEQDSEEVR;RGDS(1)ES(1)EEDEQDSEEVR 153.17 1.77E-07 44999000 3964.5 4327.6 6345.7 5032.3 4424.6 3783.3 3707.8 4701 3660.2 5669.2 TRUE FALSE 4020.015232 4800.102003 4743.649552 4709.550802 5027.305429 4454.215135 4411.335694 4301.620707 4011.778564 4513.813928 0.89060278 1.063424873 1.050918276 1.043363966 1.113760006 0.986796356 0.977296753 0.95299026 0.888778011 1 12.14013123 -7.721012647 2.410923676 0.94576694 1.035957018 0.265771834 0.059718503 0.366358509 4.352770667 0.027592168 0.01880209 1.90E-08 7.721012647 0.090190078 RGDS(ph)ESEEDEQDSEEVR ddPTM_K562_Paclitaxel_30min_R1 1 RGDSESEEDEQDSEEVR 17 1 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 1 RGDS(0.939)ES(0.061)EEDEQDSEEVR 153.04 2.44E-07 3628800 179.34 169.09 290.28 151.2 212.83 224.5 180.96 266.22 151.35 128.73 TRUE FALSE 181.8513133 187.551818 216.9952239 141.5027087 241.8210492 264.3119229 215.2962153 243.6029493 165.8878437 102.4947553 1.774249938 1.829867464 2.117134903 1.380584873 2.359350471 2.578784856 2.100558361 2.376735751 1.618500802 1 6.679406279 -6.783656668 24.99983163 2.107893381 1.803750575 0.028303487 0.458591792 586.7352258 660215.9641 0.136479974 0.154872087 1.65E-07 6.783656668 -0.304142806 RGDSES(ph)EEDEQDSEEVR ddPTM_K562_Paclitaxel_30min_R1 1 RGDSESEEDEQDSEEVR 17 1 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 1 RGDS(0.005)ES(0.995)EEDEQDSEEVR 86.357 0.0057515 4885100 737.39 648.48 922.68 908.64 803.58 863.02 791.31 787.24 555.5 829.87 TRUE FALSE 747.715735 719.2832394 689.7380224 850.3638973 913.0412007 1016.06448 941.4569416 720.3590482 608.858257 660.7420385 1.131630336 1.088599177 1.04388397 1.286983191 1.381842153 1.537762728 1.424847954 1.09022736 0.921476494 1 9.367943326 -8.495032193 5.699181018 0.97183006 1.270213688 0.426958742 0.14668812 0.196184166 20.09737183 0.105056243 0.045569618 3.20E-09 8.495032193 0.298383628 RGDSQECS(ph)PRS(ph)CPELTSGPR ddPTM_K562_Paclitaxel_30min_R1 1 RGDSQECSPRSCPELTSGPR 20 2 Q13111;Q13111-3;Q13111-2 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 2 RGDS(0.009)QECS(0.991)PRS(0.972)CPELT(0.021)S(0.008)GPR 80.031 0.0089789 27826000 3098.2 2893.3 3653.5 3405 2557.4 2609.4 2661.4 3365.4 3384.6 3455.7 TRUE FALSE 3141.584359 3209.200279 2731.128739 3186.61854 2905.761177 3072.140452 3166.386757 3079.488264 3709.705953 2751.426443 1.141802052 1.166376912 0.992622843 1.158169628 1.056092626 1.116562814 1.15081643 1.11923336 1.348284619 1 11.42596404 -7.985708 1.989645811 1.174927076 1.102834831 0.055219777 0.09303726 0.828165153 6.496814364 0.051936186 0.027352734 1.03E-08 7.985708 -0.072092245 RGDTVATLSER ddPTM_K562_Paclitaxel_30min_R1 1 RGDTVATLSER 11 1 P22102 P22102 GART Trifunctional purine biosynthetic protein adenosine-3;Phosphoribosylamine--glycine ligase;Phosphoribosylformylglycinamidine cyclo-ligase;Phosphoribosylglycinamide formyltransferase 0 106.79 0.0091959 3640100 682.84 597.54 841.21 701.28 509.1 506.4 602.38 619.55 660.81 857.53 FALSE TRUE 692.4018667 662.781438 628.8361315 656.3030396 578.4480391 596.2029298 716.6784604 566.9153604 724.2837531 682.7649153 1.014114597 0.97073154 0.921014126 0.961243065 0.847214065 0.873218463 1.049670896 0.830322923 1.060809858 1 9.415245115 -10.44339587 8.708310429 0.999999202 0.942306873 0.036444516 0.076617568 0 0 0.070609235 0.017125255 3.60E-11 10.44339587 -0.057692329 RGEGDAPFSEPGTTSTQRPS(ph)SPETATK ddPTM_K562_Paclitaxel_30min_R1 2 RGEGDAPFSEPGTTSTQRPSSPETATK 27 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 RGEGDAPFS(0.002)EPGT(0.009)T(0.068)S(0.084)T(0.215)QRPS(0.344)S(0.273)PET(0.005)ATK;RGEGDAPFSEPGT(0.094)T(0.094)S(0.094)T(0.094)QRPS(0.302)S(0.302)PET(0.012)AT(0.005)K 66.884 0.0011705 492380000 3496.8 2747 6363.3 3729.8 2867.4 2688.2 2470 4155.7 2162.9 4488.7 TRUE FALSE 3545.765989 3046.92675 4756.806215 3490.587322 3257.988425 3164.914526 2938.669606 3802.647346 2370.656209 3573.900476 0.992127792 0.852549412 1.330984521 0.976688452 0.911605806 0.885563139 0.822258377 1.064004824 0.663324629 1 11.80328374 -6.626073595 4.344636388 0.891125647 1.053979242 0.200811447 0.148721502 0.352570455 11.81859469 0.043843711 0.057445155 2.37E-07 6.626073595 0.162853595 RGFS(ph)DSGGGPPAK ddPTM_K562_Paclitaxel_30min_R1 2 RGFSDSGGGPPAK 13 1 Q9H307;G3V5F0;G3V579 Q9H307 PNN Pinin 1 RGFS(1)DSGGGPPAK;RGFS(0.793)DS(0.207)GGGPPAK 147.51 8.12E-05 120345000 6397.8 5270.2 11196.1 5620.9 4637.2 4484 4104.2 6456.1 4988.4 7489.3 TRUE FALSE 6487.388939 5845.618259 8369.506083 5260.400632 5268.865148 5279.174442 4882.950525 5907.614007 5467.558109 5962.976549 1.087944735 0.980318841 1.403578568 0.882176978 0.88359649 0.885325374 0.818878036 0.99071562 0.916917594 1 12.54181695 -6.373279283 20.69946733 0.904626694 1.140316659 0.506286723 0.110899741 5.165343508 944.836171 0.030472549 0.045198064 4.23E-07 6.373279283 0.235689965 RGGADVNIR ddPTM_K562_Paclitaxel_30min_R1 1 RGGADVNIR 9 1 P08621;P08621-4;P08621-2 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 0 142.98 0.00095226 1330200 936.29 729.79 853.69 775.32 755.51 853.1 690 907.74 803.09 891.87 FALSE TRUE 949.4009487 809.4709402 638.1654012 725.5944454 858.4232529 1004.385307 820.923898 830.6218211 880.2303828 710.1064044 1.336984067 1.13992908 0.898689826 1.021810874 1.208865668 1.414415221 1.156057589 1.169714589 1.239575333 1 9.471891408 -6.816245413 10.53052455 1.215464587 1.087979178 0.096599199 0.140414018 0.96097747 179.651987 0.045244525 0.051370766 1.53E-07 6.816245413 -0.127485409 RGGDGYDGGYGGFDDYGGYNNYGYGNDGFDDR ddPTM_K562_Paclitaxel_30min_R1 2 RGGDGYDGGYGGFDDYGGYNNYGYGNDGFDDR 32 1 P31942-4;P31942-3;P31942;P31942-5 P31942-4 HNRNPH3 Heterogeneous nuclear ribonucleoprotein H3 0 ; 123.97 2.41E-20 139440000 1767.93 1620.85 2168.6 1916.5 1462.17 1585.46 1465.36 2343.2 1450.89 2391.5 FALSE TRUE 1792.686475 1797.819884 1621.110109 1793.584268 1661.342309 1866.61907 1743.40441 2144.130534 1590.254467 1904.110987 0.941482133 0.944178095 0.851373749 0.941953636 0.872502874 0.980310015 0.915600205 1.126053339 0.835168999 1 10.89490186 -7.538388093 2.124129739 0.982152027 0.911421677 0.123422473 0.074814003 0.601741861 5.468104418 0.031115782 0.023695482 2.89E-08 7.538388093 -0.07073035 RGGGSGGGEES(ph)EGEEVDED ddPTM_K562_Paclitaxel_30min_R1 2 RGGGSGGGEESEGEEVDED 19 1 Q96QR8 Q96QR8 PURB Transcriptional activator protein Pur-beta 1 RGGGS(0.001)GGGEES(0.999)EGEEVDED;RGGGS(0.001)GGGEES(0.999)EGEEVDED 126.25 4.33E-06 131379000 5921.2 5681.4 7998.8 6370.6 4962.9 5407.4 5252 6570.7 6617.4 7145.7 TRUE FALSE 6004.115068 6301.714465 5979.404012 5962.01823 5638.931003 6366.326466 6248.539583 6012.478022 7253.030837 5689.402418 1.05531559 1.107623262 1.050972242 1.047916423 0.991128872 1.118979815 1.098276958 1.056785508 1.274831749 1 12.47406141 -7.325688882 24.9964522 1.112605352 1.053631939 0.149764182 0.07015942 415.3657603 161597.3389 0.023886355 0.021065786 4.72E-08 7.325688882 -0.058973413 RGKGVFS(ph)MKGGSR ddPTM_K562_Paclitaxel_30min_R1 1 RGKGVFSMKGGSR 13 3 E5RJ39;B3KT61;Q86SE5-2;Q86SE5;Q86SE5-3 E5RJ39 RALYL RNA-binding Raly-like protein 1 RGKGVFS(0.999)MKGGS(0.001)R 54.772 0.028394 58432000 4445.8 4234.4 6562 5064.9 4134.4 3946.4 4098.7 5019.3 4839.1 5882.7 TRUE FALSE 4508.054916 4696.726112 4905.341942 4740.059984 4697.575276 4646.23863 4876.406928 4592.879136 5303.917177 4683.802511 0.962477582 1.002759211 1.047299055 1.012011068 1.002940509 0.991980046 1.041121379 0.980587701 1.132395562 1 12.19346453 -8.733279159 24.99978753 1.066198111 1.007388031 0.289596808 0.038118671 222.7030708 197709.8494 0.024022769 0.009075803 1.85E-09 8.733279159 -0.058810081 RGLLYDS(ph)DEEDEERPAR ddPTM_K562_Paclitaxel_30min_R1 3 RGLLYDSDEEDEERPAR 17 2 P49736 P49736 MCM2 DNA replication licensing factor MCM2 1 RGLLYDS(1)DEEDEERPAR;RGLLYDS(1)DEEDEERPAR;RGLLYDS(1)DEEDEERPAR 146.18 1.22E-07 1441860000 2177.23 1707.27 2694.06 2750.93 1974.92 1884.25 1679.12 2077.79 2422.99 2350.94 TRUE FALSE 2207.717937 1893.675512 2013.911233 2574.497663 2243.93754 2218.395281 1997.724254 1901.26877 2655.729016 1871.817138 1.179451717 1.011677623 1.075912381 1.375400198 1.198801686 1.185155984 1.067264646 1.015734247 1.418797255 1 10.87022379 -10.74868557 12.67588891 0.999886304 1.162192368 0.127485319 0.131920163 0 0 0.128701787 0.031214768 1.78E-11 10.74868557 0.162306064 RGNDPLTSS(ph)PGR ddPTM_K562_Paclitaxel_30min_R1 2 RGNDPLTSSPGR 12 1 P49736;F8WDM3;C9JZ21;C9J013 P49736 MCM2 DNA replication licensing factor MCM2 1 RGNDPLTS(0.014)S(0.986)PGR;RGNDPLT(0.005)S(0.094)S(0.901)PGR 100.68 0.005734 398149000 1725.83 1415.23 2261.2 1982.36 1768.6 1535.58 1516.11 1805.57 1737.33 2225.1 TRUE FALSE 1749.996945 1569.749597 1690.332094 1855.220302 2009.513263 1807.893552 1803.783958 1652.175558 1904.208309 1771.623399 0.98779286 0.886051516 0.954114794 1.047186611 1.134277897 1.020472835 1.018153158 0.932577183 1.07483809 1 10.79085624 -6.172493064 4.874003353 1.032704306 0.93392057 0.368993456 0.05392492 0.24059325 9.660015598 0.015467691 0.027474992 6.72E-07 6.172493064 -0.098783736 RGPGLYYVDSEGNR ddPTM_K562_Paclitaxel_30min_R1 2 RGPGLYYVDSEGNR 14 1 P28074-3;P28074 P28074-3 PSMB5 Proteasome subunit beta type-5 0 ; 145.49 1.86E-05 34279000 3082.3 2937.6 3212.3 3104.1 2526.6 2465.73 2831.76 3156.2 2865.5 3849.8 FALSE TRUE 3125.46171 3258.337102 2401.315136 2905.016919 2870.765696 2902.992595 3369.071677 2888.06111 3140.744078 3065.208647 1.019657084 1.063006626 0.78341001 0.94773872 0.93656453 0.9470783 1.099132903 0.942207022 1.024642835 1 11.58176957 -7.601179045 24.99997903 1.013312558 0.946437758 0.154323388 0.076389349 68.68256327 21925.4587 0.029984097 0.023225576 2.51E-08 7.601179045 -0.066874799 RGPGVPS(ph)PQPDVTMLSR ddPTM_K562_Paclitaxel_30min_R1 1 RGPGVPSPQPDVTMLSR 17 1 H0YHA4;F8VNQ1;A0A087WSV2;F8W036;F8VP73;P78537 H0YHA4 BLOC1S1 Biogenesis of lysosome-related organelles complex 1 subunit 1 1 RGPGVPS(0.912)PQPDVT(0.007)MLS(0.082)R 66.906 0.023059 12183000 889.16 917.67 1259.1 1071.3 724.2 976.5 1366 1153.6 962.82 1265 TRUE FALSE 901.6109833 1017.864314 941.2246326 1002.591613 822.8483008 1149.668564 1625.191369 1055.594479 1055.303163 1007.192306 0.895172628 1.0105958 0.934503399 0.995432161 0.816972386 1.141458843 1.613585966 1.048056537 1.0477673 1 9.976123452 -7.434002157 6.830554879 1.208066228 0.940871237 0.32969151 0.168713618 0.288639153 18.89995361 0.060986717 0.053501738 3.68E-08 7.434002157 -0.267194992 RGPNYTSGYGTNSELS(ph)NPSETESER ddPTM_K562_Paclitaxel_30min_R1 2 RGPNYTSGYGTNSELSNPSETESER 25 1 E7EU85;E9PFF5;B4DXZ6;P51114-3;P51114-2;P51114 E7EU85 FXR1 Fragile X mental retardation syndrome-related protein 1 1 RGPNYTSGYGTNSELS(0.606)NPS(0.358)ET(0.033)ES(0.003)ER;RGPNYTSGYGT(0.003)NS(0.009)ELS(0.913)NPS(0.061)ET(0.009)ES(0.005)ER 136.8 1.05E-14 43646000 1078.54 913.54 1489.24 1113.77 872.85 872.37 747.67 1072.08 781.55 1329.47 TRUE FALSE 1093.642888 1013.283387 1113.262943 1042.337777 991.7469475 1027.072571 889.5364794 981.0001123 856.6213696 1058.523284 1.033177922 0.957261311 1.051713231 0.984709352 0.936915571 0.970288123 0.840356082 0.926762903 0.809260771 1 10.04783729 -7.134607961 1.25530937 0.891196386 1.008883637 0.409437675 0.056452098 0.408642068 1.326032222 0.024768266 0.024955298 7.33E-08 7.134607961 0.117687251 RGPS(ph)PPASPTR ddPTM_K562_Paclitaxel_30min_R1 1 RGPSPPASPTR 11 1 Q6P5Z2 Q6P5Z2 PKN3 Serine/threonine-protein kinase N3 1 RGPS(1)PPASPTR 87.083 0.013617 10070000 425.44 631.34 746.21 657.86 523.13 471.67 698.12 788.25 612.99 599.65 TRUE FALSE 431.3974726 700.2718363 557.8200565 615.6678041 594.3891627 555.3140519 830.5846256 721.2832424 671.8704284 477.4410008 0.903561847 1.466719102 1.168353902 1.289515988 1.244947882 1.163105077 1.739659192 1.510727485 1.407232364 1 8.899178655 -7.697265115 24.99999493 1.456982502 1.22173355 0.169805227 0.216049792 90.85476912 35392.95292 0.077768522 0.060239211 2.01E-08 7.697265115 -0.235248952 RGPSASSVAVMTS(ph)STSDHHLDAAAAR ddPTM_K562_Paclitaxel_30min_R1 1 RGPSASSVAVMTSSTSDHHLDAAAAR 26 1 C9JMQ4;C9JSC3;Q9NZQ3-5;Q9NZQ3-4;Q9NZQ3-3;Q9NZQ3-2;Q9NZQ3 C9JMQ4 NCKIPSD NCK-interacting protein with SH3 domain 1 RGPSASSVAVMT(0.064)S(0.234)S(0.234)T(0.234)S(0.234)DHHLDAAAAR 93.407 1.69E-05 26760000 939.09 1029.4 1088.3 1158.5 945.66 992.9 989.25 960.73 930.44 1248.1 TRUE FALSE 952.2401573 1141.793373 813.5452051 1084.198995 1074.474902 1168.976874 1176.955023 879.1099898 1019.812919 993.7365349 0.958242073 1.148990032 0.818672934 1.09103264 1.081247257 1.176344869 1.184373304 0.88465097 1.026240742 1 9.956719597 -2.024621488 18.83665889 1.041519346 0.005184243 0 0.117186007 0 0 0.027069382 0 0.00944884 2.024621488 -1.036335103 RGPSASSVAVMTSSTS(ph)DHHLDAAAAR ddPTM_K562_Paclitaxel_30min_R1 1 RGPSASSVAVMTSSTSDHHLDAAAAR 26 1 C9JMQ4;C9JSC3;Q9NZQ3-5;Q9NZQ3-4;Q9NZQ3-3;Q9NZQ3-2;Q9NZQ3 C9JMQ4 NCKIPSD NCK-interacting protein with SH3 domain 1 RGPSASSVAVMT(0.012)S(0.038)S(0.12)T(0.396)S(0.435)DHHLDAAAAR 94.802 1.29E-05 29870000 1253.5 1212.9 1209.2 1426.4 1319.2 1132 1118.3 1284.2 1265.7 1493.7 TRUE FALSE 1271.052867 1345.328524 903.9225048 1334.917088 1498.897374 1332.744306 1330.491587 1175.099194 1387.27614 1189.28312 1.068755493 1.131209635 0.760056617 1.122455255 1.260336878 1.120628287 1.118734105 0.98807355 1.166480981 1 10.21587649 -4.847707029 14.35798134 1.07571082 0.001420729 4.17E-05 0.128261351 21489988.5 7473754.008 0.033028582 755519776.5 1.42E-05 4.847707029 -1.074290092 RGQMPENPYS(ph)EVGK ddPTM_K562_Paclitaxel_30min_R1 3 RGQMPENPYSEVGK 14 1 A0A590UJF3;H7C1X5;E7EUA2;A6NHU9;A0A0A0MSQ6;A0A590UJ45;Q9UPX8-4;Q9UPX8;Q9UPX8-3 A0A590UJF3 SHANK2 SH3 and multiple ankyrin repeat domains protein 2 1 RGQMPENPYS(1)EVGK;RGQMPENPYS(1)EVGK;RGQMPENPYS(1)EVGK 116.71 0.0038572 146007000 0 0 0 0 0 62.794 0 0 0 0 TRUE FALSE 0 0 0 0 0 73.92963423 0 0 0 0 0 RGQS(ph)SPPPAPPICLR ddPTM_K562_Paclitaxel_30min_R1 2 RGQSSPPPAPPICLR 15 1 O43379;O43379-4;H7C3R4;O43379-3;O43379-2 O43379 WDR62 WD repeat-containing protein 62 1 RGQS(0.617)S(0.383)PPPAPPICLR;RGQS(0.614)S(0.386)PPPAPPICLR 76.761 0.020156 193341000 2097.71 2469.9 2886.1 2727.3 2272.9 2233.83 2255.76 2629.29 2568.66 2794.53 TRUE FALSE 2127.084412 2739.572035 2157.46836 2552.383185 2582.507461 2629.968386 2683.778684 2405.915403 2815.39127 2225.003252 0.955991597 1.231266531 0.969647284 1.147136833 1.160675814 1.182006536 1.206190904 1.081308713 1.265342542 1 11.11959173 -6.486747414 24.45825109 1.157449675 1.068230539 0.16395124 0.097012806 816.4669283 552687.2029 0.025215281 0.037384472 3.26E-07 6.486747414 -0.089219136 RGQY(ph)VMLSECLER ddPTM_K562_Paclitaxel_30min_R1 1 RGQYVMLSECLER 13 1 H7C1P2;G5E9G4;Q9ULT0;Q9ULT0-4 H7C1P2 TTC7A Tetratricopeptide repeat protein 7A 1 RGQY(1)VMLSECLER 59.426 0.025374 0 235.49 151.44 193.17 194.04 139.48 0 151.09 139.15 274.01 328.16 TRUE FALSE 238.7875865 167.9747313 144.4018444 181.5951429 158.4795374 0 179.7585388 127.328339 300.3298848 261.2808119 0.913911683 0.642889656 0.552669151 0.695019055 0.606548702 0 0.68798982 0.487323727 1.149452509 1 8.029457369 -8.76162715 24.99999999 1.074726453 0.5648057 0.44640968 0.223196963 4.543450575 604158.2492 0.180729853 0.057912645 1.73E-09 8.76162715 -0.509920753 RGRS(ph)PQPPAEEDEDDFDDTLVAIDTYNCDLHFK ddPTM_K562_Paclitaxel_30min_R1 2 RGRSPQPPAEEDEDDFDDTLVAIDTYNCDLHFK 33 2 B7Z4B8;M0R0K8;M0QYI8;M0QYZ0;M0R3F1;A0A0A0MRA5;Q9BUJ2-3;Q9BUJ2-4;Q9BUJ2-2;Q9BUJ2 B7Z4B8 HNRNPUL1 Heterogeneous nuclear ribonucleoprotein U-like protein 1 1 RGRS(0.987)PQPPAEEDEDDFDDT(0.009)LVAIDT(0.002)Y(0.002)NCDLHFK;RGRS(0.998)PQPPAEEDEDDFDDT(0.002)LVAIDTYNCDLHFK 72.228 2.02E-05 358950000 757.77 858.63 1332 924.04 719.92 618.21 964.22 982 1246.68 1231.37 TRUE FALSE 768.3811179 952.3781271 995.720126 864.7762103 817.9852923 727.8408634 1147.175711 898.5729705 1366.429184 980.4161181 0.783729586 0.971401948 1.015609707 0.882050177 0.834324607 0.742379537 1.170090628 0.91652203 1.393723705 1 9.937250392 -7.774312954 24.99516951 1.113127632 0.881448769 0.436102912 0.138069449 238.7588055 463566.746 0.056263888 0.038205587 1.68E-08 7.774312954 -0.231678863 RGS(ph)DASDFDLLETQSACSDTSESSAAGGQGNSR ddPTM_K562_Paclitaxel_30min_R1 2 RGSDASDFDLLETQSACSDTSESSAAGGQGNSR 33 1 H3BPE1;H3BQK9;Q9UPN3;H0Y390;A0A590UJG2;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3-5;H0Y6T5;H0Y4F5;H0Y314 H3BPE1 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 RGS(0.755)DAS(0.243)DFDLLET(0.002)QSACSDTSESSAAGGQGNSR;RGS(0.887)DAS(0.113)DFDLLETQSACSDTSESSAAGGQGNSR 97.089 3.42E-11 54278000 381.78 437.72 690.41 685.69 548.82 548.72 666.82 821.95 456.52 433.5 TRUE FALSE 387.1260979 485.5117499 516.1074566 641.7129124 623.5785756 646.0277876 793.345614 752.120217 500.3707858 345.152462 1.121608971 1.406658805 1.49530284 1.859215805 1.806675728 1.871717165 2.298536737 2.179095616 1.44970945 1 8.431089965 -5.831891532 1.277745944 1.865883611 1.116519614 0.249286425 0.351197448 0.729175438 1.940993135 0.10941506 0.556144645 1.47E-06 5.831891532 -0.749363997 RGS(ph)FSSENYWR ddPTM_K562_Paclitaxel_30min_R1 3 RGSFSSENYWR 11 1 Q6P6C2-3;Q6P6C2;K7ER58;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 RGS(0.846)FS(0.051)S(0.103)ENYWR;RGS(0.744)FS(0.128)S(0.128)ENYWR;RGS(0.91)FS(0.077)S(0.014)ENYWR 105.95 0.012258 118229800 2192.91 1896.9 2675.57 2460.79 1979.49 1774.16 2004.85 2020.62 1722.9 2525.19 TRUE FALSE 2223.617506 2104.009957 2000.089262 2302.965943 2249.130051 2088.782366 2385.259821 1848.955719 1888.392243 2010.554892 1.105972045 1.046482225 0.994794656 1.145437985 1.118661351 1.0389084 1.186368913 0.91962459 0.939239337 1 10.97337801 -8.281338526 24.99276714 0.947073955 1.086698517 0.563947305 0.055444742 622.0114966 781224.2036 0.030266656 0.014569413 5.23E-09 8.281338526 0.139624562 RGS(ph)GDTSSLIDPDTSLSELR ddPTM_K562_Paclitaxel_30min_R1 3 RGSGDTSSLIDPDTSLSELR 20 1 C9JSU1;Q9Y608-4;Q9Y608;Q9Y608-2;Q9Y608-5 C9JSU1;Q9Y608-2 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 RGS(0.714)GDT(0.222)S(0.052)S(0.013)LIDPDTSLSELR;RGS(0.984)GDT(0.01)S(0.004)S(0.002)LIDPDTSLSELR;RGS(0.998)GDT(0.001)S(0.001)SLIDPDTSLSELR 121.35 6.98E-06 224523000 4994.8 4547.5 6718.2 6162.3 4847.4 4792.8 4300.26 5797.1 3189.58 6692.1 TRUE FALSE 5064.74261 5044.011429 5022.10732 5767.077659 5507.697947 5642.735786 5116.211886 5304.600171 3495.95341 5328.246347 0.95054588 0.946655072 0.942544131 1.082359426 1.033679299 1.059023067 0.960205582 0.995562109 0.656117075 1 12.37944507 -8.596108977 24.99993137 0.827314776 0.998038604 0.359615286 0.089796996 42.29680052 14437.84994 0.057512986 0.021737867 2.53E-09 8.596108977 0.170723828 RGS(ph)GDTSSLIDPDTSLSELRDIYDLK ddPTM_K562_Paclitaxel_30min_R1 1 RGSGDTSSLIDPDTSLSELRDIYDLK 26 2 C9JSU1;Q9Y608-4;Q9Y608 C9JSU1 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 RGS(0.894)GDT(0.078)S(0.022)S(0.006)LIDPDTSLSELRDIYDLK 65.765 0.00094493 4220900 2547.5 2407 5581 3423.1 2199.8 2022.3 1826.6 3364.7 1889.2 4383.4 TRUE FALSE 2583.17286 2669.8044 4172.007525 3203.557687 2499.450003 2380.92651 2173.187815 3078.847733 2070.666101 3490.060674 0.740151276 0.764973635 1.195396847 0.917908881 0.716162335 0.68220204 0.622679093 0.882175991 0.593303754 1 11.7690364 -6.758505422 24.78184272 0.733831325 0.915404495 0.177069963 0.161145161 107.6259083 909059.195 0.048615675 0.060023745 1.74E-07 6.758505422 0.18157317 RGS(ph)LEMSSDGEPLSR ddPTM_K562_Paclitaxel_30min_R1 2 RGSLEMSSDGEPLSR 15 1 Q6ZN18-2;Q6ZN18 Q6ZN18-2 AEBP2 Zinc finger protein AEBP2 1 RGS(0.685)LEMS(0.138)S(0.138)DGEPLS(0.038)R;RGS(0.886)LEMS(0.057)S(0.057)DGEPLSR 142.4 6.80E-06 52499000 2000.75 1802.46 2671.1 2150.45 1876.97 1893.13 1437.21 2344.6 1987.64 2506.3 TRUE FALSE 2028.766673 1999.258678 1996.747769 2012.529762 2132.645091 2228.850025 1709.913095 2145.411595 2178.561703 1995.514684 1.016663365 1.001876205 1.000617928 1.008526661 1.068719317 1.116929904 0.856878232 1.075116917 1.091729227 1 10.96254518 -6.561428824 24.92058444 1.034286009 1.005707698 0.039395881 0.067669945 645.3946583 417210.7705 0.020458046 0.026411262 2.75E-07 6.561428824 -0.028578312 RGS(ph)LSNAGDPEIVK ddPTM_K562_Paclitaxel_30min_R1 2 RGSLSNAGDPEIVK 14 1 F5H7V1;O43847;O43847-2 F5H7V1 NRD1 Nardilysin 1 RGS(0.967)LS(0.033)NAGDPEIVK;RGS(1)LSNAGDPEIVK 135.57 5.89E-05 35728000 7194.2 5702.4 14845 8370.4 6521.4 5536.3 5159.5 9502.7 4272.2 11616.3 TRUE FALSE 7294.940996 6325.007316 11097.19615 7833.560009 7409.725088 6518.085071 6138.488191 8695.386321 4682.563899 9248.891684 0.788736775 0.683866514 1.199840643 0.846972835 0.801147353 0.704742286 0.663699868 0.940154412 0.506283786 1 13.17506478 -6.806818019 3.479960738 0.754166063 0.890549731 0.086124483 0.178185903 0.553545128 13.77222241 0.055961696 0.067243272 1.56E-07 6.806818019 0.136383668 RGS(ph)NVALMLDVR ddPTM_K562_Paclitaxel_30min_R1 2 RGSNVALMLDVR 12 1 C9JBA9;F8WF66;E9PE54;C9IYI6;E7EUM0;H7C5I3;J3KR55;P35236;P35236-2;P35236-3 C9JBA9 PTPN7 Tyrosine-protein phosphatase non-receptor type 7 1 RGS(1)NVALMLDVR;RGS(1)NVALMLDVR 112.67 0.003039 30559000 4159.5 4054 5428.1 4280.7 4544.4 4772.8 4970.5 7179.9 5281.3 8559.8 TRUE FALSE 4217.745833 4496.62943 4057.709021 4006.155062 5163.424217 5619.189067 5913.626427 6569.922679 5788.592462 6815.308061 0.618863563 0.659783738 0.5953816 0.587817165 0.757621544 0.824495242 0.867697597 0.963994968 0.84935155 1 12.73456315 -7.247541335 1.292258177 0.92559153 0.613679472 0.89509077 0.046725205 0.13032927 0.443077598 0.022126908 0.020186818 5.66E-08 7.247541335 -0.311912057 RGS(ph)PTTGFIEQK ddPTM_K562_Paclitaxel_30min_R1 1 RGSPTTGFIEQK 12 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 RGS(0.996)PT(0.004)T(0.001)GFIEQK 99.238 0.0060968 18494000 3841.5 3000.4 7244.2 4199.5 3456.2 3080.6 2634.6 4101.2 3599.8 5311.7 TRUE FALSE 3895.292852 3327.993819 5415.312115 3930.162866 3926.992954 3626.901156 3134.501596 3752.777461 3945.576874 4229.172624 0.92105317 0.786913686 1.280466085 0.929298285 0.92854875 0.857591184 0.741161895 0.887354997 0.932942971 1 12.04615973 -6.868907787 2.753049981 0.870198096 0.988630851 0.102058851 0.130923814 0.5675512 8.713887793 0.044605181 0.052522236 1.35E-07 6.868907787 0.118432755 RGS(ph)PVPPVPERR ddPTM_K562_Paclitaxel_30min_R1 2 RGSPVPPVPERR 12 2 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 RGS(1)PVPPVPERR;RGS(1)PVPPVPERR 79.337 0.016378 14134000 1111.65 690.15 1350.34 1139.07 987.15 971.94 919.26 854.95 1141.3 1162.92 TRUE FALSE 1127.21653 765.5029109 1009.429966 1066.015148 1121.616543 1144.299912 1093.684786 782.3166611 1250.926964 925.9162657 1.217406553 0.826751769 1.090195738 1.151308372 1.211358504 1.235856799 1.181191893 0.844910809 1.351015217 1 9.85473792 -4.939168046 22.16766721 1.101080813 3.81266592 0.047261834 0.159043656 3201.150164 1305836.854 0.037836007 50641.40843 1.15E-05 4.939168046 2.711585107 RGS(ph)SGSVDETLFALPAASEPVIR ddPTM_K562_Paclitaxel_30min_R1 4 RGSSGSVDETLFALPAASEPVIR 23 1 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 1 RGS(0.333)S(0.333)GS(0.333)VDETLFALPAASEPVIR;RGS(0.333)S(0.333)GS(0.333)VDET(0.001)LFALPAASEPVIR;RGS(0.637)S(0.181)GS(0.181)VDET(0.001)LFALPAASEPVIR;RGS(0.333)S(0.333)GS(0.333)VDETLFALPAASEPVIR 144.18 1.46E-17 49765500 4559.52 4626.05 6479.4 5128.97 4901.76 4449.8 4654.3 6344.21 3535.59 7272.62 TRUE FALSE 4623.367347 5131.137783 4843.595334 4800.020821 5569.462699 5238.909552 5537.429128 5805.229761 3875.199217 5790.456052 0.798446151 0.886137074 0.836479077 0.828953847 0.961834897 0.90474904 0.956302764 1.00255139 0.669239034 1 12.49946126 -6.745497292 24.72260579 0.917381731 0.840904592 0.149483018 0.091277639 428.8663901 665072.0697 0.026049742 0.033514371 1.80E-07 6.745497292 -0.076477139 RGSDASDFDLLET(ph)QSACSDTSESSAAGGQGNSR ddPTM_K562_Paclitaxel_30min_R1 1 RGSDASDFDLLETQSACSDTSESSAAGGQGNSR 33 1 H3BPE1;H3BQK9;Q9UPN3;H0Y390;A0A590UJG2;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3-5;H0Y6T5;H0Y4F5;H0Y314 H3BPE1 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 RGS(0.269)DAS(0.269)DFDLLET(0.329)QS(0.057)ACS(0.063)DT(0.007)S(0.004)ES(0.001)S(0.001)AAGGQGNSR 45.631 0.022355 22996000 154.64 0 321.39 0 0 257.9 99.736 311.46 215.46 392.16 TRUE FALSE 156.8054371 0 240.2511196 0 0 303.6349439 118.6603853 284.9995289 236.1558957 312.2375767 0.502199123 0 0.769449732 0 0 0.972448438 0.380032367 0.912764991 0.756334001 1 8.286500361 -7.265121964 24.96394256 0.77234605 0.254688682 0.488460043 0.280462234 293.2637782 1988003.448 0.094740808 0.086780318 5.43E-08 7.265121964 -0.517657368 RGSDSS(ph)EDIY(ph)LDT(ph)PSSGTR ddPTM_K562_Paclitaxel_30min_R1 1 RGSDSSEDIYLDTPSSGTR 19 1 Q16821 Q16821 PPP1R3A Protein phosphatase 1 regulatory subunit 3A 3 RGS(0.093)DS(0.424)S(0.483)EDIY(0.677)LDT(0.416)PS(0.36)S(0.329)GT(0.218)R 54.834 0.022008 15472000 0 0 233.04 156.44 42.56 107.49 0 0 69.253 114.71 TRUE FALSE 0 0 174.2061698 146.4066386 48.35739255 126.5518423 0 0 75.90506008 91.33203903 0 0 1.907393853 1.60301511 0.529468006 1.385623748 0 0 0.831089078 1 6.513049137 -7.767040117 24.98954304 0.37443902 0.923471774 0.092784307 0.662160966 312.2771277 1393309.583 0.289312341 0.201199981 1.71E-08 7.767040117 0.549032755 RGSGDT(ph)SSLIDPDTSLSELRESLSEVEEK ddPTM_K562_Paclitaxel_30min_R1 1 RGSGDTSSLIDPDTSLSELRESLSEVEEK 29 2 Q9Y608-2;Q9Y608-5 Q9Y608-2 LRRFIP2 Leucine-rich repeat flightless-interacting protein 2 1 RGS(0.17)GDT(0.765)S(0.039)S(0.025)LIDPDTSLSELRESLSEVEEK 102.27 2.10E-07 12502000 2004.6 1505.9 3500.8 2266.8 1362.2 1409 902.76 1598.8 2118.8 2422 TRUE FALSE 2032.670585 1670.319255 2616.979743 2121.417594 1547.754702 1658.866367 1074.053997 1462.971961 2322.320207 1928.395071 1.05407373 0.866170672 1.357076557 1.100094906 0.80261287 0.860231595 0.556967819 0.758647428 1.204276158 1 10.91318493 -6.757374406 24.96883432 0.836202709 1.096821112 0.249093769 0.192554102 136.6904225 839606.0671 0.059262443 0.073715047 1.75E-07 6.757374406 0.260618403 RGSLPDTQPSQGPS(ph)TPKGER ddPTM_K562_Paclitaxel_30min_R1 1 RGSLPDTQPSQGPSTPKGER 20 2 A0A494BYR6;Q86Y91-6;Q86Y91 A0A494BYR6 KIF18B Kinesin-like protein KIF18B 1 RGSLPDTQPS(0.032)QGPS(0.484)T(0.484)PKGER 69.422 0.0065597 8412200 1328 1179.9 2365.4 1252.6 1138.5 1127.1 1244.7 1569.2 1046 1880.1 TRUE FALSE 1346.596097 1308.725472 1768.225515 1172.263842 1293.582975 1326.97536 1480.875327 1435.886665 1146.472974 1496.934588 0.899569098 0.874270314 1.181230983 0.783109597 0.864154643 0.88646182 0.989271902 0.959218043 0.765880475 1 10.54779547 RGT(ph)GQSDDSDIWDDTALIK ddPTM_K562_Paclitaxel_30min_R1 1 RGTGQSDDSDIWDDTALIK 19 1 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 1 RGT(0.499)GQS(0.499)DDS(0.003)DIWDDTALIK 134.34 2.82E-09 24893000 3368.3 3086.9 6907.4 3843.6 3249.1 3030.6 2316.3 3970.1 3375.5 4040.7 TRUE FALSE 3415.466592 3423.938181 5163.54144 3597.088699 3691.682428 3568.034358 2755.805833 3632.815224 3699.731857 3217.203122 1.061626034 1.06425925 1.604978375 1.118079451 1.147481924 1.109048519 0.856584346 1.12918429 1.14998392 1 11.65159131 -6.991765429 2.009183879 1.045210012 1.230674985 0.189221852 0.162875888 0.569987744 4.639468947 0.062184441 0.068615722 1.02E-07 6.991765429 0.185464973 RGT(ph)SLMEDDEEPIVEDVMMSSEGR ddPTM_K562_Paclitaxel_30min_R1 4 RGTSLMEDDEEPIVEDVMMSSEGR 24 1 Q8N3U4;Q8N3U4-2 Q8N3U4 STAG2 Cohesin subunit SA-2 1 RGT(0.5)S(0.5)LMEDDEEPIVEDVMMSSEGR;RGT(0.5)S(0.5)LMEDDEEPIVEDVMMSSEGR;RGT(0.5)S(0.5)LMEDDEEPIVEDVMMSSEGR;RGT(0.5)S(0.5)LMEDDEEPIVEDVMMSSEGR 105.75 5.28E-06 36824000 1904.11 2216.27 2772.86 2405.45 2366.39 1885.92 2233.74 2561.23 1980.62 2978.64 TRUE FALSE 1930.773415 2458.249854 2072.817199 2251.175203 2688.732381 2220.361432 2657.580504 2343.637525 2170.867401 2371.591533 0.814125615 1.036540154 0.87401948 0.949225519 1.133724903 0.936232653 1.120589472 0.988212975 0.91536311 1 11.21163984 -6.537613589 24.98781097 1.018652503 0.919486716 0.253454826 0.083209827 329.6064717 558954.0619 0.023486795 0.030333435 2.90E-07 6.537613589 -0.099165787 RGTGQS(ph)DDSDIWDDTALIK ddPTM_K562_Paclitaxel_30min_R1 3 RGTGQSDDSDIWDDTALIK 19 1 B4DP61;A0A1W2PRV5;E7EQZ4;Q16637-4;Q16637-2;Q16637-3;Q16637 B4DP61 SMN2;SMN1 Survival motor neuron protein 1 RGT(0.061)GQS(0.938)DDS(0.001)DIWDDTALIK;RGT(0.036)GQS(0.949)DDS(0.015)DIWDDTALIK;RGT(0.071)GQS(0.927)DDS(0.003)DIWDDTALIK 128.8 4.95E-07 222784000 10430.9 8368 19839.9 13085.5 8740.3 7685.2 6565.1 10890.1 10062 13528.2 TRUE FALSE 10576.96478 9281.646539 14831.07187 12246.2546 9930.876835 9048.062314 7810.793453 9964.918031 11028.50006 10771.14541 0.981972146 0.861713976 1.376926158 1.136950076 0.92198893 0.840027868 0.725159039 0.925149336 1.023892969 1 13.39488406 -6.842968654 5.547450085 0.887113674 1.09316485 0.273907914 0.144961955 0.275137146 14.07021791 0.048375288 0.055515353 1.44E-07 6.842968654 0.206051175 RHDS(ph)LHDPAAPSR ddPTM_K562_Paclitaxel_30min_R1 1 RHDSLHDPAAPSR 13 1 A0A3B3ISP1;Q92625 A0A3B3ISP1 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 RHDS(1)LHDPAAPSR 84.859 0.0099781 3096800 1153.7 1418.9 1170.9 894.95 937.75 1016.7 1215.8 1488 865.8 1688.3 TRUE FALSE 1169.855359 1573.8203 875.2918135 837.5519126 1065.487426 1196.99747 1446.491703 1361.585112 948.9639585 1344.223533 0.87028335 1.17080252 0.651150491 0.623074877 0.792641551 0.890475014 1.076079735 1.012915693 0.70595696 1 10.39255735 -7.521888277 24.95467895 0.954594832 0.822600131 0.115285022 0.166031244 88.86057791 2238958.033 0.067509076 0.052982106 3.01E-08 7.521888277 -0.131994701 RHGAPAAPS(ph)PPPR ddPTM_K562_Paclitaxel_30min_R1 4 RHGAPAAPSPPPR 13 1 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 RHGAPAAPS(1)PPPR;RHGAPAAPS(1)PPPR;RHGAPAAPS(1)PPPR;RHGAPAAPS(1)PPPR 115.04 0.0019984 98917000 3542.03 3243.9 4735 4090.31 2736.56 2934.4 2688.43 3691.24 2993.11 4791.57 TRUE FALSE 3591.629348 3598.079972 3539.590688 3827.975824 3109.325802 3454.774639 3198.545558 3377.646122 3280.611589 3815.045404 0.941438166 0.943129004 0.927797788 1.003389323 0.815016723 0.905565799 0.838403012 0.885348866 0.859914167 1 11.89748451 -6.756729848 24.99995473 0.87710317 0.951299251 0.312841907 0.050059306 130.2747748 691541.9961 0.013864803 0.017315098 1.75E-07 6.756729848 0.074196081 RHLS(ph)EGTNSYATR ddPTM_K562_Paclitaxel_30min_R1 1 RHLSEGTNSYATR 13 1 Q14149 Q14149 MORC3 MORC family CW-type zinc finger protein 3 1 RHLS(0.99)EGT(0.007)NS(0.002)YATR 74.726 0.026434 20484000 274.53 307.2 405.76 321.83 112.47 284.28 58.612 280.69 173.32 417.82 TRUE FALSE 278.374267 340.7411349 303.3208696 301.1892643 127.7903181 334.6930665 69.73332102 256.8436325 189.9681604 332.6680547 0.836792902 1.024267675 0.911782377 0.905374772 0.38413763 1.006087185 0.209618327 0.772071826 0.571044192 1 8.377939524 -6.606130485 12.38802478 0.640879238 0.929997383 0.228141485 0.235423646 0.810762382 116.9856082 0.064580621 0.083373102 2.48E-07 6.606130485 0.289118145 RHLSQDHT(ph)VPGRPAASELHSR ddPTM_K562_Paclitaxel_30min_R1 2 RHLSQDHTVPGRPAASELHSR 21 2 Q8TEK3-1;Q8TEK3 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 1 RHLS(0.006)QDHT(0.994)VPGRPAASELHSR;RHLS(0.074)QDHT(0.853)VPGRPAAS(0.07)ELHS(0.002)R 93.215 0.00021277 9992700 977.11 716.07 771.24 745.2 745.87 683.77 684.28 649.62 968.6 952.04 TRUE FALSE 990.7925546 794.2529442 576.5309234 697.4062074 847.4701217 805.0270089 814.1185578 594.4307262 1061.638358 758.0137254 1.30709052 1.04780813 0.760581114 0.9200443 1.118014217 1.062021678 1.074015589 0.784195202 1.400552948 1 9.566080161 -6.770732525 24.93451654 1.061831555 0.99392581 0.022405936 0.189690783 927.4708019 2488499.989 0.059093004 0.067922291 1.70E-07 6.770732525 -0.067905745 RHQDGLPYIDDS(ph)PSSSPHLSSK ddPTM_K562_Paclitaxel_30min_R1 1 RHQDGLPYIDDSPSSSPHLSSK 22 1 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 RHQDGLPYIDDS(0.973)PS(0.019)S(0.005)S(0.002)PHLSSK 78.978 0.00071026 27744000 2760.2 2408.7 5125.6 3418.4 3258.9 2502.4 2464.4 3501.6 3633.8 3741 TRUE FALSE 2798.851316 2671.690012 3831.578887 3199.159124 3702.817354 2946.165505 2932.007035 3204.117224 3982.842726 2978.582147 0.939658931 0.89696704 1.286376772 1.074054354 1.243147636 0.989116754 0.984363328 1.075718938 1.337160612 1 11.54041003 -5.729441569 24.99959919 1.11915063 0.918312631 0.317215869 0.12040467 237.1370483 185269.8462 0.030587113 0.080911526 1.86E-06 5.729441569 -0.200837999 RHS(ph)ASNLHALAHPAPSPGSCSPK ddPTM_K562_Paclitaxel_30min_R1 1 RHSASNLHALAHPAPSPGSCSPK 23 1 P47974 P47974 ZFP36L2 "Zinc finger protein 36, C3H1 type-like 2" 1 RHS(0.803)AS(0.195)NLHALAHPAPSPGSCS(0.001)PK 42.347 0.023744 31662000 2186.6 1892.6 3816.5 2235.5 1952.4 1653.5 1589.6 2169.5 1971.8 3340.4 TRUE FALSE 2217.219146 2099.240468 2852.977373 2092.125036 2218.349934 1946.725009 1891.218302 1985.187433 2161.2002 2659.624646 0.83365867 0.789299524 1.072699254 0.786624172 0.834083839 0.731954793 0.711084665 0.746416392 0.812595944 1 11.37700694 -6.424845745 23.33428863 0.787114051 0.894633908 0.140570572 0.102555785 43.3837131 10318.1666 0.028257392 0.041912468 3.76E-07 6.424845745 0.107519857 RHS(ph)EVETDSK ddPTM_K562_Paclitaxel_30min_R1 4 RHSEVETDSK 10 1 Q9NX58 Q9NX58 LYAR Cell growth-regulating nucleolar protein 1 RHS(1)EVETDSK;RHS(1)EVETDSK;RHS(1)EVETDSK;RHS(1)EVETDSK 118.76 0.0018912 30740300 12167 9861.2 19878.4 12850.1 9639.93 7899.09 8426.98 11865.1 10534.88 13776.6 TRUE FALSE 12337.37554 10937.87916 14859.85207 12025.9521 10953.05167 9299.882703 10025.95546 10857.0857 11546.8023 10968.92136 1.124757406 0.997169987 1.354723184 1.09636597 0.998553214 0.847839309 0.914032942 0.989804315 1.052683479 1 13.42113404 -6.742497042 3.621602164 0.955317105 1.153038615 0.451172018 0.096586589 0.210322549 5.855585015 0.031117299 0.038924553 1.81E-07 6.742497042 0.197721511 RHS(ph)IAIGEVPACR ddPTM_K562_Paclitaxel_30min_R1 1 RHSIAIGEVPACR 13 1 Q8WUY9-2;Q8WUY9 Q8WUY9-2 DEPDC1B DEP domain-containing protein 1B 1 RHS(1)IAIGEVPACR 80.738 0.018679 23544000 593.58 598.23 558.28 519.6 418.31 658.91 597.26 793.91 833.14 684.59 TRUE FALSE 601.8919514 663.5467745 417.3353093 486.2751816 475.290904 775.7584369 710.5869671 726.4623901 913.1668196 545.0701822 1.104246703 1.217360252 0.765654264 0.892133156 0.871981113 1.4232267 1.303661419 1.332786885 1.67531971 1 9.09029819 -7.26480754 24.88598166 1.365089541 0.968293003 0.485402357 0.193490733 239.4264686 1769018.614 0.067155285 0.061641936 5.43E-08 7.26480754 -0.396796538 RHS(ph)PPIEK ddPTM_K562_Paclitaxel_30min_R1 1 RHSPPIEK 8 1 F5GZK9;Q8IZD4-2;Q8IZD4 F5GZK9 DCP1B mRNA-decapping enzyme 1B 1 RHS(1)PPIEK 79.036 0.019613 18328000 3259.8 2810.2 5465.6 3877 2931.1 2787.5 2611.1 3627.9 2619.2 4743.9 TRUE FALSE 3305.447257 3117.027139 4085.741682 3628.346573 3330.365444 3281.823987 3106.542594 3319.68725 2870.785863 3777.090576 0.875130525 0.825245537 1.081716628 0.960619424 0.881727715 0.868876168 0.822469711 0.87890062 0.760052163 1 11.88305967 -6.929741084 4.364448838 0.857362843 0.937827348 0.131421246 0.083380115 0.405515163 15.10895346 0.026992327 0.030592269 1.18E-07 6.929741084 0.080464506 RHS(ph)VSEMTSCPEPQGFSDPPGQGPTGTFR ddPTM_K562_Paclitaxel_30min_R1 1 RHSVSEMTSCPEPQGFSDPPGQGPTGTFR 29 1 P85299-2;P85299-4;P85299-3;P85299;P85299-5 P85299-2 PRR5 Proline-rich protein 5 1 RHS(0.299)VS(0.233)EMT(0.233)S(0.233)CPEPQGFS(0.001)DPPGQGPTGTFR 58.915 0.00143 38804000 262.37 419.31 268.95 271.14 252.58 344.96 356.15 320.26 218.38 298.93 TRUE FALSE 266.0439895 465.0916838 201.0502462 253.750294 286.9856722 406.1338125 423.7276033 293.051914 239.3563747 238.0079019 1.117794776 1.95410186 0.844720888 1.066142308 1.205782119 1.706387936 1.780308972 1.231269683 1.005665664 1 7.894865662 RHSVSEMT(ph)SCPEPQGFSDPPGQGPTGTFR ddPTM_K562_Paclitaxel_30min_R1 1 RHSVSEMTSCPEPQGFSDPPGQGPTGTFR 29 1 P85299-2;P85299-4;P85299-3;P85299;P85299-5 P85299-2 PRR5 Proline-rich protein 5 1 RHS(0.24)VS(0.14)EMT(0.302)S(0.302)CPEPQGFS(0.015)DPPGQGPTGTFR 46.781 0.030565 9774600 564.49 723.52 814.93 927.24 643.99 676.29 735.5 774.13 941.09 749.63 TRUE FALSE 572.3946016 802.5163604 609.1908426 867.7709766 731.7123408 796.2205359 875.0572854 708.3628245 1031.485899 596.8549945 0.959017863 1.344575094 1.020668082 1.453905864 1.225946583 1.334026762 1.466113702 1.186825663 1.728201839 1 9.221236662 -4.162656348 0.58606021 1.353984947 3.58E-16 0.194269846 0.207133502 18.9989248 1.867446932 0.091667989 23.21478936 6.88E-05 4.162656348 -1.353984947 RHT(ph)VEDAVVSQGPEAAGPLSTPQEVSASR ddPTM_K562_Paclitaxel_30min_R1 2 RHTVEDAVVSQGPEAAGPLSTPQEVSASR 29 1 Q96NW4 Q96NW4 ANKRD27 Ankyrin repeat domain-containing protein 27 1 RHT(0.998)VEDAVVS(0.002)QGPEAAGPLSTPQEVSASR;RHT(1)VEDAVVSQGPEAAGPLSTPQEVSASR 97.61 7.05E-08 25882000 264.569 470.51 707.84 269.07 553.5 382.33 292.97 525.23 232.133 432.06 TRUE FALSE 268.2737823 521.881873 529.1370375 251.8130545 628.8960708 450.1308573 348.5595281 480.6084331 254.4304118 344.0059348 0.779852192 1.517072295 1.538162526 0.732002065 1.828154712 1.308497359 1.013236961 1.397093435 0.73961053 1 8.426289644 -8.760662614 24.99992647 0.869805188 1.275978031 0.184918062 0.330526522 32.05252735 1031896.945 0.246175047 0.080461522 1.74E-09 8.760662614 0.406172842 RHVTLPS(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 1 RHVTLPSSPR 10 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 RHVT(0.003)LPS(0.768)S(0.229)PR 75.652 0.026874 79557000 1152.6 1320.5 1801.3 1279.4 1015.1 1201.1 1022.6 1294.6 1088.1 1271.9 TRUE FALSE 1168.739956 1464.676656 1346.539537 1197.34501 1153.373806 1414.098221 1216.633012 1184.615649 1192.616867 1012.686082 1.154098962 1.446328415 1.329671219 1.182345676 1.138925306 1.396383584 1.201392054 1.169775778 1.177676763 1 9.983971313 -9.736502718 0.295500435 0.93297914 1.310434526 0.408967328 0.097170545 4.422020024 0.699637982 0.493717472 0.135695472 1.83E-10 9.736502718 0.377455387 RHVTLPSS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 RHVTLPSSPR 10 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 RHVTLPS(0.315)S(0.685)PR 101.38 0.0054288 76933000 1243.3 1086.6 1411.2 1180.7 1182.3 1202.7 1136.9 1574.9 1108.4 1470.5 TRUE FALSE 1260.710036 1205.238663 1054.925106 1104.975187 1343.349277 1415.981958 1352.62084 1441.102415 1214.866772 1170.811293 1.07678329 1.029404713 0.901020611 0.943768815 1.147366177 1.209402375 1.155285099 1.230857973 1.037628164 1 10.19329285 -6.770243979 24.98008131 1.146858271 0.984525543 0.424065602 0.079810637 160.2078845 454534.6727 0.024610968 0.028323367 1.70E-07 6.770243979 -0.162332729 RICPVPPVSTVTGDENIS(ph)DSEIEQYLR ddPTM_K562_Paclitaxel_30min_R1 2 RICPVPPVSTVTGDENISDSEIEQYLR 27 1 Q9HAW0-2;Q9HAW0 Q9HAW0-2 BRF2 Transcription factor IIIB 50 kDa subunit 1 RICPVPPVSTVTGDENIS(0.717)DS(0.279)EIEQY(0.003)LR;RICPVPPVSTVTGDENIS(0.944)DS(0.056)EIEQYLR 142.09 2.63E-24 109561000 4078.4 3523.9 4077.8 4354 3494.2 3535.6 3461.9 3890.1 5424.3 4301.1 TRUE FALSE 4135.510183 3908.651319 3048.308956 4074.753928 3970.169197 4162.589018 4118.777453 3559.611724 5945.328251 3424.533459 1.207612725 1.141367537 0.890138465 1.189871256 1.159331408 1.215520031 1.202726591 1.039444282 1.736098748 1 11.74169174 -7.499519623 0.942819145 1.274899786 1.096581065 0.09189847 0.202138 1.342766945 2.470676853 0.131406335 0.095508942 3.17E-08 7.499519623 -0.178318721 RIDFIPVS(ph)PAPSPTR ddPTM_K562_Paclitaxel_30min_R1 2 RIDFIPVSPAPSPTR 15 1 Q96E09 Q96E09 FAM122A Protein FAM122A 1 RIDFIPVS(0.999)PAPS(0.001)PTR;RIDFIPVS(0.999)PAPS(0.001)PTR 122.13 0.00021819 66839000 4215.9 3641.8 4625 4382.5 3996.6 4044.5 4094.3 4562.3 3490.14 4228.1 TRUE FALSE 4274.935607 4039.42404 3457.361549 4101.426065 4541.004583 4761.735287 4871.172051 4174.704138 3825.383541 3366.410899 1.269879327 1.199920081 1.027017097 1.218337924 1.34891572 1.414484277 1.446992716 1.240105342 1.136338865 1 11.71699557 -3.495038443 15.49121125 1.244492978 46.98533526 0 0.142447089 0 0 0.034677269 0 0.000319861 3.495038443 45.74084228 RIDFTPVS(ph)PAPS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 3 RIDFTPVSPAPSPTR 15 1 Q7Z309-5;Q7Z309;Q7Z309-2;G1UD79;Q7Z309-4;Q7Z309-3 Q7Z309-5 FAM122B;SPACIA2 Protein FAM122B 2 RIDFTPVS(0.997)PAPS(0.631)PT(0.373)R;RIDFTPVS(0.998)PAPS(0.881)PT(0.121)R;RIDFT(0.003)PVS(0.997)PAPS(0.947)PT(0.053)R 163.91 4.74E-05 252978000 8459.4 8420.7 9295.3 9144.4 8345.4 7882.2 8185.7 9726 6096.1 9429.9 TRUE FALSE 8577.857699 9340.100503 6948.586552 8557.919113 9482.184769 9279.997498 9738.893843 8899.715592 6681.657643 7508.081204 1.142483341 1.244006325 0.925481007 1.139827724 1.262930503 1.236001216 1.297121539 1.185351537 0.889928793 1 12.87422854 -8.753952407 24.96698213 0.944964378 1.180165956 0.463112254 0.100855377 139.1764632 464126.2544 0.076112649 0.02751005 1.76E-09 8.753952407 0.235201579 RIDFTPVS(ph)PAPSPTR ddPTM_K562_Paclitaxel_30min_R1 2 RIDFTPVSPAPSPTR 15 1 Q7Z309-5;Q7Z309;Q7Z309-2;G1UD79;Q7Z309-4;Q7Z309-3 Q7Z309-5 FAM122B;SPACIA2 Protein FAM122B 1 RIDFTPVS(0.965)PAPS(0.017)PT(0.017)R;RIDFTPVS(0.905)PAPS(0.068)PT(0.027)R 86.258 0.010772 100668000 3101 2990.1 3004.1 3190.2 3101 3063.6 2478 3164.3 3150 3202 TRUE FALSE 3144.423567 3316.56923 2245.677801 2985.594851 3523.4087 3606.886445 2948.187564 2895.472964 3452.571575 2549.430642 1.233382668 1.300905847 0.880854636 1.171082987 1.38203748 1.414781161 1.156410186 1.135733177 1.354252011 1 11.31595937 -3.761214109 1.837511579 1.205555253 9.422310367 0.003575828 0.161880151 3258.804752 71.40691237 0.045465737 111083.5873 0.000173295 3.761214109 8.216755114 RIDFTPVSPAPS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 4 RIDFTPVSPAPSPTR 15 1 Q7Z309-5;Q7Z309;Q7Z309-2;G1UD79;Q7Z309-4;Q7Z309-3 Q7Z309-5 FAM122B;SPACIA2 Protein FAM122B 1 RIDFTPVSPAPS(0.977)PT(0.023)R;RIDFTPVSPAPS(0.748)PT(0.252)R;RIDFTPVS(0.001)PAPS(0.776)PT(0.223)R;RIDFTPVSPAPS(0.807)PT(0.193)R 109.37 0.001323 54439000 4587.11 4837.79 5451.4 5346.9 4711.2 4496.58 4337.59 6047.5 4067.74 5033.49 TRUE FALSE 4651.343692 5365.996273 4075.126648 5003.973766 5352.945201 5293.985328 5160.625059 5533.727128 4458.464602 4007.661975 1.160612777 1.338934348 1.016833923 1.248601753 1.335677818 1.32096603 1.287689703 1.380786893 1.112485192 1 11.96854511 -4.998782168 16.0740482 1.241648444 1.075873416 0.011463582 0.131051016 5308292.26 159170974.7 0.031647593 16614015.58 1.00E-05 4.998782168 -0.165775028 RIDIS(ph)PSTFR ddPTM_K562_Paclitaxel_30min_R1 1 RIDISPSTFR 10 1 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 RIDIS(0.875)PS(0.09)T(0.035)FR 83.243 0.018487 245380000 1160.6 1103 1300.1 1235.5 1470 1126.9 1137.9 1332.9 1375.4 1442.6 TRUE FALSE 1176.851981 1223.42927 971.8736756 1156.26056 1670.238887 1326.739893 1353.810585 1219.661825 1507.513315 1148.597328 1.024599267 1.065150719 0.846139593 1.006671817 1.454155296 1.15509575 1.178664229 1.061870679 1.312481997 1 10.1656574 -6.555282919 24.99904472 1.197421078 0.977135654 0.386387257 0.128764566 187.9775324 145019.1575 0.037128934 0.047933584 2.78E-07 6.555282919 -0.220285424 RIDIS(ph)PSTLR ddPTM_K562_Paclitaxel_30min_R1 1 RIDISPSTLR 10 1 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;Q9NYF8-4 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 RIDIS(0.992)PS(0.006)T(0.003)LR 78.401 0.023988 479440000 1429.3 1253.7 1721.8 1582.9 1317.8 1388.3 1342.8 1524.4 1312.4 1647.4 TRUE FALSE 1449.31461 1390.583206 1287.110295 1481.379879 1497.306671 1634.495512 1597.58929 1394.892705 1438.461884 1311.658976 1.104947732 1.060171303 0.981284251 1.129394077 1.141536557 1.246128409 1.217991353 1.063456837 1.096673686 1 10.35717696 -6.419725661 8.226750748 1.140729599 1.050109119 0.186847681 0.072557254 0.460745624 33.18054852 0.021281192 0.031586651 3.80E-07 6.419725661 -0.09062048 RIDS(ph)VY(ph)LDPLVFR ddPTM_K562_Paclitaxel_30min_R1 2 RIDSVYLDPLVFR 13 1 H7BZJ0;H7C147;C9JSR4;O60443-3;O60443 H7BZJ0 DFNA5 Non-syndromic hearing impairment protein 5 2 RIDS(1)VY(1)LDPLVFR;RIDS(1)VY(1)LDPLVFR 57.802 0.025583 88559000 3865.6 4454.2 4118.4 4270.3 4154.5 4439.4 4416.7 4677.1 2753.4 4903.9 TRUE FALSE 3919.730326 4940.524619 3078.658984 3996.422071 4720.413236 5226.665258 5254.745768 4279.751161 3017.876373 3904.482488 1.003905214 1.26534685 0.78849348 1.023547188 1.208972828 1.338632014 1.345823879 1.09611227 0.772926087 1 11.93091563 -8.637021662 6.60450283 0.890509854 1.142143717 0.258697563 0.168555257 0.305995132 16.21514988 0.12600899 0.046321576 2.31E-09 8.637021662 0.251633863 RIEQHYFEDR ddPTM_K562_Paclitaxel_30min_R1 3 RIEQHYFEDR 10 1 C9JNK6;O75431-2;O75431 C9JNK6 MTX2 Metaxin-2 0 ;; 138.76 0.00040634 146898000 7981.3 7831.6 8522.6 8207.3 7267.3 7482.7 7779.2 8596.2 7660.1 9177.5 FALSE TRUE 8093.062824 8686.680573 6370.964224 7680.920513 8257.229296 8809.651783 9255.26259 7865.899154 8395.886831 7307.120462 1.107558424 1.188796684 0.871884384 1.051155589 1.130025068 1.20562564 1.266608733 1.076470437 1.149000742 1 12.83508728 -6.828644705 4.630484661 1.15337976 1.051230973 0.135146735 0.099691342 0.374797251 15.52679389 0.032163832 0.037434523 1.48E-07 6.828644705 -0.102148787 RIEYIEAR ddPTM_K562_Paclitaxel_30min_R1 2 RIEYIEAR 8 1 Q8WUW1;Q8WUW1-2 Q8WUW1 BRK1 Protein BRICK1 0 ; 116.52 0.0082677 9779800 3721.4 3611.6 4302 4427.1 3281.8 3601.7 3899.9 3936.3 3701.2 4071.9 FALSE TRUE 3773.511082 4005.926702 3215.906894 4143.165621 3728.836721 4240.410925 4639.885666 3601.886745 4056.716797 3242.044545 1.163929437 1.235617416 0.991937911 1.277948394 1.15014975 1.307943449 1.431160369 1.110992368 1.251283485 1 11.6626882 -5.21533338 19.22999237 1.204413456 1.163926883 0.000718972 0.130120431 10369.04478 4322761.155 0.032020103 7.619254161 6.09E-06 5.21533338 -0.040486573 RIHAESLLLDS(ph)PAVAK ddPTM_K562_Paclitaxel_30min_R1 1 RIHAESLLLDSPAVAK 16 1 Q9H4L5-5;Q9H4L5;Q9H4L5-6;Q9H4L5-2 Q9H4L5-5;Q9H4L5-6 OSBPL3 Oxysterol-binding protein-related protein 3 1 RIHAESLLLDS(1)PAVAK 68.952 0.025149 0 1200.5 959.31 1778 1288.8 1019.7 988.95 950.29 1263.7 1346.9 1562.1 TRUE FALSE 1217.310704 1064.05071 1329.12191 1206.142136 1158.600404 1164.326397 1130.602567 1156.340797 1476.275763 1243.743163 0.978747655 0.855522862 1.068646606 0.969767853 0.931543134 0.936146973 0.909032187 0.929726355 1.186961913 1 10.28047288 -8.741390797 24.99696417 1.093480993 0.946935325 0.435462245 0.06653325 181.8515191 226737.6905 0.043266924 0.016308041 1.81E-09 8.741390797 -0.146545668 RILS(ph)DVTHSAVFGVPASK ddPTM_K562_Paclitaxel_30min_R1 2 RILSDVTHSAVFGVPASK 18 1 E9PG46;Q2M2I8-2;Q2M2I8 E9PG46 AAK1 AP2-associated protein kinase 1 1 RILS(0.978)DVT(0.022)HSAVFGVPASK;RILS(0.678)DVT(0.316)HS(0.007)AVFGVPASK 89.201 0.0016397 36614000 7245 6427.2 10899.3 7085.1 6365.3 6422.7 5876.5 8308.2 6877.8 10464.8 TRUE FALSE 7346.452353 7128.943431 8147.636914 6630.693398 7232.361625 7561.675666 6991.535198 7602.366552 7538.443421 8332.068016 0.881708159 0.855603125 0.977864907 0.795804041 0.868015193 0.907538879 0.839111633 0.912422527 0.904750586 1 13.0244589 -9.306687594 1.164844936 0.999717627 0.876712954 0.394306697 0.045288349 1.076057372 2.555837999 0.04205663 0.013025101 4.94E-10 9.306687594 -0.123004674 RILSQST(ph)DSLNMR ddPTM_K562_Paclitaxel_30min_R1 2 RILSQSTDSLNMR 13 1 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 RILS(0.044)QS(0.29)T(0.529)DS(0.138)LNMR;RILSQS(0.295)T(0.612)DS(0.093)LNMR 123.76 0.001339 42341000 4093.2 3174.5 2659.8 2497.4 1575.01 1200.49 1172.85 1025.55 1508.95 1352.14 TRUE FALSE 4150.517429 3521.102645 1988.300594 2337.227942 1789.553027 1413.380046 1395.392165 938.4231262 1653.89139 1076.573126 3.855304697 3.270658129 1.846879275 2.170988562 1.662267973 1.312850945 1.296142483 0.871676158 1.536255504 1 10.0722306 -3.720177269 0.415468474 1.064063372 13.80500924 0.917544649 0.265372789 4.450733217 0.219330027 0.181705075 36.7464228 0.000190468 3.720177269 12.74094587 up RIPERLS(ph)IFCR ddPTM_K562_Paclitaxel_30min_R1 1 RIPERLSIFCR 11 2 A1A4Z1;Q8NA54-2;Q8NA54 A1A4Z1 IQUB IQ and ubiquitin-like domain-containing protein 1 RIPERLS(1)IFCR 81.789 0.018303 0 0 0 0 0 70.195 0 0 0 0 0 TRUE FALSE 0 0 0 0 79.75674741 0 0 0 0 0 0 RIPLAEWESR ddPTM_K562_Paclitaxel_30min_R1 2 RIPLAEWESR 10 1 P31930 P31930 UQCRC1 "Cytochrome b-c1 complex subunit 1, mitochondrial" 0 ; 141.89 0.0012087 35559000 1601.17 1586.44 1870.57 1715.71 1913.29 1784.71 1476.92 1816.67 1740.01 1765.13 FALSE TRUE 1623.59132 1759.652884 1398.321469 1605.67204 2173.91249 2101.20326 1757.15786 1662.332544 1907.145735 1405.395537 1.155255782 1.252069498 0.994966493 1.142505435 1.54683321 1.495097433 1.25029418 1.182821846 1.357017071 1 10.45676051 -6.574096307 24.99947916 1.323352245 1.13303332 0.214887327 0.156186529 147.4039253 71947.47778 0.047007284 0.060686156 2.67E-07 6.574096307 -0.190318925 RIPSIVSS(ph)PLNS(ph)PLDR ddPTM_K562_Paclitaxel_30min_R1 1 RIPSIVSSPLNSPLDR 16 1 P49790-2;P49790;P49790-3 P49790-2 NUP153 Nuclear pore complex protein Nup153 2 RIPS(0.023)IVS(0.401)S(0.577)PLNS(0.999)PLDR 152.86 2.76E-07 42535000 1754.3 1743.4 2280.8 1965.6 1551.1 1835.1 1524.1 1686.7 1396 1932.9 TRUE FALSE 1778.865612 1933.750308 1704.983831 1839.535214 1762.38608 2160.529219 1813.290019 1543.404307 1530.092037 1538.973919 1.155877686 1.25651922 1.107870517 1.195299797 1.145169557 1.403876435 1.1782461 1.002878793 0.994228699 1 10.58775307 -8.234076371 4.807795066 0.996916983 1.210508245 0.610291547 0.076081452 0.132238047 8.207075748 0.03988237 0.021203868 5.83E-09 8.234076371 0.213591262 RIPSIVSS(ph)PLNSPLDR ddPTM_K562_Paclitaxel_30min_R1 1 RIPSIVSSPLNSPLDR 16 1 P49790-2;P49790;P49790-3 P49790-2 NUP153 Nuclear pore complex protein Nup153 1 RIPSIVS(0.089)S(0.911)PLNSPLDR 116.04 0.00037819 187200000 739.86 910.37 956.9 973.27 826.13 907.58 690.72 982.02 765.3 1088.3 TRUE FALSE 750.2203227 1009.767275 715.3187602 910.8488184 938.6628925 1068.52657 821.7805142 898.5912714 838.8104845 866.5038626 0.865801475 1.165334996 0.825522875 1.05117687 1.083276063 1.233146921 0.948386441 1.03703089 0.968040098 1 9.75906237 -5.222246103 22.72866997 1.03482141 0.865799991 0.181224136 0.107673674 12413.8511 7198482.555 0.026638288 6.509977297 5.99E-06 5.222246103 -0.16902142 RIPSIVSSPLNS(ph)PLDR ddPTM_K562_Paclitaxel_30min_R1 1 RIPSIVSSPLNSPLDR 16 1 P49790-2;P49790;P49790-3 P49790-2 NUP153 Nuclear pore complex protein Nup153 1 RIPSIVSSPLNS(1)PLDR 117.4 0.00030901 24455000 1766.9 1508.8 1215.7 1214.4 1413.3 1080.7 1293.1 1496.2 1459 1907.7 TRUE FALSE 1791.642051 1673.535886 908.7814994 1136.513819 1605.815387 1272.346971 1538.458975 1369.088471 1599.143469 1518.909693 1.179557981 1.101800781 0.598311739 0.74824318 1.05721584 0.837671244 1.012870602 0.901362653 1.05282327 1 10.56882038 -7.787855427 24.89279893 0.98354435 0.912453296 0.040702997 0.164948493 945.0877836 890580.7804 0.074369453 0.050157239 1.63E-08 7.787855427 -0.071091055 RIS(ph)FSASHR ddPTM_K562_Paclitaxel_30min_R1 2 RISFSASHR 9 1 E9PKY8;E9PJM0;Q03393 E9PKY8 PTS 6-pyruvoyl tetrahydrobiopterin synthase 1 RIS(1)FSASHR;RIS(1)FSASHR 126.66 0.00081292 38682000 1611.8 1785.44 1877.15 1969.65 1803.11 1551.42 1516.52 2101.8 1711.25 2042.01 TRUE FALSE 1634.370173 1980.380377 1403.240266 1843.325465 2048.724109 1826.542554 1804.271753 1923.238971 1875.623209 1625.847241 1.005242148 1.218060545 0.863082478 1.133763012 1.26009631 1.123440449 1.109742482 1.182914927 1.153628189 1 10.666976 -6.492276936 24.98205976 1.149973863 1.039505123 0.188486664 0.101104454 1063.008349 867796.3305 0.027286295 0.040410787 3.22E-07 6.492276936 -0.11046874 RIS(ph)GCLHDIQVHPIK ddPTM_K562_Paclitaxel_30min_R1 1 RISGCLHDIQVHPIK 15 1 Q15058 Q15058 KIF14 Kinesin-like protein KIF14 1 RIS(1)GCLHDIQVHPIK 75.91 0.014425 18146000 2601.6 2318.2 3503 2602 2152.6 1694 1706.3 2461.9 2267.7 3630 TRUE FALSE 2638.030427 2571.308916 2618.624325 2435.119366 2445.820564 1994.407115 2030.061518 2252.746228 2485.522717 2890.204007 0.912748865 0.889663466 0.906034425 0.842542381 0.846244956 0.690057556 0.702393849 0.779441943 0.859981756 1 11.49695561 -6.661555415 2.040077546 0.787278085 0.900116966 0.158397044 0.083661102 0.457162258 3.894315137 0.027646451 0.038584929 2.18E-07 6.661555415 0.112838881 RIS(ph)GLIYEETR ddPTM_K562_Paclitaxel_30min_R1 1 RISGLIYEETR 11 1 P62805 P62805 HIST1H4A Histone H4 1 RIS(1)GLIYEETR 104.09 0.0043894 29507000 2141.3 2207.6 2734.4 2300.9 2071.9 1731 1972 2366.7 1907.1 2581.2 TRUE FALSE 2171.284806 2448.633234 2044.066901 2153.330572 2354.127858 2037.968546 2346.176705 2165.634063 2090.285476 2055.150023 1.056509151 1.191462037 0.994607147 1.047772935 1.145477377 0.991639794 1.141608486 1.053759598 1.017096296 1 11.005028 -14.99999999 0.091923352 0.740005438 1.136023649 0.141949817 0.06260638 411.6268271 2.61411715 20.44000759 1.354160212 1.00E-15 14.99999999 0.396018211 RIS(ph)LSDMPR ddPTM_K562_Paclitaxel_30min_R1 1 RISLSDMPR 9 1 Q9ULU4-19;Q9ULU4-16;H7C4X9;A0A087WVZ6;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-14;Q9ULU4-12;Q9ULU4-4;Q9ULU4-18;Q9ULU4-21;Q9ULU4-23;Q9ULU4-15;Q9ULU4-6;Q9ULU4-3;A0A087WYS3;Q9ULU4-8;Q9ULU4-17;A0A087WV57 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 RIS(0.893)LS(0.107)DMPR 101.35 0.0062632 44816000 1255.1 950.64 1172.4 1469 1166.7 1102.8 970.05 1459.8 878.58 1260.8 TRUE FALSE 1272.675272 1054.43409 876.4131199 1374.784915 1325.624292 1298.366096 1154.111923 1335.780878 962.9715346 1003.848268 1.267796452 1.050391901 0.873053377 1.369514656 1.320542491 1.293388789 1.149687618 1.330660141 0.959279968 1 9.971325506 -4.182554792 13.28572338 1.173060699 48.14733734 0 0.170260643 0 0 0.039469374 0 6.57E-05 4.182554792 46.97427664 RIS(ph)QSQPVR ddPTM_K562_Paclitaxel_30min_R1 4 RISQSQPVR 9 1 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 RIS(0.5)QS(0.5)QPVR;RIS(0.5)QS(0.5)QPVR;RIS(0.5)QS(0.5)QPVR;RIS(0.5)QS(0.5)QPVR 92.792 0.0090811 240779000 4188.38 4058.89 4785.8 4129.06 3967.01 3878.61 3855.56 4454.1 3666.34 5041.8 TRUE FALSE 4247.030242 4502.053336 3577.5656 3864.240573 4507.383924 4566.427025 4587.132383 4075.696403 4018.508339 4014.278392 1.057980994 1.121509994 0.891210138 0.962623962 1.122837901 1.137546174 1.142704101 1.015299888 1.001053725 1 11.97092496 RIS(ph)QVSSGETEYNPTEAR ddPTM_K562_Paclitaxel_30min_R1 3 RISQVSSGETEYNPTEAR 18 1 H0Y764;A0A494C1V1;Q6ZNJ1-2;Q6ZNJ1-3;Q6ZNJ1;H7C3Y7 H0Y764 NBEAL2 Neurobeachin-like protein 2 1 RIS(1)QVSSGETEYNPTEAR;RIS(0.842)QVS(0.152)S(0.002)GET(0.004)EYNPTEAR;RIS(0.948)QVS(0.047)S(0.004)GETEYNPTEAR 162.26 3.13E-09 112453000 2481.11 2547.43 3194.05 2759.79 2504 2502.46 2600.58 3214.95 2818.31 3984.3 TRUE FALSE 2515.853195 2825.567022 2387.672574 2582.789422 2845.087193 2946.236145 3094.026479 2941.81993 3089.021268 3172.297473 0.79306976 0.890700524 0.752663517 0.814169996 0.896853847 0.928738925 0.975326717 0.927346806 0.973748929 1 11.63131235 -7.036883875 1.956391032 0.960557583 0.813206548 0.777764637 0.037437744 0.160261047 1.228477522 0.013888029 0.014866664 9.19E-08 7.036883875 -0.147351036 RIS(ph)SSSVQPCSEEVSTPQDSLAQCK ddPTM_K562_Paclitaxel_30min_R1 2 RISSSSVQPCSEEVSTPQDSLAQCK 25 1 J3QS41;P42694 J3QS41 HELZ Probable helicase with zinc finger domain 1 RIS(0.346)S(0.128)S(0.203)S(0.203)VQPCS(0.119)EEVSTPQDSLAQCK;RIS(0.443)S(0.131)S(0.183)S(0.183)VQPCS(0.054)EEVS(0.004)T(0.001)PQDSLAQCK 117.66 2.21E-08 101172000 3127.8 2706.8 4715.3 3365.7 2693.5 2596.4 2475.5 4066.4 2719.4 5301.5 TRUE FALSE 3171.59885 3002.337578 3524.864197 3149.839066 3060.400301 3056.835085 2945.213202 3720.933938 2980.610521 4221.05139 0.751376507 0.711277191 0.835067823 0.746221445 0.725032704 0.724188076 0.697743981 0.881518275 0.706129882 1 12.04338668 -11.56733849 0.477001247 1.155992928 0.748857474 0.6284787 0.056766027 25.19141219 2.540245408 4.726290748 0.028391873 2.71E-12 11.56733849 -0.407135455 RIS(ph)TSDILSEK ddPTM_K562_Paclitaxel_30min_R1 2 RISTSDILSEK 11 1 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 RIS(0.775)T(0.213)S(0.011)DILSEK;RIS(0.957)T(0.043)SDILSEK 133.48 0.0016159 21660000 4291.1 3742.3 5987.8 4358.5 3589.6 3380.6 2676.1 4210.1 4418.9 4817.2 TRUE FALSE 4351.188639 4150.89697 4476.105834 4078.965318 4078.564292 3980.101944 3183.876005 3852.425726 4843.355089 3835.451996 1.134465675 1.082244537 1.167034769 1.063490124 1.063385566 1.037713925 0.830117548 1.004425484 1.262786001 1 11.90518089 -6.728924375 1.87415384 1.018156245 1.122085219 0.143254827 0.100744313 0.666797779 4.827921349 0.03644621 0.049064519 1.87E-07 6.728924375 0.103928974 RISGLIYEETR ddPTM_K562_Paclitaxel_30min_R1 1 RISGLIYEETR 11 1 P62805 P62805 HIST1H4A Histone H4 0 111.31 0.0078004 8019300 1693.3 1492.2 2107.6 1516.9 1537.3 1666.7 1495.6 1985.8 1537 1873.1 FALSE TRUE 1717.011424 1655.123442 1575.510314 1419.612823 1746.706287 1962.265843 1779.382292 1817.093895 1684.635717 1491.361192 1.151304884 1.109807236 1.056424374 0.951890683 1.171216132 1.315754932 1.193126321 1.218413021 1.129596054 1 10.54241399 -6.972745306 24.89246298 1.192732319 1.068601173 0.230016248 0.089013262 256.2363995 234026.6448 0.027370461 0.031034515 1.06E-07 6.972745306 -0.124131146 RISSSSVQPCS(ph)EEVSTPQDSLAQCK ddPTM_K562_Paclitaxel_30min_R1 1 RISSSSVQPCSEEVSTPQDSLAQCK 25 1 J3QS41;P42694 J3QS41 HELZ Probable helicase with zinc finger domain 1 RIS(0.107)S(0.107)S(0.107)S(0.107)VQPCS(0.554)EEVS(0.014)T(0.005)PQDSLAQCK 51.301 0.026404 0 760.94 580.33 1036.7 959.55 768.52 524.24 588.52 1029.4 792.15 903.53 TRUE FALSE 771.5955077 643.6923919 774.9722633 898.0087578 873.2054352 617.2066033 700.1885977 941.9460447 868.2395469 719.39009 1.072568998 0.894775173 1.077262912 1.24829181 1.213813545 0.857958167 0.97330865 1.309367557 1.20691063 1 9.490630476 -8.251716738 24.82058636 1.193604326 1.050232285 0.142410759 0.136136079 1100.905789 2810472.026 0.06923982 0.039353304 5.60E-09 8.251716738 -0.14337204 RIST(ph)SDILSEK ddPTM_K562_Paclitaxel_30min_R1 1 RISTSDILSEK 11 1 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 RIS(0.097)T(0.875)S(0.029)DILSEK 160.46 0.002336 11083000 1863.2 1748.5 2673.3 1873.5 1478.4 1290.4 1256.7 1766.2 1858 2622.5 TRUE FALSE 1889.290548 1939.407143 1998.392352 1753.342095 1679.78311 1519.234322 1495.152265 1616.150286 2036.469202 2088.03306 0.904818312 0.928820132 0.957069306 0.83970993 0.804481089 0.727591124 0.716057754 0.774006081 0.975305056 1 11.02792884 -6.397315129 4.289957166 0.811282976 0.92954496 0.169081048 0.090296347 0.328916344 9.903727292 0.026178711 0.039590046 4.01E-07 6.397315129 0.118261983 RISVQPS(ph)S(ph)S(ph)LS(ph)AR ddPTM_K562_Paclitaxel_30min_R1 1 RISVQPSSSLSAR 13 1 C9J159;F5H6W4;Q9H992 C9J159 7-Mar E3 ubiquitin-protein ligase MARCH7 4 RIS(0.473)VQPS(0.865)S(0.865)S(0.865)LS(0.932)AR 78.814 0.011747 5640900 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 RITS(ph)PLMEPSSIEK ddPTM_K562_Paclitaxel_30min_R1 1 RITSPLMEPSSIEK 14 1 P28066 P28066 PSMA5 Proteasome subunit alpha type-5 1 RIT(0.168)S(0.832)PLMEPSSIEK 123.55 0.00035085 17359000 2468.5 2199.4 3786.8 2733.3 2021.2 2384.7 1820.3 2533.8 2479 3393.9 TRUE FALSE 2503.066616 2439.53793 2830.775505 2557.998372 2296.521659 2807.593062 2165.692422 2318.537875 2717.119026 2702.221317 0.926299634 0.902789832 1.047573523 0.946628004 0.849864386 1.038994491 0.801448945 0.858011836 1.005513134 1 11.39993012 -6.536502379 24.8497637 0.916202093 0.960581708 0.027075027 0.079444537 673.5608003 1228581.649 0.02323998 0.03001656 2.91E-07 6.536502379 0.044379616 RKDVPS(ph)PGGLS(ph)APS(ph)S(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 RKDVPSPGGLSAPSSPR 17 2 E9PIR9;E7ET48;Q8N1P7 E9PIR9 AIM1L Absent in melanoma 1-like protein 4 RKDVPS(1)PGGLS(1)APS(1)S(1)PR 54.859 0.030748 489950000 1375.9 1008.8 1275.8 1437.1 1243.6 1404.2 1143.9 1429.7 1336.5 1198.8 TRUE FALSE 1395.166845 1118.944196 953.7085111 1344.930838 1412.999374 1653.215154 1360.949053 1308.238061 1464.876797 954.483902 1.461697617 1.172302847 0.999187633 1.409066026 1.480380519 1.732051374 1.425848095 1.370623494 1.5347318 1 9.898577056 -6.490595095 19.43461034 1.456767271 1.206675352 0.175409808 0.202163166 62.68321248 37733.52236 0.055676136 0.082345862 3.23E-07 6.490595095 -0.250091919 RKEDEVEEWQHR ddPTM_K562_Paclitaxel_30min_R1 4 RKEDEVEEWQHR 12 2 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 ;;; 97.911 0.0038551 142759000 15132.4 12706.5 26924.4 16925.8 13767.4 13146 12494.9 17454.9 16294.6 20818.6 FALSE TRUE 15344.30029 14093.83864 20127.00222 15840.25495 15642.75296 15477.25852 14865.74205 15971.99729 17859.76914 16575.75789 0.925707312 0.850268128 1.214243255 0.955627794 0.943712684 0.933728558 0.89683634 0.963575687 1.0774632 1 14.01678722 -8.738878745 22.61895588 1.038731426 0.96151713 0.102398642 0.092650518 169.3340867 169774.699 0.064313887 0.024246297 1.82E-09 8.738878745 -0.077214295 RKES(ph)FESSPHSR ddPTM_K562_Paclitaxel_30min_R1 2 RKESFESSPHSR 12 2 O95279 O95279 KCNK5 Potassium channel subfamily K member 5 1 RKES(0.856)FES(0.109)S(0.034)PHS(0.001)R;RKES(0.985)FES(0.011)S(0.005)PHSR 76.574 0.019307 44779000 1476.39 1584.47 2618.79 1751.08 1550.13 1359.16 1427.68 1769.56 1668.83 2118.67 TRUE FALSE 1497.064015 1757.467793 1957.644076 1638.773566 1761.28395 1600.187942 1698.574827 1619.224833 1829.128578 1686.883891 0.887473064 1.041842774 1.160509082 0.971479765 1.044105027 0.948605859 1.006930492 0.959891099 1.084323935 1 10.72014496 -7.15990705 16.90069905 0.997656013 1.027224474 0.016894317 0.072345208 12.50129546 2062.595962 0.02405415 0.024054476 6.92E-08 7.15990705 0.029568461 RKHS(ph)PS(ph)PPPPTPTESR ddPTM_K562_Paclitaxel_30min_R1 2 RKHSPSPPPPTPTESR 16 2 Q92922 Q92922 SMARCC1 SWI/SNF complex subunit SMARCC1 2 RKHS(1)PS(1)PPPPTPTESR;RKHS(1)PS(1)PPPPTPTESR 66.674 0.024481 19635600 2694.4 2279.8 4318.3 2945.9 2551.7 2018.84 1936.17 2878.5 2449.8 3236.4 TRUE FALSE 2732.129913 2528.716274 3228.091757 2756.963159 2899.284741 2376.852928 2303.54815 2633.953458 2685.114236 2576.819904 1.060271969 0.981332172 1.25274248 1.069909137 1.125140619 0.922397768 0.893949999 1.022172118 1.042026349 1 11.33137599 -7.254947514 24.98385001 0.97236005 1.098454054 0.392558293 0.075663917 564.5088024 2172503.552 0.026294566 0.025694626 5.56E-08 7.254947514 0.126094004 RKREEGS(ph)DIEDEDMEELLNDTR ddPTM_K562_Paclitaxel_30min_R1 1 RKREEGSDIEDEDMEELLNDTR 22 3 F5H5U2;Q8NHQ9-2;Q8NHQ9 F5H5U2 DDX55 ATP-dependent RNA helicase DDX55 1 RKREEGS(1)DIEDEDMEELLNDTR 76.533 0.0030739 24350000 1631.2 1057.7 3074.9 1869.1 1245.7 1233.7 1015.6 1787 2622.3 2233.1 TRUE FALSE 1654.041833 1173.183263 2298.603465 1749.224292 1415.38543 1452.479373 1208.304798 1635.183196 2874.183632 1777.992994 0.930285911 0.659835706 1.292807943 0.983819564 0.796057934 0.816920751 0.679589178 0.919679212 1.616532597 1 10.79603392 -8.638149763 8.905722205 1.305627659 0.879712627 0.37815514 0.21762816 0.259091359 18.89526303 0.145878423 0.054731578 2.30E-09 8.638149763 -0.425915032 RKS(ph)EDGTPAEDGTPAATGGSQPPSMGR ddPTM_K562_Paclitaxel_30min_R1 2 RKSEDGTPAEDGTPAATGGSQPPSMGR 27 2 Q9BQG0;Q9BQG0-2;I3L1L3 Q9BQG0 MYBBP1A Myb-binding protein 1A 1 RKS(0.852)EDGT(0.148)PAEDGTPAATGGSQPPSMGR;RKS(0.716)EDGT(0.269)PAEDGT(0.015)PAATGGSQPPSMGR 78.707 0.00042405 18785900 2336.4 1632.84 4522.9 2689 1663.31 1683.19 1764.44 2879 2309.7 3249.1 TRUE FALSE 2369.116808 1811.118993 3381.037956 2516.539576 1889.880982 1981.680113 2099.233279 2634.41098 2531.557005 2586.931637 0.915801862 0.700103152 1.306968421 0.972789362 0.730549256 0.766034976 0.811476132 1.018353536 0.978594474 1 11.33702621 -8.28188199 24.15231361 0.998855529 0.887985175 0.091398852 0.162823735 1585.476854 1873177.325 0.094834282 0.04565926 5.23E-09 8.28188199 -0.110870354 RKS(ph)HEAEVLK ddPTM_K562_Paclitaxel_30min_R1 3 RKSHEAEVLK 10 2 A2A2D0;P16949;P16949-2 A2A2D0 STMN1 Stathmin 1 RKS(1)HEAEVLK;RKS(1)HEAEVLK;RKS(1)HEAEVLK 90.15 0.00809 158890000 10869.9 7638.2 22050.4 11378.4 7208.6 5897.6 5347.1 10149.7 9290.6 13477.7 TRUE FALSE 11022.11214 8472.164507 16483.5038 10648.64035 8190.533363 6943.456554 6361.684311 9287.419633 10183.00364 10730.93734 1.027134144 0.789508338 1.536073064 0.992330867 0.763263553 0.64705033 0.592835845 0.865480744 0.948938878 1 13.38948848 -6.636554423 4.70248741 0.779048288 1.110526308 0.31528072 0.207605858 0.248087854 9.123914958 0.064021021 0.083370432 2.31E-07 6.636554423 0.33147802 RKS(ph)LSDSESDDSK ddPTM_K562_Paclitaxel_30min_R1 1 RKSLSDSESDDSK 13 2 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 RKS(0.994)LS(0.006)DSESDDSK 120.59 0.010735 75368000 4749.2 3255.3 11130 5153 3397.9 3071.8 2689.9 5375.3 3455 7091.2 TRUE FALSE 4815.703453 3610.724663 8320.093846 4822.509644 3860.751507 3616.5406 3200.294483 4918.634713 3786.868187 5646.009548 0.852939304 0.639517987 1.473623765 0.854144791 0.683801803 0.640548084 0.566824136 0.871170102 0.670715867 1 12.46301585 -6.522352133 24.46966493 0.723439426 0.988794077 0.196159394 0.225736677 22.18573495 1030938.244 0.066612262 0.087073665 3.00E-07 6.522352133 0.265354651 RKS(ph)PENTEGK ddPTM_K562_Paclitaxel_30min_R1 1 RKSPENTEGK 10 2 A0A087WZE9;Q15651-2;Q15651 A0A087WZE9 HMGN3 High mobility group nucleosome-binding domain-containing protein 3 1 RKS(1)PENTEGK 101.65 0.0042099 1495800 771.56 796.88 2100.4 1272.3 861.44 767.22 689.66 937.51 519.03 1458.1 TRUE FALSE 782.3642205 883.8860533 1570.128043 1190.700373 978.7827123 903.2756947 820.5193847 857.8626737 568.8851506 1160.93842 0.673906735 0.761354813 1.352464537 1.025636117 0.84309615 0.77805651 0.706772531 0.738938999 0.490021814 1 10.18107573 -7.132598137 2.497543561 0.719420052 0.965082058 0.1847837 0.204033586 0.47626201 5.807415565 0.077972132 0.078328585 7.37E-08 7.132598137 0.245662006 RKS(ph)QVNGEAGSYEMTNQHVK ddPTM_K562_Paclitaxel_30min_R1 1 RKSQVNGEAGSYEMTNQHVK 20 2 H0YMH7;Q05D32-2;Q05D32 H0YMH7 CTDSPL2 CTD small phosphatase-like protein 2 1 RKS(0.87)QVNGEAGS(0.03)Y(0.099)EMTNQHVK 56.081 0.020049 12301000 2750.3 1765.6 5019.5 2394.7 1881.3 1466.7 1371.6 2299.1 2280.2 3543.7 TRUE FALSE 2788.812685 1958.374179 3752.265145 2241.11466 2137.564911 1726.798652 1631.85394 2103.777104 2499.223398 2821.491995 0.98841772 0.694091701 1.329886865 0.794301265 0.757600913 0.612016144 0.57836561 0.745625757 0.885780786 1 11.46224254 -6.501322612 24.72786221 0.737548926 0.987955739 0.252684205 0.183218874 876.0564074 1004957.77 0.051152209 0.075032113 3.15E-07 6.501322612 0.250406813 RKTS(ph)DANETEDHLESLICK ddPTM_K562_Paclitaxel_30min_R1 1 RKTSDANETEDHLESLICK 19 2 F2Z2T1;Q09161 F2Z2T1 NCBP1 Nuclear cap-binding protein subunit 1 1 RKT(0.149)S(0.638)DANET(0.213)EDHLESLICK 74.732 0.005607 55244000 4072 3394.4 9562.1 5192.8 3759.5 2778.2 2914.4 4672.1 4621.3 6496.1 TRUE FALSE 4129.020563 3765.012071 7148.029592 4859.75705 4271.607549 3270.874762 3467.392186 4275.175943 5065.196514 5172.191254 0.798311656 0.727933653 1.382011848 0.939593455 0.825879659 0.632396329 0.670391332 0.826569578 0.97931346 1 12.33655991 -6.755088686 4.727791927 0.795186749 0.97752284 0.10147815 0.194406711 0.383724354 21.936115 0.062807332 0.077257046 1.76E-07 6.755088686 0.182336091 RLAAAEETAVS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 RLAAAEETAVSPR 13 1 Q9BUH6 Q9BUH6 C9orf142 Protein PAXX 1 RLAAAEETAVS(1)PR;RLAAAEETAVS(1)PR;RLAAAEETAVS(1)PR;RLAAAEETAVS(1)PR 133.96 0.00014266 239264000 5416.8 4745.2 5961.6 5271.6 5765.7 5143.2 5121.4 5668.1 4932.7 6762.9 TRUE FALSE 5492.651912 5263.296983 4456.520348 4933.503171 6551.085954 6055.274306 6093.158914 5186.559526 5406.507875 5384.617268 1.02006357 0.977469098 0.827639204 0.916221697 1.216629823 1.124550549 1.13158626 0.963217861 1.004065397 1 12.39462809 -6.717062324 24.99969184 1.076975462 0.930663269 0.394333885 0.083628188 144.0504495 81149.71282 0.026696022 0.034464255 1.92E-07 6.717062324 -0.146312193 RLAS(ph)MATLLAR ddPTM_K562_Paclitaxel_30min_R1 1 RLASMATLLAR 11 1 Q96P11-2;Q96P11-5;Q96P11;Q96P11-4 Q96P11-2 NSUN5 Probable 28S rRNA (cytosine-C(5))-methyltransferase 1 RLAS(0.5)MAT(0.5)LLAR 75.652 0.02941 7964800 279.8 176.77 241.84 280.02 124.48 170.29 125.83 0 65.311 207.56 TRUE FALSE 283.7180633 196.0703464 180.784501 262.0607705 141.4362835 200.4885405 149.7055856 0 71.58441337 165.2591581 1.716806902 1.186441639 1.093945431 1.585756418 0.855845359 1.213176582 0.905883749 0 0.433164577 1 7.368586413 -8.003691657 3.933126058 0.409601088 1.252843876 0.546402981 0.322778659 0.152497691 5.337091854 0.148501196 0.089271351 9.92E-09 8.003691657 0.843242787 RLAVPTEVSTEVPEMDT(ph)ST ddPTM_K562_Paclitaxel_30min_R1 1 RLAVPTEVSTEVPEMDTST 19 1 O00488 O00488 ZNF593 Zinc finger protein 593 1 RLAVPTEVSTEVPEMDT(0.401)S(0.3)T(0.3) 91.14 0.0012856 20226000 566.84 346.88 567.55 339.67 355.9 456.36 440.41 573.18 575.71 638.58 TRUE FALSE 574.7775089 384.7535315 424.2649831 317.8850865 404.3796054 537.2890384 523.9754984 524.4847813 631.0095178 508.4370455 1.130479209 0.7567378 0.834449391 0.625220151 0.795338595 1.056746441 1.030561213 1.031562877 1.24107699 1 8.989925341 -7.27641794 7.962354339 1.071784894 0.813390587 0.453601552 0.133144063 0.170848472 69.49841399 0.046665294 0.042468966 5.29E-08 7.27641794 -0.258394307 RLAVPTEVSTEVPEMDTS(ph)T ddPTM_K562_Paclitaxel_30min_R1 1 RLAVPTEVSTEVPEMDTST 19 1 O00488 O00488 ZNF593 Zinc finger protein 593 1 RLAVPTEVSTEVPEMDT(0.011)S(0.495)T(0.495) 143.88 2.50E-12 134810000 606.85 566.15 811.75 672.16 505.08 417.71 585.5 642.98 738.89 752.88 TRUE FALSE 615.3477723 627.9641716 606.8136729 629.0506661 573.8804471 491.7850036 696.5955685 588.3548356 809.8636859 599.4426427 1.026533197 1.04758008 1.012296473 1.049392588 0.957356728 0.820403769 1.162072096 0.981503139 1.351027819 1 9.227477907 -8.712060744 24.99978056 1.175517965 1.007350389 0.262484781 0.11289116 122.0122619 61773.19558 0.07266676 0.027465328 1.94E-09 8.712060744 -0.168167576 RLDDQES(ph)PVYAAQQR ddPTM_K562_Paclitaxel_30min_R1 1 RLDDQESPVYAAQQR 15 1 Q96ST3;H3BMA2;H3BT34;H3BQ76;H3BQ88;H3BNA0;H3BNZ3;H3BQL7;H3BP90 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 RLDDQES(1)PVYAAQQR 164.15 8.09E-05 19449000 2258.5 1983.3 2615 2507 1794.3 1940.5 1948.5 2393.8 2011.1 2446.1 TRUE FALSE 2290.125968 2199.843401 1954.810908 2346.212241 2038.714038 2284.620429 2318.217703 2190.431748 2204.275141 1947.583477 1.175880775 1.129524576 1.003710974 1.204678653 1.046791607 1.173053918 1.190304667 1.124692099 1.131800083 1 10.92746945 -10.97243898 5.462302038 0.999999683 1.129825546 0.300048269 0.060066921 2.26E-07 4.26E-08 0.05677401 0.013769686 1.07E-11 10.97243898 0.129825862 RLDLPIER ddPTM_K562_Paclitaxel_30min_R1 1 RLDLPIER 8 1 B4E1E0;P17812-2;P17812;A0A3B3ISY3;A0A3B3ITB8;A0A3B3IRQ8;A0A3B3ITF6;A0A3B3IRI2 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 0 92.239 0.023344 5999400 1636.7 1888 2192.8 2028 1884.9 1796.2 1582.5 2002.4 1685 2287.1 FALSE TRUE 1659.61885 2094.138225 1639.20052 1897.933157 2141.655292 2114.73085 1882.771114 1832.283621 1846.851779 1820.987765 0.911383855 1.150001261 0.900171078 1.042254755 1.176095377 1.161309752 1.033928481 1.006203148 1.014203288 1 10.83050551 -2.041738142 19.61931607 1.046017135 0.005221018 0 0.092356791 0 0 0.021383303 0 0.009083681 2.041738142 -1.040796117 RLEEETEYLNS(ph)QLEDAIR ddPTM_K562_Paclitaxel_30min_R1 2 RLEEETEYLNSQLEDAIR 18 1 Q8TD16;Q8TD16-2 Q8TD16 BICD2 Protein bicaudal D homolog 2 1 RLEEETEYLNS(1)QLEDAIR;RLEEETEYLNS(1)QLEDAIR 133.38 4.74E-09 7357000 1486.1 1642.38 1580.25 1162.89 903.81 1426.74 1608.14 1717.85 1531.31 1922.53 TRUE FALSE 1506.909985 1821.700603 1181.296343 1088.30744 1026.924224 1679.752307 1913.27617 1571.90792 1678.399168 1530.717331 0.984446935 1.19009602 0.771727294 0.710978715 0.670877766 1.097362833 1.249921283 1.026909338 1.096478843 1 10.57999218 -7.381179173 10.29005151 1.106560525 0.869951739 0.362153405 0.151168331 0.52066606 42.11826821 0.05932154 0.052289718 4.16E-08 7.381179173 -0.236608786 RLEEFEGERER ddPTM_K562_Paclitaxel_30min_R1 1 RLEEFEGERER 11 2 Q08378;Q08378-2;Q08378-4 Q08378 GOLGA3 Golgin subfamily A member 3 0 82.831 0.018047 9770800 2076.5 2062.8 2236.5 2725.1 2230.9 2251.3 2155.5 2225.6 2217.7 2295.3 FALSE TRUE 2105.577407 2288.02348 1671.867914 2550.324283 2534.786349 2650.536445 2564.494873 2036.521388 2430.719994 1827.5166 1.152152274 1.25198506 0.914830494 1.395513607 1.387011395 1.450348766 1.403267621 1.114365466 1.330067258 1 10.8356688 -6.288369272 24.97917021 1.316529818 1.120888761 0.235048993 0.154436254 984.6660583 913337.0777 0.043160022 0.064033674 5.15E-07 6.288369272 -0.195641057 RLEEPSLR ddPTM_K562_Paclitaxel_30min_R1 1 RLEEPSLR 8 1 O00429-4;O00429-5;O00429-3;O00429-9;O00429-2;O00429;O00429-8;O00429-6;O00429-7 O00429-4 DNM1L Dynamin-1-like protein 0 126.24 0.0028277 2292100 1086.6 1192.8 1686.6 1412 1153.7 1527 1192.2 1214.5 1315.3 1555.4 FALSE TRUE 1101.815752 1323.033938 1260.79697 1321.44064 1310.853472 1797.79201 1418.413726 1111.320644 1441.640442 1238.408626 0.889702905 1.068333916 1.018078317 1.067047348 1.058498338 1.451695322 1.145351943 0.89737799 1.164107235 1 10.27427171 -4.45736183 0.783036506 1.120334394 0.319319555 0.180865516 0.137231802 14.77698865 2.781165089 0.053751375 13.85559918 3.49E-05 4.45736183 -0.801014839 RLEESDVLQEAR ddPTM_K562_Paclitaxel_30min_R1 2 RLEESDVLQEAR 12 1 M0R301;M0R124;M0QXU7;O43615 M0R301 TIMM44 Mitochondrial import inner membrane translocase subunit TIM44 0 ; 137.84 0.00024678 15159400 3236.8 2984.7 3599.7 3236.2 2632.5 2944.6 2890.1 3385.6 3025.3 3789.1 FALSE TRUE 3282.125186 3310.57964 2690.911214 3028.644617 2991.091069 3466.783466 3438.481388 3097.972148 3315.893582 3016.87934 1.087920602 1.097352352 0.891951885 1.003899817 0.991452004 1.149128976 1.139747733 1.026879699 1.099113756 1 11.55884128 -7.240747018 24.86505752 1.088202376 1.011718555 0.200621587 0.067811494 1220.251968 1466321.799 0.023334843 0.023309563 5.74E-08 7.240747018 -0.076483822 RLEEWLGR ddPTM_K562_Paclitaxel_30min_R1 2 RLEEWLGR 8 1 P56192-2;P56192 P56192-2 MARS "Methionine--tRNA ligase, cytoplasmic" 0 ; 120.87 0.0060558 46898000 4007.9 4169.7 4544.6 5143.4 4497.7 3744.4 4190.7 4530.2 4460.9 4245.5 FALSE TRUE 4064.022965 4624.961947 3397.259523 4813.525345 5110.362887 4408.416766 4985.863448 4145.331233 4889.389377 3380.26477 1.202279479 1.368224758 1.00502764 1.424008376 1.511823255 1.304163155 1.474991987 1.226333295 1.446451598 1 11.72292054 -5.24401627 21.92096545 1.319669363 1.202278965 0.026982568 0.173351151 2418.136391 3042111.216 0.041700121 0.975090011 5.70E-06 5.24401627 -0.117390397 RLELLPSAES(ph)PVCWLEQPESHQR ddPTM_K562_Paclitaxel_30min_R1 4 RLELLPSAESPVCWLEQPESHQR 23 1 O95402;B8ZZF3 O95402 MED26 Mediator of RNA polymerase II transcription subunit 26 1 RLELLPS(0.024)AES(0.976)PVCWLEQPESHQR;RLELLPS(0.001)AES(0.999)PVCWLEQPESHQR;RLELLPS(0.07)AES(0.929)PVCWLEQPES(0.001)HQR;RLELLPS(0.028)AES(0.972)PVCWLEQPESHQR 103.31 3.29E-05 55100400 4646.64 4487 5133.37 5648.63 5237.99 4842.73 4238.75 4602.34 5438.38 5309.9 TRUE FALSE 4711.707296 4976.905834 3837.387255 5286.352154 5951.492918 5701.52017 5043.030685 4211.34249 5960.760698 4227.739465 1.114474374 1.177202587 0.907668811 1.25039686 1.407724617 1.348597807 1.192843297 0.996121574 1.409916753 1 12.04567076 -6.342118424 24.99982467 1.240087442 1.07751748 0.192869791 0.151119138 162.2931719 50287.63417 0.043001231 0.063781136 4.55E-07 6.342118424 -0.162569961 RLGDSS(ph)LSR ddPTM_K562_Paclitaxel_30min_R1 3 RLGDSSLSR 9 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 RLGDS(0.255)S(0.745)LSR;RLGDS(0.2)S(0.442)LS(0.358)R;RLGDS(0.481)S(0.519)LSR 110.08 0.0066191 88924000 6098 5214 5201.6 4796.3 3998.16 4465.2 5127.7 5886 6782.9 7216.8 TRUE FALSE 6183.390814 5783.282153 3888.391747 4488.686785 4542.777081 5257.040525 6100.654307 5385.947561 7434.427852 5746.012199 1.076118637 1.00648623 0.676711363 0.781182954 0.790596491 0.91490243 1.061719693 0.937336604 1.293841293 1 12.48834534 -7.714014883 2.703098317 1.075253516 0.85752708 0.341416578 0.136313382 0.337358227 5.028406962 0.064006284 0.044560598 1.93E-08 7.714014883 -0.217726436 RLGDSSLS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 RLGDSSLSR 9 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 1 RLGDS(0.32)S(0.158)LS(0.523)R 89.805 0.010173 11846000 817.11 728.32 770.55 817.03 744.06 835.54 997.25 1015.5 1158.1 1478.4 TRUE FALSE 828.552061 807.8404406 576.0151225 764.6293527 845.413569 983.7112874 1186.472982 929.2269364 1269.34068 1177.101268 0.703891911 0.686296466 0.489350524 0.64958672 0.718216513 0.83570659 1.007961688 0.789419705 1.078361491 1 10.20102273 -7.29222171 1.699891582 0.955319488 0.625936965 0.745689494 0.088779948 0.190316373 1.088222851 0.037939059 0.033796007 5.10E-08 7.29222171 -0.329382523 RLGGLRPES(ph)PESLTSVSR ddPTM_K562_Paclitaxel_30min_R1 1 RLGGLRPESPESLTSVSR 18 2 Q9H6F5;H0YG79 Q9H6F5 CCDC86 Coiled-coil domain-containing protein 86 1 RLGGLRPES(0.98)PES(0.008)LT(0.008)S(0.003)VSR 94.707 0.0099167 2509400000 2723.6 2746.4 3299.5 2689.8 2440.6 2617.1 2141.1 2804.3 3178.6 3028.6 TRUE FALSE 2761.738803 3046.26124 2466.500417 2517.288267 2773.05104 3081.205939 2547.362548 2566.057211 3483.918732 2411.369658 1.145298812 1.263290856 1.02286284 1.043924667 1.14999002 1.277782496 1.056396534 1.064149249 1.444788327 1 11.23563711 -6.993239686 24.73049755 1.170981567 1.119137499 0.030155783 0.132870062 678.2136882 2481002.832 0.041189724 0.046600959 1.02E-07 6.993239686 -0.051844067 RLGS(ph)VEAPK ddPTM_K562_Paclitaxel_30min_R1 1 RLGSVEAPK 9 1 P46087-2;P46087;P46087-4;F5H359;F5GWB7;F5H709;F5H5X6;P46087-3 P46087-2 NOP2 Probable 28S rRNA (cytosine(4447)-C(5))-methyltransferase 1 RLGS(1)VEAPK 73.9 0.025932 6415500 2104.7 1769.6 2434.2 2030.2 1880.3 1837.9 1780.1 1946 2023.4 2304.1 TRUE FALSE 2134.172294 1962.810912 1819.656104 1899.992059 2136.428694 2163.82576 2117.864682 1780.675153 2217.756611 1834.523155 1.163338979 1.069929756 0.991895959 1.03568715 1.164568944 1.179503106 1.154449687 0.970647412 1.208900855 1 10.8411894 -5.252044284 22.99247898 1.088234402 1.163339105 0.07347688 0.081909204 1257.366258 3076922.461 0.020695672 0.237323089 5.60E-06 5.252044284 0.075104703 RLHPPS(ph)PVPQGVCPAHR ddPTM_K562_Paclitaxel_30min_R1 1 RLHPPSPVPQGVCPAHR 17 1 Q96F44-2;Q96F44-3;Q96F44 Q96F44-2 TRIM11 E3 ubiquitin-protein ligase TRIM11 1 RLHPPS(1)PVPQGVCPAHR 68.168 0.014761 18537000 844.89 698.1 1107.8 718.03 559.02 705.11 594.46 885.86 607.41 1000.3 TRUE FALSE 856.7210667 774.3209188 828.1221889 671.9787696 635.1679883 830.1513583 707.2556817 810.6006636 665.7544445 796.4383109 1.075690427 0.972229623 1.039781961 0.843729841 0.797510591 1.042329766 0.88802318 1.017782109 0.835914641 1 9.63741881 -6.23981662 24.46222679 0.917563165 1.023533584 0.283854028 0.080886275 848.4479006 959862.664 0.021657636 0.037464861 5.76E-07 6.23981662 0.10597042 RLHPPS(ph)PVPQGVCPAHREPLAAFCGDELR ddPTM_K562_Paclitaxel_30min_R1 3 RLHPPSPVPQGVCPAHREPLAAFCGDELR 29 2 Q96F44-2;Q96F44-3;Q96F44 Q96F44-2 TRIM11 E3 ubiquitin-protein ligase TRIM11 1 RLHPPS(1)PVPQGVCPAHREPLAAFCGDELR;RLHPPS(1)PVPQGVCPAHREPLAAFCGDELR;RLHPPS(1)PVPQGVCPAHREPLAAFCGDELR 69.248 0.00016871 231318000 3456.36 3725.5 4141.98 3610.61 3087.55 3185.52 3712.42 3824.14 3872.66 5131.6 TRUE FALSE 3504.759704 4132.262689 3096.285922 3379.041635 3508.126583 3750.427245 4416.832315 3499.255437 4244.646297 4085.777103 0.857795131 1.011377416 0.757820567 0.827025447 0.858619179 0.917922625 1.081026254 0.856447953 1.03888347 1 11.99639479 -7.527088756 24.88414832 0.984605005 0.865533915 0.375285769 0.079603732 137.6953825 813861.8738 0.030149314 0.023451293 2.97E-08 7.527088756 -0.11907109 RLLEAKQEKSMY(ph)GVY(ph)NTFT(ph)TEER ddPTM_K562_Paclitaxel_30min_R1 1 RLLEAKQEKSMYGVYNTFTTEER 23 3 Q6IQ21 Q6IQ21 ZNF770 Zinc finger protein 770 3 RLLEAKQEKS(0.357)MY(0.696)GVY(0.942)NT(0.44)FT(0.426)T(0.14)EER 40.492 0.027757 8020300 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 RLLQPGGGPDVGTGAPRPGCS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 RLLQPGGGPDVGTGAPRPGCSPR 23 2 Q9NXH8 Q9NXH8 TOR4A Torsin-4A 1 RLLQPGGGPDVGTGAPRPGCS(1)PR;RLLQPGGGPDVGTGAPRPGCS(1)PR 138.46 1.43E-14 125429000 2392.65 2327.86 2643.5 2421.4 2015.36 1934.92 2318.1 2720.1 2498.64 2808.3 TRUE FALSE 2426.154482 2582.023627 1976.115731 2266.102242 2289.886152 2278.050894 2757.947374 2489.010527 2738.645536 2235.966918 1.085058308 1.15476826 0.883785764 1.013477535 1.024114504 1.018821377 1.233447307 1.113169657 1.224814873 1 11.12668313 -7.738461915 24.99090069 1.152288771 1.028010111 0.281620282 0.087751083 279.7903 304307.2675 0.033231202 0.025723056 1.83E-08 7.738461915 -0.124278659 RLLS(ph)TDAEAVSTR ddPTM_K562_Paclitaxel_30min_R1 1 RLLSTDAEAVSTR 13 1 Q15545 Q15545 TAF7 Transcription initiation factor TFIID subunit 7 1 RLLS(0.741)T(0.259)DAEAVSTR 83.891 0.01552 10247000 719.03 382.12 809.52 895.6 613.76 613.94 462.04 728.66 528.21 628.74 TRUE FALSE 729.0986384 423.8411538 605.146664 838.1602246 697.364503 722.8136389 549.709678 666.7557848 578.9469306 500.6024429 1.45644243 0.846662176 1.208836818 1.674303105 1.393050539 1.443887558 1.098096275 1.331906774 1.15650041 1 8.967521521 -9.116927172 1.076683259 0.999570163 1.309954961 0.173529108 0.212214224 1.320324204 3.294328681 0.214786077 0.069211486 7.64E-10 9.116927172 0.310384798 RLLS(ph)WSDNWR ddPTM_K562_Paclitaxel_30min_R1 1 RLLSWSDNWR 10 1 J3KSY6;J3KSX6;Q8TCD5 J3KSY6 NT5C "5(3)-deoxyribonucleotidase, cytosolic type" 1 RLLS(0.981)WS(0.019)DNWR 105.25 0.013119 11051000 1094.1 1019.2 1379.1 999.96 1018.6 832.76 937.31 1313.5 1045.8 1424.4 TRUE FALSE 1109.420776 1130.479703 1030.929149 935.8270413 1157.350565 980.4382935 1115.159679 1201.909976 1146.253763 1134.106498 0.978233329 0.996802068 0.909023227 0.82516681 1.020495489 0.864502844 0.983293616 1.059785812 1.010710868 1 10.14734041 -7.996757429 24.72407217 1.025456956 0.932581465 0.341685798 0.05719163 93.57291644 713473.1867 0.024253721 0.016254056 1.01E-08 7.996757429 -0.092875491 RLLSPAGSSGAPASPACSS(ph)PPSSEFMDVN ddPTM_K562_Paclitaxel_30min_R1 1 RLLSPAGSSGAPASPACSSPPSSEFMDVN 29 1 G5E9A6;P51784 G5E9A6 USP11 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 11 1 RLLSPAGSSGAPAS(0.01)PACS(0.306)S(0.416)PPS(0.134)S(0.134)EFMDVN 51.475 0.0068443 9174800 1040.9 1259.9 1287.8 1196.6 1037.7 1021.5 1372.4 1201.3 1199.8 1462 TRUE FALSE 1055.475811 1397.460143 962.6789627 1119.855432 1179.052308 1202.648682 1632.805736 1099.242067 1315.046151 1164.043597 0.906732199 1.200522167 0.827012807 0.96203908 1.012893599 1.033164638 1.40270153 0.944330667 1.129722421 1 10.18492938 -7.536080533 24.97454909 1.129318592 0.988161542 0.168229971 0.143063961 406.9108849 769768.5976 0.053204191 0.041234041 2.91E-08 7.536080533 -0.141157049 RLLSPAGSSGAPASPACSSPPS(ph)SEFMDVN ddPTM_K562_Paclitaxel_30min_R1 1 RLLSPAGSSGAPASPACSSPPSSEFMDVN 29 1 G5E9A6;P51784 G5E9A6 USP11 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 11 1 RLLSPAGSSGAPASPACS(0.103)S(0.103)PPS(0.397)S(0.397)EFMDVN 87.196 8.78E-09 0 633.23 583.2 614.22 832.52 616.83 502.43 592.23 780.89 609.51 745.28 TRUE FALSE 642.0971737 646.8757483 459.1525644 779.1258934 700.852689 591.528906 704.6025509 714.5485203 668.0561589 593.3915269 1.082080118 1.090133106 0.773776745 1.31300475 1.181096556 0.996861059 1.187415928 1.204177154 1.125826926 1 9.212840516 -6.274360041 24.99150288 1.149779064 0.99281028 0.27508814 0.119919578 1023.309061 1979310.743 0.03365416 0.050273126 5.32E-07 6.274360041 -0.156968784 RLNECIS(ph)PVANEMNHLPAHSHDLQR ddPTM_K562_Paclitaxel_30min_R1 3 RLNECISPVANEMNHLPAHSHDLQR 25 1 P23497-2;P23497-3;P23497;P23497-4;P23497-5 P23497-2 SP100 Nuclear autoantigen Sp-100 1 RLNECIS(0.978)PVANEMNHLPAHS(0.022)HDLQR;RLNECIS(1)PVANEMNHLPAHSHDLQR;RLNECIS(0.999)PVANEMNHLPAHS(0.001)HDLQR 115.02 1.81E-08 141767000 2023.44 1878.19 2105.33 1977.64 1851.49 1653.15 1782.19 2319.98 2283.28 2196.64 TRUE FALSE 2051.774403 2083.257136 1573.813403 1850.803022 2103.694284 1946.312941 2120.351249 2122.883218 2502.599246 1748.963562 1.173137307 1.191138101 0.899854884 1.058228463 1.202823392 1.112837902 1.212347298 1.213794995 1.430904165 1 10.77228452 -7.524283386 1.326024883 1.236954895 1.087350684 0.141736575 0.126603811 0.746310436 2.671958754 0.069308662 0.04988311 2.99E-08 7.524283386 -0.149604211 RLNHS(ph)PPQSSSR ddPTM_K562_Paclitaxel_30min_R1 2 RLNHSPPQSSSR 12 1 A0A087X0H9;Q5T8P6-3;Q5T8P6-2;Q5T8P6 A0A087X0H9 RBM26 RNA-binding protein 26 1 RLNHS(0.959)PPQS(0.026)S(0.015)S(0.001)R;RLNHS(0.57)PPQS(0.281)S(0.143)S(0.006)R 112.62 0.0030479 31450000 3943.8 3451.1 4469.7 3979.1 4073.8 3428.4 3901.8 3942.7 4098.2 4477 TRUE FALSE 3999.025368 3827.902769 3341.268954 3723.898336 4628.72053 4036.378603 4642.146181 3607.743025 4491.850421 3564.584943 1.121876861 1.073870543 0.937351475 1.044693392 1.298530013 1.132355847 1.302296412 1.012107464 1.260132805 1 11.79951838 -6.615858836 13.7880155 1.173131385 1.037940487 0.237208218 0.107702413 0.99537174 142.9141657 0.030264359 0.039070637 2.42E-07 6.615858836 -0.135190897 RLNQS(ph)AENGSSLPSAASSCAEAR ddPTM_K562_Paclitaxel_30min_R1 1 RLNQSAENGSSLPSAASSCAEAR 23 1 Q8NB90-3;Q8NB90-2;Q8NB90 Q8NB90-3 SPATA5 Spermatogenesis-associated protein 5 1 RLNQS(1)AENGSSLPSAASSCAEAR 103.14 4.97E-05 12108000 1367.7 1577.2 1854.1 1435.6 1617.9 1725.1 1313.3 1889.7 1703.6 1819.5 TRUE FALSE 1386.85202 1749.40403 1386.009524 1343.527042 1838.285371 2031.022263 1562.491819 1729.15819 1867.238392 1448.684901 0.957317922 1.207580771 0.956736363 0.927411503 1.268933893 1.401976552 1.07855878 1.193605448 1.28891962 1 10.50052812 -6.769439914 24.99785279 1.218506198 1.02224691 0.353526504 0.126871005 200.4767116 626392.425 0.039188237 0.045214071 1.70E-07 6.769439914 -0.196259288 RLNVWDL ddPTM_K562_Paclitaxel_30min_R1 2 RLNVWDL 7 1 Q5JP01 Q5JP01 RBBP7 0 ; 107.55 0.0061013 17962100 12243.3 11702.4 14178.6 14373.3 11402.7 12153.2 12057.7 12264.5 12093.6 12015 FALSE TRUE 12414.74397 12980.10761 10599.03707 13451.46087 12955.94079 14308.39938 14345.58563 11222.55417 13255.24432 9566.336405 1.297753231 1.356852515 1.107951532 1.406124592 1.354326279 1.495703138 1.499590337 1.173129785 1.385613442 1 13.22375081 -10.20761623 1.05297569 0.995605607 1.3442793 0.42658562 0.118599988 18.15800831 14.36258274 0.475717131 0.037206143 6.20E-11 10.20761623 0.348673692 RLPDAHSDYAR ddPTM_K562_Paclitaxel_30min_R1 2 RLPDAHSDYAR 11 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 0 ; 147.74 0.00014741 22105000 1743.01 1638.2 2202.1 2110.1 1673.13 1684.66 1740.52 2117.9 1850.86 2294.19 FALSE TRUE 1767.417518 1817.064216 1646.15262 1974.76763 1901.038632 1983.410797 2070.774584 1937.971175 2028.643373 1826.632819 0.967582264 0.994761617 0.901195141 1.081097203 1.040733864 1.085828951 1.133656728 1.060952785 1.110591769 1 10.83497094 -6.278507434 24.77736326 1.077489851 0.95853787 0.638838716 0.040797444 419.3151224 608710.4334 0.011171032 0.016617926 5.27E-07 6.278507434 -0.118951981 RLQSIGTENTEENRR ddPTM_K562_Paclitaxel_30min_R1 2 RLQSIGTENTEENRR 15 2 H3BQN4;J3KPS3;P04075;P04075-2;H3BMQ8;H3BUH7;H3BR04;H3BPS8 H3BQN4 ALDOA Fructose-bisphosphate aldolase;Fructose-bisphosphate aldolase A 0 ; 109.16 0.0013014 116581000 893.02 977.12 1252.8 753.78 862.81 913.34 924.96 1076.32 1350.89 1130.49 FALSE TRUE 905.5250352 1083.805266 936.5151456 705.4359246 980.3393295 1075.308025 1100.466331 984.8798978 1480.64902 900.0955175 1.006032157 1.204100282 1.040461959 0.783734516 1.08915033 1.194659905 1.222610612 1.09419487 1.644990995 1 9.813934297 -7.2522888 3.083643817 1.242278318 1.017574503 0.248082114 0.183241942 0.387013828 7.541448437 0.066397015 0.062169197 5.59E-08 7.2522888 -0.224703814 RLS(ph)AGLYR ddPTM_K562_Paclitaxel_30min_R1 1 RLSAGLYR 8 1 H0Y4C5;B8ZZS2;Q13506-2;Q13506 H0Y4C5 NAB1 NGFI-A-binding protein 1 1 RLS(1)AGLYR 73.887 0.022836 10167000 1141.7 1331.4 1630.4 1457.2 1191.3 1221.4 1381.1 1260.4 1110.9 1442.4 TRUE FALSE 1157.687322 1476.766755 1218.785355 1363.741714 1353.575229 1437.998141 1643.156515 1153.321153 1217.606909 1148.438088 1.008053751 1.285891481 1.061254732 1.18747517 1.178622725 1.252133794 1.430775008 1.004251918 1.060228602 1 10.16545737 RLS(ph)AQGQAISVVGSLSSMSPLEEEAPQAK ddPTM_K562_Paclitaxel_30min_R1 1 RLSAQGQAISVVGSLSSMSPLEEEAPQAK 29 1 Q92797;M0R3C7;A0A087WUE9;Q92797-2 Q92797 SYMPK Symplekin 1 RLS(0.98)AQGQAIS(0.018)VVGS(0.002)LSSMSPLEEEAPQAK 64.574 0.00055057 8732300 1591.1 1290 1865 1607.2 1530.9 1380.4 1276.3 1525 1459.7 1584.6 TRUE FALSE 1613.380309 1430.846562 1394.157684 1504.121386 1739.434498 1625.194558 1518.471262 1395.441731 1599.910707 1261.65765 1.278778208 1.134100493 1.105020592 1.192178707 1.378689772 1.288142277 1.203552534 1.106038339 1.268102093 1 10.30110477 -11.43071567 6.391485951 0.999950847 1.213868581 0.376108975 0.083816589 6.36E-05 5.66E-06 0.087893886 0.021312511 3.71E-12 11.43071567 0.213917735 RLS(ph)DEHEPEQR ddPTM_K562_Paclitaxel_30min_R1 1 RLSDEHEPEQR 11 1 Q9UK59-2;Q9UK59 Q9UK59-2 DBR1 Lariat debranching enzyme 1 RLS(1)DEHEPEQR 73.386 0.020517 2327100 812.92 824.53 924.43 1012.3 1021 763.7 788.48 991.12 703.23 1335.1 TRUE FALSE 824.3033881 914.5549738 691.0462133 947.3756089 1160.077486 899.1314721 938.0899639 906.9181696 770.7783836 1063.005887 0.775445741 0.860347986 0.650086911 0.891223295 1.091318025 0.845838657 0.882488023 0.853163826 0.725093241 1 10.05393387 -6.471770937 24.2963287 0.898078959 0.771608181 0.269697103 0.102615637 383.6259218 182372.6437 0.029641187 0.043964171 3.37E-07 6.471770937 -0.126470777 RLS(ph)EQLAHTPTAFK ddPTM_K562_Paclitaxel_30min_R1 1 RLSEQLAHTPTAFK 14 1 F8W860;A0A0B4J1S8;Q9UBF8-3;Q9UBF8-2;Q9UBF8 F8W860 PI4KB Phosphatidylinositol 4-kinase beta 1 RLS(1)EQLAHTPTAFK 116.61 0.0011997 20045000 2785.6 2901.5 5079.2 3836.4 3077.5 3255.2 2845.7 4955.3 2358.2 6284 TRUE FALSE 2824.606994 3218.295582 3796.893141 3590.350475 3496.707603 3832.464015 3385.656719 4534.316335 2584.715647 5003.317351 0.564546839 0.643232351 0.758875137 0.717593993 0.698877836 0.765984595 0.676682385 0.906261989 0.51660038 1 12.28866925 -15 0.206587744 2.343723952 0.661249506 0.419384008 0.10509861 138.4922267 1.377641708 77.451615 0.222303973 1.00E-15 15 -1.682474446 RLS(ph)ESQLSFR ddPTM_K562_Paclitaxel_30min_R1 4 RLSESQLSFR 10 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 RLS(1)ESQLSFR;RLS(0.966)ES(0.034)QLSFR;RLS(0.999)ES(0.001)QLSFR;RLS(0.997)ES(0.003)QLSFR 140.01 0.00057912 352504100 4344.74 4043.48 4602.89 4200.54 3992.66 4424.33 4390.55 5072.75 4244.66 5503.07 TRUE FALSE 4405.579765 4484.960821 3440.833492 3931.136165 4536.527888 5208.922805 5223.633942 4641.788224 4652.378559 4381.541313 1.0054863 1.023603454 0.785302077 0.897203948 1.035372615 1.188833434 1.192190959 1.059396202 1.061813236 1 12.09722275 -6.945385568 4.490433397 1.110490765 0.925946783 0.495182776 0.081703341 0.177154258 7.492094989 0.027861014 0.031382397 1.13E-07 6.945385568 -0.184543982 RLS(ph)GSSLCSGSWVSADGFLR ddPTM_K562_Paclitaxel_30min_R1 1 RLSGSSLCSGSWVSADGFLR 20 1 O75400-3;O75400;H0YG38;F5H578 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 RLS(0.769)GS(0.208)S(0.023)LCSGSWVSADGFLR 71.524 0.0063135 26051000 573.2 629.09 770.14 699.58 663.77 608.78 668.94 812.28 698.84 780.42 TRUE FALSE 581.2265685 697.7761736 575.708632 654.71207 754.1867117 716.7385853 795.8678729 743.2717439 765.9667045 621.3699756 0.935395322 1.122964097 0.926515047 1.053659005 1.213748236 1.1534812 1.280827694 1.196182264 1.232706334 1 9.279308722 -6.658414309 4.408872254 1.192992659 1.005360093 0.486462048 0.085961793 0.168838846 5.761162827 0.024329588 0.031588882 2.20E-07 6.658414309 -0.187632566 RLS(ph)LPGLLSQVS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 RLSLPGLLSQVSPR 14 1 Q96Q42-3;Q96Q42 Q96Q42-3 ALS2 Alsin 2 RLS(1)LPGLLS(0.396)QVS(0.604)PR 93.729 0.02822 17105000 2224.6 2201.5 2644.3 2451.5 2266.3 2727.9 2446.9 2722.1 2289.9 3061 TRUE FALSE 2255.751263 2441.867215 1976.713761 2294.271763 2575.008429 3211.654763 2911.186501 2490.840614 2509.855127 2437.16652 0.925563044 1.001928754 0.811070456 0.941368488 1.056558265 1.317782243 1.194496346 1.022023154 1.029825047 1 11.25098911 -6.832008116 3.853814932 1.124903137 0.916394574 0.458069244 0.09849896 0.206082077 6.036031849 0.033394702 0.039300589 1.47E-07 6.832008116 -0.208508563 RLS(ph)LPGQLGALTSQPLHR ddPTM_K562_Paclitaxel_30min_R1 1 RLSLPGQLGALTSQPLHR 18 1 Q12809-7;Q12809-4;Q12809;Q12809-2 Q12809-7 KCNH2 Potassium voltage-gated channel subfamily H member 2 1 RLS(1)LPGQLGALTSQPLHR 136.36 1.97E-09 308550000 2100.2 2314.8 2693.5 2576.8 2101.2 2248 2256.4 2691.3 2396 2691.2 TRUE FALSE 2129.60928 2567.537692 2013.492612 2411.535581 2387.419014 2646.651237 2684.540121 2462.657266 2626.146506 2142.731963 0.993875723 1.198254255 0.93968478 1.125449017 1.114193961 1.235176066 1.252858578 1.149307197 1.225606633 1 11.06523568 -6.824845854 2.310758453 1.185123095 1.059667443 0.229439457 0.092823888 0.39352023 4.303308982 0.029763539 0.036431174 1.50E-07 6.824845854 -0.125455652 RLS(ph)LTLR ddPTM_K562_Paclitaxel_30min_R1 1 RLSLTLR 7 1 Q00537-2;Q00537;F8VUX2;F8W1S5;F8VZY6;F8VQZ9 Q00537-2 CDK17 Cyclin-dependent kinase 17 1 RLS(0.918)LT(0.082)LR 70.399 0.030457 15554000 887.5 1033.3 958.97 800.66 820.33 1192 909.11 1073.3 718.15 1110 TRUE FALSE 899.9277382 1146.119188 716.8661631 749.3092512 932.0728343 1403.384463 1081.608877 982.1164657 787.1315163 883.7813907 1.018269617 1.296835621 0.811135164 0.847844568 1.054641843 1.587931674 1.223842104 1.111266288 0.890640519 1 9.787545743 -7.014487575 24.95423289 1.189929084 0.99579448 0.121919086 0.209406264 1334.789923 2299119.702 0.071869464 0.074559959 9.67E-08 7.014487575 -0.194134604 RLS(ph)NLPTVDPIAVCHELYNTIR ddPTM_K562_Paclitaxel_30min_R1 2 RLSNLPTVDPIAVCHELYNTIR 22 1 C9JCJ2;C9J053;C9JQF1;C9JPI5;E7EVG2;Q86U86-6;Q86U86-5;Q86U86-4;Q86U86-7;Q86U86-3;Q86U86-9;Q86U86-2;Q86U86-8;Q86U86 C9JCJ2 PBRM1 Protein polybromo-1 1 RLS(0.974)NLPT(0.026)VDPIAVCHELYNTIR;RLS(0.771)NLPT(0.229)VDPIAVCHELYNTIR 133.94 1.20E-11 25896000 3504.7 2582.14 3306.1 3184.14 2320.71 2515.59 3389.4 3968.5 2410.11 4883.8 TRUE FALSE 3553.776613 2864.066777 2471.434166 2979.923512 2636.829992 2961.694566 4032.520956 3631.351154 2641.611834 3888.478879 0.913924628 0.73655197 0.635578652 0.766346843 0.678113492 0.761658905 1.037043297 0.933874471 0.679343238 1 11.92499019 -7.607563188 9.510774717 0.906769099 0.738511022 0.341335507 0.11131955 0.376772212 38.92247493 0.042679403 0.033025002 2.47E-08 7.607563188 -0.168258077 RLS(ph)PPFPLEPAQK ddPTM_K562_Paclitaxel_30min_R1 1 RLSPPFPLEPAQK 13 1 E9PPH6;Q8NEV8-2;Q8NEV8 E9PPH6 EXPH5 Exophilin-5 1 RLS(1)PPFPLEPAQK 103.01 0.0042752 6865400 2410.7 1989.4 3288.2 2373.7 2203.8 1846 1958.9 2452.3 2224.7 2872.7 TRUE FALSE 2444.457238 2206.60942 2458.053242 2221.461506 2503.994871 2173.362181 2330.591049 2243.961808 2438.392375 2287.242163 1.068735649 0.96474674 1.074679927 0.971240187 1.094765964 0.950210789 1.018952469 0.981077493 1.066084044 1 11.1593934 -7.278877191 24.95229993 1.003062783 1.029620691 0.093146769 0.047886705 2289.627965 3276284.281 0.015641465 0.013821379 5.26E-08 7.278877191 0.026557909 RLS(ph)PPSSSAASSYSFSDLNSTR ddPTM_K562_Paclitaxel_30min_R1 4 RLSPPSSSAASSYSFSDLNSTR 22 1 P50402 P50402 EMD Emerin 1 RLS(0.922)PPS(0.032)S(0.045)S(0.001)AASSYSFSDLNSTR;RLS(0.855)PPS(0.099)S(0.038)S(0.009)AASSYSFSDLNSTR;RLS(0.739)PPS(0.209)S(0.042)S(0.01)AASSYSFSDLNSTR;RLS(0.871)PPS(0.027)S(0.075)S(0.027)AAS(0.001)SYSFSDLNSTR 80.002 0.00093752 115097000 3205.41 2695.18 3709.86 3411.24 3004.69 2757.43 2981.98 3691.12 2007.85 3599.74 TRUE FALSE 3250.29563 2989.448867 2773.25996 3192.458335 3413.979648 3246.421494 3547.795138 3377.536317 2200.712964 2866.111012 1.134043872 1.043033174 0.967603819 1.11386416 1.191154018 1.132692167 1.23784289 1.178438763 0.767839401 1 11.48487877 -8.752460357 24.99994929 0.883919677 1.122740308 0.541162307 0.088716891 135.8366471 378212.1507 0.065792088 0.024067807 1.77E-09 8.752460357 0.238820632 RLS(ph)PQPQIR ddPTM_K562_Paclitaxel_30min_R1 2 RLSPQPQIR 9 1 A0A0A0MR27;J3QT39;Q49A88-5;Q49A88-6;Q49A88;C9JU82;Q49A88-2;Q49A88-3 A0A0A0MR27 CCDC14 Coiled-coil domain-containing protein 14 1 RLS(1)PQPQIR;RLS(1)PQPQIR 80.014 0.020843 58008000 1136.07 1023.38 1307.83 1183 1061.91 1043.73 1148.24 1037.1 1433.99 1137.24 TRUE FALSE 1151.978485 1135.116089 977.6521415 1107.127675 1206.56012 1228.820861 1366.112546 948.9918816 1571.731147 905.4698638 1.272243872 1.253621059 1.079718034 1.222710682 1.332523774 1.357108513 1.508733311 1.048065672 1.735818286 1 9.822522815 -6.741351859 4.452657304 1.344054135 1.198968065 0.080158657 0.202347788 0.472968919 22.05795699 0.058121076 0.072456782 1.81E-07 6.741351859 -0.14508607 RLS(ph)QPESAEK ddPTM_K562_Paclitaxel_30min_R1 3 RLSQPESAEK 10 1 S4R3H4;E7EQT4;Q9UKV3-5;Q9UKV3 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 RLS(1)QPESAEK;RLS(1)QPESAEK;RLS(0.996)QPES(0.004)AEK 134.61 0.0018963 278138000 7991.5 6900.2 12870.8 8705 6226.19 6281.7 6004.8 8341.5 5615.4 9379.6 TRUE FALSE 8103.405656 7653.587171 9621.407356 8146.700262 7074.302488 7395.671296 7144.179453 7632.837509 6154.78426 7468.032371 1.085079075 1.024846545 1.288345695 1.090876399 0.947277962 0.990310557 0.956634773 1.02206808 0.824150721 1 12.86651247 -6.683212372 4.76889781 0.95945093 1.131562503 0.511884322 0.079704744 0.174363408 7.201259745 0.02390267 0.03079557 2.07E-07 6.683212372 0.172111573 RLS(ph)QRPTPEELEQR ddPTM_K562_Paclitaxel_30min_R1 1 RLSQRPTPEELEQR 14 2 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 RLS(0.854)QRPT(0.146)PEELEQR 90.498 0.006848 27983000 1135 865.88 800.54 920.83 843.89 882.75 950.34 1132.5 1217.2 1822.8 TRUE FALSE 1150.893502 960.4197066 598.433776 861.7720853 958.8421052 1039.293318 1130.662054 1036.287056 1334.117499 1451.312359 0.79300193 0.661759476 0.41233975 0.593788153 0.660672459 0.716105883 0.779061824 0.714034473 0.919249044 1 10.50314234 -8.549392124 0.660049233 1.001435804 0.61053698 0.61967407 0.096374817 0.486590715 0.459382945 0.099724498 0.046543238 2.82E-09 8.549392124 -0.390898824 RLS(ph)QSDEDVIR ddPTM_K562_Paclitaxel_30min_R1 2 RLSQSDEDVIR 11 1 H0Y917;A0A499FIZ0;Q9H7D7-3;Q9H7D7-4;Q9H7D7-2;Q9H7D7 H0Y917 WDR26 WD repeat-containing protein 26 1 RLS(0.949)QS(0.051)DEDVIR;RLS(1)QSDEDVIR 121.42 0.0015708 59439000 1529.34 1528.94 2251.81 1830.16 1996.77 1837.46 1718.87 1936.22 1755.02 2111.94 TRUE FALSE 1550.755478 1695.87484 1683.312715 1712.781729 2268.76388 2163.307732 2045.016609 1771.726025 1923.597513 1681.525469 0.922231335 1.008533544 1.001062872 1.018588039 1.349229567 1.286514996 1.21616749 1.0536421 1.143959784 1 10.71555492 -6.581637064 11.89232303 1.185252894 0.985293974 0.468055478 0.098086472 0.641917065 128.1387359 0.030428054 0.039286573 2.62E-07 6.581637064 -0.19995892 RLS(ph)STSLASGHSVR ddPTM_K562_Paclitaxel_30min_R1 2 RLSSTSLASGHSVR 14 1 M0QZ82;Q9BZL6-2;Q9BZL6;Q9BZL6-3 M0QZ82 PRKD2 Serine/threonine-protein kinase D2 1 RLS(0.567)S(0.415)T(0.018)SLASGHSVR;RLS(0.847)S(0.132)T(0.022)SLASGHSVR 125.61 0.00025855 116837000 1146.07 979.25 1103.22 1142.73 825.74 914.7 914.72 1096.29 801.25 1216.6 TRUE FALSE 1162.118516 1086.167827 824.6984665 1069.440412 938.2197679 1076.909202 1088.283345 1003.153322 878.2136426 968.6562522 1.199722309 1.12131401 0.851384033 1.104045331 0.968578653 1.111755795 1.123497982 1.035613325 0.906630851 1 9.919840976 -5.532210181 24.99863343 1.020690226 1.18012031 0.342718498 0.084400955 190.0158918 509047.1172 0.021494727 0.05702713 2.94E-06 5.532210181 0.159430084 RLS(ph)THSPFR ddPTM_K562_Paclitaxel_30min_R1 1 RLSTHSPFR 9 1 P11171;P11171-7;A0A2R8YCW8;A0A2R8Y5G2;A0A2R8Y5Z6;P11171-2;A0A2U3TZH6;P11171-3;P11171-4;A0A3B3IU06;A0A2R8YD30;P11171-5;A0A2R8Y570;A0A2R8Y6G5;A0A2R8Y420;A0A3B3IUD6;A0A2R8YFR9;Q4VB86;A0A2R8Y7N0;A0A2R8Y7Y3;A0A2R8Y4N6;P11171-6;A0A2R8Y5C8;A0A2R8Y6D0;A0A1B0GWG0;A0A2R8Y783 P11171 EPB41 Protein 4.1 1 RLS(0.879)T(0.121)HSPFR 91.123 0.0096908 51090000 434.01 536.78 748.53 759.4 528.8 735.36 756.23 1218.1 857.95 1275.1 TRUE FALSE 440.087479 595.3874557 559.5543438 710.6954829 600.8315127 865.765771 899.7206947 1114.614802 940.3599309 1015.23392 0.433483821 0.58645347 0.551158046 0.700031263 0.591815837 0.85277467 0.886220089 1.097889639 0.92624952 1 9.987596462 -7.356034894 0.892302694 1.0260134 0.528539935 0.877100782 0.07321014 0.181419355 0.306674596 0.045869885 0.038658656 4.41E-08 7.356034894 -0.497473465 RLS(ph)TSPDVIQGHQPR ddPTM_K562_Paclitaxel_30min_R1 3 RLSTSPDVIQGHQPR 15 1 Q9Y385 Q9Y385 UBE2J1 Ubiquitin-conjugating enzyme E2 J1 1 RLS(0.726)T(0.234)S(0.04)PDVIQGHQPR;RLS(0.983)T(0.008)S(0.008)PDVIQGHQPR;RLS(0.589)T(0.205)S(0.205)PDVIQGHQPR 142.84 2.24E-06 569236700 2464.47 2416.39 3004.15 2996.7 2397.39 2350.63 3084.89 3299.59 2621.02 3647.8 TRUE FALSE 2498.980184 2680.219632 2245.715178 2804.505075 2723.955106 2767.481226 3670.231773 3019.269234 2872.780682 2904.376358 0.860418856 0.922821047 0.77321769 0.965613519 0.937879521 0.952865912 1.263690142 1.039558536 0.989121356 1 11.5040127 -7.537171739 24.99994359 1.080944662 0.896612459 0.496924327 0.085895013 200.0947425 349983.5385 0.0331766 0.025709353 2.90E-08 7.537171739 -0.184332203 RLS(ph)VYR ddPTM_K562_Paclitaxel_30min_R1 1 RLSVYR 6 1 P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;P29590-12;P29590-13;P29590-11;P29590-14;P29590-10;P29590-4;H3BT57 P29590-2;P29590-4 PML Protein PML 1 RLS(1)VYR 73.665 0.029329 6129000 816.34 983.03 1168.4 938.63 977.05 814.8 930.47 751.81 932.38 1042.6 TRUE FALSE 827.7712786 1090.36054 873.4229694 878.430473 1110.140752 959.2933396 1107.021825 687.9390478 1021.939265 830.1175477 0.99717357 1.313501374 1.052167819 1.058200101 1.33732958 1.155611446 1.33357237 0.828724859 1.231077777 1 9.697171832 -8.252525523 24.98247986 1.022425981 1.179210726 0.198087621 0.145910811 997.5719078 2795861.384 0.066168874 0.037513536 5.59E-09 8.252525523 0.156784745 RLS(ph)YNTASNK ddPTM_K562_Paclitaxel_30min_R1 2 RLSYNTASNK 10 1 P49207 P49207 RPL34 60S ribosomal protein L34 1 RLS(0.973)YNT(0.027)ASNK;RLS(0.873)YNT(0.127)ASNK 121.56 0.0048106 65420000 7704.2 7707.4 15190 10490.4 7207.1 5775.4 5612.8 6758.5 5863.5 7241.7 TRUE FALSE 7812.082569 8548.919997 11355.09663 9817.592697 8188.829037 6799.586099 6677.799499 6184.32324 6426.715374 5765.837565 1.354891199 1.482684849 1.969375048 1.70271753 1.42023235 1.179288529 1.158166428 1.072580205 1.114619568 1 12.49331448 -7.145519868 2.276954757 1.099927338 1.639176384 0.72007628 0.154360187 0.180848836 1.840510947 0.062789487 0.062501655 7.15E-08 7.145519868 0.539249046 RLSELLR ddPTM_K562_Paclitaxel_30min_R1 2 RLSELLR 7 1 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ; 98.299 0.017452 17231500 2384.3 2447.3 2795.06 2374.32 2408.67 2264.8 2166.7 2598.8 2402 2947.5 FALSE TRUE 2417.687556 2714.50449 2089.412534 2222.041742 2736.771633 2666.430481 2577.820014 2378.015719 2632.722832 2346.797882 1.030206979 1.156684396 0.890324876 0.946839845 1.166172705 1.136199458 1.098441427 1.013302312 1.121836206 1 11.19647788 -6.756580494 24.99934087 1.092789974 1.008512695 0.207447332 0.079542894 211.0754829 1085992.428 0.024955365 0.031195812 1.75E-07 6.756580494 -0.08427728 RLSGDLSSMPGPGT(ph)LS(ph)VR ddPTM_K562_Paclitaxel_30min_R1 1 RLSGDLSSMPGPGTLSVR 18 1 A0A0C4DG26;Q9NP71-6;Q9NP71-4;Q9NP71-2;Q9NP71-3;Q9NP71 A0A0C4DG26 MLXIPL Carbohydrate-responsive element-binding protein 2 RLS(0.005)GDLS(0.013)S(0.201)MPGPGT(0.781)LS(1)VR 92.38 0.0011018 5398300 173.45 173.17 209.69 52.382 0 177.24 144.92 249.04 138.91 165.08 TRUE FALSE 175.8788351 192.0772862 156.7511661 49.02245297 0 208.6710254 172.4178135 227.8824975 152.2529262 131.4366054 1.338126731 1.461368282 1.192599015 0.372974126 0 1.587617276 1.31179448 1.733782586 1.158375368 1 7.038223315 RLSGSS(ph)LCSGSWVSADGFLR ddPTM_K562_Paclitaxel_30min_R1 1 RLSGSSLCSGSWVSADGFLR 20 1 O75400-3;O75400;H0YG38;F5H578 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 1 RLS(0.042)GS(0.053)S(0.901)LCS(0.002)GS(0.002)WVSADGFLR 113.81 0.00021137 20304000 802.18 916.55 976.85 837.39 705.52 718.87 653.68 1158.9 742.85 920.28 TRUE FALSE 813.4129949 1016.622029 730.232136 783.6835534 801.6237686 846.3515011 777.7123676 1060.444211 814.2040616 732.7264308 1.110118266 1.387451013 0.996595872 1.06954454 1.094028733 1.155071614 1.06139527 1.447258031 1.111197887 1 9.517130847 RLSLPGLLSQVS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 RLSLPGLLSQVSPR 14 1 Q96Q42-3;Q96Q42 Q96Q42-3 ALS2 Alsin 1 RLSLPGLLS(0.002)QVS(0.998)PR;RLSLPGLLSQVS(1)PR 128.1 0.00014632 21885200 3717.9 3846.6 4387.9 3882.2 3806.5 3473.1 3962.8 4337 4665.5 4598.3 TRUE FALSE 3769.962071 4266.584796 3280.120376 3633.213068 4325.009745 4089.00552 4714.720613 3968.544779 5113.642121 3661.163936 1.029716816 1.165362948 0.895922836 0.992365579 1.181320973 1.116859445 1.287765502 1.083957137 1.396725798 1 11.83808666 -6.768690533 24.70018938 1.184423467 1.022242162 0.293200224 0.119088411 175.5750943 598074.2074 0.035176313 0.040712834 1.70E-07 6.768690533 -0.162181305 RLSRVY(ph)TNDRMHR ddPTM_K562_Paclitaxel_30min_R1 1 RLSRVYTNDRMHR 13 3 Q1MSJ5-1;Q1MSJ5;Q1MSJ5-2;F2Z2M5 Q1MSJ5-1 CSPP1 Centrosome and spindle pole-associated protein 1 1 RLS(0.019)RVY(0.795)T(0.187)NDRMHR 58.754 0.023439 8222600 424.23 501.63 793.62 492.7 395.21 309.06 455.05 512.11 415.91 631.71 TRUE FALSE 430.1705289 556.3996598 593.2608156 461.1004272 449.044293 363.8674516 541.393362 468.603059 455.8600138 502.9671552 0.855265646 1.10623458 1.179521982 0.916760513 0.89279049 0.723441775 1.076399038 0.931677256 0.906341516 1 8.974320382 -6.372251574 13.13130381 0.915152603 1.052910702 0.203861646 0.11346418 1.215418368 138.0339874 0.032413372 0.048077933 4.24E-07 6.372251574 0.137758099 RLSS(ph)QDVLR ddPTM_K562_Paclitaxel_30min_R1 2 RLSSQDVLR 9 1 A0A3B3ITI3;A0A3B3IS53;A0A3F2YNX6;Q92794 A0A3B3ITI3 KAT6A Histone acetyltransferase KAT6A 1 RLS(0.048)S(0.952)QDVLR;RLS(0.035)S(0.965)QDVLR 107.34 0.0045624 18708700 1958.05 2104.38 2032.11 1997.21 1607.21 1654.32 1755.74 1788.81 1813.25 2388.76 TRUE FALSE 1985.468741 2334.143325 1519.078698 1869.11789 1826.139212 1947.690424 2088.882499 1636.839425 1987.420764 1901.929401 1.043923471 1.227250246 0.798704041 0.982748302 0.960150893 1.024060317 1.09829655 0.860620496 1.044949809 1 10.89324798 -5.742118923 24.9999998 0.972659516 1.135586809 0.339011976 0.091801997 267.8370776 346566.5528 0.022561532 0.059495866 1.81E-06 5.742118923 0.162927293 RLSS(ph)T(ph)S(ph)SEETQLFHIPR ddPTM_K562_Paclitaxel_30min_R1 1 RLSSTSSEETQLFHIPR 17 1 Q8N271-3;Q8N271-2;Q8N271 Q8N271-3 PROM2 Prominin-2 3 RLS(0.284)S(0.79)T(0.926)S(0.997)S(0.001)EET(0.002)QLFHIPR 55.575 0.027935 86530000 0 0 119.04 0 0 0 0 0 0 0 TRUE FALSE 0 0 88.98687973 0 0 0 0 0 0 0 0 RLSTHS(ph)PFR ddPTM_K562_Paclitaxel_30min_R1 1 RLSTHSPFR 9 1 P11171;P11171-7;A0A2R8YCW8;A0A2R8Y5G2;A0A2R8Y5Z6;P11171-2;A0A2U3TZH6;P11171-3;P11171-4;A0A3B3IU06;A0A2R8YD30;P11171-5;A0A2R8Y570;A0A2R8Y6G5;A0A2R8Y420;A0A3B3IUD6;A0A2R8YFR9;Q4VB86;A0A2R8Y7N0;A0A2R8Y7Y3;A0A2R8Y4N6;P11171-6;A0A2R8Y5C8;A0A2R8Y6D0;A0A1B0GWG0;A0A2R8Y783 P11171 EPB41 Protein 4.1 1 RLST(0.007)HS(0.993)PFR 73.082 0.026698 5401700 935.88 1056.5 1420.1 1274 933.77 959 1014.9 1329.1 1146 1741.7 TRUE FALSE 948.9852074 1171.852243 1061.578191 1192.291342 1060.965283 1129.065185 1207.471977 1216.184659 1256.07842 1386.740584 0.684327854 0.845040707 0.765520389 0.859779656 0.765078411 0.8141863 0.870726646 0.877009495 0.905777501 1 10.43748221 -13.81774665 0.030027784 2.137587621 3.94E-12 0.739029606 0.042342877 592.6239915 1.636725959 83.84377422 39.89481168 1.52E-14 13.81774665 -2.137587621 RLTLEDLEDSWDR ddPTM_K562_Paclitaxel_30min_R1 4 RLTLEDLEDSWDR 13 1 Q6P2Q9;I3L3Z8 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 ;;; 219.84 1.16E-41 61949000 8019.9 8541.3 9751.8 10304.8 8084.7 7919.3 9580.4 10520.9 7952.5 11247.1 FALSE TRUE 8132.203344 9473.868019 7289.837481 9643.896251 9185.973015 9323.676663 11398.23089 9627.083876 8716.373158 8954.934846 0.90812535 1.057949408 0.814058126 1.076936507 1.025800095 1.041177498 1.272843531 1.075059064 0.973359752 1 13.12846722 -6.316709343 24.61856808 1.075433823 0.939834754 0.308504617 0.094602164 306.6341122 136581.3891 0.027052106 0.040124783 4.82E-07 6.316709343 -0.135599068 RMALS(ph)MIE ddPTM_K562_Paclitaxel_30min_R1 2 RMALSMIE 8 1 J3KQ07 J3KQ07 ANKMY1 1 RMALS(1)MIE;RMALS(1)MIE 71.296 0.02931 3537700 448.22 498.19 526.46 506.96 376.62 403.51 294.18 397.25 587.67 229.13 TRUE FALSE 454.4964629 552.584069 393.5486618 474.4458547 427.9220202 475.0668329 349.9991193 363.5011329 644.1183293 182.4331802 2.491303733 3.028966925 2.157220859 2.600655506 2.345637015 2.604059373 1.918505827 1.992516561 3.530708221 1 7.511224335 -11.28300635 4.277431069 0.998757173 2.48989071 0.495698584 0.45875371 168585576.6 4471.478516 2120659.823 0.107999373 5.21E-12 11.28300635 1.491133537 RMAS(ph)PPAPSPAPPAISPIIK ddPTM_K562_Paclitaxel_30min_R1 1 RMASPPAPSPAPPAISPIIK 20 1 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 RMAS(0.989)PPAPS(0.011)PAPPAISPIIK 79.445 0.0028013 3783400 1663.1 1534.3 2768 1964.8 1540.3 1318.8 1458.4 2165.6 2141.5 2199.9 TRUE FALSE 1686.388531 1701.820063 2069.184166 1838.786522 1750.114937 1552.670663 1735.123787 1981.618763 2347.200643 1751.559172 0.962792783 0.971602952 1.181338432 1.04979983 0.999175458 0.886450591 0.990616711 1.1313456 1.340063573 1 10.77442401 -8.390684725 4.518312998 1.188215738 1.00870754 0.303165846 0.104627689 0.262537475 8.37492147 0.062388332 0.028104724 4.07E-09 8.390684725 -0.179508199 RMDT(ph)EMEDLEEDLIVLPGKSHPKR ddPTM_K562_Paclitaxel_30min_R1 1 RMDTEMEDLEEDLIVLPGKSHPKR 24 3 H3BN63;Q86YC2 H3BN63 PALB2 Partner and localizer of BRCA2 1 RMDT(1)EMEDLEEDLIVLPGKSHPKR 46.771 0.029171 0 796.11 732.31 902.81 887.24 799.25 841.7 832.18 1035.5 917.44 750.33 TRUE FALSE 807.2579962 812.2660823 674.8844497 830.3363975 908.1213814 990.9636769 990.0818107 947.5278116 1005.564211 597.4123341 1.351257666 1.35964063 1.129679471 1.389888273 1.52009145 1.658759989 1.657283846 1.586053313 1.683199616 1 9.222583214 -6.672648894 3.230050446 1.563392501 1.284992423 0.208090132 0.196642602 0.30371045 6.312559708 0.057696046 0.0755006 2.12E-07 6.672648894 -0.278400078 RMEDEGGFPVPQENGQPES(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 RMEDEGGFPVPQENGQPESPR 21 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 RMEDEGGFPVPQENGQPES(1)PR;RMEDEGGFPVPQENGQPES(1)PR 112.55 3.52E-05 38707000 1877.75 1797.57 2680.1 2461.4 1933.37 2145.2 2197.8 2399.7 1705.18 2805.4 TRUE FALSE 1904.044293 1993.834772 2003.475608 2303.536821 2196.727726 2525.6211 2614.821077 2195.830507 1868.970158 2233.65794 0.852433248 0.892632097 0.896948262 1.031284504 0.983466486 1.130710775 1.170645259 0.983064805 0.836730694 1 11.12519255 -6.208912082 3.18162081 1.029335496 0.875076539 0.351967929 0.085721517 0.298259832 6.046676739 0.026611729 0.048505703 6.18E-07 6.208912082 -0.154258958 RMEEEQHHWDDR ddPTM_K562_Paclitaxel_30min_R1 2 RMEEEQHHWDDR 12 1 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 0 ; 86.288 0.0071931 9475900 1707.1 1490.45 1786.92 1778.56 1833.94 1582.89 1670.6 1686.79 1214.1 1898.05 FALSE TRUE 1731.004667 1653.182371 1335.789946 1664.491122 2083.753677 1863.593317 1987.587629 1543.486661 1330.71973 1511.226368 1.145430429 1.093934308 0.883911222 1.101417469 1.37884947 1.233166226 1.315215027 1.021347095 0.880556188 1 10.56150406 -8.510372832 20.22473255 0.943835209 1.160129168 0.337443856 0.129894016 60.53815442 97915.56083 0.086283792 0.037957283 3.09E-09 8.510372832 0.216293959 RMGESDDSILR ddPTM_K562_Paclitaxel_30min_R1 1 RMGESDDSILR 11 1 Q8WVC2;P63220 Q8WVC2 RPS21 40S ribosomal protein S21 0 137.01 0.0011661 41700000 899.13 999.21 1409.4 1017.7 875.42 770.23 943.87 1182.7 1248.6 1202.6 FALSE TRUE 911.7205941 1108.307127 1053.579539 952.4292771 994.667025 906.8194759 1122.964405 1082.222253 1368.533609 957.5094599 0.952179203 1.15748948 1.100333295 0.994694378 1.038806473 0.947060592 1.172797191 1.130247061 1.4292638 1 9.90314293 -7.896744567 6.858244676 1.19838684 1.039500933 0.289361538 0.115405385 0.274976659 15.998948 0.047134722 0.031665551 1.27E-08 7.896744567 -0.158885908 RMLS(ph)SSDAITQEFMDLR ddPTM_K562_Paclitaxel_30min_R1 2 RMLSSSDAITQEFMDLR 17 1 H3BPE1;H3BQK9;Q9UPN3;H0Y390;A0A590UJG2;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;A0A669KBB0;E9PLY5;E9PNZ4;A0A5F9ZGX0 H3BPE1 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 RMLS(0.862)S(0.134)S(0.004)DAITQEFMDLR;RMLS(0.938)S(0.061)S(0.001)DAITQEFMDLR 155.16 9.02E-08 29552000 2389 2810.1 2765.3 2661.9 2175.15 2657.1 2624.8 3401.8 3535.1 3681.7 TRUE FALSE 2422.453371 3116.916221 2067.165814 2491.177648 2471.442256 3128.299377 3122.842098 3112.795857 3874.66215 2931.367519 0.826390193 1.063297659 0.70518821 0.849834636 0.843102149 1.067180883 1.065319199 1.061892047 1.321793369 1 11.51735814 -7.354905435 3.230849092 1.113761262 0.858938138 0.540927046 0.113486426 0.20938746 4.191716393 0.042433516 0.037181502 4.42E-08 7.354905435 -0.254823124 RMNS(ph)TGGQTPR ddPTM_K562_Paclitaxel_30min_R1 1 RMNSTGGQTPR 11 1 Q96ST2;Q96ST2-3;Q96ST2-2;A0A1B0GW95 Q96ST2 IWS1 Protein IWS1 homolog 1 RMNS(0.896)T(0.102)GGQT(0.001)PR 95.264 0.0078665 934520 283.21 267.49 359.16 243.18 228.34 219.22 153.67 179.94 261.68 326.21 TRUE FALSE 287.1758138 296.6954628 268.485616 227.5835232 259.4437738 258.095589 182.8280803 164.6529738 286.8155332 259.7282229 1.105678122 1.142330469 1.033717526 0.876237171 0.99890482 0.993714068 0.70392073 0.633943327 1.104290978 1 8.02085898 -6.164498364 0.832492539 0.859002874 1.165683906 0.281953045 0.137648844 1.089662491 1.27219202 0.062294568 0.244218563 6.85E-07 6.164498364 0.306681032 RNDS(ph)GDHSDHMHYYQGK ddPTM_K562_Paclitaxel_30min_R1 1 RNDSGDHSDHMHYYQGK 17 1 E9PGM9;P78332-2;P78332;F8WCA5 E9PGM9 RBM6 RNA-binding protein 6 1 RNDS(0.952)GDHS(0.048)DHMHYYQGK 72.615 0.0086119 4582800 2508.6 1862.1 3131.4 2637.1 1872.4 1682.5 1740.8 2756.6 1900.2 3188.7 TRUE FALSE 2543.72814 2065.410375 2340.839341 2467.968209 2127.45258 1980.867752 2071.107712 2522.409624 2082.7227 2538.84119 1.001924874 0.813524841 0.922010936 0.972084516 0.837962055 0.780225151 0.815768911 0.993527927 0.820343828 1 11.30995444 -11.59794332 2.822875439 1.008587501 0.882565396 0.163474704 0.078544171 24913065.39 23508209.69 1580142.936 0.021473885 2.52E-12 11.59794332 -0.126022106 RNEES(ph)DDDLDFDIDLEDTGGDHQMN ddPTM_K562_Paclitaxel_30min_R1 1 RNEESDDDLDFDIDLEDTGGDHQMN 25 1 Q96MD7-1 Q96MD7-1 1 RNEES(1)DDDLDFDIDLEDTGGDHQMN 74.429 0.00019391 9406800 880.03 925.14 1201.6 1435.1 956.27 1013 1004.1 1187.4 1019.9 1129.6 TRUE FALSE 892.3531351 1026.149914 898.2412188 1343.059109 1086.530164 1192.641327 1194.622733 1086.522958 1117.865952 899.3868999 0.992179378 1.140943807 0.998726153 1.493305172 1.208078708 1.326060372 1.328263435 1.208070696 1.242919985 1 9.81279806 -6.225586435 24.99863468 1.270440424 1.053649137 0.38420669 0.12336759 580.5978316 404823.9893 0.031274781 0.054167277 5.95E-07 6.225586435 -0.216791287 RNGS(ph)PTPAGSLGGGAVATAGGPGSR ddPTM_K562_Paclitaxel_30min_R1 3 RNGSPTPAGSLGGGAVATAGGPGSR 25 1 Q6P1L5-2;Q6P1L5 Q6P1L5-2 FAM117B Protein FAM117B 1 RNGS(0.989)PT(0.011)PAGSLGGGAVATAGGPGSR;RNGS(0.874)PT(0.122)PAGS(0.004)LGGGAVATAGGPGSR;RNGS(0.499)PT(0.499)PAGS(0.002)LGGGAVATAGGPGSR 106.74 4.75E-06 59619400 3138.48 3530.29 4477.08 3821.86 3177.64 3395.58 2781.9 4078.39 3458.49 3901.91 TRUE FALSE 3182.428403 3915.739001 3346.785782 3576.743006 3610.488366 3997.738437 3309.751003 3731.905313 3790.693417 3106.6986 1.024376295 1.260418053 1.077280487 1.151300292 1.162162421 1.28681245 1.065359544 1.201244727 1.220167742 1 11.60116657 -5.229172405 23.44370442 1.163074903 1.024375705 0.178915923 0.085524892 10177.06731 7393907.774 0.019843979 2.617650218 5.90E-06 5.229172405 -0.138699198 RNLLEDDS(ph)DEEEDFFLRGPSGPR ddPTM_K562_Paclitaxel_30min_R1 2 RNLLEDDSDEEEDFFLRGPSGPR 23 2 O75379 O75379 VAMP4 Vesicle-associated membrane protein 4 1 RNLLEDDS(1)DEEEDFFLRGPSGPR;RNLLEDDS(1)DEEEDFFLRGPSGPR 66.261 0.0027695 68808000 1766.72 1911.6 2167.06 1562.25 1549.52 1613.3 1288.02 1781.98 3239.1 1934.11 TRUE FALSE 1791.459531 2120.314953 1619.958901 1462.054277 1760.590858 1899.396103 1532.415071 1630.589676 3550.230028 1539.93732 1.163332759 1.376883932 1.05196418 0.949424537 1.14328735 1.233424295 0.995115224 1.058867562 2.305438008 1 10.58865592 RNS(ph)AKGCENLNIVQDK ddPTM_K562_Paclitaxel_30min_R1 1 RNSAKGCENLNIVQDK 16 2 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 RNS(1)AKGCENLNIVQDK 130.09 2.10E-05 21061000 1455.1 1046.3 3234.5 1562.8 1195.7 758.09 748.55 1754.1 2131.9 2175.4 TRUE FALSE 1475.475889 1160.538572 2417.910471 1462.569003 1358.574583 892.5266174 890.5834548 1605.078256 2336.678521 1732.052286 0.851865675 0.670036685 1.39598007 0.844413887 0.784372732 0.515300043 0.514178159 0.926691572 1.349080821 1 10.75826677 -11.17518983 7.213070102 1.000000158 0.859021532 0.015794821 0.284899198 7.64E-07 8.76E-08 0.290446979 0.070443661 6.68E-12 11.17518983 -0.140978627 RNS(ph)EGSELSCTEGSLTSSLDSR ddPTM_K562_Paclitaxel_30min_R1 3 RNSEGSELSCTEGSLTSSLDSR 22 1 Q5T5U3;A0A087WW76;A0A452Q6Z5 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 RNS(0.999)EGS(0.001)ELSCTEGSLTSSLDSR;RNS(0.998)EGS(0.002)ELSCTEGSLTSSLDSR;RNS(0.956)EGS(0.043)ELS(0.001)CTEGSLTSSLDSR 127.1 5.32E-08 57598900 925.54 834.18 1027.84 785.6 697.93 673.93 595.04 877.29 843.11 1237.59 TRUE FALSE 938.5004155 925.2585934 768.3490798 735.2151322 792.9998821 793.4420231 707.9457337 802.7587386 924.0944826 985.3684787 0.952436003 0.938997556 0.779758128 0.746132181 0.804774964 0.80522367 0.718457865 0.814678728 0.93781616 1 9.944519511 -8.887153011 3.484659926 0.997223083 0.815631592 0.425958512 0.070648529 0.224319622 5.001820296 0.074808968 0.019989862 1.30E-09 8.887153011 -0.181591491 RNS(ph)FSENEK ddPTM_K562_Paclitaxel_30min_R1 3 RNSFSENEK 9 1 Q9HCG8 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 1 RNS(0.978)FS(0.022)ENEK;RNS(0.994)FS(0.006)ENEK;RNS(0.999)FS(0.001)ENEK 110.93 0.003524 199751000 5769.1 4427.99 10034.8 6402.3 4927.12 4615.48 4290.23 6371.79 4199.85 7537.2 TRUE FALSE 5849.885199 4911.452923 7501.390631 5991.685134 5598.277161 5433.970573 5104.278746 5830.466668 4603.264358 6001.114503 0.974799797 0.818423465 1.249999584 0.99842873 0.932872912 0.905493566 0.850555133 0.971563976 0.767068243 1 12.55101474 -6.869925536 3.315610306 0.896151458 1.014052351 0.175371593 0.114423064 0.437139584 9.481398196 0.037338095 0.043556756 1.35E-07 6.869925536 0.117900893 RNS(ph)FTPLSSSNTIR ddPTM_K562_Paclitaxel_30min_R1 2 RNSFTPLSSSNTIR 14 1 O60825 O60825 PFKFB2 "6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase" 1 RNS(1)FTPLSSSNTIR;RNS(0.983)FT(0.016)PLS(0.001)SSNTIR 116.04 0.0012806 125226000 3767.61 3434.65 4016.3 4020.47 3336.41 2955.73 3967.8 5167.2 4065.59 6395.3 TRUE FALSE 3820.368164 3809.656702 3002.335392 3762.615049 3790.885528 3479.887215 4720.669337 4728.214107 4456.108085 5091.93435 0.750278362 0.748174749 0.589625707 0.738936284 0.744488296 0.683411642 0.927087628 0.928569338 0.875130703 1 12.3139981 -7.765387669 24.99774993 0.926744414 0.708453178 0.808702618 0.053231343 44.24083072 280096.7301 0.021869234 0.015362879 1.72E-08 7.765387669 -0.218291236 RNS(ph)LPQIPMLNLEAR ddPTM_K562_Paclitaxel_30min_R1 1 RNSLPQIPMLNLEAR 15 1 H0YB74;Q14289-2;Q14289 H0YB74 PTK2B Protein-tyrosine kinase 2-beta 1 RNS(1)LPQIPMLNLEAR 76.573 0.02037 24118000 1067.5 1116.4 1324.2 1372 769.51 805.26 1232.6 1394.1 1178.2 1953.8 TRUE FALSE 1082.448294 1238.292327 989.8893325 1284.006061 874.3302899 948.0615546 1466.479415 1275.662503 1291.371374 1555.614488 0.695833256 0.796014911 0.636333321 0.825401197 0.562048179 0.609445054 0.942701053 0.820037685 0.830135863 1 10.60326886 -7.765382549 24.99995809 0.883221806 0.690682967 0.570929806 0.089082026 83.92978448 532111.5458 0.036648597 0.025749924 1.72E-08 7.765382549 -0.192538838 RNS(ph)LSGSSTGSQEQR ddPTM_K562_Paclitaxel_30min_R1 3 RNSLSGSSTGSQEQR 15 1 Q96J92;Q96J92-2 Q96J92 WNK4 Serine/threonine-protein kinase WNK4 1 RNS(0.95)LS(0.05)GSSTGSQEQR;RNS(0.871)LS(0.128)GS(0.001)STGSQEQR;RNS(0.999)LS(0.001)GSSTGSQEQR 136.36 5.77E-06 12574400 666.54 530.77 751.11 769.3 754.04 634.73 554.24 770.14 582.93 738.698 TRUE FALSE 675.8736165 588.7212635 561.4829909 719.9605413 856.753014 747.2904534 659.4041467 704.7117999 638.9230311 588.1509421 1.149149934 1.000969685 0.954657981 1.224108455 1.456689011 1.270575969 1.12114782 1.198181877 1.08632493 1 9.200042643 -6.275046481 24.29365816 1.213236632 1.031530251 0.246957532 0.123950065 662.7392387 1183230.914 0.036462088 0.054437726 5.31E-07 6.275046481 -0.181706381 RNS(ph)LTGEEGQLAR ddPTM_K562_Paclitaxel_30min_R1 2 RNSLTGEEGQLAR 13 1 Q9BX95 Q9BX95 SGPP1 Sphingosine-1-phosphate phosphatase 1 1 RNS(1)LTGEEGQLAR;RNS(1)LTGEEGQLAR 125.33 0.00058231 227050000 1283.27 1105.21 1461.43 1243.95 905.71 933.62 1045.26 1146.85 1191.74 1216.49 TRUE FALSE 1301.239739 1225.880565 1092.473922 1164.168615 1029.083036 1099.184398 1243.592628 1049.417934 1306.211952 968.5686703 1.343466684 1.265662005 1.12792614 1.20194742 1.062478136 1.134854381 1.283948848 1.083472929 1.348600251 1 9.919710527 -5.564429392 3.53509094 1.160733076 1.333460097 0.283363993 0.097912923 0.279411913 7.010599571 0.023937511 0.086457518 2.73E-06 5.564429392 0.172727021 RNS(ph)QISNENDCNLQSCSLR ddPTM_K562_Paclitaxel_30min_R1 1 RNSQISNENDCNLQSCSLR 19 1 Q9H9A7 Q9H9A7 RMI1 RecQ-mediated genome instability protein 1 1 RNS(0.94)QIS(0.06)NENDCNLQSCSLR 94.387 0.00076732 28237000 358.06 338.4 645.34 574.97 485.3 477.97 339.18 527.33 464.25 493.06 TRUE FALSE 363.0739447 375.3476564 482.4159355 538.0939977 551.4060762 562.7312685 403.5376344 482.530025 508.8432868 392.5741014 0.924854552 0.956119253 1.228853187 1.370681346 1.404591068 1.433439614 1.027927296 1.229143806 1.296171309 1 8.616821189 -5.771995027 4.362639044 1.268136017 0.931422592 0.444825251 0.137301284 0.165069788 7.399348169 0.037092474 0.093024358 1.69E-06 5.771995027 -0.336713425 RNS(ph)RTEEPTVASESVENGHR ddPTM_K562_Paclitaxel_30min_R1 2 RNSRTEEPTVASESVENGHR 20 2 A0A0D9SFT8;F6M2K2;Q14686 A0A0D9SFT8 NCOA6 Nuclear receptor coactivator 6 1 RNS(0.478)RT(0.478)EEPT(0.043)VASESVENGHR;RNS(0.499)RT(0.499)EEPT(0.002)VASESVENGHR 125.61 5.19E-07 43327000 3496.4 3236.4 4654.5 3471.1 2945.4 2784.39 2816.81 3648.3 3359.2 4198.6 TRUE FALSE 3545.360387 3589.761097 3479.413909 3248.479182 3346.613346 3278.162472 3351.284993 3338.354143 3681.866169 3342.923015 1.060556995 1.073838997 1.040829805 0.971748128 1.001103923 0.98062757 1.002501397 0.99863327 1.101391253 1 11.70689442 -6.019832802 5.923487226 1.006151121 1.065345319 0.340897836 0.033377464 0.176599746 22.44752392 0.009073465 0.017139108 9.55E-07 6.019832802 0.059194198 RNS(ph)S(ph)SPVSPASVPGQR ddPTM_K562_Paclitaxel_30min_R1 1 RNSSSPVSPASVPGQR 16 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 2 RNS(0.999)S(0.738)S(0.248)PVS(0.015)PASVPGQR 116.87 0.00061991 26527000 1824.4 1619.3 2555 1733.7 1643.6 1497.9 1377.3 1827.5 1475.9 1897.9 TRUE FALSE 1849.947229 1796.10065 1909.95865 1622.508242 1867.486146 1763.531533 1638.635485 1672.242468 1617.666789 1511.106938 1.224233164 1.188599301 1.263946715 1.073721654 1.235839833 1.167046149 1.084394124 1.106634101 1.070517743 1 10.56139005 -8.232295839 0.38006916 0.991131591 1.228937542 0.650930786 0.048627199 0.728548344 0.297797411 0.060356953 0.055506966 5.86E-09 8.232295839 0.237805952 RNS(ph)S(ph)SS(ph)ST(ph)DS(ph)ETLR ddPTM_K562_Paclitaxel_30min_R1 1 RNSSSSSTDSETLR 14 1 A0A0U1RR07;Q9HCH5-15;Q9HCH5-14;Q9HCH5-6;Q9HCH5;Q9HCH5-13 A0A0U1RR07 SYTL2 Synaptotagmin-like protein 2 5 RNS(0.962)S(0.517)S(0.517)S(0.547)S(0.547)T(0.898)DS(0.583)ET(0.427)LR 57.328 0.027156 0 0 0 0 0 0 68.388 0 0 0 0 TRUE FALSE 0 0 0 0 0 80.51565158 0 0 0 0 0 RNS(ph)SEASSGDFLDLK ddPTM_K562_Paclitaxel_30min_R1 3 RNSSEASSGDFLDLK 15 1 J3KT51;Q9UK76;Q9UK76-2;J3KSH8;Q9UK76-3 J3KT51 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 RNS(0.625)S(0.375)EASSGDFLDLK;RNS(0.5)S(0.5)EASSGDFLDLK;RNS(0.759)S(0.068)EAS(0.086)S(0.086)GDFLDLK 145.17 3.01E-06 133545000 9070.4 7295.4 17732.5 11069.1 7787.37 6928.5 7293.1 11347.8 5881.96 13223.3 TRUE FALSE 9197.413585 8091.936443 13255.71106 10359.17747 8848.141635 8157.172194 8676.927652 10383.73356 6446.948539 10528.3842 0.873582632 0.768582936 1.25904515 0.983928518 0.840408316 0.774779115 0.824146183 0.986260889 0.612339787 1 13.36199642 -6.768109895 11.21851925 0.834909087 0.977388557 0.1482868 0.15401604 0.413252645 641.8287548 0.047371151 0.056083358 1.71E-07 6.768109895 0.14247947 RNS(ph)TIVLR ddPTM_K562_Paclitaxel_30min_R1 1 RNSTIVLR 8 1 Q8NEY1-2;Q8NEY1-3;Q8NEY1;A0A0A0MRJ3;Q8NEY1-6;Q8NEY1-5;Q8NEY1-7;Q8NEY1-4;H0Y6F6 Q8NEY1-2 NAV1 Neuron navigator 1 1 RNS(0.914)T(0.086)IVLR 97.452 0.0090199 4537700 657.5 655.97 797.43 621.44 571.23 642.31 926.15 645.42 629.25 1036.1 TRUE FALSE 666.7070286 727.5910229 596.108934 581.5836199 649.041197 756.21466 1101.882128 590.5875424 689.6922741 824.9422513 0.808186303 0.881990251 0.722606865 0.704999191 0.786771675 0.916687997 1.335708198 0.715913801 0.836049157 1 9.688149319 -7.319616565 4.772230091 0.969593947 0.778711329 0.256160787 0.154448664 0.327433995 15.71772468 0.057768255 0.051330921 4.79E-08 7.319616565 -0.190882618 RNS(ph)TTFPSR ddPTM_K562_Paclitaxel_30min_R1 3 RNSTTFPSR 9 1 Q96E09 Q96E09 FAM122A Protein FAM122A 1 RNS(0.974)T(0.021)T(0.005)FPSR;RNS(0.979)T(0.017)T(0.005)FPSR;RNS(0.824)T(0.133)T(0.043)FPSR 93.839 0.0086985 44644800 1163.17 1133.76 1632 1462.14 1267.28 1086.72 1015.1 1227.59 1174.02 1482.24 TRUE FALSE 1179.457969 1257.547751 1219.981416 1368.364885 1439.904991 1279.434534 1207.709926 1123.298567 1286.789867 1180.158674 0.999406261 1.065575145 1.033743548 1.159475344 1.220094401 1.084120772 1.023345379 0.951819947 1.090353267 1 10.20476513 -7.755093664 4.633526897 1.011192369 1.099181872 0.247203837 0.066071228 0.285210104 15.34036924 0.029573681 0.021109866 1.76E-08 7.755093664 0.087989503 RNS(ph)VERPAEPVAGAATPSLVEQQK ddPTM_K562_Paclitaxel_30min_R1 1 RNSVERPAEPVAGAATPSLVEQQK 24 2 Q9BTC0 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 RNS(1)VERPAEPVAGAATPSLVEQQK 103.64 8.06E-05 73974000 1503.1 1370.8 2599.5 1805 1406.2 1166 1041.9 1635.4 1723.4 2552.9 TRUE FALSE 1524.148037 1520.46858 1943.224075 1689.235379 1597.748247 1372.773729 1239.595086 1496.462562 1888.94027 2032.617579 0.749844955 0.748034749 0.9560205 0.831064041 0.786054526 0.675372359 0.609851602 0.736224353 0.929314147 1 10.98912309 -8.886204783 4.164857944 0.99617939 0.763034055 0.474764348 0.086710191 0.202575615 5.825686737 0.094823455 0.025027146 1.30E-09 8.886204783 -0.233145335 RNSFT(ph)PLSSSNTIR ddPTM_K562_Paclitaxel_30min_R1 1 RNSFTPLSSSNTIR 14 1 O60825 O60825 PFKFB2 "6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase 2;6-phosphofructo-2-kinase;Fructose-2,6-bisphosphatase" 1 RNSFT(0.996)PLS(0.002)S(0.001)SNTIR 203.52 7.81E-10 62901000 1770.2 2171.3 2335.5 1923 1521.5 1571.4 2110.7 2393.2 2018.9 3180.6 TRUE FALSE 1794.988262 2408.369877 1745.87414 1799.667387 1728.754059 1850.065726 2511.194306 2189.882722 2212.824366 2532.391974 0.708811385 0.951025711 0.689417025 0.710659094 0.682656586 0.730560571 0.991629389 0.864748722 0.873808 1 11.30628501 -7.750459945 24.99987998 0.921275589 0.747870407 0.548172564 0.082913999 183.2484979 417252.6949 0.032969492 0.025286964 1.78E-08 7.750459945 -0.173405182 RNSNS(ph)PPS(ph)PSSMNQR ddPTM_K562_Paclitaxel_30min_R1 1 RNSNSPPSPSSMNQR 15 1 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 2 RNS(0.004)NS(0.996)PPS(0.766)PS(0.216)S(0.018)MNQR 102.72 0.0018018 0 1066.9 1309.1 2082.5 1549.2 1253.7 1170 1410.2 1644.3 1426.4 1695.1 TRUE FALSE 1081.839892 1452.031965 1556.747119 1449.841246 1424.475165 1377.483072 1677.778088 1504.606452 1563.412093 1349.63769 0.801578009 1.075867973 1.153455576 1.074244782 1.055450049 1.020631747 1.243132213 1.114822491 1.15839392 1 10.39835645 -5.266903298 4.14168893 1.106563152 0.777877864 0.635726391 0.067859433 0.134915646 5.153065308 0.01710998 0.131239366 5.41E-06 5.266903298 -0.328685288 RNSNSPPS(ph)PSSMNQR ddPTM_K562_Paclitaxel_30min_R1 1 RNSNSPPSPSSMNQR 15 1 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 RNS(0.001)NS(0.461)PPS(0.488)PS(0.025)S(0.025)MNQR 73.984 0.023328 12960000 475.52 529.27 768.17 672.99 576.83 532.51 409.75 680.79 701.7 671.54 TRUE FALSE 482.1787471 587.0574885 574.2359829 629.8274336 655.4040118 626.9431717 487.4979235 622.9526401 769.1014203 534.6797794 0.901808458 1.097960894 1.07398111 1.177952595 1.225787915 1.172558222 0.911756798 1.165094818 1.438433713 1 9.062531307 -4.461416893 1.03304657 1.15336017 4.13E-07 0.239793187 0.131827346 12.5447056 3.236043348 0.042245804 23.71509558 3.46E-05 4.461416893 -1.153359758 RNSNSPPSPS(ph)SMNQR ddPTM_K562_Paclitaxel_30min_R1 1 RNSNSPPSPSSMNQR 15 1 Q7Z5L9;Q7Z5L9-2;Q7Z5L9-3 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 RNS(0.005)NS(0.027)PPS(0.13)PS(0.419)S(0.419)MNQR 102.84 0.0024036 10649000 1182.7 1249.8 1426.5 1248.2 962.93 920.79 1215.2 1288.9 1276.2 1177.5 TRUE FALSE 1199.261449 1386.257391 1066.362432 1168.146039 1094.097369 1084.079178 1445.777856 1179.3999 1398.784712 937.5248537 1.2791783 1.47863535 1.137423107 1.245989409 1.167006255 1.156320468 1.542122164 1.25799321 1.491997473 1 9.872713126 RNSS(ph)EASSGDFLDLK ddPTM_K562_Paclitaxel_30min_R1 1 RNSSEASSGDFLDLK 15 1 J3KT51;Q9UK76;Q9UK76-2;J3KSH8;Q9UK76-3 J3KT51 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 RNS(0.045)S(0.951)EAS(0.002)S(0.002)GDFLDLK 124.38 0.0005319 87759000 2477 2505.6 5082.2 3244 2398.4 1896.3 1714.7 3338.8 1716.1 4179.4 TRUE FALSE 2511.685642 2779.169881 3799.135754 3035.94436 2725.102685 2232.58218 2040.055374 3055.1481 1880.939073 3327.635986 0.754795793 0.835178455 1.141692111 0.912342688 0.818930525 0.670921396 0.613064464 0.918113674 0.565247846 1 11.70028191 -6.926339811 3.642572201 0.73970192 0.92141719 0.185201452 0.153286792 0.354008047 9.39159577 0.049306945 0.055931509 1.18E-07 6.926339811 0.181715269 RNSS(ph)SPVSPASVPGQR ddPTM_K562_Paclitaxel_30min_R1 1 RNSSSPVSPASVPGQR 16 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 RNS(0.019)S(0.823)S(0.158)PVSPASVPGQR 103.73 0.0013726 22990000 1287.5 1452 1841.9 1434.6 1357 1162.6 1137 1666.3 1158.7 1625.8 TRUE FALSE 1305.528972 1610.53427 1376.889565 1342.591177 1541.846374 1368.770786 1352.739814 1524.737414 1269.998312 1294.461068 1.008550203 1.244173588 1.06367785 1.037181581 1.191110658 1.057405912 1.04502163 1.177893606 0.981101977 1 10.33813586 -8.784070351 24.90875582 0.990550795 1.103787213 0.27397929 0.073296545 329.6092783 362773.4419 0.066884722 0.017318905 1.64E-09 8.784070351 0.113236418 RNSSS(ph)PVSPASVPGQR ddPTM_K562_Paclitaxel_30min_R1 1 RNSSSPVSPASVPGQR 16 1 Q9H1B7 Q9H1B7 IRF2BPL Interferon regulatory factor 2-binding protein-like 1 RNS(0.011)S(0.423)S(0.566)PVSPASVPGQR 172.42 9.74E-09 6833500 2175.9 1967.2 2221.6 2534.3 1898.4 2380.3 1827.9 2552.8 1878.3 2366.4 TRUE FALSE 2206.369313 2181.985549 1660.729604 2371.761341 2156.99422 2802.412784 2174.734483 2335.923706 2058.719107 1884.126381 1.171030423 1.158088741 0.881432169 1.258812235 1.144824594 1.487380471 1.154240238 1.239791412 1.092665082 1 10.87968002 -4.768328351 12.86741589 1.16903849 3.093416386 0 0.152465216 12194116.26 719418.079 0.038487632 695210571.6 1.70E-05 4.768328351 1.924377896 RNT(ph)LPAMDNSR ddPTM_K562_Paclitaxel_30min_R1 1 RNTLPAMDNSR 11 1 Q9UQC2;Q9UQC2-2 Q9UQC2 GAB2 GRB2-associated-binding protein 2 1 RNT(1)LPAMDNSR 92.65 0.017849 9568500 507.89 303.64 423.51 452.36 345.24 300.25 342.02 419.72 397.23 521.74 TRUE FALSE 515.002027 336.792442 316.5896626 423.3476543 392.267533 353.4951218 406.9165095 384.0621662 435.3857164 415.4091016 1.239746614 0.810748827 0.762115373 1.019110204 0.9442921 0.850956612 0.979556076 0.924539604 1.048089016 1 8.698389016 -8.754882522 24.1284234 1.024044519 0.931999168 0.061511694 0.124920604 243.4499368 895905.7273 0.087238888 0.031182164 1.76E-09 8.754882522 -0.092045351 RNT(ph)QDENMR ddPTM_K562_Paclitaxel_30min_R1 1 RNTQDENMR 9 1 Q9H1B4-3;Q9H1B4-5;Q9H1B4-4;Q9H1B4-6;Q9H1B4-2;Q9H1B4 Q9H1B4-3 NXF5 Nuclear RNA export factor 5 1 RNT(1)QDENMR 98.044 0.0097638 25551000 0 70.676 139.06 119.08 0 133.84 61.575 179.41 0 123.05 TRUE FALSE 0 78.39264469 103.9525831 111.4427418 0 157.5746448 73.25853481 164.1680007 0 97.97234246 0 0.800150764 1.061040091 1.137491857 0 1.608358449 0.747747099 1.675656584 0 1 6.614302629 -7.270205437 24.99625004 1.032418067 0.666373925 0.10876639 0.563662763 1673.62045 4772283.335 0.190389425 0.170427612 5.37E-08 7.270205437 -0.366044142 RNYS(ph)REQHGVAASCLEDLR ddPTM_K562_Paclitaxel_30min_R1 1 RNYSREQHGVAASCLEDLR 19 2 O00273;K7ERT1;O00273-2 O00273;O00273-2 DFFA DNA fragmentation factor subunit alpha 1 RNY(0.461)S(0.539)REQHGVAASCLEDLR 62.617 0.015907 15880000 1054.2 1168.9 1220.5 1030.1 864.57 837.52 900.77 1264 1116 1443.8 TRUE FALSE 1068.962052 1296.524455 912.36968 964.0339966 982.3390713 986.0424126 1071.686405 1156.61531 1223.196786 1149.552767 0.929893853 1.127851188 0.793673597 0.838616568 0.854540217 0.857761767 0.932263777 1.006143731 1.064063191 1 10.16685698 -8.246500985 3.016820326 1.031974945 0.900811139 0.291202129 0.08609277 0.369420112 6.784613362 0.055416832 0.026011173 5.67E-09 8.246500985 -0.131163806 RPAAAAAAGSAS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 RPAAAAAAGSASPR 14 1 Q96S55-2;Q96S55 Q96S55-2 WRNIP1 ATPase WRNIP1 1 RPAAAAAAGSAS(1)PR;RPAAAAAAGS(0.002)AS(0.998)PR;RPAAAAAAGS(0.004)AS(0.996)PR;RPAAAAAAGS(0.009)AS(0.991)PR 171.78 2.58E-06 314187400 4877.93 5116.96 5759.48 5556.3 4583.4 4792.7 4741.4 5577.9 3549.13 5814.66 TRUE FALSE 4946.23607 5675.646997 4305.428042 5199.943787 5207.736678 5642.618052 5641.055898 5104.022579 3890.039794 4629.6291 1.068387113 1.225939892 0.929972563 1.123187986 1.124871251 1.218805639 1.218468213 1.102469003 0.840248692 1 12.1766809 -8.669709786 6.574449849 0.922324826 1.130747565 0.455572637 0.090480216 0.178969494 10.39217633 0.063835459 0.023350938 2.14E-09 8.669709786 0.208422739 RPAEATSS(ph)PT(ph)SPERPR ddPTM_K562_Paclitaxel_30min_R1 1 RPAEATSSPTSPERPR 16 2 Q9BU76 Q9BU76 MMTAG2 Multiple myeloma tumor-associated protein 2 2 RPAEAT(0.004)S(0.22)S(0.776)PT(0.938)S(0.063)PERPR 85.177 0.024487 311490000 3125.8 3023.5 4233.2 3583.4 3501.6 3194.3 2854.4 3353.2 3211 3542.5 TRUE FALSE 3169.570844 3353.615955 3164.476304 3353.576763 3978.577203 3760.764255 3396.007499 3068.32473 3519.430897 2820.536555 1.123747479 1.188999287 1.121941248 1.188985392 1.410574593 1.333350652 1.20402889 1.087851432 1.247787727 1 11.46175392 -9.801936668 0.827180138 0.997611569 1.2201463 0.308942096 0.094157682 4.939463299 4.031143709 0.143308099 0.034955975 1.58E-10 9.801936668 0.222534731 RPAS(ph)PALLLPPCMLK ddPTM_K562_Paclitaxel_30min_R1 2 RPASPALLLPPCMLK 15 1 Q9HAW0-2;Q9HAW0 Q9HAW0-2 BRF2 Transcription factor IIIB 50 kDa subunit 1 RPAS(1)PALLLPPCMLK;RPAS(1)PALLLPPCMLK 98.882 0.0034671 63897000 7837.6 7070.8 11880.2 8702.5 7532.8 6962.7 7134.8 8991.8 7994.2 10902.6 TRUE FALSE 7947.350581 7842.813856 8880.896578 8144.360601 8558.894891 8197.437084 8488.591054 8227.890465 8762.078629 8680.644135 0.915525445 0.903482937 1.023068846 0.938220767 0.98597463 0.944335116 0.977875711 0.947843309 1.009381158 1 13.08358638 -5.733565321 24.99824855 0.97408387 0.909504097 0.501044498 0.027212267 169.682589 152173.7488 0.006383907 0.016882409 1.85E-06 5.733565321 -0.064579772 RPAS(ph)PS(ph)SPEHLPATPAESPAQR ddPTM_K562_Paclitaxel_30min_R1 2 RPASPSSPEHLPATPAESPAQR 22 1 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 2 RPAS(0.667)PS(0.667)S(0.667)PEHLPATPAESPAQR;RPAS(0.667)PS(0.667)S(0.667)PEHLPATPAESPAQR 66.536 0.018904 440760000 1356.66 1043.61 1563.73 1095.48 1262.64 1172.93 1129.64 1437.13 1082.39 1279.91 TRUE FALSE 1375.657426 1157.554869 1168.947022 1025.220816 1434.632945 1380.932667 1343.983293 1315.036836 1186.358396 1019.063639 1.349922981 1.135900472 1.147079511 1.006041994 1.407795244 1.355099538 1.318841376 1.290436422 1.164165171 1 9.993028434 -4.560129092 4.372054641 1.219576336 12.31515378 0.086426931 0.133387552 1989.017325 356.5822546 0.035130114 215601.2878 2.75E-05 4.560129092 11.09557744 RPAS(ph)PSS(ph)PEHLPATPAESPAQR ddPTM_K562_Paclitaxel_30min_R1 1 RPASPSSPEHLPATPAESPAQR 22 1 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 2 RPAS(0.767)PS(0.447)S(0.786)PEHLPATPAESPAQR 70.761 0.012344 351140000 752.59 569.24 879.07 972.46 875.24 662.7 559.15 987.31 665.48 949.83 TRUE FALSE 763.1285819 631.3915482 657.1379063 910.0907682 994.4625059 780.2205402 665.2457935 903.4318529 729.4023274 756.2541246 1.009090142 0.834893361 0.868937947 1.203419246 1.314984571 1.031690955 0.879659062 1.194614116 0.964493685 1 9.562727296 -6.244940301 24.38364111 1.091147236 0.897365744 0.292291787 0.127756835 756.5098263 1118027.514 0.036420947 0.062829995 5.69E-07 6.244940301 -0.193781492 RPAS(ph)PSSPEHLPATPAESPAQR ddPTM_K562_Paclitaxel_30min_R1 3 RPASPSSPEHLPATPAESPAQR 22 1 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 1 RPAS(0.44)PS(0.44)S(0.12)PEHLPATPAESPAQR;RPAS(0.618)PS(0.273)S(0.109)PEHLPATPAESPAQR;RPAS(0.553)PS(0.223)S(0.223)PEHLPATPAESPAQR 57.986 0.01407 82355000 3157.27 2840.37 3480.75 2764.36 2843.07 2959.17 3030.08 3441.27 2649.92 3822.65 TRUE FALSE 3201.481521 3150.491202 2601.991613 2587.066322 3230.344268 3483.937251 3605.021862 3148.912634 2904.456656 3043.591832 1.051876105 1.035122768 0.8549082 0.850004358 1.061359225 1.144679525 1.184462984 1.034604115 0.954285862 1 11.57155918 -6.902792582 9.18623522 1.076574224 0.947781151 0.291268543 0.086900182 0.371676687 31.8299335 0.029585108 0.033576018 1.25E-07 6.902792582 -0.128793073 RPAS(ph)PYGEADGEVAMVTSR ddPTM_K562_Paclitaxel_30min_R1 1 RPASPYGEADGEVAMVTSR 19 1 A0A2R8Y5Q1;A0A2R8Y7P3;G3V0H1;F5GWL1;A0A590UJ80;F5H876;I3L0A5;F5H0I3;P35711-4;P35711-2;P35711-5;P35711 A0A2R8Y5Q1 SOX5 Transcription factor SOX-5 1 RPAS(0.997)PY(0.003)GEADGEVAMVTSR 92.518 0.00087092 8740400 522.55 346.66 370.78 481.65 333.88 390.25 221.72 409.82 476.57 466.51 TRUE FALSE 529.8673122 384.5095111 277.1720033 450.7591248 379.3601086 459.4553581 263.7902125 375.003233 522.3466779 371.4350059 1.426541128 1.035199981 0.746219389 1.213561236 1.021336445 1.236973766 0.710192115 1.009606599 1.406293617 1 8.536965978 RPAS(ph)VSSSAAVEHEQR ddPTM_K562_Paclitaxel_30min_R1 4 RPASVSSSAAVEHEQR 16 1 Q7Z5L9;Q7Z5L9-2 Q7Z5L9 IRF2BP2 Interferon regulatory factor 2-binding protein 2 1 RPAS(0.522)VS(0.414)S(0.058)S(0.005)AAVEHEQR;RPAS(0.902)VS(0.094)S(0.004)SAAVEHEQR;RPAS(0.994)VS(0.004)S(0.001)SAAVEHEQR;RPAS(0.9)VS(0.098)S(0.002)SAAVEHEQR 133.98 2.12E-07 89994000 2824.4 2375.61 2804.95 2361.2 2205.5 2456.94 2485.4 3208.16 2225 3656.13 TRUE FALSE 2863.950314 2634.987134 2096.805681 2209.7632 2505.926439 2892.643812 2956.991675 2935.606783 2438.721192 2911.008699 0.983834337 0.905180096 0.720302101 0.759105667 0.86084471 0.993691229 1.015796235 1.008450021 0.837758126 1 11.50730344 -7.185660211 4.996397282 0.974348719 0.835353703 0.362079755 0.082938325 0.25387876 11.62189347 0.029948536 0.029794188 6.52E-08 7.185660211 -0.138995016 RPASPS(ph)HNGSSGGGYGASK ddPTM_K562_Paclitaxel_30min_R1 1 RPASPSHNGSSGGGYGASK 19 1 K7ELX9;K7EQ79;K7ENM4;K7ENP7;Q6PI98;Q6PI98-3;Q6PI98-4 K7ELX9 INO80C INO80 complex subunit C 1 RPAS(0.415)PS(0.585)HNGSSGGGYGASK 85.087 0.0024443 2788600 1347.3 1134.1 2118.3 1272.5 1055.3 1037 938.14 1401.7 1308.6 1778.6 TRUE FALSE 1366.166357 1257.924873 1583.508966 1190.887545 1199.049726 1220.89739 1116.147168 1282.616836 1434.296877 1416.120344 0.964724759 0.888289529 1.118202258 0.840950807 0.846714569 0.862142399 0.78817254 0.905725874 1.012835444 1 10.46772816 RPASPS(ph)SPEHLPATPAESPAQR ddPTM_K562_Paclitaxel_30min_R1 1 RPASPSSPEHLPATPAESPAQR 22 1 Q9H7L9 Q9H7L9 SUDS3 Sin3 histone deacetylase corepressor complex component SDS3 1 RPAS(0.242)PS(0.379)S(0.379)PEHLPAT(0.001)PAESPAQR 49.588 0.030729 130490000 1122.7 1179.8 1205.2 1098 1040.2 1115.7 1076.5 1307.8 988.69 1381.5 TRUE FALSE 1138.421264 1308.614554 900.9323543 1027.579194 1181.892851 1313.55373 1280.760255 1196.694227 1083.658092 1099.949542 1.034975897 1.189704168 0.819066985 0.934205757 1.074497335 1.194194533 1.164380916 1.087953748 0.985188912 1 10.10322163 -6.939146619 8.147115822 1.100840029 0.996465915 0.142806847 0.105185547 0.492339261 58.5137093 0.034660821 0.039317958 1.15E-07 6.939146619 -0.104374114 RPCTLNPAQRYS(ph)PSNGPPQPT(ph)PPPHYR ddPTM_K562_Paclitaxel_30min_R1 1 RPCTLNPAQRYSPSNGPPQPTPPPHYR 27 2 O75081;O75081-2;O75081-4;H3BNH2 O75081 CBFA2T3 Protein CBFA2T3 2 RPCT(0.035)LNPAQRY(0.381)S(0.549)PS(0.037)NGPPQPT(0.998)PPPHY(0.001)R 56.637 0.003897 12427000 560.7 421.34 744.1 472.7 449.1 393.7 476.91 454.22 562.12 671.09 TRUE FALSE 568.5515299 467.3433261 556.2427521 442.3831377 510.2750233 463.5171672 567.4011829 415.6311758 616.1141376 534.3214896 1.064062631 0.874648194 1.041026354 0.827934392 0.954996258 0.867487414 1.061909719 0.777867228 1.153077594 1 9.061564231 -8.783675023 24.99994792 1.076538739 0.93459324 0.245099229 0.10023389 356.5114536 400821.153 0.086671972 0.022448596 1.65E-09 8.783675023 -0.1419455 RPDHS(ph)GGSPSPPT(ph)SEPAR ddPTM_K562_Paclitaxel_30min_R1 1 RPDHSGGSPSPPTSEPAR 18 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 2 RPDHS(0.96)GGS(0.041)PS(0.061)PPT(0.819)S(0.119)EPAR 110.98 0.00048147 2870900 1515 1152.6 1598 1434.5 1203.5 1020.4 1244.6 1181.9 1020.2 1300.3 TRUE FALSE 1536.214674 1278.444766 1194.565136 1342.497591 1367.437075 1201.353613 1480.756353 1081.490218 1118.194768 1035.298146 1.483837945 1.234856616 1.153836835 1.296725581 1.320814763 1.160393861 1.430270457 1.044617168 1.080070289 1 10.01583058 -8.286124951 24.44832563 1.046757701 1.28495522 0.575044846 0.100306201 463.8504888 459389.1781 0.053599227 0.0257685 5.17E-09 8.286124951 0.23819752 RPDHSGGS(ph)PSPPTSEPAR ddPTM_K562_Paclitaxel_30min_R1 3 RPDHSGGSPSPPTSEPAR 18 1 Q8TAD8 Q8TAD8 SNIP1 Smad nuclear-interacting protein 1 1 RPDHS(0.002)GGS(0.997)PSPPTSEPAR;RPDHS(0.006)GGS(0.926)PS(0.068)PPTSEPAR;RPDHS(0.011)GGS(0.967)PS(0.022)PPTSEPAR 117.55 0.00011562 125884000 3938.2 4060.1 5034.8 4369.2 4271.8 4053.8 4132.7 4242.7 3331.83 5132.6 TRUE FALSE 3993.34695 4503.395448 3763.70247 4088.979068 4853.691482 4772.684512 4916.858251 3882.256153 3651.867159 4086.573303 0.977187158 1.101997961 0.920992282 1.0005887 1.187716731 1.167894017 1.203173879 0.950002818 0.893625756 1 11.9966759 -8.427777861 11.09445536 0.938505274 1.07910728 0.305502381 0.091074283 0.759411874 84.92908745 0.054565941 0.02617556 3.73E-09 8.427777861 0.140602006 RPDPDS(ph)DEDEDYER ddPTM_K562_Paclitaxel_30min_R1 2 RPDPDSDEDEDYER 14 1 H0Y6J6;Q5W012;Q96I25;Q5W011;Q5W010 H0Y6J6 RBM17 Splicing factor 45 1 RPDPDS(1)DEDEDYER;RPDPDS(1)DEDEDYER 144.08 6.31E-06 380270000 3107.4 2795.2 3700.4 3192.05 3277.9 3146.22 3135 3171.7 2168.07 3947.9 TRUE FALSE 3150.913187 3100.389389 2766.188254 2987.3262 3724.405475 3704.157942 3729.849884 2902.244288 2376.322811 3143.315813 1.002416994 0.986343585 0.880022377 0.950374184 1.184865186 1.178423729 1.186597245 0.923306617 0.755992383 1 11.61807151 -8.508719451 23.88865884 0.865213936 1.049895117 0.29766007 0.113390811 462.2863835 779952.1577 0.073018029 0.032803936 3.10E-09 8.508719451 0.18468118 RPDPDS(ph)DEDEDYERER ddPTM_K562_Paclitaxel_30min_R1 7 RPDPDSDEDEDYERER 16 2 H0Y6J6;Q5W012;Q96I25;Q5W011;Q5W010 H0Y6J6 RBM17 Splicing factor 45 1 RPDPDS(0.99)DEDEDY(0.01)ERER;RPDPDS(1)DEDEDYERER;RPDPDS(1)DEDEDYERER;RPDPDS(1)DEDEDYERER;RPDPDS(1)DEDEDYERER;RPDPDS(1)DEDEDYERER;RPDPDS(0.999)DEDEDY(0.001)ERER 132.52 2.84E-06 3680657600 13449.58 12603.3 17353.7 15054.5 13278.16 13037.9 12366.49 14085.8 14096.03 15584 TRUE FALSE 13637.91562 13979.37092 12972.54381 14088.97175 15086.87019 15349.9885 14712.96692 12889.12337 15450.01666 12407.97225 1.099125252 1.126644277 1.045500711 1.135477375 1.215901349 1.237106934 1.185767233 1.038777579 1.245168538 1 13.59897974 -6.515238101 24.50443413 1.162781609 1.093452749 0.109849441 0.078083295 544.9995349 1747879.328 0.02219308 0.029973518 3.05E-07 6.515238101 -0.06932886 RPDYAPMES(ph)S(ph)DEEDEEFQFIKK ddPTM_K562_Paclitaxel_30min_R1 2 RPDYAPMESSDEEDEEFQFIKK 22 2 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 2 RPDY(0.001)APMES(1)S(1)DEEDEEFQFIKK;RPDY(0.002)APMES(0.999)S(0.999)DEEDEEFQFIKK 76.118 0.0011629 64126000 5662.2 3836.32 10494.4 5620.2 3792.95 3911.7 2850.56 5166.9 5467.3 7579.9 TRUE FALSE 5741.488269 4255.182391 7844.958927 5259.745527 4309.614005 4605.385072 3391.438879 4727.939594 5992.458594 6035.112219 0.951347392 0.705070964 1.299886173 0.871524064 0.714090119 0.763098498 0.561951254 0.783405415 0.992932422 1 12.55916488 -4.920301671 17.86175799 0.844889609 3.77465541 0.019446171 0.195163813 33574428.22 86142774.52 0.050840179 3853947487 1.20E-05 4.920301671 2.929765801 RPEGPGAQAPS(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 1 RPEGPGAQAPSSPR 14 1 P40222 P40222 TXLNA Alpha-taxilin 1 RPEGPGAQAPS(0.5)S(0.5)PR 125.96 0.00024259 19815000 1312.8 1391.7 2133.2 1812.9 1426.9 1723.9 1558.2 1753.9 736.94 1776.4 TRUE FALSE 1331.18325 1543.650512 1594.647277 1696.628708 1621.267938 2029.60946 1853.860316 1604.895247 807.7263797 1414.368705 0.941185453 1.091406015 1.127462218 1.19956607 1.146283803 1.43499319 1.31073341 1.134707832 0.571086151 1 10.46594254 -8.648472767 7.270480321 0.789799786 1.185334943 0.497181166 0.156244207 0.1759547 10.30985727 0.110419217 0.04092759 2.25E-09 8.648472767 0.395535157 RPEGPGAQAPSS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 RPEGPGAQAPSSPR 14 1 P40222 P40222 TXLNA Alpha-taxilin 1 RPEGPGAQAPS(0.039)S(0.961)PR;RPEGPGAQAPS(0.053)S(0.947)PR;RPEGPGAQAPS(0.003)S(0.997)PR;RPEGPGAQAPS(0.001)S(0.999)PR 144.4 2.14E-05 1172385100 7530.9 7714.5 9716 7663.8 7301.9 7510.1 7579.5 8505.8 4224.92 9297.8 TRUE FALSE 7636.355835 8556.795199 7263.075634 7172.27817 8296.542402 8841.910788 9017.670557 7783.179198 4630.742443 7402.903256 1.031535273 1.155870191 0.981111786 0.96884667 1.120714687 1.194384214 1.21812622 1.051368487 0.62553059 1 12.85387546 -8.614381635 8.108506073 0.815449412 1.096427706 0.485020489 0.115120513 0.205031057 15.90143078 0.078436462 0.029323145 2.43E-09 8.614381635 0.280978294 RPEGPGAQAPSSPRVT(ph)EAPCYPGAPSTEASGQTGPQEPTSAR ddPTM_K562_Paclitaxel_30min_R1 1 RPEGPGAQAPSSPRVTEAPCYPGAPSTEASGQTGPQEPTSAR 42 2 P40222 P40222 TXLNA Alpha-taxilin 1 RPEGPGAQAPS(0.195)S(0.195)PRVT(0.547)EAPCY(0.063)PGAPSTEASGQTGPQEPTSAR 63.98 3.56E-05 57629000 329.28 249.91 281.32 212.39 264.48 151.52 152.1 379.52 267.33 190.42 TRUE FALSE 333.8909359 277.1960189 210.2972867 198.768256 300.5066537 178.3899446 180.960181 347.2774071 293.008241 151.6122995 2.202268134 1.828321448 1.387072734 1.311029888 1.982073056 1.176619213 1.193571904 2.290562232 1.932615243 1 7.244242986 -5.437325516 3.300776929 1.56402891 2.196654002 0.216442204 0.393124498 0.448342895 8.451899632 0.103941505 0.553792371 3.65E-06 5.437325516 0.632625092 RPEGPGAQAPSSPRVT(ph)EAPCYPGAPSTEASGQTGPQEPTSARA ddPTM_K562_Paclitaxel_30min_R1 2 RPEGPGAQAPSSPRVTEAPCYPGAPSTEASGQTGPQEPTSARA 43 3 P40222 P40222 TXLNA Alpha-taxilin 1 RPEGPGAQAPS(0.21)S(0.21)PRVT(0.302)EAPCY(0.275)PGAPS(0.002)TEASGQTGPQEPTSARA;RPEGPGAQAPS(0.31)S(0.31)PRVT(0.362)EAPCY(0.016)PGAPS(0.001)TEASGQTGPQEPTSARA 69.477 2.39E-08 151167000 581.09 542.12 675.83 667.92 484.27 527.07 462.44 877.43 963.18 693.32 TRUE FALSE 589.2270528 601.3104949 505.2083579 625.0826007 550.2357728 620.5384641 550.1855759 802.8868448 1055.697743 552.0210034 1.067399699 1.08928916 0.91519771 1.13235293 0.99676601 1.124121112 0.996675077 1.454449812 1.912423143 1 9.10857935 -8.309273534 5.554318089 1.521415713 1.046861234 0.423343084 0.215659707 0.169174078 12.6443012 0.111115628 0.052922978 4.91E-09 8.309273534 -0.474554478 RPES(ph)PS(ph)EISPIKGSVR ddPTM_K562_Paclitaxel_30min_R1 1 RPESPSEISPIKGSVR 16 2 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 Q7Z5K2 WAPAL Wings apart-like protein homolog 2 RPES(0.991)PS(0.824)EIS(0.185)PIKGSVR 107.73 0.0040177 30323000 3473.7 3140.1 6276.7 4844.6 3097.6 3273.3 3090.2 3862.3 3350.5 5245.7 TRUE FALSE 3522.342517 3482.946737 4692.069456 4533.88904 3519.545563 3853.773796 3676.549318 3534.173507 3672.330495 4176.623461 0.843346917 0.833914469 1.123412129 1.085539332 0.842677248 0.922700797 0.88026832 0.846179585 0.879258217 1 12.02812137 -6.799561547 24.99962201 0.888120072 0.972569492 0.133207336 0.094401607 337.0923354 221055.4479 0.031618245 0.035852445 1.59E-07 6.799561547 0.08444942 RPES(ph)PSEIS(ph)PIKGSVR ddPTM_K562_Paclitaxel_30min_R1 1 RPESPSEISPIKGSVR 16 2 Q7Z5K2;Q7Z5K2-2;Q7Z5K2-3 Q7Z5K2 WAPAL Wings apart-like protein homolog 2 RPES(0.965)PS(0.061)EIS(0.974)PIKGSVR 138.97 2.00E-08 27489000 3419.2 2827.9 5786.7 3713.9 2914.1 2651.6 2615.1 3913 2639.8 4783.4 TRUE FALSE 3467.079349 3136.659685 4325.776016 3475.707077 3311.049756 3121.82403 3111.301573 3580.566226 2893.364585 3808.540454 0.910343317 0.82358576 1.135809392 0.91260868 0.869374973 0.819690395 0.816927537 0.940141314 0.759704307 1 11.8950225 -6.636032076 4.532339562 0.860028433 0.954701413 0.14232439 0.095922583 0.388971384 13.64652033 0.028415205 0.037060114 2.31E-07 6.636032076 0.09467298 RPFDPNDR ddPTM_K562_Paclitaxel_30min_R1 1 RPFDPNDR 8 1 F8WEA1;A0A0B4J1Z1;C9JAB2;Q16629-3;Q16629-2;Q16629-4;Q16629 F8WEA1 SRSF7 Serine/arginine-rich splicing factor 7 0 87.639 0.028702 3513700 560.23 536.59 471.68 518.06 374.15 565.56 354.85 408.92 346.19 671.78 FALSE TRUE 568.0749485 595.1767108 352.5985503 484.8339504 425.1155644 665.8541251 422.1809351 374.1796936 379.4430963 534.8708673 1.062078687 1.112748417 0.659221827 0.906450473 0.794800372 1.244887628 0.789313759 0.699570151 0.709410663 1 9.063046816 -7.961504392 24.99983553 0.771581439 0.951999397 0.169682824 0.172473774 265.9577656 172717.9572 0.073010753 0.04922375 1.09E-08 7.961504392 0.180417958 RPGAPSLS(ph)PAPR ddPTM_K562_Paclitaxel_30min_R1 4 RPGAPSLSPAPR 12 1 Q5QP82;Q5QP82-2 Q5QP82 DCAF10 DDB1- and CUL4-associated factor 10 1 RPGAPSLS(1)PAPR;RPGAPS(0.004)LS(0.996)PAPR;RPGAPS(0.002)LS(0.998)PAPR;RPGAPS(0.004)LS(0.996)PAPR 98.507 0.0062803 170295000 4779.41 4148.75 5259.8 5051.68 4160.75 4121.79 4355 4534.82 3528.69 5515.6 TRUE FALSE 4846.336486 4601.724555 3931.898438 4727.687855 4727.514592 4852.731584 5181.338515 4149.558736 3867.636441 4391.517692 1.103567565 1.047866564 0.895339314 1.076549882 1.076510428 1.105023804 1.17985145 0.944903112 0.880706105 1 12.1005039 -8.446815047 12.34451535 0.931180292 1.063626437 0.388650318 0.072803246 1.16473158 187.319599 0.042325829 0.020315747 3.57E-09 8.446815047 0.132446146 RPGNST(ph)VTSSPPVT(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 RPGNSTVTSSPPVTPK 16 1 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 2 RPGNS(0.068)T(0.404)VT(0.328)S(0.169)S(0.034)PPVT(0.997)PK 112.55 0.00041731 0 1631.9 1519.4 2834.6 1774.9 1533.7 1299.1 1366.4 1763.9 1693.7 2347.2 TRUE FALSE 1654.751635 1685.29323 2118.970172 1661.065858 1742.615906 1529.477145 1625.667267 1614.045685 1856.387453 1868.839352 0.885443488 0.901786036 1.133842869 0.888822176 0.932458911 0.818410177 0.869880691 0.863662082 0.993337095 1 10.86792684 RPGQSFHVNSEVNSVLS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 RPGQSFHVNSEVNSVLSPR 19 1 H0YEH2;Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3 H0YEH2 PUM1 Pumilio homolog 1 1 RPGQSFHVNSEVNS(0.057)VLS(0.943)PR;RPGQSFHVNSEVNS(0.04)VLS(0.96)PR;RPGQSFHVNSEVNS(0.101)VLS(0.899)PR;RPGQSFHVNSEVNS(0.114)VLS(0.886)PR 129.2 2.47E-07 255761000 5914.9 5119.09 5699.4 5785.5 5052.22 5217.07 4873.79 5882.11 5349.21 6502.1 TRUE FALSE 5997.726849 5678.009558 4260.515981 5414.443925 5740.417899 6142.244113 5798.56621 5382.388041 5863.025521 5176.968451 1.158540352 1.096782724 0.822975071 1.045871532 1.108837721 1.186455775 1.120069837 1.039679514 1.132521007 1 12.33789181 -6.666952298 5.156760653 1.105247061 1.018461757 0.105760512 0.093351692 0.422373487 18.2029326 0.029146009 0.037676762 2.15E-07 6.666952298 -0.086785304 RPIS(ph)DDDCPSASK ddPTM_K562_Paclitaxel_30min_R1 3 RPISDDDCPSASK 13 1 Q96PU4 Q96PU4 UHRF2 E3 ubiquitin-protein ligase UHRF2 1 RPIS(1)DDDCPSASK;RPIS(0.555)DDDCPS(0.443)AS(0.002)K;RPIS(0.999)DDDCPS(0.001)ASK 147.7 0.00028765 26139800 5886.9 4566.8 9186.4 6544.4 5054.6 4212.3 4104.7 6546.8 5555.2 7131.1 TRUE FALSE 5969.334763 5065.418668 6867.179704 6124.671476 5743.122095 4959.292261 4883.545397 5990.608476 6088.801781 5677.777906 1.051350522 0.892148082 1.209483678 1.078709238 1.011508761 0.873456543 0.860115608 1.05509736 1.072391679 1 12.4711107 -7.000950125 18.72337998 0.96574233 1.055433306 0.150045209 0.095476533 2.909482643 57375.26582 0.031969831 0.035503445 9.98E-08 7.000950125 0.089690976 RPLDS(ph)PEAEELPAMK ddPTM_K562_Paclitaxel_30min_R1 2 RPLDSPEAEELPAMK 15 1 Q5VWG9 Q5VWG9 TAF3 Transcription initiation factor TFIID subunit 3 1 RPLDS(1)PEAEELPAMK;RPLDS(1)PEAEELPAMK 133.93 1.16E-05 90467000 9599.7 8562.9 14934.6 9948.4 7944.3 7584.1 7638.5 10347 8588 12558.6 TRUE FALSE 9734.125418 9497.82638 11164.17552 9310.354151 9026.448158 8929.033649 9087.865499 9467.957766 9412.915772 9999.150426 0.973495247 0.949863336 1.116512408 0.93111452 0.902721509 0.89297923 0.908863765 0.946876221 0.941371554 1 13.28758981 -6.477028812 24.99991936 0.925499567 1.009758641 0.35744926 0.049407698 444.2312738 242219.2041 0.013785244 0.020445822 3.33E-07 6.477028812 0.084259073 RPLEEDWR ddPTM_K562_Paclitaxel_30min_R1 2 RPLEEDWR 8 1 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 0 ; 131.22 0.00024988 13382700 3590.2 4258.1 4640 5082.2 4119.6 3795.3 4332.9 4702.7 3913.3 4653.8 FALSE TRUE 3640.473877 4723.013758 3468.574613 4756.250439 4680.759265 4468.343166 5155.045156 4303.176282 4289.18995 3705.353005 0.982490432 1.2746461 0.93609829 1.28361601 1.263242465 1.205915647 1.391242656 1.161340438 1.157565809 1 11.85539528 -5.247120869 23.58050248 1.195701802 0.982490104 0.180593089 0.128526902 1898.863994 3127036.211 0.031370733 0.609127998 5.66E-06 5.247120869 -0.213211698 RPLFLAPDFDRWLDES(ph)DAEMELR ddPTM_K562_Paclitaxel_30min_R1 2 RPLFLAPDFDRWLDESDAEMELR 23 2 H3BS72;Q9P035;H3BPZ1 H3BS72 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 1 RPLFLAPDFDRWLDES(1)DAEMELR;RPLFLAPDFDRWLDES(1)DAEMELR 70.449 0.0077416 41800000 1515.28 1450.76 1315.3 1324.47 1172.96 1274.54 2059.79 2266.5 1896.31 2682.4 TRUE FALSE 1536.498595 1609.158883 983.2362476 1239.524422 1332.73701 1500.561774 2450.6244 2073.946678 2078.459048 2135.725408 0.719427034 0.753448396 0.460375779 0.580376306 0.624020769 0.702600516 1.147443576 0.971073655 0.97318646 1 11.06051045 -7.646628441 5.439222931 1.01880809 0.626734948 0.821828655 0.087753609 0.089954553 3.932214793 0.036436887 0.027877399 2.26E-08 7.646628441 -0.392073142 RPLPVES(ph)PDTQR ddPTM_K562_Paclitaxel_30min_R1 2 RPLPVESPDTQR 12 1 P57682 P57682 KLF3 Krueppel-like factor 3 1 RPLPVES(0.996)PDT(0.004)QR;RPLPVES(0.993)PDT(0.007)QR 99.238 0.0060968 107356000 2276.18 2123.78 2360.3 2582.82 2274.32 1913.43 2468.2 2525 1980.51 3103.1 TRUE FALSE 2308.053543 2355.661483 1764.413073 2417.169485 2584.120889 2252.749945 2936.528065 2310.485489 2170.746835 2470.686517 0.934174986 0.9534441 0.714138787 0.978339206 1.045912086 0.911791087 1.188547412 0.935159306 0.878600672 1 11.27069626 -6.492243249 24.6124027 0.997262791 0.870932952 0.244987379 0.099799329 800.6636832 643248.7802 0.028231446 0.04180987 3.22E-07 6.492243249 -0.126329839 RPMDSLDS(ph)RLSPPAGLFTSAR ddPTM_K562_Paclitaxel_30min_R1 1 RPMDSLDSRLSPPAGLFTSAR 21 2 K7EK35;P42229;P42229-2 K7EK35 STAT5A Signal transducer and activator of transcription;Signal transducer and activator of transcription 5A 1 RPMDS(0.042)LDS(0.744)RLS(0.214)PPAGLFT(0.001)SAR 48.053 0.030062 539070000 635.69 814.25 819.16 748.84 625.04 762.3 803.55 1007.5 999.99 1552.7 TRUE FALSE 644.5916213 903.1525686 612.3529268 700.8127541 710.18103 897.4832018 956.0194177 921.9065864 1096.043508 1236.258888 0.521405045 0.730552943 0.495327421 0.566881873 0.574459797 0.725967037 0.773316517 0.745722919 0.886580892 1 10.27176518 -8.371246471 0.593331947 0.995992511 0.568943031 0.806321525 0.068336231 0.332190699 0.253186921 0.067988122 0.037046587 4.25E-09 8.371246471 -0.42704948 RPMEFEAALLSPGS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 RPMEFEAALLSPGSPK 16 1 B4DQP0;Q9H9L7-2;Q9H9L7 B4DQP0 AKIRIN1 Akirin-1 1 RPMEFEAALLS(0.001)PGS(0.999)PK 86.258 0.0088286 8169900 1828.5 1532.7 2924.8 1980.1 1312.8 1427.3 1395.1 2272.1 1620.1 3170.5 TRUE FALSE 1854.104641 1700.045369 2186.398067 1853.105249 1491.625586 1680.411615 1659.812942 2079.070923 1775.717844 2524.35036 0.734487839 0.673458564 0.866123063 0.734091938 0.590894834 0.665680819 0.657520829 0.823606325 0.703435574 1 11.30169644 -9.923755579 0.891496136 1.003763763 0.710459247 0.553418772 0.076382258 4.361679747 3.538241888 0.1320023 0.02600035 1.19E-10 9.923755579 -0.293304516 RPNEDS(ph)DEDEEKGAVVPPVHDIYR ddPTM_K562_Paclitaxel_30min_R1 2 RPNEDSDEDEEKGAVVPPVHDIYR 24 2 H0YE74;E9PLP8;Q12996 H0YE74 CSTF3 Cleavage stimulation factor subunit 3 1 RPNEDS(1)DEDEEKGAVVPPVHDIYR;RPNEDS(1)DEDEEKGAVVPPVHDIYR 64.349 0.0023581 452032000 3671.3 2941.35 5780.4 4107.6 2704.83 2892.72 2514.19 3703.73 3199.08 4597.3 TRUE FALSE 3722.709527 3262.49654 4321.066529 3844.156921 3073.273639 3405.703276 2991.244428 3389.075019 3506.365928 3660.367736 1.017031565 0.891302944 1.18050066 1.050210579 0.839607892 0.930426537 0.817197791 0.925883753 0.95792723 1 11.83777288 -6.74759806 24.99990459 0.904331883 1.03492438 0.34793808 0.082051946 261.7804304 472820.2282 0.024567224 0.031549206 1.79E-07 6.74759806 0.130592497 RPNPDILDHER ddPTM_K562_Paclitaxel_30min_R1 2 RPNPDILDHER 11 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L0N7 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 0 ; 147.62 0.0001449 14190400 4128.4 4266.8 4969.7 4534.5 4415.3 4396.9 4232.2 4600.5 4678.3 4374.6 FALSE TRUE 4186.210337 4732.663653 3715.037771 4243.677466 5016.738612 5176.628479 5035.237856 4209.65881 5127.671618 3483.054119 1.201879211 1.358768337 1.066603516 1.218378274 1.440327494 1.486232571 1.445638708 1.20861137 1.472176843 1 11.76613717 -5.243187981 22.24327877 1.311125097 1.201878776 0.026784957 0.164121301 3368.931437 4105464.687 0.041176053 1.064587228 5.71E-06 5.243187981 -0.109246321 RPPEEDFRHS(ph)PEEDFRQSPQEHFR ddPTM_K562_Paclitaxel_30min_R1 1 RPPEEDFRHSPEEDFRQSPQEHFR 24 3 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 1 RPPEEDFRHS(0.961)PEEDFRQS(0.039)PQEHFR 42.639 0.021797 32239000 486.66 433.76 471.02 531.72 375.91 406.93 373.12 424.48 396.37 360.85 TRUE FALSE 493.4747415 481.1193837 352.1051755 497.6178591 427.1153062 479.0933219 443.9175722 388.4177745 434.4431095 287.3085719 1.71757751 1.674573719 1.225529657 1.731997955 1.486608295 1.667521852 1.545089898 1.351918503 1.512113289 1 8.166457226 -12.88830745 0.234961974 2.39E-18 1.619412086 0.568961921 0.148057826 39.48113393 0.957045223 19.84192326 0.257448781 1.29E-13 12.88830745 1.619412086 RPPES(ph)PPIVEEWNSR ddPTM_K562_Paclitaxel_30min_R1 1 RPPESPPIVEEWNSR 15 1 A0A3B3IU46;Q9BTL3 A0A3B3IU46 FAM103A1 RNMT-activating mini protein 1 RPPES(1)PPIVEEWNSR 67.579 0.030683 101500000 546.45 441.18 485.07 466.06 365.75 580.88 472.46 461.72 606.45 400.85 TRUE FALSE 554.1019859 489.3495244 362.6080792 436.1689976 415.5713422 683.890912 562.1068186 422.494004 664.7022322 319.15655 1.736144804 1.533258598 1.136144877 1.366630256 1.302092475 2.142807071 1.761226015 1.323782965 2.082683975 1 8.318120446 RPPS(ph)PDVIVLS(ph)DNEQPS(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 2 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 3 RPPS(1)PDVIVLS(0.982)DNEQPS(0.559)S(0.459)PR;RPPS(1)PDVIVLS(0.91)DNEQPS(0.589)S(0.501)PR 96.181 0.00055018 580440000 1828.21 1550.5 1820.26 1846.3 1328.28 1346.67 1466.48 1848.19 1005.84 1918.22 TRUE FALSE 1853.810581 1719.788833 1360.71285 1727.886582 1509.214224 1585.483016 1744.736924 1691.174723 1102.455426 1527.285711 1.213794228 1.12604264 0.890935364 1.131344692 0.988167579 1.038105054 1.14237756 1.10730737 0.721839678 1 10.57675426 -5.532320648 23.57867734 1.016150366 1.191856414 0.247808199 0.119087095 119.7334069 299004.0362 0.029609366 0.078623922 2.94E-06 5.532320648 0.175706049 RPPS(ph)PDVIVLS(ph)DNEQPS(ph)SPRVNGLTTVALK ddPTM_K562_Paclitaxel_30min_R1 1 RPPSPDVIVLSDNEQPSSPRVNGLTTVALK 30 2 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 3 RPPS(1)PDVIVLS(0.995)DNEQPS(0.493)S(0.493)PRVNGLT(0.01)T(0.01)VALK 60.207 0.00091337 18332000 2510.6 2494.7 3690 3006.1 2184.3 2097 2260.7 2952.4 2924.4 3618.1 TRUE FALSE 2545.756146 2767.079783 2758.413863 2813.302201 2481.838641 2468.873507 2689.656023 2701.575192 3205.301687 2880.729234 0.883719343 0.960548374 0.957540136 0.976593762 0.861531383 0.85703074 0.93367193 0.937809482 1.112670239 1 11.49221835 -8.664896998 6.585832949 1.054928048 0.920735531 0.576779851 0.046495077 0.148487659 8.351855195 0.033832219 0.012389467 2.16E-09 8.664896998 -0.134192516 RPPS(ph)PDVIVLS(ph)DNEQPSSPR ddPTM_K562_Paclitaxel_30min_R1 4 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 2 RPPS(1)PDVIVLS(0.933)DNEQPS(0.057)S(0.011)PR;RPPS(1)PDVIVLS(0.572)DNEQPS(0.362)S(0.066)PR;RPPS(1)PDVIVLS(0.908)DNEQPS(0.072)S(0.021)PR;RPPS(1)PDVIVLS(0.918)DNEQPS(0.046)S(0.037)PR 201.61 1.41E-121 466861100 6394 6588.56 7291.32 8195.2 6475.82 7338.8 6433.65 7529.9 6474.92 7811.5 TRUE FALSE 6483.535727 7307.921262 5450.536088 7669.596552 7357.936321 8640.233138 7654.401502 6890.187995 7096.864997 6219.512012 1.042450873 1.174999139 0.87636073 1.233150854 1.183040777 1.389213996 1.230707729 1.107834181 1.141064602 1 12.60258567 -5.255451162 22.70641641 1.15716951 1.042450696 0.051955229 0.131248645 608.9353845 2308730.667 0.034074569 0.285127548 5.55E-06 5.255451162 -0.114718814 RPPS(ph)PDVIVLSDNEQPS(ph)S(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 3 RPPS(1)PDVIVLS(0.471)DNEQPS(0.785)S(0.743)PR 70.504 0.0075886 27544000 1524.7 1331.2 2186 1542.1 1242.5 1004 1227.2 1423 815.6 1598.1 TRUE FALSE 1546.050504 1476.544918 1634.117264 1443.196608 1411.749536 1182.045303 1460.054794 1302.107268 893.9420242 1272.406343 1.215060356 1.16043505 1.28427312 1.134226198 1.109511552 0.928984133 1.147475256 1.023342327 0.702560176 1 10.31334375 -7.355711555 0.652469512 0.905476011 1.228463209 0.538968391 0.107098876 0.627096932 0.576569355 0.086453466 0.083672272 4.41E-08 7.355711555 0.322987198 RPPS(ph)PDVIVLSDNEQPS(ph)S(ph)PRVNGLTTVALK ddPTM_K562_Paclitaxel_30min_R1 1 RPPSPDVIVLSDNEQPSSPRVNGLTTVALK 30 2 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 3 RPPS(1)PDVIVLS(0.507)DNEQPS(0.614)S(0.841)PRVNGLT(0.017)T(0.021)VALK 54.3 0.0032327 23975000 2931.1 2733.1 5176.1 3377.3 2758.1 2826.5 2521.5 3860.8 3931 3907.4 TRUE FALSE 2972.144443 3031.509101 3869.329538 3160.695094 3133.799915 3327.740089 2999.941462 3532.800942 4308.590114 3111.069735 0.955344848 0.974426599 1.243729607 1.01595122 1.007306226 1.069644969 0.964279723 1.135558262 1.384922384 1 11.60319502 -8.519570881 24.99600201 1.215054241 1.039390927 0.236979244 0.116738067 177.5446578 1341682.72 0.072546321 0.028644182 3.02E-09 8.519570881 -0.175663314 RPPS(ph)PDVIVLSDNEQPS(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 2 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 2 RPPS(1)PDVIVLS(0.015)DNEQPS(0.537)S(0.448)PR;RPPS(1)PDVIVLSDNEQPS(0.57)S(0.43)PR 185.89 4.22E-16 412950000 3203.9 2914.4 3406 3312.1 2730.66 2901.8 2735.8 3126.3 2139.42 3467.1 TRUE FALSE 3248.764485 3232.604048 2546.113175 3099.67673 3102.622122 3416.393487 3254.903768 2860.701301 2344.92085 2760.503117 1.176874051 1.171019887 0.922336642 1.122866593 1.12393357 1.237598127 1.179098023 1.036297073 0.849454158 1 11.43071551 -8.533843021 5.236349943 0.926611386 1.12901141 0.489928754 0.085218372 0.153843361 13.04766063 0.060319668 0.023381721 2.93E-09 8.533843021 0.202400024 RPPS(ph)PDVIVLSDNEQPSSPR ddPTM_K562_Paclitaxel_30min_R1 1 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 RPPS(1)PDVIVLSDNEQPSSPR 120.9 4.74E-06 0 937.41 932.45 1174.6 938.41 1078.6 1011.2 772.89 1121.1 740.59 899.65 TRUE FALSE 950.5366322 1034.258044 878.0577027 878.2245828 1225.523581 1190.522122 919.5418427 1025.855557 811.7269785 716.3008362 1.32700757 1.443887808 1.225822529 1.226055504 1.710906255 1.662042067 1.283736939 1.43215742 1.133220761 1 9.484421816 -10.81926598 9.241339896 0.99999992 1.391738796 0.29264667 0.178030946 0 0 0.181283618 0.043967736 1.52E-11 10.81926598 0.391738876 RPPSPDVIVLS(ph)DNEQPSSPR ddPTM_K562_Paclitaxel_30min_R1 2 RPPSPDVIVLSDNEQPSSPR 20 1 Q86YP4-2;Q86YP4;Q86YP4-3;C9JMI3;C9JGN4;C9JHD7;C9JJK9 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 RPPSPDVIVLS(0.903)DNEQPS(0.063)S(0.034)PR;RPPSPDVIVLS(0.999)DNEQPS(0.001)SPR 108.64 0.00016778 33433000 1983.92 1803.23 2029.41 2051.94 1697.4 2065.64 1708.87 1648.59 1978.86 2431.16 TRUE FALSE 2011.701001 2000.11275 1517.060346 1920.337753 1928.614617 2431.952251 2033.119162 1508.531989 2168.938345 1935.688258 1.039269104 1.033282473 0.78373175 0.992069743 0.996345672 1.25637599 1.050333985 0.779325898 1.12049982 1 10.91863091 -5.560394596 24.99992547 0.994250557 1.037775964 0.013090972 0.133547437 917.9250538 611687.0359 0.035575038 0.094123342 2.75E-06 5.560394596 0.043525408 RPQS(ph)PGAS(ph)PSQAER ddPTM_K562_Paclitaxel_30min_R1 1 RPQSPGASPSQAER 14 1 Q96T58;A0A669KB49 Q96T58 SPEN Msx2-interacting protein 2 RPQS(1)PGAS(0.997)PS(0.003)QAER 129.42 0.00035184 5848100 2132.3 1453.9 2087.6 2118.1 1823.5 1565.7 1676.3 1806.5 1168.2 2003.8 TRUE FALSE 2162.158779 1612.641719 1560.559561 1982.254546 2071.891572 1843.354911 1994.369174 1653.026549 1280.41083 1595.42446 1.35522479 1.010791648 0.978146945 1.242462176 1.298645987 1.155400934 1.250055533 1.036104554 0.802551836 1 10.63972459 -8.515796457 5.151655482 0.902769249 1.174092624 0.474955224 0.119980156 0.156298326 12.92063115 0.080274348 0.032457385 3.05E-09 8.515796457 0.271323375 RPQS(ph)PGASPS(ph)QAER ddPTM_K562_Paclitaxel_30min_R1 1 RPQSPGASPSQAER 14 1 Q96T58;A0A669KB49 Q96T58 SPEN Msx2-interacting protein 2 RPQS(0.984)PGAS(0.029)PS(0.987)QAER 93.342 0.013287 2326900 1389 1492.8 1629 1324.9 1414.3 1215.2 1314.8 1567 1022.1 1484.8 TRUE FALSE 1408.450285 1655.788952 1217.738803 1239.926844 1606.951604 1430.698658 1564.276436 1433.873569 1120.277272 1182.196945 1.191383797 1.400603308 1.030064244 1.048832726 1.359292638 1.210203312 1.32319445 1.212888914 0.947623217 1 10.20725468 -8.755961806 23.47911102 0.973811488 1.223386094 0.430612236 0.114175412 54.63352774 234200.128 0.085068643 0.029954588 1.75E-09 8.755961806 0.249574606 RPQS(ph)PGASPSQAER ddPTM_K562_Paclitaxel_30min_R1 1 RPQSPGASPSQAER 14 1 Q96T58;A0A669KB49 Q96T58 SPEN Msx2-interacting protein 1 RPQS(1)PGASPSQAER 77.505 0.027657 3243300 276.53 184.97 441.49 450.06 419.59 398.77 365.39 378.27 241.38 179.81 TRUE FALSE 280.4022732 205.1656501 330.0303892 421.195166 476.7452617 469.4862605 434.720845 346.1336024 264.5656275 143.1646233 1.958600293 1.433075053 2.305250987 2.942033837 3.330049357 3.279345481 3.036510243 2.417731381 1.847981865 1 7.161531229 -5.955803752 4.720150685 2.690020609 1.708466003 0.174183589 0.687336552 0.269997865 13.532185 0.182975064 0.390459678 1.11E-06 5.955803752 -0.981554606 RPQS(ph)PGASPSQAERLPSDSER ddPTM_K562_Paclitaxel_30min_R1 1 RPQSPGASPSQAERLPSDSER 21 2 Q96T58;A0A669KB49 Q96T58 SPEN Msx2-interacting protein 1 RPQS(0.99)PGAS(0.007)PS(0.002)QAERLPSDSER 48.371 0.029573 43568000 246.66 235.26 360 411.87 295.59 237.97 173.61 220.79 256.82 305.84 TRUE FALSE 250.114001 260.9464824 269.1135476 385.4545017 335.8543624 280.1706382 206.5515912 202.0325114 281.4887085 243.5096401 1.027121558 1.071606374 1.105145355 1.582912699 1.379224092 1.150552553 0.848227574 0.829669459 1.155965359 1 7.927835077 -7.600424927 5.495306667 0.94654998 1.239244763 0.359359231 0.173006422 0.241119861 12.59225688 0.073928444 0.056906943 2.51E-08 7.600424927 0.292694783 RPQYS(ph)NPPVQGEVMEGADNQGAGEQGRPVR ddPTM_K562_Paclitaxel_30min_R1 4 RPQYSNPPVQGEVMEGADNQGAGEQGRPVR 30 2 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 1 RPQY(0.461)S(0.539)NPPVQGEVMEGADNQGAGEQGRPVR;RPQY(0.046)S(0.954)NPPVQGEVMEGADNQGAGEQGRPVR;RPQY(0.063)S(0.937)NPPVQGEVMEGADNQGAGEQGRPVR;RPQY(0.164)S(0.836)NPPVQGEVMEGADNQGAGEQGRPVR 91.643 2.83E-07 283949000 1913.21 1791.05 1996.57 2105.55 1869 1944.2 1762.85 2131.19 1779.98 1887.83 TRUE FALSE 1940.000843 1986.602896 1492.51121 1970.509447 2123.589442 2288.976572 2097.341585 1950.132107 1950.955032 1503.08921 1.290675783 1.321679966 0.992962494 1.310973051 1.412816637 1.522848117 1.395354029 1.297416078 1.297963567 1 10.55371492 -5.017334231 14.87995009 1.300022626 1.28556589 0 0.160112852 15609056.72 597599945.1 0.041296375 2873056.288 9.61E-06 5.017334231 -0.014456736 RPQYSNPPVQGEVMEGADNQGAGEQGRPVR ddPTM_K562_Paclitaxel_30min_R1 2 RPQYSNPPVQGEVMEGADNQGAGEQGRPVR 30 2 P67809;H0Y449;C9J5V9 P67809 YBX1 Nuclease-sensitive element-binding protein 1 0 ; 100.44 8.16E-09 56573000 1565.04 1367.06 1506.01 1451.29 1361.14 1242.35 1230.7 1673.08 1638.27 1866.27 FALSE TRUE 1586.955389 1516.320234 1125.799149 1358.210755 1546.550312 1462.663329 1464.2189 1530.941411 1795.633153 1485.92315 1.06799291 1.0204567 0.757642917 0.914051817 1.040801008 0.984346552 0.985393424 1.030296494 1.208429355 1 10.53714379 -8.433906624 3.24892451 1.1077875 0.962462505 0.246260216 0.094164914 0.350275226 6.938732586 0.066743625 0.026598106 3.68E-09 8.433906624 -0.145324996 RPRS(ph)PGSNSKVPEIEVTVEGPNNNNPQTSAVR ddPTM_K562_Paclitaxel_30min_R1 1 RPRSPGSNSKVPEIEVTVEGPNNNNPQTSAVR 32 3 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 RPRS(0.647)PGS(0.232)NS(0.088)KVPEIEVT(0.033)VEGPNNNNPQTSAVR 73.389 7.71E-05 9333600 1628.9 1091.8 2024.3 1512.3 1484.6 1216.7 940.52 978.02 5353.6 1565.1 TRUE FALSE 1651.709626 1211.006416 1513.240429 1415.307847 1686.827654 1432.464662 1118.97876 894.9310964 5867.837201 1246.131761 1.325469487 0.971812495 1.214350261 1.135760994 1.353651121 1.149529052 0.897961833 0.718167311 4.708841701 1 10.28324091 -8.71910678 24.99994443 2.854447007 1.100771658 0.406877768 0.849285454 106.1473022 62686.43925 0.512558211 0.193725362 1.91E-09 8.71910678 -1.753675348 RPS(ph)EGNEPSTK ddPTM_K562_Paclitaxel_30min_R1 1 RPSEGNEPSTK 11 1 F2Z329;A0A087WWU1;Q96Q45-2;Q96Q45;Q96Q45-5;Q96Q45-3 F2Z329 TMEM237 Transmembrane protein 237 1 RPS(1)EGNEPSTK 88.706 0.011722 2978600 2063.2 1804.6 3957.3 2602.1 2030.5 2321 2196.9 3194.5 1803.5 4156.3 TRUE FALSE 2092.091166 2001.632331 2958.230672 2435.212953 2307.088477 2732.596762 2613.750306 2923.107286 1976.734233 3309.243779 0.632196147 0.604860949 0.893929511 0.735882007 0.69716486 0.825746589 0.78983311 0.883315791 0.597337146 1 11.69228586 -15 0.103682325 1.710344226 0.602205681 0.351464249 0.104065057 210.5962635 1.47086296 33.10038872 1.571974133 1.00E-15 15 -1.108138545 RPS(ph)GPAELGTWHALHSVTPR ddPTM_K562_Paclitaxel_30min_R1 2 RPSGPAELGTWHALHSVTPR 20 1 A0A5E8;Q99501;Q99501-4 A0A5E8 GAS2L1 GAS2-like protein 1 1 RPS(0.988)GPAELGT(0.012)WHALHSVTPR;RPS(0.98)GPAELGT(0.02)WHALHSVTPR 79.177 0.0019693 32041000 1330.8 1255.32 1026.65 1401.49 1049.12 1198.62 1356.21 1423.21 1458.34 1692.35 TRUE FALSE 1349.435306 1392.380083 767.4595101 1311.604704 1192.027906 1411.178428 1613.543768 1302.299427 1598.420073 1347.448141 1.001474762 1.033345953 0.569565156 0.973399023 0.884655869 1.047297024 1.197481163 0.966493171 1.18625721 1 10.39601403 -7.319012091 3.989248711 1.088979499 0.88581865 0.319797214 0.136890021 0.281549973 9.199898988 0.049906115 0.044527652 4.80E-08 7.319012091 -0.203160849 RPS(ph)HCELDLAEGHQPQK ddPTM_K562_Paclitaxel_30min_R1 3 RPSHCELDLAEGHQPQK 17 1 P12980 P12980 LYL1 Protein lyl-1 1 RPS(1)HCELDLAEGHQPQK;RPS(1)HCELDLAEGHQPQK;RPS(1)HCELDLAEGHQPQK 76.118 0.0090652 84773000 3438.92 2827.42 5011.3 4163.75 3274.95 2767.83 2821.03 4018.8 3574.01 4321.5 TRUE FALSE 3487.07549 3136.127277 3746.135336 3896.705711 3721.053635 3258.665788 3356.305716 3677.377855 3917.30963 3440.775928 1.01345614 0.911459317 1.088747252 1.132507839 1.081457704 0.947072944 0.975450243 1.06876412 1.138496 1 11.74851823 -5.767566369 24.99993988 1.053669329 0.962457724 0.245744143 0.064190877 200.4569108 817935.9472 0.018189958 0.039481412 1.71E-06 5.767566369 -0.091211605 RPS(ph)PGEMR ddPTM_K562_Paclitaxel_30min_R1 2 RPSPGEMR 8 1 A0A0G2JHC2;Q6NYC8;Q6NYC8-3;Q6NYC8-2 A0A0G2JHC2 PPP1R18 Phostensin 1 RPS(1)PGEMR;RPS(1)PGEMR 101.3 0.0083091 9165800 869.74 826.07 1082.64 896.49 791.31 851.66 1077.13 834.04 672.29 1091.22 TRUE FALSE 881.9190434 916.2631162 809.3141421 838.9931439 899.099819 1002.689943 1281.509795 763.1830961 736.8664584 868.828765 1.01506658 1.054595742 0.93150017 0.965659952 1.03484122 1.154070841 1.474985459 0.878404499 0.848114713 1 9.762928058 -5.248175709 19.24220497 1.045811868 1.015066049 0 0.16876229 1293.974266 1876295.977 0.044941835 0.608589569 5.65E-06 5.248175709 -0.030745819 RPS(ph)PPEPWDEEDGASCSTFFGSEER ddPTM_K562_Paclitaxel_30min_R1 1 RPSPPEPWDEEDGASCSTFFGSEER 25 1 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 RPS(1)PPEPWDEEDGASCSTFFGSEER 68.569 0.0011432 10144000 975.25 1136.1 1148.7 1318.9 1397.7 1088.1 769.85 958.17 1016.2 870.29 TRUE FALSE 988.9065089 1260.14324 858.6964781 1234.311657 1588.090403 1281.059257 915.9250186 876.7674778 1113.810551 692.9244203 1.427149167 1.818586852 1.23923541 1.781307775 2.291866698 1.848771987 1.321825284 1.265314733 1.607405538 1 9.436554191 -8.725337682 0.840037097 1.072838741 1.71517813 0.301365273 0.303080132 0.769768647 1.163154685 0.310399944 0.118015642 1.88E-09 8.725337682 0.642339389 RPS(ph)PQPSPR ddPTM_K562_Paclitaxel_30min_R1 4 RPSPQPSPR 9 1 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 RPS(0.996)PQPS(0.004)PR;RPS(0.999)PQPS(0.001)PR;RPS(1)PQPSPR;RPS(1)PQPSPR 96.334 0.0077869 10022600 769.73 562.92 741.18 768.219 612.84 780.25 520.45 687.99 588.26 717.71 TRUE FALSE 780.5085948 624.3815093 554.0599422 718.9488718 696.3191835 918.6163822 619.2026706 629.5409552 644.7650014 571.440308 1.365861987 1.092645199 0.969584984 1.258134685 1.218533544 1.607545651 1.083582418 1.101674044 1.128315578 1 9.158458994 RPS(ph)QEQSASASSGQPQAPLNR ddPTM_K562_Paclitaxel_30min_R1 4 RPSQEQSASASSGQPQAPLNR 21 1 Q5T1M5-2;Q5T1M5 Q5T1M5-2 FKBP15 FK506-binding protein 15 1 RPS(1)QEQSASASSGQPQAPLNR;RPS(1)QEQSASASSGQPQAPLNR;RPS(0.941)QEQS(0.059)ASASSGQPQAPLNR;RPS(1)QEQSASASSGQPQAPLNR 218.42 1.08E-36 201770700 2593.38 2366.97 3030.88 2779.85 2364.97 2518.46 2334.27 2764.89 1672.94 3301.96 TRUE FALSE 2629.695321 2625.403789 2265.696859 2601.562863 2687.118953 2965.07352 2777.185547 2529.995337 1833.633362 2629.01874 1.000257351 0.998624981 0.861803237 0.989556607 1.022099581 1.127825175 1.056358216 0.962334463 0.697459221 1 11.36030871 -8.540146686 24.98883991 0.842451889 1.006720641 0.318263779 0.091985848 280.2133915 405495.2524 0.062426497 0.023605695 2.88E-09 8.540146686 0.164268752 RPS(ph)QNAISFFNVGHSK ddPTM_K562_Paclitaxel_30min_R1 1 RPSQNAISFFNVGHSK 16 1 Q9BXB4 Q9BXB4 OSBPL11 Oxysterol-binding protein-related protein 11 1 RPS(1)QNAISFFNVGHSK 112.82 0.00044161 0 1335 1308.1 2247.3 1814.4 1603.5 1640.1 1624.4 2545.8 1858.2 3228.3 TRUE FALSE 1353.694119 1450.922782 1679.941321 1698.032505 1821.923847 1930.948707 1932.62142 2329.5184 2036.688413 2570.370688 0.526653266 0.564479975 0.653579396 0.660617752 0.708817548 0.751233554 0.751884321 0.906296672 0.792371475 1 11.32776072 -5.19464038 0.145020772 1.097864161 2.11E-12 0.929409123 0.036489964 6.148393909 0.148539297 0.189504401 1.313264097 6.39E-06 5.19464038 -1.097864161 RPS(ph)TEDTHEVDSK ddPTM_K562_Paclitaxel_30min_R1 1 RPSTEDTHEVDSK 13 1 H0YLN8;Q96QT4 H0YLN8 TRPM7 Transient receptor potential cation channel subfamily M member 7 1 RPS(0.95)T(0.049)EDT(0.001)HEVDSK 74.812 0.026322 10337000 1589.1 1526.5 2588.3 1760.5 1391.3 1704 1332.5 1619 2056.7 2205 TRUE FALSE 1611.352303 1693.168432 1934.851653 1647.58941 1580.818615 2006.180475 1585.334919 1481.455845 2254.255225 1755.61979 0.917825324 0.964427744 1.102090364 0.938465959 0.900433354 1.142719219 0.903005838 0.843836378 1.284022451 1 10.77776472 -8.758165085 24.9999813 1.142011197 0.969651843 0.30182865 0.10796991 97.98747404 748203.8185 0.077871304 0.026669445 1.75E-09 8.758165085 -0.172359354 RPS(ph)VNGEPGSVPPPR ddPTM_K562_Paclitaxel_30min_R1 2 RPSVNGEPGSVPPPR 15 1 Q8N3D4 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 RPS(0.999)VNGEPGS(0.001)VPPPR;RPS(1)VNGEPGSVPPPR 106.35 0.0050805 18590400 1240.7 1040.35 1511.88 1318.39 1265.78 1266.27 1479.23 1600.85 1321.54 1703.06 TRUE FALSE 1258.073628 1153.938931 1130.187195 1233.834366 1438.200666 1490.825205 1759.90617 1464.8478 1448.479822 1355.975437 0.927799718 0.851002828 0.833486481 0.909923832 1.060639173 1.099448533 1.297889418 1.080290808 1.068219808 1 10.40511533 -6.81086181 2.476941994 1.124153519 0.867636689 0.677655212 0.075107439 0.160464158 2.014305137 0.025602972 0.031440457 1.55E-07 6.81086181 -0.25651683 RPSASS(ph)PNNNTAAK ddPTM_K562_Paclitaxel_30min_R1 1 RPSASSPNNNTAAK 14 1 O75151;E7ET14;A0A087WW48 O75151 PHF2 Lysine-specific demethylase PHF2 1 RPS(0.02)AS(0.169)S(0.808)PNNNT(0.002)AAK 72.21 0.028552 6709500 1983.5 1988.6 3912.2 2315.5 2035.2 1753.1 1830.7 2445.8 2269.6 2647.3 TRUE FALSE 2011.27512 2205.722073 2924.516725 2166.994194 2312.428696 2063.98767 2178.065768 2238.014024 2487.605221 2107.778807 0.954215458 1.046467526 1.387487489 1.028093739 1.097092678 0.979224036 1.03334646 1.061787896 1.180202217 1 11.04150776 RPSQGPPARS(ph)PSQDFSFIEDTEILDSAMYR ddPTM_K562_Paclitaxel_30min_R1 1 RPSQGPPARSPSQDFSFIEDTEILDSAMYR 30 2 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 RPS(0.021)QGPPARS(0.487)PS(0.487)QDFS(0.004)FIEDTEILDSAMYR 78.221 0.00024194 20903000 390.31 300.18 467.06 199.44 246.88 274.7 237.25 295.11 432.45 221.76 TRUE FALSE 395.7755442 332.9546675 349.1449265 186.6488111 280.5092357 323.414188 282.266949 270.0385635 473.9887547 176.5651903 2.24152645 1.885732216 1.977427861 1.057109902 1.588700668 1.831698465 1.598655706 1.529398649 2.684497176 1 7.464057134 -6.032577626 24.90907348 1.632814323 2.030617454 0.16046883 0.442353166 1158.62703 885893.1949 0.117474822 0.203684485 9.28E-07 6.032577626 0.397803131 RPSS(ph)LQSLFGLPEAAGAR ddPTM_K562_Paclitaxel_30min_R1 2 RPSSLQSLFGLPEAAGAR 18 1 A0A2R8YDI1;A0A2R8Y852;P39880-6;P39880-4;P39880-5;P39880-2;P39880;P39880-3 A0A2R8YDI1 CUX1 Homeobox protein cut-like 1 1 RPS(0.125)S(0.873)LQS(0.002)LFGLPEAAGAR;RPS(0.023)S(0.977)LQS(0.001)LFGLPEAAGAR 86.479 0.0093126 8955600 1416.88 1342.61 1517.63 1643.5 1274.69 1364.5 1408.61 1598.53 1361.24 1615.52 TRUE FALSE 1436.720691 1489.2007 1134.485537 1538.093266 1448.324359 1606.474916 1675.886394 1462.724899 1491.993184 1286.276137 1.116961319 1.157761275 0.881992213 1.195772215 1.125982452 1.248934712 1.302897835 1.137177979 1.159932258 1 10.32898468 RPSS(ph)TALHQHHF ddPTM_K562_Paclitaxel_30min_R1 1 RPSSTALHQHHF 12 1 Q9UGP4 Q9UGP4 LIMD1 LIM domain-containing protein 1 1 RPS(0.216)S(0.392)T(0.392)ALHQHHF 86.756 0.0092649 3133600 684.79 643.81 664.83 795.58 713.88 653.75 752.61 754.26 718.5 1014.2 TRUE FALSE 694.3791728 714.103353 496.985444 744.5550597 811.1225421 769.6833834 895.4138186 690.1809051 787.5151353 807.5054833 0.859906449 0.884332513 0.615457671 0.922043348 1.004479299 0.953161804 1.108864072 0.854707391 0.975244319 1 9.657328246 -6.507849484 24.03673893 0.978755778 0.791743595 0.494919278 0.088539357 351.6545255 562411.4176 0.025087143 0.035779265 3.11E-07 6.507849484 -0.187012183 RPT(ph)LTTFFGR ddPTM_K562_Paclitaxel_30min_R1 1 RPTLTTFFGR 10 1 P16150;C9JUK7 P16150 SPN Leukosialin 1 RPT(0.995)LT(0.004)T(0.001)FFGR 88.163 0.023766 5245900 321.3 264.71 305.39 243.85 304.72 388.47 565.88 655.94 502.66 1057.5 TRUE FALSE 325.7991913 293.611933 228.2905175 228.2105524 346.228023 457.3597001 673.2527759 600.2138028 550.9427389 841.9809195 0.386943675 0.348715661 0.271135025 0.271040052 0.411206495 0.543194851 0.79960574 0.71285915 0.654341121 1 9.71764373 -7.454326493 1.816813283 0.774923423 0.319960562 0.841209671 0.092872747 0.136121776 0.896636689 0.041109052 0.032681957 3.51E-08 7.454326493 -0.454962861 RPTPNDDTLDEGVGLVHS(ph)NIATEHIPSPAKK ddPTM_K562_Paclitaxel_30min_R1 1 RPTPNDDTLDEGVGLVHSNIATEHIPSPAKK 31 2 Q01581 Q01581 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" 1 RPTPNDDTLDEGVGLVHS(0.512)NIAT(0.382)EHIPS(0.107)PAKK 62.069 0.00027891 71367000 1918.7 1241.4 3825.6 1751.8 1304.7 1156.4 1204.2 1962.6 1946.4 2763.9 TRUE FALSE 1945.56772 1376.94025 2859.779966 1639.447389 1482.422229 1361.471303 1432.690664 1795.86488 2133.360417 2200.615663 0.884101551 0.62570683 1.299536313 0.744994874 0.67363977 0.618677458 0.651040837 0.816073842 0.969437986 1 11.10369149 RPTPNDDTLDEGVGLVHSNIAT(ph)EHIPSPAKK ddPTM_K562_Paclitaxel_30min_R1 1 RPTPNDDTLDEGVGLVHSNIATEHIPSPAKK 31 2 Q01581 Q01581 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" 1 RPTPNDDTLDEGVGLVHS(0.055)NIAT(0.556)EHIPS(0.389)PAKK 73.839 2.64E-05 72508000 3057.9 1717.7 5593.5 3196.1 2228.3 1932.4 1772.6 3137.3 2780.8 4308.5 TRUE FALSE 3100.720034 1905.244295 4181.351745 2991.116451 2531.832185 2275.084008 2108.941596 2870.766783 3047.908265 3430.425335 0.903887924 0.555395937 1.218901838 0.871937489 0.738051973 0.663207558 0.614775543 0.836854472 0.888492816 1 11.74417175 -4.902051818 20.02408029 0.81076075 9.423591876 0.01516746 0.18534732 2833.415303 580257.2797 0.045443944 1931.510805 1.25E-05 4.902051818 8.612831126 RPTPNDDTLDEGVGLVHSNIATEHIPS(ph)PAK ddPTM_K562_Paclitaxel_30min_R1 2 RPTPNDDTLDEGVGLVHSNIATEHIPSPAK 30 1 Q01581 Q01581 HMGCS1 "Hydroxymethylglutaryl-CoA synthase, cytoplasmic" 1 RPTPNDDTLDEGVGLVHSNIAT(0.002)EHIPS(0.998)PAK;RPTPNDDTLDEGVGLVHS(0.001)NIAT(0.017)EHIPS(0.982)PAK 118.54 3.68E-13 790790000 6090.1 5732.1 9362.5 6432.9 5253.7 5677 4353.3 6862.5 6514.9 7386.1 TRUE FALSE 6175.38019 6357.950063 6998.821081 6020.322587 5969.342886 6683.736241 5179.315949 6279.487791 7140.685254 5880.808766 1.050090291 1.081135319 1.190112 1.023723577 1.015054752 1.136533512 0.880714908 1.067793231 1.214235242 1 12.52179886 RPTPQDS(ph)PIFLPVDDTSFR ddPTM_K562_Paclitaxel_30min_R1 3 RPTPQDSPIFLPVDDTSFR 19 1 A0A0U1RQF0;P49327 A0A0U1RQF0 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 1 RPT(0.027)PQDS(0.973)PIFLPVDDTSFR;RPT(0.084)PQDS(0.916)PIFLPVDDTSFR;RPT(0.018)PQDS(0.982)PIFLPVDDTSFR 92.428 0.00087591 45459000 3160.2 2833.75 2909.47 2850.28 2659.09 2573.41 3230.81 3455.12 2296.43 4613.6 TRUE FALSE 3204.45255 3143.148408 2174.938315 2667.475798 3021.303077 3029.768131 3843.839332 3161.58599 2517.012362 3673.345788 0.872352546 0.855663635 0.592086463 0.726170623 0.822493512 0.824797965 1.046413693 0.860682923 0.685209754 1 11.84287899 -7.191375894 2.545488534 0.887883399 0.75898954 0.19764546 0.115942344 0.510795116 6.497998818 0.044996122 0.043614609 6.44E-08 7.191375894 -0.128893859 RPVCS(ph)TRSLRMESSGCPMR ddPTM_K562_Paclitaxel_30min_R1 1 RPVCSTRSLRMESSGCPMR 19 3 A0A669KB02 A0A669KB02 1 RPVCS(0.493)T(0.493)RS(0.013)LRMESSGCPMR 45.876 0.027742 10110000 1066.7 894.51 1038.2 1029.7 868.2 674.28 1116.2 1177 605.88 1221.2 TRUE FALSE 1081.637091 992.1756268 776.0935697 963.6596508 986.4635387 793.8540906 1327.993123 1077.006503 664.0774811 972.3187697 1.112430537 1.020422168 0.798188407 0.991094362 1.014547461 0.816454557 1.365800152 1.10766812 0.682983299 1 9.925285561 RPWEEDFR ddPTM_K562_Paclitaxel_30min_R1 2 RPWEEDFR 8 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 0 ; 96.668 0.022746 18116100 4393 4670.5 5472.7 5146 4403.8 4118 5406.6 6023.5 2795.9 6941.2 FALSE TRUE 4454.515554 5180.440985 4091.0492 4815.958593 5003.672117 4848.26948 6432.474126 5511.766077 3064.458687 5526.57963 0.806016714 0.937368378 0.740249752 0.87141757 0.905383158 0.877264023 1.16391594 0.99731958 0.554494623 1 12.43217117 -6.805117945 2.352889154 0.930947568 0.835800708 0.060180955 0.151264326 0.902458148 10.23775469 0.051966982 0.064331585 1.57E-07 6.805117945 -0.09514686 RQAPGVGAVGGGS(ph)PEREEVGAGYNS(ph)EDEYEAAAAR ddPTM_K562_Paclitaxel_30min_R1 2 RQAPGVGAVGGGSPEREEVGAGYNSEDEYEAAAAR 35 2 A0A087WXV6;Q96G74-2;Q96G74-3;Q96G74-5;Q96G74;H7BZQ3 A0A087WXV6 OTUD5 OTU domain-containing protein 5 2 RQAPGVGAVGGGS(0.645)PEREEVGAGY(0.61)NS(0.645)EDEY(0.101)EAAAAR;RQAPGVGAVGGGS(0.769)PEREEVGAGY(0.509)NS(0.545)EDEY(0.176)EAAAAR 45.325 0.0086794 75869000 1218.46 769.97 1410.31 1150.86 722.53 841.18 853.97 997.25 1032.59 1173.44 TRUE FALSE 1235.522199 854.0379285 1054.259798 1077.048991 820.9508185 990.3514622 1016.006349 912.5273879 1131.774883 934.2922839 1.322415074 0.914101447 1.128404693 1.152796624 0.878687358 1.060001757 1.087460923 0.976704404 1.211371326 1 9.867730143 -5.242754721 24.55375663 1.047270046 1.322415381 0.40872822 0.099896596 3283.736701 4315120.974 0.023841268 0.78677662 5.72E-06 5.242754721 0.275145335 RQDDATGAGQDS(ph)ENEVSLVSGHQR ddPTM_K562_Paclitaxel_30min_R1 1 RQDDATGAGQDSENEVSLVSGHQR 24 1 P16157-14;P16157-10;P16157-12;P16157-21;P16157;P16157-3;P16157-16;P16157-5;P16157-8 P16157-14 ANK1 Ankyrin-1 1 RQDDATGAGQDS(1)ENEVSLVSGHQR 105.61 3.06E-06 251090000 715.48 827.36 883.52 738.8 734.78 585.66 472.42 812.74 785.24 912.98 TRUE FALSE 725.4989274 917.6939628 660.4644488 691.4166747 834.8694759 689.5185779 562.0592288 743.692664 860.6658105 726.9141749 0.998053075 1.2624516 0.908586559 0.951166862 1.148511757 0.948555692 0.773212641 1.023081802 1.183999212 1 9.505641228 -7.316967568 24.98838647 0.973927635 1.051584665 0.058148804 0.132443871 916.4794956 412424.3349 0.048748704 0.04299233 4.82E-08 7.316967568 0.07765703 RQDLPSSLPEPETQAPPRS(ph) ddPTM_K562_Paclitaxel_30min_R1 2 RQDLPSSLPEPETQAPPRS 19 2 B5MCT7;P49593-2;P49593 B5MCT7 PPM1F Protein phosphatase 1F 1 RQDLPSSLPEPETQAPPRS(1);RQDLPSSLPEPET(0.021)QAPPRS(0.979) 174.25 4.24E-13 69850000 2025.72 1947.28 2639.2 2352.5 1990.13 1762.2 1852.33 2281.8 2220.1 2321.7 TRUE FALSE 2054.08633 2159.890616 1972.901319 2201.621179 2261.219399 2074.701427 2203.799948 2087.946847 2433.350525 1848.536266 1.111196122 1.168432914 1.067277584 1.191007837 1.2232486 1.122348242 1.192186482 1.129513597 1.316366127 1 10.85216763 -6.291490014 24.71264924 1.174637901 1.120915243 0.077096968 0.079701956 1424.953646 1171831.498 0.020977478 0.031120219 5.11E-07 6.291490014 -0.053722658 RQDPQVVS(ph)PFSR ddPTM_K562_Paclitaxel_30min_R1 2 RQDPQVVSPFSR 12 1 Q12986-3;Q12986-2;Q12986 Q12986-3 NFX1 Transcriptional repressor NF-X1 1 RQDPQVVS(0.999)PFS(0.001)R;RQDPQVVS(0.973)PFS(0.027)R 114.31 0.0027083 94550000 2134.95 1990.2 2166.7 1965.02 1650.04 1697.21 1631.78 2117.03 1787.29 1976.56 TRUE FALSE 2164.845887 2207.496766 1619.689788 1838.992412 1874.803383 1998.186363 1941.401737 1937.175087 1958.96719 1573.735987 1.375609317 1.402710991 1.029200451 1.168552049 1.191307436 1.269708757 1.233626067 1.230940325 1.244787694 1 10.61997782 -12.38740215 1.626904061 3.34E-05 1.234276104 0.342545823 0.098967147 806180.8729 79863.71054 2948770.486 0.028232177 4.10E-13 12.38740215 1.234242659 RQEEIDYRPDGGAGDADFHYR ddPTM_K562_Paclitaxel_30min_R1 2 RQEEIDYRPDGGAGDADFHYR 21 2 Q96S66-4;Q96S66-3;Q96S66-2;Q96S66 Q96S66-4 CLCC1 Chloride channel CLIC-like protein 1 0 ; 61.767 0.0079072 40755000 1201.99 1049.59 1566.32 1367.06 1409.07 1317.49 1110.39 1194.79 1140.79 1894.98 FALSE TRUE 1218.821568 1164.187786 1170.883144 1279.38289 1601.00919 1551.128353 1321.080706 1093.285132 1250.367977 1508.782036 0.807818187 0.771607666 0.776045258 0.847957399 1.06112689 1.028066557 0.875594138 0.724614362 0.828726713 1 10.55916869 -6.524510261 24.97091781 0.913261149 0.788501952 0.294651083 0.093559807 80.4883683 1231883.216 0.031569858 0.041070227 2.99E-07 6.524510261 -0.124759198 RQES(ph)SSSLEMPSGVALEEGAHVLR ddPTM_K562_Paclitaxel_30min_R1 1 RQESSSSLEMPSGVALEEGAHVLR 24 1 P48553 P48553 TRAPPC10 Trafficking protein particle complex subunit 10 1 RQES(0.25)S(0.25)S(0.25)S(0.25)LEMPSGVALEEGAHVLR 84.602 0.00014975 17019000 362.22 359.5 353.55 286.28 241.26 518.14 426.41 149.71 266.53 560.67 TRUE FALSE 367.2921975 398.7514258 264.2919298 267.9192821 274.1236966 610.024854 507.3190715 136.991201 292.1313974 446.4051462 0.822777696 0.893250065 0.592044989 0.600170684 0.614069302 1.366527378 1.136454353 0.306876393 0.654408669 1 8.802209849 RQGLAETAS(ph)PVAVSLR ddPTM_K562_Paclitaxel_30min_R1 1 RQGLAETASPVAVSLR 16 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 RQGLAET(0.001)AS(0.999)PVAVSLR 83.065 0.011062 123690000 1321.8 1127 1784.8 1542.6 1257.2 1211.8 1132.2 1559.7 1344.4 1770.7 TRUE FALSE 1340.309278 1250.049671 1334.205166 1443.66454 1428.451925 1426.695715 1347.02904 1427.19375 1473.535627 1409.830368 0.95068833 0.886666722 0.946358651 1.023998754 1.013208367 1.011962679 0.955454692 1.012315937 1.045186471 1 10.46130587 -6.10263609 4.273367202 1.007203412 0.917994211 0.679670971 0.025842404 0.127086809 3.932052352 0.00721884 0.013302837 7.90E-07 6.10263609 -0.089209201 RQGLAETASPVAVSLRSDGS(ph)ENLCTPQQSR ddPTM_K562_Paclitaxel_30min_R1 1 RQGLAETASPVAVSLRSDGSENLCTPQQSR 30 2 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 RQGLAETASPVAVS(0.227)LRS(0.319)DGS(0.451)ENLCT(0.003)PQQSR 89.297 3.91E-07 9250500 400.68 335.05 532.58 575.83 390.13 326.65 177.83 336.6 329.87 299.39 TRUE FALSE 406.2907562 371.6318921 398.1235921 538.8988411 443.272311 384.5767911 211.5723142 308.003729 361.5554874 238.3741537 1.704424536 1.559027631 1.670162583 2.260726815 1.859565327 1.613332592 0.887563987 1.292102035 1.51675625 1 7.897084006 -7.574009424 6.214407679 1.200172091 1.807224209 0.623066769 0.233818703 0.146210633 12.58387473 0.096151403 0.074486649 2.67E-08 7.574009424 0.607052117 RQLAELETEDGMQES(ph)P ddPTM_K562_Paclitaxel_30min_R1 2 RQLAELETEDGMQESP 16 1 Q96QG7-2;Q96QG7 Q96QG7-2 MTMR9 Myotubularin-related protein 9 1 RQLAELETEDGMQES(1)P;RQLAELETEDGMQES(1)P 197.73 1.42E-52 17968000 3015 2616.21 3140.1 2759.97 2430.57 2444.64 2738.3 2890 2608.92 3009.29 TRUE FALSE 3057.219302 2901.856655 2347.342919 2582.957877 2761.654784 2878.16258 3257.87813 2644.476461 2859.518423 2395.995046 1.275970627 1.211127986 0.979694396 1.078031393 1.152612894 1.201238953 1.359718225 1.103706982 1.193457569 1 11.22640921 -7.052646009 5.624641285 1.189010672 1.128614558 0.008147468 0.112068704 0.719531036 51.43515899 0.038216616 0.038975641 8.86E-08 7.052646009 -0.060396115 RQLQEDQENNLQDNQTSNSS(ph)PCR ddPTM_K562_Paclitaxel_30min_R1 2 RQLQEDQENNLQDNQTSNSSPCR 23 1 Q92576-2;Q92576 Q92576-2 PHF3 PHD finger protein 3 1 RQLQEDQENNLQDNQT(0.053)S(0.022)NS(0.215)S(0.71)PCR;RQLQEDQENNLQDNQTSNS(0.233)S(0.766)PCR 171.94 1.32E-20 84929000 3754.5 3416.8 4189.5 4318.5 3615.1 3788.9 3697.8 4208.9 3494.1 4747.2 TRUE FALSE 3807.074584 3789.857779 3131.80891 4041.530739 4107.537824 4460.808216 4399.438246 3851.327674 3829.723917 3779.718034 1.007237722 1.002682672 0.828582683 1.069267787 1.086731282 1.180196029 1.163959376 1.018945762 1.013230056 1 11.8840629 -6.486339159 22.69336753 1.086740377 0.951336696 0.396464378 0.072835695 196.2592948 121888.5124 0.021591838 0.03200593 3.26E-07 6.486339159 -0.135403681 RQLS(ph)HDHESVGPPSLDAQPNSK ddPTM_K562_Paclitaxel_30min_R1 1 RQLSHDHESVGPPSLDAQPNSK 22 1 Q5T5U3;E7ESW5;A0A1B0GV73;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 RQLS(0.971)HDHES(0.029)VGPPSLDAQPNSK 75.103 0.0054845 0 1583.6 1239.3 2431.7 1576.6 1375.7 1246.6 773.54 1789.3 1230.5 1738 TRUE FALSE 1605.775286 1374.610965 1817.78726 1475.483933 1563.093631 1467.667007 920.3151769 1637.287797 1348.695023 1383.794646 1.160414438 0.993363408 1.313625013 1.066259316 1.129570515 1.06061041 0.665066294 1.183186972 0.974635237 1 10.43441415 -7.530684614 24.99508486 0.955537819 1.127656368 0.261696266 0.140001689 266.2216242 852455.4261 0.052258301 0.040553862 2.95E-08 7.530684614 0.172118548 RQPPVS(ph)PLTLSPGPEAHQGFSR ddPTM_K562_Paclitaxel_30min_R1 2 RQPPVSPLTLSPGPEAHQGFSR 22 1 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 RQPPVS(0.998)PLT(0.002)LSPGPEAHQGFSR;RQPPVS(0.999)PLT(0.001)LSPGPEAHQGFSR 135.63 1.10E-11 36016000 1324.91 1345.03 1345.97 1432.12 1416.07 1356.7 1337.54 1343.91 1496.49 1486.74 TRUE FALSE 1343.462828 1491.884924 1006.163227 1340.270233 1608.962708 1597.291696 1591.331233 1229.736457 1640.234551 1183.741572 1.13492916 1.260313027 0.849985546 1.132232123 1.359217879 1.349358453 1.344323179 1.038855512 1.385635674 1 10.20913844 -4.93210782 10.67775827 1.194976414 0.816295217 0.008962688 0.172938851 217845.6086 1352832.238 0.044255686 1639316.269 1.17E-05 4.93210782 -0.378681197 RQQDPS(ph)PGSNLGGGDDLKLR ddPTM_K562_Paclitaxel_30min_R1 1 RQQDPSPGSNLGGGDDLKLR 20 2 J3KTD8;Q13951-2 J3KTD8 CBFB 1 RQQDPS(0.943)PGS(0.057)NLGGGDDLKLR 120.33 0.00014715 48298000 4149.7 3858.5 7094.9 4510.8 3405 3332 2684.5 4168.1 5960.2 5544.2 TRUE FALSE 4207.808603 4279.784079 5303.704746 4221.497478 3868.818647 3922.883416 3193.869861 3813.993889 6532.703841 4414.288997 0.953224541 0.969529653 1.201485619 0.956325578 0.876430757 0.88867843 0.723529851 0.864010918 1.479899446 1 12.10796537 -8.739424808 24.99773812 1.239950022 0.930520822 0.388519313 0.155955842 211.7555829 240451.8296 0.108233763 0.040834418 1.82E-09 8.739424808 -0.3094292 RQS(ph)FGGSLFAYSPGGAHGMLSSPK ddPTM_K562_Paclitaxel_30min_R1 1 RQSFGGSLFAYSPGGAHGMLSSPK 24 1 Q99856;K7EJ04 Q99856 ARID3A AT-rich interactive domain-containing protein 3A 1 RQS(0.984)FGGS(0.015)LFAYSPGGAHGMLSSPK 91.66 0.00010275 6354000 1213.4 1124.4 1299 891.24 689.14 826.24 1898.9 2486.9 1459.4 3999.6 TRUE FALSE 1230.391344 1247.165794 971.0513842 834.0798554 783.0125352 972.762063 2259.206362 2275.622322 1599.581891 3184.479325 0.386371277 0.391638842 0.304932545 0.261920324 0.245884007 0.305469737 0.709442936 0.714597926 0.502305629 1 11.63684179 -7.761986682 24.98384766 0.707803191 0.313319324 0.7378189 0.121016097 7.683731466 350722.5435 0.047103172 0.033942401 1.73E-08 7.761986682 -0.394483867 RQS(ph)LELQK ddPTM_K562_Paclitaxel_30min_R1 2 RQSLELQK 8 1 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 RQS(1)LELQK;RQS(1)LELQK 95.618 0.0091186 23078000 2988 2848.7 5613.7 3994.8 3064.3 3094.3 2758.2 4025.1 2516.8 4823.5 TRUE FALSE 3029.841219 3159.7307 4196.452006 3738.591408 3481.709539 3643.030659 3281.554051 3683.142631 2758.549885 3840.468052 0.78892499 0.822746253 1.092692856 0.973472857 0.90658469 0.948590278 0.854467218 0.959034831 0.718284815 1 11.90706643 -7.758870265 24.95592503 0.879532953 0.927024201 0.031454713 0.103871964 259.3623831 2519435.616 0.041788638 0.030834621 1.74E-08 7.758870265 0.047491247 RQS(ph)PEPSPVTLGR ddPTM_K562_Paclitaxel_30min_R1 2 RQSPEPSPVTLGR 13 1 Q9NRL2-2;Q9NRL2 Q9NRL2-2 BAZ1A Bromodomain adjacent to zinc finger domain protein 1A 1 RQS(0.929)PEPS(0.071)PVTLGR;RQS(0.979)PEPS(0.019)PVT(0.002)LGR 122.1 0.0026286 198732000 3660.9 3871.6 5759.7 4032.1 4009.8 3474.6 3430.6 4282.5 3727.3 4622.2 TRUE FALSE 3712.163895 4294.314381 4305.5925 3773.499153 4556.002646 4090.771524 4081.538441 3918.674894 4085.323819 3680.193103 1.008687259 1.166872026 1.169936571 1.025353575 1.237979236 1.111564369 1.109055511 1.064801434 1.110084092 1 11.84556575 -9.419681448 0.713310454 0.999604922 1.12315219 0.212643421 0.065124215 2.122348016 1.952386171 0.068159591 0.023586772 3.80E-10 9.419681448 0.123547268 RQS(ph)S(ph)GSATNVASTPDNR ddPTM_K562_Paclitaxel_30min_R1 1 RQSSGSATNVASTPDNR 17 1 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 2 RQS(0.989)S(0.62)GS(0.176)AT(0.102)NVAS(0.102)T(0.011)PDNR 132.14 2.73E-07 6341000 1422.1 1305.3 2036.7 1852.9 1505 1383.7 1711.1 2303.5 2287 2434.4 TRUE FALSE 1442.013788 1447.817068 1522.509895 1734.063287 1710.00648 1629.079767 2035.772292 2107.803297 2506.676569 1938.267944 0.743970302 0.746964357 0.78550022 0.894645806 0.882234309 0.840482232 1.050304886 1.087467449 1.293255959 1 10.92055231 -7.825319321 1.36075912 1.155330905 0.800443924 0.753576807 0.082558977 0.210050528 0.777684809 0.053376686 0.029348016 1.50E-08 7.825319321 -0.354886981 RQS(ph)SGS(ph)ATNVASTPDNR ddPTM_K562_Paclitaxel_30min_R1 2 RQSSGSATNVASTPDNR 17 1 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 2 RQS(0.995)S(0.03)GS(0.962)AT(0.013)NVASTPDNR;RQS(0.979)S(0.023)GS(0.728)AT(0.101)NVAS(0.151)T(0.017)PDNR 176.46 1.30E-09 8231300 3493.3 3531.6 4097.3 3979.5 3229.3 3434.8 4357.8 4855.3 4793.6 5875.6 TRUE FALSE 3542.216978 3917.192031 3062.88594 3724.272682 3669.185333 4043.913553 5184.669801 4442.811959 5254.046698 4678.149495 0.757183365 0.837337934 0.654721689 0.796099544 0.784324087 0.864425893 1.108273647 0.949694311 1.123103634 1 12.19172225 -7.565853426 3.438960305 1.040775086 0.767518767 0.806188413 0.064400197 0.099679094 2.452672528 0.024899754 0.019313666 2.72E-08 7.565853426 -0.273256319 RQS(ph)SGSATNVASTPDNR ddPTM_K562_Paclitaxel_30min_R1 2 RQSSGSATNVASTPDNR 17 1 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 RQS(0.847)S(0.15)GS(0.003)ATNVASTPDNR;RQS(0.988)S(0.011)GS(0.001)ATNVASTPDNR 141.5 5.52E-09 157652000 3634.2 3439.2 4786.2 3749.6 3753.5 3581.2 3927.5 4564.5 4108.9 5301.9 TRUE FALSE 3685.090012 3814.703487 3577.864615 3509.117439 4264.790247 4216.275537 4672.722622 4176.717234 4503.578204 4221.36987 0.872960704 0.90366483 0.847560087 0.831274574 1.01028585 0.998793204 1.106920921 0.98942224 1.066852312 1 12.04349553 -6.830086172 5.600898059 1.032519757 0.865731443 0.823295733 0.037454227 0.080296573 4.615551254 0.011638671 0.013390136 1.48E-07 6.830086172 -0.166788314 RQS(ph)SSYDDPWK ddPTM_K562_Paclitaxel_30min_R1 1 RQSSSYDDPWK 11 1 Q96D71-3;Q96D71;E9PMG1;H0YDT0;Q96D71-4;Q96D71-2;H0YCF0;H7C1V2 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 1 RQS(0.649)S(0.139)S(0.211)Y(0.001)DDPWK 68.972 0.024117 0 2496 2244.3 3830.2 2629.3 2322.4 2058.5 1681.8 2981.2 1914.1 3189 TRUE FALSE 2530.951701 2489.340264 2863.218639 2460.668466 2638.750199 2423.546072 2000.91277 2727.928452 2097.957857 2539.08005 0.996798703 0.980410312 1.127659854 0.969118113 1.039254434 0.954497702 0.788046352 1.074376703 0.826266922 1 11.31009016 -7.403740494 5.018555558 0.92136495 1.022569511 0.236620525 0.08558976 0.329688666 12.19955741 0.029303147 0.025567559 3.95E-08 7.403740494 0.101204562 RQSSGS(ph)ATNVASTPDNR ddPTM_K562_Paclitaxel_30min_R1 1 RQSSGSATNVASTPDNR 17 1 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 RQS(0.198)S(0.198)GS(0.58)AT(0.024)NVASTPDNR 85.884 0.0060216 1333500 685.15 473.89 793.85 513.73 483.38 540.29 598.27 578.28 621.21 605.8 TRUE FALSE 694.7442139 525.6309128 593.4327493 480.7816572 549.2245397 636.1028455 711.7886093 529.1515045 680.8799961 482.3376275 1.440369099 1.089757222 1.230326467 0.996774106 1.138672391 1.31879167 1.475706163 1.097056241 1.411625296 1 8.91389955 -7.258188472 24.61103364 1.280143783 1.166919756 0.046841571 0.168381635 580.2500325 4392796.658 0.054699328 0.052508652 5.52E-08 7.258188472 -0.113224027 RQVS(ph)ASELHTSGILGPETLR ddPTM_K562_Paclitaxel_30min_R1 3 RQVSASELHTSGILGPETLR 20 1 A0A075B730;P58107 A0A075B730 EPPK1 Epiplakin 1 RQVS(0.967)AS(0.033)ELHTSGILGPETLR;RQVS(0.88)AS(0.12)ELHTSGILGPETLR;RQVS(0.823)AS(0.177)ELHTSGILGPETLR 97.94 0.00049688 603264000 2888.32 2992.77 3494.8 3458.6 3789.9 3519.8 2415.28 3541.8 2490.2 3274.6 TRUE FALSE 2928.765391 3319.530749 2612.494517 3236.780876 4306.148544 4143.98711 2873.566771 3240.901983 2729.394837 2607.234723 1.123322486 1.273199809 1.002017384 1.241461249 1.651615218 1.589418503 1.102151159 1.243041892 1.046854283 1 11.34830476 -8.667521549 1.614665716 0.999654008 1.298353519 0.225387028 0.191854288 0.631019331 3.072851266 0.197783363 0.061113076 2.15E-09 8.667521549 0.298699511 RRAPAPAGQQQMRAES(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 RRAPAPAGQQQMRAESR 17 3 Q6U949 Q6U949 IGF2-AS Putative insulin-like growth factor 2 antisense gene protein 1 RRAPAPAGQQQMRAES(1)R 51.76 0.030192 0 917.98 880.49 1179.8 993.89 942.37 758.14 653.36 850.18 841.39 1064 TRUE FALSE 930.8345522 976.6248758 881.9448984 930.1463439 1070.736748 892.5854842 777.3316492 777.9519023 922.2092689 847.156216 1.098775568 1.152827374 1.041065251 1.097963193 1.263918895 1.053625609 0.917577697 0.918309856 1.088594112 1 9.726484217 -7.523580963 21.65095378 0.975925385 1.128652552 0.507353457 0.069559502 3.687152635 113619.6034 0.026699366 0.020946826 3.00E-08 7.523580963 0.152727167 RRDS(ph)DGVDGFEAEGK ddPTM_K562_Paclitaxel_30min_R1 1 RRDSDGVDGFEAEGK 15 2 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 1 RRDS(1)DGVDGFEAEGK 105.2 0.017878 146220000 1924 1700.3 3646.4 2011.9 1626.6 1288.3 1620 2214.8 1326.7 2293.9 TRUE FALSE 1950.941936 1885.944504 2725.821222 1882.865739 1848.170459 1516.761916 1927.386543 2026.638916 1454.135463 1826.401921 1.068188723 1.03260103 1.492454202 1.03091533 1.01191881 0.830464477 1.055291566 1.109634683 0.796174953 1 10.83478857 -6.50405699 24.76472586 0.974939889 1.194641877 0.3351261 0.145039441 806.721141 1061443.588 0.041257279 0.060020785 3.13E-07 6.50405699 0.219701989 RRDSGDNS(ph)APSGQEREDHGLETGDPPLPPPPVLPGPGEELPGAR ddPTM_K562_Paclitaxel_30min_R1 1 RRDSGDNSAPSGQEREDHGLETGDPPLPPPPVLPGPGEELPGAR 44 3 Q8IXQ3 Q8IXQ3 C9orf40 Uncharacterized protein C9orf40 1 RRDS(0.194)GDNS(0.371)APS(0.301)GQEREDHGLET(0.133)GDPPLPPPPVLPGPGEELPGAR 41.197 0.0017493 128740000 296.98 275.93 389.26 251.3 168.94 239.55 205.67 242.21 232.06 348.64 TRUE FALSE 301.1386363 306.0569705 290.9864987 235.1827428 191.9524882 282.0308291 244.6948088 221.6327487 254.3503999 277.5869766 1.084844253 1.102562427 1.048271436 0.84723983 0.691503941 1.016008865 0.881506805 0.798426322 0.916290825 1 8.116796073 -6.182712773 4.443694716 0.868375618 1.088260574 0.515643476 0.088818455 0.17147961 6.268410065 0.02451069 0.043696686 6.57E-07 6.182712773 0.219884956 RREEEGLQLR ddPTM_K562_Paclitaxel_30min_R1 2 RREEEGLQLR 10 2 C9J352;C9JWD9;F2Z3G4;C9J4U1;C9JYI4;P52294 C9J352 KPNA1 "Importin subunit alpha-5;Importin subunit alpha-5, N-terminally processed" 0 ; 136.57 0.00060386 14822900 4337.2 3433.4 4498.7 4253.9 4164.1 3979.3 3443.8 4021.8 4140.4 5774.1 FALSE TRUE 4397.934181 3808.270223 3362.947546 3981.073894 4731.320919 4684.972983 4097.243072 3680.122987 4538.10392 4597.335251 0.956626816 0.828364697 0.731499306 0.865952487 1.029144202 1.019062724 0.891221294 0.800490455 0.98711616 1 12.16658216 -6.53770975 24.07139063 0.94486257 0.831274076 0.297347979 0.08175086 204.8689532 332509.0194 0.025780628 0.033298212 2.90E-07 6.53770975 -0.113588493 RREEEMMIR ddPTM_K562_Paclitaxel_30min_R1 4 RREEEMMIR 9 2 P23246;P23246-2;H0Y9K7 P23246 SFPQ "Splicing factor, proline- and glutamine-rich" 0 ;;; 119.75 0.0016927 95421100 6949.1 6711.8 7873 7793.7 6635.1 6617 6412.5 7800.9 7598.1 8634.6 FALSE TRUE 7046.40884 7444.617022 5885.363778 7293.846965 7538.912953 7790.432043 7629.2384 7138.164853 8327.931454 6874.86378 1.024952503 1.082874841 0.856069875 1.060944216 1.096590884 1.133176204 1.109729391 1.038299097 1.211359486 1 12.74711541 -6.512353496 23.76424086 1.100282073 0.99096505 0.305116884 0.074310659 313.0621476 706842.0005 0.020767272 0.028688769 3.07E-07 6.512353496 -0.109317023 RREEGPPPPS(ph)PDGAS(ph)SDAEPEPPSGR ddPTM_K562_Paclitaxel_30min_R1 2 RREEGPPPPSPDGASSDAEPEPPSGR 26 2 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3;F8WCB7;E9PD53 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 2 RREEGPPPPS(1)PDGAS(0.544)S(0.447)DAEPEPPS(0.008)GR;RREEGPPPPS(1)PDGAS(0.652)S(0.348)DAEPEPPSGR 113.66 1.62E-07 245160000 6659.9 6288.6 7000.1 6751.2 6150.1 6094.3 6033.4 7466.2 6079.5 7250.8 TRUE FALSE 6753.159148 6975.210615 5232.838179 6318.208249 6987.847742 7175.038537 7178.206154 6831.899707 6663.463139 5773.08298 1.169766513 1.208229752 0.906420053 1.094425331 1.210418725 1.242843479 1.243392166 1.18340577 1.154229579 1 12.49512625 RREEGPPPPS(ph)PDGASS(ph)DAEPEPPSGR ddPTM_K562_Paclitaxel_30min_R1 1 RREEGPPPPSPDGASSDAEPEPPSGR 26 2 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3;F8WCB7;E9PD53 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 2 RREEGPPPPS(1)PDGAS(0.337)S(0.649)DAEPEPPS(0.014)GR 58.943 0.013079 11621000 2140.9 2327.7 2369.2 2458.2 2105.3 2245.3 1906 2430.3 2439.6 2893.4 TRUE FALSE 2170.879205 2581.846158 1771.066158 2300.542054 2392.077503 2643.472429 2267.65355 2223.830846 2673.93448 2303.723492 0.942334969 1.120727451 0.768784172 0.998619002 1.038352698 1.147478176 0.984342764 0.96532021 1.160701139 1 11.16975185 -6.521912966 19.32881642 1.04648669 0.948639415 0.18568459 0.098956155 3.523916096 70523.36712 0.02881029 0.037981995 3.01E-07 6.521912966 -0.097847275 RREEGPPPPS(ph)PDGASSDAEPEPPSGR ddPTM_K562_Paclitaxel_30min_R1 4 RREEGPPPPSPDGASSDAEPEPPSGR 26 2 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3;F8WCB7;E9PD53 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 1 RREEGPPPPS(0.999)PDGASSDAEPEPPSGR;RREEGPPPPS(0.98)PDGAS(0.011)S(0.008)DAEPEPPSGR;RREEGPPPPS(0.532)PDGAS(0.375)S(0.094)DAEPEPPSGR;RREEGPPPPS(0.796)PDGAS(0.101)S(0.101)DAEPEPPS(0.001)GR 99.13 5.83E-05 439486000 2785.91 2408.01 3193.63 2678.12 2195.69 2844.13 2358.81 2828.71 2370.99 3032.47 TRUE FALSE 2824.921335 2670.924675 2387.358608 2506.35737 2494.780151 3348.496522 2806.381884 2588.393429 2598.734183 2414.450949 1.170005684 1.106224451 0.988779088 1.038065143 1.033270173 1.386856305 1.162327147 1.07204225 1.07632511 1 11.23747944 -5.267427997 6.808809857 1.102198167 1.171002386 0.037333507 0.108814053 0.495840094 161.9887773 0.029048682 0.15818194 5.40E-06 5.267427997 0.068804219 RREEGPPPPSPDGAS(ph)SDAEPEPPSGR ddPTM_K562_Paclitaxel_30min_R1 2 RREEGPPPPSPDGASSDAEPEPPSGR 26 2 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3;F8WCB7;E9PD53 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 1 RREEGPPPPS(0.039)PDGAS(0.699)S(0.258)DAEPEPPS(0.004)GR;RREEGPPPPS(0.004)PDGAS(0.498)S(0.498)DAEPEPPSGR 91.592 0.00032658 30192000 1406.75 1477.91 2060.02 1668.11 1466.59 1383.12 1544.88 1458.51 1565.04 2170.7 TRUE FALSE 1426.44884 1639.273212 1539.942473 1561.124891 1666.364388 1628.396912 1838.012915 1334.600472 1715.369085 1728.310148 0.825343091 0.948483241 0.89101049 0.903266634 0.964158192 0.942190216 1.063474005 0.772199638 0.992512302 1 10.75514642 -3.967093254 0.878912458 0.942496178 1.04E-25 0.175832906 0.073958477 36.14252863 3.631408119 0.024255911 54.70083771 0.000107872 3.967093254 -0.942496178 RREEGPPPPSPDGASS(ph)DAEPEPPSGR ddPTM_K562_Paclitaxel_30min_R1 1 RREEGPPPPSPDGASSDAEPEPPSGR 26 2 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3;F8WCB7;E9PD53 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4;Structural maintenance of chromosomes protein 1 RREEGPPPPS(0.001)PDGAS(0.463)S(0.535)DAEPEPPSGR 119.97 5.08E-08 281040000 759.22 803 1037.8 1036.3 599.05 770.1 599.94 908.56 897.61 1144.5 TRUE FALSE 769.8514224 890.6742556 775.7945547 969.8363563 680.650752 906.6664223 713.7754831 831.3721569 983.8294511 911.2502718 0.844829841 0.977420016 0.851351795 1.06429198 0.746941618 0.994969714 0.783292478 0.912342287 1.07964791 1 9.831703529 -8.706456789 7.301898384 1.039261242 0.897674554 0.271844891 0.093625039 0.244782464 26.72064618 0.060228002 0.022059289 1.97E-09 8.706456789 -0.141586688 RREPES(ph)PPASAPIPLFGADTIGQR ddPTM_K562_Paclitaxel_30min_R1 2 RREPESPPASAPIPLFGADTIGQR 24 2 Q96AY4 Q96AY4 TTC28 Tetratricopeptide repeat protein 28 1 RREPES(0.792)PPAS(0.208)APIPLFGADTIGQR;RREPES(1)PPASAPIPLFGADTIGQR 72.028 0.00052748 46807000 5538.36 5257.95 7054.94 5791.69 4900.56 5450.49 4953.82 5535.57 4975.62 5577.05 TRUE FALSE 5615.914127 5832.030762 5273.833143 5420.236926 5568.099239 6417.057873 5893.781484 5065.288777 5453.550533 4440.444149 1.26471901 1.313389059 1.187681449 1.220651976 1.253950968 1.445138742 1.327295488 1.140716696 1.22815429 1 12.11648827 -9.182023786 1.148476252 1.003712692 1.280948321 0.538832551 0.076400116 0.614751907 1.643883605 0.078553473 0.02464241 6.58E-10 9.182023786 0.277235629 RRFS(ph)DSEGEETVPEPR ddPTM_K562_Paclitaxel_30min_R1 2 RRFSDSEGEETVPEPR 16 2 A0A1B0GWH8;H3BQ48;A0A1B0GWD3;A0A1B0GV71;A0A1B0GW34;A0A0D9SFH9;H3BPL0;Q9UBD8;A0A1B0GV41;H3BR84;O95090;H3BR00;Q9UP10;Q9UBH5;A0A0D9SF04;Q13286-5;Q13286-4;Q13286-6;Q13286-2;Q13286-7;Q13286-3;Q13286 A0A1B0GWH8 CLN3 Battenin 1 RRFS(0.984)DS(0.016)EGEETVPEPR;RRFS(0.979)DS(0.021)EGEETVPEPR 105.5 0.0099326 195037000 2138.94 2414.09 3040.01 2579.03 1977.25 1694.4 1835.27 2507 2394.36 3050.8 TRUE FALSE 2168.891759 2677.66851 2272.521877 2413.622559 2246.584925 1994.878049 2183.502902 2294.014702 2624.348976 2429.045285 0.892898857 1.102354298 0.935561758 0.993650705 0.92488392 0.821260131 0.898914036 0.944410018 1.080403479 1 11.24617367 -8.743552141 23.03907026 1.040201632 0.940614139 0.243017263 0.071241505 127.5271001 164260.6429 0.051180879 0.019221153 1.80E-09 8.743552141 -0.099587493 RRGDS(ph)ES(ph)EEDEQDSEEVR ddPTM_K562_Paclitaxel_30min_R1 3 RRGDSESEEDEQDSEEVR 18 2 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 2 RRGDS(1)ES(1)EEDEQDS(0.001)EEVR;RRGDS(1)ES(0.999)EEDEQDS(0.001)EEVR;RRGDS(1)ES(1)EEDEQDSEEVR 108.28 0.0015817 425563000 8387.55 9325.5 12463.5 10636 8280.5 8725.2 8258.1 10506.2 9209.8 11782.6 TRUE FALSE 8505.001578 10343.68963 9316.935278 9953.854565 9408.44429 10272.49171 9825.031365 9613.632732 10094.44244 9381.299652 0.906590973 1.102585997 0.993139077 1.061031513 1.002893484 1.094996652 1.047299599 1.024765554 1.076017483 1 13.19557209 -5.245819052 24.79461784 1.04475981 0.906590858 0.552096527 0.037331718 1891.903759 3003025.601 0.008520032 0.203284259 5.68E-06 5.245819052 -0.138168952 RRGDSES(ph)EEDEQDSEEVR ddPTM_K562_Paclitaxel_30min_R1 1 RRGDSESEEDEQDSEEVR 18 2 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 1 RRGDS(0.016)ES(0.984)EEDEQDSEEVR 126.09 2.48E-05 9918000 656.02 654.85 731.74 730.74 475.32 647.67 400.67 581.07 361.99 666.19 TRUE FALSE 665.206304 726.3487376 547.003187 683.8736071 540.0666312 762.5251808 476.6950409 531.7044766 396.7607569 530.4201123 1.254112143 1.369383854 1.031264038 1.289305573 1.018186563 1.437587231 0.898712228 1.002421409 0.748012279 1 9.05099167 -7.788155462 24.99951145 0.912488025 1.22307538 0.559118968 0.13947427 167.743706 156964.1262 0.055347995 0.0373274 1.63E-08 7.788155462 0.310587355 RRGEEGHDPKEPEQLR ddPTM_K562_Paclitaxel_30min_R1 2 RRGEEGHDPKEPEQLR 16 3 P51991 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 ; 72.815 0.012256 6932400 2933.2 2227.93 5156.6 3665.2 2539.59 2269.49 2005.85 3309.3 3128.52 3645.2 FALSE TRUE 2974.27385 2471.182932 3854.752554 3430.130477 2885.525154 2671.952186 2386.449566 3028.154309 3429.028325 2902.306239 1.024796698 0.851454922 1.328168786 1.18186373 0.994218017 0.920630687 0.822259737 1.043361403 1.181483979 1 11.50298404 -6.89657426 9.283019788 0.982475927 1.095420658 0.110653128 0.141163208 0.673976653 55.26435431 0.047339947 0.053725447 1.27E-07 6.89657426 0.112944731 RRGS(ph)S(ph)GSVDETLFALPAASEPVIR ddPTM_K562_Paclitaxel_30min_R1 1 RRGSSGSVDETLFALPAASEPVIR 24 2 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 2 RRGS(0.667)S(0.667)GS(0.667)VDETLFALPAASEPVIR 76.889 0.00073493 950070000 853.53 576.24 1128.9 1205.8 833.27 593.06 833.4 1110.9 829.23 1149.8 TRUE FALSE 865.4820534 639.1558319 843.8952329 1128.465385 946.7754814 698.230864 991.5332994 1016.522111 908.8812466 915.4701289 0.945396279 0.698172242 0.921816241 1.232662158 1.03419593 0.762701963 1.083086458 1.11038261 0.992802734 1 9.838369002 -6.00093253 24.99886896 1.030474653 0.818836704 0.316080399 0.124368102 40.54364865 1087007.042 0.033427945 0.068215017 9.98E-07 6.00093253 -0.211637949 RRGS(ph)SGSVDETLFALPAASEPVIR ddPTM_K562_Paclitaxel_30min_R1 1 RRGSSGSVDETLFALPAASEPVIR 24 2 Q9NQC3-5;Q9NQC3 Q9NQC3-5 RTN4 Reticulon-4 1 RRGS(0.45)S(0.45)GS(0.099)VDETLFALPAASEPVIR 119.41 2.13E-07 21569000 1127.6 920.67 1373.8 1010.4 1297.1 1122.8 1103.4 1491 1131 1460.3 TRUE FALSE 1143.389879 1021.191864 1026.967199 945.5974664 1473.78698 1321.912815 1312.76439 1364.330243 1239.637603 1162.690058 0.983400409 0.87830102 0.883268238 0.813284211 1.26756651 1.136943423 1.129075096 1.173425569 1.066180617 1 10.18325085 -6.753717146 24.99998266 1.137950892 0.888309329 0.705662759 0.075575556 90.33473985 292448.5285 0.021770141 0.02756744 1.76E-07 6.753717146 -0.249641563 RRIPVS(ph)QPGMADPHQLFDDT(ph)SSAQSRGY(ph)GAQR ddPTM_K562_Paclitaxel_30min_R1 1 RRIPVSQPGMADPHQLFDDTSSAQSRGYGAQR 32 3 Q5BJH7-4;Q5BJH7-5;Q5BJH7-3;Q5BJH7;K7ERQ0;K7ERY2;Q5BJH7-6 Q5BJH7-4 YIF1B Protein YIF1B 3 RRIPVS(0.999)QPGMADPHQLFDDT(0.458)S(0.458)S(0.188)AQS(0.151)RGY(0.746)GAQR 44.811 0.011433 21882000 989.7 906.25 1150.6 1060.2 878.54 994.58 1023.4 1082.8 874.29 1096 TRUE FALSE 1003.558853 1005.19744 860.1167996 992.2035173 998.2120218 1170.954798 1217.584807 990.8093814 958.2694609 872.6345984 1.150033308 1.151911054 0.985655166 1.137020603 1.143906079 1.341861531 1.395297424 1.135422986 1.098133701 1 9.769233865 -7.014273314 20.31019563 1.218257524 1.105771771 0.096405211 0.116207195 106.5808047 151661.3013 0.039066806 0.040711172 9.68E-08 7.014273314 -0.112485753 RRKEDEVEEWQHR ddPTM_K562_Paclitaxel_30min_R1 2 RRKEDEVEEWQHR 13 3 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 ; 64.945 0.022066 42565000 2547.7 2173.02 4085.4 2870.6 2307.7 1892.01 2209.1 2664 2794.1 2818.2 FALSE TRUE 2583.37566 2410.277672 3053.990242 2686.492564 2622.04781 2227.531408 2628.265193 2437.676572 3062.485789 2243.849293 1.151314247 1.074170926 1.361049627 1.197269608 1.168548983 0.992727727 1.171319839 1.086381594 1.364835775 1 11.13176007 -7.007386809 23.83693659 1.125820731 1.197028307 0.079309119 0.117637227 550.8362759 1777540.158 0.037146425 0.040369039 9.83E-08 7.007386809 0.071207575 RRLS(ph)STSLAS(ph)GHS(ph)VR ddPTM_K562_Paclitaxel_30min_R1 1 RRLSSTSLASGHSVR 15 2 M0QZ82;Q9BZL6-2;Q9BZL6;Q9BZL6-3 M0QZ82 PRKD2 Serine/threonine-protein kinase D2 3 RRLS(0.517)S(0.113)T(0.135)S(0.236)LAS(0.999)GHS(1)VR 75.574 0.020482 0 1246.1 1547.7 1679.1 1403.8 973.46 1147 983.69 1516.5 1420 1591.9 TRUE FALSE 1263.549245 1716.68312 1255.190438 1313.766551 1106.061733 1350.404345 1170.340042 1387.663859 1556.397345 1267.469906 0.996906702 1.354417262 0.990311827 1.03652682 0.87265325 1.065433064 0.923367124 1.094829828 1.227956054 1 10.30773578 -5.827262195 24.99999997 1.02235841 1.175684605 0.194386948 0.121335829 75.52620321 28684.51291 0.031011067 0.064554741 1.49E-06 5.827262195 0.153326195 RRPDLDEIHR ddPTM_K562_Paclitaxel_30min_R1 1 RRPDLDEIHR 10 2 O00488;A9J4F5 O00488 ZNF593 Zinc finger protein 593 0 89.827 0.010099 7766700 2515.2 1982 2385.2 2421.8 1785.5 2180.1 1927.8 1957.9 2217.2 2092.6 FALSE TRUE 2550.42056 2198.401463 1783.02676 2266.476588 2028.715329 2566.710125 2293.589986 1791.564174 2430.171967 1666.126971 1.530748019 1.319468144 1.070162593 1.36032645 1.217623485 1.540524923 1.376599758 1.075286701 1.458575492 1 10.70228263 -11.40595655 3.182489183 0.99593203 1.317880552 0.276841738 0.158176391 39166086.1 53393401.76 1471773.336 0.038684032 3.93E-12 11.40595655 0.321948522 RRPESAPAESS(ph)PSK ddPTM_K562_Paclitaxel_30min_R1 1 RRPESAPAESSPSK 14 2 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 RRPES(0.014)APAES(0.341)S(0.643)PS(0.002)K 118.66 0.009177 3864100 1183.2 938.49 1822.6 1392.5 808.76 811.13 793.13 1077.7 724.3 1975.2 TRUE FALSE 1199.76845 1040.957512 1362.462088 1303.191283 918.9268044 954.9725167 943.6222771 986.1426582 793.8722513 1572.653156 0.762894505 0.661911692 0.866346202 0.828657786 0.584316256 0.607236575 0.60001932 0.627056675 0.504798053 1 10.61898481 -6.762630264 24.99904561 0.630229654 0.777692039 0.161730166 0.134202758 47.96980829 1006991.975 0.038571852 0.046237693 1.73E-07 6.762630264 0.147462385 RRPGAQPLPPPPPSQS(ph)PEPTEPHPR ddPTM_K562_Paclitaxel_30min_R1 5 RRPGAQPLPPPPPSQSPEPTEPHPR 25 2 K7EPZ6;A0A0A0MS90;Q9UIS9-4;Q9UIS9-11;Q9UIS9-7;Q9UIS9-10;Q9UIS9-6;Q9UIS9-5;Q9UIS9;Q9UIS9-9;Q9UIS9-12 K7EPZ6;Q9UIS9-6 MBD1 Methyl-CpG-binding domain protein 1 1 RRPGAQPLPPPPPS(0.2)QS(0.772)PEPT(0.028)EPHPR;RRPGAQPLPPPPPS(0.001)QS(0.998)PEPT(0.002)EPHPR;RRPGAQPLPPPPPS(0.009)QS(0.925)PEPT(0.066)EPHPR;RRPGAQPLPPPPPS(0.001)QS(0.999)PEPTEPHPR;RRPGAQPLPPPPPS(0.002)QS(0.998)PEPTEPHPR 121.62 2.22E-09 122512000 6904.11 7443.65 9639.5 7725.1 7234.32 6900.12 6565.19 7920.5 7421.1 8892.4 TRUE FALSE 7000.788841 8256.37288 7205.889005 7229.646662 8219.756862 8123.7594 7810.90053 7247.604087 8133.929813 7080.123999 0.988794665 1.166133938 1.017763108 1.02111865 1.160962275 1.147403548 1.103215216 1.023654965 1.148840022 1 12.78955891 -5.222466383 22.92810562 1.088793524 0.988793872 0.179435098 0.063396453 13390.31764 7877169.761 0.015625774 3.760727814 5.99E-06 5.222466383 -0.099999652 RRPGAS(ph)PTGETPTIEEGEEDEDEASEAEGAR ddPTM_K562_Paclitaxel_30min_R1 1 RRPGASPTGETPTIEEGEEDEDEASEAEGAR 31 2 P04920-2;P04920-3;P04920;C9J9M9;C9J722;C9J035 P04920-2 SLC4A2 Anion exchange protein 2 1 RRPGAS(0.484)PT(0.484)GET(0.018)PT(0.014)IEEGEEDEDEASEAEGAR 96.44 1.08E-10 34652000 292.36 209.57 194.52 364.29 222.89 242.38 281.2 277.88 265.85 261.33 TRUE FALSE 296.453942 232.4515613 145.4110202 340.9260699 253.2513916 285.3626898 334.556232 254.2723595 291.3860803 208.0708026 1.424774348 1.1171753 0.698853556 1.6385099 1.217140456 1.371469165 1.6078961 1.222047286 1.400417919 1 7.700930723 -6.276167665 24.97232822 1.366291458 1.083958437 0.209026555 0.2400945 1136.924276 1927692.396 0.065978295 0.098326899 5.29E-07 6.276167665 -0.282333021 RRPGASPTGET(ph)PTIEEGEEDEDEASEAEGAR ddPTM_K562_Paclitaxel_30min_R1 1 RRPGASPTGETPTIEEGEEDEDEASEAEGAR 31 2 P04920-2;P04920-3;P04920;C9J9M9;C9J722;C9J035 P04920-2 SLC4A2 Anion exchange protein 2 1 RRPGAS(0.271)PT(0.271)GET(0.395)PT(0.062)IEEGEEDEDEASEAEGAR 96.466 2.07E-09 28908000 487.86 510.98 717.26 536.16 573.93 668.56 407.08 545.56 675.5 693.96 TRUE FALSE 494.6915452 566.7705244 536.178842 501.7730974 652.1089827 787.119729 484.3213049 499.2112727 740.3847932 552.5305711 0.895319772 1.025772245 0.970405748 0.908136352 1.180222447 1.424572268 0.876551145 0.903499822 1.33998883 1 9.10991048 -6.758730593 24.98600524 1.118956342 0.956791444 0.201792472 0.166262508 132.6020334 1223117.946 0.052113336 0.064239416 1.74E-07 6.758730593 -0.162164898 RRPS(ph)LLSEFHPGSDRPQER ddPTM_K562_Paclitaxel_30min_R1 1 RRPSLLSEFHPGSDRPQER 19 3 O75376-2;O75376;C9JAP0;E7EVU5;E7EW50;J3KS51 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 RRPS(0.898)LLS(0.101)EFHPGS(0.001)DRPQER 40.179 0.030225 26224000 1339.6 1516.3 1709.3 1544.9 1740 1838 1173.1 1640.9 1373.9 1431.9 TRUE FALSE 1358.358533 1681.854762 1277.766075 1445.817029 1977.017458 2163.943493 1395.689601 1501.495303 1505.869234 1140.077994 1.191461058 1.475210267 1.120770755 1.268173788 1.7341072 1.898066189 1.224205369 1.317011038 1.320847557 1 10.15491681 -9.207446003 1.164396168 1.004223536 1.424225361 0.218749448 0.231837606 1.334076346 3.564102793 0.241516774 0.075301399 6.20E-10 9.207446003 0.420001824 RRPS(ph)PYEMEITDGPHTK ddPTM_K562_Paclitaxel_30min_R1 3 RRPSPYEMEITDGPHTK 17 2 P17542-2;P17542 P17542-2 TAL1 T-cell acute lymphocytic leukemia protein 1 1 RRPS(0.954)PY(0.046)EMEITDGPHTK;RRPS(0.548)PY(0.451)EMEIT(0.001)DGPHTK;RRPS(0.852)PY(0.148)EMEITDGPHTK 69.331 0.016021 84232000 3353.29 3026.51 5323.1 4180.63 2771.97 3043.63 3030.51 4017.98 3300.12 4641.95 TRUE FALSE 3400.246406 3356.954597 3979.21757 3912.503104 3149.559244 3583.375046 3605.533452 3676.62752 3617.111271 3695.918042 0.920000489 0.908287077 1.076652005 1.058601154 0.852172372 0.96954938 0.975544753 0.994780587 0.978677349 1 11.85171705 -8.036533372 3.490358468 0.989859914 0.96622382 0.034783652 0.062845988 1.314863074 32.85527383 0.033729996 0.019368397 9.19E-09 8.036533372 -0.023636093 RRPYNDDADIDYINER ddPTM_K562_Paclitaxel_30min_R1 1 RRPYNDDADIDYINER 16 2 O95926-2;O95926 O95926-2 SYF2 Pre-mRNA-splicing factor SYF2 0 79.652 0.013633 22205000 969.14 927.87 1132.8 1026.3 841.13 939.02 1027.7 1311.9 1010.3 1377.6 FALSE TRUE 982.7109501 1029.177984 846.8106297 960.4777115 955.7061464 1105.542013 1222.70071 1200.445906 1107.343829 1096.844364 0.895943839 0.93830813 0.77204265 0.875673654 0.871323387 1.007929702 1.114744033 1.094454187 1.009572429 1 10.09914311 -7.356855194 3.363962851 1.062593348 0.868158988 0.749866755 0.050810795 0.123308585 2.651083925 0.019365393 0.016961677 4.40E-08 7.356855194 -0.194434359 RRQPPVS(ph)PLTLSPGPEAHQGFSR ddPTM_K562_Paclitaxel_30min_R1 1 RRQPPVSPLTLSPGPEAHQGFSR 23 2 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 RRQPPVS(0.887)PLT(0.101)LS(0.012)PGPEAHQGFSR 66.137 0.0028086 7959900 454.44 380.71 823.32 420.72 429.94 427.12 526.21 705.48 525.9 740.69 TRUE FALSE 460.8035621 422.2772053 615.4626833 393.7369023 488.5051069 502.8637349 626.0556005 645.5450705 576.4150448 589.7369714 0.781371331 0.716043297 1.043622349 0.667648327 0.828344043 0.852691555 1.061584453 1.094632187 0.977410393 1 9.203927831 -7.687081986 4.378566151 1.041774378 0.810800056 0.550060213 0.097165081 0.160666079 5.844898703 0.038416231 0.0286792 2.06E-08 7.687081986 -0.230974322 RRQRSSGCCCCGGGSQR ddPTM_K562_Paclitaxel_30min_R1 1 RRQRSSGCCCCGGGSQR 17 3 Q9UGL9 Q9UGL9 CRCT1 Cysteine-rich C-terminal protein 1 0 43.897 0.031148 177480000 0 0 0 0 0 0 0 0 0 0 FALSE TRUE 0 0 0 0 0 0 0 0 0 0 0 RRRGDS(ph)ES(ph)EEDEQDSEEVR ddPTM_K562_Paclitaxel_30min_R1 1 RRRGDSESEEDEQDSEEVR 19 3 Q9NZ63 Q9NZ63 C9orf78 Uncharacterized protein C9orf78 2 RRRGDS(0.999)ES(0.998)EEDEQDS(0.002)EEVR 71.54 0.02891 2813000 552.22 435.71 912.51 693.94 349.62 443.94 464.75 821.86 719.7 793.18 TRUE FALSE 559.9527837 483.2822913 682.1355647 649.4337944 397.2441631 522.6665258 552.9338863 752.0378631 788.8304007 631.5294806 0.886661353 0.765256898 1.080132576 1.028350717 0.629019191 0.827620154 0.875547228 1.190819884 1.249079299 1 9.302706272 -8.257448501 23.56399032 1.16496222 0.869543974 0.475976976 0.132415482 130.3656176 769750.2105 0.068069927 0.037356276 5.53E-09 8.257448501 -0.295418246 RRRGETES(ph)EEFEK ddPTM_K562_Paclitaxel_30min_R1 1 RRRGETESEEFEK 13 3 C9J813;E9PGZ1;E7EX44;Q05682-5;Q05682-4;Q05682-3;Q05682-6;Q05682-2;Q05682 C9J813 CALD1 Caldesmon 1 RRRGET(0.004)ES(0.996)EEFEK 62.463 0.025389 0 0 0 0 0 0 69.437 0 0 0 0 TRUE FALSE 0 0 0 0 0 81.75067701 0 0 0 0 0 RRS(ph)IQDLTVTGTEPGQVSSR ddPTM_K562_Paclitaxel_30min_R1 3 RRSIQDLTVTGTEPGQVSSR 20 2 Q9UG54;O43318-4;O43318-3;O43318-2;O43318 Q9UG54 DKFZp586F0420;MAP3K7 Mitogen-activated protein kinase kinase kinase 7 1 RRS(1)IQDLTVTGTEPGQVSSR;RRS(1)IQDLTVTGTEPGQVSSR;RRS(0.978)IQDLT(0.022)VTGTEPGQVSSR 128.74 2.21E-06 588918000 3000.45 3668.21 4028.24 3815.95 3188.04 3562.44 3650.92 4910.06 3728.63 5561.9 TRUE FALSE 3042.465557 4068.717573 3011.260991 3571.212047 3622.305022 4194.188715 4343.663011 4492.919755 4086.781571 4428.381727 0.687037781 0.918782035 0.679991287 0.806437265 0.817974882 0.947115442 0.980869148 1.014573727 0.922861177 1 12.11256387 -7.233378343 2.141495391 0.981591177 0.776848033 0.684375536 0.065749736 0.184381329 1.660880564 0.024376022 0.022864288 5.84E-08 7.233378343 -0.204743144 RRS(ph)PAPSLT(ph)TPTR ddPTM_K562_Paclitaxel_30min_R1 1 RRSPAPSLTTPTR 13 2 G3XAG9 G3XAG9 RBCK1 2 RRS(0.5)PAPS(0.5)LT(0.333)T(0.333)PT(0.333)R 80.014 0.024732 29999000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 RRS(ph)PPADAIPK ddPTM_K562_Paclitaxel_30min_R1 1 RRSPPADAIPK 11 2 M0R1Q8;C9JRH2;C9J3R0;C9JMJ4;C9JQZ4;C9JW69;P18754;P18754-2 M0R1Q8 RCC1 Regulator of chromosome condensation 1 RRS(1)PPADAIPK 111.66 0.030984 735810000 6226.4 5341.1 10187 7167.6 5357.4 5286.9 4559.3 7297.6 6444.6 8039.1 TRUE FALSE 6313.58881 5924.25936 7615.165859 6707.902217 6087.168582 6224.457483 5424.403374 6677.62333 7063.632625 6400.727007 0.986386203 0.925560386 1.189734518 1.047990675 0.951012061 0.972461015 0.847466759 1.043260136 1.103567238 1 12.64402006 RRS(ph)PPPGPDGHAK ddPTM_K562_Paclitaxel_30min_R1 1 RRSPPPGPDGHAK 13 2 P57081-3;P57081-2;P57081 P57081-3 WDR4 tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 1 RRS(1)PPPGPDGHAK 71.888 0.02365 51385000 1771.7 1740.2 2790.3 2447.3 1585.7 1337.9 1467.2 2473.1 1595.8 2428.4 TRUE FALSE 1796.509266 1930.200921 2085.854255 2290.341132 1801.699186 1575.15778 1745.593541 2262.994718 1749.08372 1933.490747 0.929153278 0.998298504 1.078802295 1.184562758 0.931837501 0.814670452 0.902819702 1.170419213 0.904624821 1 10.91699214 -5.265097617 6.869370696 1.001369049 0.92807952 0.032410863 0.112650618 0.485766684 168.3067958 0.029997399 0.168232804 5.43E-06 5.265097617 -0.07328953 RRS(ph)PPPGPDGHAKK ddPTM_K562_Paclitaxel_30min_R1 2 RRSPPPGPDGHAKK 14 3 P57081-3;P57081-2;P57081 P57081-3 WDR4 tRNA (guanine-N(7)-)-methyltransferase non-catalytic subunit WDR4 1 RRS(1)PPPGPDGHAKK;RRS(1)PPPGPDGHAKK 87.831 0.0058509 37318000 12399.4 8986.8 25508 14714.5 10923.2 9417.8 8586.7 13437.9 15019.1 17972.7 TRUE FALSE 12573.02986 9968.009215 19068.18992 13770.77783 12411.12477 11087.9146 10215.9815 12296.26652 16461.75166 14309.85387 0.878627411 0.696583578 1.332521638 0.962328333 0.867313173 0.774844712 0.713912356 0.859286658 1.150378739 1 13.80472132 RRS(ph)QS(ph)IEQESQEK ddPTM_K562_Paclitaxel_30min_R1 2 RRSQSIEQESQEK 13 2 Q5VTL8;A0A0A0MRN0 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 2 RRS(1)QS(1)IEQESQEK;RRS(1)QS(1)IEQESQEK 118.21 0.0050166 328660000 13956.4 11122.2 24848 15340.5 11994.7 10385.7 9986.9 15051.4 10630.4 19570.3 TRUE FALSE 14151.83266 12336.55941 18574.81508 14356.62899 13628.58121 12227.45807 11881.86214 13772.68962 11651.49742 15581.86212 0.908224739 0.791725618 1.192079287 0.921367991 0.874643936 0.784723801 0.762544428 0.883892408 0.74776027 1 13.92758003 -6.829394169 3.216326574 0.825088139 0.960626916 0.187231 0.114764617 0.382964819 7.994070413 0.036959705 0.044084104 1.48E-07 6.829394169 0.135538777 RRS(ph)SDPLGDTASNLGSAVDELMR ddPTM_K562_Paclitaxel_30min_R1 3 RRSSDPLGDTASNLGSAVDELMR 23 2 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 RRS(0.499)S(0.499)DPLGDT(0.001)ASNLGSAVDELMR;RRS(0.5)S(0.5)DPLGDTASNLGSAVDELMR;RRS(0.5)S(0.5)DPLGDTASNLGSAVDELMR 85.884 0.0028777 35694800 1502.74 1304.65 1686.18 1293.07 1178.64 1471.96 1379.24 1513.47 1663.93 1878.26 TRUE FALSE 1523.782996 1447.096099 1260.483005 1210.138278 1339.190723 1732.991439 1640.94359 1384.891277 1823.757911 1495.469581 1.018932793 0.967653316 0.842867699 0.809202871 0.895498471 1.158827609 1.097276475 0.926057804 1.219521904 1 10.54638285 -7.244669263 24.12274163 1.0767741 0.901232718 0.46506697 0.092905106 486.5378321 699853.5964 0.031351487 0.031261921 5.69E-08 7.244669263 -0.175541383 RRS(ph)SSDTAAYPAGTTAVGTPGNGTPCSQDTSFSSSR ddPTM_K562_Paclitaxel_30min_R1 2 RRSSSDTAAYPAGTTAVGTPGNGTPCSQDTSFSSSR 36 2 O15047 O15047 SETD1A Histone-lysine N-methyltransferase SETD1A 1 RRS(0.256)S(0.256)S(0.256)DT(0.195)AAY(0.026)PAGT(0.005)T(0.005)AVGT(0.001)PGNGTPCSQDTSFSSSR;RRS(0.322)S(0.322)S(0.322)DT(0.03)AAY(0.002)PAGTTAVGTPGNGTPCSQDTSFSSSR 81.455 1.54E-09 17016500 1156.79 799.38 895.87 1107.76 848.73 1008.69 951.7 1075.57 775.16 1061.49 TRUE FALSE 1172.988629 886.6590117 669.6965385 1036.713232 964.3413951 1187.567009 1132.280107 984.193615 849.6175815 845.1577553 1.387893114 1.049104745 0.792392348 1.226650557 1.1410194 1.405142414 1.339726341 1.164508766 1.005276916 1 9.723076847 -5.247602591 23.64856261 1.138778264 1.387893465 0.1752504 0.168767646 2292.986349 3918818.611 0.045746787 0.837697326 5.65E-06 5.247602591 0.249115201 RRT(ph)CETGEPMEAESGDTSSEGPAQVYLPGR ddPTM_K562_Paclitaxel_30min_R1 1 RRTCETGEPMEAESGDTSSEGPAQVYLPGR 30 2 Q9BQ67 Q9BQ67 GRWD1 Glutamate-rich WD repeat-containing protein 1 1 RRT(0.5)CET(0.5)GEPMEAESGDTSSEGPAQVYLPGR 77.907 0.0002708 12692000 533.71 501.26 606.11 487.18 678.87 617.54 430.07 627.17 647.92 707.59 TRUE FALSE 541.1835866 555.989262 453.0900342 455.9344553 771.3435874 727.0520483 511.6735374 573.8879938 710.155611 563.3827696 0.960596624 0.986876582 0.804231259 0.809280084 1.369128821 1.290511687 0.908216518 1.018646691 1.260520643 1 9.137971631 -6.737063625 24.99994601 1.137922516 0.891004351 0.423010533 0.143536582 251.817039 258264.1537 0.045424565 0.058614394 1.83E-07 6.737063625 -0.246918165 RRT(ph)SDPSAAVNHVSSTTSLESCSVAR ddPTM_K562_Paclitaxel_30min_R1 1 RRTSDPSAAVNHVSSTTSLESCSVAR 26 2 F8WEN4;C9JC25 F8WEN4 ATL2 1 RRT(0.608)S(0.196)DPS(0.196)AAVNHVSSTTSLESCSVAR 84.947 0.00072261 14993000 529.4 634.84 727.51 787.79 690.36 643.37 389.94 661.41 750 731.93 TRUE FALSE 536.8132333 704.1539781 543.8411028 737.2646754 784.3987199 757.4626361 463.9290794 605.2190921 822.0408511 582.7622642 0.921153044 1.208304005 0.933212626 1.265120823 1.346001222 1.299779829 0.796086342 1.038535144 1.410593825 1 9.186763651 -4.720224129 2.210508516 1.143834383 1.24E-13 0.107407633 0.188256317 21.25002286 20.70860232 0.051248943 87.8216757 1.90E-05 4.720224129 -1.143834383 RRTSDPS(ph)AAVNHVSSTTSLGENYEDDDLVNSDEVMK ddPTM_K562_Paclitaxel_30min_R1 2 RRTSDPSAAVNHVSSTTSLGENYEDDDLVNSDEVMK 36 2 H7C3A2;Q8NHH9-2;Q8NHH9 H7C3A2 ATL2 Atlastin-2 1 RRT(0.122)S(0.122)DPS(0.179)AAVNHVS(0.103)S(0.103)T(0.103)T(0.091)S(0.091)LGENY(0.086)EDDDLVNSDEVMK;RRT(0.032)S(0.146)DPS(0.717)AAVNHVS(0.009)S(0.009)T(0.009)T(0.038)S(0.038)LGENY(0.002)EDDDLVNSDEVMK 73.797 3.19E-07 107081000 3415.8 2855.9 5564.4 3892.2 3043.7 2670.2 2659.7 3943.2 2965.3 5161.5 TRUE FALSE 3463.631739 3167.71682 4159.5984 3642.571713 3458.30347 3143.722479 3164.36419 3608.200547 3250.130314 4109.583467 0.8428182 0.770812138 1.012170317 0.886360319 0.841521653 0.764973507 0.769996331 0.877996657 0.790866116 1 12.00477646 RRVNDAEPGS(ph)PEAPQGK ddPTM_K562_Paclitaxel_30min_R1 1 RRVNDAEPGSPEAPQGK 17 2 Q8N8A6 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 1 RRVNDAEPGS(1)PEAPQGK 160.02 7.18E-07 22452000 5451 4649.5 8910.4 6394.6 4806.7 4489.9 4287.5 6638.1 5604.6 8597.3 TRUE FALSE 5527.330818 5157.148134 6660.859318 5984.478977 5461.453918 5286.120724 5101.030743 6074.151971 6142.946872 6845.165541 0.807479496 0.753400061 0.973074979 0.874263587 0.797855638 0.772241474 0.745201955 0.88736378 0.897413925 1 12.74086972 -8.949205626 1.767999199 0.996042948 0.822063471 0.422387341 0.064828763 0.363835311 2.56017166 0.066464802 0.019117956 1.12E-09 8.949205626 -0.173979477 RRVS(ph)EVEEEKEPVPQPLPSDDTR ddPTM_K562_Paclitaxel_30min_R1 1 RRVSEVEEEKEPVPQPLPSDDTR 23 3 O43290 O43290 SART1 U4/U6.U5 tri-snRNP-associated protein 1 1 RRVS(1)EVEEEKEPVPQPLPSDDTR 61.136 0.01865 28931000 1245.9 1099.8 2720 1471.2 1194.4 1102.9 1102.7 1555.6 942.4 1949.4 TRUE FALSE 1263.346444 1219.879883 2033.302359 1376.843817 1357.097501 1298.48383 1311.931569 1423.44207 1032.921731 1552.11121 0.813953559 0.785948762 1.310023629 0.88707807 0.87435584 0.836592005 0.845256165 0.917100567 0.665494666 1 10.60001622 -6.505819692 24.80434987 0.853489979 0.976068997 0.098186715 0.153491129 1514.619801 2202300.651 0.044003886 0.063531481 3.12E-07 6.505819692 0.122579018 RRY(ph)T(ph)RDGFDLDLTYVTER ddPTM_K562_Paclitaxel_30min_R1 1 RRYTRDGFDLDLTYVTER 18 3 G3V171;Q6XPS3-4;Q6XPS3-5;P56180-4;Q6XPS3-3;Q6XPS3-2;Q6XPS3-7;P56180-3;Q6XPS3;P56180-2;P56180 G3V171 TPTE2;TPTE "Phosphatidylinositol 3,4,5-trisphosphate 3-phosphatase TPTE2;Putative tyrosine-protein phosphatase TPTE" 2 RRY(1)T(1)RDGFDLDLTYVTER 53.395 0.026875 20419000 68.218 0 0 0 0 0 0 0 0 0 TRUE FALSE 69.17326247 0 0 0 0 0 0 0 0 0 0 RS(ph)AAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGR ddPTM_K562_Paclitaxel_30min_R1 2 RSAAGSPPAVAAAGSGNGAGGGGGVGCAPAAGAGR 35 1 Q86VQ1 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 RS(0.89)AAGS(0.11)PPAVAAAGSGNGAGGGGGVGCAPAAGAGR;RS(0.925)AAGS(0.075)PPAVAAAGSGNGAGGGGGVGCAPAAGAGR 154.45 7.49E-41 33326000 2169.01 2069.3 2503.2 2384 2417.3 1696.71 2027.47 2547.1 2400.1 2818.5 TRUE FALSE 2199.382832 2295.233172 1871.236201 2231.10091 2746.577185 1997.597696 2412.171848 2330.707957 2630.640329 2244.088153 0.980078625 1.022791003 0.833851468 0.994212686 1.223916797 0.890160083 1.074900665 1.038599109 1.172253561 1 11.13191363 -6.529726005 24.99890361 1.064603636 0.946751519 0.24720798 0.095913898 238.661082 871330.8826 0.027611721 0.035730107 2.95E-07 6.529726005 -0.117852117 RS(ph)ACAS(ph)RTDPS(ph)TQQQLPENR ddPTM_K562_Paclitaxel_30min_R1 1 RSACASRTDPSTQQQLPENR 20 2 Q9NYP7-2 Q9NYP7-2 3 RS(1)ACAS(0.998)RT(0.112)DPS(0.445)T(0.445)QQQLPENR 66.152 0.01648 0 509.57 399 587.13 510.73 563.86 357.06 331.18 325.43 643.21 493.41 TRUE FALSE 516.7055522 442.5641693 438.90177 477.9740637 640.6672782 420.3795776 394.0196761 297.7826902 704.9931944 392.8527712 1.315265133 1.126539513 1.117216938 1.216674792 1.630807583 1.070069014 1.002970337 0.758000737 1.794548101 1 8.617844927 RS(ph)ASPDDDLGSSNWEAADLGNEER ddPTM_K562_Paclitaxel_30min_R1 2 RSASPDDDLGSSNWEAADLGNEER 24 1 E9PQA1;E9PM92;O00193 E9PQA1 C11orf58;SMAP Small acidic protein 1 RS(0.5)AS(0.5)PDDDLGS(0.001)SNWEAADLGNEER;RS(0.5)AS(0.5)PDDDLGSSNWEAADLGNEER 92.788 8.77E-05 70437000 1163.81 1096.9 1610.58 1179.81 1475.61 1064.45 1080.36 1253.13 1304.39 1343.88 TRUE FALSE 1180.106931 1216.663251 1203.96916 1104.142267 1676.613064 1253.215262 1285.35267 1146.668785 1429.682488 1069.996518 1.102907262 1.137072159 1.125208483 1.031912019 1.566933196 1.171233028 1.201268087 1.071656557 1.336156205 1 10.06339039 RS(ph)ASPHDVDLCLVSPCEFEHR ddPTM_K562_Paclitaxel_30min_R1 4 RSASPHDVDLCLVSPCEFEHR 21 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 RS(0.5)AS(0.5)PHDVDLCLVSPCEFEHR;RS(0.5)AS(0.5)PHDVDLCLVSPCEFEHR;RS(0.5)AS(0.5)PHDVDLCLVSPCEFEHR;RS(0.5)AS(0.5)PHDVDLCLVSPCEFEHR 94.325 0.00024961 158232000 6981.7 7054.7 7924 7405.2 6616.5 6835 7539.5 8937.8 7596.2 10293.6 TRUE FALSE 7079.46534 7824.956003 5923.488197 6930.263616 7517.779318 8047.091282 8970.080766 8178.478102 8325.848951 8195.75867 0.863796218 0.954756761 0.722750442 0.845591469 0.917276804 0.981860448 1.094478392 0.997891523 1.015872878 1 13.00066179 -7.156028856 2.257845023 1.026742213 0.846996855 0.655979721 0.058937659 0.197613568 1.977456229 0.022858935 0.022598281 6.98E-08 7.156028856 -0.179745358 RS(ph)ASPHDVDLCLVSPCEFEHRK ddPTM_K562_Paclitaxel_30min_R1 3 RSASPHDVDLCLVSPCEFEHRK 22 2 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 RS(0.592)AS(0.408)PHDVDLCLVSPCEFEHRK;RS(0.574)AS(0.426)PHDVDLCLVSPCEFEHRK;RS(0.594)AS(0.406)PHDVDLCLVSPCEFEHRK 74.505 0.00091862 179839000 7588.3 6566.4 11689.2 8346.2 6372.1 5806.4 6628.78 9952.7 8475.1 11421.2 TRUE FALSE 7694.559612 7283.341758 8738.11689 7810.912088 7240.087901 6836.083514 7886.5564 9107.156012 9289.171223 9093.553171 0.846155454 0.800934643 0.960913377 0.858950505 0.796178102 0.751750541 0.86726896 1.001495877 1.021511729 1 13.1506284 -8.229838215 4.077304204 1.011341737 0.837332345 0.691347871 0.051552071 0.133293906 5.054793794 0.029859127 0.015450542 5.89E-09 8.229838215 -0.174009392 RS(ph)DSLLSFR ddPTM_K562_Paclitaxel_30min_R1 2 RSDSLLSFR 9 1 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 RS(0.999)DS(0.001)LLSFR;RS(0.63)DS(0.37)LLSFR 102.4 0.005967 32351000 1598.65 1386.71 2123.68 1391.62 1146.75 1483.79 1777.16 2487 1599.21 2921.7 TRUE FALSE 1621.036032 1538.115687 1587.530719 1302.367722 1302.956765 1746.919323 2114.366833 2275.713827 1752.821266 2326.255936 0.696843373 0.661197963 0.682440265 0.559855733 0.560108948 0.750957492 0.908914105 0.978273195 0.753494591 1 11.18379412 -7.589518191 3.386401053 0.908332307 0.633139631 0.753173304 0.074868357 0.12205089 2.838252245 0.030630362 0.023410565 2.57E-08 7.589518191 -0.275192676 RS(ph)EGFS(ph)MDRKVEK ddPTM_K562_Paclitaxel_30min_R1 2 RSEGFSMDRKVEK 13 3 Q7Z4V5-2;Q7Z4V5;Q7Z4V5-4;Q7Z4V5-3;K7ERA4 Q7Z4V5-2 HDGFRP2 Hepatoma-derived growth factor-related protein 2 2 RS(1)EGFS(1)MDRKVEK;RS(1)EGFS(1)MDRKVEK 78.486 0.016611 100053000 2389.97 2317.65 3325.52 2761.25 2651.39 2720.62 2111.64 2355.71 2450.87 2363.28 TRUE FALSE 2423.436954 2570.698865 2485.951346 2584.155784 3012.554206 3203.083758 2512.312667 2155.577732 2686.287014 1881.642239 1.287937156 1.366199595 1.321160471 1.373351284 1.601023906 1.702280961 1.335170212 1.145583197 1.427628993 1 10.87777664 -11.72734108 9.453033279 0.998947504 1.397816969 0.388119433 0.148988137 0.003664379 0.000105694 0.159949659 0.03871144 1.87E-12 11.72734108 0.398869465 RS(ph)ESPPAELPSLR ddPTM_K562_Paclitaxel_30min_R1 1 RSESPPAELPSLR 13 1 H7C1L9;G5E9G6;Q14669;Q14669-2;Q14669-3 H7C1L9 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 RS(0.618)ES(0.382)PPAELPSLR 76.051 0.024725 26921000 997.65 1084.5 1023.3 992.9 954.4 988.53 980.86 1196.3 649.37 1062.5 TRUE FALSE 1011.620178 1202.909378 764.955259 929.2198381 1084.405438 1163.831916 1166.973065 1094.666848 711.74489 845.9619168 1.195822363 1.421942706 0.904243139 1.098418049 1.281860822 1.375749774 1.379462883 1.293990694 0.84134389 1 9.724448908 -8.758290852 24.99998265 0.920671875 1.243871642 0.428673224 0.14927833 76.95273974 611061.1695 0.119065037 0.040689109 1.74E-09 8.758290852 0.323199767 RS(ph)GPPGLQGR ddPTM_K562_Paclitaxel_30min_R1 1 RSGPPGLQGR 10 1 O43612 O43612 HCRT Orexin;Orexin-A;Orexin-B 1 RS(1)GPPGLQGR 75.378 0.027162 1589500 462.38 381.28 675.93 386.15 357.88 491.89 414.67 461.09 465.24 563.21 TRUE FALSE 468.8547466 422.9094398 505.2831117 361.3840673 406.629315 579.119785 493.3514678 421.9175265 509.9283807 448.4274928 1.045553081 0.943094361 1.126788878 0.805891862 0.90678944 1.291445762 1.100181134 0.940882379 1.137147898 1 8.808730921 RS(ph)GS(ph)VIGKY(ph)VDS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 RSGSVIGKYVDSR 13 2 H0YFI5;Q9BSW2-2 H0YFI5 CRACR2A 4 RS(1)GS(1)VIGKY(1)VDS(1)R 65.949 0.024054 10108000 183.83 168.75 48.411 233.57 59.329 53.304 137.54 157.86 200.53 148.75 TRUE FALSE 186.4041872 187.1746957 36.18904431 218.5898656 67.41061425 62.75671597 163.637497 144.4488077 219.7918025 118.4346683 1.57389884 1.580404609 0.305561242 1.845657768 0.569179744 0.529884677 1.381668892 1.2196497 1.85580629 1 6.88794764 -9.994936221 12.3156055 1.000000715 1.176974762 0.010692931 0.53098741 0 0 0.509455261 0.12356105 1.01E-10 9.994936221 0.176974048 RS(ph)LSMDSQVPVYSPSIDLK ddPTM_K562_Paclitaxel_30min_R1 1 RSLSMDSQVPVYSPSIDLK 19 1 Q9ULJ3;Q9ULJ3-2 Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 RS(0.488)LS(0.488)MDS(0.023)QVPVYSPSIDLK 61.757 0.021418 20627000 558.33 606.28 751.08 480.66 431.91 320.42 559.88 523.28 639.9 651.67 TRUE FALSE 566.1483426 672.4757007 561.4605648 449.832619 490.7434543 377.2419881 666.1143072 478.8240978 701.3652541 518.8592963 1.091140405 1.29606563 1.082105628 0.866964555 0.945812203 0.727060285 1.283805286 0.922839971 1.351744604 1 9.019199553 -5.992912546 21.76836179 1.004741099 1.192474127 0.133743528 0.18043832 65.51646896 201202.3329 0.046464442 0.096163487 1.02E-06 5.992912546 0.187733028 RS(ph)NSSGNLHMAGLTASPTPPSSSIITY ddPTM_K562_Paclitaxel_30min_R1 3 RSNSSGNLHMAGLTASPTPPSSSIITY 27 1 Q9UKI8;Q9UKI8-5;Q9UKI8-2;Q9UKI8-4;Q9UKI8-3 Q9UKI8 TLK1 Serine/threonine-protein kinase tousled-like 1 1 RS(0.693)NS(0.211)S(0.093)GNLHMAGLT(0.001)ASPTPPSSSIITY;RS(0.84)NS(0.112)S(0.048)GNLHMAGLTASPTPPSSSIITY;RS(0.361)NS(0.277)S(0.361)GNLHMAGLTASPTPPSSSIITY 80.36 1.83E-05 176335000 2601.41 2535.36 2977.68 2787.39 2582.77 2456.56 2974.82 3108.17 3002.29 3863.1 TRUE FALSE 2637.837766 2812.179179 2225.927857 2608.619281 2934.587001 2892.196424 3539.276565 2844.111558 3290.673369 3075.798099 0.857610832 0.914292515 0.723691148 0.848111351 0.954089607 0.940307631 1.150685595 0.924674334 1.069860005 1 11.58674509 -7.0310648 1.845171676 1.025193125 0.832876305 0.578698618 0.073417392 0.250286588 1.712459979 0.02757988 0.029697221 9.31E-08 7.0310648 -0.19231682 RS(ph)PVGVLGTSAPGSSR ddPTM_K562_Paclitaxel_30min_R1 1 RSPVGVLGTSAPGSSR 16 1 Q13356-2 Q13356-2 1 RS(1)PVGVLGTSAPGSSR 86.777 0.0084655 21678000 1128 1070.1 1436.5 1160.4 1160.5 1107.4 1162.4 1256.5 945.61 1227.5 TRUE FALSE 1143.79548 1186.937137 1073.837809 1085.977138 1318.579747 1303.781841 1382.959332 1149.752482 1036.440066 977.3348262 1.170321009 1.214463155 1.098740963 1.111161813 1.349158663 1.334017582 1.415031261 1.176416159 1.060475937 1 9.932709091 -8.748701066 3.224447897 1.012001068 1.240773834 0.424921449 0.097473386 0.260146615 5.171894954 0.099784885 0.028718905 1.78E-09 8.748701066 0.228772767 RS(ph)PVPAQIAITVPK ddPTM_K562_Paclitaxel_30min_R1 2 RSPVPAQIAITVPK 14 1 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 RS(1)PVPAQIAITVPK;RS(1)PVPAQIAITVPK 137.69 6.17E-06 49682000 15728.2 14210.4 29264 17474.7 14485.9 12856.6 13150.7 19346.3 11950.2 22562.9 TRUE FALSE 15948.44333 15761.93953 21875.94127 16353.95096 16459.12483 15136.53749 15645.97667 17702.71106 13098.0701 17964.56859 0.88777213 0.877390372 1.217727058 0.910344764 0.916199281 0.842577288 0.870935285 0.985423667 0.729105741 1 14.13286667 -6.498675802 24.9777756 0.88900924 0.996177563 0.147180091 0.111960719 1399.427009 1444228.544 0.031257919 0.046073533 3.17E-07 6.498675802 0.107168323 RS(ph)QS(ph)LPT(ph)T(ph)LLSPVR ddPTM_K562_Paclitaxel_30min_R1 1 RSQSLPTTLLSPVR 14 1 E7EUL7;E9PHV5;P28290-2;P28290-3;P28290 E7EUL7 SSFA2 Sperm-specific antigen 2 4 RS(1)QS(0.998)LPT(0.986)T(0.986)LLS(0.031)PVR 67.115 0.020867 6855600 136.42 0 49.829 140 52.486 0 136.37 122.35 0 199.57 TRUE FALSE 138.3303009 0 37.24905267 131.0210266 59.6354818 0 162.2454956 111.9556038 0 158.8975245 0.87056297 0 0.234421856 0.824563045 0.375307809 0 1.021070002 0.704577395 0 1 7.311952838 -12.12224403 2.536706104 2.126565243 0.448572046 0.167108488 0.369813041 29678381.88 8193742.157 192798276.8 0.097241799 7.55E-13 12.12224403 -1.677993197 RS(ph)S(ph)IRS(ph)VDMEEMGTGRATDY(ph)VFR ddPTM_K562_Paclitaxel_30min_R1 1 RSSIRSVDMEEMGTGRATDYVFR 23 3 O43147-5;O43147;O43147-2 O43147-5 SGSM2 Small G protein signaling modulator 2 4 RS(0.929)S(0.925)IRS(0.885)VDMEEMGT(0.256)GRAT(0.264)DY(0.741)VFR 44.743 0.020111 3110700 575.72 584.32 477.8 418.14 544 410.13 583.04 642.2 490.31 560.41 TRUE FALSE 583.7818562 648.1180336 357.1734806 391.3223719 618.10201 482.860797 693.6687963 587.6411015 537.4064663 446.1981344 1.308346699 1.452534163 0.800481789 0.87701481 1.385263546 1.082166777 1.554620566 1.316995873 1.204412177 1 8.801540671 -6.796981465 24.99965401 1.279207951 1.112009645 0.087115875 0.227526308 431.9301235 303809.3819 0.074165824 0.084099189 1.60E-07 6.796981465 -0.167198306 RS(ph)S(ph)PRT(ph)ISFRMK ddPTM_K562_Paclitaxel_30min_R1 1 RSSPRTISFRMK 12 3 E9PDI4;O00515 E9PDI4 LAD1 Ladinin-1 3 RS(1)S(1)PRT(0.649)IS(0.351)FRMK 78.985 0.012727 13476000 3905.1 2844.5 8144.4 4527.3 3667.1 2952.3 1955.3 3039.6 3212.3 3355.2 TRUE FALSE 3959.783448 3155.072129 6088.245491 4236.939241 4166.621105 3475.848953 2326.307968 2781.367007 3520.855768 2671.408398 1.482283072 1.181051962 2.279039586 1.586032014 1.559709518 1.301129754 0.870817045 1.041161288 1.317977352 1 11.38338483 -7.383380238 2.695614233 1.061684182 1.635657992 0.476662257 0.276261205 0.261072655 3.686055706 0.111886248 0.096002666 4.14E-08 7.383380238 0.57397381 RS(ph)SAGSLESNVEGSIISSPHMR ddPTM_K562_Paclitaxel_30min_R1 1 RSSAGSLESNVEGSIISSPHMR 22 1 A0A3B3IRZ4;Q6DN90-3 A0A3B3IRZ4 IQSEC1 IQ motif and SEC7 domain-containing protein 1 1 RS(0.722)S(0.195)AGS(0.079)LES(0.004)NVEGSIISSPHMR 63.674 0.0079825 34593000 623.17 669.9 1077.7 764.29 688 689.49 571.98 707.08 920.25 819.44 TRUE FALSE 631.8963026 743.0419475 805.6213062 715.2718602 781.7172479 811.7613706 680.5102191 647.0091405 1008.644124 652.4376782 0.968515958 1.138870381 1.234786606 1.096306795 1.198148534 1.244197565 1.043027161 0.991679607 1.545962408 1 9.34969629 -5.278770023 4.081565526 1.166666658 0.954608425 0.132325217 0.15305103 0.427397807 15.32762331 0.036588453 0.25892451 5.26E-06 5.278770023 -0.212058233 RS(ph)SDPALIGLSTSVSDSNFSSEEPSR ddPTM_K562_Paclitaxel_30min_R1 1 RSSDPALIGLSTSVSDSNFSSEEPSR 26 1 Q5VWU8;Q5VWV2;Q8TEW0-9;Q8TEW0-10;Q8TEW0-8;Q8TEW0-5;Q8TEW0-3;Q8TEW0-7;Q8TEW0-6;Q8TEW0-4;Q8TEW0-11;Q8TEW0-2;Q8TEW0 Q5VWU8 PARD3 Partitioning defective 3 homolog 1 RS(0.5)S(0.5)DPALIGLSTSVSDSNFSSEEPSR 161.68 2.73E-26 77093000 1463.5 1590.1 1943.6 1538 1541.5 1501.8 1173.4 1873.4 1457.8 2055.8 TRUE FALSE 1483.993515 1763.712495 1452.914142 1439.359564 1751.478398 1768.123144 1396.046524 1714.242977 1597.828204 1636.826832 0.906628292 1.077519296 0.887640717 0.879359708 1.070045019 1.08021393 0.852898118 1.047296479 0.976174249 1 10.67668598 -6.760137065 24.99988647 1.003014589 0.944186017 0.144129065 0.078909019 83.90081597 1610578.454 0.024346192 0.029712686 1.74E-07 6.760137065 -0.058828572 RS(ph)SDPLGDTASNLGSAVDELMR ddPTM_K562_Paclitaxel_30min_R1 1 RSSDPLGDTASNLGSAVDELMR 22 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 RS(0.5)S(0.5)DPLGDTASNLGSAVDELMR 134.87 1.40E-11 13133000 1272.2 1261.9 1727 1373.2 1057.1 1287.1 1330 1677.8 1120.5 1793.9 TRUE FALSE 1290.014725 1399.678509 1290.997491 1285.129098 1201.094917 1515.349113 1582.360557 1535.260418 1228.129032 1428.302195 0.903180524 0.979959643 0.90386859 0.89975994 0.840924925 1.060944328 1.107861181 1.074884869 0.859852373 1 10.48008554 -7.272761171 24.96723038 1.030835898 0.90925939 0.400378265 0.069850073 750.2945931 1654572.73 0.025248749 0.022465276 5.34E-08 7.272761171 -0.121576508 RS(ph)SFSEGQTLTVTSGAK ddPTM_K562_Paclitaxel_30min_R1 1 RSSFSEGQTLTVTSGAK 17 1 E9PEM3;H0Y6E6;Q92622-3;Q92622-2;Q92622;H7C3H3;H7C357 E9PEM3 KIAA0226 Run domain Beclin-1 interacting and cysteine-rich containing protein 1 RS(0.333)S(0.333)FS(0.333)EGQTLTVTSGAK 128.4 8.39E-06 7353500 4168.2 4004 7177.6 4312.6 3904.1 3424.8 3419.2 4692.5 3968.6 5203 TRUE FALSE 4226.56766 4441.170261 5365.526109 4036.009138 4435.904517 4032.140193 4067.975351 4293.842835 4349.801762 4142.625744 1.020262974 1.072066495 1.295199335 0.97426352 1.070795382 0.973329584 0.981979933 1.036502716 1.050010798 1 12.01632977 RS(ph)SIRSVDMEEMGTGRAT(ph)DY(ph)VFR ddPTM_K562_Paclitaxel_30min_R1 1 RSSIRSVDMEEMGTGRATDYVFR 23 3 O43147-5;O43147;O43147-2 O43147-5 SGSM2 Small G protein signaling modulator 2 3 RS(0.334)S(0.334)IRS(0.334)VDMEEMGT(0.318)GRAT(0.85)DY(0.83)VFR 49.768 0.015036 18057000 353.75 319.55 394 371.77 395.51 330.51 388.21 348.52 469.63 406.75 TRUE FALSE 358.7035914 354.4395496 294.5298271 347.9263362 449.385158 389.1213079 461.8708209 318.9110506 514.7400599 323.8541267 1.107608524 1.094441974 0.909452135 1.074330408 1.38761597 1.201532652 1.426169324 0.98473672 1.589419487 1 8.339200318 -6.635894584 6.810986556 1.26837518 1.0349691 0.262455939 0.17997656 0.277035031 15.49968223 0.049439111 0.063914264 2.31E-07 6.635894584 -0.23340608 RS(ph)SLLSR ddPTM_K562_Paclitaxel_30min_R1 1 RSSLLSR 7 1 C9J417;O43521-11;O43521-10;O43521-14;O43521-19;O43521-4;O43521-8;O43521-12;O43521 C9J417 BCL2L11 Bcl-2-like protein 11 1 RS(0.811)S(0.189)LLSR 71.614 0.028349 7509300 1606.2 1969.6 2288.4 2140 1893.5 1999.2 1604.3 2111.7 1767 2316.1 TRUE FALSE 1628.691756 2184.647589 1710.665117 2002.749978 2151.426757 2353.73005 1908.70755 1932.297904 1936.728245 1844.077549 0.883201336 1.184683144 0.927653568 1.086044337 1.166668267 1.276372597 1.035047334 1.04783983 1.050242299 1 10.84868361 -3.211921877 18.18431562 1.07493812 0.446655725 0 0.113209769 0 0 0.025764536 0 0.000613872 3.211921877 -0.628282396 RS(ph)SLPLDHGSPAQENPESEK ddPTM_K562_Paclitaxel_30min_R1 2 RSSLPLDHGSPAQENPESEK 20 1 Q5VZ89-5;Q5VZ89-3;Q5VZ89;Q5VZ89-7;X6RAE7;A0A0A0MRX3;X6R5W5 Q5VZ89-5 DENND4C DENN domain-containing protein 4C 1 RS(0.484)S(0.484)LPLDHGS(0.031)PAQENPESEK;RS(0.456)S(0.456)LPLDHGS(0.087)PAQENPESEK 63.573 0.009895 18380400 1619.2 1522.25 3166.5 2079.97 1895.24 1847.75 1910.94 2531.78 1647.99 3257.4 TRUE FALSE 1641.873796 1688.454403 2367.077912 1946.570034 2153.403775 2175.422519 2273.530889 2316.689486 1806.286803 2593.540092 0.633062817 0.651023058 0.912682214 0.750545573 0.830295156 0.838784997 0.876612972 0.893253778 0.696456094 1 11.34070696 -5.746448846 24.27602695 0.842335161 0.642042653 0.519024609 0.079749276 127.6478755 206710.9733 0.019036681 0.049883588 1.79E-06 5.746448846 -0.200292508 RS(ph)SLSSHSHQSQIYR ddPTM_K562_Paclitaxel_30min_R1 2 RSSLSSHSHQSQIYR 15 1 F1T0I1;O15027-2;O15027-4;O15027-3;O15027;O15027-5;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 F1T0I1 SEC16A Protein transport protein Sec16A 1 RS(0.478)S(0.478)LS(0.037)S(0.003)HS(0.003)HQSQIYR;RS(0.483)S(0.483)LS(0.016)S(0.016)HS(0.001)HQSQIYR 79.332 0.011756 69243000 966.13 853.02 1451.39 1251.92 1034.62 1266.07 1474.13 1582.9 1023.94 2014.05 TRUE FALSE 979.6588008 946.1556083 1084.968644 1171.627455 1175.55276 1490.589738 1753.838472 1448.422765 1122.294012 1603.585504 0.61091772 0.590025044 0.676589206 0.730629861 0.733077692 0.929535553 1.093698133 0.903240121 0.699865401 1 10.64708557 -6.942621006 1.63512432 0.929288843 0.631808675 0.634437842 0.098976624 0.25692999 1.407207631 0.040536174 0.047010807 1.14E-07 6.942621006 -0.297480168 RS(ph)SPAAFINPPIGTVTPALK ddPTM_K562_Paclitaxel_30min_R1 2 RSSPAAFINPPIGTVTPALK 20 1 Q6R954;F8WEE2;Q8WUT1;F8WCX5;F6VRR5;Q9BY77-2;Q9BY77 Q6R954 PDIP46;POLDIP3 Polymerase delta-interacting protein 3 1 RS(0.5)S(0.5)PAAFINPPIGTVTPALK;RS(0.5)S(0.5)PAAFINPPIGTVTPALK 105.91 0.00022218 30190000 4846.1 3790.1 7843 5220.3 3736.5 3527.4 3882.7 5853.2 4679.8 6478 TRUE FALSE 4913.960351 4203.915935 5862.937649 4885.493323 4245.474559 4152.934863 4619.422056 5355.934125 5129.3157 5157.780044 0.952727784 0.81506305 1.13671727 0.947208543 0.823120514 0.805178745 0.895622151 1.038418482 0.99448128 1 12.33253453 -8.257311645 24.57709654 1.012337413 0.909777009 0.201335858 0.091389435 479.1416253 2852900.103 0.048010903 0.026398481 5.53E-09 8.257311645 -0.102560405 RS(ph)SPPGHYYQK ddPTM_K562_Paclitaxel_30min_R1 1 RSSPPGHYYQK 11 1 Q9NX40;D6RG39;Q9NX40-4;Q9NX40-2;Q9NX40-3;D6RIT9;D6RBN5;D6RDK6;D6RI08;D6RIV2;D6RDK1;D6R9T5 Q9NX40 OCIAD1 OCIA domain-containing protein 1 1 RS(0.5)S(0.5)PPGHYYQK 75.589 0.027356 30550000 2486.5 2196.6 3896.5 2714.6 2031 2099.9 2328.6 3142.6 2629.7 2983.9 TRUE FALSE 2521.318672 2436.432216 2912.780384 2540.497706 2307.656585 2472.287781 2770.439694 2875.616515 2882.294435 2375.779542 1.061259526 1.025529589 1.226031428 1.06933226 0.971326061 1.040621715 1.166118171 1.210388617 1.21319945 1 11.21418525 -7.770726689 24.66124366 1.164958981 1.067023685 0.1776291 0.082766349 256.6241085 681423.839 0.035037654 0.023999416 1.70E-08 7.770726689 -0.097935296 RS(ph)SPPPPPSGSSSR ddPTM_K562_Paclitaxel_30min_R1 1 RSSPPPPPSGSSSR 14 1 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 RS(0.923)S(0.077)PPPPPSGSSSR 100.02 0.0042466 13410000 68.825 211.04 341.87 274.91 185.35 236.8 238.63 171.72 196.11 241.89 TRUE FALSE 69.78876234 234.0820609 255.5606903 257.2785031 210.597808 278.7931552 283.9087968 157.1313142 214.9472417 192.5926852 0.362364553 1.215425501 1.3269491 1.335868508 1.093488093 1.447579148 1.47414112 0.815873739 1.11607168 1 7.5894091 -5.261483631 9.990218196 1.217946803 0.360275849 0.625630355 0.194726945 0.048290508 159.5672171 0.050049909 0.280969371 5.48E-06 5.261483631 -0.857670955 RS(ph)SPSARPPDVPGQQPQAAK ddPTM_K562_Paclitaxel_30min_R1 3 RSSPSARPPDVPGQQPQAAK 20 2 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 1 RS(0.438)S(0.438)PS(0.124)ARPPDVPGQQPQAAK;RS(0.346)S(0.346)PS(0.308)ARPPDVPGQQPQAAK;RS(0.447)S(0.277)PS(0.277)ARPPDVPGQQPQAAK 107.98 0.0018295 140572000 7495.3 7045 12993.6 8418.3 6709 6633.5 6123 9049.6 7148.8 10545.3 TRUE FALSE 7600.257325 7814.196925 9713.204977 7878.387917 7622.879384 7809.858086 7284.807286 8280.779994 7835.474182 8396.162072 0.905206124 0.930686766 1.156862492 0.938332044 0.907900457 0.930170001 0.867635382 0.98625776 0.933220931 1 13.0355143 -6.483011938 24.99850598 0.932083932 1.000345605 0.126549876 0.071198468 991.1794365 621519.3313 0.020346316 0.030173284 3.29E-07 6.483011938 0.068261673 RS(ph)SPVPPVPERR ddPTM_K562_Paclitaxel_30min_R1 1 RSSPVPPVPERR 12 2 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 RS(0.767)S(0.233)PVPPVPERR 67.252 0.028052 12596000 165.54 146.86 58.893 226.19 217.71 116.35 152.82 117.72 93.187 122.56 TRUE FALSE 167.8580707 162.8946714 44.02473377 211.6831858 247.3657879 136.9830389 181.8167972 107.7189512 102.1380277 97.58220473 1.720170919 1.669307144 0.45115535 2.169280622 2.534947725 1.40377069 1.863216739 1.103879048 1.046687027 1 6.608546174 -8.314585666 7.118393799 1.050601261 1.679118118 0.247154123 0.509618109 0.434751182 49.67906232 0.297716989 0.14241625 4.85E-09 8.314585666 0.628516856 RS(ph)STVAPAQPDGAESEWTDVETR ddPTM_K562_Paclitaxel_30min_R1 2 RSSTVAPAQPDGAESEWTDVETR 23 1 Q02241-2;A0A2U3TZL8;Q02241-3;Q02241;H7BYN4 Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 RS(0.78)S(0.11)T(0.11)VAPAQPDGAESEWTDVETR;RS(0.911)S(0.065)T(0.023)VAPAQPDGAESEWTDVETR 151.3 8.48E-19 43734000 2168.47 2270.9 2817.4 2520.5 1745.18 1879.82 2082 2622.9 2332.8 2913.1 TRUE FALSE 2198.83527 2518.844542 2106.112525 2358.846411 1982.903062 2213.179683 2477.048631 2400.068273 2556.875863 2319.408621 0.948015477 1.085985677 0.908038586 1.017003382 0.854917518 0.95419999 1.067965605 1.034775956 1.102382668 1 11.17954129 -7.75928303 24.99428115 1.054179063 0.96229213 0.332607028 0.062338581 67.73612653 785147.2548 0.024562243 0.018080508 1.74E-08 7.75928303 -0.091886933 RS(ph)Y(ph)ALVS(ph)LS(ph)FFRK ddPTM_K562_Paclitaxel_30min_R1 1 RSYALVSLSFFRK 13 2 P06213-2;P06213 P06213-2 INSR Insulin receptor;Insulin receptor subunit alpha;Insulin receptor subunit beta 4 RS(1)Y(1)ALVS(1)LS(1)FFRK 60.764 0.028064 21174000 191.2 0 110.7 122.92 0 0 0 0 152.93 261.08 TRUE FALSE 193.8773899 0 82.75241588 115.0364614 0 0 0 0 167.6196098 207.8717527 0.932677901 0 0.398093607 0.553401123 0 0 0 0 0.806360689 1 7.699549916 -8.889477487 5.133863935 0.989334566 0.221720519 0.447024698 0.299564142 0.175817463 6.61440804 0.289451473 0.075579104 1.29E-09 8.889477487 -0.767614046 RSAS(ph)ASHQADIK ddPTM_K562_Paclitaxel_30min_R1 1 RSASASHQADIK 12 1 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 RS(0.031)AS(0.89)AS(0.079)HQADIK 93.106 0.024582 0 531.46 339 695.89 393.96 325.14 338.67 321.35 415.41 419.51 642.46 TRUE FALSE 538.9020797 376.0131664 520.2039628 368.6931689 369.4295727 398.7283693 382.3244849 380.1183276 459.8058099 511.5262993 1.053517836 0.73508081 1.016964257 0.7207707 0.722210321 0.779487526 0.747419019 0.743106128 0.898889872 1 8.998664606 -3.374291517 1.789041436 0.804671091 199.9667733 0.269869945 0.11031132 1454.461866 7.300359088 0.028939928 1186563.225 0.000422385 3.374291517 199.1621023 RSAS(ph)PDDDLGSSNWEAADLGNEER ddPTM_K562_Paclitaxel_30min_R1 4 RSASPDDDLGSSNWEAADLGNEER 24 1 E9PQA1;E9PM92;O00193 E9PQA1 C11orf58;SMAP Small acidic protein 1 RS(0.116)AS(0.884)PDDDLGSSNWEAADLGNEER;RS(0.283)AS(0.717)PDDDLGSSNWEAADLGNEER;RS(0.257)AS(0.743)PDDDLGSSNWEAADLGNEER;RS(0.256)AS(0.744)PDDDLGSSNWEAADLGNEER 164.72 6.16E-26 670423000 4203.25 4048.71 5463.91 4800.74 4279.33 3817.32 4026.68 5245.34 3986.36 4815.64 TRUE FALSE 4262.108468 4490.76185 4084.478344 4492.842024 4862.247196 4494.268104 4790.721509 4799.715627 4369.26769 3834.209925 1.111600187 1.171235258 1.065272487 1.171777788 1.268122323 1.172149724 1.249467714 1.251813469 1.139548375 1 11.90471361 -6.511167199 24.4280217 1.198028901 1.121050767 0.097086715 0.077120673 711.3038066 1483642.96 0.020806965 0.029042902 3.08E-07 6.511167199 -0.076978134 RSATSTSAS(ph)PTLR ddPTM_K562_Paclitaxel_30min_R1 2 RSATSTSASPTLR 13 1 O75061-4;O75061;O75061-2 O75061-4 DNAJC6 Putative tyrosine-protein phosphatase auxilin 1 RSAT(0.002)S(0.009)T(0.005)S(0.005)AS(0.973)PT(0.006)LR;RSAT(0.013)S(0.052)T(0.052)S(0.052)AS(0.83)PT(0.001)LR 143.97 0.00010116 19161200 4580.7 4302.8 5194.8 4713.8 3725 4084.7 4217.4 5440.3 4027.1 5485.2 TRUE FALSE 4644.843933 4772.594255 3883.308492 4411.477966 4232.408065 4809.064193 5017.629634 4978.112558 4413.920949 4367.313229 1.06354724 1.092798708 0.88917563 1.010112565 0.969110261 1.101149366 1.148905373 1.139857001 1.010671943 1 12.09253029 -7.272355721 24.37387209 1.093157096 1.003684451 0.221210267 0.06834365 710.9381567 1587367.687 0.024516024 0.021838425 5.34E-08 7.272355721 -0.089472645 RSCPS(ph)FS(ph)AS(ph)S(ph)EGT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 RSCPSFSASSEGTR 14 1 D6RG38;D6RCP9;D6RFG8;P27707 D6RG38 DCK Deoxycytidine kinase 5 RS(0.025)CPS(0.983)FS(0.994)AS(0.999)S(0.999)EGT(1)R 44.612 0.029445 7408600 143.18 0 170.27 213.85 61.769 160.58 133.48 61.515 148.42 268.78 TRUE FALSE 145.1849617 0 127.2832326 200.1346182 70.18298356 189.0566083 158.8071332 56.28891679 162.6764042 214.0024885 0.678426512 0 0.594774545 0.935197621 0.327954054 0.883431822 0.742080778 0.263029263 0.760161273 1 7.741483762 -15 0.064673029 2.357659261 0.023256897 0.190272466 0.277182786 635.3336308 2.975759656 136.2727829 19.77967444 1.00E-15 15 -2.334402364 RSDEDYLYREELAQFHR ddPTM_K562_Paclitaxel_30min_R1 1 RSDEDYLYREELAQFHR 17 2 E7EMD0;H0Y4R2;P16435 E7EMD0 POR NADPH--cytochrome P450 reductase 0 68.751 0.012563 33332000 1514.1 1742.7 1967.7 1834.2 1572.1 1746.3 1941.1 2094.1 1560 2565.6 FALSE TRUE 1535.302071 1932.973879 1470.929799 1716.562622 1786.246636 2055.981786 2309.413592 1916.193134 1709.84497 2042.729312 0.751593499 0.946270202 0.720080625 0.840327992 0.874441183 1.006487631 1.130552922 0.938055338 0.837039426 1 10.99628233 -7.071994637 3.1628236 0.987213356 0.818852013 0.449689008 0.087917208 0.255306128 4.986629966 0.031375574 0.032541455 8.47E-08 7.071994637 -0.168361342 RSDGS(ph)T(ph)S(ph)SDTTSNS(ph)FVR ddPTM_K562_Paclitaxel_30min_R1 1 RSDGSTSSDTTSNSFVR 17 1 Q6TME4;Q02641-3;Q02641-2;Q02641 Q6TME4 CACNB1 Voltage-dependent L-type calcium channel subunit beta-1 4 RS(0.022)DGS(0.883)T(0.516)S(0.519)S(0.315)DT(0.316)T(0.29)S(0.285)NS(0.855)FVR 54.368 0.026093 7291100 808.94 540.03 947.03 1066.6 742.35 669.96 618.49 890.26 822.14 740.4 TRUE FALSE 820.2676558 598.9923017 707.9405638 998.1930499 843.4706381 788.7679993 735.8452488 814.6268562 901.1102204 589.5060736 1.391449033 1.016091824 1.200904614 1.693270171 1.430809072 1.338015051 1.248240318 1.381880345 1.528585134 1 9.203362867 -6.038281024 24.99347803 1.390596936 1.179952053 0.140687483 0.189610706 818.7447429 534553.1345 0.049830471 0.086333414 9.16E-07 6.038281024 -0.210644883 RSDS(ph)LLSFR ddPTM_K562_Paclitaxel_30min_R1 2 RSDSLLSFR 9 1 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 RS(0.024)DS(0.976)LLSFR;RS(0.15)DS(0.844)LLS(0.006)FR 127.52 0.0023006 77846000 7508 6418.4 7439.4 6256.4 5762.4 6399.9 7892.2 9776 6172.6 11233.1 TRUE FALSE 7613.135164 7119.182618 5561.231461 5855.142507 6547.336438 7534.832406 9389.70375 8945.46778 6765.50581 8943.788054 0.851220436 0.795991874 0.621798216 0.654660248 0.732054069 0.842465448 1.049857588 1.000187809 0.756447466 1 13.12667028 -7.464666915 3.614257793 0.95201044 0.725574346 0.542967173 0.094900674 0.192656861 5.013040895 0.038047595 0.031801974 3.43E-08 7.464666915 -0.226436094 RSDS(ph)PEIPFQAAAGPSDGLDASS(ph)PGNSFVGLR ddPTM_K562_Paclitaxel_30min_R1 1 RSDSPEIPFQAAAGPSDGLDASSPGNSFVGLR 32 1 A6NNK5;Q12888;Q12888-3;Q12888-2 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 2 RS(0.232)DS(0.768)PEIPFQAAAGPS(0.002)DGLDAS(0.09)S(0.84)PGNS(0.068)FVGLR 86.636 2.68E-07 11118000 672.67 630.88 515.6 720.06 556.04 637.39 658.76 1006.2 762.98 931.73 TRUE FALSE 682.0894554 699.7616119 385.4304031 673.8785745 631.7820618 750.4221671 783.756271 920.7170295 836.2676381 741.8429146 0.919452679 0.943274645 0.519557976 0.908384459 0.851638601 1.011564783 1.056498964 1.241121282 1.127283987 1 9.534969918 -7.429070909 1.572238967 1.134952808 0.810855545 0.529980637 0.12470359 0.296807461 1.470870141 0.060156744 0.047965346 3.72E-08 7.429070909 -0.324097263 RSDS(ph)PEIPFQAAAGPSDGLDASSPGNSFVGLR ddPTM_K562_Paclitaxel_30min_R1 3 RSDSPEIPFQAAAGPSDGLDASSPGNSFVGLR 32 1 A6NNK5;Q12888;Q12888-3;Q12888-2 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 RS(0.222)DS(0.778)PEIPFQAAAGPSDGLDASSPGNSFVGLR;RS(0.265)DS(0.735)PEIPFQAAAGPSDGLDASSPGNSFVGLR;RS(0.255)DS(0.745)PEIPFQAAAGPSDGLDASSPGNSFVGLR 137.36 1.50E-25 424900000 2821.97 2538.56 3136.63 2646.16 2370.99 2053.98 3189.08 3981.4 2932.36 4789.2 TRUE FALSE 2861.486287 2815.728566 2344.748963 2476.447141 2693.958979 2418.224514 3794.191282 3643.155219 3214.02628 3813.158411 0.750424183 0.738424231 0.614909928 0.649447748 0.706490182 0.634178876 0.995025874 0.955416698 0.842877723 1 11.89677075 -7.761018866 24.99993152 0.944614827 0.681404416 0.839772112 0.056915065 4.434473422 263660.3582 0.023339215 0.016949088 1.73E-08 7.761018866 -0.263210411 RSDS(ph)VSASER ddPTM_K562_Paclitaxel_30min_R1 1 RSDSVSASER 10 1 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 RS(0.08)DS(0.91)VS(0.01)ASER 78.529 0.023854 5771300 606.3 448.56 686.49 668.23 644.42 596.22 607.07 805.08 513.22 768.51 TRUE FALSE 614.7900706 497.5352977 513.1771091 625.3727187 732.2009141 701.9512457 722.2583634 736.6834288 562.5170741 611.8872402 1.004744061 0.813115988 0.838679213 1.022039156 1.196627199 1.147190527 1.180378207 1.203952919 0.919314928 1 9.257122004 -6.471846048 4.136998028 1.123475247 0.880853415 0.505606259 0.097377576 0.162805252 5.780302692 0.028034802 0.04117144 3.37E-07 6.471846048 -0.242621833 RSEACPCQPDSGS(ph)PLPAEEEKR ddPTM_K562_Paclitaxel_30min_R1 1 RSEACPCQPDSGSPLPAEEEKR 22 2 A0A0G2JMS7;A0A0G2JNZ2;A0A0G2JPP5;A0A669KB89;Q14160-2;Q14160;Q14160-3 A0A0G2JMS7 SCRIB Protein scribble homolog 1 RSEACPCQPDS(0.068)GS(0.932)PLPAEEEKR 133.98 1.76E-10 13036000 649.35 555.34 1258.1 632.85 576.98 552.83 485.76 781.44 706.85 998.95 TRUE FALSE 658.4429034 615.9738992 940.477095 592.2618335 655.5744444 650.8666384 577.9304242 715.0517944 774.7461008 795.3634417 0.827851607 0.774455886 1.182449489 0.744643018 0.824245131 0.818326069 0.726624325 0.899025222 0.974078088 1 9.635470441 -8.675530159 3.577710903 0.991205718 0.845913848 0.183031062 0.120463367 0.420867498 9.955508384 0.101647292 0.031879476 2.11E-09 8.675530159 -0.14529187 RSET(ph)PPHWR ddPTM_K562_Paclitaxel_30min_R1 1 RSETPPHWR 9 1 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 RS(0.006)ET(0.994)PPHWR 72.434 0.028362 32955000 582.84 507.92 481.49 342.88 424.8 338.1 311.35 449.37 416.06 507.14 TRUE FALSE 591.0015582 563.3764233 359.9318945 320.8892115 482.6649519 398.0572878 370.4270371 411.1932136 456.024422 403.7845896 1.463655556 1.395240031 0.891395818 0.794703958 1.195352582 0.985815948 0.917387752 1.018347961 1.129375498 1 8.657442041 -5.721643129 7.70373439 0.98968492 1.434468329 0.722568683 0.108558013 0.114891552 18.28526697 0.028624921 0.075124859 1.90E-06 5.721643129 0.444783409 RSFS(ph)S(ph)MSDIT(ph)GSVT(ph)LK ddPTM_K562_Paclitaxel_30min_R1 1 RSFSSMSDITGSVTLK 16 1 B0QYC4;Q9BWT7-2;Q9BWT7 B0QYC4 CARD10 Caspase recruitment domain-containing protein 10 4 RS(0.203)FS(0.883)S(0.883)MS(0.429)DIT(0.6)GS(0.156)VT(0.846)LK 51.841 0.030587 0 287.86 242.73 194.92 322.07 201.31 189.72 202.64 112.79 223.55 322.06 TRUE FALSE 291.8909281 269.2320823 145.7100353 301.4138717 228.7318302 223.3641782 241.0898821 103.2077855 245.0229763 256.4239952 1.138313627 1.049948863 0.568238691 1.175451117 0.892006343 0.871073622 0.940200163 0.402488798 0.955538409 1 8.00238746 -8.08784938 24.9999756 0.741676513 0.940958605 0.092365404 0.218982073 141.6260609 40299.70293 0.098870184 0.05708273 8.17E-09 8.08784938 0.199282092 RSHS(ph)PSIDGTPK ddPTM_K562_Paclitaxel_30min_R1 2 RSHSPSIDGTPK 12 1 A0A0C4DH56;Q9BWT3-2;Q9BWT3 A0A0C4DH56 PAPOLG Poly(A) polymerase gamma 1 RS(0.041)HS(0.943)PS(0.016)IDGTPK;RS(0.135)HS(0.861)PS(0.004)IDGTPK 84.41 0.015513 25065000 5182.7 4162.1 8030.3 5853.3 4499 3542.6 3506.5 5566.7 4307.9 5926.3 TRUE FALSE 5255.27379 4616.532153 6002.951448 5477.895536 5111.839969 4170.830369 4171.84007 5093.774089 4721.693043 4718.516807 1.113755446 0.97838629 1.272211522 1.160935896 1.083357372 0.883928264 0.884142251 1.079528652 1.000673143 1 12.20411773 -7.064199903 6.114218659 0.969778147 1.129710554 0.449128582 0.085498532 0.229454596 16.86401837 0.030048459 0.03037926 8.63E-08 7.064199903 0.159932408 RSHT(ph)ITMTTTSVSSWPY(ph)S(ph)SHRMR ddPTM_K562_Paclitaxel_30min_R1 1 RSHTITMTTTSVSSWPYSSHRMR 23 2 Q9UPC5 Q9UPC5 GPR34 Probable G-protein coupled receptor 34 3 RS(0.019)HT(0.197)IT(0.197)MT(0.197)T(0.197)T(0.197)S(0.104)VS(0.119)S(0.105)WPY(0.722)S(0.728)S(0.22)HRMR 42.123 0.02415 47634000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 RSISSDT(ph)S(ph)SNK ddPTM_K562_Paclitaxel_30min_R1 1 RSISSDTSSNK 11 1 Q6ZVF9 Q6ZVF9 GPRIN3 G protein-regulated inducer of neurite outgrowth 3 2 RSISS(0.009)DT(0.635)S(0.722)S(0.634)NK 89.403 0.015513 13071000 118.93 152.64 196.4 111.59 0 0 66.386 125.03 0 71.12 TRUE FALSE 120.5953869 169.3057514 146.816391 104.4331169 0 0 78.98239694 114.4079211 0 56.62570496 2.129693344 2.989909821 2.592751667 1.844270494 0 0 1.394815252 2.020423784 0 1 5.823385201 -6.542986036 4.772317351 0.783434453 2.568115708 0.623005725 0.647038345 0.13445857 7.947526306 0.205857566 0.279597788 2.86E-07 6.542986036 1.784681255 RSIVPS(ph)SPQPQR ddPTM_K562_Paclitaxel_30min_R1 1 RSIVPSSPQPQR 12 1 A0A1X7SBY3;H0Y860;Q9P246;Q9P246-2;H7C5K2;H7C5C6;H7C5A5;Q9P246-3 A0A1X7SBY3 STIM2 Stromal interaction molecule 2 1 RS(0.001)IVPS(0.98)S(0.02)PQPQR 103.14 0.005117 12621000 1247.9 1374.9 1662 1402 1086.8 1203.1 1246 1527 1112.5 1660.7 TRUE FALSE 1265.37445 1525.016232 1242.407545 1312.081995 1234.84056 1416.452893 1482.421995 1397.271819 1219.360596 1322.248428 0.956986919 1.153350761 0.939617335 0.992311253 0.933894519 1.071245662 1.121137272 1.056739255 0.922187215 1 10.36877755 -7.315495897 24.99982566 1.043237784 1.000764083 0.053945378 0.075524083 996.7631514 460976.2187 0.027199695 0.023987908 4.84E-08 7.315495897 -0.042473701 RSIVPSS(ph)PQPQR ddPTM_K562_Paclitaxel_30min_R1 1 RSIVPSSPQPQR 12 1 A0A1X7SBY3;H0Y860;Q9P246;Q9P246-2;H7C5K2;H7C5C6;H7C5A5;Q9P246-3 A0A1X7SBY3 STIM2 Stromal interaction molecule 2 1 RSIVPS(0.209)S(0.791)PQPQR 88.706 0.011955 10119000 994.33 934.95 791.46 918.92 792 728.12 730.41 1036.7 1020 1215.2 TRUE FALSE 1008.253688 1037.031003 591.6461343 859.9845841 899.8838087 857.2418587 869.0014845 948.6258641 1117.975557 967.541573 1.042077897 1.071820614 0.611494277 0.888834762 0.930072499 0.886000026 0.898154156 0.98044972 1.155480642 1 9.918179842 -8.515890678 4.144569839 1.078466188 0.900266243 0.245352143 0.121105549 0.294992571 11.97693811 0.085791853 0.033131415 3.05E-09 8.515890678 -0.178199944 RSMPS(ph)MGYMTHT(ph)VS(ph)APS(ph)LHGK ddPTM_K562_Paclitaxel_30min_R1 1 RSMPSMGYMTHTVSAPSLHGK 21 1 A0A1B0GTN9;A0A1B0GUN0;H0YDE2;E9PKC0;Q6IQ23-3;Q6IQ23;Q6IQ23-2 A0A1B0GTN9 PLEKHA7 Pleckstrin homology domain-containing family A member 7 4 RS(0.048)MPS(0.509)MGY(0.437)MT(0.121)HT(0.975)VS(0.918)APS(0.993)LHGK 50.493 0.021011 79295000 1430.7 1602 1616 1769.2 1724.5 1693.8 1425.1 1839.6 1509.1 2198.1 TRUE FALSE 1450.734214 1776.911778 1208.020814 1655.731431 1959.406096 1994.171648 1695.505285 1683.314498 1654.055798 1750.126013 0.82893129 1.015305049 0.690247905 0.946064122 1.119580008 1.139444607 0.968790403 0.96182474 0.945106687 1 10.77324309 -6.520213994 24.97408391 1.024542887 0.854589146 0.412839416 0.094702059 107.5721566 1008173.563 0.028630356 0.037646151 3.02E-07 6.520213994 -0.169953741 RSNS(ph)APLIHGLSDTSPVFQAEAPSAR ddPTM_K562_Paclitaxel_30min_R1 1 RSNSAPLIHGLSDTSPVFQAEAPSAR 26 1 Q96E09 Q96E09 FAM122A Protein FAM122A 1 RS(0.442)NS(0.557)APLIHGLSDT(0.001)SPVFQAEAPSAR 80.593 6.16E-05 71918000 348.24 521.41 667.59 516.12 399.4 365.12 499.12 703.7 434.57 591.51 TRUE FALSE 353.1164344 578.3393071 499.0486479 483.0183733 453.8050419 429.8689055 593.8254144 643.9162926 476.3123902 470.9599373 0.749780197 1.22800107 1.059641401 1.025603953 0.963574618 0.912750473 1.260883076 1.367242183 1.011364986 1 8.879460531 -7.765404933 24.99802457 1.190476084 1.004312552 0.216450842 0.152625836 144.843605 913049.7245 0.060944671 0.042805626 1.72E-08 7.765404933 -0.186163532 RSNS(ph)TTQVSQPR ddPTM_K562_Paclitaxel_30min_R1 1 RSNSTTQVSQPR 12 1 I3L2J8;Q9UPN4-3;Q9UPN4-2;Q9UPN4 I3L2J8 CEP131 Centrosomal protein of 131 kDa 1 RS(0.004)NS(0.995)T(0.001)TQVSQPR 106.6 0.0042823 842940 0 0 0 158.63 0 0 130.48 133.63 132.24 0 TRUE FALSE 0 0 0 148.4561818 0 0 155.2378988 122.2772974 144.9422429 0 0 RSNT(ph)LDIMDGR ddPTM_K562_Paclitaxel_30min_R1 2 RSNTLDIMDGR 11 1 H0Y9X0;A0A286YEZ9;A0A2C9F2R7;O94915 H0Y9X0 FRYL Protein furry homolog-like 1 RS(0.041)NT(0.959)LDIMDGR;RS(0.237)NT(0.763)LDIMDGR 104.9 0.0079644 64356000 3385.8 3182.4 3939.7 3346.8 2984.92 2630.46 2708.98 3198.9 3312.5 3578.8 TRUE FALSE 3433.211646 3529.865194 2945.074009 3132.151228 3391.516639 3096.935148 3222.994813 2927.133478 3630.680426 2849.438596 1.204873006 1.238793213 1.033562897 1.099216959 1.190240297 1.086858005 1.131098181 1.027266733 1.274173948 1 11.47646199 RSNVSSPATPTASSSSST(ph)TPTR ddPTM_K562_Paclitaxel_30min_R1 3 RSNVSSPATPTASSSSSTTPTR 22 1 A6NNK5;Q12888;Q12888-3;Q12888-2;H7BZY0 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 RSNVSSPATPTASSS(0.002)S(0.01)S(0.01)T(0.417)T(0.417)PT(0.143)R;RSNVSSPATPT(0.001)AS(0.025)S(0.061)S(0.154)S(0.154)S(0.061)T(0.227)T(0.227)PT(0.09)R;RSNVSSPATPTASSSS(0.002)S(0.028)T(0.471)T(0.471)PT(0.028)R 151.28 6.10E-18 15675700 2018.8 1762.22 2450.21 2328.19 1901.77 1529.16 1731.27 2010.97 1774.24 2442.12 TRUE FALSE 2047.069429 1954.625139 1831.624182 2178.870314 2160.823271 1800.335056 2059.769445 1840.125546 1944.66368 1944.414603 1.05279472 1.005251213 0.941992607 1.120579073 1.111297594 0.92590081 1.059326257 0.946364805 1.000128098 1 10.92512016 -7.266041373 24.99767711 0.98755319 1.042420472 0.210936328 0.057783811 757.1941436 4113006.055 0.020890344 0.01907026 5.42E-08 7.266041373 0.054867282 RSNVSSPATPTASSSSSTT(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 1 RSNVSSPATPTASSSSSTTPTR 22 1 A6NNK5;Q12888;Q12888-3;Q12888-2;H7BZY0 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 RSNVSSPATPTASSS(0.001)S(0.023)S(0.07)T(0.21)T(0.633)PT(0.062)R 180.13 1.38E-22 6974700 1919.1 1645.4 2024.9 2173.4 1802.5 1672 1394.4 1597.3 1712.6 2159.7 TRUE FALSE 1945.973321 1825.050336 1513.688951 2034.007852 2048.031017 1968.505724 1658.980121 1461.599395 1877.102882 1719.551955 1.131674629 1.06135225 0.880281022 1.182870832 1.19102596 1.144778277 0.964774642 0.849988505 1.091623244 1 10.74781699 -7.775826735 24.48636306 0.964095566 1.09506722 0.262352719 0.099283424 265.450545 451774.8013 0.043771371 0.029675095 1.68E-08 7.775826735 0.130971654 RSPQQTVPYVVPLS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 RSPQQTVPYVVPLSPK 16 1 Q9UQR0;H0Y6S1;B4DRC2 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 1 RSPQQTVPYVVPLS(1)PK;RSPQQTVPYVVPLS(1)PK 118.21 0.00026762 39284000 8098.4 6779.4 13939.7 8931.7 7621.1 6878.1 7203.7 9269.3 6050.5 11592.2 TRUE FALSE 8211.802586 7519.597818 10420.45033 8358.860739 8659.222846 8097.834462 8570.564469 8481.815108 6631.677559 9229.703277 0.88971469 0.814717179 1.129012496 0.905647829 0.938190816 0.877366717 0.928585049 0.918969424 0.718514708 1 13.17206855 -8.560794444 24.99989612 0.845752181 0.927221374 0.063611693 0.098913325 390.9238433 257750.997 0.064173688 0.024255503 2.75E-09 8.560794444 0.081469194 RSQS(ph)DCGELGDFR ddPTM_K562_Paclitaxel_30min_R1 2 RSQSDCGELGDFR 13 1 Q6JBY9;B7ZKW8;F6T4W9 Q6JBY9 RCSD1 CapZ-interacting protein 1 RS(0.026)QS(0.974)DCGELGDFR;RS(0.048)QS(0.952)DCGELGDFR 114.29 0.0069137 35118000 2093.63 2395 2999.61 2448 1985.02 2458.7 1734.79 2562.1 2590.5 2814 TRUE FALSE 2122.947279 2656.494199 2242.321357 2290.996237 2255.413331 2894.715923 2063.957346 2344.433613 2839.3291 2240.505255 0.947530596 1.185667471 1.000810577 1.022535534 1.00665389 1.291992472 0.921201743 1.046386125 1.267271787 1 11.1296084 RSRS(ph)GS(ph)QGRT(ph)DS(ph)VEK ddPTM_K562_Paclitaxel_30min_R1 1 RSRSGSQGRTDSVEK 15 3 Q5VTL8;A0A0A0MRN0 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 4 RS(0.077)RS(0.944)GS(0.979)QGRT(1)DS(1)VEK 47.64 0.030819 0 0 68.348 0 0 176.19 0 0 0 0 142.74 TRUE FALSE 0 75.81046578 0 0 200.1900609 0 0 0 0 113.6495096 0 0.667054931 0 0 1.761468761 0 0 0 0 1 6.828447649 -11.37576806 3.232104664 1.006822368 0.285708669 0.141613783 0.538024064 336038390 454647006.4 21635772.51 0.137147263 4.21E-12 11.37576806 -0.721113699 RSS(ph)ADFGLLAR ddPTM_K562_Paclitaxel_30min_R1 4 RSSADFGLLAR 11 1 A0A1C7CYX0 A0A1C7CYX0 1 RS(0.04)S(0.96)ADFGLLAR;RS(0.341)S(0.659)ADFGLLAR;RS(0.091)S(0.909)ADFGLLAR;RS(0.022)S(0.978)ADFGLLAR 111.83 0.0030649 74381000 5174.09 6127.18 7369.14 6829.7 5734.74 7113.76 6838.29 8111.6 6885.5 9816 TRUE FALSE 5246.543223 6796.166233 5508.709467 6391.673611 6515.908678 8375.285454 8135.819829 7422.468949 7546.88304 7815.493812 0.671300285 0.869576049 0.70484471 0.817820827 0.833716824 1.071625883 1.040986024 0.949712088 0.965630992 1 12.93212132 -7.085842514 3.689107838 1.004071778 0.772542567 0.77686137 0.061229336 0.115109699 2.936203459 0.02066308 0.021168469 8.21E-08 7.085842514 -0.231529211 RSS(ph)AGSLESNVEGSIIS(ph)SPHMR ddPTM_K562_Paclitaxel_30min_R1 1 RSSAGSLESNVEGSIISSPHMR 22 1 A0A3B3IRZ4;Q6DN90-3 A0A3B3IRZ4 IQSEC1 IQ motif and SEC7 domain-containing protein 1 2 RS(0.128)S(0.41)AGS(0.375)LES(0.087)NVEGS(0.014)IIS(0.754)S(0.232)PHMR 91.592 0.0010715 12091000 534.92 599.03 787.19 715.09 569.78 628.35 567.76 644.55 850.54 883 TRUE FALSE 542.4105304 664.4341212 588.4541487 669.227328 647.3936825 739.77905 675.4894961 589.7914543 932.2381673 703.0441153 0.771517062 0.945081691 0.837008853 0.95189948 0.920843612 1.052251251 0.9608067 0.838911018 1.326002376 1 9.45747141 -6.290925711 0.363799889 1.068057191 0.749789715 0.317681716 0.120044965 4.01779823 0.730084085 0.118525987 0.527535072 5.12E-07 6.290925711 -0.318267476 RSS(ph)DDAGPGS(ph)WK ddPTM_K562_Paclitaxel_30min_R1 2 RSSDDAGPGSWK 12 1 Q8ND23-2;Q8ND23 Q8ND23-2 LRRC16B Leucine-rich repeat-containing protein 16B 2 RS(0.109)S(0.891)DDAGPGS(1)WK;RS(0.112)S(0.888)DDAGPGS(1)WK 86.214 0.025877 116402000 0 0 120.97 131.37 57.178 0 0 65.291 0 0 TRUE FALSE 0 0 90.42962736 122.9445162 64.96661163 0 0 59.74412202 0 0 0 RSS(ph)DSWEVWGSASTNR ddPTM_K562_Paclitaxel_30min_R1 2 RSSDSWEVWGSASTNR 16 1 F8VWH9;Q8N6T3-5;Q8N6T3;Q8N6T3-2;E5RHH7;Q8N6T3-4 F8VWH9 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 RS(0.005)S(0.941)DS(0.054)WEVWGSASTNR;RS(0.043)S(0.719)DS(0.238)WEVWGSASTNR 131.45 1.08E-06 82468000 3121.1 3464.6 4202.3 3999.3 3124.7 3250.1 2912.6 3581.8 3680.2 4654.5 TRUE FALSE 3164.805029 3842.876745 3141.377392 3742.802798 3550.337042 3826.459601 3465.250645 3277.503733 4033.699654 3705.910345 0.853988557 1.036958908 0.847666862 1.009955031 0.958020219 1.032528919 0.935060572 0.884399089 1.088450415 1 11.85561226 -5.237208195 23.44012653 0.970210957 0.853988235 0.213814932 0.069678737 4838.782637 4680647.791 0.016325102 0.904052411 5.79E-06 5.237208195 -0.116222722 RSS(ph)EEVDGQHPAQEEVPESPQTSGPEAENR ddPTM_K562_Paclitaxel_30min_R1 1 RSSEEVDGQHPAQEEVPESPQTSGPEAENR 30 1 Q6JBY9;B7ZKW8 Q6JBY9 RCSD1 CapZ-interacting protein 1 RS(0.274)S(0.726)EEVDGQHPAQEEVPESPQTSGPEAENR 97.134 4.27E-08 40120000 391.83 380.53 511.18 428.99 410.2 352.69 301.19 344.07 300.66 435.33 TRUE FALSE 397.3168289 422.0775523 382.1262868 401.4765015 466.0761847 415.2346195 358.3392302 314.8391059 329.5397364 346.609507 1.146295242 1.217732185 1.102469145 1.158296277 1.344672247 1.1979897 1.03384132 0.908339499 0.950752157 1 8.437167416 -7.89474823 3.478518964 0.94975378 1.196833165 0.753323072 0.063194968 0.121819681 2.868372888 0.030799557 0.019759254 1.27E-08 7.89474823 0.247079385 RSS(ph)ITEPEGPNGPNIQK ddPTM_K562_Paclitaxel_30min_R1 4 RSSITEPEGPNGPNIQK 17 1 Q13625-2;Q13625;Q13625-3 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 RS(0.029)S(0.942)IT(0.029)EPEGPNGPNIQK;RS(0.051)S(0.88)IT(0.069)EPEGPNGPNIQK;RS(0.077)S(0.748)IT(0.175)EPEGPNGPNIQK;RS(0.303)S(0.695)IT(0.002)EPEGPNGPNIQK 189.33 3.95E-11 214960000 6768.6 5554.8 10162.9 6782.2 4541.04 4251.37 4352.43 6119.2 6302.6 7401.3 TRUE FALSE 6863.381283 6161.291849 7597.150202 6347.220048 5159.606528 5005.290777 5178.280871 5599.335765 6907.992891 5892.910997 1.164684362 1.045543001 1.289201586 1.077094165 0.875561591 0.849374915 0.878730541 0.950181628 1.172254747 1 12.52476476 -6.568340043 5.773477697 0.944179625 1.159205405 0.470022422 0.101567928 0.165579482 13.09399882 0.031258808 0.041019386 2.70E-07 6.568340043 0.21502578 RSS(ph)LPLDHGSPAQENPESEK ddPTM_K562_Paclitaxel_30min_R1 2 RSSLPLDHGSPAQENPESEK 20 1 Q5VZ89-5;Q5VZ89-3;Q5VZ89;Q5VZ89-7;X6RAE7;A0A0A0MRX3;X6R5W5 Q5VZ89-5 DENND4C DENN domain-containing protein 4C 1 RS(0.356)S(0.528)LPLDHGS(0.116)PAQENPESEK;RS(0.049)S(0.951)LPLDHGSPAQENPESEK 129.08 1.71E-07 19243600 2809.2 2432.3 4773.6 3324.7 2959.5 2179.59 2545.88 4160.9 2617.98 4961.2 TRUE FALSE 2848.537467 2697.86674 3568.445641 3111.468623 3362.634005 2566.109684 3028.94744 3807.405573 2869.448676 3950.104717 0.721129608 0.682986132 0.903380011 0.787692693 0.85127718 0.649630799 0.766801808 0.963874592 0.726423445 1 11.94767518 -14.99999999 0.180430134 1.880411773 0.742953587 0.33933265 0.092346402 160.1273825 1.542230652 50.40865888 0.290726062 1.00E-15 14.99999999 -1.137458186 RSS(ph)LSPPS(ph)SAYER ddPTM_K562_Paclitaxel_30min_R1 1 RSSLSPPSSAYER 13 1 Q9BYW2 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 2 RS(0.03)S(0.97)LS(0.44)PPS(0.55)S(0.01)AYER 108.06 0.0057733 26855000 2849.4 2416.6 3724.4 3172.3 2330.9 2383.8 2485.7 2904 3132.6 3494 TRUE FALSE 2889.300391 2680.45256 2784.129157 2968.842877 2648.408042 2806.53346 2957.348599 2657.287074 3433.500227 2781.920882 1.038599052 0.963525806 1.000793795 1.0671917 0.95200696 1.008847332 1.063059923 0.955198651 1.234219222 1 11.44186567 -8.737683898 24.99995804 1.117109963 1.00676984 0.31499292 0.065445005 217.0601206 228432.641 0.040475887 0.01528006 1.83E-09 8.737683898 -0.110340122 RSS(ph)SFGNFDR ddPTM_K562_Paclitaxel_30min_R1 2 RSSSFGNFDR 10 1 Q9NSI8 Q9NSI8 SAMSN1 SAM domain-containing protein SAMSN-1 1 RS(0.077)S(0.664)S(0.259)FGNFDR;RS(0.057)S(0.471)S(0.471)FGNFDR 129.76 0.0018061 976860000 7162.6 7898.5 9609 8245.4 6777.2 7514.9 8177.1 9251 7666.6 9752.8 TRUE FALSE 7262.898499 8760.884941 7183.089107 7716.576949 7700.369379 8847.562001 9728.662038 8465.069807 8403.011185 7765.174007 0.935316902 1.128227768 0.92503904 0.993741665 0.991654453 1.13939005 1.252858214 1.090132662 1.082140745 1 12.92280254 -7.259930628 24.48778576 1.127284747 0.998274881 0.353365019 0.078622026 109.4761851 1776860.941 0.026381317 0.025061044 5.50E-08 7.259930628 -0.129009866 RSS(ph)TSSEPTPTVK ddPTM_K562_Paclitaxel_30min_R1 2 RSSTSSEPTPTVK 13 1 F8WAN1;A0A494C1J1;Q69YQ0-2;Q69YQ0 F8WAN1 SPECC1L-ADORA2A;SPECC1L Cytospin-A 1 RS(0.179)S(0.581)T(0.179)S(0.056)S(0.006)EPTPTVK;RS(0.154)S(0.352)T(0.352)S(0.12)S(0.023)EPTPTVK 86.772 0.012827 19117800 7450.1 7446.2 13142.9 9686 8107.6 7254.5 7024 10957.4 9629.9 12465.8 TRUE FALSE 7554.424386 8259.201297 9824.812346 9064.783313 9211.992383 8540.983717 8356.767332 10026.50048 10554.89492 9925.263117 0.761130894 0.832139279 0.989879284 0.913304081 0.928135836 0.860529702 0.84196935 1.010199967 1.063437291 1 13.27688963 -2 0.202908838 1.010699538 3.83E-12 0.460387451 0.06679813 58.43441551 0.711745654 0.13462141 18.86768359 0.01 2 -1.010699538 RSSAWAEGGS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 RSSAWAEGGSPR 12 1 Q8N9B5-2;Q8N9B5 Q8N9B5-2 JMY Junction-mediating and -regulatory protein 1 RSSAWAEGGS(1)PR 74.296 0.027516 10448000 670.03 681.46 916.08 877.41 686.25 800.51 743.05 736.77 632.13 997.27 TRUE FALSE 679.4124872 755.8641073 684.8042741 821.1368497 779.7288683 942.4692088 884.0398585 674.1767897 692.8489109 794.0258266 0.855655401 0.951938945 0.862445844 1.034143755 0.981994341 1.18695032 1.113364111 0.849061538 0.872577299 1 9.633042123 -6.264463832 24.87018742 1.010235185 0.89620595 0.227344274 0.097033313 412.8767575 3395110.626 0.030052311 0.046770896 5.44E-07 6.264463832 -0.114029235 RSSEEVDGQHPAQEEVPES(ph)PQTSGPEAENR ddPTM_K562_Paclitaxel_30min_R1 3 RSSEEVDGQHPAQEEVPESPQTSGPEAENR 30 1 Q6JBY9;B7ZKW8 Q6JBY9 RCSD1 CapZ-interacting protein 1 RSSEEVDGQHPAQEEVPES(0.954)PQT(0.034)S(0.013)GPEAENR;RSSEEVDGQHPAQEEVPES(0.387)PQT(0.257)S(0.356)GPEAENR;RSSEEVDGQHPAQEEVPES(0.962)PQT(0.028)S(0.01)GPEAENR 102.56 1.48E-11 70231000 3213.48 2658.66 4004.86 3343.95 2699.99 2821.34 2981.53 3719.97 3092.17 3961.73 TRUE FALSE 3258.478634 2948.94149 2993.783562 3129.484014 3067.774349 3321.665035 3547.259753 3403.935329 3389.186745 3154.327251 1.033018573 0.934887618 0.949103667 0.992124077 0.972560583 1.053050229 1.124569352 1.079131954 1.074456286 1 11.62311663 -7.332971093 3.852080873 1.077437464 0.972938994 0.582341279 0.037871335 0.150590002 4.363710989 0.013430158 0.011900407 4.65E-08 7.332971093 -0.10449847 RSSIRS(ph)VDMEEMGT(ph)GRAT(ph)DYVFR ddPTM_K562_Paclitaxel_30min_R1 1 RSSIRSVDMEEMGTGRATDYVFR 23 3 O43147-5;O43147;O43147-2 O43147-5 SGSM2 Small G protein signaling modulator 2 3 RS(0.269)S(0.303)IRS(0.436)VDMEEMGT(0.959)GRAT(0.822)DY(0.211)VFR 60.382 0.0072386 18505000 535.49 580.28 545.53 632.33 467.79 444.34 618.72 575.46 526.6 452.14 TRUE FALSE 542.9885121 643.6369328 407.8042045 591.775184 531.5109178 523.1374602 736.1188901 526.5710811 577.1822829 359.9936198 1.508328154 1.787912056 1.132809533 1.643849089 1.476445383 1.453185366 2.044810934 1.462723371 1.603312534 1 8.491827528 RSSIT(ph)EPEGPNGPNIQK ddPTM_K562_Paclitaxel_30min_R1 1 RSSITEPEGPNGPNIQK 17 1 Q13625-2;Q13625;Q13625-3 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 RS(0.107)S(0.319)IT(0.574)EPEGPNGPNIQK 120.79 0.00016611 22161000 1199.2 1018.2 1597.6 1134 849.38 876.37 687.13 1144.1 947.02 1353.8 TRUE FALSE 1215.9925 1129.370519 1194.266121 1061.270316 965.0799361 1031.781915 817.5093304 1046.901564 1037.985502 1077.894817 1.128117958 1.047755775 1.107961651 0.98457688 0.895337765 0.957219479 0.758431451 0.971246496 0.96297476 1 10.07400069 -6.454060613 3.140618836 0.916419903 1.090061416 0.570103392 0.065714547 0.183303554 3.530987673 0.019630883 0.029695263 3.52E-07 6.454060613 0.173641513 RSSQPS(ph)PTAVPASDSPPTKQEVK ddPTM_K562_Paclitaxel_30min_R1 1 RSSQPSPTAVPASDSPPTKQEVK 23 2 Q3KQU3-2;Q3KQU3-4;Q3KQU3;E9PLH3;C9JIR3 Q3KQU3-2 MAP7D1 MAP7 domain-containing protein 1 1 RS(0.295)S(0.295)QPS(0.39)PT(0.019)AVPASDSPPTKQEVK 54.834 0.012699 5335600 2912.1 1918.3 5906.9 3087.4 2157.4 1649.8 1417.1 2453.2 2075.7 3715.2 TRUE FALSE 2952.878385 2127.746481 4415.630039 2889.387983 2451.274405 1942.368866 1685.987327 2244.785348 2275.080259 2958.040201 0.998254988 0.719309521 1.49275525 0.976791317 0.828681911 0.656640456 0.569967686 0.758875876 0.769117424 1 11.53042594 -6.807174883 3.263032631 0.727555687 1.060687538 0.318865617 0.204597437 0.277698281 6.050531621 0.066266219 0.079961666 1.56E-07 6.807174883 0.333131851 RSSS(ph)FGNFDR ddPTM_K562_Paclitaxel_30min_R1 1 RSSSFGNFDR 10 1 Q9NSI8 Q9NSI8 SAMSN1 SAM domain-containing protein SAMSN-1 1 RS(0.002)S(0.225)S(0.772)FGNFDR 75.89 0.026624 36128000 1245.7 1069.7 1364.2 1199.3 841.68 1070.6 1310.4 1345.3 979.64 1686.4 TRUE FALSE 1263.143643 1186.493463 1019.790838 1122.382266 956.3310658 1260.455878 1559.041559 1231.008368 1073.738799 1342.710754 0.940741436 0.883655292 0.759501504 0.835907706 0.712239075 0.938739691 1.161114972 0.916808303 0.799679898 1 10.39093284 -7.502870499 24.58510888 0.974962305 0.826308897 0.314705141 0.101654422 775.2211094 952554.4558 0.037789038 0.032881214 3.14E-08 7.502870499 -0.148653408 RSSVDRY(ph)FSADHCSSVDHR ddPTM_K562_Paclitaxel_30min_R1 1 RSSVDRYFSADHCSSVDHR 19 2 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 RS(0.299)S(0.299)VDRY(0.338)FS(0.063)ADHCSSVDHR 55.864 0.022939 7212800 728.09 976.5 1075.1 978.13 1027.9 939.66 572.53 933.46 1400.4 929.81 TRUE FALSE 738.2855063 1083.117572 803.6777083 915.3971197 1167.917382 1106.295508 681.1645787 854.1567465 1534.914677 740.3142116 0.99725967 1.463051168 1.085590005 1.236498105 1.577596869 1.494359409 0.920101989 1.153775969 2.073328666 1 9.531993914 -6.545930425 24.78461365 1.365446433 1.20190335 0.064919174 0.326039382 724.9650264 779460.3716 0.096213895 0.12421936 2.84E-07 6.545930425 -0.163543083 RSTAPSAAASASASAAAS(ph)SPAGGGAEALELLEHCGVCR ddPTM_K562_Paclitaxel_30min_R1 2 RSTAPSAAASASASAAASSPAGGGAEALELLEHCGVCR 38 1 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 RSTAPSAAASASASAAAS(0.5)S(0.5)PAGGGAEALELLEHCGVCR;RSTAPSAAASAS(0.001)AS(0.016)AAAS(0.492)S(0.492)PAGGGAEALELLEHCGVCR 104.57 3.15E-18 449460000 3441.7 3360.7 4497.4 3210.4 3264.3 3423 3040.2 3757.8 4158.7 4027.3 TRUE FALSE 3489.894419 3727.632591 3361.975747 3004.499313 3708.952925 4030.020989 3617.062079 3438.551435 4558.161717 3206.534049 1.088369674 1.162511464 1.048476547 0.936992799 1.156685963 1.25681528 1.128028589 1.072357686 1.421522942 1 11.64679901 -6.976281236 24.96319816 1.180558977 1.063357346 0.183974815 0.117300364 389.2826897 409705.0227 0.03565529 0.040427314 1.06E-07 6.976281236 -0.11720163 RSVRKNHMY(ph)S(ph)CR ddPTM_K562_Paclitaxel_30min_R1 1 RSVRKNHMYSCR 12 3 B9VVT8;A0A087WXV4;P41235-7;P41235-3;P41235-6;P41235-5;P41235-2;P41235;P41235-4 B9VVT8 HNF4alpha;HNF4A Hepatocyte nuclear factor 4-alpha 2 RSVRKNHMY(1)S(1)CR 80.17 0.013381 0 1211.5 1055.6 1596.7 1405.4 1272.9 1182.7 1133.6 1626.2 1185.6 1687 TRUE FALSE 1228.464738 1170.853978 1193.593337 1315.263934 1446.29053 1392.435239 1348.694682 1488.04416 1299.482177 1343.188474 0.914588505 0.871697458 0.888626846 0.97921026 1.076759188 1.036664077 1.004099356 1.107844646 0.967460786 1 10.39144604 -6.421693901 3.296911443 1.036202643 0.889490374 0.721379746 0.038857691 0.1194784 2.444385144 0.010877947 0.016681374 3.79E-07 6.421693901 -0.146712268 RSVS(ph)DNDIRKY(ph)EMFAQTLQQS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 RSVSDNDIRKYEMFAQTLQQSR 22 3 P55072 P55072 VCP Transitional endoplasmic reticulum ATPase 3 RS(0.066)VS(0.925)DNDIRKY(0.981)EMFAQT(0.033)LQQS(0.994)R 42.347 0.024561 19020000 0 0 0 0 0 0 0 0 0 144.37 TRUE FALSE 0 0 0 0 0 0 0 0 0 114.9473148 0 0 0 0 0 0 0 0 0 1 6.844828954 RT(ph)ATHTCDYAGCGKTY(ph)T(ph)KS(ph)S(ph)HLK ddPTM_K562_Paclitaxel_30min_R1 1 RTATHTCDYAGCGKTYTKSSHLK 23 3 A0A087X0S4;O43474-4;O43474-1;O43474 A0A087X0S4 KLF4 Krueppel-like factor 4 5 RT(0.478)AT(0.106)HT(0.409)CDY(0.121)AGCGKT(0.572)Y(0.867)T(0.642)KS(0.818)S(0.987)HLK 48.824 0.014193 41549000 1305.5 1380.3 1284 1506.5 1820.8 1665.8 1740.2 1642.6 1062.8 1433.8 TRUE FALSE 1323.781028 1531.005822 959.8383197 1409.879833 2068.823786 1961.206241 2070.393866 1503.050877 1164.886689 1141.590773 1.159593314 1.34111615 0.840790187 1.235013339 1.812228896 1.717959086 1.813604239 1.316628439 1.020406538 1 10.15682986 -6.537413806 24.64821757 1.497178066 1.120118187 0.196091576 0.297261604 286.2166088 485356.5774 0.091228171 0.117825975 2.90E-07 6.537413806 -0.377059879 RT(ph)ESVPSDINNPVDR ddPTM_K562_Paclitaxel_30min_R1 1 RTESVPSDINNPVDR 15 1 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 RT(0.639)ES(0.361)VPSDINNPVDR 109.37 0.0025679 69557000 964.28 835.54 1131.5 1052 730.93 1002.7 952.27 1225.9 1167.4 1121.6 TRUE FALSE 977.7828951 926.7670828 845.8388308 984.5294286 830.4950407 1180.514766 1132.958261 1121.752143 1279.533986 893.0173043 1.094920435 1.037792973 0.947169586 1.102475197 0.929987624 1.321939408 1.268685675 1.256137073 1.432821044 1 9.802544321 -7.267696067 24.99477305 1.272723279 1.023581954 0.511356984 0.113506369 382.1838118 1526777.296 0.036995929 0.033425761 5.40E-08 7.267696067 -0.249141325 RT(ph)FT(ph)FNSLS(ph)PGT(ph)DFLISIMT(ph)NKGLK ddPTM_K562_Paclitaxel_30min_R1 1 RTFTFNSLSPGTDFLISIMTNKGLK 25 2 F8VW52;F8W122;F8VXI2 F8VW52 PTPRQ 5 RT(0.954)FT(0.615)FNS(0.615)LS(0.907)PGT(0.907)DFLIS(0.255)IMT(0.745)NKGLK 43.24 0.027633 0 394.37 380.31 315.98 430.52 366.42 399.89 366.75 441.89 426 467.37 TRUE FALSE 399.8923967 421.8335319 236.206941 402.9083741 416.3326075 470.8048768 436.3388979 404.3486863 466.9192034 372.1197375 1.074633664 1.133596231 0.634760582 1.082738521 1.118813558 1.265197272 1.172576604 1.086609082 1.254755275 1 8.539623104 -6.511867204 24.23080604 1.155445067 0.948338906 0.28820061 0.14179104 437.9052857 963607.388 0.041015791 0.056832565 3.08E-07 6.511867204 -0.207106161 RT(ph)MSEVGGSVEDLIAK ddPTM_K562_Paclitaxel_30min_R1 1 RTMSEVGGSVEDLIAK 16 1 A0A1B0GW44;A0A1B0GVP3;A0A1B0GV23;A0A1B0GVD5;A0A1B0GWE8;P07339;F8WD96;C9JH19;A0A1B0GU92;A0A1B0GU03 A0A1B0GW44 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain 1 RT(0.495)MS(0.495)EVGGS(0.01)VEDLIAK 65.219 0.016906 48199000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 RT(ph)NSDSALHQSTMTPTQPESFSSGSQDVHQK ddPTM_K562_Paclitaxel_30min_R1 1 RTNSDSALHQSTMTPTQPESFSSGSQDVHQK 31 1 M0QXN6;M0QX46;Q6UUV9-3;Q6UUV9;Q6UUV9-2 M0QXN6 CRTC1 CREB-regulated transcription coactivator 1 1 RT(0.281)NS(0.222)DS(0.281)ALHQS(0.068)T(0.068)MT(0.068)PT(0.014)QPESFSSGSQDVHQK 74.13 3.98E-05 17974000 1135.6 944.71 1780.5 1092.2 1032.6 875.59 745.41 1297.3 915.54 1179.5 TRUE FALSE 1151.501904 1047.856633 1330.990754 1022.151181 1173.257602 1030.863593 886.8476562 1187.086268 1003.481708 939.1172526 1.226153497 1.115788928 1.417278567 1.088416998 1.249319613 1.097694233 0.944341778 1.264044787 1.068537187 1 9.875161485 -7.315159158 6.653445915 1.082465734 1.21727951 0.289884473 0.112792881 0.345166653 34.85102907 0.038896814 0.034417639 4.84E-08 7.315159158 0.134813775 RT(ph)NSTGGSSGSSVGGGSGK ddPTM_K562_Paclitaxel_30min_R1 1 RTNSTGGSSGSSVGGGSGK 19 1 K7EKH8;K7EIZ7;X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2 K7EKH8 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 RT(0.487)NS(0.189)T(0.314)GGS(0.009)S(0.001)GSSVGGGSGK 79.586 0.0088458 1522700 570.23 402.18 638.46 496.59 395.67 531.27 389.26 672.39 362.62 685.05 TRUE FALSE 578.2149793 446.0913725 477.2728766 464.7409401 449.5669527 625.4832751 463.1200529 615.2662726 397.4512712 545.436434 1.060095995 0.817861339 0.875029329 0.852053349 0.824233448 1.146757415 0.849081624 1.128025622 0.728684859 1 9.091267262 RT(ph)PSDDEEDNLFAPPK ddPTM_K562_Paclitaxel_30min_R1 1 RTPSDDEEDNLFAPPK 16 1 F8W7U3;E7ESD2;Q641Q2-2;Q641Q2;J3KP36;A0A0A0MR88;A0A096LPC5;Q9Y4E1-3;Q9Y4E1-6;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1 F8W7U3 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 RT(0.639)PS(0.361)DDEEDNLFAPPK 116.51 0.00068756 13132000 2903.6 2291 5177.9 3373 2807.5 2208.6 2080.2 3594.9 2508 4235.3 TRUE FALSE 2944.259358 2541.139128 3870.675106 3156.670877 3189.929031 2600.2642 2474.907091 3289.490806 2748.904606 3372.143535 0.87311211 0.753567902 1.147838182 0.936102169 0.945964784 0.771101281 0.733926971 0.975489558 0.81518019 1 11.71945023 -7.223619319 24.69542615 0.849781865 0.933736889 0.081609026 0.118873417 1209.741382 789927.3118 0.040025118 0.040024144 5.98E-08 7.223619319 0.083955024 RT(ph)S(ph)VPS(ph)PEQNTIAT(ph)PATLHILQK ddPTM_K562_Paclitaxel_30min_R1 1 RTSVPSPEQNTIATPATLHILQK 23 1 A0A0A0MS48;Q8TEH3-5;Q8TEH3-2 A0A0A0MS48 DENND1A DENN domain-containing protein 1A 4 RT(0.999)S(0.998)VPS(0.998)PEQNT(0.199)IAT(0.734)PAT(0.072)LHILQK 40.384 0.028918 279600000 410.91 538.25 506.56 630.2 415.38 584.49 620.52 721.06 625.92 690.56 TRUE FALSE 416.6640078 597.0179552 378.6726629 589.7817927 471.9617884 688.1410949 738.2604307 659.8014523 686.0424127 549.8234929 0.757814122 1.08583566 0.688716775 1.072674777 0.858387818 1.251567282 1.342722601 1.200024118 1.247750272 1 9.102824742 -7.263724437 24.93774315 1.229308734 0.902084142 0.554324484 0.14080233 140.1516402 1529522.179 0.045159278 0.04175075 5.45E-08 7.263724437 -0.327224592 RT(ph)SLPCIPR ddPTM_K562_Paclitaxel_30min_R1 1 RTSLPCIPR 9 1 Q14432 Q14432 PDE3A "cGMP-inhibited 3,5-cyclic phosphodiesterase A" 1 RT(0.5)S(0.5)LPCIPR 87.184 0.025168 11576000 795.35 738.87 1243.6 777.34 639.63 788.96 879.38 687.39 451.69 987.86 TRUE FALSE 806.4873539 819.5423253 929.6377994 727.4848916 726.758435 928.8709785 1046.237764 628.9919289 495.0768427 786.5335898 1.025369246 1.041967356 1.181942909 0.924925396 0.924001778 1.180967972 1.330188282 0.799701293 0.629441449 1 9.619364569 -8.397893201 9.805508344 0.781695482 1.079937679 0.434774687 0.143826423 0.339007369 25.21277836 0.080582422 0.038606504 4.00E-09 8.397893201 0.298242197 RT(ph)SPQVLGSILK ddPTM_K562_Paclitaxel_30min_R1 1 RTSPQVLGSILK 12 1 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 RT(0.5)S(0.5)PQVLGSILK 144.15 0.0001422 168890000 8080.4 6765.8 12230 9177.9 6581.6 6193.3 6848.9 9936.8 7745.9 10760 TRUE FALSE 8193.55053 7504.512924 9142.385241 8589.270573 7478.125347 7291.594797 8148.443021 9092.606816 8489.928305 8567.106094 0.956396529 0.875968249 1.067149763 1.002587161 0.872888145 0.851115268 0.951131331 1.06133935 0.990991382 1 13.06459224 -8.1289076 6.649273269 1.018989778 0.937686052 0.243965141 0.06308227 0.378548496 18.73488307 0.032529629 0.01867215 7.43E-09 8.1289076 -0.081303726 RT(ph)SPSDGAMANYESTEVMGDGESAHDSPR ddPTM_K562_Paclitaxel_30min_R1 4 RTSPSDGAMANYESTEVMGDGESAHDSPR 29 1 Q14C86-4;Q14C86-2;Q14C86-6;F8W9S7;Q14C86-3 Q14C86-4 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 RT(0.293)S(0.293)PS(0.277)DGAMANY(0.089)ES(0.022)T(0.027)EVMGDGESAHDSPR;RT(0.333)S(0.333)PS(0.333)DGAMANYESTEVMGDGESAHDSPR;RT(0.727)S(0.137)PS(0.137)DGAMANYESTEVMGDGESAHDSPR;RT(0.333)S(0.333)PS(0.333)DGAMANYESTEVMGDGESAHDSPR 161.58 1.78E-35 135736600 2827.24 2708.32 3526.71 3438.13 2959.84 2868.39 3018.73 3838.28 2219.41 3698.14 TRUE FALSE 2866.830083 3004.023537 2636.348443 3217.62373 3363.020319 3377.058692 3591.518259 3512.194156 2432.594247 2944.457038 0.973636241 1.020230045 0.895359793 1.092773197 1.142152959 1.146920688 1.219755701 1.192815555 0.82616055 1 11.52378591 -6.37048618 6.816958593 1.107849697 0.969302692 0.20094811 0.110262975 0.356726162 19.48941914 0.031248837 0.04651736 4.26E-07 6.37048618 -0.138547006 RT(ph)SSEELRDATSLLAAGEGGLLDEVEPLRPDELER ddPTM_K562_Paclitaxel_30min_R1 1 RTSSEELRDATSLLAAGEGGLLDEVEPLRPDELER 35 3 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 RT(0.332)S(0.332)S(0.332)EELRDAT(0.002)S(0.002)LLAAGEGGLLDEVEPLRPDELER 62.052 0.00012893 50702000 204.16 172.59 155.19 127.32 0 0 122.58 124.22 156.78 184.4 TRUE FALSE 207.0188699 191.4339599 116.0103651 119.1542651 0 0 145.8389151 113.6667356 171.8394195 146.8191788 1.410026072 1.303875702 0.790158112 0.811571527 0 0 0.993323327 0.774195419 1.170415343 1 7.197896627 -8.581208615 2.461993385 1.079265194 0.725886991 0.071168917 0.443231739 0.922105613 10.42726089 0.429092011 0.136606744 2.62E-09 8.581208615 -0.353378203 RT(ph)SSTLDSEGTFNSYR ddPTM_K562_Paclitaxel_30min_R1 1 RTSSTLDSEGTFNSYR 16 1 Q92609;Q92609-2;C9JNM0;C9JED7;F2Z3C3;C9K0P2;C9J397;C9JWX0;C9JW04;C9JDR8 Q92609 TBC1D5 TBC1 domain family member 5 1 RT(0.372)S(0.372)S(0.242)T(0.013)LDSEGTFNSYR 109.55 0.0013906 13526000 685 758.85 1020 763.87 638.6 714.2 590.44 983.37 483.65 1254.3 TRUE FALSE 694.5921134 841.7038093 762.4883848 714.8787972 725.5881316 840.8533421 702.4729077 899.8265805 530.1067435 998.6729715 0.695515082 0.842822258 0.763501573 0.715828722 0.726552287 0.841970661 0.703406348 0.901022263 0.530811145 1 9.963868516 -11.06377952 4.354382974 1.000019413 0.754688092 0.374477838 0.097688827 132374214 211625740.9 36455.47222 0.022285884 8.63E-12 11.06377952 -0.245331321 RTAFYNEDDS(ph)EEEQR ddPTM_K562_Paclitaxel_30min_R1 1 RTAFYNEDDSEEEQR 15 1 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 RTAFYNEDDS(1)EEEQR 205.12 3.95E-120 0 2113.1 1569.6 2743.3 2003 1594.1 1482.8 1563 1597.2 1455.5 1769.6 TRUE FALSE 2142.689919 1740.974236 2050.719986 1874.536545 1811.243408 1745.75376 1859.571091 1461.507891 1595.307278 1408.954549 1.52076582 1.235649679 1.455490518 1.330445008 1.28552295 1.239041928 1.319823335 1.03729953 1.132263124 1 10.46040936 -8.04309877 0.4878557 0.987613203 1.411109551 0.70983422 0.085130637 0.498043308 0.268464866 0.082604955 0.064585547 9.06E-09 8.04309877 0.423496348 RTATYNGPPAS(ph)PSLSHEATPLSQTR ddPTM_K562_Paclitaxel_30min_R1 5 RTATYNGPPASPSLSHEATPLSQTR 25 1 J3KNR0;P27448-8;P27448-3;P27448-4;P27448-2;P27448;H0YIY6;P27448-6;P27448-7;A2SY06 J3KNR0 MARK3 MAP/microtubule affinity-regulating kinase 3 1 RTATYNGPPAS(0.975)PS(0.025)LSHEATPLSQTR;RTATYNGPPAS(0.969)PS(0.031)LSHEATPLSQTR;RTATYNGPPAS(1)PSLSHEATPLSQTR;RT(0.001)AT(0.001)Y(0.001)NGPPAS(0.991)PS(0.006)LS(0.001)HEATPLSQTR;RTATYNGPPAS(0.987)PS(0.011)LS(0.001)HEATPLSQTR 175.02 4.50E-28 101146000 3221.99 3228.58 3669.22 2979.47 2940.26 2845.05 2595.23 3296.49 2715.85 3529.93 TRUE FALSE 3267.107801 3581.087283 2742.880031 2788.38013 3340.773191 3349.579671 3087.661344 3016.432598 2976.719527 2810.528328 1.162453254 1.27416872 0.975930398 0.99211956 1.188663767 1.191797157 1.09860531 1.073261766 1.059131658 1 11.45662564 -9.185524325 0.01635809 9.36E-06 2.137198905 0.185321485 0.085587593 1316.99122 11.95249541 801.6468786 757.2332107 6.52E-10 9.185524325 2.137189543 RTDALTS(ph)SPGR ddPTM_K562_Paclitaxel_30min_R1 3 RTDALTSSPGR 11 1 P49736;F8WDM3;C9JZ21;C9J013 P49736 MCM2 DNA replication licensing factor MCM2 1 RTDALT(0.016)S(0.492)S(0.492)PGR;RTDALT(0.006)S(0.953)S(0.041)PGR;RTDALT(0.111)S(0.86)S(0.028)PGR 115.12 0.0025955 96345400 4625.6 4108.91 5580.3 4997.6 4462.09 4240.81 4484.8 4790.32 2761.54 5976.6 TRUE FALSE 4690.372671 4557.534689 4171.484249 4677.076304 5069.902202 4992.85811 5335.767388 4383.352416 3026.798256 4758.565639 0.985669428 0.957753877 0.876626396 0.982875232 1.065426556 1.049235944 1.121297423 0.921149932 0.636073659 1 12.21631106 -4.226444222 3.531249363 0.964255906 12.72293829 0.001471982 0.126898295 42066.78687 914.10351 0.034082445 3995539.505 5.94E-05 4.226444222 11.75868238 RTDALTSS(ph)PGR ddPTM_K562_Paclitaxel_30min_R1 2 RTDALTSSPGR 11 1 P49736;F8WDM3;C9JZ21;C9J013 P49736 MCM2 DNA replication licensing factor MCM2 1 RTDALT(0.001)S(0.024)S(0.976)PGR;RTDALT(0.003)S(0.236)S(0.761)PGR 101.45 0.0053164 76960700 1987.02 2292.64 3044.5 2675.56 2373.2 2268.4 2231.35 2335.19 1071.3 2805.62 TRUE FALSE 2014.84441 2542.958188 2275.878321 2503.961557 2696.470019 2670.66889 2654.737014 2136.801034 1174.203152 2233.833104 0.901967299 1.13838325 1.018822005 1.120925978 1.207104512 1.195554352 1.188422273 0.956562525 0.525644978 1 11.12530569 -8.527405944 24.57693612 0.755582727 1.112118366 0.506233955 0.137132232 79.45892043 431338.108 0.087641177 0.033423199 2.97E-09 8.527405944 0.356535639 RTDLCDHALHISHDEL ddPTM_K562_Paclitaxel_30min_R1 1 RTDLCDHALHISHDEL 16 1 Q9Y2B0;H0YI18 Q9Y2B0 CNPY2 Protein canopy homolog 2 0 75.462 0.0094915 13578000 925.69 1025.7 1116.6 1172.6 975.79 1040.2 1211.7 1643.5 1274.9 1522.7 FALSE TRUE 938.652516 1137.689395 834.7005201 1097.394684 1108.709118 1224.664865 1441.61375 1503.874417 1397.359841 1212.372904 0.77422756 0.938398896 0.688484968 0.905162661 0.914495131 1.010138762 1.189084435 1.240438822 1.15258254 1 10.2436178 -7.322200594 1.556074109 1.166436207 0.824245761 0.725935608 0.087844918 0.189529875 0.914745524 0.038572218 0.033400808 4.76E-08 7.322200594 -0.342190446 RTEARSS(ph)DEENGPPS(ph)SPDLDR ddPTM_K562_Paclitaxel_30min_R1 2 RTEARSSDEENGPPSSPDLDR 21 2 Q96B36-3;Q96B36;Q96B36-2 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 2 RT(0.004)EARS(0.456)S(0.536)DEENGPPS(0.542)S(0.461)PDLDR;RT(0.043)EARS(0.438)S(0.519)DEENGPPS(0.542)S(0.458)PDLDR 65.887 0.028679 62820000 2400.5 2094.06 2434.9 2662.6 2103.25 2135.64 1975.97 2426.37 2354.64 2183.71 TRUE FALSE 2434.114406 2322.696552 1820.179381 2491.832753 2389.748258 2514.365768 2350.899992 2220.234724 2580.813693 1738.668703 1.399987474 1.335905195 1.046881086 1.433184337 1.374470164 1.446144262 1.352126479 1.276973997 1.484361965 1 10.76376734 -11.26630065 4.825657038 0.999900763 1.34458207 0.448960309 0.116187628 0.000126098 1.92E-05 0.11434717 0.027725311 5.42E-12 11.26630065 0.344681308 RTES(ph)VPSDINNPVDR ddPTM_K562_Paclitaxel_30min_R1 2 RTESVPSDINNPVDR 15 1 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 RT(0.003)ES(0.667)VPS(0.33)DINNPVDR;RT(0.237)ES(0.763)VPSDINNPVDR 145.79 6.81E-06 117280000 4837.1 4795.2 5734.3 4297.6 4248.3 3652.8 4415 5117.9 4844.8 5774.7 TRUE FALSE 4904.834324 5318.756152 4286.605044 4021.971171 4826.990384 4300.572792 5252.723202 4683.10245 5310.164687 4597.81297 1.06677552 1.156801329 0.932313922 0.874757455 1.049844875 0.935351834 1.142439511 1.018550011 1.15493273 1 12.16673207 -7.763910074 24.99995524 1.080526386 1.002784203 0.155980217 0.08696553 136.0231531 1376327.618 0.036727312 0.026082793 1.72E-08 7.763910074 -0.077742183 RTFS(ph)LTEVR ddPTM_K562_Paclitaxel_30min_R1 1 RTFSLTEVR 9 1 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 RT(0.02)FS(0.583)LT(0.397)EVR 111.5 0.010938 43665000 1623.7 1303.2 1685.2 1310.2 948.64 1232.5 972.75 1379.7 1368.7 1458 TRUE FALSE 1646.43681 1445.487783 1259.750418 1226.169636 1077.860829 1451.06657 1157.324234 1262.485873 1500.169751 1160.8588 1.418292052 1.24518829 1.085188326 1.056260793 0.928502957 1.24999403 0.996955215 1.087544733 1.292293043 1 10.18097679 -5.473418749 2.284386781 1.085202413 1.4357253 0.497413295 0.105439551 0.326102446 2.72114769 0.027783726 0.190466655 3.36E-06 5.473418749 0.350522888 RTLDS(ph)DEERPRPAPPDWSHMR ddPTM_K562_Paclitaxel_30min_R1 1 RTLDSDEERPRPAPPDWSHMR 21 3 Q9BW71;Q9BW71-2 Q9BW71 HIRIP3 HIRA-interacting protein 3 1 RT(0.085)LDS(0.649)DEERPRPAPPDWS(0.266)HMR 44.483 0.024253 123900000 870.96 847.69 1055.9 1091.8 911.02 694.88 802.55 1055.4 1098 1203.6 TRUE FALSE 883.1561271 940.2436609 789.3249858 1021.776835 1035.116348 818.1072114 954.8296729 965.7371824 1203.467806 958.3056593 0.921580832 0.981152153 0.823667249 1.066232704 1.080152598 0.853701743 0.996372779 1.007754857 1.255828758 1 9.904342078 -8.543131491 21.64059644 1.129207847 0.963486192 0.322716807 0.095732468 59.29908274 63356.299 0.062899433 0.023788413 2.86E-09 8.543131491 -0.165721655 RTMEIY(ph)S(ph)KTT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 RTMEIYSKTTR 11 2 H7C5P4;A0A087WVY3;P35250-2;P35250 H7C5P4 RFC2 Replication factor C subunit 2 3 RT(0.415)MEIY(0.769)S(0.814)KT(0.01)T(0.992)R 53.557 0.030548 0 58.591 0 0 0 0 0 0 133.62 0 56.528 TRUE FALSE 59.41145477 0 0 0 0 0 0 122.268147 0 45.00756257 1.320032709 0 0 0 0 0 0 2.716613386 0 1 5.492095531 RTNPFGET(ph)EDESFPEAEVKTDST(ph)TEVIYEAMR ddPTM_K562_Paclitaxel_30min_R1 1 RTNPFGETEDESFPEAEVKTDSTTEVIYEAMR 32 2 H0YH86 H0YH86 APPL2 2 RT(0.005)NPFGET(0.791)EDES(0.196)FPEAEVKT(0.081)DS(0.081)T(0.288)T(0.288)EVIY(0.272)EAMR 43.801 0.010542 220680000 1043.1 721.05 1110.6 1124.5 770.76 911.2 1022.8 1149.1 842.51 1508.7 TRUE FALSE 1057.706618 799.7766774 830.2152943 1052.379603 875.7505611 1072.788526 1216.870961 1051.476783 923.4368499 1201.226112 0.880522499 0.665800277 0.6911399 0.876087851 0.729047223 0.893077927 1.013024067 0.875336269 0.768745235 1 10.23029203 -7.31976073 6.395874106 0.909709126 0.764589921 0.378130792 0.09075092 0.26228985 22.89331776 0.032553801 0.028780272 4.79E-08 7.31976073 -0.145119205 RTNS(ph)TGGSSGSSVGGGSGK ddPTM_K562_Paclitaxel_30min_R1 3 RTNSTGGSSGSSVGGGSGK 19 1 K7EKH8;K7EIZ7;X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2 K7EKH8 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 RT(0.15)NS(0.419)T(0.419)GGS(0.01)S(0.001)GSSVGGGSGK;RT(0.142)NS(0.413)T(0.413)GGS(0.026)S(0.007)GSSVGGGSGK;RT(0.224)NS(0.383)T(0.383)GGS(0.007)S(0.003)GSSVGGGSGK 95.319 0.00071565 10272700 1726.43 1402.78 2319.5 1991.1 1378.34 1247.52 1152.09 1860.38 1269.91 1946.76 TRUE FALSE 1750.605346 1555.940264 1733.913538 1863.399758 1566.093243 1468.750156 1370.693063 1702.329107 1391.89053 1550.009243 1.129416069 1.003826442 1.118647224 1.202186223 1.010376712 0.947575095 0.884312832 1.098270294 0.897988535 1 10.5980611 -6.967758195 10.97300282 0.968040627 1.106170651 0.490179192 0.071209088 0.514262232 171.9885355 0.022125298 0.025047957 1.08E-07 6.967758195 0.138130024 RTPAPPEPGS(ph)PAPGEGPSGR ddPTM_K562_Paclitaxel_30min_R1 2 RTPAPPEPGSPAPGEGPSGR 20 1 P0C1Z6-2;P0C1Z6 P0C1Z6-2 TFPT TCF3 fusion partner 1 RTPAPPEPGS(1)PAPGEGPSGR;RTPAPPEPGS(1)PAPGEGPSGR 98.377 0.00048176 372320000 3951.8 3735 4602.6 4686.2 3877.3 3937.1 3329 4033.2 3736.4 4410.5 TRUE FALSE 4007.137392 4142.799931 3440.616706 4385.648107 4405.453903 4635.289405 3960.660371 3690.554486 4095.297915 3511.637679 1.141102175 1.179734446 0.979775541 1.248889694 1.25452974 1.319979403 1.127867033 1.050949677 1.166207419 1 11.77792828 -9.021842653 0.963497174 1.008857016 1.178025931 0.225018847 0.093375578 0.985119534 2.056787618 0.095739561 0.032509386 9.51E-10 9.021842653 0.169168915 RTPS(ph)DDEEDNLFAPPK ddPTM_K562_Paclitaxel_30min_R1 2 RTPSDDEEDNLFAPPK 16 1 F8W7U3;E7ESD2;Q641Q2-2;Q641Q2;J3KP36;A0A0A0MR88;A0A096LPC5;Q9Y4E1-3;Q9Y4E1-6;Q9Y4E1-2;Q9Y4E1-1;Q9Y4E1 F8W7U3 FAM21A;FAM21C WASH complex subunit FAM21A;WASH complex subunit FAM21C 1 RT(0.265)PS(0.735)DDEEDNLFAPPK;RT(0.236)PS(0.764)DDEEDNLFAPPK 103.99 0.0017485 10944000 4348.3 3629.3 8029.3 5207 3742.4 3120.1 3750.4 5470.6 3617.4 6568.4 TRUE FALSE 4409.189616 4025.559248 6002.20391 4873.046326 4252.178239 3673.405927 4462.018822 5005.838384 3964.867433 5229.756475 0.843096545 0.769741243 1.147702372 0.931792207 0.813073852 0.702404776 0.853198202 0.95718384 0.758136149 1 12.35252805 RTPS(ph)RAS(ph)LTRTPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 RTPSRASLTRTPSR 14 3 A8MUU9 A8MUU9 Putative uncharacterized protein ENSP00000383309 3 RT(0.249)PS(0.634)RAS(0.878)LT(0.239)RT(0.325)PS(0.674)R 65.528 0.028206 10730000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 RTS(ph)FYLPK ddPTM_K562_Paclitaxel_30min_R1 1 RTSFYLPK 8 1 Q9NS23-3;Q9NS23-4;Q9NS23-2;Q9NS23-5;Q9NS23 Q9NS23-3 RASSF1 Ras association domain-containing protein 1 1 RT(0.035)S(0.965)FYLPK 84.817 0.014452 7045400 3418.1 3065.7 4275.4 3529.7 2724 2364.7 2121.5 3322.6 2852.7 3544.5 TRUE FALSE 3465.963946 3400.423494 3196.022393 3303.32084 3095.054918 2784.046343 2524.04355 3040.324391 3126.714581 2822.128954 1.228138048 1.204914286 1.132486305 1.170506697 1.096709246 0.986505715 0.894375697 1.077315899 1.107927608 1 11.4625682 -6.947775951 2.587862253 1.011291162 1.184081919 0.657651175 0.057975968 0.192494313 2.616072935 0.021781416 0.024523689 1.13E-07 6.947775951 0.172790757 RTS(ph)PSDGAMANYESTEVMGDGESAHDSPR ddPTM_K562_Paclitaxel_30min_R1 1 RTSPSDGAMANYESTEVMGDGESAHDSPR 29 1 Q14C86-4;Q14C86-2;Q14C86-6;F8W9S7;Q14C86-3 Q14C86-4 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 RT(0.155)S(0.422)PS(0.422)DGAMANYESTEVMGDGESAHDSPR 108.38 8.00E-10 63849000 130.28 270.25 369.78 272.45 125.68 107.84 119.61 172.07 206.3 241.08 TRUE FALSE 132.1043219 299.7568089 276.4244656 254.9762764 142.7997438 126.9639099 142.3053731 157.4515795 226.1160368 191.9477637 0.688230586 1.561658251 1.440102559 1.32836284 0.743951068 0.661450321 0.74137552 0.82028348 1.178008185 1 7.584569942 -6.75759262 24.99913327 0.832915731 1.289773185 0.361671132 0.255484525 97.33446791 632547.636 0.076755392 0.095337363 1.75E-07 6.75759262 0.456857453 RTS(ph)PSSLPGR ddPTM_K562_Paclitaxel_30min_R1 1 RTSPSSLPGR 10 1 Q5SNT2;H0Y4R5 Q5SNT2 TMEM201 Transmembrane protein 201 1 RT(0.18)S(0.82)PSSLPGR 94.688 0.0081477 38734000 707.91 847.19 776.05 743.28 942.03 708.08 762.72 637.97 809.62 830.28 TRUE FALSE 717.8229241 939.6890692 580.1265794 695.6093476 1070.350435 833.6480461 907.4421383 583.7704664 887.3876185 661.0684802 1.085852594 1.421470086 0.877558977 1.052250059 1.619121871 1.261061556 1.37269007 0.883071095 1.342353546 1 9.368655918 -9.694020851 0.772600681 0.999540698 1.22175334 0.066177546 0.22808271 8.013724617 6.5306895 0.290257214 0.080727463 2.02E-10 9.694020851 0.222212641 RTS(ph)SEDNLYLAVLR ddPTM_K562_Paclitaxel_30min_R1 1 RTSSEDNLYLAVLR 14 1 Q15149-4 Q15149-4 PLEC Plectin 1 RT(0.044)S(0.478)S(0.478)EDNLYLAVLR 154.47 7.19E-05 16113000 804.88 813.2 1130.8 1135.6 809 882.68 978.76 1271.7 1143.3 1243.2 TRUE FALSE 816.1508033 901.9879261 845.3155544 1062.767699 919.1994965 1039.210905 1164.474601 1163.661147 1253.119073 989.8351576 0.824532042 0.911250645 0.853996292 1.073681502 0.928638965 1.049882798 1.176432855 1.175611048 1.265987638 1 9.951044475 -7.008584272 0.792114794 1.174867132 0.860025431 0.638030822 0.084860647 0.396671817 0.552296738 0.051067348 0.064776563 9.80E-08 7.008584272 -0.314841701 RTSS(ph)EDNLYLAVLR ddPTM_K562_Paclitaxel_30min_R1 2 RTSSEDNLYLAVLR 14 1 Q15149-4 Q15149-4 PLEC Plectin 1 RTS(0.066)S(0.934)EDNLYLAVLR;RT(0.007)S(0.25)S(0.743)EDNLYLAVLR 222.11 6.15E-26 29796000 2501.63 2279.59 3061.9 2600.63 2095.13 2241.95 1867.85 2299.27 2606.8 2554.39 TRUE FALSE 2536.660538 2528.483345 2288.885476 2433.837232 2380.522177 2639.528354 2222.264787 2103.932662 2857.194787 2033.803916 1.247249314 1.243228674 1.125420921 1.196692175 1.170477723 1.297828337 1.092664229 1.034481567 1.404852634 1 10.98996488 -11.28371244 3.695252619 0.99956336 1.194102363 0.262071021 0.100728949 10729650.42 6552853.179 35228.24759 0.023591886 5.20E-12 11.28371244 0.194539003 RTSS(ph)LDTLAAPYLAGHWPR ddPTM_K562_Paclitaxel_30min_R1 1 RTSSLDTLAAPYLAGHWPR 19 1 Q6P1L5-2;Q6P1L5 Q6P1L5-2 FAM117B Protein FAM117B 1 RT(0.271)S(0.271)S(0.458)LDTLAAPYLAGHWPR 119.46 4.43E-05 10370000 608.8 462.29 560.19 567 663.25 641.95 616.7 636.68 557.54 595.58 TRUE FALSE 617.3250783 512.7643856 418.7631062 530.6351578 753.5958789 755.7908191 733.7156056 582.59006 611.0942082 474.2004691 1.301823002 1.081324079 0.883092982 1.119010192 1.589192605 1.593821323 1.547268831 1.228573352 1.288683264 1 8.88935328 -6.645088189 7.318251394 1.404847452 1.074389565 0.31743867 0.196768245 0.24567714 14.75433654 0.059947864 0.077443837 2.26E-07 6.645088189 -0.330457887 RTSS(ph)PPSSPQHSPALR ddPTM_K562_Paclitaxel_30min_R1 1 RTSSPPSSPQHSPALR 16 1 Q13029-5;Q13029-3;Q13029-2;Q13029 Q13029-5 PRDM2 PR domain zinc finger protein 2 1 RT(0.21)S(0.21)S(0.578)PPS(0.002)SPQHSPALR 75.017 0.018884 3374200 203.61 0 119.16 183.36 162.37 167.8 113.94 133.09 119.69 104.48 TRUE FALSE 206.4611682 0 89.07658425 171.6001103 184.4875429 197.556974 135.5595202 121.7831738 131.1867593 83.18691865 2.481894648 0 1.070800382 2.062825659 2.217747044 2.374856254 1.629577371 1.463970246 1.577011884 1 6.378284774 -6.248370832 22.76399288 1.819338157 1.065808157 0.121758661 0.675294143 382.3509828 666007.8156 0.179840979 0.308377034 5.64E-07 6.248370832 -0.75353 RTSSEELRDAT(ph)SLLAAGEGGLLDEVEPLRPDELER ddPTM_K562_Paclitaxel_30min_R1 1 RTSSEELRDATSLLAAGEGGLLDEVEPLRPDELER 35 3 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 RT(0.186)S(0.186)S(0.186)EELRDAT(0.222)S(0.222)LLAAGEGGLLDEVEPLRPDELER 48.305 0.0036343 10431000 1035.8 823.06 975.81 683.33 491.7 625.14 567.41 602.36 797.59 1013.8 TRUE FALSE 1050.304396 912.9244742 729.4546968 639.5042723 558.6778645 735.9998016 675.0730854 551.1857582 874.2020832 807.1870035 1.301190915 1.130995011 0.903699754 0.792262846 0.69212941 0.91180829 0.836327992 0.682847662 1.083022991 1 9.656759136 -5.64005631 2.20693155 0.837842318 1.299031783 0.602528531 0.118420475 0.213995898 1.893422673 0.03119806 0.142289404 2.29E-06 5.64005631 0.461189465 RTSSLDT(ph)ITGPYLTGQWPR ddPTM_K562_Paclitaxel_30min_R1 1 RTSSLDTITGPYLTGQWPR 19 1 Q86VQ1;H7C2L5;H7C0Q2 Q86VQ1 GLCCI1 Glucocorticoid-induced transcript 1 protein 1 RT(0.044)S(0.012)S(0.373)LDT(0.544)IT(0.014)GPY(0.011)LT(0.003)GQWPR 82.543 0.017744 17105000 1192 1170.3 1266.4 1396.7 1072.2 1153.3 1211 1676 1327.4 1838 TRUE FALSE 1208.691678 1298.077312 946.6816574 1307.121913 1218.251792 1357.821562 1440.780928 1533.613339 1454.902701 1463.414591 0.825939337 0.887019522 0.646899152 0.8932 0.832472083 0.927844761 0.984533663 1.047969146 0.994183542 1 10.51512283 -7.420431738 1.359454001 1.018583045 0.804913104 0.665166604 0.06413496 0.254041339 0.950724398 0.032343052 0.025549727 3.80E-08 7.420431738 -0.213669941 RTST(ph)PVIMEGVQEETDTR ddPTM_K562_Paclitaxel_30min_R1 1 RTSTPVIMEGVQEETDTR 18 1 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 RT(0.03)S(0.054)T(0.915)PVIMEGVQEETDTR 110.34 0.00071368 7433000 497.35 510.91 648.17 661.97 626.78 599.5 598.44 695.24 569.14 819.38 TRUE FALSE 504.3144345 566.6928816 484.531467 619.5142071 712.1580475 705.8129076 711.9908659 636.1750224 623.80844 652.3899062 0.773026115 0.8686414 0.742702274 0.949607284 1.091614142 1.081888148 1.091357881 0.97514541 0.956189595 1 9.349590651 -6.463033198 4.343498324 1.036335323 0.804109603 0.795188146 0.053819078 0.100318128 3.808442183 0.016582997 0.024463051 3.44E-07 6.463033198 -0.23222572 RTSVPS(ph)PEQPQPYR ddPTM_K562_Paclitaxel_30min_R1 2 RTSVPSPEQPQPYR 14 1 Q8TEH3 Q8TEH3 DENND1A DENN domain-containing protein 1A 1 RTSVPS(1)PEQPQPYR;RTSVPS(1)PEQPQPYR 217.32 2.07E-18 15937700 3579 3134.9 4409.7 3706.2 3096.7 3229.9 2683.5 3552.4 3255.7 3513.9 TRUE FALSE 3629.117042 3477.178984 3296.416697 3468.50092 3518.522968 3802.677415 3192.680116 3250.601447 3568.424532 2797.765251 1.297148515 1.242841579 1.178232053 1.239739795 1.257619082 1.359183875 1.141153681 1.161856394 1.275455305 1 11.4500592 -14.18302499 0.273260006 4.92E-08 1.25425141 0.576942264 0.06179046 99.78660666 1.467147789 55.794694 0.078163859 6.56E-15 14.18302499 1.254251361 RTTS(ph)SSDLTTSSSSSGPR ddPTM_K562_Paclitaxel_30min_R1 1 RTTSSSDLTTSSSSSGPR 18 1 Q5QP82;A0A0A0MQT4 Q5QP82 DCAF10 DDB1- and CUL4-associated factor 10 1 RT(0.196)T(0.196)S(0.6)S(0.007)S(0.002)DLTTSSSSSGPR 108.25 0.00046255 5224800 656.71 641.96 810.76 875.36 779.15 662.45 782.11 795.49 661.63 784.11 TRUE FALSE 665.9059661 712.0513638 606.0736106 819.2183276 885.2834211 779.9262062 930.5112896 727.9081592 725.1825177 624.3079516 1.066630602 1.140545082 0.970792714 1.312202296 1.418023619 1.249265213 1.490468425 1.165944078 1.161578218 1 9.286114031 -6.272449464 24.65128418 1.279839462 1.067445026 0.29602868 0.136160028 660.0299099 1477788.287 0.037772097 0.056638233 5.34E-07 6.272449464 -0.212394436 RVAFISLS(ph)PVR ddPTM_K562_Paclitaxel_30min_R1 1 RVAFISLSPVR 11 1 Q6ZU65-2;Q6ZU65 Q6ZU65-2 UBN2 Ubinuclein-2 1 RVAFISLS(1)PVR 100.68 0.0055873 28415000 1664.3 2240 1351.5 1458.6 1312.4 1219.6 2727.5 3262.6 2809.4 3890.6 TRUE FALSE 1687.605335 2484.570775 1010.29711 1365.051924 1491.171099 1435.878936 3245.028886 2985.421765 3079.255423 3097.693584 0.544794147 0.802071189 0.326144947 0.440667189 0.481381085 0.463531623 1.047562904 0.963756319 0.994047777 1 11.59697873 -7.761261488 24.99999981 0.998321513 0.510274276 0.814875488 0.11478073 2.106325363 296077.5728 0.048633742 0.035244554 1.73E-08 7.761261488 -0.488047236 RVGDPPQPLPEEPMEVQGAERAS(ph)PEPQEWVPIIQQDIQSQR ddPTM_K562_Paclitaxel_30min_R1 1 RVGDPPQPLPEEPMEVQGAERASPEPQEWVPIIQQDIQSQR 41 2 P46379-4;H0Y4L1 P46379-4 BAG6 Large proline-rich protein BAG6 1 RVGDPPQPLPEEPMEVQGAERAS(0.999)PEPQEWVPIIQQDIQS(0.001)QR 55.084 6.80E-05 43869000 353.86 429.74 478.85 252.13 460.32 329.71 317.84 385.38 257.1 418.68 TRUE FALSE 358.8151318 476.6604665 357.9583952 235.9595103 523.0233773 388.1794391 378.1484808 352.6395635 281.7956038 333.3527862 1.076382579 1.429897953 1.073812519 0.707837223 1.568978569 1.164470361 1.134379242 1.057856956 0.845337479 1 8.380905975 -8.460517347 2.717070269 0.924799511 1.170707289 0.162765402 0.217576746 0.529575191 7.416180016 0.165005764 0.060327556 3.46E-09 8.460517347 0.245907778 RVGDPPQPLPEEPMEVQGAERAS(ph)PEPQR ddPTM_K562_Paclitaxel_30min_R1 3 RVGDPPQPLPEEPMEVQGAERASPEPQR 28 2 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR;RVGDPPQPLPEEPMEVQGAERAS(1)PEPQR 89.923 1.38E-06 400285000 5518.5 5425.3 7091.9 6538.6 5548.6 5304.8 5725.4 6943.1 3709.99 7340.3 TRUE FALSE 5595.776026 6017.652601 5301.462133 6119.243462 6304.413259 6245.531797 6811.764761 6353.240318 4066.351116 5844.342831 0.957468819 1.029654279 0.907110053 1.047037047 1.078720643 1.068645693 1.165531345 1.087075228 0.695775596 1 12.51282509 -8.739653021 24.99948354 0.847887609 1.044014305 0.399641381 0.095475881 200.6899572 230289.8992 0.064826761 0.02445557 1.82E-09 8.739653021 0.196126696 RVGDPPQPLPEEPMEVQGAERAS(ph)PEPQRENASPAPGTTAEEAMSR ddPTM_K562_Paclitaxel_30min_R1 1 RVGDPPQPLPEEPMEVQGAERASPEPQRENASPAPGTTAEEAMSR 45 3 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 RVGDPPQPLPEEPMEVQGAERAS(0.916)PEPQRENAS(0.032)PAPGT(0.015)T(0.015)AEEAMS(0.022)R 41.437 0.0012141 649690000 1365.8 1306.9 1549.4 1420.9 1398.2 1192 1441.3 1549.4 1408.8 1504.1 TRUE FALSE 1384.925414 1449.591762 1158.234807 1329.769834 1588.658512 1403.384463 1714.779151 1417.768799 1544.121535 1197.563594 1.156452501 1.210450759 0.967159333 1.110396007 1.32657549 1.171866338 1.431889846 1.183877671 1.289385835 1 10.22588655 -6.738543893 23.85531575 1.249920946 1.107927411 0.191550519 0.120891797 199.8023561 208176.6664 0.03415918 0.04406135 1.83E-07 6.738543893 -0.141993535 RVGGEGT(ph)GFGVGGALRQGLMVT(ph)GACGHS(ph)RR ddPTM_K562_Paclitaxel_30min_R1 1 RVGGEGTGFGVGGALRQGLMVTGACGHSRR 30 3 Q6PII5 Q6PII5 HAGHL Hydroxyacylglutathione hydrolase-like protein 3 RVGGEGT(1)GFGVGGALRQGLMVT(1)GACGHS(1)RR 41.475 0.01942 11127000 0 0 0 0 0 0 106.22 0 134.81 0 TRUE FALSE 0 0 0 0 0 0 126.3746905 0 147.7591028 0 0 RVGTEGLVDS(ph)FSQGLER ddPTM_K562_Paclitaxel_30min_R1 1 RVGTEGLVDSFSQGLER 17 1 T1ECW5;O75170-6;O75170-2;O75170-4;O75170-3;O75170-5;O75170 T1ECW5 PPP6R2 Serine/threonine-protein phosphatase 6 regulatory subunit 2 1 RVGTEGLVDS(0.827)FS(0.173)QGLER 102.16 0.0011535 21701000 1562.8 1467.7 2329.5 1645.1 1246.9 1180.6 988.99 1414.2 2039.2 2150.5 TRUE FALSE 1584.684022 1627.948449 1741.388914 1539.590649 1416.74889 1389.962834 1176.64569 1294.054883 2235.074271 1712.22692 0.925510517 0.950778446 1.017031618 0.899174421 0.827430567 0.811786579 0.687201957 0.755773004 1.305361016 1 10.7416582 -11.87557865 3.320030191 1.039886836 0.896744734 0.022991192 0.161552704 260310976.9 906988.5971 79363937.58 0.039609875 1.33E-12 11.87557865 -0.143142102 RVILLS(ph)GTPAMS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 RVILLSGTPAMSR 13 1 Q9NZC9;H7BYI2 Q9NZC9 SMARCAL1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A-like protein 1 2 RVILLS(0.989)GT(0.011)PAMS(1)R 87.99 0.011939 36668000 0 0 186.32 134.65 0 114.41 0 58.382 144.43 155.72 TRUE FALSE 0 0 139.2812116 126.0141517 0 134.6990071 0 53.42208469 158.3031468 123.9841785 0 0 1.123378912 1.01637284 0 1.086420935 0 0.43087824 1.276801191 1 6.954012221 -7.427155179 0.155596865 1.175173394 6.42E-15 0.16208093 0.481781873 19.76966454 1.578763313 3.680056837 7.012082188 3.74E-08 7.427155179 -1.175173394 RVNDAEPGS(ph)PEAPQGK ddPTM_K562_Paclitaxel_30min_R1 1 RVNDAEPGSPEAPQGK 16 1 Q8N8A6 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 1 RVNDAEPGS(1)PEAPQGK 96.455 0.0032732 94696000 3844.4 2816 5863.7 4140.7 2874.9 2834.6 2754.7 3628.4 3241.3 4076.4 TRUE FALSE 3898.233461 3123.460403 4383.336414 3875.134035 3266.510052 3337.27651 3277.389945 3320.144772 3552.641348 3245.627442 1.201072375 0.9623595 1.350535911 1.193955284 1.006434075 1.028237704 1.009786244 1.022959299 1.094593083 1 11.66428169 -6.761200434 24.99999954 1.027350712 1.17404749 0.393586692 0.091171449 7.056740962 738241.5737 0.027847277 0.033729494 1.73E-07 6.761200434 0.146696778 RVNNGNTAPEDSS(ph)PAK ddPTM_K562_Paclitaxel_30min_R1 1 RVNNGNTAPEDSSPAK 16 1 E9PJ27;G3V167;Q9UGN5-2;Q9UGN5 E9PJ27 PARP2 Poly [ADP-ribose] polymerase 2 1 RVNNGNTAPEDS(0.111)S(0.889)PAK 82.755 0.01128 2347900 584.63 695.11 1162 999.13 747.66 845.64 397.57 970.99 685.06 826.89 TRUE FALSE 592.8166237 771.0044605 868.6387286 935.0502737 849.50395 995.6023806 473.006832 888.4983388 750.8630739 658.3693641 0.900431667 1.171081922 1.319379023 1.420251799 1.290315127 1.512224649 0.718452069 1.349543869 1.140489085 1 9.362753394 -7.734660011 24.99991578 1.081249055 1.274639867 0.197329493 0.210800319 417.4481981 389709.1051 0.081879912 0.063406248 1.84E-08 7.734660011 0.193390812 RVNS(ph)GDTEVGSSLLR ddPTM_K562_Paclitaxel_30min_R1 2 RVNSGDTEVGSSLLR 15 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 RVNS(0.984)GDT(0.016)EVGSSLLR;RVNS(0.903)GDT(0.096)EVGSSLLR 88.282 0.0090622 25980000 1633.75 1317.83 1910.96 1723.48 1650.89 1741.79 1765.49 2019.42 1350.77 2028.77 TRUE FALSE 1656.627541 1461.715136 1428.514514 1612.943707 1875.769168 2050.672001 2100.482511 1847.857666 1480.517494 1615.30556 1.025581525 0.90491556 0.884361788 0.998537829 1.161247267 1.269525748 1.300362335 1.143967873 0.916555685 1 10.65759138 -6.654358579 3.883636175 1.154625077 0.93582751 0.373082403 0.112814973 0.225505492 6.357362542 0.036266935 0.047362762 2.22E-07 6.654358579 -0.218797567 RVPLS(ph)PLSLLAGPADAR ddPTM_K562_Paclitaxel_30min_R1 3 RVPLSPLSLLAGPADAR 17 1 Q53ET0;H0YDQ8;Q5T4K5 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 RVPLS(0.991)PLS(0.009)LLAGPADAR;RVPLS(1)PLSLLAGPADAR;RVPLS(0.996)PLS(0.004)LLAGPADAR 200.94 2.69E-13 77455000 4517 4202.2 4021.14 4593.19 4254.8 4287.62 5333.7 6473.4 4429 6861.2 TRUE FALSE 4580.251936 4661.010407 3005.953474 4298.603352 4834.375794 5047.969206 6345.741731 5923.444264 4854.425239 5462.883674 0.838431167 0.853214289 0.550250317 0.786874407 0.88494943 0.924048453 1.161610261 1.08430723 0.888619551 1 12.41544699 -7.132230265 1.863094855 1.035844885 0.750502382 0.576067747 0.10384366 0.252093915 1.733929068 0.042585192 0.042680329 7.38E-08 7.132230265 -0.285342503 RVPLS(ph)PLSLLAGPADARR ddPTM_K562_Paclitaxel_30min_R1 2 RVPLSPLSLLAGPADARR 18 2 Q53ET0;H0YDQ8;Q5T4K5 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 RVPLS(0.988)PLS(0.012)LLAGPADARR;RVPLS(1)PLSLLAGPADARR 145.88 1.83E-09 50226000 2146.18 1847.37 2411.1 2069.1 1649.86 1924.58 1524.2 2220.5 2814.7 2329.4 TRUE FALSE 2176.233142 2049.072104 1802.387985 1936.397187 1874.598864 2265.877241 1813.408993 2031.854665 3085.064511 1854.667001 1.173382143 1.104819411 0.971812182 1.04406731 1.010746869 1.22171648 0.977754493 1.095536106 1.663406158 1 10.85694446 -8.562157935 24.99952308 1.347626496 1.069262254 0.274974195 0.166684598 175.0596147 111415.0406 0.102538649 0.038756053 2.74E-09 8.562157935 -0.278364242 RVPS(ph)PTPAPK ddPTM_K562_Paclitaxel_30min_R1 3 RVPSPTPAPK 10 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 RVPS(0.994)PT(0.006)PAPK;RVPS(0.995)PT(0.005)PAPK;RVPS(0.995)PT(0.005)PAPK 134.18 0.0018682 1123718000 19355.7 17222.9 29189.8 20799.1 16734 14882 14989.9 20017.3 18629 22990.1 TRUE FALSE 19626.73952 19103.35447 21820.47398 19465.13882 19013.45411 17521.11375 17834.15527 18316.70542 20418.39869 18304.705 1.072223754 1.04363083 1.192069141 1.063395385 1.038719505 0.957191812 0.974293509 1.000655592 1.115472699 1 14.1599269 -6.750263916 3.036011913 1.00744429 1.099668546 0.353937891 0.053565663 0.280493447 5.327569255 0.017611402 0.02211538 1.78E-07 6.750263916 0.092224256 RVQDLSAGGQGSLTDSGPERRPEGPGAQAPS(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 2 RVQDLSAGGQGSLTDSGPERRPEGPGAQAPSSPR 34 3 P40222 P40222 TXLNA Alpha-taxilin 1 RVQDLSAGGQGSLT(0.002)DS(0.072)GPERRPEGPGAQAPS(0.463)S(0.463)PR;RVQDLSAGGQGS(0.01)LT(0.004)DS(0.103)GPERRPEGPGAQAPS(0.441)S(0.441)PR 46.247 0.021257 151004000 959.85 916.77 1171.56 1149.882 897.22 1081.72 874.05 967.47 1087.34 1292.51 TRUE FALSE 973.2908614 1016.866049 875.7851883 1076.133715 1019.436554 1273.547854 1039.896425 885.2773847 1191.783865 1029.095753 0.945772888 0.988116068 0.851024005 1.045708052 0.990613897 1.237540677 1.010495303 0.860247827 1.158088412 1 10.00716151 -6.296211552 23.65643684 1.041957544 0.934285485 0.216241708 0.100060121 517.3401453 351958.8104 0.028641976 0.04248611 5.06E-07 6.296211552 -0.10767206 RVQPQWS(ph)PPAGTQPCR ddPTM_K562_Paclitaxel_30min_R1 2 RVQPQWSPPAGTQPCR 16 1 B4DKY1;P49589-2;P49589;P49589-3;C9JLN0;E9PRS8;E9PLP0 B4DKY1 CARS "Cysteine--tRNA ligase, cytoplasmic" 1 RVQPQWS(0.999)PPAGT(0.001)QPCR;RVQPQWS(0.824)PPAGT(0.176)QPCR 81.643 0.012058 51774000 1778.22 1757.79 2706.14 2281.99 1766.51 2008.02 1461.87 1909.85 2065.07 2300.2 TRUE FALSE 1803.120566 1949.711457 2022.941488 2135.633375 2007.138569 2364.114153 1739.252201 1747.596322 2263.4292 1831.417977 0.984548906 1.064591197 1.104576625 1.166109212 1.095947836 1.290865429 0.949675182 0.95423128 1.235888928 1 10.83874537 -10.71438521 9.01259876 1 1.093097075 0.063429763 0.108361133 0 0 0.105606789 0.025613409 1.93E-11 10.71438521 0.093097075 RVQT(ph)PLLR ddPTM_K562_Paclitaxel_30min_R1 1 RVQTPLLR 8 1 K7ENL0;K7EJV0;K7EPY1;Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8 K7ENL0 9-Sep Septin-9 1 RVQT(1)PLLR 90.05 0.01828 22454000 1423.9 1414 1681 1441.3 1214.4 1321.6 945.12 1242.1 1365.9 1665.1 TRUE FALSE 1443.838993 1568.385302 1256.61076 1348.861469 1379.82184 1555.967204 1124.451586 1136.575852 1497.100798 1325.751706 1.089071948 1.183015865 0.947847741 1.017431441 1.04078451 1.17364903 0.848161523 0.857306724 1.129246744 1 10.37259489 -7.762796726 24.99989893 0.946787658 1.070203683 0.249020174 0.098113094 52.02199228 958117.2663 0.040232749 0.028805295 1.73E-08 7.762796726 0.123416025 RVS(ph)FADPIYQAGLADDIDRR ddPTM_K562_Paclitaxel_30min_R1 1 RVSFADPIYQAGLADDIDRR 20 2 Q5UIP0-2;Q5UIP0;H7C2B5 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 RVS(1)FADPIYQAGLADDIDRR 49.497 0.030785 7783500 1786.8 2210.8 1704.4 1903.3 1634.8 1897.4 2472.9 2531.9 2402.1 2505.1 TRUE FALSE 1811.820713 2452.18262 1274.10314 1781.230857 1857.487437 2233.877249 2942.119866 2316.799291 2632.832438 1994.559245 0.908381497 1.22943584 0.638789318 0.893044848 0.931277144 1.119985408 1.475072687 1.161559526 1.320007137 1 10.96185426 -7.40725182 3.693645629 1.257255059 0.920536939 0.42405454 0.174773509 0.227519247 5.579630284 0.064392539 0.05539834 3.92E-08 7.40725182 -0.33671812 RVS(ph)GDAAQDLDR ddPTM_K562_Paclitaxel_30min_R1 2 RVSGDAAQDLDR 12 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 RVS(1)GDAAQDLDR;RVS(1)GDAAQDLDR 106.6 0.0042823 35194000 2362.6 2287.91 3028.2 2855.2 2231.58 2291.17 1871.68 2421.8 2607.2 2740.1 TRUE FALSE 2395.683689 2537.711751 2263.693458 2672.080251 2535.558977 2697.47683 2226.821509 2216.052974 2857.633209 2181.666116 1.098098225 1.163198957 1.037598485 1.224788813 1.1622122 1.236429722 1.020697664 1.015761742 1.309839846 1 11.09121461 -10.89065496 6.60714895 0.999999994 1.137251898 0.167299624 0.094016158 8.80E-09 1.41E-09 0.089338777 0.021667835 1.29E-11 10.89065496 0.137251905 RVS(ph)LVGADDLR ddPTM_K562_Paclitaxel_30min_R1 1 RVSLVGADDLR 11 1 A0A0G2JMS7;A0A0G2JNZ2;A0A0G2JPP5;A0A669KB89;Q14160-2;Q14160;Q14160-3;H0YCG0 A0A0G2JMS7 SCRIB Protein scribble homolog 1 RVS(1)LVGADDLR 78.508 0.023785 18315000 1629.4 1428.6 1831.8 2100.5 1817.4 1816.3 1967.6 2141.2 1423.1 2972.1 TRUE FALSE 1652.216627 1584.579379 1369.339435 1965.783331 2064.960649 2138.395303 2340.941828 1959.291695 1559.795114 2366.384389 0.698202978 0.66962045 0.578663146 0.830711756 0.872622664 0.903655092 0.98924834 0.827968484 0.659146976 1 11.20846872 -6.386419294 4.986438551 0.87206569 0.652045093 0.543416729 0.093056946 0.181577169 6.596219108 0.027431609 0.041203574 4.11E-07 6.386419294 -0.220020597 RVS(ph)PLNLSSVT(ph)P ddPTM_K562_Paclitaxel_30min_R1 1 RVSPLNLSSVTP 12 1 Q9UJX2-3;Q9UJX2 Q9UJX2-3 CDC23 Cell division cycle protein 23 homolog 2 RVS(1)PLNLSSVT(1)P 181.71 0.00045764 94119000 3219.1 3345.3 3794.9 3676.6 3526.1 3050.1 3437.4 3753.8 3104 3799.7 TRUE FALSE 3264.177332 3710.551167 2836.83056 3440.799332 4006.414517 3590.992409 4089.628706 3434.89126 3402.153069 3025.319054 1.078953087 1.226499123 0.937696325 1.137334367 1.324294875 1.186979735 1.351800796 1.135381491 1.12456009 1 11.56287158 -5.228174071 21.35368421 1.167097737 1.078951908 0.032669929 0.12124268 7063.946157 4533932.372 0.030907464 3.228873302 5.91E-06 5.228174071 -0.08814583 RVS(ph)PLNLSSVTP ddPTM_K562_Paclitaxel_30min_R1 3 RVSPLNLSSVTP 12 1 Q9UJX2-3;Q9UJX2 Q9UJX2-3 CDC23 Cell division cycle protein 23 homolog 1 RVS(1)PLNLSSVTP;RVS(0.995)PLNLS(0.004)S(0.001)VTP;RVS(1)PLNLSSVTP 115.92 0.0078368 597910000 7761.5 8175.6 8852.5 8712.3 7563.4 7605.3 7987.5 9151.3 8247.4 9044.8 TRUE FALSE 7870.184946 9068.239656 6617.576889 8153.532073 8593.663129 8953.993171 9503.086427 8373.839944 9039.59962 7201.464795 1.092858907 1.259221549 0.918920952 1.13220467 1.19332155 1.243357209 1.31960465 1.162796762 1.255244576 1 12.81407467 -6.726108506 3.932853097 1.213584955 1.096152348 0.146711821 0.109845295 0.362996887 11.95720833 0.033032246 0.041687778 1.88E-07 6.726108506 -0.117432606 RVS(ph)SDLQHATAQLSLEHRDS ddPTM_K562_Paclitaxel_30min_R1 2 RVSSDLQHATAQLSLEHRDS 20 2 P50548;P50548-2 P50548 ERF ETS domain-containing transcription factor ERF 1 RVS(0.495)S(0.495)DLQHAT(0.01)AQLSLEHRDS;RVS(0.5)S(0.5)DLQHATAQLSLEHRDS 79.461 0.0022078 25416000 1573.4 1927.78 1951.89 1592.6 1657.93 1450.61 1347.42 1679.5 2046.8 1890.22 TRUE FALSE 1595.432454 2138.26154 1459.111229 1490.457764 1883.768135 1707.855316 1603.085911 1536.815992 2243.404285 1504.992126 1.060093556 1.42077922 0.969514194 0.990342566 1.251679728 1.134793522 1.065178935 1.021145536 1.490641875 1 10.55554022 RVS(ph)SSSELDLPSGDHCEAGLLQLDVPLLR ddPTM_K562_Paclitaxel_30min_R1 3 RVSSSSELDLPSGDHCEAGLLQLDVPLLR 29 1 A0A0D9SFK2;Q92614-3;Q92614-4;Q92614;Q92614-5;Q92614-2 A0A0D9SFK2 MYO18A Unconventional myosin-XVIIIa 1 RVS(0.356)S(0.212)S(0.212)S(0.212)ELDLPS(0.008)GDHCEAGLLQLDVPLLR;RVS(0.282)S(0.282)S(0.282)S(0.103)ELDLPS(0.05)GDHCEAGLLQLDVPLLR;RVS(0.409)S(0.409)S(0.091)S(0.091)ELDLPSGDHCEAGLLQLDVPLLR 113.62 3.64E-11 41427200 1353.92 1364.36 1293.1 1389.95 1145.85 1153.79 1440.71 2069.87 1522.92 2135.77 TRUE FALSE 1372.879057 1513.325439 966.6409121 1300.804828 1301.934169 1358.398456 1714.077201 1894.021624 1669.203271 1700.498902 0.807338985 0.889930265 0.568445479 0.764954818 0.765618942 0.798823484 1.007984892 1.113803497 0.981596206 1 10.73174236 -7.748483325 3.559930893 1.041158447 0.758248503 0.711147353 0.081523976 0.126036165 3.383137049 0.035761106 0.025122502 1.78E-08 7.748483325 -0.282909944 RVS(ph)TDLPEGQDVYTAACNSVIHR ddPTM_K562_Paclitaxel_30min_R1 4 RVSTDLPEGQDVYTAACNSVIHR 23 1 Q15751;H0YNB1 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 RVS(0.798)T(0.202)DLPEGQDVYTAACNSVIHR;RVS(0.757)T(0.243)DLPEGQDVYTAACNSVIHR;RVS(0.784)T(0.216)DLPEGQDVYTAACNSVIHR;RVS(0.5)T(0.5)DLPEGQDVYTAACNSVIHR 150.65 6.64E-19 496538000 4171.93 4017.47 4725.85 4868.11 4485.56 4025.59 3766.15 4727.05 4138.54 5256.98 TRUE FALSE 4230.349892 4456.110961 3532.750719 4555.891213 5096.569213 4739.471864 4480.757302 4325.457597 4536.065258 4185.60459 1.010690284 1.064627789 0.844023998 1.088466699 1.217642303 1.132326707 1.070516148 1.033412857 1.083729999 1 12.03122031 -6.480451316 24.96488864 1.097965896 0.97959534 0.329183749 0.07536622 555.5780715 326909.5508 0.021867437 0.032431724 3.31E-07 6.480451316 -0.118370555 RVS(ph)VCAETYNPDEEEEDTDPR ddPTM_K562_Paclitaxel_30min_R1 4 RVSVCAETYNPDEEEEDTDPR 21 1 P13861-2;P13861 P13861-2 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 1 RVS(1)VCAETYNPDEEEEDTDPR;RVS(1)VCAETYNPDEEEEDTDPR;RVS(1)VCAETYNPDEEEEDTDPR;RVS(1)VCAETYNPDEEEEDTDPR 136.37 1.37E-11 313377000 3381 2710.44 3436.9 2768.43 2955.3 2481.13 3183.54 3631.71 3123.22 3861.44 TRUE FALSE 3428.344431 3006.375005 2569.212088 2590.875291 3357.861894 2921.123569 3787.600096 3323.173567 3423.219236 3074.476408 1.11509863 0.977849431 0.835658417 0.842704561 1.092173576 0.950120665 1.231949637 1.080890898 1.113431616 1 11.58612502 -7.310182983 1.808345715 1.105471586 0.947323216 0.249548029 0.103928674 0.457451142 2.951021114 0.045065506 0.039766577 4.90E-08 7.310182983 -0.15814837 RVSS(ph)SSELDLPSGDHCEAGLLQLDVPLLR ddPTM_K562_Paclitaxel_30min_R1 1 RVSSSSELDLPSGDHCEAGLLQLDVPLLR 29 1 A0A0D9SFK2;Q92614-3;Q92614-4;Q92614;Q92614-5;Q92614-2 A0A0D9SFK2 MYO18A Unconventional myosin-XVIIIa 1 RVS(0.245)S(0.324)S(0.324)S(0.106)ELDLPS(0.001)GDHCEAGLLQLDVPLLR 66.972 0.00038533 19196000 293.38 535.76 512.66 436.62 354.4 562.29 499.06 660.02 450.88 779.63 TRUE FALSE 297.4882252 594.2560886 383.2326425 408.6171474 402.67528 662.0042366 593.7540297 603.9471813 494.1890386 620.7409781 0.479246958 0.957333428 0.617379319 0.658273196 0.648700979 1.066474198 0.956524623 0.972945564 0.796127622 1 9.277847578 -7.251644113 24.83612548 0.956605389 0.684210409 0.555980079 0.127663873 497.4999007 1261423.409 0.041043112 0.040553246 5.60E-08 7.251644113 -0.27239498 RVT(ph)LLT(ph)PAGATGSGGGTSGDSS(ph)KGEDK ddPTM_K562_Paclitaxel_30min_R1 1 RVTLLTPAGATGSGGGTSGDSSKGEDK 27 2 A0A087WYC8;Q9BZI7-2;Q9BZI7 A0A087WYC8 UPF3B Regulator of nonsense transcripts 3B 3 RVT(0.844)LLT(0.468)PAGAT(0.516)GS(0.159)GGGT(0.034)S(0.109)GDS(0.115)S(0.755)KGEDK 51.645 0.019193 9570900 1663.1 1737.7 2214.6 1954.7 1407 1533.6 1261.3 2251.3 1667 1940.1 TRUE FALSE 1686.388531 1927.427963 1655.49684 1829.334291 1598.657221 1805.562427 1500.625091 2060.038013 1827.122798 1544.706555 1.091720965 1.247763179 1.071722545 1.184260069 1.034926158 1.168870826 0.971462888 1.333611233 1.18282841 1 10.59311708 -10.76625377 10.49628161 1.000024812 1.143356318 0.155353738 0.10004096 0 0 0.093646777 0.022712679 1.71E-11 10.76625377 0.143331506 RVTFGEDLS(ph)PEVFDESLPANTPLR ddPTM_K562_Paclitaxel_30min_R1 2 RVTFGEDLSPEVFDESLPANTPLR 24 1 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 1 RVT(0.001)FGEDLS(0.999)PEVFDESLPANTPLR;RVT(0.029)FGEDLS(0.971)PEVFDESLPANTPLR 125.99 2.52E-10 30532000 1649.61 1852.02 1935.68 1938.11 1997.31 1557.22 1556.63 2023.29 1843.62 1863.92 TRUE FALSE 1672.709629 2054.229807 1446.993644 1813.808299 2269.377437 1833.371103 1851.992416 1851.398886 2020.707939 1484.052081 1.127123267 1.384203313 0.975028884 1.222199896 1.529176412 1.235381916 1.24792953 1.247529591 1.361615246 1 10.53532601 -4.966112082 14.88847006 1.252288468 0.727218037 0.046021522 0.157409007 3824377.839 50365708.48 0.038525006 50860691.13 1.08E-05 4.966112082 -0.525070431 RVTNDIS(ph)PES(ph)SPGVGR ddPTM_K562_Paclitaxel_30min_R1 1 RVTNDISPESSPGVGR 16 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E9PGW9;E7EV93;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 2 RVT(0.03)NDIS(0.971)PES(0.982)S(0.017)PGVGR 71.263 0.023635 0 1239.7 1229.1 1342.9 1251.5 1174 1208 1132.9 1414.3 1351.8 1704.8 TRUE FALSE 1257.059625 1363.297295 1003.868286 1171.234392 1333.918676 1422.221839 1347.861861 1294.146387 1481.64643 1357.360824 0.926105721 1.004373539 0.73957364 0.862876231 0.982729612 1.047784652 0.993001888 0.953428421 1.091564162 1 10.40658856 -6.861517773 4.768124446 1.012752426 0.881961873 0.448977581 0.07018751 0.213068305 8.143746068 0.023032246 0.026502524 1.38E-07 6.861517773 -0.130790554 RVTNDIS(ph)PESSPGVGR ddPTM_K562_Paclitaxel_30min_R1 2 RVTNDISPESSPGVGR 16 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E9PGW9;E7EV93;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 RVTNDIS(0.448)PES(0.401)S(0.151)PGVGR;RVTNDIS(0.999)PES(0.001)SPGVGR 159.64 4.82E-07 81004000 4833 3973.8 5109.8 5076.1 4860.5 4438.9 3989.9 4517 3924.8 5555.4 TRUE FALSE 4900.676911 4407.672923 3819.767793 4750.541666 5522.582389 5226.07659 4746.962696 4133.252656 4301.794576 4423.206431 1.107946687 0.996488179 0.863574389 1.07400406 1.248547287 1.181513156 1.073194926 0.934447153 0.972551167 1 12.11087686 -8.248911488 22.03759936 0.965124391 1.076920536 0.206351441 0.097764446 277.1214604 487483.0057 0.05369971 0.030628146 5.64E-09 8.248911488 0.111796145 RVTQHES(ph)DNENEIQIQNK ddPTM_K562_Paclitaxel_30min_R1 3 RVTQHESDNENEIQIQNK 18 1 Q5VZL5-2;Q5VZL5-4;Q5VZL5 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 RVT(0.003)QHES(0.997)DNENEIQIQNK;RVT(0.001)QHES(0.999)DNENEIQIQNK;RVT(0.153)QHES(0.847)DNENEIQIQNK 147.08 2.66E-10 118593000 8848.5 7861.8 13211.8 10259.4 7876.8 6766.4 6718.8 9443.8 10508 11569.7 TRUE FALSE 8972.4063 8720.177911 9876.317689 9601.408003 8949.753515 7966.326035 7993.657226 8641.490244 11517.34035 9211.788789 0.974013463 0.94663242 1.072138964 1.042295717 0.971554355 0.864796862 0.867763841 0.938090358 1.250282721 1 13.16926562 -8.735933802 24.98627571 1.125141507 0.959901299 0.387589142 0.08320324 203.999265 199846.8169 0.058937309 0.022257797 1.84E-09 8.735933802 -0.165240208 RVVLGDGVQLPPGDYS(ph)TTPGGTLFS(ph)TTPGGTR ddPTM_K562_Paclitaxel_30min_R1 1 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 RVVLGDGVQLPPGDY(0.186)S(0.261)T(0.262)T(0.262)PGGT(0.215)LFS(0.254)T(0.254)T(0.254)PGGT(0.054)R 59.598 0.0022622 27245000 453.95 623 676.46 495.01 412.43 396.88 565.3 713.74 424.05 789.43 TRUE FALSE 460.3067006 691.0212469 505.6793066 463.2622742 468.6099485 467.2610955 672.5627239 653.103332 464.7818972 628.5437327 0.732338383 1.099400425 0.804525255 0.737040639 0.745548677 0.74340268 1.070033299 1.039073811 0.739458327 1 9.295869317 -7.754057382 24.99977125 0.965397515 0.81696742 0.241560719 0.131380643 269.8020652 913710.7687 0.052785708 0.040043123 1.76E-08 7.754057382 -0.148430096 RVVLGDGVQLPPGDYS(ph)TTPGGTLFS(ph)TTPGGTRIIYDR ddPTM_K562_Paclitaxel_30min_R1 2 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDR 37 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 RVVLGDGVQLPPGDY(0.181)S(0.235)T(0.235)T(0.235)PGGT(0.105)LFS(0.323)T(0.323)T(0.323)PGGT(0.026)RIIY(0.014)DR;RVVLGDGVQLPPGDY(0.229)S(0.256)T(0.256)T(0.256)PGGT(0.063)LFS(0.306)T(0.306)T(0.306)PGGT(0.013)RIIY(0.009)DR 78.909 8.64E-08 57543000 2291.1 2487.4 3002.4 2523.1 2040.02 1971 2461.6 2998 3305.9 2581.6 TRUE FALSE 2323.182469 2758.982744 2244.406987 2361.279659 2317.905262 2320.529176 2928.67575 2743.301187 3623.446466 2055.468503 1.130244742 1.342264666 1.091919912 1.148779296 1.127677344 1.128953897 1.424821517 1.334635478 1.762832396 1 11.00525155 -7.764195876 24.90224262 1.408458686 1.16455275 0.248100861 0.184132243 87.15238891 787318.7735 0.070582668 0.050001139 1.72E-08 7.764195876 -0.243905936 RVVLGDGVQLPPGDYST(ph)TPGGTLFS(ph)TTPGGTR ddPTM_K562_Paclitaxel_30min_R1 5 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 RVVLGDGVQLPPGDY(0.046)S(0.047)T(0.429)T(0.429)PGGT(0.078)LFS(0.307)T(0.307)T(0.312)PGGT(0.046)R;RVVLGDGVQLPPGDY(0.003)S(0.107)T(0.441)T(0.441)PGGT(0.101)LFS(0.299)T(0.299)T(0.299)PGGT(0.01)R;RVVLGDGVQLPPGDY(0.001)S(0.047)T(0.51)T(0.476)PGGT(0.097)LFS(0.281)T(0.281)T(0.281)PGGT(0.025)R;RVVLGDGVQLPPGDY(0.037)S(0.162)T(0.489)T(0.298)PGGT(0.039)LFS(0.321)T(0.321)T(0.321)PGGT(0.013)R;RVVLGDGVQLPPGDY(0.022)S(0.071)T(0.435)T(0.435)PGGT(0.103)LFS(0.301)T(0.301)T(0.305)PGGT(0.026)R 101.87 4.78E-16 355982000 6301.55 5975.41 7815.34 7474.8 5752.4 5796.08 6681.1 8148.34 5118.56 9083.39 TRUE FALSE 6389.791142 6627.825471 5842.260758 6995.399784 6535.974269 6823.933407 7948.803847 7456.087657 5610.220558 7232.190132 0.883520901 0.916434075 0.807813491 0.967258833 0.903733744 0.943550056 1.099086681 1.030958468 0.77572913 1 12.82021689 -6.855817419 1.455502951 0.977590452 0.879856611 0.165306467 0.085186595 0.711307464 3.134954993 0.033941175 0.043032883 1.39E-07 6.855817419 -0.097733841 RVVLGDGVQLPPGDYST(ph)TPGGTLFST(ph)TPGGTR ddPTM_K562_Paclitaxel_30min_R1 2 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 RVVLGDGVQLPPGDY(0.062)S(0.185)T(0.676)T(0.076)PGGT(0.008)LFS(0.164)T(0.41)T(0.41)PGGT(0.008)R;RVVLGDGVQLPPGDY(0.1)S(0.122)T(0.397)T(0.397)PGGT(0.1)LFS(0.169)T(0.35)T(0.35)PGGT(0.014)R 87.868 2.78E-07 70484000 1617.5 1407.91 1582.48 1378.08 1306.69 1236.82 1568.19 1926.72 1132.81 1652.87 TRUE FALSE 1640.14999 1561.630375 1182.963352 1289.696117 1484.6833 1456.152661 1865.745866 1763.03311 1241.621462 1316.014187 1.246301147 1.186636429 0.898898632 0.980001682 1.128166638 1.106487055 1.417724736 1.339676371 0.943471183 1 10.36195933 -7.54754968 24.99643988 1.211893227 1.081010103 0.042929584 0.161156245 509.7235604 516443.9064 0.063328764 0.04905609 2.83E-08 7.54754968 -0.130883124 RVVLGDGVQLPPGDYSTT(ph)PGGTLFS(ph)TTPGGTRIIYDRK ddPTM_K562_Paclitaxel_30min_R1 1 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRK 38 3 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 RVVLGDGVQLPPGDY(0.133)S(0.144)T(0.144)T(0.458)PGGT(0.174)LFS(0.317)T(0.316)T(0.27)PGGT(0.023)RIIY(0.021)DRK 51.975 0.00049179 38902000 1573.2 1477.9 2723.3 1367.2 1382.1 932.85 1123.9 1884.9 2259.4 2105.4 TRUE FALSE 1595.229654 1639.26212 2035.769234 1279.513911 1570.365419 1098.27785 1337.154158 1724.76598 2476.425465 1676.318324 0.951626926 0.977894291 1.21442879 0.763288149 0.936794281 0.655172609 0.797673174 1.028901226 1.477300241 1 10.71108042 -8.53258684 23.60384958 1.2434674 0.902313812 0.367597468 0.176652087 114.6247557 278679.6937 0.120112983 0.0455542 2.93E-09 8.53258684 -0.341153589 RVVLGDGVQLPPGDYSTT(ph)PGGTLFSTT(ph)PGGTR ddPTM_K562_Paclitaxel_30min_R1 1 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 RVVLGDGVQLPPGDY(0.087)S(0.127)T(0.389)T(0.419)PGGT(0.08)LFS(0.243)T(0.228)T(0.4)PGGT(0.028)R 57.712 0.0018767 0 383.69 489.43 378.8 333.25 378.42 435.44 444.73 346.75 318.99 517.43 TRUE FALSE 389.0628438 542.8676225 283.1672551 311.8768366 429.9672107 512.6591701 529.1151959 317.2914232 349.6304148 411.977482 0.944378906 1.317711881 0.687336729 0.757023988 1.043666777 1.244386387 1.28433038 0.770166907 0.848663896 1 8.686421674 -8.317197327 24.99863969 0.857061557 1.0341024 0.120302933 0.205056386 701.0485778 314305.6082 0.120853479 0.058056153 4.82E-09 8.317197327 0.177040843 RVVLGDGVQLPPGDYSTT(ph)PGGTLFSTTPGGTR ddPTM_K562_Paclitaxel_30min_R1 1 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 RVVLGDGVQLPPGDY(0.105)S(0.116)T(0.116)T(0.634)PGGT(0.013)LFS(0.005)T(0.005)T(0.005)PGGT(0.002)R 78.45 2.30E-05 23208000 630.59 672.52 776.36 561.17 526.56 737.54 651.93 828.72 554.93 919.37 TRUE FALSE 639.4202055 745.9480079 580.3583161 525.1790679 598.2863867 868.3323634 775.6303142 758.3150633 608.233506 732.0018893 0.873522616 1.019052025 0.792837183 0.717455891 0.81732902 1.186243336 1.059601519 1.035946866 0.830917945 1 9.515703562 -7.229620006 24.98274218 1.027104869 0.843885269 0.405691091 0.107953954 720.0303005 565326.7397 0.038149436 0.038146125 5.89E-08 7.229620006 -0.183219599 RVVLGDGVQLPPGDYSTTPGGT(ph)LFSTTPGGTR ddPTM_K562_Paclitaxel_30min_R1 1 RVVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 32 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 RVVLGDGVQLPPGDY(0.002)S(0.007)T(0.089)T(0.089)PGGT(0.273)LFS(0.166)T(0.166)T(0.206)PGGT(0.002)R 97.304 6.60E-11 28391000 549.02 513.71 566.54 525.47 541.29 521.45 629.2 885.42 363.87 739.08 TRUE FALSE 556.7079739 569.7985951 423.5099701 491.7687061 615.0228621 613.921836 748.5874154 810.1980444 398.8213393 588.4550903 0.946050061 0.968295804 0.719698031 0.83569454 1.045148342 1.043277297 1.272123273 1.376822221 0.677743036 1 9.200788506 -6.892897633 3.503816373 1.105424975 0.864154086 0.214365507 0.184218468 0.334939967 8.016820753 0.060198926 0.069358829 1.28E-07 6.892897633 -0.241270889 RWDQTADQT(ph)PGATPK ddPTM_K562_Paclitaxel_30min_R1 1 RWDQTADQTPGATPK 15 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 RWDQTADQT(0.998)PGAT(0.002)PK 96.143 0.008896 127900000 1989.8 1617.8 2988.2 2119.3 1376.4 1648.1 1605.8 2227.8 2526.4 3156.9 TRUE FALSE 2017.663339 1794.436875 2233.791952 1983.377584 1563.888983 1940.367395 1910.492167 2038.534485 2769.072008 2513.522047 0.802723549 0.713913322 0.88870991 0.789083026 0.622190279 0.771971504 0.760085701 0.811027095 1.101670069 1 11.29549463 -8.683567398 5.141745441 1.04972972 0.76466923 0.733063054 0.068092647 0.098575595 4.452259323 0.051651477 0.017898356 2.07E-09 8.683567398 -0.28506049 RWDQTADQTPGAT(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 RWDQTADQTPGATPK 15 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 RWDQTADQTPGAT(1)PK 141.18 3.27E-06 85283000 4367.8 4471.1 7312.8 5236.9 4365.4 4132.3 3881.2 5858.1 4876 7164.3 TRUE FALSE 4428.962676 4959.269818 5466.593196 4901.028673 4960.041387 4865.105385 4617.637439 5360.41784 5344.361587 5704.211727 0.776437287 0.869404934 0.958343319 0.859194733 0.869540197 0.852897055 0.809513682 0.939729816 0.93691501 1 12.47781182 -8.423131526 5.576789549 0.959370439 0.861502384 0.505275562 0.04660791 0.211464847 9.479099634 0.027712963 0.012813592 3.77E-09 8.423131526 -0.097868055 RY(ph)S(ph)SVSNIY(ph)SDHRYGPR ddPTM_K562_Paclitaxel_30min_R1 1 RYSSVSNIYSDHRYGPR 17 2 Q9UPA5 Q9UPA5 BSN Protein bassoon 3 RY(0.994)S(0.964)S(0.028)VS(0.04)NIY(0.701)S(0.16)DHRY(0.112)GPR 50.077 0.030071 0 495.99 314.87 513.99 503.38 411.42 489.71 465.15 641.02 422.19 403.15 TRUE FALSE 502.9353903 349.2485714 384.2268676 471.0954598 467.4623694 576.5531926 553.4097843 586.5613499 462.7432359 320.9878087 1.566836424 1.088043103 1.197013896 1.467642842 1.456324373 1.796184082 1.724083499 1.827363326 1.441622465 1 8.326374694 -6.657058872 2.116959722 1.614118643 1.271096767 0.13748743 0.254090064 0.431269181 3.95040204 0.080728742 0.112277136 2.20E-07 6.657058872 -0.343021875 RYEEDMYWR ddPTM_K562_Paclitaxel_30min_R1 1 RYEEDMYWR 9 1 Q96KR1 Q96KR1 ZFR Zinc finger RNA-binding protein 0 115.78 0.0059266 5948900 1171.9 926.43 1060.8 1155.8 950.59 1125.2 913.8 934.01 1077.4 971.04 FALSE TRUE 1188.310216 1027.58076 792.9879202 1081.672161 1080.076452 1324.738421 1087.18878 854.6600206 1180.889084 773.141515 1.536989274 1.329097895 1.025669822 1.399061026 1.396997097 1.713448826 1.406196354 1.105438014 1.527390602 1 9.594588697 -11.60873977 2.839324945 0.971129921 1.373434582 0.264853513 0.190545469 46462333.62 45974871.67 9982475.507 0.050562601 2.46E-12 11.60873977 0.402304661 RYEPYGMY(ph)SDDDANSDASSVCSER ddPTM_K562_Paclitaxel_30min_R1 1 RYEPYGMYSDDDANSDASSVCSER 24 1 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 RY(0.003)EPY(0.012)GMY(0.526)S(0.457)DDDANS(0.002)DASSVCSER 79.445 0.00069509 17097000 641.41 620.4 875.1 880.92 810.91 692.43 664.72 904.37 1092.1 949.95 TRUE FALSE 650.3917189 688.1373701 654.1701819 824.4217341 921.3696708 815.2227383 790.8471499 827.5381236 1197.001085 756.3496686 0.859908778 0.909813805 0.864904434 1.090000787 1.218179513 1.077838429 1.045610493 1.09412109 1.582602775 1 9.562909552 -6.366981449 3.571011921 1.16327701 0.880014438 0.419706703 0.152911767 0.246969108 5.792468517 0.044518808 0.06946434 4.30E-07 6.366981449 -0.283262572 RYES(ph)YGMHSDDDANSDASSACSER ddPTM_K562_Paclitaxel_30min_R1 2 RYESYGMHSDDDANSDASSACSER 24 1 E3W994;J3KR49;O75122;E7ERI8;E7EW49;O75122-3;A0A0U1RQI6;H7C4M5 E3W994 CLASP2 CLIP-associating protein 2 1 RY(0.007)ES(0.347)Y(0.3)GMHS(0.347)DDDANSDASSACSER;RY(0.055)ES(0.411)Y(0.306)GMHS(0.228)DDDANSDASSACSER 127.9 1.40E-10 53196400 1956.5 2201.23 3266.8 2648.9 2548.7 1936.39 1922.39 2740.9 2767.6 2727.1 TRUE FALSE 1983.897036 2441.567735 2442.055937 2479.01141 2895.87609 2279.781578 2287.153467 2508.043437 3033.440346 2171.315523 0.913684361 1.124464736 1.124689577 1.141709431 1.333696581 1.049954073 1.053349199 1.155080139 1.39705184 1 11.08435367 -4.8504979 1.451996023 1.163044857 0.498854754 0.277065961 0.117077745 4.667536209 4.043471405 0.033053827 6.001549366 1.41E-05 4.8504979 -0.664190102 RYESYGMHS(ph)DDDANSDASSACSER ddPTM_K562_Paclitaxel_30min_R1 2 RYESYGMHSDDDANSDASSACSER 24 1 E3W994;J3KR49;O75122;E7ERI8;E7EW49;O75122-3;A0A0U1RQI6;H7C4M5 E3W994 CLASP2 CLIP-associating protein 2 1 RY(0.059)ES(0.094)Y(0.073)GMHS(0.774)DDDANSDASSACSER;RY(0.067)ES(0.08)Y(0.067)GMHS(0.784)DDDANS(0.001)DASSACSER 115.83 4.81E-08 70239000 2343.78 2373.53 3152.26 2644.49 2603.89 2244.75 2397.86 2891.77 2785.2 2548.6 TRUE FALSE 2376.600151 2632.680032 2356.432976 2474.884248 2958.583902 2642.824895 2852.841417 2646.096089 3052.730905 2029.193921 1.171204056 1.297401892 1.161265541 1.2196391 1.458009445 1.302401346 1.405898859 1.304013412 1.504405702 1 10.98669103 -6.64970144 11.03344217 1.346769285 1.214066876 0.148924451 0.132792931 0.588397788 55.03112518 0.036081245 0.046579643 2.24E-07 6.64970144 -0.132702409 RYGLLANTEDPTEMASLDS(ph)DEETVFESR ddPTM_K562_Paclitaxel_30min_R1 4 RYGLLANTEDPTEMASLDSDEETVFESR 28 1 Q9BVV8 Q9BVV8 C19orf24 Uncharacterized membrane protein C19orf24 1 RYGLLANTEDPTEMAS(0.005)LDS(0.964)DEET(0.032)VFESR;RYGLLANTEDPTEMAS(0.063)LDS(0.664)DEET(0.266)VFES(0.007)R;RYGLLANTEDPTEMAS(0.051)LDS(0.728)DEET(0.067)VFES(0.154)R;RYGLLANTEDPT(0.001)EMAS(0.036)LDS(0.92)DEET(0.041)VFES(0.002)R 148.14 9.75E-32 77978000 2796.65 2618.48 3663.59 2826.19 2532.15 2644.32 2449.6 3113.43 2982.12 3462 TRUE FALSE 2835.811728 2904.374502 2738.671394 2644.930823 2877.0717 3113.253024 2914.398812 2848.924688 3268.56595 2756.4425 1.028794081 1.053667726 0.993552884 0.959545074 1.04376264 1.129446025 1.057304411 1.033551285 1.185791451 1 11.42859179 -7.002236062 24.9518225 1.082352441 1.009825471 0.29527328 0.052709755 109.9790319 1227261.594 0.016162402 0.018028254 9.95E-08 7.002236062 -0.07252697 RYPSSISS(ph)SPQK ddPTM_K562_Paclitaxel_30min_R1 2 RYPSSISSSPQK 12 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 RYPSS(0.001)IS(0.002)S(0.909)S(0.089)PQK;RYPS(0.043)S(0.043)IS(0.043)S(0.435)S(0.435)PQK 147.73 2.95E-24 0 3999.4 3070.7 5553.2 4418.8 3117.5 3059.6 2676.6 4189.2 2468.15 4935.3 TRUE FALSE 4055.403939 3405.96941 4151.225979 4135.397946 3542.15628 3602.177101 3184.470877 3833.301312 2705.226835 3929.483151 1.032045127 0.866772876 1.056430533 1.052402514 0.901430581 0.916705063 0.810404512 0.975523031 0.688443424 1 11.94012385 -6.906043659 5.781229856 0.876231636 0.99575462 0.275064362 0.095571398 0.285289261 14.33837522 0.028668783 0.032639819 1.24E-07 6.906043659 0.119522985 RYPSSISSS(ph)PQK ddPTM_K562_Paclitaxel_30min_R1 2 RYPSSISSSPQK 12 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 RYPSSISS(0.209)S(0.791)PQK;RYPSSIS(0.001)S(0.183)S(0.816)PQK 101.2 0.0056029 31237000 1843.16 1446.91 2920.8 1919.65 1407.89 1348.37 1333.07 2137.1 1133.43 2224.26 TRUE FALSE 1868.969927 1604.888527 2183.407916 1796.532241 1599.668454 1587.484487 1586.013073 1955.540016 1242.301016 1770.954591 1.055346047 0.906227938 1.232898871 1.01444286 0.903280334 0.896400447 0.895569588 1.104229338 0.701486657 1 10.79031151 -6.633870887 4.981324833 0.920526558 1.059956541 0.240480156 0.119766791 0.315064966 12.47868311 0.034591207 0.044980343 2.32E-07 6.633870887 0.139429983 RYS(ph)DFEWLR ddPTM_K562_Paclitaxel_30min_R1 3 RYSDFEWLR 9 1 O60493-4;O60493;O60493-3 O60493-4 SNX3 Sorting nexin-3 1 RY(0.132)S(0.868)DFEWLR;RY(0.004)S(0.996)DFEWLR;RY(0.127)S(0.873)DFEWLR 100.02 0.0066371 20863500 3260.06 2936.42 3540.44 3548.9 3059.44 3219.74 3063.34 3788.8 3163.6 3975 TRUE FALSE 3305.710898 3257.028266 2646.612134 3321.289438 3476.187525 3790.715682 3644.592773 3466.917791 3467.477915 3164.892818 1.044493791 1.029111712 0.836240684 1.049416087 1.098358688 1.197739039 1.1515691 1.095429763 1.095606744 1 11.62794093 -6.569934797 4.177990269 1.116929796 0.971085991 0.418984743 0.070821332 0.191347326 7.140114626 0.021580495 0.029062992 2.69E-07 6.569934797 -0.145843805 RYS(ph)DHAGPAIPSVVAYPK ddPTM_K562_Paclitaxel_30min_R1 1 RYSDHAGPAIPSVVAYPK 18 1 J3KNR0;P27448-8;P27448-3;P27448-4;P27448-2;P27448;H0YIY6;P27448-6;P27448-7 J3KNR0 MARK3 MAP/microtubule affinity-regulating kinase 3 1 RY(0.001)S(0.999)DHAGPAIPSVVAYPK 130.98 6.96E-09 56297000 4472.7 3249.6 5792.7 3917.7 3090.5 3357.3 3321.2 5316.5 3006.9 6235.4 TRUE FALSE 4535.331599 3604.402317 4330.261242 3666.436257 3511.478423 3952.670016 3951.380362 4864.83014 3295.72618 4964.622057 0.913530083 0.726017464 0.872223745 0.738512663 0.70730025 0.796167356 0.795907587 0.979899393 0.663842311 1 12.27746818 -11.18432771 5.656980196 1.000004864 0.799889147 0.294453973 0.093212388 5.46E-06 7.87E-07 0.08610889 0.020883966 6.54E-12 11.18432771 -0.200115717 RYS(ph)DHAGPAIPSVVAYPKR ddPTM_K562_Paclitaxel_30min_R1 1 RYSDHAGPAIPSVVAYPKR 19 2 J3KNR0;P27448-8;P27448-3;P27448-4;P27448-2;P27448;H0YIY6;P27448-6;P27448-7 J3KNR0 MARK3 MAP/microtubule affinity-regulating kinase 3 1 RY(0.443)S(0.557)DHAGPAIPSVVAYPKR 78.501 0.0040472 11459000 525.06 375.23 976.27 750.18 487.56 513.15 340.82 442.69 558.53 928.96 TRUE FALSE 532.4124599 416.1988803 729.7985641 702.0668125 553.9739265 604.1499475 405.4888158 405.0807213 612.1793021 739.6374421 0.719828972 0.562706614 0.986697702 0.949203992 0.748980372 0.816819043 0.548226459 0.54767471 0.827674841 1 9.530674449 RYS(ph)GDSDSSASSAQSGPLGTR ddPTM_K562_Paclitaxel_30min_R1 3 RYSGDSDSSASSAQSGPLGTR 21 1 A0A5E8;Q99501 A0A5E8 GAS2L1 GAS2-like protein 1 1 RY(0.018)S(0.958)GDS(0.024)DSSASSAQSGPLGTR;RY(0.003)S(0.333)GDS(0.239)DS(0.047)S(0.047)AS(0.154)S(0.154)AQS(0.023)GPLGTR;RYS(0.964)GDS(0.036)DSSASSAQSGPLGTR 159.75 5.71E-18 62661000 1894.31 1740.32 2880.18 2315.64 2163.16 2303.21 1703.4 2247.68 2109.63 2838.81 TRUE FALSE 1920.836184 1930.334023 2153.042937 2167.125215 2457.819015 2711.651955 2026.611258 2056.725554 2312.269388 2260.258964 0.849830137 0.854032239 0.952564716 0.958795098 1.087405936 1.199708528 0.896627904 0.909951288 1.023010825 1 11.14227236 -5.966664793 1.813122609 1.015029836 0.843598509 0.374111212 0.082013479 0.441311759 2.792765411 0.026934908 0.080405599 1.08E-06 5.966664793 -0.171431327 RYS(ph)PDELR ddPTM_K562_Paclitaxel_30min_R1 4 RYSPDELR 8 1 S5FZ81;Q8WUB8-3;Q8WUB8-2;Q8WUB8 S5FZ81 PHF10 PHD finger protein 10 1 RY(0.436)S(0.564)PDELR;RY(0.36)S(0.64)PDELR;RY(0.035)S(0.965)PDELR;RY(0.02)S(0.98)PDELR 100.93 0.0083791 74683000 2972.21 2696.44 2751.51 2535.78 2648.01 2315.69 2703.29 3024.96 2638.1 2929.06 TRUE FALSE 3013.83011 2990.846438 2056.85727 2373.146421 3008.713793 2726.345108 3216.225165 2767.970767 2891.501292 2332.115964 1.292315715 1.282460428 0.881970409 1.01759366 1.290121863 1.169043542 1.379101732 1.186892423 1.239861712 1 11.18742381 -6.771604851 24.99570419 1.226505067 1.113389381 0.083431402 0.14388121 469.7640012 1155090.546 0.046152632 0.05292172 1.69E-07 6.771604851 -0.113115687 RYS(ph)TDSSSSTSCYSPESSR ddPTM_K562_Paclitaxel_30min_R1 1 RYSTDSSSSTSCYSPESSR 19 1 Q9H6A9;Q9H6A9-2 Q9H6A9 PCNXL3 Pecanex-like protein 3 1 RYS(0.704)T(0.047)DS(0.147)S(0.046)S(0.007)S(0.023)T(0.023)S(0.002)CYSPESSR 144.33 4.05E-22 0 359.75 306.02 308.3 456.81 143.96 275.15 296.01 350.55 284.85 561.95 TRUE FALSE 364.7876099 339.4322985 230.465852 427.5122512 163.5697893 323.9439892 352.1763522 320.7685894 312.2111152 447.4242815 0.815305796 0.758636293 0.515094646 0.955496313 0.36558094 0.724019689 0.787119445 0.716922623 0.697796539 1 8.805499743 -10.80772951 0.618010621 1.055668749 0.695685709 0.249611563 0.153794894 28.90267279 7.038601928 3.376379792 0.058998644 1.56E-11 10.80772951 -0.35998304 RYVEPPEMIGPMRPEQFSDEVEPAT(ph)PEEGEPATQR ddPTM_K562_Paclitaxel_30min_R1 9 RYVEPPEMIGPMRPEQFSDEVEPATPEEGEPATQR 35 2 Q9UEU5;Q6NT46;Q13066;Q4V321 Q9UEU5 GAGE2D;GAGE2A;GAGE2B;GAGE13 G antigen 2D;G antigen 2A;G antigen 2B/2C;G antigen 13 1 RYVEPPEMIGPMRPEQFS(0.001)DEVEPAT(0.997)PEEGEPAT(0.001)QR;RYVEPPEMIGPMRPEQFS(0.001)DEVEPAT(0.997)PEEGEPAT(0.002)QR;RYVEPPEMIGPMRPEQFSDEVEPAT(0.996)PEEGEPAT(0.004)QR;RYVEPPEMIGPMRPEQFS(0.001)DEVEPAT(0.999)PEEGEPATQR;RYVEPPEMIGPMRPEQFS(0.002)DEVEPAT(0.997)PEEGEPAT(0.001)QR;RYVEPPEMIGPMRPEQFS(0.002)DEVEPAT(0.998)PEEGEPATQR;RY(0.005)VEPPEMIGPMRPEQFS(0.074)DEVEPAT(0.919)PEEGEPAT(0.002)QR;RY(0.005)VEPPEMIGPMRPEQFS(0.075)DEVEPAT(0.921)PEEGEPATQR;RY(0.002)VEPPEMIGPMRPEQFS(0.028)DEVEPAT(0.968)PEEGEPAT(0.002)QR 91.592 3.23E-10 2986921000 7413.87 6948.78 7755.48 8325.06 6593.62 6321.54 6295.6 7265.84 7158.08 8273.94 TRUE FALSE 7517.687054 7707.4713 5797.513155 7791.127913 7491.782675 7442.57636 7490.157235 6648.56154 7845.645567 6587.706486 1.141169096 1.169977945 0.880050313 1.182676844 1.137236865 1.12976745 1.136990127 1.009237669 1.190952509 1 12.68556056 -11.1854262 4.112196485 0.999952932 1.105297461 0.114530896 0.090211855 65867476.47 2.551550932 29355.61367 0.021282083 6.52E-12 11.1854262 0.105344529 RYVEPPEMIGPMRPEQFSDEVEPATPEEGEPATQR ddPTM_K562_Paclitaxel_30min_R1 1 RYVEPPEMIGPMRPEQFSDEVEPATPEEGEPATQR 35 2 Q9UEU5;Q6NT46;Q13066;Q4V321 Q9UEU5 GAGE2D;GAGE2A;GAGE2B;GAGE13 G antigen 2D;G antigen 2A;G antigen 2B/2C;G antigen 13 0 66.409 1.48E-05 41498000 357.18 451.65 498.33 443.14 361.87 315.8 387.12 440.85 347.21 502.3 FALSE TRUE 362.181622 500.9626744 372.5204282 414.7189838 411.1628205 371.8026959 460.5739991 403.3970408 380.5610719 399.9309843 0.905610308 1.252622813 0.931461784 1.036976379 1.028084436 0.929667144 1.1516337 1.008666637 0.951566862 1 8.643607247 RYVQPPEMIGPMRPEQFS(ph)DEVEPATPEEGEPATQR ddPTM_K562_Paclitaxel_30min_R1 5 RYVQPPEMIGPMRPEQFSDEVEPATPEEGEPATQR 35 2 P0DTW1;P0DSO3;P0CL80-2;Q4V326;P0CL82;P0CL81;P0CL80;O76087 P0DTW1 GAGE12F;GAGE2E;GAGE12I;GAGE12G;GAGE7 G antigen 12F;G antigen 2E;G antigen 12I;G antigen 12G;G antigen 7 1 RY(0.039)VQPPEMIGPMRPEQFS(0.908)DEVEPAT(0.052)PEEGEPAT(0.001)QR;RY(0.001)VQPPEMIGPMRPEQFS(0.996)DEVEPAT(0.004)PEEGEPATQR;RY(0.031)VQPPEMIGPMRPEQFS(0.737)DEVEPAT(0.23)PEEGEPAT(0.002)QR;RY(0.002)VQPPEMIGPMRPEQFS(0.956)DEVEPAT(0.043)PEEGEPATQR;RY(0.009)VQPPEMIGPMRPEQFS(0.702)DEVEPAT(0.289)PEEGEPATQR 76.001 1.00E-06 242010000 1790.44 2172.58 2373.18 2020.32 1769.99 1760.4 1945.52 2103.96 1990.82 2376.86 TRUE FALSE 1815.511684 2409.789632 1774.041358 1890.745718 2011.092604 2072.582223 2314.672264 1925.215465 2182.047156 1892.454627 0.959342252 1.27336719 0.937428741 0.999096988 1.062689998 1.095181989 1.223105817 1.017311294 1.15302482 1 10.886043 -7.24928182 4.405750885 1.107106216 1.049660344 0.05438772 0.104218336 0.659268814 33.12761606 0.035709052 0.033844289 5.63E-08 7.24928182 -0.057445873 RYVQPPEMIGPMRPEQFSDEVEPAT(ph)PEEGEPATQR ddPTM_K562_Paclitaxel_30min_R1 1 RYVQPPEMIGPMRPEQFSDEVEPATPEEGEPATQR 35 2 P0DTW1;P0DSO3;P0CL80-2;Q4V326;P0CL82;P0CL81;P0CL80;O76087 P0DTW1 GAGE12F;GAGE2E;GAGE12I;GAGE12G;GAGE7 G antigen 12F;G antigen 2E;G antigen 12I;G antigen 12G;G antigen 7 1 RY(0.007)VQPPEMIGPMRPEQFS(0.046)DEVEPAT(0.935)PEEGEPAT(0.012)QR 44.757 0.010257 58896000 278.64 254.38 390.02 313.03 354.38 220.33 160.21 296.51 326.9 381.83 TRUE FALSE 282.5418197 282.1540687 291.5546273 292.9536569 402.6525557 259.4024319 190.6090111 271.3196247 358.3002056 304.0128364 0.929374638 0.928099195 0.959020779 0.963622656 1.324459061 0.853261444 0.626976852 0.892461081 1.178569332 1 8.24798843 RYVQPPEMIGPMRPEQFSDEVEPATPEEGEPATQR ddPTM_K562_Paclitaxel_30min_R1 1 RYVQPPEMIGPMRPEQFSDEVEPATPEEGEPATQR 35 2 P0DTW1;P0DSO3;P0CL80-2;Q4V326;P0CL82;P0CL81;P0CL80;O76087 P0DTW1 GAGE12F;GAGE2E;GAGE12I;GAGE12G;GAGE7 G antigen 12F;G antigen 2E;G antigen 12I;G antigen 12G;G antigen 7 0 60.941 0.0002196 14606000 289.17 157.5 312 148.87 258.46 177.49 224.9 187.57 247.76 301.71 FALSE TRUE 293.2192722 174.6963826 233.2317412 139.3221445 293.6666278 208.9653594 267.5736009 171.6347577 271.558455 240.2213364 1.220621268 0.727230917 0.970903521 0.579974063 1.222483532 0.869886758 1.113862761 0.7144859 1.130451021 1 7.908220486 -6.780662958 24.99997953 0.992587134 0.871022867 0.090426789 0.204107359 659.0242688 857047.3792 0.059777135 0.067882718 1.66E-07 6.780662958 -0.121564267 RYVQPPEVIGPMRPEQFS(ph)DEVEPATPEEGEPATQR ddPTM_K562_Paclitaxel_30min_R1 1 RYVQPPEVIGPMRPEQFSDEVEPATPEEGEPATQR 35 2 Q13070;Q13069 Q13070 GAGE6;GAGE5 G antigen 6;G antigen 5 1 RY(0.001)VQPPEVIGPMRPEQFS(0.993)DEVEPAT(0.006)PEEGEPATQR 75.127 1.16E-06 24064000 370.89 387.52 490.99 338.65 335.93 423.48 279.66 374.91 553.43 394.99 TRUE FALSE 376.0836043 429.8307441 367.033502 316.9305047 381.6893533 498.578232 332.7240251 343.0590554 606.5894243 314.4908212 1.195849223 1.366751317 1.167072224 1.007757567 1.213674065 1.585350664 1.057976903 1.090839644 1.9287985 1 8.296874101 -7.024914013 24.66971283 1.329818794 1.185471589 0.065787194 0.269954358 2055.939249 2035775.44 0.087564198 0.087979544 9.44E-08 7.024914013 -0.144347205 RYVQPPEVIGPMRPEQFSDEVEPAT(ph)PEEGEPATQR ddPTM_K562_Paclitaxel_30min_R1 1 RYVQPPEVIGPMRPEQFSDEVEPATPEEGEPATQR 35 2 Q13070;Q13069 Q13070 GAGE6;GAGE5 G antigen 6;G antigen 5 1 RYVQPPEVIGPMRPEQFSDEVEPAT(0.995)PEEGEPAT(0.004)QR 53.665 0.018356 18973000 1109.4 863.25 1183.4 1379.1 1035.5 818.33 943.2 1085.1 998.83 1310.8 TRUE FALSE 1124.935023 957.5025543 884.6360339 1290.650699 1176.552631 963.4493356 1122.167276 992.913982 1094.772084 1043.65824 1.077876817 0.917448373 0.84763 1.236660286 1.127335162 0.923146389 1.075224851 0.951378472 1.048975653 1 10.02743364 -6.21416466 24.99969155 1.048552512 0.94463148 0.188379123 0.098859642 732.3644128 387286.0278 0.027685677 0.047952739 6.11E-07 6.21416466 -0.103921032 RYWEEETVPTTAGAS(ph)PGPPR ddPTM_K562_Paclitaxel_30min_R1 3 RYWEEETVPTTAGASPGPPR 20 1 O15213 O15213 WDR46 WD repeat-containing protein 46 1 RYWEEETVPTT(0.007)AGAS(0.993)PGPPR;RYWEEETVPTTAGAS(1)PGPPR;RYWEEETVPT(0.001)T(0.046)AGAS(0.953)PGPPR 202.21 1.62E-19 505550000 4208.75 4307.94 4708.7 4716.86 3995.05 3982.21 4394.3 5327.04 4321.14 5817 TRUE FALSE 4267.685485 4778.295458 3519.930449 4414.341711 4539.243447 4688.39903 5228.095485 4874.474702 4736.204804 4631.492207 0.92144935 1.03169675 0.759999217 0.953114356 0.980082281 1.012286931 1.128814484 1.052463112 1.022608825 1 12.17726137 -7.050312515 1.952149242 1.054002326 0.913240355 0.424126142 0.070164194 0.322314787 2.454836112 0.026750326 0.028371832 8.91E-08 7.050312515 -0.140761971 S(ph)AASPVVSSMPER ddPTM_K562_Paclitaxel_30min_R1 1 SAASPVVSSMPER 13 0 P18583-6;P18583-2;P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;H7C1M2 P18583-6 SON Protein SON 1 S(0.594)AAS(0.406)PVVSSMPER 170.95 5.39E-05 213100000 1111.5 884.18 1403 1205.4 1139.8 993.89 901.5 1334.8 947.33 1293.5 TRUE FALSE 1127.064429 980.7177625 1048.795298 1128.091039 1295.060057 1170.142437 1072.554919 1221.400408 1038.325279 1029.88399 1.094360569 0.952260422 1.018362561 1.09535739 1.257481493 1.136188588 1.041432753 1.185959215 1.00819635 1 10.00826612 -6.302674625 4.826194777 1.117334103 1.014186591 0.161841872 0.081616667 0.288627614 16.28857707 0.022820757 0.035521071 4.98E-07 6.302674625 -0.103147511 S(ph)ACGNCYLGDAFR ddPTM_K562_Paclitaxel_30min_R1 1 SACGNCYLGDAFR 13 0 Q6FI81-2;Q6FI81-3;Q6FI81 Q6FI81-2 CIAPIN1 Anamorsin 1 S(1)ACGNCYLGDAFR 91.969 0.014905 7767100 631.29 676.67 661.57 735.71 767.26 515.66 409.42 482.34 585.85 526.65 TRUE FALSE 640.1300077 750.551119 494.5484713 688.5248535 871.7738018 607.1050608 487.1053077 441.3622063 642.1235101 419.3184409 1.526596365 1.789931102 1.17941026 1.642009476 2.079025668 1.447837733 1.161659637 1.052570465 1.531350514 1 8.711902469 -7.582986829 4.938080516 1.196829213 1.638043334 0.428205015 0.248110602 0.210696054 10.43217609 0.098610352 0.076169707 2.61E-08 7.582986829 0.441214121 S(ph)AEDELAMR ddPTM_K562_Paclitaxel_30min_R1 1 SAEDELAMR 9 0 A3KFL1;A3KFL5;A3KFL2;Q13868-3;Q13868-2;Q13868 A3KFL1 EXOSC2 Exosome complex component RRP4 1 S(1)AEDELAMR 122.69 0.0021764 7237100 1051.7 980.7 1307.8 1243.2 745.36 723.9 684.5 1113.4 1075.1 1320.9 TRUE FALSE 1066.427045 1087.776143 977.6297153 1163.466716 846.890651 852.2735009 814.3803017 1018.80972 1178.368159 1051.699855 1.014003225 1.034302836 0.929571028 1.106272584 0.805258884 0.810377121 0.77434669 0.968726691 1.120441496 1 10.03850732 -6.760400331 24.99990277 0.899545164 1.015451622 0.192100506 0.105910049 47.49768642 1142788.837 0.034110039 0.041558805 1.74E-07 6.760400331 0.115906458 S(ph)AGALEEGTSEGQLCGR ddPTM_K562_Paclitaxel_30min_R1 2 SAGALEEGTSEGQLCGR 17 0 H7BXQ8;C9J5N7;Q8N2F6-3;Q8N2F6 H7BXQ8 ARMC10 Armadillo repeat-containing protein 10 1 S(1)AGALEEGTSEGQLCGR;S(1)AGALEEGTSEGQLCGR 273.44 7.82E-113 64600000 3974.1 3748.5 6820.3 5427 5160.7 4705.3 3142.1 4481.4 4683.8 3874.8 TRUE FALSE 4029.749661 4157.773907 5098.430913 5078.93651 5863.674711 5539.718889 3738.297072 4100.677098 5133.699918 3085.113633 1.306191648 1.347689065 1.652590964 1.646272104 1.900634923 1.7956288 1.211721031 1.329181867 1.664022959 1 11.59110791 -10.29272912 0.543640845 0.936089527 1.567156555 0.345900577 0.220066807 8.796521132 2.535999692 1.431301811 0.110842774 5.10E-11 10.29272912 0.631067027 S(ph)AGEEEDGPVLTDEQK ddPTM_K562_Paclitaxel_30min_R1 2 SAGEEEDGPVLTDEQK 16 0 F5H7X4;Q66PJ3-7;F5GYV5;H7BZV4;A0A0C4DG62;F8WCT1;Q66PJ3-4;Q66PJ3-3;Q66PJ3-2;Q66PJ3 F5H7X4;Q66PJ3 ARL6IP4 ADP-ribosylation factor-like protein 6-interacting protein 4 1 S(1)AGEEEDGPVLTDEQK;S(1)AGEEEDGPVLTDEQK 323.91 4.84E-257 76948000 4940.9 3640.5 9359.9 5034.7 3806.5 2804.5 3230.8 4998.1 4740.9 6525.9 TRUE FALSE 5010.087844 4037.982101 6996.877483 4711.796876 4325.009745 3301.838698 3843.827434 4573.480208 5196.284628 5195.917998 0.964235357 0.777145079 1.346610452 0.906826643 0.832386067 0.635467823 0.73977831 0.880206387 1.000070561 1 12.34316295 -6.51529378 24.3756817 0.829926896 1.024546217 0.188235593 0.165806814 400.9162311 1288420.578 0.049554607 0.066947384 3.05E-07 6.51529378 0.194619321 S(ph)AHATAPVNIAGSR ddPTM_K562_Paclitaxel_30min_R1 1 SAHATAPVNIAGSR 14 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.997)AHAT(0.003)APVNIAGSR 102.63 0.0057884 9533100 165.02 273.66 238.98 219.02 167.32 202.34 146.27 247.44 146.39 165.06 TRUE FALSE 167.3307891 303.5391243 178.6465433 204.9730375 190.1118168 238.222158 174.0239689 226.4184275 160.4514136 131.4206814 1.273245484 2.309675471 1.359348783 1.559671091 1.446589796 1.812668718 1.32417491 1.722852333 1.220899267 1 7.038048517 -10.10225061 0.284658194 0.790949931 1.70665781 0.279618817 0.298797097 8.221093972 0.963274652 2.126067916 0.397373048 7.90E-11 10.10225061 0.915707879 S(ph)APAS(ph)PTHPGLMSPR ddPTM_K562_Paclitaxel_30min_R1 1 SAPASPTHPGLMSPR 15 0 P85037-2;P85037 P85037-2 FOXK1 Forkhead box protein K1 2 S(0.991)APAS(0.608)PT(0.368)HPGLMS(0.033)PR 81.526 0.010257 0 1251.9 913.51 1448 1201.4 1210.9 1051.3 1097.5 1048 1023.1 1423.6 TRUE FALSE 1269.430462 1013.250111 1082.434491 1124.347581 1375.845081 1237.733294 1305.744896 958.9658586 1121.373326 1133.469539 1.119951105 0.893936781 0.954974487 0.991952181 1.213835074 1.091986376 1.151989402 0.846044667 0.989328154 1 10.1465299 -8.263190228 24.99984258 0.938264815 1.053944657 0.222552063 0.097542652 264.4182297 3775470.534 0.053968296 0.028032033 5.46E-09 8.263190228 0.115679843 S(ph)APASPT(ph)HPGLMSPR ddPTM_K562_Paclitaxel_30min_R1 1 SAPASPTHPGLMSPR 15 0 P85037-2;P85037 P85037-2 FOXK1 Forkhead box protein K1 2 S(1)APAS(0.457)PT(0.526)HPGLMS(0.017)PR 101.01 0.0097546 91540000 990.83 1091.2 1497.6 1050.1 962.04 1237.8 1026.1 1277.2 1002.8 1413.6 TRUE FALSE 1004.704677 1210.340906 1119.512358 982.7512861 1093.086135 1457.30645 1220.797118 1168.693888 1099.123421 1125.507544 0.892668097 1.075373428 0.994673349 0.873162771 0.971193966 1.294799362 1.084663648 1.03837055 0.976558022 1 10.13636001 -7.048020253 24.99865498 1.087344585 0.963876858 0.27070853 0.095929927 547.9509456 285254.0205 0.032697491 0.032698272 8.95E-08 7.048020253 -0.123467727 S(ph)APASPTHPGLMSPR ddPTM_K562_Paclitaxel_30min_R1 1 SAPASPTHPGLMSPR 15 0 P85037-2;P85037 P85037-2 FOXK1 Forkhead box protein K1 1 S(0.987)APAS(0.004)PT(0.009)HPGLMSPR 150.9 3.02E-05 53932000 351.25 565.85 555.22 492.36 618.17 378.31 462.04 557.79 438.05 478.3 TRUE FALSE 356.1685837 627.6314166 415.0478441 460.7822333 702.3752197 445.3979668 549.709678 510.4022579 480.1266598 380.8221975 0.935262141 1.648095675 1.089873035 1.209966846 1.84436523 1.169569342 1.443481188 1.340263938 1.260763325 1 8.572973763 -9.185250999 2.388102348 1.000211919 1.34823317 0.135887475 0.251710417 1.424373632 14.09220735 0.229572679 0.06245327 6.53E-10 9.185250999 0.348021251 S(ph)APTAPTPPPPPPPAT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 SAPTAPTPPPPPPPATPR 18 0 A6NHN7;A6NHB5;Q14202-2;Q14202 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 2 S(0.96)APT(0.036)APT(0.004)PPPPPPPAT(1)PR;S(0.568)APT(0.259)APT(0.174)PPPPPPPAT(1)PR 176.44 3.68E-11 32223000 3112.6 3040.23 3415.4 3426.5 2701.9 2616.4 3097.9 3627.1 2642.91 4037.4 TRUE FALSE 3156.186003 3372.172593 2553.140029 3206.739626 3069.944524 3080.381804 3685.710353 3318.955215 2896.773314 3214.575664 0.981835966 1.049025733 0.794238586 0.997562342 0.955007704 0.958254565 1.146562016 1.032470709 0.901137076 1 11.65041259 -7.572676217 24.99941751 1.026985532 0.954354134 0.124129998 0.082533026 219.9323998 110408.9888 0.031810363 0.024640185 2.67E-08 7.572676217 -0.072631398 S(ph)AS(ph)PHDVDLCLVSPCEFEHR ddPTM_K562_Paclitaxel_30min_R1 1 SASPHDVDLCLVSPCEFEHR 20 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 2 S(1)AS(1)PHDVDLCLVSPCEFEHR 91.238 0.0021911 4712500 366.83 354.04 468.23 416.97 310.47 375.01 318.87 424.87 369.27 705.52 TRUE FALSE 371.9667518 392.6952845 350.0195455 390.2274105 352.7612703 441.5127581 379.3739179 388.7746415 404.7400334 561.7346367 0.662175211 0.699076145 0.623104795 0.694682836 0.627985613 0.785981012 0.675361448 0.692096617 0.720518207 1 9.133744952 -15 0.264392385 3.089906276 0.66252129 0.843874339 0.041018448 71.4167255 0.699480955 81.16200994 0.051424626 1.00E-15 15 -2.427384986 S(ph)AS(ph)PYPSHSLSS(ph)PQR ddPTM_K562_Paclitaxel_30min_R1 3 SASPYPSHSLSSPQR 15 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 3 S(1)AS(0.999)PY(0.001)PS(0.043)HS(0.011)LS(0.294)S(0.652)PQR;S(0.999)AS(0.997)PY(0.004)PS(0.001)HS(0.002)LS(0.085)S(0.912)PQR;S(0.982)AS(0.757)PY(0.188)PS(0.068)HS(0.008)LS(0.016)S(0.982)PQR 114.56 0.0014891 71457000 6561.7 5286.99 8080.1 6380.9 5320.9 5531.2 4864.19 6771.6 5055.42 7625.1 TRUE FALSE 6653.584045 5864.241448 6040.178822 5971.657634 6045.696664 6512.080658 5787.14466 6196.310313 5541.015679 6071.100434 1.095943662 0.965927267 0.994906753 0.983620301 0.995815623 1.072635963 0.953228286 1.020623918 0.912687204 1 12.56774232 -5.252677284 24.42882268 0.991223962 1.095943737 0.392345852 0.039891566 872.4099192 2432219.074 0.009506577 0.109246016 5.59E-06 5.252677284 0.104719775 S(ph)ASADNLTLPR ddPTM_K562_Paclitaxel_30min_R1 2 SASADNLTLPR 11 0 Q8ND76-3;Q8ND76;Q8ND76-2 Q8ND76-3 CCNY Cyclin-Y 1 S(0.514)AS(0.486)ADNLT(0.001)LPR;S(0.815)AS(0.185)ADNLTLPR 156 0.00066628 264640000 1943.42 1501.41 2556.3 2355.5 1745.22 1705.79 1881.89 2093.79 1883.71 2276.9 TRUE FALSE 1970.633876 1665.339021 1910.930449 2204.428773 1982.948511 2008.287906 2238.968803 1915.90947 2064.648762 1812.86653 1.087026454 0.918621969 1.054093292 1.215990662 1.093819362 1.107796891 1.235043378 1.056839783 1.138886249 1 10.824057 -6.004891751 24.71585184 1.127258172 0.998707545 0.289373464 0.075160185 193.2848373 976605.5055 0.018547247 0.037022433 9.89E-07 6.004891751 -0.128550627 S(ph)ASASHQADIK ddPTM_K562_Paclitaxel_30min_R1 2 SASASHQADIK 11 0 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 S(0.825)AS(0.116)AS(0.059)HQADIK;S(0.679)AS(0.16)AS(0.16)HQADIK 140.33 0.00064446 79776000 8149.2 6914.3 12860.6 7472.8 6026.3 5396.9 4983 8040 5217 10089.2 TRUE FALSE 8263.313942 7669.226657 9613.782472 6993.528055 6847.184086 6353.964439 5928.498237 7356.951816 5718.11616 8033.015502 1.02866899 0.95471329 1.196783757 0.870598103 0.85238029 0.790981225 0.738016531 0.915839365 0.711826855 1 12.97172595 -6.43631365 6.847950042 0.826801411 1.049113582 0.52536406 0.096004484 0.19025059 12.81615449 0.025804802 0.038301632 3.66E-07 6.43631365 0.222312172 S(ph)ASPHDVDLCLVSPCEFEHR ddPTM_K562_Paclitaxel_30min_R1 1 SASPHDVDLCLVSPCEFEHR 20 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 S(0.581)AS(0.419)PHDVDLCLVSPCEFEHR 164.46 1.21E-12 111110000 1284 1168.6 1488.9 1262.1 1057.3 1262.4 1111.6 1682.6 1207.4 1547.6 TRUE FALSE 1301.979961 1296.1917 1113.008781 1181.154555 1201.32216 1486.268915 1322.520297 1539.652628 1323.376165 1232.198271 1.056631869 1.051934361 0.903270851 0.958575079 0.974942255 1.206192989 1.073301537 1.249516952 1.073996123 1 10.2670187 -7.245733498 24.75622887 1.13324008 0.986102407 0.411099927 0.077941939 645.8196628 1017966.962 0.025141638 0.025060343 5.68E-08 7.245733498 -0.147137673 S(ph)ASPHDVDLCLVSPCEFEHRK ddPTM_K562_Paclitaxel_30min_R1 2 SASPHDVDLCLVSPCEFEHRK 21 1 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 S(0.5)AS(0.5)PHDVDLCLVSPCEFEHRK;S(0.5)AS(0.5)PHDVDLCLVSPCEFEHRK 109.04 5.03E-05 180246000 5942.6 4569.2 9630.8 6203.1 5283.6 4502.1 4155.5 6529.9 6844.6 7538.3 TRUE FALSE 6025.814734 5068.080708 7199.385428 5805.26093 6003.315772 5300.484222 4943.984432 5975.144237 7502.054412 6001.990322 1.003969419 0.844400013 1.199499673 0.967222641 1.000220835 0.883121088 0.823724159 0.995527136 1.249927776 1 12.55122528 -8.552660715 18.76997576 1.1242251 0.960006847 0.244888626 0.114035575 19.407267 12226.33109 0.076791856 0.029031537 2.80E-09 8.552660715 -0.164218253 S(ph)ASPY(ph)PSHSLS(ph)SPQR ddPTM_K562_Paclitaxel_30min_R1 1 SASPYPSHSLSSPQR 15 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 3 S(0.995)AS(0.332)PY(0.663)PS(0.064)HS(0.003)LS(0.629)S(0.313)PQR 117.13 0.0018369 24750000 3468.3 2832.9 4105.6 3448.8 2974.4 2885.7 2007.5 3624.3 2601.8 3777.1 TRUE FALSE 3516.866901 3142.205602 3069.090503 3227.609404 3379.563637 3397.438378 2388.412645 3316.393093 2851.714515 3007.324947 1.169433621 1.044850709 1.020538371 1.073249303 1.123777343 1.129721077 0.794198395 1.102771783 0.948256196 1 11.55426505 S(ph)ASPYHGFTIVNR ddPTM_K562_Paclitaxel_30min_R1 1 SASPYHGFTIVNR 13 0 Q9NPI6-2;Q9NPI6;A0A087WXD0;A0A087WVE6;A0A087WT55 Q9NPI6-2 DCP1A mRNA-decapping enzyme 1A 1 S(0.878)AS(0.12)PY(0.002)HGFTIVNR 88.108 0.01406 5728600 2130.3 2224.6 2433.3 1910.5 1605.9 1951.5 2158.4 2032.3 1626.7 2598.2 TRUE FALSE 2160.130773 2467.489351 1818.98332 1787.969081 1824.650768 2297.571125 2567.945132 1859.64343 1782.951803 2068.685414 1.044204575 1.192781336 0.879294313 0.864302068 0.882033951 1.110643073 1.241341538 0.89894936 0.861876722 1 11.01449856 -5.757081031 24.99923277 0.971878324 1.118492947 0.196005337 0.122200628 197.7877355 1134458.717 0.034652691 0.085238159 1.75E-06 5.757081031 0.146614623 S(ph)ASQGALTSPSVSFSNHR ddPTM_K562_Paclitaxel_30min_R1 1 SASQGALTSPSVSFSNHR 18 0 Q5T5U3;A0A087WW76;A0A452Q6Z5;E7ESW5;A0A1B0GV73;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 S(0.803)AS(0.197)QGALTSPSVSFSNHR 62.781 0.029687 12178000 808.59 612.86 1354.2 808.61 646.88 749.71 592.94 845.13 1230.9 1121.1 TRUE FALSE 819.9127547 679.7741274 1012.315461 756.7493738 734.9960078 882.660542 705.4472696 773.3309314 1349.133445 892.6192046 0.91854707 0.761549969 1.134095543 0.847785226 0.823414961 0.988843325 0.790311553 0.866361521 1.511432241 1 9.801901036 -8.73548975 24.99983723 1.255716232 0.891290835 0.475655832 0.15301829 150.2192628 144721.776 0.095904923 0.036222248 1.84E-09 8.73548975 -0.364425397 S(ph)ATASPQQPQAQQR ddPTM_K562_Paclitaxel_30min_R1 1 SATASPQQPQAQQR 14 0 Q9BX66-4;Q9BX66-9;Q9BX66-8;Q9BX66-10;Q9BX66-6;Q9BX66-5;Q9BX66-12;A0A0U1RQI5 Q9BX66-4 SORBS1 Sorbin and SH3 domain-containing protein 1 1 S(0.791)AT(0.203)AS(0.005)PQQPQAQQR 148.85 4.42E-05 4389800 442.69 514.58 568.77 614.9 403.87 279.47 345.55 365.67 228.63 476.64 TRUE FALSE 448.8890258 570.7635846 425.176979 575.4630662 458.8839316 329.0300805 411.1163086 334.6040511 250.590933 379.5005064 1.182841705 1.503986358 1.120359451 1.516369693 1.209178707 0.867008278 1.083308986 0.881695928 0.660317783 1 8.567958 -7.146337333 3.890005351 0.902295719 1.331668903 0.643327948 0.153573188 0.150545879 4.010265448 0.050884026 0.050965649 7.14E-08 7.146337333 0.429373183 S(ph)CILQNYNR ddPTM_K562_Paclitaxel_30min_R1 1 SCILQNYNR 9 0 C9IZY4 C9IZY4 VEPH1 1 S(1)CILQNYNR 79.474 0.025856 6973000 112.61 155.03 0 115.99 61.51 110.86 0 0 0 133.3 TRUE FALSE 114.1868874 171.9566997 0 108.5509206 69.88870337 130.5194644 0 0 0 106.1333868 1.075880935 1.620194218 0 1.022778259 0.658498758 1.229768203 0 0 0 1 6.729734752 -7.768427009 24.9971553 0.166666559 0.914674211 0.321022557 0.481118506 183.6005255 656794.657 0.194794947 0.134530522 1.70E-08 7.768427009 0.748007651 S(ph)CPELTSGPR ddPTM_K562_Paclitaxel_30min_R1 1 SCPELTSGPR 10 0 Q13111;Q13111-3;Q13111-2 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 S(1)CPELTSGPR 100.09 0.0098582 13104000 213.03 277.66 254.25 280.9 189.43 93.183 213.61 225.79 218.1 244.96 TRUE FALSE 216.0130773 307.9758578 190.061443 262.8843313 215.2335731 109.7076967 254.1413824 206.6077302 239.0494795 195.0370175 1.107549121 1.579063614 0.974489076 1.347868905 1.103552422 0.562496792 1.303041779 1.059325726 1.225662095 1 7.60760416 -6.98058942 14.77845478 1.026673533 1.252014539 0.167580608 0.233934471 4.203110333 3195.513378 0.071839291 0.081278181 1.05E-07 6.98058942 0.225341006 S(ph)CPMAMT(ph)SGQ ddPTM_K562_Paclitaxel_30min_R1 1 SCPMAMTSGQ 10 0 H0YK09 H0YK09 DET1 2 S(0.998)CPMAMT(0.559)S(0.443)GQ 55.04 0.028861 5867800 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 S(ph)CSASCVPHGAK ddPTM_K562_Paclitaxel_30min_R1 1 SCSASCVPHGAK 12 0 P00519-2;P00519 P00519-2 ABL1 Tyrosine-protein kinase ABL1 1 S(0.668)CS(0.329)AS(0.003)CVPHGAK 94.781 0.0099426 58951000 5938.9 5113.8 8581.5 5892.4 4118.1 3829.2 4099.8 6090 3546.8 7607.9 TRUE FALSE 6022.062923 5672.141978 6414.99419 5514.487837 4679.05494 4508.254855 4877.715648 5572.616487 3887.485988 6057.405804 0.994165344 0.936397884 1.059033256 0.910371208 0.772451952 0.744255049 0.805248287 0.919967502 0.641774072 1 12.56448435 -6.55887389 4.507304029 0.806967694 0.990600671 0.426526533 0.095035863 0.17981452 8.410266441 0.026900814 0.036230558 2.76E-07 6.55887389 0.183632977 S(ph)CSSLAVVEK ddPTM_K562_Paclitaxel_30min_R1 1 SCSSLAVVEK 10 0 Q8IW36 Q8IW36 ZNF695 Zinc finger protein 695 1 S(0.882)CS(0.099)S(0.019)LAVVEK 116.84 0.0026423 7516300 0 0 127.65 0 56.576 55.891 0 0 0 127.96 TRUE FALSE 0 0 95.42317874 0 64.28260904 65.8024841 0 0 0 101.8816818 0 0 0.936607809 0 0.630953552 0.645871593 0 0 0 1 6.670750869 -11.2343368 4.821949682 1.000149939 0.260403877 0.307172141 0.339117274 0.000562505 8.93E-05 0.33704087 0.08172804 5.83E-12 11.2343368 -0.739746062 S(ph)CTPS(ph)PDQISHR ddPTM_K562_Paclitaxel_30min_R1 1 SCTPSPDQISHR 12 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 2 S(0.712)CT(0.289)PS(0.652)PDQIS(0.346)HR 120.9 0.014771 56254000 3625.3 3065.1 5043.8 4245.7 3192.9 2858.6 2955.7 3527.3 3163.3 4065.3 TRUE FALSE 3676.065385 3399.757984 3770.430309 3973.399805 3627.827036 3365.532573 3516.528645 3227.633848 3467.149099 3236.789629 1.13571341 1.050348763 1.164867273 1.227574313 1.120810263 1.039774888 1.086424837 0.997171339 1.07116912 1 11.66034789 -7.201886498 4.340611534 1.041318901 1.142803164 0.528148989 0.047959367 0.199940727 7.760223813 0.017357646 0.017070732 6.28E-08 7.201886498 0.101484262 S(ph)DKSPDLAPTPAPQSTPR ddPTM_K562_Paclitaxel_30min_R1 1 SDKSPDLAPTPAPQSTPR 18 1 F8WAE5;Q9BY44-2;Q9BY44-4;Q9BY44-3;Q9BY44 F8WAE5 EIF2A "Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed" 1 S(0.5)DKS(0.5)PDLAPTPAPQSTPR 91.964 0.0014659 367560000 4518.8 3514.8 7434.9 4355.8 3374.5 3030.2 3215.9 4463.3 3831.2 5656.6 TRUE FALSE 4582.077142 3898.55775 5557.867541 4076.438484 3834.164031 3567.563424 3826.100237 4084.114806 4199.203878 4503.781815 1.017384352 0.865618698 1.234044581 0.905114557 0.851320998 0.792126166 0.849530549 0.906818974 0.932372848 1 12.13692122 -6.496738476 24.92822992 0.87733724 1.029660075 0.318901731 0.09822857 818.7698427 780806.3298 0.027288337 0.04031376 3.19E-07 6.496738476 0.152322835 S(ph)DSFENPVLQQHFR ddPTM_K562_Paclitaxel_30min_R1 1 SDSFENPVLQQHFR 14 0 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 1 S(0.563)DS(0.437)FENPVLQQHFR 126.63 0.00025813 36179000 2573.3 2551.2 4030.6 2816.8 2623.4 2613.6 1665 2570.8 878.31 2281.5 TRUE FALSE 2609.334139 2829.748644 3013.02518 2636.143056 2980.751495 3077.085263 1980.925058 2352.394494 962.6755999 1816.529048 1.436439534 1.557777811 1.658671621 1.451197854 1.640904944 1.693936724 1.090500072 1.294994152 0.52995332 1 10.82696872 -8.206711446 1.508821871 0.829213105 1.569447216 0.702983218 0.190537231 0.218323242 0.903989088 0.139175024 0.05593571 6.21E-09 8.206711446 0.740234111 S(ph)DSLLSFR ddPTM_K562_Paclitaxel_30min_R1 3 SDSLLSFR 8 0 Q00587-2;Q00587 Q00587-2 CDC42EP1 Cdc42 effector protein 1 1 S(0.734)DS(0.18)LLS(0.087)FR;S(0.571)DS(0.429)LLSFR;S(0.628)DS(0.372)LLSFR 152.06 5.72E-06 26811300 5343.3 4889.4 5968.6 4891.9 3874.7 4076.7 5055.9 6420.6 4297.8 8292.5 TRUE FALSE 5418.122685 5423.241227 4461.753111 4578.155429 4402.499739 4799.645505 6015.230631 5875.129954 4710.622893 6602.483948 0.820618835 0.82139408 0.675768869 0.693398949 0.666794463 0.726945426 0.911055699 0.88983631 0.713462226 1 12.68879317 -7.751570684 24.74492033 0.869408251 0.730550801 0.420778627 0.082673536 189.3870576 474872.9303 0.032688821 0.024999621 1.77E-08 7.751570684 -0.13885745 S(ph)DVWS(ph)FGILLMEIVT(ph)Y(ph)GR ddPTM_K562_Paclitaxel_30min_R1 1 SDVWSFGILLMEIVTYGR 18 0 H0Y3C5;J3KPD6;P08631-3;P08631-2;P08631-4;P08631 H0Y3C5 HCK Non-specific protein-tyrosine kinase;Tyrosine-protein kinase HCK 4 S(1)DVWS(1)FGILLMEIVT(1)Y(1)GR 59.005 0.016007 1013800 0 72.874 0 0 0 0 0 0 0 124.97 TRUE FALSE 0 80.83062976 0 0 0 0 0 0 0 99.5010454 0 0.812359603 0 0 0 0 0 0 0 1 6.636639778 -11.22678288 3.895035016 1.000876166 0.095571718 0.559239478 0.242251212 908472106.4 1586542465 9659553.549 0.062143383 5.93E-12 11.22678288 -0.905304448 S(ph)EAQCKNFY(ph)FNY(ph)KRR ddPTM_K562_Paclitaxel_30min_R1 1 SEAQCKNFYFNYKRR 15 3 O75376-2;O75376;A0A088AWL3;O75376-3 O75376-2 NCOR1 Nuclear receptor corepressor 1 3 S(1)EAQCKNFY(1)FNY(1)KRR 49.298 0.031135 0 727.66 892.55 1299.5 883.7 918.17 746.87 837.88 815.39 1187.4 1075.5 TRUE FALSE 737.849485 990.0016274 971.425153 827.0234373 1043.240299 879.3169079 996.863356 746.11753 1301.455075 856.3125096 0.861659122 1.156121879 1.13442831 0.965796281 1.21829389 1.026864489 1.164134991 0.871314528 1.519836579 1 9.741993591 -5.254846933 24.12461744 1.110975168 0.861658933 0.171801642 0.16792958 811.4596988 2969351.33 0.038014381 0.349554838 5.56E-06 5.254846933 -0.249316235 S(ph)EGSPVLPHEPAK ddPTM_K562_Paclitaxel_30min_R1 1 SEGSPVLPHEPAK 13 0 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 S(0.615)EGS(0.385)PVLPHEPAK 87.519 0.014727 58669000 5189.6 4555.7 9328.9 5203.6 4427.2 4301.7 3929.5 5592.3 3555.8 6102.4 TRUE FALSE 5262.270411 5053.106732 6973.703817 4869.864386 5030.259593 5064.546096 4675.102112 5117.199209 3897.350478 4858.72753 1.083055261 1.040006195 1.435294277 1.002292134 1.035303907 1.04236059 0.962207097 1.053197401 0.802133985 1 12.24636282 -6.476472648 24.99726452 0.990043867 1.179388392 0.377821753 0.117963259 460.7524877 248190.1869 0.032787736 0.048630234 3.34E-07 6.476472648 0.189344524 S(ph)ESPDHMVSQYQQALEEIER ddPTM_K562_Paclitaxel_30min_R1 3 SESPDHMVSQYQQALEEIER 20 0 Q14149;H0YHQ4;H0YIR5 Q14149 MORC3 MORC family CW-type zinc finger protein 3 1 S(0.5)ES(0.5)PDHMVSQYQQALEEIER;S(0.934)ES(0.066)PDHMVSQYQQALEEIER;S(0.88)ES(0.12)PDHMVSQYQQALEEIER 214.34 1.18E-29 39412900 3237.78 3256.02 3937.4 3404.03 3237.65 3104.47 3201.9 3777.15 2571.73 4209.71 TRUE FALSE 3283.118909 3611.523275 2943.354673 3185.710752 3678.672744 3655.004166 3809.44381 3456.257531 2818.756157 3351.768791 0.979518312 1.077497733 0.878149674 0.950456595 1.097531773 1.090470254 1.136547312 1.031174209 0.840975715 1 11.71070692 -4.951369748 15.06978196 1.016169472 0.78142825 0.008327782 0.09216263 7809216.147 68262278 0.024253637 52164828.31 1.12E-05 4.951369748 -0.234741222 S(ph)ESPPAELPSLR ddPTM_K562_Paclitaxel_30min_R1 1 SESPPAELPSLR 12 0 H7C1L9;G5E9G6;Q14669;Q14669-2;Q14669-3 H7C1L9 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 S(0.515)ES(0.485)PPAELPSLR 124.21 0.0017614 73166000 1843.2 1508.1 2723.4 2286 1602.5 1661.3 1695.2 2146.1 1191 2297.7 TRUE FALSE 1869.010487 1672.759458 2035.843987 2139.386192 1820.787631 1955.908229 2016.85535 1963.775409 1305.400872 1829.427479 1.021636828 0.914362268 1.112831206 1.169429352 0.995277294 1.069136794 1.102451654 1.073437145 0.713557048 1 10.83717651 -8.735389865 24.99894946 0.856778443 1.057972594 0.431785897 0.092018474 173.1627603 166180.033 0.061156736 0.023098601 1.84E-09 8.735389865 0.201194151 S(ph)FDYNYR ddPTM_K562_Paclitaxel_30min_R1 4 SFDYNYR 7 0 O75494-6;O75494-3;Q5JRI1;O75494-5;O75494-4;O75494-2;O75494 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 S(0.999)FDYNY(0.001)R;S(0.952)FDY(0.002)NY(0.046)R;S(0.994)FDYNY(0.006)R;S(0.597)FDY(0.001)NY(0.402)R 112.75 0.0041906 423445000 5545.3 5114 7455.3 6287.2 5108.6 4847 5368.6 6278.7 2777.99 7329.7 TRUE FALSE 5622.951309 5672.363814 5573.117309 5883.967132 5804.477809 5706.547395 6387.263824 5745.285245 3044.828352 5835.903117 0.963510051 0.971977036 0.954970841 1.008235917 0.994615177 0.977834498 1.094477358 0.984472348 0.52174073 1 12.51074022 -8.574831875 24.99949034 0.758280788 0.99583751 0.404509688 0.11308094 88.12630734 42404.12165 0.069073587 0.026107367 2.66E-09 8.574831875 0.237556722 S(ph)FDYNYRR ddPTM_K562_Paclitaxel_30min_R1 3 SFDYNYRR 8 1 O75494-6;O75494-3;Q5JRI1;O75494-5;O75494-4;O75494-2;O75494 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 S(0.95)FDY(0.001)NY(0.049)RR;S(0.992)FDYNY(0.008)RR;S(0.997)FDYNY(0.003)RR 80.706 0.018567 421780000 9116.1 10240 13587.7 11471.7 9733 9287.8 9752.1 11462.6 8208.7 12779.7 TRUE FALSE 9243.753526 11358.03783 10157.31708 10735.95651 11058.79938 10934.86092 11602.51007 10488.78058 8997.182312 10175.19013 0.90846003 1.116248216 0.998243469 1.055111145 1.086839582 1.074659126 1.140274523 1.030819125 0.88422744 1 13.31276813 -8.600131771 6.971429333 0.944324531 1.058561682 0.306066607 0.066320172 0.249548481 18.44144928 0.043638305 0.016175886 2.51E-09 8.600131771 0.114237151 S(ph)FNDFR ddPTM_K562_Paclitaxel_30min_R1 3 SFNDFR 6 0 P42356 P42356 PI4KA Phosphatidylinositol 4-kinase alpha 1 S(1)FNDFR;S(1)FNDFR;S(1)FNDFR 101.46 0.019623 69124000 18302.8 17110.2 23872.3 20377.5 17567.3 17816.8 16708.1 20989.1 16047.7 21618.2 TRUE FALSE 18559.09567 18978.3495 17845.44262 19070.57836 19960.26368 20976.35932 19878.37475 19205.94495 17589.15329 17212.39897 1.078239919 1.102597583 1.036778351 1.107955863 1.159644493 1.218677266 1.154886938 1.115820344 1.021888542 1 14.07116057 -8.791697778 3.943098186 1.002267782 1.124116183 0.47926438 0.046512494 0.209461384 6.560761722 0.049281999 0.013725196 1.62E-09 8.791697778 0.121848401 S(ph)FS(ph)FNPHPGY(ph)LTPSMK ddPTM_K562_Paclitaxel_30min_R1 1 SFSFNPHPGYLTPSMK 16 0 Q9ULE4 Q9ULE4 FAM184B Protein FAM184B 3 S(1)FS(1)FNPHPGY(1)LTPSMK 73.166 0.018159 0 622.41 559.23 649.41 634.83 391.26 481.09 528.47 687.84 379.48 419.89 TRUE FALSE 631.1256603 620.2886226 485.4584137 594.1148452 444.5562361 566.4045567 628.7444237 629.4036986 415.9307496 334.3161875 1.887810653 1.855395119 1.452093652 1.777104631 1.329747864 1.694218162 1.880687945 1.882659955 1.244123872 1 8.385069401 -8.930074898 4.601694166 1.00488583 1.707242408 0.642890122 0.182096935 0.118792074 4.52231478 0.183328496 0.047984929 1.17E-09 8.930074898 0.702356578 S(ph)FS(ph)LRS(ph)SLT(ph)GHKR ddPTM_K562_Paclitaxel_30min_R1 1 SFSLRSSLTGHKR 13 2 Q6PG37 Q6PG37 ZNF790 Zinc finger protein 790 4 S(1)FS(0.999)LRS(0.959)S(0.042)LT(1)GHKR 82.925 0.011614 118840000 763.77 654.16 1187 1079.3 1012.5 983.03 537.28 620.75 826.35 677.87 TRUE FALSE 774.4651364 725.583401 887.3271694 1010.078529 1150.419642 1157.356568 639.2260752 568.0134129 905.7246097 539.7197219 1.434939479 1.344370738 1.64405178 1.871487159 2.131513071 2.144365902 1.184366717 1.052422933 1.678138806 1 9.076066596 -7.787743845 24.99668418 1.233100345 1.759254926 0.437268483 0.296222632 246.9772658 234695.8383 0.137138408 0.092490211 1.63E-08 7.787743845 0.526154581 S(ph)FSADNFIGIQR ddPTM_K562_Paclitaxel_30min_R1 1 SFSADNFIGIQR 12 0 Q8N7R7-3;Q8N7R7-2;Q8N7R7 Q8N7R7-3 CCNYL1 Cyclin-Y-like protein 1 1 S(0.938)FS(0.062)ADNFIGIQR 111.88 1.09E-05 0 716.02 689.96 797.42 732.83 655.78 574.47 561.19 876.78 642.57 724.39 TRUE FALSE 726.0464891 765.2921661 596.1014586 685.8295638 745.1083384 676.3441885 667.6728729 802.2920663 704.2917196 576.7589204 1.258838769 1.32688397 1.033536609 1.189109591 1.291888711 1.172663594 1.157629036 1.391035384 1.221119769 1 9.171824602 -12.34578051 1.866776232 4.39E-05 1.22620191 0.343046617 0.094221584 1344883.263 150246.6873 5661965.694 0.025583483 4.51E-13 12.34578051 1.226158036 S(ph)FSKEVEER ddPTM_K562_Paclitaxel_30min_R1 1 SFSKEVEER 9 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 S(0.998)FS(0.002)KEVEER 104.59 0.026189 400880000 1799.8 1675.8 3667.7 2027.1 1434.2 1498.7 1014.6 1987.6 1702.4 2405.8 TRUE FALSE 1825.002753 1858.769511 2741.743773 1897.090879 1629.562321 1764.473402 1207.115053 1818.740974 1865.923127 1915.496639 0.952756959 0.970385159 1.431348778 0.990391129 0.850725753 0.921157138 0.630183853 0.949487948 0.97411976 1 10.90350278 -6.519796437 21.62584389 0.878134699 1.121299681 0.306561441 0.155096633 25.37018165 178003.9073 0.046503175 0.061544852 3.02E-07 6.519796437 0.243164982 S(ph)FSPLQPGQAPTGR ddPTM_K562_Paclitaxel_30min_R1 1 SFSPLQPGQAPTGR 14 0 H7C152;Q7Z3C6-2;Q7Z3C6;H7C1G6 H7C152 ATG9A Autophagy-related protein 9A 1 S(0.998)FS(0.002)PLQPGQAPTGR 113.43 0.002735 34252000 1525.4 1350.8 1762.2 1626.2 1124.8 1439.5 1399 1520.7 2097.5 1456.4 TRUE FALSE 1546.760306 1498.284912 1317.310815 1521.902811 1278.016803 1694.775113 1664.452947 1391.507043 2298.974247 1159.584881 1.333891406 1.292087313 1.13601931 1.312454859 1.102133034 1.461536056 1.4353869 1.200004473 1.982583841 1 10.17939271 -7.282801867 24.35793689 1.429620345 1.237239949 0.120037138 0.243027596 1210.571166 1380312.149 0.080581248 0.071137318 5.21E-08 7.282801867 -0.192380397 S(ph)FSPTMK ddPTM_K562_Paclitaxel_30min_R1 1 SFSPTMK 7 0 A3KN83-4;A3KN83-3;A3KN83-2;A3KN83 A3KN83-4 SBNO1 Protein strawberry notch homolog 1 1 S(0.997)FS(0.002)PT(0.001)MK 90.601 0.01921 41722000 4588.8 4204.7 8203.3 5570.3 3921.1 3744.1 3589.5 5444 3876.7 6063.5 TRUE FALSE 4653.057358 4663.783365 6132.275458 5213.04589 4455.220205 4408.063565 4270.588887 4981.49822 4249.074357 4827.755372 0.963813822 0.96603556 1.270212549 1.079807382 0.922834705 0.913066886 0.884590986 1.031845617 0.880134561 1 12.23713686 -6.75881735 24.92029638 0.936346079 1.076846887 0.333373563 0.090658402 78.45179781 745613.959 0.028421848 0.035012815 1.74E-07 6.75881735 0.140500808 S(ph)FTGGLGQLVVPSK ddPTM_K562_Paclitaxel_30min_R1 2 SFTGGLGQLVVPSK 14 0 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 S(0.966)FT(0.034)GGLGQLVVPSK;S(0.5)FT(0.5)GGLGQLVVPSK 207.92 5.86E-13 178707000 11182.9 8633.5 15635.5 10451.8 7197.6 8429.6 8967.1 11958.8 8207 17243 TRUE FALSE 11339.4951 9576.134727 11688.12465 9781.468329 8178.034976 9924.471203 10668.56041 10942.8253 8995.31902 13728.86714 0.82596 0.697518203 0.851353905 0.712474542 0.595681705 0.72289076 0.77708964 0.79706688 0.655212038 1 13.74492496 -11.10030707 4.87135408 1.000010893 0.73705349 0.529432724 0.074313662 112377117.8 7.712948973 13730.58986 0.018293995 7.94E-12 11.10030707 -0.262957403 S(ph)FVS(ph)KMS(ph)PLDMKDGFLAFQTS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SFVSKMSPLDMKDGFLAFQTSR 22 2 I3L3V5;I3L3S0;Q9Y5R8 I3L3V5 TRAPPC1 Trafficking protein particle complex subunit 1 4 S(1)FVS(1)KMS(1)PLDMKDGFLAFQT(0.227)S(0.773)R 45.707 0.029642 12191000 0 0 0 128.67 122.15 221.48 0 0 0 129.92 TRUE FALSE 0 0 0 120.4176821 138.788898 260.7563683 0 0 0 103.4422327 0 0 0 1.164105598 1.341704393 2.520792151 0 0 0 1 6.692681509 -6.248542776 23.39752605 0.872595945 2.78E-07 0.226182459 0.729526859 569.0750118 1032432.081 0.2224137 0.381514394 5.64E-07 6.248542776 -0.872595667 S(ph)GAPRAIAPTPGAMLS(ph)GRS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SGAPRAIAPTPGAMLSGRSR 20 2 A0A494C071 A0A494C071 3 S(1)GAPRAIAPT(0.229)PGAMLS(0.794)GRS(0.977)R 63.225 0.01891 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 S(ph)GAQASSTPLSPTR ddPTM_K562_Paclitaxel_30min_R1 2 SGAQASSTPLSPTR 14 0 P02545-6;P02545;P02545-3;Q3BDU5;P02545-2 P02545-6;Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C 1 S(0.996)GAQASS(0.001)T(0.001)PLS(0.001)PT(0.002)R;S(1)GAQASSTPLSPTR 101.71 0.0062503 26528100 1213.2 921.95 1720.11 1266.93 989.32 1127.34 1322.75 1497.53 1283.56 1400.98 TRUE FALSE 1230.188543 1022.611619 1285.846956 1185.67478 1124.082133 1327.25792 1573.734907 1370.305479 1406.851673 1115.459507 1.102853609 0.916762655 1.152750905 1.062947398 1.007730111 1.189875484 1.410840015 1.228467256 1.261230609 1 10.12342243 -7.406141041 4.832444605 1.250936278 1.048878337 0.361607106 0.110807718 0.215726657 7.660097571 0.038322757 0.033381016 3.93E-08 7.406141041 -0.20205794 S(ph)GDEMIFDPTMSK ddPTM_K562_Paclitaxel_30min_R1 1 SGDEMIFDPTMSK 13 0 P20042 P20042 EIF2S2 Eukaryotic translation initiation factor 2 subunit 2 1 S(1)GDEMIFDPTMSK 162.37 0.0007126 13292000 2024 1745.5 4163.9 2791.2 1647.3 1668.2 1400.3 2183 2240 2681.2 TRUE FALSE 2052.342245 1936.079593 3112.671947 2612.184925 1871.690149 1964.031847 1665.999615 1997.540524 2455.162009 2134.769968 0.961388007 0.906926564 1.458083069 1.223637658 0.876764324 0.920020366 0.780411773 0.935716988 1.1500827 1 11.05986491 -6.765576857 24.99999444 0.931256865 1.143936831 0.245658116 0.165232647 153.1055386 925114.0732 0.054368833 0.063883102 1.72E-07 6.765576857 0.212679966 S(ph)GEGEVSGLMR ddPTM_K562_Paclitaxel_30min_R1 4 SGEGEVSGLMR 11 0 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 S(1)GEGEVSGLMR;S(1)GEGEVSGLMR;S(1)GEGEVSGLMR;S(1)GEGEVSGLMR 190.78 9.91E-05 308089000 1922.09 2219.28 3928.19 2721.07 2340.6 2042.3 1884.92 2425.02 2100.07 2832.59 TRUE FALSE 1949.00519 2461.588496 2936.469851 2546.552749 2659.429347 2404.47323 2242.57373 2218.999414 2301.791107 2255.306603 0.864186354 1.091465121 1.302026894 1.129138161 1.179187496 1.066140287 0.994354261 0.98390144 1.020611168 1 11.13910786 -7.571643464 3.895769551 0.999152457 1.123673703 0.211142672 0.10207816 0.352057044 11.24475285 0.042674488 0.033087692 2.68E-08 7.571643464 0.124521247 S(ph)GSTESLNPRPQTTISPADLHGMWYPTVR ddPTM_K562_Paclitaxel_30min_R1 1 SGSTESLNPRPQTTISPADLHGMWYPTVR 29 1 Q96JB2 Q96JB2 COG3 Conserved oligomeric Golgi complex subunit 3 1 S(0.461)GS(0.395)T(0.118)ES(0.014)LNPRPQT(0.005)T(0.005)IS(0.001)PADLHGMWYPTVR 56.292 0.0026662 15986000 439.08 367.61 642.36 597.94 357.66 404.32 372.62 306.81 387.28 640 TRUE FALSE 445.2284747 407.746903 480.1882734 559.5908047 406.3793472 476.0204751 443.3226998 280.7445755 424.4799744 509.5676487 0.873737718 0.800182084 0.942344504 1.098167841 0.797498327 0.934165417 0.869997734 0.550946623 0.833019866 1 8.993129877 -8.019535119 24.44727686 0.757284376 0.907526839 0.111472857 0.130483239 898.5263715 1124458.817 0.058822861 0.034635714 9.56E-09 8.019535119 0.150242463 S(ph)GTNSPPPPFSDWGR ddPTM_K562_Paclitaxel_30min_R1 1 SGTNSPPPPFSDWGR 15 0 D6RAU6;D6REP2;D6RAJ6;Q9UKT5-2;Q9UKT5 D6RAU6 FBXO4 F-box only protein 4 1 S(0.786)GT(0.113)NS(0.101)PPPPFSDWGR 122.96 0.00033062 38765000 3070.9 2829.3 4227.4 3212.3 2646.3 2486.7 2336.9 2894.1 2408.9 3424 TRUE FALSE 3113.902075 3138.212542 3160.140586 3006.277456 3006.770862 2927.68133 2780.314576 2648.228141 2640.285608 2726.186921 1.142218845 1.151136233 1.159179718 1.102740767 1.102921755 1.073910709 1.019854712 0.971403729 0.968490307 1 11.41266877 -7.523390691 0.944652541 0.971257491 1.147036184 0.948378023 0.01596202 0.115084482 0.211768615 0.011209237 0.007963846 3.00E-08 7.523390691 0.175778693 S(ph)HHSPS(ph)ERSHHSPSERR ddPTM_K562_Paclitaxel_30min_R1 1 SHHSPSERSHHSPSERR 17 2 C9JG08;Q68DN1 C9JG08 C2orf16 Uncharacterized protein C2orf16 2 S(1)HHS(0.048)PS(0.575)ERS(0.356)HHS(0.018)PS(0.004)ERR 60.561 0.027802 0 2645.2 2039.1 2812.5 2083.6 1916.6 1709 2143.6 2152 2082.2 2621.1 TRUE FALSE 2682.240961 2261.735834 2102.44959 1949.967222 2177.673368 2012.067154 2550.33691 1969.174168 2282.204614 2086.918381 1.28526395 1.083768227 1.007442174 0.93437637 1.043487559 0.964133132 1.22205877 0.943579867 1.093576363 1 11.02715846 -5.286910904 2.841773337 1.026606904 1.323731604 0.487078034 0.079689874 0.319850576 3.7606565 0.019938007 0.213641096 5.17E-06 5.286910904 0.2971247 S(ph)HMSGSPGPGGSNTAPSTPVIGGSDKPGMEEK ddPTM_K562_Paclitaxel_30min_R1 1 SHMSGSPGPGGSNTAPSTPVIGGSDKPGMEEK 32 1 A0A499FIX8;H7BXI1;A0A087WXU3;A0FGR8-5;A0FGR8-2;A0FGR8;A0FGR8-6 A0A499FIX8 ESYT2 Extended synaptotagmin-2 1 S(0.565)HMS(0.191)GS(0.21)PGPGGS(0.017)NT(0.016)APS(0.001)TPVIGGSDKPGMEEK 52.377 0.0027714 6295400 755.67 543.13 1273.7 613.78 552.03 538.3 736.73 899 699.98 1174.8 TRUE FALSE 766.2517114 602.4307701 952.1386821 574.414898 627.2258319 633.7599469 876.5206715 822.6243386 767.2162066 935.3751151 0.819191893 0.644052595 1.017921759 0.614101112 0.670560743 0.677546298 0.937079314 0.879459294 0.820223025 1 9.869401237 -7.766797389 24.99980018 0.899145369 0.739852697 0.333592262 0.116412476 171.8917057 802014.7595 0.047714736 0.033230094 1.71E-08 7.766797389 -0.159292672 S(ph)HNNFVAILDLPEGEHQYK ddPTM_K562_Paclitaxel_30min_R1 2 SHNNFVAILDLPEGEHQYK 19 0 Q9Y478 Q9Y478 PRKAB1 5-AMP-activated protein kinase subunit beta-1 1 S(1)HNNFVAILDLPEGEHQYK;S(1)HNNFVAILDLPEGEHQYK 140.89 4.96E-13 38641000 8663.1 7499 12125.9 8119.6 6835.5 5870.7 7424.4 11237.5 7247.4 15458.5 TRUE FALSE 8784.410128 8317.76618 9064.566574 7598.845198 7766.610826 6911.786216 8833.141142 10282.80423 7943.545152 12308.04921 0.713712626 0.675798905 0.736474677 0.617388269 0.631018831 0.561566345 0.717671906 0.835453617 0.645394328 1 13.5873145 -10.00106924 0.575015491 1.022225792 0.664400573 0.64392043 0.071279027 2.808307762 1.103135782 0.224807583 0.032397522 9.98E-11 10.00106924 -0.357825219 S(ph)HRRGIETR ddPTM_K562_Paclitaxel_30min_R1 1 SHRRGIETR 9 2 Q5TCS8-1 Q5TCS8-1 AK9 Adenylate kinase 9 1 S(1)HRRGIETR 65.157 0.029494 0 2660.7 2610.2 3570.9 3283.2 3044.1 3663.5 2772.3 3468.9 3666.7 4097 TRUE FALSE 2697.958009 2895.190463 2669.382131 3072.630247 3458.757957 4313.170287 3298.329453 3174.195293 4018.902918 3262.029151 0.827079675 0.887542793 0.81831952 0.941938317 1.060308721 1.322235359 1.011128135 0.973073859 1.232025446 1 11.67155396 -6.661724502 2.873340447 1.107445271 0.85138116 0.563876507 0.102423636 0.199467191 3.320672552 0.032779027 0.043576199 2.18E-07 6.661724502 -0.256064111 S(ph)HSDNDRPNCSWNTQYSSAYYTSR ddPTM_K562_Paclitaxel_30min_R1 2 SHSDNDRPNCSWNTQYSSAYYTSR 24 1 O75494-6;O75494-3 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 S(0.368)HS(0.315)DNDRPNCS(0.315)WNT(0.001)QYSSAYYTSR;S(0.72)HS(0.136)DNDRPNCS(0.114)WNT(0.018)QY(0.007)S(0.003)S(0.001)AYYTSR 79.9 0.00020854 44088000 654.32 532.69 804.56 719.56 404.47 641.88 583.334 618.97 688.93 1041.92 TRUE FALSE 663.4824988 590.8508956 601.4388773 673.4106422 459.5656617 755.7084056 694.0185813 566.384635 755.1048047 829.5761321 0.799784942 0.712232275 0.724995397 0.811752672 0.553976475 0.910957266 0.836594201 0.682739791 0.910229665 1 9.696230576 -7.309708078 24.99942397 0.846306039 0.72539977 0.338969726 0.10064076 552.5082727 286154.4999 0.034503398 0.030429191 4.90E-08 7.309708078 -0.120906269 S(ph)HSGTSPDNTAPPPPPPRPQPSHSR ddPTM_K562_Paclitaxel_30min_R1 1 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 Q96D71-3;Q96D71;E9PMG1;H0YDT0;Q96D71-4 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 1 S(0.498)HS(0.431)GT(0.035)S(0.035)PDNTAPPPPPPRPQPSHSR 68.835 0.0010639 2341000 494.35 414.43 829.61 659.5 477.2 524.67 314.64 401.71 577.54 745.19 TRUE FALSE 501.2724252 459.6788689 620.164695 617.2026218 542.2027191 617.7128578 374.3412975 367.5822281 633.0152975 593.319869 0.844860338 0.774757248 1.045245116 1.040252744 0.913845545 1.041112712 0.630926617 0.619534668 1.066903926 1 9.212666286 -7.743571871 24.99896921 0.797635762 0.94337824 0.101211305 0.15533616 450.3801609 630140.656 0.060268653 0.046584376 1.80E-08 7.743571871 0.145742478 S(ph)HSLSQHTATSSK ddPTM_K562_Paclitaxel_30min_R1 1 SHSLSQHTATSSK 13 0 P49790-2;P49790;P49790-3 P49790-2 NUP153 Nuclear pore complex protein Nup153 1 S(0.751)HS(0.245)LS(0.004)QHTATSSK 101.3 0.0057715 2005800 1734.1 1350.1 1801.5 1178.6 928.36 1169.3 1320.2 1639.2 1406.1 2784.5 TRUE FALSE 1758.38275 1497.508484 1346.689044 1103.009871 1054.818349 1376.658937 1570.701058 1499.939728 1541.162188 2217.017372 0.793129893 0.675460871 0.607432789 0.497519724 0.475782627 0.620950902 0.708474854 0.676557499 0.695151156 1 11.11440436 -9.554673949 0.752422141 1.004266267 0.611941115 0.6193984 0.087199477 1.37454753 1.224547759 0.109929379 0.034882279 2.79E-10 9.554673949 -0.392325152 S(ph)HSPSSPDPDTPSPVGDSR ddPTM_K562_Paclitaxel_30min_R1 1 SHSPSSPDPDTPSPVGDSR 19 0 E9PNJ4;Q13586;G0XQ39;H0YDB2 E9PNJ4 STIM1 Stromal interaction molecule 1 1 S(0.485)HS(0.485)PS(0.024)S(0.006)PDPDTPSPVGDSR 75.764 0.0079671 53985000 619.85 626.13 934.66 747.25 689.74 634.14 401.99 695.02 681.76 937.84 TRUE FALSE 628.5298124 694.4929908 698.6935233 699.3247296 783.6942654 746.5958252 478.265504 635.9737128 747.2460942 746.7076932 0.841734749 0.930073437 0.935698841 0.93654416 1.049532866 0.999850185 0.640498964 0.85170371 1.000721033 1 9.544399785 S(ph)HSSPSLHQDEAPTTAK ddPTM_K562_Paclitaxel_30min_R1 1 SHSSPSLHQDEAPTTAK 17 0 Q8NDX1-2;Q8NDX1 Q8NDX1-2 PSD4 PH and SEC7 domain-containing protein 4 1 S(0.419)HS(0.377)S(0.101)PS(0.103)LHQDEAPTTAK 70.538 0.022969 10750000 1200.6 1233.3 2104.8 1549.7 1183.9 1019.9 1030.5 1554.8 1517.5 1637.4 TRUE FALSE 1217.412104 1367.955865 1573.417208 1450.309178 1345.167224 1200.764945 1226.031995 1422.710035 1663.262655 1303.696981 0.933815236 1.049289739 1.206888741 1.112458799 1.031809725 0.921046042 0.940427118 1.091288893 1.275804638 1 10.34839287 -5.283921071 4.91290945 1.069122411 0.928833469 0.134517008 0.104335618 0.357700532 24.24257639 0.028257609 0.160027253 5.20E-06 5.283921071 -0.140288942 S(ph)HTEEDCTEELFDFLHAR ddPTM_K562_Paclitaxel_30min_R1 1 SHTEEDCTEELFDFLHAR 18 0 P07919 P07919 UQCRH "Cytochrome b-c1 complex subunit 6, mitochondrial" 1 S(0.5)HT(0.5)EEDCTEELFDFLHAR 99.881 0.00079361 2320100 319.12 399.36 422.99 365.57 452.24 217.64 226.41 348.1 341.28 512.18 TRUE FALSE 323.5886646 442.9634753 316.200943 342.1239764 513.8427445 256.2353982 269.3701156 318.5267322 374.0614689 407.7974349 0.793503433 1.086234089 0.775387278 0.838955685 1.260044082 0.628339897 0.660548823 0.781090573 0.917272736 1 8.67170889 S(ph)IAFS(ph)PDELWLASAGY(ph)S(ph)RMVK ddPTM_K562_Paclitaxel_30min_R1 1 SIAFSPDELWLASAGYSRMVK 21 1 A0A087X0J1;A0A087X0D8;Q5JTN6 A0A087X0J1 WDR38 WD repeat-containing protein 38 4 S(1)IAFS(0.999)PDELWLAS(0.16)AGY(0.918)S(0.923)RMVK 49.606 0.019955 7743300 383.83 274.37 235.53 365.47 252.32 320.16 418.85 213 327.4 330.67 TRUE FALSE 389.2048042 304.3266445 176.0675385 342.03039 286.6902558 376.9358807 498.324601 194.9043205 358.8482329 263.2792725 1.478296413 1.155908103 0.668748196 1.299116283 1.088920723 1.431695998 1.892760475 0.740294968 1.362994623 1 8.040450135 S(ph)IDQDYER ddPTM_K562_Paclitaxel_30min_R1 1 SIDQDYER 8 0 Q9UDY2-7;Q9UDY2-4;A0A3B3IU51;A0A1B0GTW1;A0A3B3ITE1;A0A2R8YDH4;Q9UDY2-2;Q9UDY2-6;Q9UDY2-3;Q9UDY2;Q9UDY2-5;A0A3B3ISF1;A0A3B3ISZ5;A0A3B3IRI3;A0A3B3IRV6 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 S(1)IDQDYER 100.72 0.014077 33535000 1217.3 1267.4 1690.7 1517.5 1408.2 1107.9 1052.7 1261.8 1186.1 1571.8 TRUE FALSE 1234.345956 1405.779018 1263.861875 1420.174342 1600.020681 1304.370509 1252.44433 1154.602214 1300.030205 1251.466297 0.986319774 1.123305535 1.009904843 1.134808301 1.278516796 1.042273781 1.000781509 0.922599527 1.038805605 1 10.28940372 -7.517628702 19.74716733 0.989443251 1.109368633 0.327521299 0.07850561 18.30873187 68875.10223 0.030543557 0.02455136 3.04E-08 7.517628702 0.119925382 S(ph)IEDDEEGHLICQSGDVLR ddPTM_K562_Paclitaxel_30min_R1 2 SIEDDEEGHLICQSGDVLR 19 0 A0A087WX74;B7ZL31;Q9HAZ1 A0A087WX74 CLK4 Dual specificity protein kinase CLK4 1 S(1)IEDDEEGHLICQSGDVLR;S(1)IEDDEEGHLICQSGDVLR 208.13 3.21E-23 22183500 1241.7 903.38 1496.27 1378.88 1314.26 1219.64 964.28 1065.82 951.31 1669.27 TRUE FALSE 1259.087631 1002.014083 1118.518133 1290.444808 1493.284463 1435.926029 1147.247096 975.2719384 1042.687576 1329.071858 0.947343534 0.753920172 0.841578374 0.970936824 1.123554347 1.080397588 0.863194183 0.733799254 0.784523102 1 10.37620339 -11.12275865 4.864367734 1.000005301 0.901915379 0.054132363 0.125257276 8.21E-06 1.48E-06 0.138234989 0.033525098 7.54E-12 11.12275865 -0.098089923 S(ph)IGASPNPFSVHTATAVPSGK ddPTM_K562_Paclitaxel_30min_R1 1 SIGASPNPFSVHTATAVPSGK 21 0 A0A087WU64;A6NMQ1;P09884 A0A087WU64 POLA1 DNA polymerase;DNA polymerase alpha catalytic subunit 1 S(0.747)IGAS(0.253)PNPFSVHTATAVPSGK 110.03 7.63E-05 20966000 2868.5 2422.8 4523.2 2971.5 2225 2127.8 2166.8 3122.6 2973.4 3999.8 TRUE FALSE 2908.66785 2687.329497 3381.262218 2780.92129 2528.08267 2505.135454 2577.938989 2857.315639 3259.008356 3184.638564 0.91334316 0.843841285 1.061741277 0.873229798 0.793836606 0.786631011 0.809491858 0.897218187 1.023352663 1 11.63691393 -8.690752565 4.666467529 1.012270934 0.868612297 0.359173281 0.074986884 0.238251296 9.487902222 0.063133213 0.021147407 2.04E-09 8.690752565 -0.143658637 S(ph)IIGMGTGAGAY(ph)ILT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SIIGMGTGAGAYILTR 16 0 E5RIR1;E5RGM5;E5RIM2;Q92597;E5RG99;E5RIV1;Q92597-3;Q92597-2 E5RIR1 NDRG1 Protein NDRG1 3 S(0.998)IIGMGT(0.008)GAGAY(0.996)ILT(0.997)R 46.706 0.028673 5681500 172.29 124.86 178.52 118.33 124.43 0 0 68.178 0 257.26 TRUE FALSE 174.7025916 138.492637 133.4504181 110.7408434 141.3794726 0 0 62.38585335 0 204.8302708 0.852913932 0.676133642 0.651517071 0.540646863 0.690227436 0 0 0.304573407 0 1 7.678285129 -7.246837615 24.42243925 0.201143356 0.672367513 0.341383965 0.286524162 588.4584202 984236.8114 0.089057775 0.088657258 5.66E-08 7.246837615 0.471224157 S(ph)IPAGAEPGEK ddPTM_K562_Paclitaxel_30min_R1 1 SIPAGAEPGEK 11 0 A6NGP5;Q9H910;Q9H910-3;H3BU16;Q9H910-2 A6NGP5 HN1L Hematological and neurological expressed 1-like protein 1 S(1)IPAGAEPGEK 90.697 0.017035 5532000 1002.7 677.44 1574.6 1117.6 984.87 729.03 1048.7 1216.3 890.48 1101.4 TRUE FALSE 1016.740894 751.4051902 1177.072756 1045.922138 1119.025968 858.3132344 1247.68535 1112.967723 976.0145828 876.9340754 1.159426828 0.856854821 1.342259115 1.192703269 1.27606624 0.978765974 1.422781239 1.269157801 1.112985126 1 9.77632458 -5.764967322 24.99999875 1.211558236 1.008140838 0.203707662 0.149657341 115.2254541 816544.8436 0.036982618 0.082225673 1.72E-06 5.764967322 -0.203417398 S(ph)IPNGLHDPSSTYIR ddPTM_K562_Paclitaxel_30min_R1 2 SIPNGLHDPSSTYIR 15 0 A6NKD9 A6NKD9 CCDC85C Coiled-coil domain-containing protein 85C 1 S(1)IPNGLHDPSSTYIR;S(1)IPNGLHDPSSTYIR 105.99 0.0015695 14235000 1593.96 1464.54 1819.46 1724.42 1464.29 1520.95 1466.09 1584.13 1387.48 1699.67 TRUE FALSE 1616.280358 1624.44343 1360.11482 1613.823419 1663.751089 1790.669127 1744.272924 1449.548269 1520.753653 1353.276321 1.194346145 1.200378226 1.005053291 1.192530597 1.229424518 1.323210271 1.288925918 1.071139904 1.123756937 1 10.40224073 -8.290781279 23.42094955 1.073086201 1.202007835 0.368903434 0.083577291 444.8850595 355106.8258 0.050556732 0.024295536 5.12E-09 8.290781279 0.128921634 S(ph)IQDLTVTGTEPGQVSSR ddPTM_K562_Paclitaxel_30min_R1 2 SIQDLTVTGTEPGQVSSR 18 0 Q9UG54;O43318-4;O43318-3;O43318-2;O43318 Q9UG54 DKFZp586F0420;MAP3K7 Mitogen-activated protein kinase kinase kinase 7 1 S(1)IQDLTVTGTEPGQVSSR;S(1)IQDLTVTGTEPGQVSSR 168.05 6.01E-10 313140000 1669.22 1420.68 2379.6 1850.41 1625.44 1836.95 1675.54 2267.3 1114.01 2903.4 TRUE FALSE 1692.59423 1575.794647 1778.840549 1731.732985 1846.852447 2162.70729 1993.464968 2074.678713 1221.015638 2311.685486 0.732190534 0.68166481 0.76949938 0.749121364 0.798920293 0.935554297 0.862342641 0.897474473 0.528192804 1 11.17472941 -6.807809292 2.927322543 0.841405674 0.728842027 0.163917146 0.118361532 0.497917725 8.712074615 0.037937443 0.046101832 1.56E-07 6.807809292 -0.112563647 S(ph)ISGPSVGVMEMR ddPTM_K562_Paclitaxel_30min_R1 1 SISGPSVGVMEMR 13 0 Q8NFH5-2;Q8NFH5;C9IYQ7;F8WCF5;F8WEL4;C9JIY9;C9JWU7 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 S(0.996)IS(0.004)GPSVGVMEMR 104.81 0.006307 17316000 1079.9 1002.6 1052.6 1174.7 1108.4 1005.6 1332.5 972.3 870.63 1192.8 TRUE FALSE 1095.021932 1112.067259 786.8581116 1099.36 1259.382845 1183.929041 1585.334919 889.6970461 954.2579016 949.7067053 1.153010636 1.170958626 0.828527489 1.157578433 1.326075554 1.246625968 1.669288961 0.93681243 1.004792212 1 9.891338229 -5.137448734 15.3529562 1.162090182 1.152941092 0 0.224592324 294950.758 35927126.98 0.058762812 1535.28744 7.29E-06 5.137448734 -0.00914909 S(ph)ISNPPGSNLR ddPTM_K562_Paclitaxel_30min_R1 1 SISNPPGSNLR 11 0 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;Q9H4A3-4 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 S(0.756)IS(0.244)NPPGSNLR 109.6 0.0055478 33804000 940.69 770.98 1043.9 698.62 985.13 866.98 814 828.85 830.42 1017.2 TRUE FALSE 953.8625623 855.1582037 780.3545342 653.8136401 1119.321384 1020.72673 968.4522506 758.434019 910.1855514 809.8940816 1.17776211 1.05588894 0.963526654 0.807282897 1.382058975 1.260321261 1.195776426 0.93646075 1.123832822 1 9.661589434 -5.248343772 21.54784988 1.085027293 1.177762504 0.031632513 0.159618952 1524.683021 2508426.793 0.042538203 0.645868991 5.64E-06 5.248343772 0.092735211 S(ph)ISPSALQDLLR ddPTM_K562_Paclitaxel_30min_R1 1 SISPSALQDLLR 12 0 Q92793-2;Q92793 Q92793-2 CREBBP CREB-binding protein 1 S(0.756)IS(0.244)PSALQDLLR 185.2 0.00050834 14620000 1179.3 1099.8 1589.8 1284.7 1012.7 930.2 1106.8 1456.8 1081.2 1394.7 TRUE FALSE 1195.813838 1219.879883 1188.435328 1202.305092 1150.646885 1095.157909 1316.809522 1333.035747 1185.054091 1110.459374 1.076864103 1.098536256 1.070219546 1.08270966 1.036189987 0.986220599 1.18582413 1.200436304 1.067174647 1 10.1169409 -7.77119273 24.99995574 1.130061777 1.060903445 0.140025995 0.061118284 319.3269709 818496.0087 0.025226474 0.017245229 1.69E-08 7.77119273 -0.069158331 S(ph)ISTSGPLDKEDTGR ddPTM_K562_Paclitaxel_30min_R1 1 SISTSGPLDKEDTGR 15 1 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 S(0.853)IS(0.059)T(0.044)S(0.044)GPLDKEDTGR 160.63 0.00014508 10293000 1893.7 1663.2 3014.2 2172.8 1340.5 1312.2 1316.9 2283.1 1781 2513.5 TRUE FALSE 1920.217643 1844.793801 2253.227931 2033.446333 1523.098795 1544.900246 1566.7749 2089.136404 1952.073008 2001.24732 0.959510413 0.921821997 1.125911779 1.016089472 0.761074745 0.771968677 0.782899187 1.043917153 0.975428168 1 10.96668376 -6.715142117 24.98576486 0.880232277 1.008409877 0.22709965 0.10456906 193.0743591 104197.5889 0.033747613 0.043567826 1.93E-07 6.715142117 0.128177599 S(ph)ISVEGSSLLIGASNSLVADHLQR ddPTM_K562_Paclitaxel_30min_R1 1 SISVEGSSLLIGASNSLVADHLQR 24 0 O75665-3;O75665;O75665-2 O75665-3 OFD1 Oral-facial-digital syndrome 1 protein 1 S(0.817)IS(0.183)VEGSSLLIGASNSLVADHLQR 183.63 6.23E-88 0 335.51 350 546.67 445.8 285.15 360.55 392.41 767.37 538.78 577.62 TRUE FALSE 340.2081751 388.2141836 408.6563974 417.2083833 323.9922576 424.4884801 466.867749 702.1771287 590.5322263 459.9007269 0.739742634 0.844126049 0.888575237 0.907170524 0.70448303 0.923000237 1.015148969 1.52680152 1.28404282 1 8.845178668 -7.990112437 3.308346627 1.304242418 0.835949012 0.661606397 0.137900631 0.130788902 2.98550182 0.064441325 0.038259113 1.02E-08 7.990112437 -0.468293406 S(ph)ITLPDS(ph)T(ph)LGIMS(ph)SMSPVKK ddPTM_K562_Paclitaxel_30min_R1 1 SITLPDSTLGIMSSMSPVKK 20 1 Q9NR99 Q9NR99 MXRA5 Matrix-remodeling-associated protein 5 4 S(0.546)IT(0.513)LPDS(0.9)T(0.709)LGIMS(0.708)S(0.312)MS(0.312)PVKK 41.554 0.02644 26632000 1031.5 466.64 2099.3 975.2 584.41 632.03 318.31 526.97 886.34 812.69 TRUE FALSE 1045.944182 517.5893333 1569.305751 912.6550368 664.0165361 744.1116464 378.7076608 482.2006093 971.4769173 647.0633319 1.616447928 0.799905214 2.425273808 1.410457048 1.026200224 1.149982714 0.585271398 0.745213931 1.501362957 1 9.337763114 -6.709441429 4.107569611 0.971170191 1.58627654 0.295599503 0.429643473 0.275837319 9.581495087 0.132214424 0.168472489 1.95E-07 6.709441429 0.61510635 S(ph)IVS(ph)LMPEDQIS(ph)PVS(ph)EVLKPK ddPTM_K562_Paclitaxel_30min_R1 1 SIVSLMPEDQISPVSEVLKPK 21 1 Q5THK1-3;Q5THK1-2;Q5THK1-4;Q5THK1 Q5THK1-3 PRR14L Protein PRR14L 4 S(1)IVS(1)LMPEDQIS(1)PVS(1)EVLKPK 40.104 0.030861 23755000 2549.8 1927.5 4622.7 2485.5 1766.2 1601.9 1479.5 2822.9 2299 3862.3 TRUE FALSE 2585.505067 2137.950968 3455.642212 2326.091155 2006.786342 1885.974473 1760.227401 2583.077025 2519.829222 3075.16114 0.840770597 0.695232175 1.123727198 0.75641277 0.652579247 0.613292893 0.57240168 0.839981031 0.819413718 1 11.5864463 -6.499547487 24.83552288 0.723985123 0.87954684 0.129344995 0.153027621 1255.51887 1336467.543 0.043407266 0.06389923 3.17E-07 6.499547487 0.155561717 S(ph)KLSQLHES(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SKLSQLHESR 10 1 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2;M0R2S2;M0R3I1 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 2 S(1)KLSQLHES(1)R 107.99 0.0002726 0 172.37 183.83 288.4 152.14 194.59 138.45 138.64 277.19 140.76 249.44 TRUE FALSE 174.7837118 203.9011811 215.5898531 142.3824214 221.0964524 163.0021636 164.9462163 253.6409793 154.2806269 198.6039911 0.880061427 1.026672123 1.085526287 0.716916214 1.113252816 0.820739617 0.830528205 1.277119246 0.776825411 1 7.633750805 S(ph)KSEEAHAEDSVMDHHFR ddPTM_K562_Paclitaxel_30min_R1 2 SKSEEAHAEDSVMDHHFR 18 1 Q8NC51-4;Q8NC51-3;Q8NC51-2;Q8NC51 Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 S(0.5)KS(0.5)EEAHAEDSVMDHHFR;S(0.5)KS(0.5)EEAHAEDSVMDHHFR 99.711 0.00051628 99636000 6146 5133.7 11885.5 6573.7 5406.4 4190.1 4187.2 6311.3 5844.5 8613.6 TRUE FALSE 6232.062962 5694.214727 8884.858527 6152.092305 6142.843211 4933.155403 4981.699341 5775.115671 6405.890339 6858.143592 0.908709898 0.830285142 1.295519466 0.897049212 0.895700583 0.719313519 0.726391811 0.842081475 0.934056025 1 12.7436024 -6.630759632 3.603714797 0.83139506 1.005429604 0.186631786 0.13926786 0.351829717 8.808019396 0.043470384 0.057577011 2.34E-07 6.630759632 0.174034544 S(ph)KSYNTPLLNPVQEHEAEGAAAGGTSIR ddPTM_K562_Paclitaxel_30min_R1 1 SKSYNTPLLNPVQEHEAEGAAAGGTSIR 28 1 P85299-2;P85299-4;P85299-3;P85299;P85299-5 P85299-2 PRR5 Proline-rich protein 5 1 S(0.616)KS(0.19)Y(0.155)NT(0.04)PLLNPVQEHEAEGAAAGGTSIR 110.89 8.25E-10 11331000 447.74 756.55 948.65 657.53 550.18 520.36 503.58 705.48 638.44 783.69 TRUE FALSE 454.0097414 839.1526875 709.1515747 615.3589688 625.1238306 612.6385398 599.1316761 645.5450705 699.7650146 623.9735478 0.727610558 1.344852984 1.136509035 0.986194 1.00184348 0.981834153 0.96018762 1.034571213 1.121465833 1 9.28534106 -6.267885316 24.42590625 1.009863556 1.097177071 0.020783576 0.147142963 1071.430428 4060019.707 0.039829015 0.060701245 5.40E-07 6.267885316 0.087313515 S(ph)KTPTPSVETLPHLRPFPASSHPR ddPTM_K562_Paclitaxel_30min_R1 1 SKTPTPSVETLPHLRPFPASSHPR 24 2 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 S(0.31)KT(0.31)PT(0.31)PS(0.068)VET(0.001)LPHLRPFPASSHPR 49.768 0.013965 11154000 811.28 713.53 1116.1 857.8 668.96 486.95 628.51 986.14 903.16 1215.3 TRUE FALSE 822.640423 791.4356184 834.3267513 802.7845474 760.0836776 573.3037454 747.7664915 902.3612517 989.9125534 967.6211929 0.850167844 0.817918855 0.862245223 0.829647545 0.785517807 0.592487793 0.77278846 0.932556313 1.02303728 1 9.918298557 -8.420130209 3.455744618 1.005369365 0.785744557 0.626363316 0.07159028 0.183301594 4.010475195 0.052844157 0.021772444 3.80E-09 8.420130209 -0.219624807 S(ph)LCYQLPALLY(ph)S(ph)RR ddPTM_K562_Paclitaxel_30min_R1 1 SLCYQLPALLYSRR 14 1 V9GYA3;A0A087X072;O94761 V9GYA3 RECQL4 ATP-dependent DNA helicase Q4 3 S(1)LCYQLPALLY(1)S(1)RR 67.846 0.020667 8255000 364.5 220.26 377.94 145.33 317.44 234.01 165.42 267.99 200.39 254.41 TRUE FALSE 369.6041246 244.3087317 282.5243727 136.0091843 360.6807023 275.5083878 196.8075814 245.2225768 219.6383549 202.5611024 1.824654982 1.206098944 1.394761232 0.67144769 1.780601992 1.360124844 0.971596122 1.210610398 1.084306672 1 7.662213351 -5.259963678 6.527445469 1.200106094 1.837261772 0.317031984 0.280314744 0.151244372 39.27324176 0.068474211 0.422347465 5.50E-06 5.259963678 0.637155678 S(ph)LDFFR ddPTM_K562_Paclitaxel_30min_R1 2 SLDFFR 6 0 Q6P3S1 Q6P3S1 DENND1B DENN domain-containing protein 1B 1 S(1)LDFFR;S(1)LDFFR 107.29 0.012505 5065300 1249.14 1417.92 2200.6 1795.09 1591.26 1813.7 1319.36 1395.87 1308.25 1981.81 TRUE FALSE 1266.631814 1572.733301 1645.031313 1679.960962 1808.016552 2135.334229 1569.701672 1277.282131 1433.913258 1577.916034 0.802724471 0.996715457 1.042534126 1.064670696 1.145825578 1.353262267 0.994794171 0.80947408 0.908738632 1 10.62380472 -8.003512535 24.9497616 0.895890608 1.075624991 0.22126793 0.135055042 205.4609776 1459404.011 0.061937765 0.040774736 9.92E-09 8.003512535 0.179734382 S(ph)LDGLSEACGGAGSSGSAESGAGGGRR ddPTM_K562_Paclitaxel_30min_R1 1 SLDGLSEACGGAGSSGSAESGAGGGRR 27 1 Q96GS4 Q96GS4 C17orf59 Uncharacterized protein C17orf59 1 S(0.998)LDGLS(0.002)EACGGAGSSGSAESGAGGGRR 94.834 9.25E-07 8872800 118.09 0 207.08 64.746 149.47 124.69 0 209.28 0 169.67 TRUE FALSE 119.7436243 0 154.8000929 60.59348135 169.8303445 146.8020208 0 191.5003577 0 135.0911609 0.88639126 0 1.145893572 0.44853772 1.25715364 1.086688573 0 1.417563936 0 1 7.077789471 -4.936303353 20.90435028 0.714992411 4.564158263 0.010094772 0.528890278 3976.648218 1331592.198 0.118686793 14298.87458 1.16E-05 4.936303353 3.849165852 S(ph)LDGSGSEPAVCEMCGIVGTR ddPTM_K562_Paclitaxel_30min_R1 2 SLDGSGSEPAVCEMCGIVGTR 21 0 H7C228;Q969R5-2;Q969R5-3;Q969R5 H7C228 L3MBTL2 Lethal(3)malignant brain tumor-like protein 2 1 S(1)LDGSGSEPAVCEMCGIVGTR;S(1)LDGSGSEPAVCEMCGIVGTR 245.22 5.77E-78 69098000 855.91 737.48 1024.75 974.63 789.77 709.56 822.87 999.71 644.96 1063.37 TRUE FALSE 867.8953807 818.0005604 766.0391886 912.1215941 897.3500449 835.3905033 979.0052868 914.7783955 706.9112898 846.6546103 1.025087881 0.966156152 0.904783579 1.07732431 1.05987735 0.986695747 1.156321923 1.080462309 0.834946484 1 9.725629737 -4.886840054 18.80726256 1.013423914 2.593940748 0 0.088284157 6425.132171 1034100.184 0.021699417 13802.17474 1.30E-05 4.886840054 1.580516834 S(ph)LDGVTNDR ddPTM_K562_Paclitaxel_30min_R1 2 SLDGVTNDR 9 0 E9PRL8;E9PQ71;E9PIP9;E9PJ54;E9PM00;Q9UBM7 E9PRL8 DHCR7 7-dehydrocholesterol reductase 1 S(0.998)LDGVT(0.002)NDR;S(1)LDGVTNDR 119.34 0.003021 17827300 1534.7 1813.64 2067.69 1775.9 1527.44 1591.84 1433.12 1780.46 1310.02 1899.97 TRUE FALSE 1556.190535 2011.659349 1545.676087 1662.001723 1735.503188 1874.130473 1705.047039 1629.19881 1435.853274 1512.755071 1.02871282 1.32979845 1.021762291 1.098658834 1.14724665 1.2388856 1.127113748 1.076974615 0.94916441 1 10.56296271 -8.536410135 2.822814364 0.975220021 1.146309471 0.363909154 0.087191455 0.286837554 4.424336007 0.067237861 0.022874365 2.91E-09 8.536410135 0.17108945 S(ph)LDQDS(ph)PS(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 SLDQDSPSK 9 0 H3BLT5;H0Y781;Q2LD37-7;Q2LD37-4;Q2LD37 H3BLT5 KIAA1109 Uncharacterized protein KIAA1109 3 S(1)LDQDS(1)PS(1)K 89.356 0.017156 65241000 0 0 0 0 0 57.324 0 0 124.81 0 TRUE FALSE 0 0 0 0 0 67.48960653 0 0 136.7985582 0 0 S(ph)LDS(ph)LDPAGLLTSPKFR ddPTM_K562_Paclitaxel_30min_R1 1 SLDSLDPAGLLTSPKFR 17 1 Q6IS01;A8MYR7;A8MXQ8;A0A0A0MTP4;O14490-3;O14490-5;O14490-2;O14490-4;O14490-6;O14490-7;O14490 Q6IS01 DLGAP1 Disks large-associated protein 1 2 S(1)LDS(0.999)LDPAGLLT(0.001)SPKFR 54.598 0.022261 8136500 389.32 456.64 287.04 437.67 367.61 431.05 581.49 575.52 588.98 473.58 TRUE FALSE 394.7716812 506.4974995 214.5732019 409.5998051 417.6847057 507.4906653 691.8246919 526.6259837 645.5541606 377.064136 1.046961626 1.343266174 0.569062877 1.08628683 1.107728542 1.345900118 1.834766624 1.396648298 1.712053995 1 8.558666127 -7.307884483 2.800762962 1.52442186 1.014849675 0.38321225 0.273070076 0.264850209 4.124051688 0.100139089 0.090062714 4.92E-08 7.307884483 -0.509572185 S(ph)LDYLNLDK ddPTM_K562_Paclitaxel_30min_R1 1 SLDYLNLDK 9 0 Q96GV9 Q96GV9 C5orf30 UNC119-binding protein C5orf30 1 S(1)LDYLNLDK 125.28 0.0016423 9529300 990.63 1082.3 1722.7 1170.1 1001.4 895.48 1066.1 1620.9 805.66 1839.3 TRUE FALSE 1004.501876 1200.469174 1287.783079 1095.055023 1137.807634 1054.280805 1268.38691 1483.194428 883.0472428 1464.44965 0.685924488 0.819740832 0.879363165 0.747758739 0.776952375 0.719916048 0.866118483 1.012799878 0.602989145 1 10.51614288 -7.845089875 9.097341509 0.872166262 0.777932239 0.148312706 0.115487504 0.628610062 62.20063561 0.046399427 0.031274907 1.43E-08 7.845089875 -0.094234023 S(ph)LEGGGCPAR ddPTM_K562_Paclitaxel_30min_R1 2 SLEGGGCPAR 10 0 Q9Y613 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 1 S(1)LEGGGCPAR;S(1)LEGGGCPAR 106.62 0.0061956 23305000 1239.11 840.53 1099.2 1169.15 937.63 718.28 827.95 848.98 850.5 1236.82 TRUE FALSE 1256.461363 932.3019079 821.6933653 1094.165952 1065.35108 845.6568728 985.0491903 776.8538498 932.1943251 984.7554051 1.275912126 0.946734492 0.834413664 1.111104287 1.081843344 0.85874814 1.000298333 0.788880006 0.946625243 1 9.94362162 -7.259798177 24.99112429 0.910802094 1.035682011 0.218551022 0.121973056 256.809669 3910540.643 0.041890215 0.039778961 5.50E-08 7.259798177 0.124879917 S(ph)LELNGAVEPSEGAPR ddPTM_K562_Paclitaxel_30min_R1 1 SLELNGAVEPSEGAPR 16 0 M0R2A7;M0QYS2;M0R0P4;R4GN16;F5GYK2;Q9NRL3-2;Q9NRL3;Q9NRL3-3 M0R2A7 STRN4 Striatin-4 1 S(1)LELNGAVEPSEGAPR 86.411 0.014583 5525500 481.77 518.74 562.55 502.04 333.77 403.91 433.33 622.11 556.32 614.12 TRUE FALSE 488.5162664 575.3777875 420.527295 469.8414014 379.2351248 475.5377673 515.5521054 569.2578724 609.7570217 488.9620069 0.999088394 1.176733119 0.86004084 0.960895519 0.775592213 0.972545434 1.054380705 1.164216983 1.247043764 1 8.93357856 -7.978993399 2.864483605 1.152142122 0.9550616 0.341729138 0.111831905 0.303762287 5.051684291 0.058985347 0.034391184 1.05E-08 7.978993399 -0.197080522 S(ph)LEQEEPFDLSQKR ddPTM_K562_Paclitaxel_30min_R1 1 SLEQEEPFDLSQKR 14 1 Q8N895 Q8N895 ZNF366 Zinc finger protein 366 1 S(1)LEQEEPFDLSQKR 78.324 0.021055 28583000 812.33 764.87 746.86 899.08 681.9 804.16 474.7 827.17 856.63 921.93 TRUE FALSE 823.7051263 848.3810932 558.305956 841.4170329 774.7863247 946.766485 564.7718469 756.8967455 938.913139 734.0401599 1.122152671 1.155769316 0.760593202 1.146282014 1.055509449 1.289802025 0.769401836 1.031138059 1.279103229 1 9.519715186 S(ph)LEQNIQLPAALLSR ddPTM_K562_Paclitaxel_30min_R1 1 SLEQNIQLPAALLSR 15 0 P33993-3;P33993 P33993-3 MCM7 DNA replication licensing factor MCM7 1 S(1)LEQNIQLPAALLSR 149.24 4.60E-30 0 474.54 366.52 688.81 464.82 431.64 453.42 347.57 514.93 574.8 551.01 TRUE FALSE 481.1850241 406.5378931 514.9113964 435.0085257 490.4366757 533.8276707 413.5195931 471.1834824 630.0121083 438.7138595 1.096808349 0.926658423 1.173683906 0.991554099 1.117896472 1.216801473 0.94257244 1.074010935 1.436043322 1 8.777136473 -6.935667733 0.617611409 1.147577085 1.029570587 0.065701397 0.139917782 2.653460458 2.204179511 0.102603861 0.161082552 1.16E-07 6.935667733 -0.118006498 S(ph)LESINSR ddPTM_K562_Paclitaxel_30min_R1 4 SLESINSR 8 0 E5RJH3;A0A0C4DH44;E5RI99;P62888 E5RJH3 RPL30 60S ribosomal protein L30 1 S(0.999)LES(0.001)INSR;S(0.996)LES(0.004)INSR;S(1)LESINSR;S(1)LESINSR 134.84 9.59E-05 105985000 3984.18 3107.8 5856.53 4264.83 3376.84 3347.33 3154.53 4281.79 3291.63 5084.24 TRUE FALSE 4039.970812 3447.120114 4377.976569 3991.302892 3836.822778 3940.931977 3753.0856 3918.025213 3607.805769 4048.069097 0.99799947 0.851546758 1.08149749 0.985976967 0.947815535 0.973533772 0.927129827 0.967875083 0.891241153 1 11.9830182 -7.391352919 1.774058572 0.944762573 0.974602237 0.040466813 0.059085909 1.360432704 8.495019955 0.025979511 0.021582396 4.06E-08 7.391352919 0.029839664 S(ph)LEVLWNVSRMDLEMSGLK ddPTM_K562_Paclitaxel_30min_R1 1 SLEVLWNVSRMDLEMSGLK 19 1 Q6PK65;Q16549 Q6PK65 PCSK7 Proprotein convertase subtilisin/kexin type 7 1 S(0.992)LEVLWNVS(0.008)RMDLEMSGLK 66.436 0.017546 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 S(ph)LEY(ph)S(ph)GTLSS(ph)VAHPSLLVI ddPTM_K562_Paclitaxel_30min_R1 1 SLEYSGTLSSVAHPSLLVI 19 0 I3L2Z6;I3L1A5 I3L2Z6 TXNDC11 4 S(0.998)LEY(0.942)S(0.95)GT(0.165)LS(0.165)S(0.778)VAHPS(0.002)LLVI 61.344 0.028598 12198000 979.27 1068.3 1389.9 1155.9 1202.9 1225.3 673.3 689.99 726.4 668.32 TRUE FALSE 992.9828013 1184.940607 1039.002555 1081.765748 1366.755345 1442.589751 801.0551601 631.3710427 796.1739656 532.1160172 1.86610207 2.226846343 1.952586506 2.032950922 2.568528857 2.711043653 1.505414485 1.186528919 1.496241308 1 9.05559702 -7.922911978 6.40007644 1.272816812 2.218402653 0.744269889 0.269983435 0.114435687 7.503830239 0.122315443 0.081874942 1.19E-08 7.922911978 0.945585841 S(ph)LGHPEPLSNGRPQGNSR ddPTM_K562_Paclitaxel_30min_R1 2 SLGHPEPLSNGRPQGNSR 18 1 P49768;P49768-2;P49768-7;G3V4M0;G3V2G7;G3V3P0;G3V3Z0;G3V499;H0YM52;G3V5B1;G3V4P4;G3V2B1;G3V449;P49768-4;P49768-3;P49768-5;P49768-6;G3V519 P49768 PSEN1 Presenilin-1;Presenilin-1 NTF subunit;Presenilin-1 CTF subunit;Presenilin-1 CTF12 1 S(0.999)LGHPEPLS(0.001)NGRPQGNSR;S(0.999)LGHPEPLS(0.001)NGRPQGNS(0.001)R 98.175 0.00078867 158067000 991.85 943 1281.17 1139.3 897.6 963.01 713.28 1206.76 1027.1 1289.68 TRUE FALSE 1005.73896 1045.959929 957.7227882 1066.230397 1019.868316 1133.786302 848.6211564 1104.238206 1125.757544 1026.842508 0.979448116 1.018617676 0.932687126 1.038358257 0.99320812 1.104148195 0.826437501 1.07537251 1.096329316 1 10.00399921 S(ph)LGSVQAPSYGAR ddPTM_K562_Paclitaxel_30min_R1 1 SLGSVQAPSYGAR 13 0 F8VZY9;P05783 F8VZY9 KRT18 "Keratin, type I cytoskeletal 18" 1 S(0.999)LGS(0.001)VQAPSYGAR 111.66 0.0042624 11581000 213.23 214.68 241.81 127.64 199.37 198.97 170.13 187.06 209.13 216.11 TRUE FALSE 216.2158779 238.1194884 180.7620748 119.4537417 226.5275694 234.2545358 202.4112794 171.1680854 229.2178709 172.0666634 1.256582034 1.383879269 1.050535131 0.69422943 1.316510502 1.361417321 1.176353835 0.994777734 1.33214573 1 7.426823803 -10.82549216 0.013309066 6.87E-07 2.196524899 0.034232066 0.205230862 15250.50259 41.5060135 3680.765072 3178.081515 1.49E-11 10.82549216 2.196524211 S(ph)LHSAHSLASR ddPTM_K562_Paclitaxel_30min_R1 2 SLHSAHSLASR 11 0 F1T0I1;O15027-2;O15027-4;O15027-3;O15027;O15027-5;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 F1T0I1 SEC16A Protein transport protein Sec16A 1 S(0.988)LHS(0.012)AHSLASR;S(1)LHSAHSLASR 124.48 0.0014409 49462000 1516.82 1104.87 1351.76 1436.22 1351.88 1325.95 1290.18 1662.75 1016.55 2061.83 TRUE FALSE 1538.06016 1225.503443 1010.49147 1344.107277 1536.028944 1561.088615 1534.98492 1521.489009 1114.19417 1641.627914 0.936911554 0.746517181 0.615542329 0.818764877 0.935674235 0.95093937 0.935038267 0.926817213 0.678712977 1 10.68091145 -6.557273097 6.172923288 0.903175972 0.756729648 0.250851969 0.108280629 0.240090393 26.1534011 0.032457757 0.04268153 2.77E-07 6.557273097 -0.146446324 S(ph)LKPS(ph)NHAT(ph)IQS(ph)IVR ddPTM_K562_Paclitaxel_30min_R1 1 SLKPSNHATIQSIVR 15 1 P12645 P12645 BMP3 Bone morphogenetic protein 3 4 S(1)LKPS(1)NHAT(1)IQS(1)IVR 45.79 0.030418 29338000 2652.9 2119.4 1894.6 2429.2 2199.2 2262 2461 1993.9 2156.9 2173.7 TRUE FALSE 2690.048785 2350.803259 1416.284798 2273.401985 2498.768273 2663.13394 2927.961903 1824.505749 2364.079882 1730.698747 1.554313707 1.358297199 0.818331209 1.313574641 1.443791577 1.538762274 1.691780218 1.054201809 1.365968449 1 10.75713891 -9.346761111 1.262020787 1.00359053 1.354075219 0.160100515 0.239733508 2.583311413 6.617726435 0.24515329 0.07410264 4.50E-10 9.346761111 0.350484689 S(ph)LLGIDTEDAIQGR ddPTM_K562_Paclitaxel_30min_R1 1 SLLGIDTEDAIQGR 14 0 P49454 P49454 CENPF Centromere protein F 1 S(1)LLGIDTEDAIQGR 179.55 3.21E-06 10929000 284.96 378.32 385.94 354.16 269.01 303.41 203.38 312.73 137.8 536.5 TRUE FALSE 288.9503192 419.626257 288.5046738 331.4457628 305.6537164 357.2155034 241.9702933 286.1616345 151.0363057 427.1610055 0.676443579 0.98236087 0.675400306 0.775927012 0.71554686 0.836254946 0.566461569 0.669915163 0.353581679 1 8.738636143 -7.762285528 24.99999337 0.619982523 0.778865266 0.113465148 0.170486827 40.31783717 1191146.2 0.06401322 0.046015621 1.73E-08 7.762285528 0.158882743 S(ph)LLT(ph)LWQRTS(ph)S(ph)SSS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SLLTLWQRTSSSSSR 15 1 A0A3B3IS63 A0A3B3IS63 5 S(1)LLT(0.953)LWQRT(0.259)S(0.836)S(0.836)S(0.127)S(0.127)S(0.862)R 91.622 0.011901 8507500 56.509 161.14 147.5 126.98 0 0 146 0 298.88 132.97 TRUE FALSE 57.30030035 178.7338101 110.2618007 118.8360711 0 0 173.7027378 0 327.5887594 105.870641 0.54122937 1.68822828 1.041476652 1.122464831 0 0 1.64070734 0 3.094236101 1 6.726158761 -8.754151686 24.99960538 2.047118173 0.786506611 0.313816225 0.763511294 178.1497605 611137.9304 0.52332976 0.188821802 1.76E-09 8.754151686 -1.260611562 S(ph)LLTST(ph)INS(ph)IK ddPTM_K562_Paclitaxel_30min_R1 1 SLLTSTINSIK 11 0 E7ERV5;A0A087WY00;G3V394;F8WE88;F8W6H6;Q9Y4I1-2;Q9Y4I1;Q9Y4I1-3 E7ERV5 MYO5A Unconventional myosin-Va 3 S(0.648)LLT(0.34)S(0.013)T(1)INS(1)IK 64.842 0.022478 0 174.16 202.28 228.89 149.73 137.2 216.24 149.66 222.45 162.6 208.44 TRUE FALSE 176.5987773 224.3656145 171.1038886 140.126988 155.8889628 254.5871278 178.0572037 203.551484 178.2184565 165.9598136 1.064105662 1.351927371 1.030995908 0.844342886 0.939317534 1.534028765 1.072893491 1.226510681 1.073865128 1 7.374690132 S(ph)LNFQEDDDTSRETFASDTNEALASLDESQEGHAEAK ddPTM_K562_Paclitaxel_30min_R1 1 SLNFQEDDDTSRETFASDTNEALASLDESQEGHAEAK 37 1 Q9H814 Q9H814 PHAX Phosphorylated adapter RNA export protein 1 S(0.172)LNFQEDDDT(0.135)S(0.135)RET(0.135)FAS(0.135)DT(0.135)NEALAS(0.152)LDES(0.001)QEGHAEAK 40.937 0.014393 30512000 188.59 206.85 411.85 201.62 230.17 178.66 162.04 364.94 192.81 358.89 TRUE FALSE 191.2308418 229.4345825 307.8733738 188.6889956 261.5230508 210.3428425 192.7862441 333.9360691 211.330262 285.748021 0.669228928 0.802926235 1.077429592 0.660333517 0.915222614 0.736113033 0.674672193 1.168638257 0.739568594 1 8.158599697 -8.243721502 24.97272614 0.96557762 0.799992444 0.21641018 0.154966471 1267.512709 1786518.69 0.070682524 0.040695409 5.71E-09 8.243721502 -0.165585176 S(ph)LNLTFATPLQPQSVQRPGLAR ddPTM_K562_Paclitaxel_30min_R1 1 SLNLTFATPLQPQSVQRPGLAR 22 1 Q96BT3;H3BUW2;H3BTR4;Q96BT3-2 Q96BT3 CENPT Centromere protein T 1 S(0.992)LNLT(0.007)FATPLQPQS(0.001)VQRPGLAR 57.051 0.017952 2820500 278.78 248.65 344.52 261.69 264.63 308.69 158.18 254.76 276.37 287.08 TRUE FALSE 282.6837801 275.7984479 257.541665 244.9063747 300.6770862 363.4318373 188.1938292 233.1165478 302.9165734 228.5729384 1.236733369 1.206610239 1.126737342 1.071458312 1.315453563 1.590003785 0.823342564 1.01987816 1.325251254 1 7.836510798 -9.15057078 0.492401434 1.00775448 1.213194837 0.072719898 0.195131295 3.766876274 2.129042397 0.265831986 0.1175783 7.07E-10 9.15057078 0.205440357 S(ph)LPAGDALYLSFNPPQPSR ddPTM_K562_Paclitaxel_30min_R1 2 SLPAGDALYLSFNPPQPSR 19 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF0 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 S(1)LPAGDALYLSFNPPQPSR;S(1)LPAGDALYLSFNPPQPSR 149.72 5.00E-12 37624000 901.59 1027.52 1478.28 1314.31 1388.04 1393.05 1311.14 1758.22 1049.41 1904.04 TRUE FALSE 914.2150416 1139.708108 1105.069931 1230.016039 1577.114548 1640.087858 1559.92197 1608.848237 1150.210519 1515.995603 0.603045972 0.751788532 0.728940063 0.81135858 1.040316044 1.081855287 1.028975261 1.061248617 0.758716264 1 10.56604985 -6.564735771 2.868954038 1.004373562 0.701822938 0.682190675 0.092775989 0.154163424 2.580031981 0.029005943 0.04100403 2.72E-07 6.564735771 -0.302550624 S(ph)LPAS(ph)PSTSDFCQTR ddPTM_K562_Paclitaxel_30min_R1 1 SLPASPSTSDFCQTR 15 0 Q9Y2D8-2;Q9Y2D8-3;Q9Y2D8;S4R2Y6 Q9Y2D8-2 SSX2IP Afadin- and alpha-actinin-binding protein 2 S(1)LPAS(0.971)PS(0.02)T(0.004)S(0.005)DFCQT(0.001)R 180.7 7.40E-06 51177000 1352.8 1214.8 1938.3 1795.6 1389.7 1344.3 1122 1642.6 1360 2049 TRUE FALSE 1371.743374 1347.435972 1448.952192 1680.438253 1579.000668 1582.69273 1334.893643 1503.050877 1490.634077 1631.412675 0.840831627 0.825932024 0.888157984 1.030050997 0.967873238 0.970136345 0.818244006 0.921318622 0.913707549 1 10.67190605 -5.997439457 7.032320626 0.940776471 0.838417065 0.4100389 0.054195908 0.14058737 42.24450298 0.015486072 0.030593533 1.01E-06 5.997439457 -0.102359406 S(ph)LPASPS(ph)TSDFCQTR ddPTM_K562_Paclitaxel_30min_R1 1 SLPASPSTSDFCQTR 15 0 Q9Y2D8-2;Q9Y2D8-3;Q9Y2D8;S4R2Y6 Q9Y2D8-2 SSX2IP Afadin- and alpha-actinin-binding protein 2 S(1)LPAS(0.055)PS(0.437)T(0.437)S(0.067)DFCQT(0.003)R 156.67 0.00030689 39682000 1188.7 1224 1879.6 1346.1 1272.5 1285.2 1315.1 1485.6 1071.4 1829.1 TRUE FALSE 1205.345467 1357.640459 1405.071733 1259.767171 1445.836044 1513.112175 1564.63336 1359.389007 1174.312757 1456.328416 0.827660474 0.932235095 0.964804173 0.865029589 0.992795325 1.03899104 1.074368489 0.93343575 0.806351606 1 10.50812002 -6.774181207 24.97449358 0.979231105 0.904730517 0.194993005 0.075566892 421.5178609 826188.6985 0.025081697 0.028620809 1.68E-07 6.774181207 -0.074500589 S(ph)LPEEDVAEIQHAEEFLIKPESK ddPTM_K562_Paclitaxel_30min_R1 4 SLPEEDVAEIQHAEEFLIKPESK 23 1 O60832;H7C2Q9;H7C0M1;C9IYT0;O60832-2 O60832 DKC1 H/ACA ribonucleoprotein complex subunit 4 1 S(1)LPEEDVAEIQHAEEFLIKPESK;S(1)LPEEDVAEIQHAEEFLIKPESK;S(1)LPEEDVAEIQHAEEFLIKPESK;S(1)LPEEDVAEIQHAEEFLIKPESK 159.46 8.58E-19 100910000 18917.3 13266.6 44712.7 20345.4 14375.7 10296 10902.7 19865.6 15855.1 28597 TRUE FALSE 19182.20056 14715.09225 33424.42589 19040.53711 16333.91372 12121.85104 12971.43041 18177.89328 17378.0532 22768.9157 0.842473169 0.646279886 1.467984963 0.836251377 0.717377759 0.53238596 0.569699084 0.798364468 0.763235871 1 14.47477797 -6.520042392 23.92001481 0.70896664 0.985060812 0.199382704 0.22684884 97.23684545 820042.0144 0.067594473 0.089072152 3.02E-07 6.520042392 0.276094172 S(ph)LPLHGR ddPTM_K562_Paclitaxel_30min_R1 3 SLPLHGR 7 0 Q9BY07-5;E7EQT3 Q9BY07-5 SLC4A5 Anion exchange protein 1 S(1)LPLHGR;S(1)LPLHGR;S(1)LPLHGR 106.29 0.0066576 21989700 457.576 290.061 470.6 556.19 345.12 319.499 165.56 545.43 514.83 463.11 TRUE FALSE 463.9834757 321.7308409 351.7912097 520.5184628 392.1311869 376.1576617 196.9741457 499.092317 564.2817218 368.7279278 1.258335593 0.872542644 0.954067168 1.41165999 1.063470265 1.020149637 0.53419915 1.35355171 1.530347119 1 8.526412881 S(ph)LPS(ph)SPLLTHQSISVR ddPTM_K562_Paclitaxel_30min_R1 1 SLPSSPLLTHQSISVR 16 0 J3QQY7;J3KTM5 J3QQY7 TANC2 2 S(1)LPS(0.994)S(0.006)PLLTHQSISVR 202.34 8.40E-13 8938400 698.29 814.78 854.13 670 385.25 676.71 560.18 837.94 482.19 797.13 TRUE FALSE 708.0682144 903.7404358 638.4943178 627.0291988 437.7275723 796.715017 666.4712307 766.7517667 528.506504 634.6744684 1.115639985 1.423943267 1.006018596 0.98795403 0.689688327 1.255312852 1.050099325 1.208102429 0.8327206 1 9.309872997 -5.784692156 24.63297301 1.010030104 1.269791574 0.285107833 0.168282166 217.6220534 230539.172 0.043767048 0.091203671 1.64E-06 5.784692156 0.25976147 S(ph)LPTTVPES(ph)PNYR ddPTM_K562_Paclitaxel_30min_R1 6 SLPTTVPESPNYR 13 0 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 2 S(1)LPTTVPES(1)PNYR;S(1)LPTTVPES(1)PNYR;S(0.999)LPTT(0.001)VPES(1)PNYR;S(1)LPTTVPES(1)PNYR;S(0.999)LPTTVPES(1)PNYR;S(1)LPTTVPES(1)PNYR 234.63 9.81E-32 1699667000 18613.1 16555.6 21191.6 16266.3 13921.6 13521.2 15849.4 18797.6 18541.8 21084 TRUE FALSE 18873.74083 18363.1964 15841.51849 15223.05232 15817.95761 15918.99497 18856.74091 17200.62655 20322.82274 16787.06923 1.124302317 1.093889359 0.943673864 0.906832045 0.942270351 0.948289112 1.123289638 1.024635469 1.210623633 1 14.03506276 -7.764639282 24.99893298 1.091690148 0.989292578 0.240868644 0.083659087 128.7549299 1005867.062 0.036030171 0.025451889 1.72E-08 7.764639282 -0.10239757 S(ph)LPTTVPESPNYR ddPTM_K562_Paclitaxel_30min_R1 4 SLPTTVPESPNYR 13 0 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 1 S(1)LPTTVPESPNYR;S(1)LPTTVPESPNYR;S(1)LPTTVPESPNYR;S(1)LPTTVPESPNYR 255.54 2.03E-69 2429860000 2697.18 1944.1 3151.47 2630.51 2534.85 2748.66 2480.06 2953.58 2869.77 2857.21 TRUE FALSE 2734.948842 2156.363413 2355.842422 2461.800862 2880.139485 3236.096258 2950.638438 2702.654943 3145.424231 2274.909034 1.202223386 0.947889951 1.035576538 1.082153539 1.266046001 1.422516773 1.297035791 1.188027698 1.382659343 1 11.15159314 -6.741143866 4.536732829 1.28016361 1.052625249 0.362839384 0.123194019 0.185754283 9.116851009 0.036216095 0.045152289 1.81E-07 6.741143866 -0.22753836 S(ph)LQTLPTDSSTFDTDTFCPPRPKPVAR ddPTM_K562_Paclitaxel_30min_R1 1 SLQTLPTDSSTFDTDTFCPPRPKPVAR 27 2 B0QY95;Q9NQG6 B0QY95 MIEF1 Mitochondrial dynamics protein MID51 1 S(0.957)LQT(0.043)LPTDSSTFDTDTFCPPRPKPVAR 66.432 0.00053714 111540000 1266.9 897.18 1692.5 1256.1 1168.8 692.26 874.86 1309.6 1081.2 1692.9 TRUE FALSE 1284.640509 995.1371465 1265.207442 1175.539368 1328.010348 815.0225912 1040.860118 1198.341306 1185.054091 1347.886051 0.953077976 0.738294714 0.938660536 0.872135569 0.985254167 0.604667279 0.7722167 0.889052383 0.879194566 1 10.39648282 -9.148891336 1.774221014 0.998797248 0.838124208 0.158802772 0.108173837 1.114197128 6.992099864 0.105122132 0.029799385 7.10E-10 9.148891336 -0.16067304 S(ph)LRT(ph)AGS(ph)MPLGGR ddPTM_K562_Paclitaxel_30min_R1 1 SLRTAGSMPLGGR 13 1 C9JE72;A0A087WX19;A0A087WX45;Q6IPM2-4;Q6IPM2 C9JE72 IQCE IQ domain-containing protein E 3 S(1)LRT(1)AGS(1)MPLGGR 93.598 0.016433 43551000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 S(ph)LS(ph)PSHLTEDR ddPTM_K562_Paclitaxel_30min_R1 1 SLSPSHLTEDR 11 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 S(1)LS(0.901)PS(0.099)HLTEDR 167.84 0.0020164 21718000 2194.9 2188.3 3322.8 2762.6 2445.2 2281.6 2127.7 2980.7 1653.6 3137 TRUE FALSE 2225.635372 2427.225994 2483.918044 2585.419201 2778.277638 2686.209725 2531.419968 2727.47093 1812.435668 2497.677678 0.8910819 0.971793124 0.994491029 1.035129242 1.112344344 1.075482937 1.013509465 1.092002765 0.725648343 1 11.2863716 S(ph)LSDSESDDSK ddPTM_K562_Paclitaxel_30min_R1 1 SLSDSESDDSK 11 0 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 S(0.869)LS(0.13)DS(0.001)ESDDSK 196.02 3.17E-05 20729000 1311.5 1196.6 2667 1691.5 1234.9 1095.7 1074.4 1722.3 1062.3 2327.4 TRUE FALSE 1329.865046 1327.248835 1993.682865 1583.014761 1403.114287 1290.007011 1278.261791 1575.979865 1164.338661 1853.074602 0.717653269 0.716241447 1.07587836 0.854263913 0.757181759 0.696144132 0.689805899 0.850467576 0.628328001 1 10.85570525 -5.602713877 20.90339384 0.809870442 0.716321105 0.084348712 0.131763895 20.65587021 5401.767261 0.034426255 0.091083445 2.50E-06 5.602713877 -0.093549337 S(ph)LSDSESDDSKSK ddPTM_K562_Paclitaxel_30min_R1 2 SLSDSESDDSKSK 13 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 S(0.998)LS(0.001)DS(0.001)ESDDSKSK;S(0.998)LS(0.002)DSESDDSKSK 119.17 0.0063718 16046400 2934.6 2394.14 6430.8 3532.8 1956.86 2069.3 1539.44 2930 3136.4 4307.2 TRUE FALSE 2975.693454 2655.540302 4807.265005 3306.22202 2223.417462 2436.261301 1831.540704 2681.078212 3437.665234 3429.390276 0.867703357 0.77434765 1.401784171 0.964084503 0.648341916 0.710406546 0.534071819 0.781794429 1.002412953 1 11.74373638 -6.637314542 6.389050808 0.753935692 1.020871184 0.218967982 0.203541653 0.299526628 15.62134179 0.062367174 0.080672129 2.31E-07 6.637314542 0.266935492 S(ph)LSDVAQAQELCGGPVPGEAPNGQGCLHPGDPR ddPTM_K562_Paclitaxel_30min_R1 1 SLSDVAQAQELCGGPVPGEAPNGQGCLHPGDPR 33 0 Q96RG2;Q96RG2-2 Q96RG2 PASK PAS domain-containing serine/threonine-protein kinase 1 S(0.536)LS(0.464)DVAQAQELCGGPVPGEAPNGQGCLHPGDPR 102.5 2.04E-12 14150000 168.37 214.44 232.35 291.39 144.1 209.77 126.17 218.43 145.03 324.39 TRUE FALSE 170.7276995 237.8532844 173.6903688 272.7015496 163.7288596 246.9697642 150.1100988 199.8730081 158.9607795 258.2791399 0.661020087 0.920915582 0.672490891 1.055840397 0.633922119 0.956212586 0.581193274 0.773864309 0.615461162 1 8.012787318 -7.760010564 24.99953459 0.723785075 0.817471522 0.040735661 0.166380726 109.0246353 1907619.597 0.060449072 0.044249684 1.74E-08 7.760010564 0.093686447 S(ph)LSESSVIMDR ddPTM_K562_Paclitaxel_30min_R1 1 SLSESSVIMDR 11 0 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BNX5 H3BSS6 ZNF106 Zinc finger protein 106 1 S(0.999)LS(0.001)ESSVIMDR 178.95 0.0015601 138130000 1138.9 1035 1335.2 1352 866.08 1143.9 1245.7 1385.5 1019.4 1356.9 TRUE FALSE 1154.848114 1148.0048 998.1122465 1265.288771 984.0547589 1346.754604 1482.065072 1267.793127 1117.317925 1080.363035 1.06894449 1.062610218 0.923867454 1.171169996 0.910855635 1.246575975 1.371821345 1.173488064 1.034205992 1 10.07730047 -7.276245897 24.97870752 1.188973973 1.031666164 0.235283252 0.120282811 1064.366204 1795588.537 0.04233695 0.037487151 5.29E-08 7.276245897 -0.157307809 S(ph)LSFSDEMSSCR ddPTM_K562_Paclitaxel_30min_R1 1 SLSFSDEMSSCR 12 0 Q14153-2;Q14153 Q14153-2 FAM53B Protein FAM53B 1 S(0.466)LS(0.466)FS(0.067)DEMSSCR 151.16 0.00083544 19451000 898.67 751.37 999.46 992.27 687.56 739.67 749.98 1063.2 860.16 1124.6 TRUE FALSE 911.2541526 833.4071176 747.1339618 928.6302434 781.2173125 870.840089 892.2847898 972.8745237 942.7822113 895.4059027 1.017699515 0.930759017 0.834408127 1.03710534 0.872472819 0.972564606 0.996514304 1.086517881 1.052910427 1 9.806398019 -7.867391361 2.433462172 1.051217255 0.937604059 0.36798402 0.060155357 0.289437757 3.474614924 0.029206353 0.017922734 1.36E-08 7.867391361 -0.113613196 S(ph)LSGSS(ph)PCPK ddPTM_K562_Paclitaxel_30min_R1 2 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.999)LS(0.001)GS(0.207)S(0.793)PCPK;S(1)LSGS(0.206)S(0.794)PCPK 128.88 0.0065097 58212000 9540.1 8630.1 18134.6 11136.3 7797.2 7089.8 7183.4 11663.2 9155.2 12719.4 TRUE FALSE 9673.690834 9572.363503 13556.29594 10422.06756 8859.310648 8347.076484 8546.41265 10672.33836 10034.59787 10127.1793 0.955220654 0.94521517 1.338605306 1.029118499 0.874805352 0.82422521 0.843908496 1.053831284 0.990858123 1 13.30594478 -6.568426043 7.32772439 0.926037159 1.085354789 0.238352393 0.121036727 0.3060208 40.18603419 0.038121522 0.049515416 2.70E-07 6.568426043 0.159317629 S(ph)LSIESLCPEDGHR ddPTM_K562_Paclitaxel_30min_R1 3 SLSIESLCPEDGHR 14 0 Q92502;Q92502-2 Q92502 STARD8 StAR-related lipid transfer protein 8 1 S(0.825)LS(0.169)IES(0.006)LCPEDGHR;S(0.595)LS(0.403)IES(0.001)LCPEDGHR;S(0.57)LS(0.43)IESLCPEDGHR 140.68 4.39E-06 56635000 7321.1 7077.7 8609.8 7204.5 6199.6 6338.3 6770.4 7993.5 7139.4 9176.4 TRUE FALSE 7423.617988 7850.467221 6436.149505 6742.435616 7044.09048 7462.308511 8055.048056 7314.402281 7825.17127 7306.244643 1.016064798 1.074487319 0.880910758 0.922831899 0.964119164 1.02136034 1.102488139 1.00111653 1.071025082 1 12.83491435 -7.389195839 4.340609633 1.045745301 0.969884679 0.271205279 0.055942056 0.330099449 10.13197943 0.021697413 0.018892882 4.08E-08 7.389195839 -0.075860621 S(ph)LSLESTDR ddPTM_K562_Paclitaxel_30min_R1 2 SLSLESTDR 9 0 Q5VT25-2;A0A0A0MRJ1;H0Y5V1;A0A0A0MRJ0;Q5VT25-3;Q5VT25-4;Q5VT25-5;Q5VT25;Q5VT25-6;H0Y7V8 Q5VT25-2 CDC42BPA Serine/threonine-protein kinase MRCK alpha;Non-specific serine/threonine protein kinase 1 S(0.878)LS(0.121)LEST(0.001)DR;S(0.947)LS(0.053)LESTDR 93.442 0.014786 8711700 1508.26 1419.37 2152.14 1704.36 1127.26 1268.95 1224.57 1580.96 994.92 2083.8 TRUE FALSE 1529.380293 1574.341617 1608.80564 1595.049978 1280.811897 1493.980466 1456.925765 1446.64758 1090.486511 1659.120416 0.921801865 0.948901358 0.969673825 0.961382888 0.771982482 0.900465362 0.878131419 0.871936459 0.657267852 1 10.69620288 -6.738100147 24.99641049 0.844494191 0.95170398 0.267222924 0.084160335 310.8545658 332925.095 0.024020734 0.030991985 1.83E-07 6.738100147 0.107209788 S(ph)LSLQPQLTQR ddPTM_K562_Paclitaxel_30min_R1 1 SLSLQPQLTQR 11 0 P21731 P21731 TBXA2R Thromboxane A2 receptor 1 S(0.986)LS(0.014)LQPQLTQR 172.33 0.00030335 26534000 458.42 362.93 611.94 334.75 377.15 519.58 362.3 395.65 353.91 494.82 TRUE FALSE 464.8392943 402.5559248 457.4481786 313.2806333 428.5242152 611.7202177 431.0445337 362.0370629 387.9046368 393.9754124 1.179868793 1.021779309 1.161108445 0.795178134 1.087692789 1.552686281 1.094089936 0.91893314 0.984590979 1 8.621961785 -8.168717221 6.18859164 0.964809568 1.128012079 0.147777395 0.176658797 0.498176787 27.25659441 0.090880078 0.051886529 6.78E-09 8.168717221 0.163202511 S(ph)LSPGGAALGYR ddPTM_K562_Paclitaxel_30min_R1 4 SLSPGGAALGYR 12 0 A0A494C001;A0A499FJY3;A0A087WWP4;Q96T37-4;Q96T37-2;Q96T37-3;Q96T37 A0A494C001 RBM15 Putative RNA-binding protein 15 1 S(0.999)LS(0.001)PGGAALGYR;S(0.999)LS(0.001)PGGAALGYR;S(1)LSPGGAALGYR;S(1)LSPGGAALGYR 222.72 2.97E-22 4662780000 19612.1 18135.4 23117.3 20015 16674.6 15115.9 16837.3 20633.9 14676.5 22154.5 TRUE FALSE 19886.72991 20115.4843 17281.0517 18731.32748 18945.96282 17796.49263 20032.08978 18880.9214 16086.2434 17639.40074 1.127403941 1.140372318 0.979684739 1.061902712 1.074070662 1.008905738 1.135644576 1.070383381 0.911949541 1 14.10651393 -2 0.18958816 0.998318132 1.540292264 0.253234978 0.061598196 91.7773303 1.069969691 0.130799836 14.55017182 0.01 2 0.541974132 S(ph)LSPNHNTLQTLK ddPTM_K562_Paclitaxel_30min_R1 1 SLSPNHNTLQTLK 13 0 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 S(0.671)LS(0.329)PNHNTLQTLK 130.27 0.00040925 26311000 2142.1 1897 3870.6 2393.2 1735.3 1645.8 1324.4 2398.5 2149 2809.5 TRUE FALSE 2172.096009 2104.120875 2893.419159 2239.710864 1971.677239 1937.659522 1575.697986 2194.732454 2355.421052 2236.922358 0.971019848 0.940632055 1.293482158 1.001246581 0.881424083 0.866216708 0.704404416 0.981139308 1.052973986 1 11.12729947 -6.583823739 5.48743661 0.902181314 1.069723289 0.232692985 0.12497151 0.278296679 16.69123926 0.039082457 0.05113189 2.61E-07 6.583823739 0.167541975 S(ph)LSPPQSQSK ddPTM_K562_Paclitaxel_30min_R1 2 SLSPPQSQSK 10 0 I3L3C6;B4DWA1;I3L4C2;Q9UQB8-3;Q9UQB8-5;Q9UQB8-4;Q9UQB8-6;Q9UQB8-2;Q9UQB8;I3L0Y9 I3L3C6;I3L0Y9 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 1 S(0.811)LS(0.184)PPQS(0.004)QSK;S(0.997)LS(0.003)PPQSQSK 148.78 0.00033817 72603000 10259.1 9113.9 17607.7 11796.3 9159.1 9047.2 7606.1 12167.8 10761.8 13843.9 TRUE FALSE 10402.75905 10108.98642 13162.41837 11039.73812 10406.72448 10651.59389 9049.317768 11134.06944 11795.51898 11022.50558 0.943774442 0.917122368 1.194140322 1.001563395 0.9441342 0.966349603 0.820985547 1.010121461 1.070130461 1 13.42816459 -6.537810025 17.15220204 0.962649597 1.023160315 0.056156027 0.090777919 16.60625865 19072.00984 0.028107695 0.036375889 2.90E-07 6.537810025 0.060510718 S(ph)LSPS(ph)HLTEDR ddPTM_K562_Paclitaxel_30min_R1 1 SLSPSHLTEDR 11 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 2 S(1)LS(0.015)PS(0.98)HLT(0.005)EDR 143.55 0.0027138 20772000 2374.4 2159.8 3728.8 2955.5 2220.8 2313.9 2448.4 3168 1987.7 3144.5 TRUE FALSE 2407.648926 2395.614268 2787.418323 2765.947458 2523.310558 2724.237676 2912.971118 2898.858626 2178.627466 2503.649174 0.96165587 0.956849024 1.113342217 1.104766389 1.007853091 1.088106794 1.163490136 1.157853367 0.87018081 1 11.2898167 -5.749212955 24.80872259 1.072816005 0.959252357 0.193559168 0.083033182 298.7961802 606277.388 0.020902749 0.054424128 1.78E-06 5.749212955 -0.113563648 S(ph)LSPSHLTEDR ddPTM_K562_Paclitaxel_30min_R1 2 SLSPSHLTEDR 11 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 S(0.876)LS(0.088)PSHLT(0.036)EDR;S(0.611)LS(0.284)PS(0.105)HLTEDR 138.2 0.00075869 316392000 7754.4 7693.8 9029.8 8653.1 7523.9 7214.1 6773.4 7961.5 6917.9 8375.3 TRUE FALSE 7862.985524 8533.835103 6750.115311 8098.128896 8548.782561 8493.419344 8058.61729 7285.120881 7582.395205 6668.409263 1.179139614 1.279740755 1.012252704 1.214401903 1.281982288 1.273679975 1.208476711 1.092482569 1.137062065 1 12.70312693 -8.882328772 1.179429863 1.008738873 1.206407199 0.388320009 0.078093747 0.495534189 1.520137068 0.077225662 0.02475845 1.31E-09 8.882328772 0.197668326 S(ph)LSPVAAPPLREPR ddPTM_K562_Paclitaxel_30min_R1 1 SLSPVAAPPLREPR 14 1 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 S(0.705)LS(0.295)PVAAPPLREPR 75.574 0.028468 22491000 3650.1 3609.1 4822.3 3721.4 2938.6 3235.3 3023.8 3599.6 2979.3 3699.7 TRUE FALSE 3701.212662 4003.153743 3604.850724 3482.72606 3338.887071 3809.035029 3597.550265 3293.791512 3265.475077 2945.699109 1.256480219 1.358982569 1.223767462 1.182308828 1.133478657 1.293083539 1.221289117 1.118169708 1.108556901 1 11.52439436 -13.33741983 0.041063611 6.81E-07 1.880222938 0.661852238 0.057231728 373.6721404 1.547763344 55.44003595 22.04104273 4.60E-14 13.33741983 1.880222257 S(ph)LSSPTVTLSAPLEGAK ddPTM_K562_Paclitaxel_30min_R1 1 SLSSPTVTLSAPLEGAK 17 0 A0A1B0GVY1;Q96PU5-9;Q96PU5-4;Q96PU5-2;Q96PU5-6;Q96PU5-5;Q96PU5-7;Q96PU5 A0A1B0GVY1 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 S(0.718)LS(0.28)S(0.002)PTVTLSAPLEGAK 183.75 1.81E-10 24035000 3560.6 2995.2 7069.8 4562.3 3459.8 3133.3 2761.6 4519.5 3143.5 5513.5 TRUE FALSE 3610.459385 3322.226065 5284.941552 4269.694498 3931.083335 3688.946761 3285.599183 4135.540265 3445.447221 4389.845674 0.822457019 0.756797918 1.203901445 0.97262975 0.895494655 0.840336321 0.748454371 0.942069624 0.784867505 1 12.09995451 -6.993580934 4.603189998 0.853330635 0.944434559 0.069009073 0.127865016 0.512944884 28.35447906 0.043169043 0.046959341 1.01E-07 6.993580934 0.091103924 S(ph)LSVPVDLSR ddPTM_K562_Paclitaxel_30min_R1 1 SLSVPVDLSR 10 0 Q9NYF3;D6RHW3 Q9NYF3 FAM53C Protein FAM53C 1 S(0.869)LS(0.131)VPVDLSR 149.94 0.00030785 78940000 3056.4 3052 4141.7 2980.5 3013.8 2841.2 2828.9 3495.3 2753.5 3788.8 TRUE FALSE 3099.19903 3385.227681 3096.076611 2789.34407 3424.330584 3345.046928 3365.669007 3198.352448 3017.985978 3016.64048 1.027367713 1.122184663 1.026332648 0.92465247 1.135147064 1.108864961 1.115701069 1.060236534 1.000446025 1 11.55872705 -4.984170759 16.92403517 1.05885837 0.969025519 0.012701235 0.064427705 4018402.588 89333961.45 0.016660595 8946708.205 1.04E-05 4.984170759 -0.089832851 S(ph)LTNSHLEK ddPTM_K562_Paclitaxel_30min_R1 2 SLTNSHLEK 9 0 F8VX12;F8VX04;Q9H2H9 F8VX12 SLC38A1 Sodium-coupled neutral amino acid transporter 1 1 S(0.96)LT(0.039)NS(0.001)HLEK;S(0.985)LT(0.015)NSHLEK 101.56 0.0075349 204039000 9560.1 8094.9 16810.4 12094.7 8339.1 7989.1 7339.6 11869.3 7658.1 12906.9 TRUE FALSE 9693.970895 8978.728557 12566.40661 11319.00008 9475.026602 9405.854712 8732.250785 10860.92888 8393.694722 10276.4667 0.943317502 0.873717477 1.222833391 1.101448622 0.922012096 0.915281 0.849732797 1.056873846 0.816788004 1 13.32705669 -6.783023882 24.62474339 0.925197496 1.037178696 0.197733106 0.107059745 341.06228 389099.6439 0.034456376 0.039107649 1.65E-07 6.783023882 0.1119812 S(ph)LVPDALERK ddPTM_K562_Paclitaxel_30min_R1 1 SLVPDALERK 10 1 I3L4W4;I3L3N0;I3L4B4;Q9GZT4 I3L4W4 SRR Serine racemase 1 S(1)LVPDALERK 78.548 0.023833 6595400 6876.4 6764 6956 7173.8 7262.4 7153.9 6901.9 7967.8 8671.5 7441.4 TRUE FALSE 6972.690816 7502.516394 5199.871769 6713.704577 8251.661833 8422.543719 8211.499495 7290.885657 9504.43632 5924.838595 1.176857513 1.266281988 0.877639397 1.133145565 1.392723481 1.421565091 1.385944843 1.230562747 1.604167973 1 12.53256014 -6.723711887 6.829515267 1.357179243 1.105800225 0.290140991 0.171534966 0.225123119 29.23296053 0.049134602 0.062645529 1.89E-07 6.723711887 -0.251379018 S(ph)MDELNHDFQALALEGR ddPTM_K562_Paclitaxel_30min_R1 4 SMDELNHDFQALALEGR 17 0 H0YEH2;Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;E9PR38;Q14671-4 H0YEH2 PUM1 Pumilio homolog 1 1 S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR;S(1)MDELNHDFQALALEGR 165.24 5.23E-08 134431000 7424 7406.3 9760.2 8063.7 6990.9 6622.11 7145.6 8769.4 7439.5 10588 TRUE FALSE 7527.958905 8214.94488 7296.116797 7546.530374 7943.178937 7796.448229 8501.440297 8024.384733 8154.097216 8430.159788 0.892979385 0.974470839 0.865477877 0.895182365 0.942233497 0.924828049 1.008455416 0.951866268 0.967252985 1 13.04134426 -7.642383621 6.420151687 0.977652712 0.915632026 0.514788352 0.031395559 0.194092393 10.14631377 0.012150437 0.00934902 2.28E-08 7.642383621 -0.062020686 S(ph)MGYDDLDYGMMSDYGTAR ddPTM_K562_Paclitaxel_30min_R1 1 SMGYDDLDYGMMSDYGTAR 19 0 O60716;O60716-21;O60716-2;O60716-10;O60716-9;O60716-17;O60716-5;O60716-3;A0A669KB05;O60716-11;C9JZR2;O60716-18;O60716-19;O60716-13;O60716-23;O60716-14;O60716-12;O60716-7;O60716-4;O60716-22;O60716-6;O60716-8;A0A669KB62;O60716-16;O60716-15;O60716-24;O60716-20 O60716 CTNND1 Catenin delta-1 1 S(0.998)MGY(0.001)DDLDYGMMSDYGTAR 69.605 0.022629 0 136.75 50.41 107.71 121.11 0 47.857 0 153.6 0 52.53 TRUE FALSE 138.6649219 55.91393428 80.51727836 113.3425467 0 56.343767 0 140.5507213 0 41.82435717 3.315410715 1.336874923 1.925128892 2.709965062 0 1.347152014 0 3.360499259 0 1 5.386271461 -2.000000052 0.600508115 1.164817276 121.8956435 0.24347069 1.081194259 266.5134165 2.063529355 0.471307781 42219.88395 0.009999999 2.000000052 120.7308262 S(ph)MKGLRWEDTR ddPTM_K562_Paclitaxel_30min_R1 2 SMKGLRWEDTR 11 2 Q96LL9 Q96LL9 DNAJC30 DnaJ homolog subfamily C member 30 1 S(1)MKGLRWEDTR;S(1)MKGLRWEDTR 55.401 0.027295 70944000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 S(ph)MKMT(ph)MYADEVES(ph)QLK ddPTM_K562_Paclitaxel_30min_R1 1 SMKMTMYADEVESQLK 16 1 Q53F19;Q53F19-2 Q53F19 C17orf85 Uncharacterized protein C17orf85 3 S(0.976)MKMT(0.536)MY(0.488)ADEVES(1)QLK 46.408 0.028389 3700800 628.71 537.45 646.6 502.92 938.56 451.61 471.04 617.43 496.66 870.6 TRUE FALSE 637.5138797 596.1306085 483.357833 470.6649622 1066.407762 531.6966926 560.417381 564.9754676 544.3664121 693.1712421 0.919706187 0.860004819 0.697313742 0.679002436 1.538447785 0.767049555 0.808483311 0.815059012 0.785327462 1 9.437067992 -4.560972795 4.189430113 0.880278704 3.664271997 0.001958991 0.235196832 8019.73124 1644.46695 0.060539475 207754.3592 2.75E-05 4.560972795 2.783993293 S(ph)MMLVPEPTRK ddPTM_K562_Paclitaxel_30min_R1 1 SMMLVPEPTRK 11 1 C9JG08;Q68DN1 C9JG08 C2orf16 Uncharacterized protein C2orf16 1 S(1)MMLVPEPTRK 70.816 0.021633 6191800 4287.2 3782.3 7544 5344.8 3818.5 3615.9 2820 4523.1 2550.1 5553.3 TRUE FALSE 4347.234027 4195.264305 5639.423897 5002.00845 4338.644348 4257.129095 3355.080279 4138.834423 2795.048499 4421.534412 0.983195792 0.948825433 1.275444986 1.131283393 0.9812531 0.962817135 0.758804516 0.936062922 0.632144464 1 12.1103314 -7.349432695 1.885436146 0.82736088 1.083165218 0.426542309 0.126737726 0.328155665 2.300816786 0.053924204 0.046392841 4.47E-08 7.349432695 0.255804338 S(ph)MS(ph)FPT(ph)GKS(ph)DRGFR ddPTM_K562_Paclitaxel_30min_R1 1 SMSFPTGKSDRGFR 14 2 Q01780-2;Q01780 Q01780-2 EXOSC10 Exosome component 10 4 S(1)MS(1)FPT(1)GKS(1)DRGFR 45.722 0.030309 0 780.63 509.45 382.61 532.61 500.85 612.27 537.9 446.08 475.74 425.19 TRUE FALSE 791.5612284 565.0734738 286.0153734 498.4507785 569.0742495 720.8474878 639.963717 408.1827197 521.4369527 338.5360446 2.33818892 1.669167827 0.844859441 1.472371366 1.680985699 2.12930794 1.890385757 1.20572898 1.540270116 1 8.403165638 -8.998172897 1.272160774 1.026497615 1.668987583 0.208128621 0.400053258 0.86241095 3.145208356 0.409363238 0.126482111 1.00E-09 8.998172897 0.642489968 S(ph)MSIDDTPR ddPTM_K562_Paclitaxel_30min_R1 2 SMSIDDTPR 9 0 Q96N67-4;Q96N67-3;Q96N67-5;Q96N67-2;Q96N67-6;Q96N67;A0A0C4DGY6;A0A1B0GVW2;A0A1B0GUE9;Q96N67-7 Q96N67-4 DOCK7 Dedicator of cytokinesis protein 7 1 S(1)MSIDDTPR;S(0.997)MS(0.003)IDDTPR 215.72 1.40E-14 68879000 5210.3 4747.2 6465.7 5364.3 4473.1 3868.7 4388.9 5535.9 5821.1 5932.3 TRUE FALSE 5283.260275 5265.51535 4833.354068 5020.257808 5082.41195 4554.759626 5221.670863 5065.590741 6380.242664 4723.294004 1.118554185 1.114797289 1.023301549 1.062872183 1.07603125 0.964318466 1.105514681 1.07246992 1.350803625 1 12.20557762 -8.56998642 24.99992121 1.187480528 1.064837935 0.185791448 0.0898988 166.0884507 88139.77466 0.056084848 0.021198093 2.69E-09 8.56998642 -0.122642593 S(ph)MVS(ph)T(ph)IMK ddPTM_K562_Paclitaxel_30min_R1 1 SMVSTIMK 8 0 Q9NR09;A0A3B3IUB9 Q9NR09 BIRC6 Baculoviral IAP repeat-containing protein 6 3 S(1)MVS(1)T(1)IMK 51.762 0.027184 10931000 382.31 252.79 449.25 473.36 388.25 404.26 306.05 219 158.07 300.56 TRUE FALSE 387.6635195 280.3904671 335.8312812 443.0008083 441.1362231 475.9498349 364.1213898 200.394583 173.2533298 239.305707 1.619951001 1.17168316 1.403356758 1.851191991 1.843400346 1.988877912 1.5215742 0.837399933 0.723983276 1 7.902710993 -8.227980531 4.564827512 0.827944147 1.639389297 0.706269993 0.229658049 0.123115017 6.310392132 0.135109005 0.071745254 5.92E-09 8.227980531 0.811445149 S(ph)NDRNSMDIQCEVDALLER ddPTM_K562_Paclitaxel_30min_R1 2 SNDRNSMDIQCEVDALLER 19 1 Q02241-2;A0A2U3TZL8;Q02241;H7BYN4;A0A2R8Y531;H0YME6 Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 S(0.518)NDRNS(0.482)MDIQCEVDALLER;S(0.776)NDRNS(0.224)MDIQCEVDALLER 136.35 8.66E-10 37441000 2010.39 2019.29 2098.42 2108.53 1790.75 1667.71 1717.21 2459.41 1774.87 2305.44 TRUE FALSE 2038.541663 2239.762911 1568.647918 1973.298323 2034.680468 1963.454953 2043.041633 2250.467769 1945.354194 1835.590063 1.110564774 1.22018688 0.854574205 1.07502125 1.108461257 1.06965874 1.113016285 1.226018715 1.059797737 1 10.84202819 -7.78823692 6.250504923 1.118964796 1.071463694 0.002160705 0.100601452 0.669643667 82.27536983 0.042329161 0.02920491 1.63E-08 7.78823692 -0.047501102 S(ph)NPSIQATLNK ddPTM_K562_Paclitaxel_30min_R1 2 SNPSIQATLNK 11 0 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 S(1)NPSIQATLNK;S(1)NPSIQATLNK 157.2 0.00057631 28814000 2892.1 2639.06 4678.3 2957.33 2349.54 2157.52 2068.49 3316.6 2095.71 3869.7 TRUE FALSE 2932.598323 2927.201496 3497.205305 2767.66009 2669.587126 2540.125879 2460.975179 3034.834128 2297.012309 3081.053016 0.951816898 0.95006528 1.135068201 0.898283826 0.866452837 0.82443433 0.798744834 0.984998996 0.74552833 1 11.58920779 -6.500656142 23.36090681 0.86515419 1.007855747 0.349550408 0.086942287 349.5685681 367473.7429 0.023503958 0.034479803 3.16E-07 6.500656142 0.142701557 S(ph)NQIPTEVR ddPTM_K562_Paclitaxel_30min_R1 2 SNQIPTEVR 9 0 Q9BWH2 Q9BWH2 FUNDC2 FUN14 domain-containing protein 2 1 S(1)NQIPTEVR;S(1)NQIPTEVR 125.36 0.0016269 62659000 1580.13 1538.02 2026.04 1206 1667.37 1303.82 1275.68 1865.03 1448.63 1937.58 TRUE FALSE 1602.256695 1705.946225 1514.541144 1128.652558 1894.494023 1535.03417 1517.733621 1706.58406 1587.777384 1542.700132 1.038605405 1.105818421 0.981746946 0.731608518 1.228037765 0.995030815 0.983816355 1.106231875 1.029219711 1 10.59124195 S(ph)NSFNNPLGNR ddPTM_K562_Paclitaxel_30min_R1 2 SNSFNNPLGNR 11 0 O95835-2;O95835 O95835-2 LATS1 Serine/threonine-protein kinase LATS1 1 S(0.889)NS(0.111)FNNPLGNR;S(0.722)NS(0.278)FNNPLGNR 166.62 0.00043894 95230000 2521 2434 3852.9 3291.2 2918.9 2837.3 2505.1 3640.2 2982.3 3809.1 TRUE FALSE 2556.301778 2699.752351 2880.187743 3080.117163 3316.503597 3340.455317 2980.429648 3330.942289 3268.76324 3032.803329 0.842884124 0.890183787 0.949678377 1.015600693 1.093543906 1.101441457 0.982730934 1.098304746 1.077802576 1 11.56643623 -6.019237771 1.475954751 1.062161567 0.848226312 0.794856712 0.039042396 0.191551091 0.775762186 0.012321891 0.039628721 9.57E-07 6.019237771 -0.213935255 S(ph)NSGRELTDEEILASVMIK ddPTM_K562_Paclitaxel_30min_R1 2 SNSGRELTDEEILASVMIK 19 1 Q5JSH3-4;Q5JSH3-2;Q5JSH3;H7BY83 Q5JSH3-4 WDR44 WD repeat-containing protein 44 1 S(0.499)NS(0.499)GRELT(0.001)DEEILASVMIK;S(0.593)NS(0.407)GRELTDEEILASVMIK 121.01 2.35E-05 103862000 6884.9 5479.6 10739.8 7316.8 5482.9 4741 4700.2 6955 6385.8 9043.5 TRUE FALSE 6981.309842 6077.881259 8028.404662 6847.533197 6229.763806 5581.749783 5592.038413 6364.129338 6999.184623 7200.429736 0.969568498 0.844099794 1.114989654 0.950989517 0.865193334 0.775196757 0.776625649 0.883854099 0.972050958 1 12.8138673 -6.719646467 5.010223301 0.862428672 0.973126551 0.182583629 0.091274005 0.296858139 16.97216838 0.028330022 0.035942852 1.91E-07 6.719646467 0.110697879 S(ph)NSVSLVPPGSSHTLPR ddPTM_K562_Paclitaxel_30min_R1 1 SNSVSLVPPGSSHTLPR 17 0 Q6R327-3;Q6R327 Q6R327-3 RICTOR Rapamycin-insensitive companion of mTOR 1 S(0.471)NS(0.471)VS(0.058)LVPPGSSHTLPR 71.894 0.021091 15665000 1317.2 1012.4 1098.2 1162.5 972.4 1149.3 1188.8 1509.8 905.55 1547 TRUE FALSE 1335.644864 1122.937256 820.9458276 1087.942453 1104.857343 1353.112218 1414.368594 1381.533066 992.5321236 1231.720551 1.084373288 0.911681838 0.666503313 0.883270521 0.897003255 1.098554552 1.148286917 1.121628656 0.805809502 1 10.26645926 -7.181507982 5.695481201 1.049223215 0.875316441 0.235617212 0.129654048 0.313989694 17.24407426 0.045017797 0.044937245 6.58E-08 7.181507982 -0.173906774 S(ph)PAAPGQSPTGSVCYER ddPTM_K562_Paclitaxel_30min_R1 1 SPAAPGQSPTGSVCYER 17 0 O75534;O75534-4 O75534 CSDE1 Cold shock domain-containing protein E1 1 S(0.453)PAAPGQS(0.026)PT(0.388)GS(0.132)VCY(0.001)ER 103.14 0.0017436 54918000 1761 1815.5 2324.7 2352.6 2160.4 1666 1782.8 2208.4 1586.2 2664 TRUE FALSE 1785.659433 2013.72243 1737.800733 2201.714766 2454.683056 1961.441708 2121.076993 2020.782636 1738.561597 2121.075338 0.841865162 0.949387508 0.819301749 1.038018182 1.157282352 0.924739293 1.00000078 0.952716106 0.819660465 1 11.05058015 -6.264224593 24.9818624 0.987999586 0.878105077 0.266721108 0.086535401 358.4166608 3214813.562 0.025301693 0.039482942 5.44E-07 6.264224593 -0.109894509 S(ph)PAGSQQQFGYSPGQQQTHPQGSPR ddPTM_K562_Paclitaxel_30min_R1 1 SPAGSQQQFGYSPGQQQTHPQGSPR 25 0 Q8TAP9 Q8TAP9 MPLKIP M-phase-specific PLK1-interacting protein 1 S(0.958)PAGS(0.042)QQQFGYSPGQQQTHPQGSPR 158.75 9.49E-26 7595900 213.64 106.64 173.21 208.88 145.39 190.88 254.8 249.88 118.31 326.4 TRUE FALSE 216.6316191 118.2833158 129.4809933 195.4833717 165.1945795 224.7298879 303.1469699 228.6511343 129.6742041 259.8795008 0.833584867 0.455146772 0.498234731 0.752207739 0.635658368 0.864746497 1.166490504 0.879835207 0.498978195 1 8.021699029 -7.271195261 4.741218715 0.894504905 0.622178214 0.304480261 0.186234872 0.245865216 15.78287696 0.067581405 0.062543364 5.36E-08 7.271195261 -0.272326691 S(ph)PAKSPNPSTPR ddPTM_K562_Paclitaxel_30min_R1 1 SPAKSPNPSTPR 12 1 O76021;O76021-2;J3QSV6 O76021 RSL1D1 Ribosomal L1 domain-containing protein 1 1 S(1)PAKSPNPSTPR 100.18 0.028686 2291300 508.46 447.4 677.89 403.72 378.06 369.38 427.4 638.92 418.69 690.37 TRUE FALSE 515.5800087 496.248645 506.7482855 377.8272062 429.5581726 434.8843566 508.4969188 584.639758 458.9070453 549.672215 0.937977206 0.902808313 0.921909952 0.687368209 0.7814806 0.791170346 0.925091181 1.063615264 0.834874008 1 9.102427745 -10.89332984 6.3710351 1.000000011 0.870950857 0.131621525 0.098756767 1.77E-08 2.94E-09 0.104679361 0.025388472 1.28E-11 10.89332984 -0.129049155 S(ph)PART(ph)PPSEEDSAEAER ddPTM_K562_Paclitaxel_30min_R1 1 SPARTPPSEEDSAEAER 17 1 O43765;K7EMD6 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 2 S(1)PART(1)PPSEEDSAEAER 73.405 0.020471 0 1061.5 1162.6 1568.4 1184.5 898.91 987.69 1098.1 1499.3 732.22 1352.2 TRUE FALSE 1076.364275 1289.5366 1172.438022 1108.531472 1021.356761 1162.842954 1306.458743 1371.925107 802.5530026 1076.620898 0.999761641 1.197762929 1.088998017 1.029639564 0.948668898 1.080085809 1.213480757 1.274288015 0.745436954 1 10.07229462 -8.768369674 24.9999869 0.872718525 1.101889764 0.409334406 0.111146382 180.294918 650357.7352 0.102289534 0.02869629 1.70E-09 8.768369674 0.22917124 S(ph)PARTPPSEEDSAEAER ddPTM_K562_Paclitaxel_30min_R1 1 SPARTPPSEEDSAEAER 17 1 O43765;K7EMD6 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 1 S(0.991)PART(0.009)PPSEEDSAEAER 83.948 0.0083075 113980000 414.31 647.38 790.11 619.94 761.09 742.85 616.38 734.84 554.51 729.47 TRUE FALSE 420.1116183 718.0631377 590.6369585 580.1798231 864.7633434 874.5840174 733.3348873 672.4107553 607.7731631 580.8036136 0.723328176 1.236326911 1.016930585 0.998925987 1.488908339 1.505817107 1.262621082 1.157724814 1.046434886 1 9.181906619 -5.259170738 24.61770111 1.205374915 0.723327966 0.375836364 0.17964844 191.6383141 2079353.161 0.048665147 0.314201704 5.51E-06 5.259170738 -0.482046949 S(ph)PASPRVPPVPDYVAHPER ddPTM_K562_Paclitaxel_30min_R1 1 SPASPRVPPVPDYVAHPER 19 1 A6NCC9;E9PME3;C9JHT9;C9JJV1;Q9Y5U2-2;Q9Y5U2 A6NCC9 TSSC4 Protein TSSC4 1 S(0.5)PAS(0.5)PRVPPVPDYVAHPER 97.095 0.00060273 39667000 2873.4 2773 3802.5 3393.8 2975.7 2624.4 2370.2 3153 3887.2 2618.3 TRUE FALSE 2913.636465 3075.765518 2842.511846 3176.136858 3381.040719 3089.800492 2819.933077 2885.13297 4260.582928 2084.689023 1.397636018 1.475407355 1.363518403 1.523554268 1.621844161 1.482139762 1.352687641 1.383963238 2.043749874 1 11.02561647 S(ph)PCGLTEQYLHK ddPTM_K562_Paclitaxel_30min_R1 1 SPCGLTEQYLHK 12 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 S(0.998)PCGLT(0.002)EQYLHK 121.92 0.0015627 71913000 2372.4 1973.5 3207 2521.2 1843.5 2020 1880.8 2431.9 1793 2929.2 TRUE FALSE 2405.620919 2188.973404 2397.353186 2359.501516 2094.615911 2378.218638 2237.671982 2225.294916 1965.225661 2332.227432 1.031469267 0.938576304 1.027924272 1.011694436 0.898118203 1.019719863 0.95945702 0.954150048 0.842638944 1 11.18749277 -8.330595547 2.889718466 0.917953984 0.983848766 0.170207361 0.053856992 0.429951612 6.95013716 0.033474887 0.014155699 4.67E-09 8.330595547 0.065894781 S(ph)PFEGAVTESQSLFSDNFR ddPTM_K562_Paclitaxel_30min_R1 2 SPFEGAVTESQSLFSDNFR 19 0 O95628-3;O95628-2;O95628;O95628-8;O95628-4;O95628-7;O95628-9;O95628-10;O95628-6;O95628-5 O95628-3 CNOT4 CCR4-NOT transcription complex subunit 4 1 S(1)PFEGAVTESQSLFSDNFR;S(1)PFEGAVTESQSLFSDNFR 176.85 3.44E-14 33984000 401.33 688.35 806.18 606.02 619.29 491.91 792.12 1106.78 329.73 1167.18 TRUE FALSE 406.9498582 763.5063809 602.6498883 567.1525896 703.6477827 579.1433317 942.4206349 1012.752131 361.4020398 929.3080753 0.437906297 0.821585867 0.648493115 0.610295557 0.75717386 0.623198428 1.014110024 1.089791596 0.388893683 1 9.860013134 -7.745175762 24.9744681 0.880681476 0.660613956 0.226250515 0.201627301 362.763993 557061.8807 0.074537982 0.057558893 1.80E-08 7.745175762 -0.22006752 S(ph)PFEIISPPAS(ph)PPEMVGQR ddPTM_K562_Paclitaxel_30min_R1 1 SPFEIISPPASPPEMVGQR 19 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 2 S(0.936)PFEIIS(0.065)PPAS(0.999)PPEMVGQR 107.18 0.0034961 46957000 1751.6 1634.1 1978.3 1765.7 1695.7 1449.9 1417.3 1947.6 1287.4 2052.4 TRUE FALSE 1776.127804 1812.516564 1478.853698 1652.455905 1926.683048 1707.019407 1686.225276 1782.139223 1411.060522 1634.119753 1.086901863 1.109169974 0.904984898 1.011220813 1.179034183 1.044610962 1.031885988 1.090580552 0.863498847 1 10.674298 -8.751956104 24.99068542 0.931749407 1.055202489 0.31418372 0.074145194 216.3952678 570263.4575 0.052722919 0.019351857 1.77E-09 8.751956104 0.123453082 S(ph)PFEIISPPASPPEMVGQR ddPTM_K562_Paclitaxel_30min_R1 2 SPFEIISPPASPPEMVGQR 19 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 S(0.99)PFEIIS(0.009)PPASPPEMVGQR;S(1)PFEIISPPASPPEMVGQR 94.639 0.0012595 21499000 929.51 787.9 1314.16 868.49 828.5 834.71 803.79 865.39 636.77 1032.84 TRUE FALSE 942.5260078 873.9255865 982.3840547 812.7889386 941.3557266 982.7340986 956.3049564 791.8697179 697.9346037 822.3466411 1.14614198 1.062721659 1.194610649 0.988377526 1.144718881 1.195036314 1.162897626 0.96293908 0.848710956 1 9.683602846 -8.362679263 4.724496647 0.920140015 1.125452094 0.622460294 0.068204421 0.145273827 5.22397561 0.039157994 0.017931777 4.34E-09 8.362679263 0.205312079 S(ph)PGAFDMSGVR ddPTM_K562_Paclitaxel_30min_R1 2 SPGAFDMSGVR 11 0 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 1 S(1)PGAFDMSGVR;S(1)PGAFDMSGVR 116.71 0.0039052 46530000 899.12 805.29 1293.72 825.8 620.92 917.28 759.18 975.18 727.67 983.1 TRUE FALSE 911.710454 893.2142855 967.1043855 772.8368841 705.4998163 1079.946729 903.2304418 892.3323721 797.5659548 782.7436804 1.164762459 1.141132542 1.235531388 0.987343499 0.901316528 1.379693961 1.153928757 1.140005847 1.018936307 1 9.612396145 -8.791418325 5.161431011 1.003707813 1.137265269 0.152093259 0.121543129 0.383471955 25.08781943 0.114839257 0.031975819 1.62E-09 8.791418325 0.133557456 S(ph)PGAPGPLTLK ddPTM_K562_Paclitaxel_30min_R1 3 SPGAPGPLTLK 11 0 H0Y2Y8;Q15942-2;Q15942;C9JJK5 H0Y2Y8 ZYX Zyxin 1 S(1)PGAPGPLTLK;S(1)PGAPGPLTLK;S(1)PGAPGPLTLK 112.64 0.0049227 142983000 7883 7244.5 14575.1 9194 7335.9 6629.5 6185 10084 4345.9 11621.6 TRUE FALSE 7993.386321 8035.479009 10895.43574 8604.337991 8335.173778 7805.148742 7358.571462 9227.301258 4763.343113 9253.111541 0.863859285 0.868408316 1.177488858 0.929885904 0.900796855 0.84351612 0.795253729 0.997210637 0.514782848 1 13.17572287 -7.01171491 2.20983953 0.826930871 0.968946054 0.14474861 0.149411057 0.601485108 5.891405044 0.05265248 0.057144086 9.73E-08 7.01171491 0.142015182 S(ph)PGASNFSTLPK ddPTM_K562_Paclitaxel_30min_R1 4 SPGASNFSTLPK 12 0 Q9Y4E8 Q9Y4E8 USP15 Ubiquitin carboxyl-terminal hydrolase 15 1 S(1)PGASNFSTLPK;S(1)PGASNFSTLPK;S(1)PGASNFSTLPK;S(1)PGASNFSTLPK 190.24 0.00032225 227388000 6213.2 4885.92 10130.8 6621.6 4598.36 4809.59 5057.3 6878.2 3513.14 8032.8 TRUE FALSE 6300.203969 5419.381269 7573.154244 6196.920213 5224.734483 5662.503257 6016.896274 6293.853978 3850.592794 6395.710951 0.985067027 0.847346184 1.184098891 0.968918117 0.816912228 0.88535947 0.940770513 0.984074175 0.602058602 1 12.64288902 -6.594572461 7.062906755 0.875676373 1.003723705 0.186125289 0.129320266 0.388133447 31.51072095 0.037658157 0.048760478 2.54E-07 6.594572461 0.128047332 S(ph)PGEPGGAAPEREVPAAAR ddPTM_K562_Paclitaxel_30min_R1 2 SPGEPGGAAPEREVPAAAR 19 1 Q96EB6;Q96EB6-2 Q96EB6 SIRT1 NAD-dependent protein deacetylase sirtuin-1;SirtT1 75 kDa fragment 1 S(1)PGEPGGAAPEREVPAAAR;S(1)PGEPGGAAPEREVPAAAR 75.608 0.0077442 97609000 256.5 229.22 518.64 440.13 371.47 422.9 408.09 451.53 416.03 388.72 TRUE FALSE 260.0917914 254.2470148 387.7029175 411.9020317 422.070503 497.8953772 485.5229471 413.1697081 455.9915404 309.4986506 0.840364864 0.821480204 1.252680478 1.330868587 1.363723241 1.608715825 1.56874011 1.33496449 1.473323194 1 8.273789309 -5.876884901 2.034580392 1.417165143 0.794000237 0.639333239 0.161131895 0.192906609 1.552849036 0.044786915 0.141185263 1.33E-06 5.876884901 -0.623164906 S(ph)PGHMVILDQTK ddPTM_K562_Paclitaxel_30min_R1 2 SPGHMVILDQTK 12 0 Q9NWH9-3;Q9NWH9;H7C3F4 Q9NWH9-3 SLTM SAFB-like transcription modulator 1 S(1)PGHMVILDQTK;S(1)PGHMVILDQTK 207.64 4.24E-10 60033000 14432.1 12968.6 24445 16832.8 13183.5 11233.7 12230 17202.7 7447.9 20615.6 TRUE FALSE 14634.19393 14384.5556 18273.55742 15753.21955 14979.3159 13225.83897 14550.57866 15741.22326 8163.304073 16414.1294 0.891560775 0.876352029 1.113282159 0.959735309 0.912586682 0.805759394 0.886466671 0.959004457 0.497333966 1 14.00265061 -7.04603616 3.191695062 0.830826552 0.964256121 0.163246503 0.139801105 0.480288783 9.816040513 0.047065224 0.049541524 8.99E-08 7.04603616 0.133429568 S(ph)PGIISQASAPR ddPTM_K562_Paclitaxel_30min_R1 1 SPGIISQASAPR 12 0 Q08495-3;Q08495-2;Q08495;Q08495-4;E5RFK4;E5RGQ7;E5RJC0;E5RGQ0 Q08495-3 DMTN Dematin 1 S(1)PGIISQASAPR 88.224 0.020655 12858000 232.22 427.84 246.8 286.42 190.11 262.81 245.4 133.53 221.94 535.7 TRUE FALSE 235.4717965 474.5530181 184.4922876 268.0503032 216.0062006 309.4156635 291.9633689 122.185793 243.2583287 426.5240459 0.552071562 1.112605544 0.432548386 0.628452969 0.506433817 0.725435451 0.684517958 0.28646871 0.57032735 1 8.736483268 -11.07553264 4.84193256 1.000012543 0.613913179 0.243145658 0.205843806 2.89E-05 5.51E-06 0.200883682 0.048719823 8.40E-12 11.07553264 -0.386099364 S(ph)PGKAEAESDALPDDTVIESEALPSDIAAEAR ddPTM_K562_Paclitaxel_30min_R1 4 SPGKAEAESDALPDDTVIESEALPSDIAAEAR 32 1 G3V529;Q9GZR7-2;Q9GZR7;A0A1W2PRR2;F5GYL3 G3V529 DDX24 ATP-dependent RNA helicase DDX24 1 S(0.951)PGKAEAES(0.049)DALPDDTVIESEALPSDIAAEAR;S(0.991)PGKAEAES(0.009)DALPDDTVIESEALPSDIAAEAR;S(0.597)PGKAEAES(0.402)DALPDDT(0.001)VIESEALPSDIAAEAR;S(0.802)PGKAEAES(0.196)DALPDDT(0.003)VIESEALPSDIAAEAR 133.45 8.03E-25 107640600 3928.83 3824.59 7763.5 4941.54 3703.88 3094.66 3292.48 4991.51 2765.94 5425.45 TRUE FALSE 3983.845741 4242.17167 5803.508407 4624.611742 4208.411163 3643.4545 3917.210892 4567.450069 3031.620896 4319.740312 0.922241953 0.982043216 1.343485485 1.070576333 0.974227814 0.843442947 0.906816292 1.057343669 0.701806284 1 12.07672887 -6.876248822 3.490577214 0.906128188 1.091982752 0.275625636 0.134967777 0.322611349 7.644976301 0.044467735 0.0516111 1.33E-07 6.876248822 0.185854564 S(ph)PGLCSDSLEK ddPTM_K562_Paclitaxel_30min_R1 1 SPGLCSDSLEK 11 0 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 1 S(1)PGLCSDSLEK 118.61 0.0033905 13305000 659.67 569.48 1129.7 830.85 688.39 536.18 594.33 856.7 787.26 928.33 TRUE FALSE 668.9074153 631.6577523 844.493263 777.5629997 782.1603725 631.2639947 707.1010149 783.9179876 862.8798406 739.1358364 0.904985772 0.854589537 1.142541359 1.051989312 1.058209241 0.85405681 0.956659088 1.060587174 1.167417135 1 9.529695713 -5.738652953 24.99532462 1.03056723 0.879787526 0.350590681 0.084978182 288.9781569 316986.6723 0.023253759 0.06143016 1.83E-06 5.738652953 -0.150779704 S(ph)PGLLDTTPIR ddPTM_K562_Paclitaxel_30min_R1 1 SPGLLDTTPIR 11 0 Q8IY92-2;Q8IY92 Q8IY92-2 SLX4 Structure-specific endonuclease subunit SLX4 1 S(1)PGLLDTTPIR 94.402 0.014001 0 652.58 665.32 1094.8 683.12 507.55 550.27 569.04 821.44 601.81 721.2 TRUE FALSE 661.7181334 737.9618876 818.4041997 639.3077407 576.6869029 647.8526583 677.0123694 751.6535447 659.6165395 574.2190441 1.152379288 1.285157459 1.4252474 1.113351686 1.004297765 1.128232623 1.179014135 1.309001421 1.148719371 1 9.165457368 -15 0.155048203 0.336693663 1.249368081 0.214909195 0.111966851 244.8950404 2.215912273 50.76629133 0.581656389 1.00E-15 15 0.912674418 S(ph)PGLVPPS(ph)PEFAPR ddPTM_K562_Paclitaxel_30min_R1 1 SPGLVPPSPEFAPR 14 0 H3BS42;Q9H5H4 H3BS42 ZNF768 Zinc finger protein 768 2 S(1)PGLVPPS(1)PEFAPR 106.35 0.024392 11078000 697.99 710.04 1113.9 755.34 941.34 464.58 734.4 944.63 527.87 998.71 TRUE FALSE 707.7640135 787.5645684 832.6821685 706.8958732 1069.566445 546.96674 873.7485662 864.3777853 578.5742721 795.1723538 0.890076233 0.990432533 1.04717193 0.88898447 1.345074989 0.687859352 1.09881658 1.087031989 0.727608636 1 9.635123789 -11.14566589 8.806447463 1 0.983368882 0 0.181487565 1.65E-09 1.39E-10 0.164224939 0.039830397 7.15E-12 11.14566589 -0.016631118 S(ph)PGMLEPLGSSR ddPTM_K562_Paclitaxel_30min_R1 4 SPGMLEPLGSSR 12 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR;S(1)PGMLEPLGSSR 135.04 0.00040342 627950000 2377.54 2285.16 3010.87 2671.83 2202.87 2161.4 2196.96 2567.73 1922.66 2986.76 TRUE FALSE 2410.832895 2534.661497 2250.738631 2500.470782 2502.938189 2544.693942 2613.821691 2349.585309 2107.340084 2378.056673 1.013782776 1.065854118 0.946461309 1.051476532 1.052514104 1.070072876 1.099141884 0.988027466 0.886160581 1 11.21556738 -8.520479194 24.70746492 0.941084837 1.041837827 0.435703317 0.04608262 76.48969591 787649.6941 0.029932931 0.011747471 3.02E-09 8.520479194 0.10075299 S(ph)PGPAADGPIDLSK ddPTM_K562_Paclitaxel_30min_R1 1 SPGPAADGPIDLSK 14 0 Q8IX07 Q8IX07 ZFPM1 Zinc finger protein ZFPM1 1 S(1)PGPAADGPIDLSK 87.447 0.018806 15144000 760.06 905.43 1553.8 1151.5 815.98 765.34 966.05 1180.7 827.9 1477.8 TRUE FALSE 770.703185 1004.287909 1161.523973 1077.647944 927.1302907 901.0623031 1149.352944 1080.392165 907.4234942 1176.623549 0.655012545 0.853533749 0.987167029 0.915881673 0.787958299 0.765803391 0.976823 0.918213958 0.7712097 1 10.2004371 -15 0.018248977 2.058000387 5.79E-18 0.185360079 0.098805771 8283.968091 11.42671123 846.6672414 487.7039548 1.00E-15 15 -2.058000387 S(ph)PGPGPGPGAGAEPGATGGSSHFISSR ddPTM_K562_Paclitaxel_30min_R1 2 SPGPGPGPGAGAEPGATGGSSHFISSR 27 0 Q9ULI0-2;Q9ULI0;C9JG15 Q9ULI0-2 ATAD2B ATPase family AAA domain-containing protein 2B 1 S(1)PGPGPGPGAGAEPGATGGSSHFISSR;S(1)PGPGPGPGAGAEPGATGGSSHFISSR 187.23 3.13E-42 72087000 845.45 800.52 1150.96 629.66 896.83 846.74 752.41 774.38 489.63 980.2 TRUE FALSE 857.2889084 887.9234808 860.3859131 589.2764259 1018.993429 996.8974502 895.1758697 708.5915855 536.6611492 780.434702 1.098476152 1.137729369 1.102444459 0.755061794 1.305674167 1.277361767 1.147022124 0.907944744 0.687643883 1 9.608134118 -8.373145507 4.357753076 0.832086634 1.1168953 0.356031553 0.156347587 0.25725794 8.015824701 0.096118854 0.043278103 4.24E-09 8.373145507 0.284808665 S(ph)PGSNSKVPEIEVTVEGPNNNNPQTSAVR ddPTM_K562_Paclitaxel_30min_R1 3 SPGSNSKVPEIEVTVEGPNNNNPQTSAVR 29 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 S(0.656)PGS(0.17)NS(0.17)KVPEIEVT(0.003)VEGPNNNNPQTSAVR;S(0.322)PGS(0.322)NS(0.322)KVPEIEVT(0.033)VEGPNNNNPQTSAVR;S(0.62)PGS(0.19)NS(0.19)KVPEIEVTVEGPNNNNPQTSAVR 81.055 5.60E-06 561466000 2653.25 1619.62 3808.83 2238.31 1866.47 1797.7 1573.56 2391.64 2832.85 2664.47 TRUE FALSE 2690.403686 1796.455589 2847.243759 2094.754815 2120.714814 2116.496854 1872.134795 2188.455254 3104.9579 2121.449551 1.268191216 0.846805708 1.342121832 0.987416747 0.999653662 0.997665418 0.882479055 1.031584867 1.463602044 1 11.05083466 -10.2350229 0.002627311 8.38E-05 2.122458433 0 0.193819878 1354516.184 947.3376442 386833.3944 378441.48 5.82E-11 10.2350229 2.122374663 S(ph)PGSTPTTPT(ph)SSQAPQK ddPTM_K562_Paclitaxel_30min_R1 1 SPGSTPTTPTSSQAPQK 17 0 A0A494C1F2;P35658-2;P35658-4;P35658;P35658-3;P35658-5 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 2 S(0.491)PGS(0.494)T(0.015)PT(0.013)T(0.46)PT(0.463)S(0.054)S(0.01)QAPQK 189.56 1.28E-10 18507000 3380.3 2585.3 5615.1 3511.5 3010.4 2299 2436 3569.9 1980.2 4479.5 TRUE FALSE 3427.634629 2867.571797 4197.498558 3286.288107 3420.467446 2706.69537 2898.218283 3266.614712 2170.407058 3566.575441 0.961043636 0.804012657 1.176898857 0.921412756 0.959034094 0.758905963 0.81260535 0.91589671 0.608540908 1 11.80032377 -7.244807126 22.11006965 0.813521823 0.964973977 0.243982934 0.127681107 255.2488267 339313.5756 0.040641862 0.040475495 5.69E-08 7.244807126 0.151452154 S(ph)PGSTPTTPTSSQAPQK ddPTM_K562_Paclitaxel_30min_R1 3 SPGSTPTTPTSSQAPQK 17 0 A0A494C1F2;P35658-2;P35658-4;P35658;P35658-3;P35658-5 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 S(0.608)PGS(0.374)T(0.018)PTTPTSSQAPQK;S(0.986)PGS(0.014)TPTTPTSSQAPQK;S(0.986)PGS(0.007)T(0.007)PTTPTSSQAPQK 254.72 2.79E-78 82119100 5674.85 4647.28 10580.7 6564.88 4605.36 3887.68 4543.13 7031.1 3357.87 8414 TRUE FALSE 5754.315408 5154.685746 7909.471425 6143.83798 5232.688001 4577.105462 5405.165201 6433.764168 3680.408417 6699.222181 0.858952764 0.769445408 1.180655188 0.917097211 0.781088888 0.683229387 0.806834742 0.960374801 0.549378468 1 12.70977788 -6.724318334 6.010695017 0.789516311 0.939262067 0.154499212 0.153830515 0.335074565 31.90778841 0.045650857 0.057980161 1.89E-07 6.724318334 0.149745756 S(ph)PHQLLSPSSFSPSATPSQK ddPTM_K562_Paclitaxel_30min_R1 2 SPHQLLSPSSFSPSATPSQK 20 0 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 1 S(0.987)PHQLLS(0.013)PSSFSPSATPSQK;S(1)PHQLLSPSSFSPSATPSQK 148.89 1.09E-12 39882000 4570.7 4042.7 7735.7 5438 4404 4035.7 3595.4 5354.2 3375.6 7064.6 TRUE FALSE 4634.703902 4484.095658 5782.726861 5089.23102 5003.89936 4751.374731 4277.608381 4899.32729 3699.841463 5624.830642 0.823972169 0.797196563 1.028071284 0.904779422 0.889608893 0.844714274 0.760486609 0.871017743 0.657769398 1 12.45759394 -7.415620441 3.668073132 0.810595108 0.892147687 0.086056636 0.09892547 0.526678779 12.87121154 0.036178957 0.031012752 3.84E-08 7.415620441 0.081552579 S(ph)PISPELHSAPLTPVAR ddPTM_K562_Paclitaxel_30min_R1 2 SPISPELHSAPLTPVAR 17 0 A0A3B3IT55;A0A0G2JQF4;A0A0G2JNT7;Q7Z3B3-4;Q7Z3B3-2;Q7Z3B3;A0A1W2PRB5;A0A0J9YVS1;A0A0G2JQF5;A0A0G2JNB1 A0A3B3IT55 KANSL1 KAT8 regulatory NSL complex subunit 1 1 S(0.986)PIS(0.014)PELHSAPLTPVAR;S(0.973)PIS(0.027)PELHSAPLTPVAR 101.38 0.0015078 18800000 1416.8 1751.01 1875.83 1579.97 2059.3 1674.56 1862.79 2040.5 1193.8 2097.59 TRUE FALSE 1436.639571 1942.191193 1402.253517 1478.637796 2339.811524 1971.519704 2216.244678 1867.146789 1308.469824 1670.100007 0.860211703 1.162919098 0.839622484 0.885358835 1.401000847 1.180480029 1.327013154 1.11798502 0.783467947 1 10.70571878 -5.249019922 23.47769378 1.08890633 0.860211363 0.099644648 0.193281665 2109.505243 3987630.499 0.05072417 0.805559894 5.64E-06 5.249019922 -0.228694966 S(ph)PLAQMEEERR ddPTM_K562_Paclitaxel_30min_R1 2 SPLAQMEEERR 11 1 G3V1Q4;E7ES33;E7EPK1;Q16181-2;Q16181;A0A0U1RRM2 G3V1Q4 7-Sep Septin-7 1 S(1)PLAQMEEERR;S(1)PLAQMEEERR 104.9 0.0041033 43611000 930.68 946.51 1352.15 1540.8 1297.72 1137.04 985.09 1354.38 772.07 1592.9 TRUE FALSE 943.7123914 1049.853163 1010.783009 1441.979984 1474.491435 1338.678079 1172.005685 1239.316965 846.2307732 1268.266106 0.744096517 0.827786186 0.796980227 1.136969582 1.162604148 1.055518296 0.92410077 0.977174238 0.667234399 1 10.30864177 -6.219611016 18.76642487 0.995424673 0.793434407 0.330790279 0.129758237 35.29427189 15833.2137 0.037606197 0.065129322 6.03E-07 6.219611016 -0.201990266 S(ph)PLGGGGGSGASSQAACLK ddPTM_K562_Paclitaxel_30min_R1 2 SPLGGGGGSGASSQAACLK 19 0 J3QQY0;J3KSZ8;Q68DK7;Q68DK7-2 J3QQY0 MSL1 Male-specific lethal 1 homolog 1 S(1)PLGGGGGSGASSQAACLK;S(1)PLGGGGGSGASSQAACLK 197.41 9.54E-19 11383200 2183.53 1818.34 3921.2 2360.2 1710.12 1423.12 1639.06 2697.4 2017.79 3003 TRUE FALSE 2214.106157 2016.87251 2931.244563 2208.827336 1943.067297 1675.49035 1950.063079 2468.239033 2211.607745 2390.986952 0.926021849 0.843531375 1.225955901 0.923814049 0.812663279 0.700752611 0.815589176 1.032309704 0.92497692 1 11.22339054 -6.517147183 24.90649823 0.870181982 0.998319051 0.142271518 0.127334337 461.3731567 2004901.024 0.039429088 0.052614477 3.04E-07 6.517147183 0.12813707 S(ph)PLSGIPVR ddPTM_K562_Paclitaxel_30min_R1 1 SPLSGIPVR 9 0 Q5M775;Q5M775-4;J3KSG2 Q5M775 SPECC1 Cytospin-B 1 S(0.997)PLS(0.003)GIPVR 94.692 0.014023 6243900 767.74 654.1 693.84 746.25 482.92 696.72 658.53 685.04 567.07 963.02 TRUE FALSE 778.4907287 725.51685 518.6715107 698.3888651 548.7018799 820.2735096 783.4826297 626.8415761 621.5396072 766.7559954 1.015304391 0.946216077 0.67644924 0.910835871 0.715614724 1.069797321 1.021814807 0.817524193 0.810609387 1 9.582623732 -7.262849659 24.99740683 0.937410999 0.851486789 0.122104743 0.121429219 331.1383885 5869412.501 0.043736054 0.040655974 5.46E-08 7.262849659 -0.08592421 S(ph)PLTGYVR ddPTM_K562_Paclitaxel_30min_R1 1 SPLTGYVR 8 0 H0YNS8;H0YKM5;Q9NP66 H0YNS8 HMG20A High mobility group protein 20A 1 S(0.948)PLT(0.052)GYVR 83.499 0.02652 23417000 277.39 254.14 286.65 273.24 286.9 241.97 318.79 324.36 244.69 307.73 TRUE FALSE 281.2743158 281.8878646 214.2816623 255.7156094 325.9806373 284.8799821 379.2787383 296.8035934 268.1935678 245.0144571 1.147990691 1.150494824 0.874567423 1.043675595 1.330454705 1.162706827 1.547985139 1.211371757 1.094603033 1 7.936723068 -6.746839459 24.4114516 1.248171398 1.048231894 0.215281599 0.155267245 246.9866857 412965.6882 0.046259735 0.059434674 1.79E-07 6.746839459 -0.199939504 S(ph)PMDSLLHPR ddPTM_K562_Paclitaxel_30min_R1 2 SPMDSLLHPR 10 0 E9PAK5;O75064 E9PAK5 DENND4B DENN domain-containing protein 4B 1 S(1)PMDSLLHPR;S(0.999)PMDS(0.001)LLHPR 138.2 0.00079478 12202000 1642.85 1740.16 2382.75 1718.51 1529.13 1669.7 1649.57 2257.53 1402.44 2708.05 TRUE FALSE 1665.854969 1930.156554 1781.195293 1608.29246 1737.423394 1965.797851 1962.567296 2065.738735 1537.150628 2156.147924 0.772606995 0.895187446 0.826100693 0.745910075 0.805799721 0.911717526 0.910219227 0.958069116 0.7129152 1 11.07424044 -7.257471988 24.44451422 0.896690723 0.811334052 0.244542913 0.078538232 399.2874895 2460158.69 0.025855028 0.024918812 5.53E-08 7.257471988 -0.085356672 S(ph)PNREWEVLQPAPHQVITNLPEGVR ddPTM_K562_Paclitaxel_30min_R1 1 SPNREWEVLQPAPHQVITNLPEGVR 25 1 O75376-2;O75376;A0A088AWL3 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 S(1)PNREWEVLQPAPHQVITNLPEGVR 81.847 8.34E-05 0 134.1 245.55 308.33 342.94 0 173.9 208.33 280.26 197.81 289.11 TRUE FALSE 135.9778137 272.3599794 230.4882781 320.9453633 0 204.7387233 247.8595299 256.4501637 216.8105343 230.1892233 0.590721893 1.183200393 1.00129917 1.394267545 0 0.889436614 1.076764265 1.114084143 0.941879603 1 7.846676483 -7.696880187 6.594319853 1.042287586 0.851101729 0.065343315 0.352003201 0.703665139 56.00780417 0.140542999 0.107645476 2.01E-08 7.696880187 -0.191185858 S(ph)PPEFQ ddPTM_K562_Paclitaxel_30min_R1 1 SPPEFQ 6 0 Q96GX2 Q96GX2 ATXN7L3B Putative ataxin-7-like protein 3B 1 S(1)PPEFQ 65.038 0.022678 17839000 1450.8 1468.9 1888.2 1315 1325 1214.4 1240.1 1443.7 1194.2 1601.4 TRUE FALSE 1471.115676 1629.27947 1411.500557 1230.661786 1505.487432 1429.756789 1475.402501 1321.048674 1308.908246 1275.033801 1.153785629 1.277832375 1.107029912 0.965199342 1.180743155 1.121348146 1.157147756 1.03608914 1.026567488 1 10.31631978 -2 0.117681403 0.956759938 1.711634462 0.334122243 0.074068489 124.0509854 1.00932641 0.585403136 15.31511997 0.01 2 0.754874524 S(ph)PPETAAPVEDMAR ddPTM_K562_Paclitaxel_30min_R1 2 SPPETAAPVEDMAR 14 0 Q9Y3L3;A0A2R8Y5V0;Q6ZT62-2;Q6ZT62;A0A3B3IU28 Q9Y3L3 SH3BP1 SH3 domain-binding protein 1 1 S(0.997)PPET(0.003)AAPVEDMAR;S(1)PPETAAPVEDMAR 154.13 0.0001157 40542000 137.42 298.95 148.47 416.94 73.273 99.727 431.28 246.49 254.03 317.71 TRUE FALSE 139.344304 331.590372 110.9869122 390.1993346 83.25402312 117.4121832 513.1131286 225.549136 278.4307165 252.9605276 0.550853943 1.310838395 0.438751901 1.542530521 0.329118633 0.464152191 2.028431603 0.891637672 1.100688393 1 7.982768472 S(ph)PPLATGEPVDNLSPEE ddPTM_K562_Paclitaxel_30min_R1 1 SPPLATGEPVDNLSPEE 17 0 G3V5Y2 G3V5Y2 RBM23 1 S(1)PPLATGEPVDNLSPEE 97.2 0.002998 17119000 4832.3 4988.7 4989.4 5174.7 4099.5 4463 4624 4883.8 6312.2 5046.8 TRUE FALSE 4899.967109 5533.383137 3729.764262 4842.817903 4657.921305 5254.450386 5501.379861 4468.890706 6918.515014 4018.25939 1.219425287 1.377059717 0.928203956 1.205202908 1.159188806 1.307643404 1.369095254 1.1121459 1.72176914 1 11.97235498 -7.268932518 19.69714897 1.313325339 1.176539349 0.084173291 0.203336071 79.90421296 210037.5021 0.067441539 0.061038522 5.38E-08 7.268932518 -0.13678599 S(ph)PPLPAVIR ddPTM_K562_Paclitaxel_30min_R1 1 SPPLPAVIR 9 0 Q9Y6X9-2;Q9Y6X9 Q9Y6X9-2 MORC2 MORC family CW-type zinc finger protein 2 1 S(1)PPLPAVIR 96.143 0.013136 15121000 274.09 308.64 332.21 225.91 291.97 269.49 240.15 345.13 204.2 331.22 TRUE FALSE 277.9281056 342.338359 248.3394768 211.4211437 331.7412571 317.2802677 285.7172088 315.8090523 223.8143224 263.7171822 1.053886984 1.298126865 0.941688648 0.801696507 1.25794328 1.203108061 1.083422803 1.197529299 0.848690709 1 8.042847761 -8.765065366 24.9934052 0.924345347 1.103273117 0.196953596 0.145629812 168.0059205 1157955.503 0.128082114 0.038129049 1.72E-09 8.765065366 0.17892777 S(ph)PPPMNLGMNNR ddPTM_K562_Paclitaxel_30min_R1 1 SPPPMNLGMNNR 12 0 Q06413-5;Q06413-6;A0A0D9SGI5;A0A0D9SFD0;Q06413-4;Q06413;Q06413-2;Q06413-3;A0A0R4J2G5;D6RJG6;D8L7E9;A0A0D9SGF3;A0A1B0GV32;A0A0D9SFV9;A0A0D9SG58 Q06413-5 MEF2C Myocyte-specific enhancer factor 2C 1 S(1)PPPMNLGMNNR 86.114 0.023577 62773000 59.518 0 113.66 0 128.98 52.301 109.24 51.957 61.557 120.67 TRUE FALSE 60.35143563 0 84.96512727 0 146.5492596 61.57584801 129.9677197 47.54292854 67.46982489 96.07738776 0.628154418 0 0.884340522 0 1.525325189 0.640898441 1.35273994 0.494839937 0.702244581 1 6.586125021 -6.747593181 24.99969573 0.931831241 0.387273362 0.349760395 0.383069393 275.9948615 498314.206 0.107720585 0.138335033 1.79E-07 6.747593181 -0.544557879 S(ph)PPRASYVAPLTAQPATYR ddPTM_K562_Paclitaxel_30min_R1 3 SPPRASYVAPLTAQPATYR 19 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 S(0.995)PPRAS(0.003)Y(0.001)VAPLTAQPATYR;S(0.995)PPRAS(0.004)Y(0.001)VAPLTAQPATYR;S(0.998)PPRAS(0.002)YVAPLTAQPATYR 116.44 0.0001063 528300000 1088.72 844.85 1562.59 1416.16 930.4 1215.8 1112.8 1257.7 1171.98 1368.14 TRUE FALSE 1103.965439 937.0935801 1168.094829 1325.333836 1057.136232 1431.405059 1323.947991 1150.850535 1284.553916 1089.312317 1.013451718 0.860261621 1.072323162 1.216670201 0.97046202 1.314044684 1.215397981 1.056492722 1.179233812 1 10.08920193 -5.947226267 5.711934813 1.142547668 0.939642195 0.357337584 0.105256856 0.188971396 13.35722246 0.026892542 0.056917788 1.13E-06 5.947226267 -0.202905473 S(ph)PPSSSEIFTPAHEENVR ddPTM_K562_Paclitaxel_30min_R1 2 SPPSSSEIFTPAHEENVR 18 0 I3L3A7;I3L2L5;I3L317;I3L4Q0;C9JLW8 I3L3A7 FAM195B Protein FAM195B 1 S(0.987)PPS(0.012)S(0.001)SEIFTPAHEENVR;S(0.893)PPS(0.041)S(0.064)S(0.003)EIFTPAHEENVR 122.5 5.51E-06 125595000 644.7 514.61 842.89 671.89 469.28 447.846 549.02 788.77 457.46 820.41 TRUE FALSE 653.7277891 570.7968601 630.0919948 628.7979827 533.203881 527.2652 653.1936789 721.7590652 501.401077 653.2099917 1.000792697 0.873833633 0.964608629 0.962627625 0.816282494 0.80719096 0.999975027 1.104941863 0.767595541 1 9.351403049 S(ph)PPSTGSTYGSSQK ddPTM_K562_Paclitaxel_30min_R1 1 SPPSTGSTYGSSQK 14 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 S(0.996)PPS(0.002)T(0.002)GSTYGSSQK 79.652 0.029071 0 690.08 590.14 1761.1 983.59 638.45 352.54 596.23 792.97 653.37 1030.6 TRUE FALSE 699.7432491 654.5734809 1316.488524 920.5069398 725.417699 415.0580191 709.36153 725.6022489 716.1291078 820.5631543 0.852759773 0.797712495 1.60437197 1.121799017 0.884048589 0.505820932 0.864481334 0.884273496 0.872728813 1 9.680470564 -6.839439396 4.903271912 0.809167771 1.109170073 0.225211242 0.234683971 0.307322495 13.29166557 0.077843008 0.089943144 1.45E-07 6.839439396 0.300002302 S(ph)PQLSDFGLER ddPTM_K562_Paclitaxel_30min_R1 4 SPQLSDFGLER 11 0 Q8IX90-3;Q8IX90 Q8IX90-3 SKA3 Spindle and kinetochore-associated protein 3 1 S(1)PQLSDFGLER;S(1)PQLSDFGLER;S(1)PQLSDFGLER;S(1)PQLSDFGLER 168 0.00032461 265453200 3299.89 3077.78 4620.02 3618.63 3340.56 3173.12 2989.39 3675.59 3025.16 4093.65 TRUE FALSE 3346.098641 3413.822429 3453.638811 3386.547268 3795.600828 3735.828279 3556.611147 3363.325687 3315.740135 3259.361883 1.026611576 1.047389812 1.059605817 1.03902156 1.164522678 1.146183951 1.091198607 1.031896981 1.017297328 1 11.67037383 -8.409168556 3.501127533 1.01191546 1.083750068 0.343125043 0.042267092 0.332509476 7.378293391 0.031113529 0.012987837 3.90E-09 8.409168556 0.071834608 S(ph)PQPPVEEEDEHFDDTVVCLDTYNCDLHFK ddPTM_K562_Paclitaxel_30min_R1 2 SPQPPVEEEDEHFDDTVVCLDTYNCDLHFK 30 0 A0A1W2PPS1;Q00839-2;Q00839;A0A1W2PP35;Q5RI18;A0A1W2PRI6 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 S(0.947)PQPPVEEEDEHFDDT(0.039)VVCLDT(0.007)Y(0.007)NCDLHFK;S(0.917)PQPPVEEEDEHFDDT(0.083)VVCLDTYNCDLHFK 49.038 0.0077314 88246000 1648.18 1314.81 3278.25 1777.17 1671.71 1708.96 1364.52 2369.16 1560.42 2684.81 TRUE FALSE 1671.259605 1458.365402 2450.615243 1663.190271 1899.425204 2012.020061 1623.430547 2167.88507 1710.305313 2137.644248 0.781823078 0.682230172 1.146409298 0.778048205 0.888560015 0.941232416 0.75944842 1.014146798 0.800088843 1 11.06180606 -2 0.035974133 1.311484358 0.2061583 0.097581569 0.129991411 2481.365507 6.83304806 61.17131282 176.5118591 0.01 2 -1.105326058 S(ph)PRPTGSDLLPGAPILSLR ddPTM_K562_Paclitaxel_30min_R1 2 SPRPTGSDLLPGAPILSLR 19 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 S(0.972)PRPT(0.026)GS(0.001)DLLPGAPILSLR;S(0.997)PRPT(0.002)GSDLLPGAPILSLR 123.64 2.55E-06 20696900 1365.72 1492.91 1740.96 1664.02 1212.9 1195.69 1578.45 2027.38 1183.61 2398.8 TRUE FALSE 1384.844294 1655.910962 1301.433116 1557.297205 1378.117515 1407.728833 1877.952647 1855.141414 1297.301029 1909.923243 0.725078507 0.867003932 0.681405978 0.815371618 0.721556492 0.737060423 0.983260795 0.971317262 0.679242495 1 10.89929894 -7.747934979 24.97770145 0.906064915 0.76035311 0.365265874 0.097167597 255.962105 473427.2773 0.036105812 0.027808714 1.79E-08 7.747934979 -0.145711805 S(ph)PRRPGAPSLS(ph)PAPR ddPTM_K562_Paclitaxel_30min_R1 1 SPRRPGAPSLSPAPR 15 2 Q5QP82;Q5QP82-2 Q5QP82 DCAF10 DDB1- and CUL4-associated factor 10 2 S(0.999)PRRPGAPS(0.001)LS(1)PAPR 63.727 0.023864 0 590.65 352.93 539.64 290.63 366.87 319.32 275.51 384.8 519.15 381.42 TRUE FALSE 598.9209223 391.4640909 403.4012078 271.9902926 416.8439052 375.9469185 327.7865842 352.1088382 569.0166771 303.6863946 1.972169096 1.289040595 1.328347977 0.895628838 1.372613039 1.237944555 1.079358806 1.159448841 1.873698286 1 8.246438466 -5.246359348 3.636287953 1.237943694 2.066633556 0.426404547 0.252168712 0.287457528 6.795067735 0.061943527 0.659132312 5.67E-06 5.246359348 0.828689862 S(ph)PRSPQLSDFGLER ddPTM_K562_Paclitaxel_30min_R1 1 SPRSPQLSDFGLER 14 1 Q8IX90-3;Q8IX90 Q8IX90-3 SKA3 Spindle and kinetochore-associated protein 3 1 S(0.997)PRS(0.003)PQLSDFGLER 137.62 7.62E-06 292550000 1185.7 1129.3 1319.5 1345.4 1022.2 1001.8 923.68 1207.2 1153.5 1053.9 TRUE FALSE 1202.303458 1252.600793 986.3759056 1259.112066 1161.440946 1179.455164 1098.943458 1104.640825 1264.298829 839.1146015 1.432823903 1.492764863 1.175496057 1.500524557 1.384126726 1.405594852 1.309646449 1.316436185 1.50670579 1 9.712724049 -11.77320919 2.831737987 0.911845875 1.386969054 0.587998133 0.098263248 54415317.19 43731596.87 33302196.15 0.025235622 1.69E-12 11.77320919 0.475123179 S(ph)PS(ph)PAPAPAPAAAAGPPTR ddPTM_K562_Paclitaxel_30min_R1 3 SPSPAPAPAPAAAAGPPTR 19 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 2 S(1)PS(1)PAPAPAPAAAAGPPTR;S(1)PS(1)PAPAPAPAAAAGPPTR;S(1)PS(1)PAPAPAPAAAAGPPTR 171.85 6.16E-13 71651000 3614 3933 5503.3 4934.1 3772.9 3599.66 3422.65 4021.5 2916.42 4834.1 TRUE FALSE 3664.60715 4362.418241 4113.923851 4617.64891 4286.832856 4238.009159 4072.07997 3679.848474 3196.555172 3848.907767 0.952116126 1.133417194 1.068854881 1.199729687 1.113779055 1.101093977 1.057983256 0.956076034 0.830509684 1 11.91023338 -8.250447863 2.673902239 0.91007769 1.099935293 0.531037136 0.07010741 0.20653798 2.894602845 0.04298743 0.019375508 5.62E-09 8.250447863 0.189857603 S(ph)PS(ph)PAPPPR ddPTM_K562_Paclitaxel_30min_R1 1 SPSPAPPPR 9 0 A9Z1X7;Q8IYB3-2;Q8IYB3;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 2 S(1)PS(1)PAPPPR 123.51 0.01199 13813000 1593.4 1892.5 2899.7 2492.1 1949.1 1677 1941.5 2767 1410.8 2524.3 TRUE FALSE 1615.712516 2099.12955 2167.634872 2332.26786 2214.600419 1974.392404 2309.88949 2531.926079 1546.313644 2009.846274 0.803898555 1.044422938 1.078507794 1.160421018 1.101875525 0.982359909 1.149286649 1.259761063 0.769369112 1 10.97286944 -5.257031013 3.389271273 1.076647485 0.767106605 0.271677105 0.12476471 0.3916533 7.527185586 0.030296759 0.316353425 5.53E-06 5.257031013 -0.30954088 S(ph)PS(ph)PYYSR ddPTM_K562_Paclitaxel_30min_R1 1 SPSPYYSR 8 0 P62995;H7C2L4;H7BXF3;P62995-3;Q13595;Q13595-4;Q13595-3 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 2 S(1)PS(0.999)PY(0.001)YSR 126.39 0.010891 121260000 2779 2825.3 4009.9 3411.2 3196.3 2820.7 3104.1 2976.9 2814.4 3928.9 TRUE FALSE 2817.914574 3133.775809 2997.551151 3192.4209 3631.690174 3320.91154 3693.086771 2723.993764 3084.735695 3128.188023 0.900813683 1.001786269 0.958238804 1.020533573 1.160956486 1.061608674 1.180583374 0.870789653 0.986109426 1 11.61111151 -6.346960453 4.310815922 1.047937102 0.958181034 0.176263578 0.085722747 0.42127461 14.14142957 0.026020688 0.039965477 4.50E-07 6.346960453 -0.089756068 S(ph)PSAEFSPAAPPGISSIHSPSLR ddPTM_K562_Paclitaxel_30min_R1 1 SPSAEFSPAAPPGISSIHSPSLR 23 0 G3V2D8;Q68DK2-5;Q68DK2-2;Q68DK2 G3V2D8 ZFYVE26 Zinc finger FYVE domain-containing protein 26 1 S(0.495)PS(0.495)AEFS(0.011)PAAPPGISSIHSPSLR 107.75 2.37E-05 39095000 383.1 439.78 572.12 559.51 338.7 428.53 531.53 692.3 477.07 563.07 TRUE FALSE 388.464582 487.7966676 427.6812301 523.6255329 384.8366742 504.5237786 632.3850427 633.4847938 522.8947051 448.3160249 0.866497204 1.088064313 0.953972658 1.167983083 0.858404904 1.125375295 1.410578716 1.413031787 1.166352921 1 8.808372259 -7.534676294 8.131807276 1.280539254 0.999792138 0.419454121 0.142182561 0.130643392 57.48120282 0.051237851 0.040562167 2.92E-08 7.534676294 -0.280747116 S(ph)PSAIPEQNHSLNDQAK ddPTM_K562_Paclitaxel_30min_R1 1 SPSAIPEQNHSLNDQAK 17 0 Q13129 Q13129 RLF Zinc finger protein Rlf 1 S(0.5)PS(0.5)AIPEQNHSLNDQAK 138.81 2.12E-09 32611000 1526.1 1432.3 3064 1841.7 1524.6 999.59 1571.1 1993.4 1085.2 2401.1 TRUE FALSE 1547.470108 1588.683358 2290.455305 1723.581605 1732.276332 1176.853252 1869.208023 1824.048228 1189.438309 1911.754502 0.809450223 0.831008038 1.198090708 0.901570575 0.90611861 0.615588063 0.9777448 0.954122627 0.622171052 1 10.90068156 -7.013751524 24.05211915 0.831247444 0.941071717 0.084214415 0.15884472 1015.935263 1776924.998 0.051777465 0.053981296 9.69E-08 7.013751524 0.109824273 S(ph)PSDSSTASTPVAEQIER ddPTM_K562_Paclitaxel_30min_R1 1 SPSDSSTASTPVAEQIER 18 0 Q16643;Q16643-2;Q16643-3;D6R9Q9 Q16643 DBN1 Drebrin 1 S(0.972)PS(0.025)DS(0.003)STASTPVAEQIER 91.307 0.0022132 18263000 397.01 523.34 817.6 606.37 362.62 523.6 519.71 696.15 471.58 705.46 TRUE FALSE 402.5693649 580.480031 611.1867681 567.4801422 412.0149832 616.4531083 618.3222594 637.0077123 516.8773661 561.6868648 0.716714935 1.03345844 1.088127222 1.01031407 0.733531455 1.097503159 1.100830905 1.134097577 0.920223346 1 9.133622255 S(ph)PSELFAQHIVTIVHHVK ddPTM_K562_Paclitaxel_30min_R1 2 SPSELFAQHIVTIVHHVK 18 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 S(0.81)PS(0.19)ELFAQHIVTIVHHVK;S(0.5)PS(0.5)ELFAQHIVTIVHHVK 118.44 0.00010506 17746100 3616.5 3610 5101.9 4116.5 3309.1 2592.7 3865.3 5581.5 2632.5 6873.2 TRUE FALSE 3667.142158 4004.152008 3813.862246 3852.486115 3759.855444 3052.478942 4598.720497 5107.316736 2885.363387 5472.438067 0.670111222 0.731694349 0.696921957 0.703979847 0.687053083 0.557791409 0.840342173 0.933279952 0.527253731 1 12.41796801 -7.793576687 24.99912828 0.819659069 0.680104696 0.265253361 0.122468077 291.1623474 226488.1834 0.048996659 0.0330365 1.61E-08 7.793576687 -0.139554374 S(ph)PSFNMQLISQV ddPTM_K562_Paclitaxel_30min_R1 1 SPSFNMQLISQV 12 0 Q8IXS8 Q8IXS8 FAM126B Protein FAM126B 1 S(0.5)PS(0.5)FNMQLISQV 135.81 0.00033735 2466900 907.03 890.55 903.98 1218.5 875.44 975.51 1113.3 1361.7 1447.6 1580.7 TRUE FALSE 919.7312184 987.7832606 675.7590687 1140.350864 994.6897493 1148.503002 1324.542863 1246.015086 1586.648448 1258.552472 0.73078496 0.784856637 0.536933567 0.906081303 0.790344281 0.912558695 1.052433563 0.990038249 1.260693124 1 10.29754965 -7.406726994 0.920746638 1.108046746 0.708659436 0.688001409 0.105574737 0.316491263 0.563907926 0.066338666 0.052884893 3.92E-08 7.406726994 -0.39938731 S(ph)PSGLRPRGY(ph)TISDSAPSRR ddPTM_K562_Paclitaxel_30min_R1 1 SPSGLRPRGYTISDSAPSRR 20 3 P49815;A0A2R8Y5F1;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;X5D2U8;A0A2R8YGU4;A0A2R8Y6C9;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;P49815-4;H3BQK4 P49815 TSC2 Tuberin 2 S(0.532)PS(0.434)GLRPRGY(0.731)T(0.295)IS(0.008)DSAPSRR 68.845 0.0081044 29927000 2442.8 2559.9 2597.2 2607.7 2222.8 2172.8 2571 3155.5 2412.4 3488.6 TRUE FALSE 2477.006737 2839.398539 1941.504738 2440.453794 2525.582992 2558.115572 3058.833828 2887.420579 2644.121799 2777.621405 0.891772627 1.02224102 0.698981054 0.878612826 0.909261063 0.920973451 1.101242172 1.039529928 0.951937436 1 11.43963426 -7.588854975 5.834845287 1.026149093 0.88124307 0.409175889 0.081303294 0.210022093 13.40505418 0.032239923 0.024885138 2.58E-08 7.588854975 -0.144906023 S(ph)PSPAVPLR ddPTM_K562_Paclitaxel_30min_R1 2 SPSPAVPLR 9 0 Q6P4R8-3;Q6P4R8;Q6P4R8-2;E9PQ59 Q6P4R8-3 NFRKB Nuclear factor related to kappa-B-binding protein 1 S(0.597)PS(0.403)PAVPLR;S(0.822)PS(0.178)PAVPLR 106.88 0.0078526 54333000 3012.2 2995.3 4464.9 4319.2 3200.1 2830.3 3505.7 3925.8 3100.1 3818.4 TRUE FALSE 3054.380093 3322.336983 3337.680774 4042.185844 3636.007798 3332.213966 4170.888274 3592.278786 3397.878457 3040.207984 1.004661559 1.092799243 1.097846197 1.329575432 1.195973373 1.096048028 1.371908861 1.181589814 1.117646712 1 11.56995431 -6.019908182 21.4562712 1.198121893 1.060378129 0.217846668 0.10395333 158.5944551 170930.579 0.027308226 0.04838899 9.55E-07 6.019908182 -0.137743764 S(ph)PSPEPT(ph)VEDVISQVAR ddPTM_K562_Paclitaxel_30min_R1 1 SPSPEPTVEDVISQVAR 17 0 P20393 P20393 NR1D1 Nuclear receptor subfamily 1 group D member 1 2 S(0.657)PS(0.345)PEPT(0.998)VEDVISQVAR 79.383 0.029068 9362000 1546.1 1400 1366.8 1467.8 1398.7 1327.1 1748.4 1673.1 844.21 1916.1 TRUE FALSE 1567.75017 1552.856734 1021.734436 1373.661878 1589.22662 1562.442552 2080.149773 1530.959712 925.3001425 1525.597768 1.027630089 1.017867728 0.669727275 0.900408945 1.041707489 1.024151047 1.363498175 1.003514651 0.60651645 1 10.57515892 -5.558254907 24.99980302 0.961648352 1.025193286 0.018516234 0.197513482 1014.724049 717086.5674 0.053833683 0.142431806 2.77E-06 5.558254907 0.063544934 S(ph)PSPGLFR ddPTM_K562_Paclitaxel_30min_R1 3 SPSPGLFR 8 0 E7ESG2;Q9HAW4-2;Q9HAW4-3;Q9HAW4 E7ESG2 CLSPN Claspin 1 S(0.812)PS(0.188)PGLFR;S(0.684)PS(0.316)PGLFR;S(0.689)PS(0.311)PGLFR 98.582 0.014765 481077000 9638.4 9336.5 11435.6 11077.1 8788.4 9091.3 9087.4 10704.1 9392.4 10247.6 TRUE FALSE 9773.367337 10355.89064 8548.541346 10366.66439 9985.528869 10703.51441 10811.68671 9794.719892 10294.58199 8159.133495 1.197843784 1.269239025 1.047726618 1.270559477 1.223846733 1.311844501 1.325102318 1.200460796 1.261724911 1 12.99420023 -4.9928713 16.83554066 1.222886404 1.164897539 0 0.10254486 32945047.13 903706682.1 0.024581014 41624482.51 1.02E-05 4.9928713 -0.057988864 S(ph)PSPGPNHTSNSSNASNATVVPQNSSAR ddPTM_K562_Paclitaxel_30min_R1 1 SPSPGPNHTSNSSNASNATVVPQNSSAR 28 0 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 S(0.5)PS(0.496)PGPNHT(0.005)SNSSNASNATVVPQNSSAR 156.5 5.54E-35 62279000 330.75 212.66 267.36 159.18 198.07 157.29 167.27 336.09 404.25 322.07 TRUE FALSE 335.3815205 235.878938 199.8616613 148.9709073 225.0504874 185.183173 199.0086093 307.5370567 443.0800187 256.4319572 1.30787724 0.919850008 0.779394517 0.580937372 0.877622625 0.722153257 0.776067895 1.199293021 1.727865838 1 8.002432255 -8.415172909 4.282708962 1.392205295 0.839088742 0.433371988 0.242301867 0.194285959 5.914936028 0.145098185 0.063912476 3.84E-09 8.415172909 -0.553116554 S(ph)PSPSFR ddPTM_K562_Paclitaxel_30min_R1 3 SPSPSFR 7 0 P49585;C9JEJ2 P49585 PCYT1A Choline-phosphate cytidylyltransferase A 1 S(0.806)PS(0.178)PS(0.016)FR;S(0.994)PS(0.006)PSFR;S(0.959)PS(0.035)PS(0.005)FR 116.25 0.0031792 238809000 4871.6 5030.4 6720.9 5696.2 4564.9 4495.7 4520.6 5480.7 5134.9 5880.7 TRUE FALSE 4939.81743 5579.636084 5024.125672 5330.871227 5186.716664 5292.949272 5378.360251 5015.080326 5628.130088 4682.210112 1.055018317 1.191667172 1.073024395 1.138537379 1.107749661 1.130438222 1.148679816 1.071092541 1.202024248 1 12.19297396 -11.21625018 5.277133999 0.999990933 1.123996601 0.387624235 0.046849527 4.46E-06 6.63E-07 0.040512736 0.009825064 6.08E-12 11.21625018 0.124005668 S(ph)PSPYYSR ddPTM_K562_Paclitaxel_30min_R1 2 SPSPYYSR 8 0 P62995;H7C2L4;H7BXF3;P62995-3;Q13595;Q13595-4;Q13595-3 P62995;Q13595 TRA2B;TRA2A Transformer-2 protein homolog beta;Transformer-2 protein homolog alpha 1 S(0.992)PS(0.007)PYYSR;S(0.998)PS(0.002)PYYSR 101.46 0.01384 26555000 629.14 771.04 1226.6 970.01 986.79 851.26 599.38 833.11 839.83 929.87 TRUE FALSE 637.9499011 855.2247547 916.9296596 907.7979002 1121.207504 1002.219009 713.109226 762.3321054 920.499424 740.3619836 0.861672959 1.15514407 1.238488307 1.226154125 1.51440448 1.353687832 0.963189956 1.029674838 1.243309954 1 9.532087007 -7.765404337 24.99738775 1.061516601 1.235583921 0.18618112 0.168991715 189.279732 1193308.167 0.074204892 0.052128687 1.72E-08 7.765404337 0.17406732 S(ph)PSSDLDTDAEGDDFELLDQSELSQLDPASSR ddPTM_K562_Paclitaxel_30min_R1 1 SPSSDLDTDAEGDDFELLDQSELSQLDPASSR 32 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 1 S(0.363)PS(0.363)S(0.273)DLDTDAEGDDFELLDQSELSQLDPASSR 222.9 1.70E-77 34212000 350.66 282.85 247.54 235.36 336.06 187.33 115.75 252.72 238.1 334.47 TRUE FALSE 355.5703219 313.7325195 185.0454655 220.265063 381.8370615 220.5503453 137.7129582 231.2498586 260.9705689 266.3048304 1.335200422 1.17809549 0.694863346 0.827116289 1.433834531 0.828187551 0.517125273 0.868365242 0.97996934 1 8.056934787 -7.479934271 24.97624284 0.807860909 1.068471417 0.214151075 0.238582065 776.6320487 451684.9606 0.088610403 0.078141306 3.31E-08 7.479934271 0.260610508 S(ph)PSSDSWTCADTSTER ddPTM_K562_Paclitaxel_30min_R1 2 SPSSDSWTCADTSTER 16 0 F8VWH9;Q8N6T3-5;Q8N6T3;Q8N6T3-2;E5RHH7;Q8N6T3-4;H0YIQ0 F8VWH9 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 S(0.985)PS(0.015)SDSWTCADTSTER;S(0.995)PS(0.003)S(0.002)DSWTCADTSTER 246.66 2.07E-63 41758000 1232.17 1220.98 1590.19 1439.32 1013.37 1274.85 1298.84 1333.79 938.8 1645.33 TRUE FALSE 1249.424182 1354.290725 1188.726867 1347.008457 1151.40815 1500.926748 1545.28811 1220.476214 1028.975935 1310.010843 0.953751023 1.033801157 0.907417579 1.02824222 0.878930245 1.145736126 1.17959948 0.931653521 0.785471311 1 10.35536304 -8.513585003 24.92724832 0.881344554 1.017421924 0.211688926 0.100874739 630.5841472 1691348.598 0.063098707 0.026666186 3.06E-09 8.513585003 0.13607737 S(ph)PSSDSWTCADTSTERR ddPTM_K562_Paclitaxel_30min_R1 2 SPSSDSWTCADTSTERR 17 1 F8VWH9;Q8N6T3-5;Q8N6T3;Q8N6T3-2;E5RHH7;Q8N6T3-4;H0YIQ0 F8VWH9 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 S(0.25)PS(0.25)S(0.25)DS(0.25)WTCADTSTERR;S(0.477)PS(0.26)S(0.26)DS(0.004)WTCADTSTERR 73.758 0.015386 43480000 367.27 416.41 828.98 651.37 493.75 316.6 383.85 451.25 340.65 478.16 TRUE FALSE 372.4129131 461.875052 619.6937463 609.5940436 561.0071093 372.7445647 456.6835337 412.9134959 373.3709546 380.7107295 0.978204406 1.213191581 1.627728609 1.601200062 1.473578404 0.979075544 1.199555196 1.084585917 0.980720861 1 8.57255142 -7.260747743 24.99123692 1.063497099 1.395768308 0.437536543 0.186205111 68.17142445 2463306.424 0.069836051 0.065957525 5.49E-08 7.260747743 0.332271208 S(ph)PSSVTGNALWK ddPTM_K562_Paclitaxel_30min_R1 1 SPSSVTGNALWK 12 0 Q9NYB0;A0A590UJT3 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 1 S(0.999)PS(0.001)SVTGNALWK 127.79 0.0012008 13821000 583.61 970.34 1415.2 1000.3 808.41 961.84 947.75 978.09 614.57 1374.9 TRUE FALSE 591.7823406 1076.285003 1057.915257 936.1452352 918.5291285 1132.408819 1127.580615 894.9951495 673.6021945 1094.694625 0.540591254 0.983182869 0.966402166 0.855165645 0.839073388 1.034451794 1.030041245 0.817575175 0.615333426 1 10.09631276 -5.253822545 24.77273943 0.90519958 0.540591055 0.443391052 0.122344738 813.2482988 2644911.369 0.03170085 0.323286873 5.57E-06 5.253822545 -0.364608525 S(ph)PSTTYLHTPTPSEDAAIPSK ddPTM_K562_Paclitaxel_30min_R1 3 SPSTTYLHTPTPSEDAAIPSK 21 0 Q13111 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 S(0.863)PS(0.06)T(0.06)T(0.016)YLHTPTPSEDAAIPSK;S(0.209)PS(0.209)T(0.209)T(0.209)Y(0.165)LHT(0.001)PTPSEDAAIPSK;S(0.497)PS(0.13)T(0.13)T(0.13)Y(0.108)LHT(0.004)PT(0.001)PSEDAAIPSK 107.75 0.00010653 145990000 20072.8 19268.1 33824.5 22566.6 17182.2 15502.3 18239.3 26231.3 14658 31028.4 TRUE FALSE 20353.88113 21371.85632 25285.08664 21119.27928 19522.70654 18251.41524 21700.11196 24002.78733 16065.96639 24704.79505 0.823883829 0.8650894 1.023489027 0.854865593 0.790239567 0.738780273 0.878376522 0.971584151 0.650317736 1 14.59250347 -6.50782746 24.67067074 0.832806395 0.906735898 0.068754095 0.107459178 1499.797602 2458330.305 0.030152825 0.043042794 3.11E-07 6.50782746 0.073929503 S(ph)PSVAAMASPQLCR ddPTM_K562_Paclitaxel_30min_R1 1 SPSVAAMASPQLCR 14 0 P25325-2 P25325-2 1 S(0.989)PS(0.011)VAAMASPQLCR 91.469 0.01366 7097500 1325.8 1028.9 1617.2 1421 1162.5 1078.7 924.51 1194.7 1296.5 1417.8 TRUE FALSE 1344.36529 1141.238782 1208.917859 1329.86342 1320.852181 1269.992299 1099.930946 1093.202778 1421.034618 1128.851582 1.190914122 1.010973276 1.070927196 1.178067553 1.170084892 1.125030358 0.97438048 0.968420292 1.258832109 1 10.1406401 -7.698723781 24.99976377 1.047775655 1.121275018 0.134742828 0.091479161 140.0015933 55806.49526 0.035221832 0.0272827 2.00E-08 7.698723781 0.073499363 S(ph)PSWTAPPVIALQNGLSEDEALQR ddPTM_K562_Paclitaxel_30min_R1 1 SPSWTAPPVIALQNGLSEDEALQR 24 0 A0A087X0D9;E9PFU9;Q8WV99 A0A087X0D9 ZFAND2B AN1-type zinc finger protein 2B 1 S(0.487)PS(0.487)WT(0.025)APPVIALQNGLSEDEALQR 80.702 0.00020572 5746000 525.56 517.21 523 531.84 524.47 498.92 494.72 689.78 537.96 865.97 TRUE FALSE 532.9194615 573.6807369 390.9621816 497.7301628 595.9116934 587.3964568 588.5905374 631.1788835 589.6334617 689.4848387 0.772924119 0.83204257 0.567035212 0.721887031 0.86428542 0.851935277 0.853667121 0.915435479 0.855179735 1 9.429375018 -6.788697802 4.894588872 0.883793157 0.719189341 0.543006058 0.074888206 0.158641066 9.366967495 0.023802539 0.028275007 1.63E-07 6.788697802 -0.164603817 S(ph)PTFSEELPVLGDGQQLR ddPTM_K562_Paclitaxel_30min_R1 2 SPTFSEELPVLGDGQQLR 18 0 Q8N0Z3 Q8N0Z3 SPICE1 Spindle and centriole-associated protein 1 1 S(0.768)PT(0.228)FS(0.004)EELPVLGDGQQLR;S(0.986)PT(0.014)FSEELPVLGDGQQLR 127.29 2.94E-06 13804700 150.17 369.2 340.32 416.601 189.36 414.41 262.061 339.09 149.39 500.28 TRUE FALSE 152.2728433 409.5105046 254.402007 389.8820765 215.1540379 487.8997949 311.7857067 310.282188 163.739577 398.3226614 0.382285162 1.028087388 0.638683238 0.978809679 0.540150131 1.224885858 0.782746594 0.778971969 0.411072713 1 8.63779375 -5.241684885 23.6207182 0.815452183 0.382284301 0.239913874 0.233785152 3101.381499 3708243.225 0.055197449 1.903000936 5.73E-06 5.241684885 -0.433167882 S(ph)PTGPSNSFLANMGGTVAHK ddPTM_K562_Paclitaxel_30min_R1 1 SPTGPSNSFLANMGGTVAHK 20 0 H0Y6J6;Q5W012;Q96I25 H0Y6J6 RBM17 Splicing factor 45 1 S(0.826)PT(0.173)GPS(0.001)NSFLANMGGTVAHK 189.52 5.21E-17 81425000 3237.7 2719.2 5469.7 3419.6 2958.3 2628.1 2607.5 4088.2 2306.9 5271 TRUE FALSE 3283.037789 3016.091452 4088.806587 3200.282162 3361.270544 3094.156635 3102.259513 3740.881892 2528.488053 4196.767307 0.782277775 0.718670165 0.974275267 0.762558876 0.800918969 0.73727143 0.739202173 0.891372244 0.602484691 1 12.03506276 -11.56889755 3.236982868 1.00866512 0.783863644 0.327715679 0.09480294 70006309 79542538.04 5214719.162 0.022542668 2.70E-12 11.56889755 -0.224801476 S(ph)PTKSSLDYR ddPTM_K562_Paclitaxel_30min_R1 2 SPTKSSLDYR 10 1 Q96PK6 Q96PK6 RBM14 RNA-binding protein 14 1 S(0.996)PT(0.004)KSSLDYR;S(0.999)PT(0.001)KSSLDYR 139.19 0.0030423 133182000 6027 4530.8 9501 6238.9 4661.7 3824.5 4121.2 5827.4 8171.3 6793.9 TRUE FALSE 6111.396595 5025.488066 7102.355043 5838.764878 5296.702463 4502.721376 4903.176186 5332.325997 8956.189875 5409.299451 1.129794468 0.929046009 1.312989807 1.079393909 0.979184553 0.832403792 0.9064346 0.985770162 1.655702362 1 12.40122605 -11.17175865 3.804715252 0.999952334 1.072275934 0.008430714 0.228778205 29226194.62 28663863.46 10274.5707 0.055554406 6.73E-12 11.17175865 0.0723236 S(ph)PTMEQAVQTASAHLPAPAAVGR ddPTM_K562_Paclitaxel_30min_R1 2 SPTMEQAVQTASAHLPAPAAVGR 23 0 Q8ND56-2;Q8ND56;Q8ND56-3 Q8ND56-2 LSM14A Protein LSM14 homolog A 1 S(0.955)PT(0.045)MEQAVQTASAHLPAPAAVGR;S(0.894)PT(0.106)MEQAVQTASAHLPAPAAVGR 150.59 1.17E-18 68726000 1633.23 1316.19 2121.06 1918.71 1403.11 1528.06 1381.8 2126.71 1075.57 2090.71 TRUE FALSE 1656.100259 1459.896075 1585.57217 1795.652528 1594.237337 1799.039986 1643.989337 1946.032711 1178.883304 1664.622154 0.994880583 0.877013484 0.952511755 1.078714784 0.957717241 1.080749755 0.987605104 1.169053713 0.708198735 1 10.70097903 -11.29533087 3.718790167 1.000033622 0.985961803 0 0.119218909 170073096.7 3.058505891 48983.18104 0.027208357 5.07E-12 11.29533087 -0.014071819 S(ph)PTMEQAVQTASAHLPAPAAVGRR ddPTM_K562_Paclitaxel_30min_R1 1 SPTMEQAVQTASAHLPAPAAVGRR 24 1 Q8ND56-2;Q8ND56;Q8ND56-3 Q8ND56-2 LSM14A Protein LSM14 homolog A 1 S(0.5)PT(0.5)MEQAVQTASAHLPAPAAVGRR 113.73 9.31E-08 10565000 646.28 553.98 1102.7 783.89 616.47 515.21 531.49 932.57 704.06 848.28 TRUE FALSE 655.3299139 614.4654098 824.309747 733.614804 700.4436509 606.5752596 632.3374529 853.3423576 771.6881088 675.4000704 0.970284047 0.909779902 1.220476253 1.086192963 1.037079624 0.898097715 0.936241319 1.26346205 1.142564448 1 9.399598519 -8.252568136 24.98639491 1.15225994 1.012541614 0.220727476 0.107782781 911.7930578 2568127.562 0.054266273 0.030765453 5.59E-09 8.252568136 -0.139718326 S(ph)PTPALCDPPACSLPVASQPPQHLSEAGR ddPTM_K562_Paclitaxel_30min_R1 1 SPTPALCDPPACSLPVASQPPQHLSEAGR 29 0 Q9P2R6;A0A590UJ84;A0A590UK57;H7BYW9 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 S(0.769)PT(0.231)PALCDPPACSLPVASQPPQHLSEAGR 75.186 7.41E-05 9418300 512.46 384.75 434.87 700.5 400.21 235.82 471.77 604.86 116.78 435.61 TRUE FALSE 519.6360211 426.7583061 325.0816901 655.5730653 454.7253776 277.6393659 561.2858947 553.4733676 127.9972408 346.8324429 1.498233605 1.230445176 0.937287433 1.890172268 1.31108086 0.800499987 1.618320045 1.595794681 0.369046332 1 8.438095045 -8.75789339 24.99997751 0.684523122 1.347776943 0.391457135 0.336706904 87.24841449 615155.3741 0.247845163 0.08527034 1.75E-09 8.75789339 0.663253821 S(ph)PVIGSEVFLPNSNHVASGAGEAEER ddPTM_K562_Paclitaxel_30min_R1 2 SPVIGSEVFLPNSNHVASGAGEAEER 26 0 P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;P29590-12;P29590-13;P29590-11;H3BVD2 P29590-2 PML Protein PML 1 S(0.998)PVIGS(0.002)EVFLPNSNHVASGAGEAEER;S(1)PVIGSEVFLPNSNHVASGAGEAEER 129.96 7.27E-12 39312000 467.31 450.78 425.79 386.05 581.53 386.25 395.67 642.21 416.73 347.3 TRUE FALSE 473.8537818 499.9976848 318.2940484 361.2904809 660.7442314 454.7460143 470.746317 587.650252 456.7587785 276.5200694 1.713632515 1.808178647 1.151070333 1.306561516 2.389498285 1.64453168 1.702394759 2.125163115 1.651810588 1 8.111240382 S(ph)PVPAQIAITVPK ddPTM_K562_Paclitaxel_30min_R1 2 SPVPAQIAITVPK 13 0 A0A0A0MSA7;A0A0U1RQK7;O43432;O43432-3 A0A0A0MSA7 EIF4G3 Eukaryotic translation initiation factor 4 gamma 3 1 S(1)PVPAQIAITVPK;S(1)PVPAQIAITVPK 147.7 0.00014776 35306000 3294.5 3568.7 7335.6 4730.7 3144.7 3002.2 2999 4357.6 2827.1 5748.9 TRUE FALSE 3340.633164 3958.342735 5483.637054 4427.294076 3573.06138 3534.598017 3568.044594 3987.394681 3098.655587 4577.271024 0.729830754 0.86478225 1.198014499 0.967234418 0.780609529 0.772206408 0.779513508 0.871129251 0.676965723 1 12.160272 -6.759491135 24.9906789 0.803206112 0.953027344 0.171711101 0.133841482 82.90748623 1063465.448 0.041343136 0.050715529 1.74E-07 6.759491135 0.149821232 S(ph)PVPSAFSDQSR ddPTM_K562_Paclitaxel_30min_R1 4 SPVPSAFSDQSR 12 0 Q9UQ35;Q9UQ35-2;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.999)PVPS(0.001)AFSDQSR;S(0.993)PVPS(0.007)AFSDQSR;S(1)PVPSAFSDQSR;S(1)PVPSAFSDQSR 157.33 0.0012474 210849000 1689.09 1466.92 2455.84 1943.81 1829.21 1634.86 1484.09 2149.66 948.47 2105.98 TRUE FALSE 1712.742471 1627.083286 1835.832819 1819.142727 2078.379371 1924.779466 1765.68833 1967.032965 1039.574781 1676.78012 1.021447267 0.970361747 1.094856026 1.08490237 1.23950621 1.147902127 1.053023178 1.173101316 0.619982769 1 10.7114778 -8.746746152 24.99999921 0.809991288 1.0981951 0.515778178 0.111676861 157.2670978 267587.164 0.074571971 0.027922627 1.79E-09 8.746746152 0.288203812 S(ph)PVREPIDNLTPEER ddPTM_K562_Paclitaxel_30min_R1 2 SPVREPIDNLTPEER 15 1 G3XAC6;Q14498-2;Q14498;Q5QP22;Q5QP23;H0Y4X3;Q14498-3 G3XAC6 RBM39 RNA-binding protein 39 1 S(1)PVREPIDNLTPEER;S(1)PVREPIDNLTPEER 92.096 0.0077936 28067000 1327.95 1403.76 2063.8 1658.3 1566.17 1414.82 1617.26 2090.4 1173.62 2064.96 TRUE FALSE 1346.545397 1557.027264 1542.768165 1551.94406 1779.508869 1665.718462 1924.126642 1912.807472 1286.351445 1644.120019 0.819006752 0.947027739 0.938354955 0.943935992 1.082347304 1.01313678 1.170307898 1.16342326 0.782395099 1 10.6830999 -5.828450357 0.867676613 1.047448959 0.816484125 0.251727589 0.106142631 1.538030063 1.563058181 0.04193137 0.290030117 1.48E-06 5.828450357 -0.230964834 S(ph)PVSTRPLPSASQK ddPTM_K562_Paclitaxel_30min_R1 3 SPVSTRPLPSASQK 14 1 Q8ND56-2;Q8ND56;Q8ND56-3 Q8ND56-2 LSM14A Protein LSM14 homolog A 1 S(1)PVSTRPLPSASQK;S(1)PVSTRPLPSASQK;S(0.787)PVS(0.106)T(0.106)RPLPSASQK 163.64 0.00031044 998640000 9181.4 8052 14955.7 10001 8717.9 7216.5 7249.2 11046.7 10113.6 12809.4 TRUE FALSE 9309.967927 8931.14459 11179.94857 9359.580623 9905.425575 8496.24495 8624.697857 10108.21388 11085.05647 10198.83725 0.912846014 0.875702237 1.09619835 0.917710558 0.97123087 0.833060156 0.845655014 0.991114343 1.086894143 1 13.31611706 -8.51741898 21.36825564 1.041966385 0.924567167 0.318540395 0.072517092 46.34242002 181406.9883 0.04783775 0.019451315 3.04E-09 8.51741898 -0.117399218 S(ph)QDDAMVDYFFQR ddPTM_K562_Paclitaxel_30min_R1 1 SQDDAMVDYFFQR 13 0 H0YEH2;Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;E9PR38;Q14671-4;E9PM68;E9PL65;E9PMX1 H0YEH2 PUM1 Pumilio homolog 1 1 S(1)QDDAMVDYFFQR 139.6 3.71E-05 3564500 528.5 718.69 843.47 674.22 577.08 441.52 522.15 716.9 334.25 807.18 TRUE FALSE 535.9006306 797.1590047 630.5255666 630.9785469 655.688066 519.8173728 621.2252367 655.9948703 366.356206 642.6762729 0.833857812 1.240374102 0.981093582 0.981798416 1.020246263 0.80883237 0.96662233 1.020723649 0.570047816 1 9.3279484 -7.239198198 22.16644169 0.880376549 1.020854336 0.17043056 0.151370801 341.8047117 340654.7895 0.048173401 0.048110457 5.77E-08 7.239198198 0.140477788 S(ph)QEDLNEPIKR ddPTM_K562_Paclitaxel_30min_R1 1 SQEDLNEPIKR 11 1 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 S(1)QEDLNEPIKR 77.726 0.024741 19170000 1808.7 1413.3 3329.8 2157.9 1554.3 891.41 1030.4 1349.6 912.22 1407.8 TRUE FALSE 1834.02738 1567.608873 2489.150808 2019.501952 1766.021975 1049.489047 1225.913021 1234.943056 999.8428069 1120.889587 1.636224835 1.398539956 2.220692239 1.801695703 1.575553912 0.936300113 1.093696502 1.101752635 0.892008293 1 10.13042846 -7.140776809 3.60895855 1.01588293 1.764769016 0.767403635 0.200339659 0.126142315 2.980803456 0.072598786 0.072826198 7.23E-08 7.140776809 0.748886086 S(ph)QGAGSSPRRPQGGSDAPSGHAAPSR ddPTM_K562_Paclitaxel_30min_R1 2 SQGAGSSPRRPQGGSDAPSGHAAPSR 26 2 M0R0Q5;M0R398;Q96IQ9-2 M0R0Q5 ZNF414 1 S(0.641)QGAGS(0.16)S(0.16)PRRPQGGS(0.037)DAPSGHAAPSR;S(0.443)QGAGS(0.273)S(0.273)PRRPQGGS(0.011)DAPSGHAAPSR 55.588 0.0052828 10596000 467.07 356.34 402.25 477.43 261.779 446.3 198.77 494.13 575.83 846.9 TRUE FALSE 473.610421 395.2464063 300.6970125 446.8097767 297.4377318 525.4450386 236.4855699 452.1505722 631.1410444 674.3013151 0.702372086 0.586156956 0.445938642 0.662626287 0.441105074 0.779243681 0.35071201 0.670546775 0.935992605 1 9.397249601 -8.725618314 3.427749541 0.990464615 0.566742188 0.622470035 0.123299383 0.139122133 3.147773491 0.100756423 0.029839252 1.88E-09 8.725618314 -0.423722427 S(ph)QS(ph)IEQESQEK ddPTM_K562_Paclitaxel_30min_R1 1 SQSIEQESQEK 11 0 Q5VTL8;A0A0A0MRN0 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 2 S(1)QS(1)IEQESQEK 113.25 0.028664 7624000 2838.6 2412.6 5098.2 2785.8 2203.7 2113 1871.9 3164.5 2341.9 4126.7 TRUE FALSE 2878.349158 2676.015827 3811.096356 2607.131257 2503.881249 2487.710882 2227.083253 2895.655973 2566.849959 3285.676275 0.876029443 0.814449021 1.15991231 0.79348391 0.762059631 0.757138158 0.677815788 0.881296796 0.781224243 1 11.68197463 -6.430364719 24.95106379 0.79316276 0.943252311 0.234221361 0.115893403 77.78114787 20973.55879 0.031796501 0.047161831 3.71E-07 6.430364719 0.150089551 S(ph)QSFSHQQPSR ddPTM_K562_Paclitaxel_30min_R1 1 SQSFSHQQPSR 11 0 B3KNS5;Q8WVR3-2;Q8WVR3-3;Q8WVR3 B3KNS5 C7orf43 Uncharacterized protein C7orf43 1 S(0.811)QS(0.184)FS(0.005)HQQPSR 92.65 0.011166 6543700 1565.6 1350.9 1675.5 1571.5 1167.2 1056.5 1357.1 1739.8 1420.5 1712 TRUE FALSE 1587.52323 1498.39583 1252.499303 1470.711024 1326.192401 1243.855441 1614.60264 1591.993131 1556.945372 1363.09346 1.164647382 1.099261257 0.918865316 1.078950979 0.972928445 0.912523959 1.184513526 1.167926615 1.142214688 1 10.41266877 -7.783342007 24.99665315 1.137657597 1.023251683 0.229220038 0.087546732 331.4000839 378210.8063 0.037306803 0.025175062 1.65E-08 7.783342007 -0.114405913 S(ph)QSPHYFR ddPTM_K562_Paclitaxel_30min_R1 1 SQSPHYFR 8 0 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 S(0.951)QS(0.049)PHYFR 90.149 0.01143 56155000 2058.9 1959.3 2820.6 2489.3 2038.7 2112.8 1820.8 2287.8 1984.6 2568.4 TRUE FALSE 2087.730952 2173.223 2108.504645 2329.64744 2316.405455 2487.475415 2166.287295 2093.43711 2175.229697 2044.95867 1.020915964 1.062722211 1.031074454 1.139214926 1.132739497 1.21639398 1.0593306 1.023706318 1.063703501 1 10.99785597 -10.82856997 9.114114198 0.999999939 1.085723011 0.150772182 0.059067572 0 0 0.062781813 0.015226826 1.48E-11 10.82856997 0.085723073 S(ph)QT(ph)LGSKS(ph)T(ph)T(ph)NEK ddPTM_K562_Paclitaxel_30min_R1 1 SQTLGSKSTTNEK 13 1 C9J9D2;B4DXS0;Q5VSY0-2;Q5VSY0 C9J9D2 GKAP1 G kinase-anchoring protein 1 5 S(0.856)QT(0.986)LGS(0.163)KS(0.998)T(0.998)T(0.998)NEK 71.451 0.015169 235550000 2776.9 2568.7 2639.7 2672.2 3102.9 2521.6 2880.4 3330.4 2676.2 2805.1 TRUE FALSE 2815.785167 2849.159353 1973.275088 2500.817052 3525.567513 2968.770355 3426.940863 3047.461732 2933.260968 2233.41908 1.260750923 1.275694015 0.883522087 1.119725838 1.578551712 1.329249124 1.534392221 1.364482716 1.313350008 1 11.12503827 -6.726721961 24.93122417 1.37941009 1.127020769 0.259679612 0.177218539 212.0732428 152292.8047 0.051187878 0.066080356 1.88E-07 6.726721961 -0.252389321 S(ph)QVNGEAGSYEMTNQHVK ddPTM_K562_Paclitaxel_30min_R1 1 SQVNGEAGSYEMTNQHVK 18 0 H0YMH7;Q05D32-2;Q05D32 H0YMH7 CTDSPL2 CTD small phosphatase-like protein 2 1 S(1)QVNGEAGSYEMTNQHVK 184.47 1.81E-12 14550000 1077 841.71 1716.3 985.59 809.83 755.59 648.91 1045.6 755.22 1262.9 TRUE FALSE 1092.081323 933.6107443 1282.998838 922.3786687 920.1425565 889.5832775 772.037285 956.7697536 827.7622554 1005.520287 1.086085818 0.928485239 1.275955199 0.917314828 0.915090992 0.884699483 0.767798815 0.951517106 0.823217857 1 9.973726474 -6.493476355 23.98681614 0.884699694 1.082777911 0.469384153 0.098621917 362.186954 295475.967 0.026603104 0.039370037 3.21E-07 6.493476355 0.198078217 S(ph)RAYMPPRSR ddPTM_K562_Paclitaxel_30min_R1 1 SRAYMPPRSR 10 2 S4R3V8;Q86X29-6;Q86X29-5;Q86X29-2;Q86X29-3;Q86X29-4;Q86X29 S4R3V8 LSR Lipolysis-stimulated lipoprotein receptor 1 S(0.893)RAY(0.107)MPPRSR 86.898 0.013897 30592000 134.68 0 41.422 65.015 195.03 0 0 59.6 0 168.18 TRUE FALSE 136.5659355 0 30.9645038 60.8452289 221.5963879 0 0 54.53660799 0 133.9048237 1.019873159 0 0.231242631 0.454391614 1.6548798 0 0 0.40727889 0 1 7.065064122 S(ph)RDATPPVSPINMEDQER ddPTM_K562_Paclitaxel_30min_R1 1 SRDATPPVSPINMEDQER 18 1 P17275 P17275 JUNB Transcription factor jun-B 1 S(0.5)RDAT(0.5)PPVSPINMEDQER 83.826 0.0047237 12630000 0 0 0 0 154.32 0 0 0 85.197 0 TRUE FALSE 0 0 0 0 175.3409967 0 0 0 93.38055252 0 0 S(ph)RDIFDCLEGAAR ddPTM_K562_Paclitaxel_30min_R1 1 SRDIFDCLEGAAR 13 1 A6NCC9;E9PME3;C9JHT9;C9JJV1;Q9Y5U2-2;Q9Y5U2;E9PL88;C9JDU0 A6NCC9 TSSC4 Protein TSSC4 1 S(1)RDIFDCLEGAAR 90.706 0.011205 6893900 1051.5 902.35 1150.4 942.23 791.79 759.38 870.97 998.4 1205.1 1277.7 TRUE FALSE 1066.224244 1000.871625 859.967292 881.7995851 899.6452031 894.0453808 1036.232011 913.5796882 1320.85524 1017.304039 1.048088087 0.983847096 0.845339505 0.866800437 0.884342506 0.878837935 1.018606013 0.89803997 1.298387885 1 9.990535202 -8.740173964 24.9805863 1.14919402 0.924982563 0.475909524 0.092810617 165.9916889 194992.4814 0.061437026 0.023172513 1.82E-09 8.740173964 -0.224211457 S(ph)RDS(ph)ESHS(ph)RVRER ddPTM_K562_Paclitaxel_30min_R1 1 SRDSESHSRVRER 13 3 Q15424-2;Q15424;Q15424-3 Q15424-2 SAFB Scaffold attachment factor B1 3 S(1)RDS(1)ES(0.428)HS(0.572)RVRER 66.059 0.028233 15323000 0 0 0 125.37 108.13 0 0 66.728 0 0 TRUE FALSE 0 0 0 117.3293293 122.8591367 0 0 61.0590399 0 0 0 S(ph)RDSFLK ddPTM_K562_Paclitaxel_30min_R1 1 SRDSFLK 7 1 M0R181;P46778 M0R181 RPL21 60S ribosomal protein L21 1 S(0.948)RDS(0.052)FLK 74.173 0.029352 8951400 2604 2453.9 5065.1 3484.1 2126.7 1985.4 1482 2370.6 2229.3 2329.4 TRUE FALSE 2640.464034 2721.825101 3786.352861 3260.64542 2416.392545 2337.482814 1763.201763 2169.202733 2443.434226 1854.667001 1.423686318 1.467554606 2.041527055 1.758075934 1.302871375 1.260324798 0.950683741 1.169591485 1.317451717 1 10.85694446 -6.922728262 3.298893535 1.145867203 1.683519005 0.639981799 0.188420983 0.169307074 3.708111202 0.066577632 0.075711403 1.19E-07 6.922728262 0.537651802 S(ph)RDTAGEVAGDT(ph)GGDT(ph)VGYTETSANVK ddPTM_K562_Paclitaxel_30min_R1 1 SRDTAGEVAGDTGGDTVGYTETSANVK 27 1 O43193 O43193 MLNR Motilin receptor 3 S(0.856)RDT(0.227)AGEVAGDT(0.914)GGDT(0.291)VGY(0.264)T(0.291)ET(0.079)S(0.079)ANVK 47.281 0.023711 0 0 142.09 0 0 148.66 112.72 0 171.08 0 118.36 TRUE FALSE 0 157.6038667 0 0 168.9100088 132.7093093 0 156.5456862 0 94.23816703 0 1.672399535 0 0 1.792373665 1.408233134 0 1.661170745 0 1 6.558239573 -6.734072317 24.99999691 0.982737926 0.477828847 0.120991474 0.730796552 545.5378926 498350.2684 0.212678042 0.274499889 1.84E-07 6.734072317 -0.504909078 S(ph)REDLSAQPVQTK ddPTM_K562_Paclitaxel_30min_R1 2 SREDLSAQPVQTK 13 1 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2 G3V1L9 TJP1 Tight junction protein ZO-1 1 S(1)REDLSAQPVQTK;S(0.814)REDLS(0.186)AQPVQTK 123.63 0.0034215 35444000 5605.8 4979.6 11681.4 7098.6 5512.6 3717.7 3761.9 5534.2 2738.2 5957.9 TRUE FALSE 5684.298495 5523.289568 8732.286096 6643.327568 6263.509449 4376.981896 4475.700887 5064.035167 3001.216345 4743.67671 1.198289606 1.164347806 1.840826564 1.400459596 1.320391298 0.922698186 0.943508835 1.067533788 0.632677252 1 12.21178998 -7.201217491 3.287671592 0.914540426 1.411488317 0.581495742 0.200728663 0.194061419 4.181772032 0.07384359 0.071760184 6.29E-08 7.201217491 0.496947891 S(ph)REDLSAQPVQTKFPAYER ddPTM_K562_Paclitaxel_30min_R1 1 SREDLSAQPVQTKFPAYER 19 2 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2 G3V1L9 TJP1 Tight junction protein ZO-1 1 S(0.95)REDLS(0.05)AQPVQTKFPAYER 66.137 0.012166 18048000 1989.3 1570.8 3607.5 1776 1576.3 1294.9 1299.3 1901.8 1796.5 1949.5 TRUE FALSE 2017.156338 1742.305256 2696.742008 1662.095309 1791.018747 1524.532334 1545.835392 1740.230219 1969.061852 1552.19083 1.299554345 1.122481349 1.737377877 1.070806036 1.153865048 0.982180995 0.995905505 1.121144505 1.26856944 1 10.60009022 S(ph)RERDHSRS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SRERDHSRSR 10 3 F8WJN3;Q16630-3;Q16630;Q16630-2 F8WJN3 CPSF6 Cleavage and polyadenylation specificity factor subunit 6 2 S(1)RERDHS(0.001)RS(0.999)R 91.307 0.018368 4333400 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 S(ph)RFSGGFGAR ddPTM_K562_Paclitaxel_30min_R1 2 SRFSGGFGAR 10 1 A0A2R8Y4A4;A0A2R8YFS5;A0A2R8YDT5;A0A2R8YFR4;A0A2R8YCW1;A0A2R8Y5G6;A0A0J9YVQ7 A0A2R8Y4A4 1 S(0.996)RFS(0.004)GGFGAR;S(0.926)RFS(0.074)GGFGAR 91.123 0.011421 31744500 2192.81 2027.4 2615.76 2599.07 1634.28 1993.64 1818.95 2347.08 1546.89 2204.07 TRUE FALSE 2223.516105 2248.758388 1955.379037 2432.377283 1856.896605 2347.184062 2164.086267 2147.680904 1695.475696 1754.879324 1.267047868 1.281431924 1.114252707 1.386065269 1.058133502 1.337518785 1.233182383 1.223833955 0.966149451 1 10.77715611 -8.749006189 8.749080255 0.982526574 1.237370532 0.555472708 0.091110296 0.094491432 52.72586208 0.062077237 0.02136163 1.78E-09 8.749006189 0.254843958 S(ph)RFTPELQPK ddPTM_K562_Paclitaxel_30min_R1 1 SRFTPELQPK 10 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 S(0.951)RFT(0.049)PELQPK 71.176 0.023646 0 4995 3702.4 8001 5092.6 3659.3 3197.7 2992.4 4315.6 4728.7 4994.3 TRUE FALSE 5064.945411 4106.640553 5981.048595 4765.98343 4157.758612 3764.767197 3560.192279 3948.962843 5182.912763 3976.458919 1.273732614 1.032738081 1.504114268 1.198549646 1.045593252 0.94676376 0.895317254 0.993085286 1.303399047 1 11.95726855 -6.721301354 4.030044158 1.017530473 1.260601443 0.358225039 0.146655334 0.241590375 8.321347731 0.045890959 0.058077544 1.90E-07 6.721301354 0.24307097 S(ph)RPEAVSHPLNTVTEDMYTNGSPAPGSPAQVK ddPTM_K562_Paclitaxel_30min_R1 1 SRPEAVSHPLNTVTEDMYTNGSPAPGSPAQVK 32 1 Q00013-3;Q00013;A6NFY0 Q00013-3 MPP1 55 kDa erythrocyte membrane protein 1 S(0.482)RPEAVS(0.482)HPLNT(0.033)VT(0.002)EDMYTNGSPAPGSPAQVK 56.231 0.0010298 19019000 1785.1 1472.2 3264.5 2161.9 1609.7 1244.4 1187.5 1845.9 1946.2 2559.8 TRUE FALSE 1810.096908 1632.939775 2440.3366 2023.24541 1828.968392 1465.076868 1412.821926 1689.079273 2133.141206 2038.111355 0.888124637 0.801202432 1.197351948 0.992706019 0.897383937 0.718840442 0.693201538 0.828747295 1.046626427 1 10.99301716 -6.972691897 5.67784647 0.833419946 0.971899769 0.114997811 0.139112728 0.333958368 31.66523085 0.046379125 0.051712774 1.06E-07 6.972691897 0.138479822 S(ph)RPTSEGSDIESTEPQKQCSK ddPTM_K562_Paclitaxel_30min_R1 1 SRPTSEGSDIESTEPQKQCSK 21 2 H0YA82;Q4G0J3;Q4G0J3-3;D6RFF0 H0YA82 LARP7 La-related protein 7 1 S(0.476)RPT(0.079)S(0.079)EGS(0.362)DIES(0.002)T(0.002)EPQKQCSK 63.376 0.0088006 96312000 3400.4 2024.6 6321 3255.1 2321.8 2060.4 1882.6 3124.5 3440 3923.2 TRUE FALSE 3448.016091 2245.652675 4725.185373 3046.332455 2638.068468 2425.783011 2239.813522 2859.054222 3770.42737 3123.649687 1.10384212 0.718919501 1.512712963 0.975247791 0.844546839 0.776586126 0.717050165 0.91529285 1.207058329 1 11.60901695 -6.515800993 24.90526745 0.891378457 1.101108648 0.142971508 0.217549829 589.1293466 2073037.502 0.064176491 0.086353808 3.05E-07 6.515800993 0.209730192 S(ph)RQPSGAGLCDISEGTVVPEDR ddPTM_K562_Paclitaxel_30min_R1 1 SRQPSGAGLCDISEGTVVPEDR 22 1 H0Y332;Q5T5C0-3;Q5T5C0-2;Q5T5C0 H0Y332 STXBP5 Syntaxin-binding protein 5 1 S(0.578)RQPS(0.422)GAGLCDISEGTVVPEDR 85.932 0.00058805 45194000 767.6 707.27 751.44 523.05 599.59 826.85 605.5 751.18 763.36 946.62 TRUE FALSE 778.3487682 784.4921304 561.7296783 489.5039141 681.2643091 973.480238 720.3904641 687.3625703 836.6841388 753.6983244 1.032705982 1.040856938 0.745297767 0.649469288 0.903895215 1.29160462 0.955807437 0.911986332 1.110104815 1 9.557843375 -7.020565337 24.70585514 1.048433522 0.859031811 0.276388074 0.14579223 965.8309312 1160284.815 0.051559768 0.052168151 9.54E-08 7.020565337 -0.189401711 S(ph)RQPSPLLLLPPPAGLTSDPGPSVR ddPTM_K562_Paclitaxel_30min_R1 1 SRQPSPLLLLPPPAGLTSDPGPSVR 25 1 I3L2J0 I3L2J0 CIC 1 S(0.752)RQPS(0.248)PLLLLPPPAGLTSDPGPSVR 79.177 0.00015527 50929000 1657.3 1537.3 2076.6 1619.9 1530.5 1515.7 1368.1 1967.2 1602.9 1593.9 TRUE FALSE 1680.507313 1705.147613 1552.336647 1516.006864 1738.980012 1784.488114 1627.689833 1800.074081 1756.865707 1269.062305 1.324211827 1.343627973 1.223215472 1.194588208 1.370287341 1.406146969 1.28259253 1.418428452 1.384380972 1 10.30954719 -11.19028109 5.0800413 0.999974898 1.325921358 0.657058458 0.070972042 2.20E-05 3.50E-06 0.074814255 0.018143726 6.45E-12 11.19028109 0.32594646 S(ph)RS(ph)IEDDEEGHLICQSGDVLR ddPTM_K562_Paclitaxel_30min_R1 1 SRSIEDDEEGHLICQSGDVLR 21 1 A0A087WX74;B7ZL31;Q9HAZ1 A0A087WX74 CLK4 Dual specificity protein kinase CLK4 2 S(1)RS(1)IEDDEEGHLICQSGDVLR 72.585 0.0051648 7006000 666.43 369.14 841.72 772.58 455.05 510.1 426.79 617.92 628.61 677.63 TRUE FALSE 675.7620761 409.4439536 629.2173757 723.0301767 517.0355141 600.5590728 507.7711745 565.4238391 688.9907992 539.528634 1.252504563 0.75889198 1.166235369 1.340114558 0.958309683 1.113118072 0.94113851 1.047995979 1.277023601 1 9.075555719 -12.51312982 2.08489759 0.000380213 1.085052967 0.025015442 0.167885935 4702469.123 627712.1548 23083461.03 0.043680837 3.07E-13 12.51312982 1.084672754 S(ph)RS(ph)LVDY(ph)ENANK ddPTM_K562_Paclitaxel_30min_R1 1 SRSLVDYENANK 12 1 A0A0A0MRI2;Q9UNH7-2;Q9UNH7 A0A0A0MRI2 SNX6 "Sorting nexin-6;Sorting nexin-6, N-terminally processed" 3 S(1)RS(1)LVDY(1)ENANK 67.519 0.024932 0 338.81 262.86 408.47 332.64 352.69 367.17 299.16 440.62 209.02 329.35 TRUE FALSE 343.5543853 291.5599437 305.3466966 311.3059592 400.7323491 432.2824442 355.9240483 403.1865807 229.0973049 262.2282892 1.310134716 1.111855417 1.1644308 1.187156276 1.528181228 1.648496604 1.357306068 1.53754037 0.873655949 1 8.034679522 -2.056024645 20.52893757 1.296978862 1.506354538 0 0.238746928 0 0 0.055608852 0 0.008789726 2.056024645 0.209375675 S(ph)RS(ph)PLGFYVHLK ddPTM_K562_Paclitaxel_30min_R1 1 SRSPLGFYVHLK 12 1 Q8IXT5;B9ZVT1 Q8IXT5 RBM12B RNA-binding protein 12B 2 S(1)RS(1)PLGFYVHLK 81.992 0.029945 26849000 3633.3 3076.4 5436.3 3330.7 2738.9 2460.2 2729.9 3418.3 3127 5734.4 TRUE FALSE 3684.17741 3412.291756 4063.83883 3117.08381 3111.98455 2896.481927 3247.884274 3127.894079 3427.362322 4565.726132 0.806920368 0.747371099 0.890075031 0.682713706 0.68159685 0.634396774 0.711362044 0.685081406 0.750671902 1 12.15662861 -9.048899667 21.3653079 1.000000001 0.728181889 0.575025072 0.069246727 1581.09389 690813.639 0.072230543 0.018649846 8.94E-10 9.048899667 -0.271818111 S(ph)RS(ph)PS(ph)SPELNNK ddPTM_K562_Paclitaxel_30min_R1 1 SRSPSSPELNNK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 S(1)RS(0.999)PS(0.901)S(0.099)PELNNK 99.834 0.0040719 0 4744.1 3762.4 7973.3 5653.2 3490 3528.4 3174.3 5132.9 4119.3 5875.6 TRUE FALSE 4810.532037 4173.191556 5960.341802 5290.629055 3965.397086 4154.112199 3776.606854 4696.828106 4514.977171 4678.149495 1.028298057 0.892060324 1.274081089 1.130923469 0.847642233 0.887981926 0.807286483 1.003992735 0.965120327 1 12.19172225 -6.758406052 24.99979494 0.911766609 1.081587886 0.358803585 0.106291735 92.22383573 760075.2903 0.033761021 0.041719202 1.74E-07 6.758406052 0.169821277 S(ph)RS(ph)PT(ph)PPSSAGLGSNSAPPIPDSR ddPTM_K562_Paclitaxel_30min_R1 2 SRSPTPPSSAGLGSNSAPPIPDSR 24 1 J3QK89;Q8IWX8 J3QK89 CHERP Calcium homeostasis endoplasmic reticulum protein 3 S(0.665)RS(0.665)PT(0.713)PPS(0.44)S(0.513)AGLGS(0.002)NS(0.002)APPIPDSR;S(0.97)RS(0.97)PT(0.97)PPS(0.045)S(0.043)AGLGSNSAPPIPDSR 75.184 0.00080833 18446900 1232.29 1478.08 1732.46 1906.72 1298.93 1451.44 1358.89 1851.32 1292.03 1892.98 TRUE FALSE 1249.545862 1639.461773 1295.079046 1784.431513 1475.866257 1708.832505 1616.732284 1694.03881 1416.135254 1507.189637 0.82905683 1.087760779 0.859267483 1.183946246 0.97921736 1.133787324 1.072680069 1.123971907 0.939586645 1 10.55764524 -4.358633668 0.97534537 1.057516772 1.28E-14 0.281908297 0.096178537 12.29456783 2.51931189 0.028850733 20.75716138 4.38E-05 4.358633668 -1.057516772 S(ph)RS(ph)S(ph)S(ph)S(ph)GDRKK ddPTM_K562_Paclitaxel_30min_R1 1 SRSSSSGDRKK 11 3 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 5 S(1)RS(1)S(1)S(1)S(1)GDRKK 54.157 0.029053 0 1416.2 1252.5 1755.5 1419.6 1071.6 1209.6 1053.5 1415.1 1149.9 1750.8 TRUE FALSE 1436.031169 1389.252186 1312.302313 1328.55321 1217.570062 1424.105576 1253.396125 1294.878422 1260.353033 1393.985999 1.030161831 0.996604117 0.941402793 0.953060655 0.873444972 1.021606801 0.899145419 0.928903463 0.904136077 1 10.44500036 -5.609920314 2.122072277 0.936062976 1.032471952 0.331840295 0.042528286 0.401589221 3.176718718 0.011080311 0.056310508 2.46E-06 5.609920314 0.096408976 S(ph)RSDIDVNAAASAK ddPTM_K562_Paclitaxel_30min_R1 1 SRSDIDVNAAASAK 14 1 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 S(0.5)RS(0.5)DIDVNAAASAK 81.723 0.019795 245580000 4173.6 4199.5 6799.5 4740.6 3716.1 3566.5 3310 5092 4323.3 5654.8 TRUE FALSE 4232.043277 4658.015612 5082.88213 4436.559134 4222.295734 4198.968699 3938.055221 4659.402817 4738.572282 4502.348656 0.939963472 1.034574612 1.128940142 0.985387733 0.937798482 0.9326174 0.874666873 1.034882718 1.052466755 1 12.13646207 -5.225509957 21.95004286 0.994946788 0.939962942 0.05994702 0.067943403 12527.64545 7652697.542 0.018844735 2.841132213 5.95E-06 5.225509957 -0.054983846 S(ph)RSFDYNYR ddPTM_K562_Paclitaxel_30min_R1 1 SRSFDYNYR 9 1 O75494-6;O75494-3;Q5JRI1;O75494-5;O75494-4;O75494-2;O75494 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 1 S(0.678)RS(0.322)FDYNYR 101.39 0.030603 18001000 1993.1 1542.3 2204.7 1994 1318.4 1571 1682.6 1629.1 1308 2322.5 TRUE FALSE 2021.009549 1710.69353 1648.096218 1866.113765 1497.988401 1849.594792 2001.864566 1490.697786 1433.639244 1849.173225 1.092926029 0.925112643 0.89126113 1.009161143 0.810085491 1.000227976 1.082572762 0.806142857 0.775286612 1 10.85266466 -8.289761843 24.98070904 0.843036037 0.964226554 0.209205146 0.097512415 1083.42794 955588.5971 0.05244932 0.025203826 5.13E-09 8.289761843 0.121190517 S(ph)RSPGRPPK ddPTM_K562_Paclitaxel_30min_R1 1 SRSPGRPPK 9 2 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 S(0.973)RS(0.027)PGRPPK 66.351 0.030143 24425000 5430 4647.2 10625 6727.4 5789.7 4537.4 3658.9 4934.9 4486.1 4758.6 TRUE FALSE 5506.036753 5154.597012 7942.587342 6295.934675 6578.35516 5342.044182 4353.157174 4515.649442 4917.009949 3788.794708 1.453242305 1.360484642 2.096336158 1.661724944 1.736265928 1.409958732 1.148955673 1.191843262 1.29777682 1 11.88752326 -7.515818533 3.110481973 1.17650561 1.667929547 0.595155689 0.19456256 0.195456672 3.888605555 0.081595893 0.065176984 3.05E-08 7.515818533 0.491423937 S(ph)RSPGSPVGEGTGSPPK ddPTM_K562_Paclitaxel_30min_R1 4 SRSPGSPVGEGTGSPPK 17 1 E7EV99;E7ENY0;P35611-5;P35611-2;P35611-6;P35611-4;P35611;P35611-3;H0Y9H2;A0A0A0MSR2 E7EV99 ADD1 Alpha-adducin 1 S(0.759)RS(0.222)PGS(0.019)PVGEGTGSPPK;S(0.978)RS(0.019)PGS(0.003)PVGEGTGSPPK;S(0.848)RS(0.13)PGS(0.022)PVGEGTGSPPK;S(0.865)RS(0.111)PGS(0.023)PVGEGTGSPPK 104.42 0.0010462 117595000 10200.7 8638.8 17622.1 12230.7 9898.9 8798.7 8885.2 13307 7984.9 17411.9 TRUE FALSE 10343.54127 9582.013399 13173.18291 11446.27764 11247.29777 10359.02591 10571.12032 12176.48729 8751.885322 13863.34522 0.74610717 0.691176137 0.950216755 0.825650481 0.811297532 0.747224118 0.762523052 0.878322446 0.631296789 1 13.7589878 -11.25816407 5.92161462 1.000008573 0.788172175 0.362013464 0.086282748 9.61E-06 1.20E-06 0.082184033 0.019931749 5.52E-12 11.25816407 -0.211836397 S(ph)RSPLHPMSEIPR ddPTM_K562_Paclitaxel_30min_R1 1 SRSPLHPMSEIPR 13 1 Q9NVW2-2;Q9NVW2 Q9NVW2-2 RLIM E3 ubiquitin-protein ligase RLIM 1 S(0.908)RS(0.092)PLHPMSEIPR 78.287 0.02546 109590000 1887 1473.3 1843.8 1596 1472.7 1501.3 1296 1434.1 1510.1 1753.8 TRUE FALSE 1913.423822 1634.159876 1378.309886 1493.639703 1673.306673 1767.534476 1541.909234 1312.264254 1655.151852 1396.374597 1.370279741 1.1702876 0.987063134 1.069655454 1.198322195 1.265802514 1.104223206 0.939765201 1.185320798 1 10.4474703 -5.324890964 3.539795409 1.100050964 1.385889537 0.420831263 0.09726493 0.254745842 5.441217983 0.025968376 0.171956462 4.73E-06 5.324890964 0.285838573 S(ph)RSPLHPMSEIPRR ddPTM_K562_Paclitaxel_30min_R1 1 SRSPLHPMSEIPRR 14 2 Q9NVW2-2;Q9NVW2 Q9NVW2-2 RLIM E3 ubiquitin-protein ligase RLIM 1 S(0.5)RS(0.5)PLHPMSEIPRR 104.59 0.0022669 52106000 550.76 532.59 671.05 727.39 764.71 606.16 543.36 547.92 520.69 645.01 TRUE FALSE 558.4723392 590.7399773 501.6351281 680.7384611 868.8764486 713.6539651 646.4597235 501.370776 570.704601 513.5566079 1.087460137 1.150291844 0.976786435 1.325537342 1.691880574 1.389630576 1.258789612 0.976271687 1.111278858 1 9.004379499 -8.234272753 10.19716261 1.032858313 1.2760635 0.260861983 0.184372883 0.909530347 338.0110315 0.100448236 0.057225287 5.83E-09 8.234272753 0.243205187 S(ph)RSPLLVTVVESDPRPQGQPR ddPTM_K562_Paclitaxel_30min_R1 2 SRSPLLVTVVESDPRPQGQPR 21 2 A0A2R8YH03;Q5VWN6;Q5VWN6-2 A0A2R8YH03 FAM208B Protein FAM208B 1 S(0.5)RS(0.5)PLLVTVVESDPRPQGQPR;S(0.5)RS(0.5)PLLVTVVESDPRPQGQPR 105.57 9.29E-05 290340000 2756.1 2539.5 3136.3 3130.1 2672.3 2271.7 2388.2 2926.4 2516.8 2586.9 TRUE FALSE 2794.693903 2816.771198 2344.502276 2929.349396 3036.312502 2674.554099 2841.348483 2677.784054 2758.549885 2059.68836 1.356852793 1.367571548 1.138280102 1.422229427 1.474161121 1.298523675 1.379504073 1.300091852 1.339304498 1 11.00821035 -10.98270186 5.065767457 0.999997601 1.341468208 0.595816028 0.084463545 2.33E-06 4.68E-07 0.08334375 0.020213687 1.04E-11 10.98270186 0.341470606 S(ph)RSQPCDLDAR ddPTM_K562_Paclitaxel_30min_R1 2 SRSQPCDLDAR 11 1 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 1 S(0.895)RS(0.105)QPCDLDAR;S(0.5)RS(0.5)QPCDLDAR 105.17 0.0046768 16706800 4052.7 4024.3 5549.4 4440.4 4312.4 3693.2 3508.3 4616.3 4209.7 5531.4 TRUE FALSE 4109.450304 4463.686683 4148.385336 4155.612618 4899.82189 4348.137165 4173.98161 4224.116501 4614.060494 4404.097644 0.933097001 1.013530363 0.941937639 0.943578675 1.112559776 0.987293543 0.947749561 0.959133253 1.047674431 1 12.10463074 -3.220885541 0.708523502 0.996584282 5.09E-09 0.103738871 0.051359295 132.1365983 4.400313014 0.020887363 187.9034138 0.000601332 3.220885541 -0.996584277 S(ph)RSSHSLPSEASSQPQVK ddPTM_K562_Paclitaxel_30min_R1 2 SRSSHSLPSEASSQPQVK 18 1 A0A0D9SGJ6;J3KQV8;O43426 A0A0D9SGJ6 SYNJ1 Synaptojanin-1 1 S(0.622)RS(0.351)S(0.026)HS(0.001)LPSEASSQPQVK;S(0.486)RS(0.486)S(0.024)HS(0.004)LPSEASSQPQVK 144.18 1.68E-10 24946000 6509.2 4905 9009 6578.1 5173.3 5228.5 4729.9 6299.5 4864 8222.2 TRUE FALSE 6600.348883 5440.544488 6734.566528 6156.210108 5877.991045 6155.701063 5627.373833 5764.318155 5331.208933 6546.511127 1.008223885 0.831060145 1.028726049 0.940380302 0.897881472 0.940302543 0.859598911 0.880517583 0.814358798 1 12.67651053 -7.31463861 1.407152671 0.881155845 0.946040409 0.112650315 0.06766561 0.824625763 3.285784294 0.030735222 0.026594911 4.85E-08 7.31463861 0.064884564 S(ph)RSVPSSLQASAR ddPTM_K562_Paclitaxel_30min_R1 1 SRSVPSSLQASAR 13 1 P83369 P83369 LSM11 U7 snRNA-associated Sm-like protein LSm11 1 S(0.874)RS(0.126)VPSSLQASAR 77.894 0.026051 16992000 174.93 257.64 330.73 297.72 307.85 269.77 164.12 273.47 200.65 303.53 TRUE FALSE 177.3795597 285.7700065 247.2331211 278.6255717 349.7843819 317.6099217 195.2609132 250.2370166 219.923329 241.6704194 0.733972987 1.182478216 1.023017719 1.152915497 1.447361174 1.314227544 0.807963646 1.035447438 0.910013437 1 7.916897087 -7.766027484 24.99999464 0.941310103 1.153076908 0.227247748 0.183594103 187.7411359 1022963.449 0.078897981 0.055198157 1.71E-08 7.766027484 0.211766804 S(ph)RSVSPCSNVES(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SRSVSPCSNVESR 13 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.992)RS(0.008)VS(0.087)PCS(0.19)NVES(0.723)R 137.91 0.00072381 51644000 4148.2 4011.4 5899.5 4637.9 4420.2 4007.4 3880.1 5103.6 4551.2 5121.1 TRUE FALSE 4206.287598 4449.378218 4410.098261 4340.445852 5022.306075 4718.056123 4616.32872 4670.017324 4988.363095 4077.417009 1.031605938 1.091224716 1.081591177 1.064508693 1.231737167 1.157118861 1.132169878 1.145337186 1.223412539 1 11.9934398 -6.71969902 24.99179912 1.155197706 1.069971835 0.292863009 0.061088114 171.7878717 102856.2524 0.016996396 0.021942056 1.91E-07 6.71969902 -0.085225871 S(ph)RSWEDSPER ddPTM_K562_Paclitaxel_30min_R1 1 SRSWEDSPER 10 1 Q9UDY2-7;Q9UDY2-4;A0A3B3IU51;A0A1B0GTW1;A0A3B3ITE1;A0A2R8YDH4;Q9UDY2-2;Q9UDY2-6;Q9UDY2-3;Q9UDY2;Q9UDY2-5;A0A3B3ISF1;A0A3B3ISZ5;A0A3B3IRI3;A0A3B3IRV6;B1AN86;A0A3B3IU26 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 S(0.911)RS(0.089)WEDSPER 82.831 0.022161 16256000 814.94 818.09 886.21 1049.1 884.22 650.95 807.77 1038.6 1138.7 766.2 TRUE FALSE 826.3516743 907.4118328 662.475325 981.8154216 1004.665734 766.3868427 961.0401407 950.3644473 1248.077223 610.0480194 1.354568244 1.48744329 1.085939637 1.609406785 1.646863365 1.256272979 1.575351628 1.557851869 2.045867183 1 9.252778997 -6.301192709 24.78503864 1.546299241 1.32712929 0.11638571 0.270522725 971.4222989 605651.01 0.073885089 0.109591306 5.00E-07 6.301192709 -0.219169951 S(ph)RSWPASPR ddPTM_K562_Paclitaxel_30min_R1 1 SRSWPASPR 9 1 Q86YD1 Q86YD1 PTOV1 Prostate tumor-overexpressed gene 1 protein 1 S(0.983)RS(0.017)WPASPR 84.198 0.019151 40442000 412.23 384.35 600.32 543.75 457.1 396.53 332.51 530.1 345.05 461.03 TRUE FALSE 418.0024918 426.3146328 448.7617913 508.8763087 519.3647588 466.8490279 395.6020367 485.0646962 378.1935942 367.0718329 1.13874848 1.161392933 1.222544884 1.386312604 1.414885895 1.271819263 1.077723762 1.321443523 1.030298596 1 8.519918604 -8.779051119 18.87540119 1.015139745 1.250642871 0.461296727 0.101231738 15.41806109 16513.84604 0.104203036 0.027540863 1.66E-09 8.779051119 0.235503126 S(ph)RTGSESSQTGTSTTSSR ddPTM_K562_Paclitaxel_30min_R1 1 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 S(0.573)RT(0.4)GS(0.025)ES(0.002)S(0.001)QTGTSTTSSR 65.808 0.02331 9378000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 S(ph)RTPPSAPSQSR ddPTM_K562_Paclitaxel_30min_R1 2 SRTPPSAPSQSR 12 1 Q9UQ35;I3L3Q8 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.904)RT(0.096)PPSAPSQSR;S(0.523)RT(0.475)PPSAPSQS(0.001)R 92.265 0.011272 223667000 3267.2 2839.8 4136.9 3681.8 2749.4 2832 2762.4 3412.8 3213.1 4064.3 TRUE FALSE 3312.95088 3149.858968 3092.48843 3445.665827 3123.914828 3334.215437 3286.550979 3122.861338 3521.732612 3235.993429 1.023781708 0.973382374 0.955653495 1.064793827 0.96536501 1.030352969 1.015623502 0.965039456 1.088300297 1 11.65999296 -6.232036204 24.99874473 1.015200273 0.98318352 0.131162943 0.03970618 1519.039301 1291494.326 0.010195987 0.017656334 5.86E-07 6.232036204 -0.032016754 S(ph)RTSFVEDTETLSVSGIPNAR ddPTM_K562_Paclitaxel_30min_R1 2 SRTSFVEDTETLSVSGIPNAR 21 1 A0A0A0MTQ1;Q96GE4-2;Q96GE4 A0A0A0MTQ1 CEP95 Centrosomal protein of 95 kDa 1 S(0.437)RT(0.437)S(0.126)FVEDTETLSVSGIPNAR;S(0.333)RT(0.333)S(0.333)FVEDTETLSVSGIPNAR 126.96 1.09E-07 26610000 867.23 875.36 1001.99 949.63 978.94 1150.92 791.12 928.13 1055.59 1406.87 TRUE FALSE 879.3738956 970.9347651 749.025232 888.7249822 1112.288202 1355.019502 941.2308901 849.2795633 1156.984136 1120.149122 0.785050739 0.866790632 0.668683497 0.793398812 0.992982256 1.209677779 0.840272846 0.758184376 1.032884027 1 10.12947509 -6.730808387 7.60345748 0.965527132 0.776113694 0.383038673 0.120358679 0.243083795 47.26409847 0.038594685 0.049093187 1.86E-07 6.730808387 -0.189413438 S(ph)S(ph)LPLQRILAMS(ph)KS(ph)RNPR ddPTM_K562_Paclitaxel_30min_R1 1 SSLPLQRILAMSKSRNPR 18 3 O75031-2;O75031 O75031-2 HSF2BP Heat shock factor 2-binding protein 4 S(1)S(1)LPLQRILAMS(1)KS(1)RNPR 61.649 0.027147 12526000 278.47 340.51 508.21 414.94 470.28 323.39 306.11 291.32 232.73 462.57 TRUE FALSE 282.3694392 377.6880333 379.9061 388.3276056 534.3400979 380.7386759 364.1927745 266.5705476 255.0847564 368.2979801 0.76668745 1.025495804 1.031518283 1.054384294 1.450836352 1.033778887 0.988853576 0.723790414 0.692604277 1 8.524729675 -8.090029077 3.552308077 0.782742909 1.072400131 0.295611019 0.173824683 0.293672031 6.910914579 0.092504494 0.051253892 8.13E-09 8.090029077 0.289657222 S(ph)S(ph)RS(ph)KT(ph)GSLQLICK ddPTM_K562_Paclitaxel_30min_R1 2 SSRSKTGSLQLICK 14 2 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 4 S(1)S(1)RS(0.999)KT(0.743)GS(0.258)LQLICK;S(1)S(1)RS(0.999)KT(0.622)GS(0.379)LQLICK 74.475 0.01822 29407000 1329.88 1299.48 1284.87 1585.29 1806.33 1505.45 1505.68 1717.72 1725.54 1678.57 TRUE FALSE 1348.502423 1441.361621 960.4886774 1483.616595 2052.382727 1772.42042 1791.37492 1571.788964 1891.285827 1336.476513 1.008998221 1.078478826 0.718672321 1.110095524 1.535666888 1.326188978 1.340371419 1.176069276 1.415128369 1 10.38421877 -6.526299453 24.77301271 1.312212177 0.943807882 0.515974604 0.158302066 66.47489551 481411.4887 0.044755303 0.058078201 2.98E-07 6.526299453 -0.368404295 S(ph)S(ph)S(ph)NQVIFLGY(ph)IT(ph)SAPGSR ddPTM_K562_Paclitaxel_30min_R1 1 SSSNQVIFLGYITSAPGSR 19 0 E7EQL2;Q9H720 E7EQL2 CWH43 PGAP2-interacting protein 5 S(1)S(1)S(1)NQVIFLGY(0.932)IT(0.465)S(0.42)APGS(0.183)R 54.985 0.01655 99087000 2643.7 2725.5 3017.9 3141.5 2683 2384.8 2761.9 3166.4 2057.9 3566.4 TRUE FALSE 2680.719957 3023.079307 2255.99382 2940.018251 3048.470024 2807.710796 3285.956107 2897.394556 2255.57049 2839.565722 0.944059838 1.064627342 0.79448551 1.035376018 1.073569102 0.988781761 1.157203752 1.02036538 0.794336427 1 11.47145459 -4.949368857 14.2658898 0.996021282 0.670010095 0.01585059 0.109637295 4933390.172 41629881.06 0.027456503 43083242.75 1.12E-05 4.949368857 -0.326011187 S(ph)S(ph)S(ph)VAQVKAMIET(ph)K ddPTM_K562_Paclitaxel_30min_R1 2 SSSVAQVKAMIETK 14 1 A0A0G2JH67;O15205 A0A0G2JH67 UBD Ubiquitin D 4 S(1)S(1)S(1)VAQVKAMIET(1)K;S(1)S(1)S(1)VAQVKAMIET(1)K 73.36 0.016436 37668000 5958 4895.1 11219.8 6660.4 4995.7 4259.5 4635.8 6329.6 5929 7910.3 TRUE FALSE 6041.430382 5429.563572 8387.222725 6233.231755 5676.198918 5014.862519 5515.41885 5791.860972 6498.506941 6298.176518 0.959234846 0.862085011 1.331690641 0.989688323 0.901244813 0.796240389 0.875716778 0.919609185 1.031807686 1 12.62071848 -6.528306234 16.16775216 0.911648346 1.053538116 0.175261942 0.126468254 3.110875717 9259.154556 0.03847984 0.050271347 2.96E-07 6.528306234 0.141889771 S(ph)SADFGLLAR ddPTM_K562_Paclitaxel_30min_R1 1 SSADFGLLAR 10 0 A0A1C7CYX0 A0A1C7CYX0 1 S(0.875)S(0.125)ADFGLLAR 146.71 0.00039236 5936700 1103.8 1259.2 1684.7 1651.8 1396.9 1422.2 1322.7 2048.6 1860.4 2023.4 TRUE FALSE 1119.256606 1396.683714 1259.376649 1545.860941 1587.18143 1674.407201 1573.67542 1874.558643 2039.099732 1611.029969 0.694745987 0.866950796 0.781721428 0.959548221 0.985196713 1.039339574 0.97681325 1.16357776 1.265711856 1 10.65376762 -6.494150405 0.557337545 1.138415371 0.690060554 0.728720128 0.08280167 0.689866651 0.388543283 0.059635458 0.172448569 3.21E-07 6.494150405 -0.448354817 S(ph)SAGGGGEPGEGAYSQPGYHVR ddPTM_K562_Paclitaxel_30min_R1 2 SSAGGGGEPGEGAYSQPGYHVR 22 0 E7ESJ3;Q9UPS8 E7ESJ3 ANKRD26 Ankyrin repeat domain-containing protein 26 1 S(0.5)S(0.5)AGGGGEPGEGAYSQPGYHVR;S(0.5)S(0.5)AGGGGEPGEGAYSQPGYHVR 203.75 1.37E-30 33741000 2685.7 2872.9 3789.7 3276.6 2628.9 2604.5 2729 3513.5 3163 3586.3 TRUE FALSE 2723.308086 3186.572938 2832.943365 3066.453542 2987.000688 3066.371506 3246.813504 3215.006244 3466.820283 2855.410091 0.953736241 1.115977333 0.992131874 1.073910032 1.046084658 1.073881302 1.137074325 1.125935029 1.214123426 1 11.47948224 -7.555547677 2.362412265 1.130544337 1.039802192 0.262414024 0.063974481 0.371235406 4.186167475 0.025887781 0.019704617 2.78E-08 7.555547677 -0.090742145 S(ph)SDAHSSWYNGR ddPTM_K562_Paclitaxel_30min_R1 1 SSDAHSSWYNGR 12 0 Q9Y388 Q9Y388 RBMX2 "RNA-binding motif protein, X-linked 2" 1 S(0.983)S(0.017)DAHSSWYNGR 125.03 0.0016323 12467000 321.16 260.03 485.24 422 265.13 385.26 269.89 422.22 382.66 378.34 TRUE FALSE 325.6572309 288.4209548 362.7351606 394.9348088 301.2451947 453.5804517 321.1002186 386.3497756 419.4162028 301.2341003 1.081076912 0.957464492 1.204163673 1.311056113 1.00003683 1.505740722 1.065949101 1.282556574 1.392326441 1 8.234741285 -5.835775978 6.361925045 1.231806331 1.020306798 0.201935585 0.158947339 0.268324556 17.76307884 0.039155281 0.083812379 1.46E-06 5.835775978 -0.211499533 S(ph)SDELDAWTDFR ddPTM_K562_Paclitaxel_30min_R1 2 SSDELDAWTDFR 12 0 O43524;O43524-2 O43524 FOXO3 Forkhead box protein O3 1 S(0.992)S(0.008)DELDAWTDFR;S(0.979)S(0.021)DELDAWTDFR 243.4 2.07E-42 7546400 1069.74 898.26 1223.12 1079.5 831 727.28 902.51 1013.06 1029.83 977.46 TRUE FALSE 1084.71966 996.3350645 914.3282286 1010.265702 944.1962689 856.2528965 1073.756561 926.9942297 1128.749773 778.2531155 1.393787752 1.280219821 1.17484686 1.298119701 1.213225171 1.100224181 1.379700948 1.191121772 1.450363321 1 9.604095637 -5.335443169 3.374480421 1.235507393 1.403105008 0.142770557 0.122912953 0.519283689 9.747574759 0.029173073 0.197504581 4.62E-06 5.335443169 0.167597615 S(ph)SDIVSSVR ddPTM_K562_Paclitaxel_30min_R1 4 SSDIVSSVR 9 0 Q14C86-4;Q14C86-2;Q14C86-6;F8W9S7;Q14C86-3;Q14C86-5;Q14C86;H0Y4E7;H0Y7I9;C9IZ08 Q14C86-4 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 S(0.95)S(0.05)DIVSSVR;S(0.966)S(0.034)DIVSSVR;S(0.985)S(0.015)DIVSSVR;S(0.98)S(0.02)DIVSSVR 164.65 2.63E-06 66430500 2573.36 2498.53 3593.78 3120.24 2347.06 2239.45 2598.93 2786.42 2588.9 3032.94 TRUE FALSE 2609.394979 2771.327955 2686.485792 2920.121772 2666.769308 2636.585014 3092.0634 2549.696229 2837.575413 2414.825163 1.080573045 1.147630892 1.112497017 1.209247699 1.104332251 1.091832674 1.280450215 1.055851276 1.175064537 1 11.23770302 -11.28392395 4.448772875 0.999927598 1.140420025 0.301084913 0.063854701 5.47E-05 8.80E-06 0.058307892 0.014132537 5.20E-12 11.28392395 0.140492427 S(ph)SDPWSNSHFPHEN ddPTM_K562_Paclitaxel_30min_R1 1 SSDPWSNSHFPHEN 14 0 Q92545 Q92545 TMEM131 Transmembrane protein 131 1 S(0.5)S(0.5)DPWSNSHFPHEN 109.67 0.0025068 5716000 1204.9 934.56 1324.2 1340.1 773.45 1012.8 825.55 1234.1 981.66 1372.5 TRUE FALSE 1221.772317 1036.598421 989.8893325 1254.151984 878.8069846 1192.40586 982.1938028 1129.255502 1075.952829 1092.783747 1.118036685 0.948585138 0.905841925 1.147667128 0.80419112 1.091163612 0.898799791 1.03337509 0.984598126 1 10.09379222 -5.253467173 24.08645188 0.978865764 1.1180368 0.164771092 0.093662522 1042.545733 3149723.559 0.021269202 0.222808025 5.58E-06 5.253467173 0.139171036 S(ph)SDTLAMDMR ddPTM_K562_Paclitaxel_30min_R1 2 SSDTLAMDMR 10 0 Q5JSZ5-5;Q5JSZ5 Q5JSZ5-5 PRRC2B Protein PRRC2B 1 S(0.958)S(0.042)DTLAMDMR;S(0.996)S(0.004)DTLAMDMR 177.04 0.00021259 14986500 2571.6 2729.8 2950 3203.3 2260.5 2874.1 2276 3152.5 1902.9 4099.2 TRUE FALSE 2607.610334 3027.848796 2205.236015 2997.854675 2568.418371 3383.781281 2707.859118 2884.675448 2085.682047 3263.78079 0.798953883 0.927712059 0.675669157 0.918522066 0.786945734 1.036767326 0.829669421 0.883844729 0.639038643 1 11.67232845 S(ph)SEKEER ddPTM_K562_Paclitaxel_30min_R1 1 SSEKEER 7 1 F8W8C9;P12018 F8W8C9 VPREB1 Immunoglobulin iota chain 1 S(0.5)S(0.5)EKEER 84.244 0.021501 4892200 0 0 0 128.75 0 0 0 0 0 115.8 TRUE FALSE 0 0 0 120.4925513 0 0 0 0 0 92.19989644 0 0 0 1.306862111 0 0 0 0 0 1 6.526693225 -11.54242704 3.037343491 1.034445329 0.153748483 0.301943853 0.389715257 185907362.6 211239875.8 52515810.97 0.102952711 2.87E-12 11.54242704 -0.880696847 S(ph)SGGREDLESSGLQR ddPTM_K562_Paclitaxel_30min_R1 2 SSGGREDLESSGLQR 15 1 J3KT51;Q9UK76;Q9UK76-2;J3KSH8;Q9UK76-3 J3KT51 HN1 "Hematological and neurological expressed 1 protein;Hematological and neurological expressed 1 protein, N-terminally processed" 1 S(0.5)S(0.5)GGREDLESSGLQR;S(0.8)S(0.2)GGREDLESSGLQR 155.37 0.00015217 34235000 1823.93 1805.83 2223.75 2212.78 1659.43 1775.95 1775.57 2189.11 1681.08 2252.58 TRUE FALSE 1849.470647 2002.996626 1662.33681 2070.862195 1885.47246 2090.889797 2112.475138 2003.131442 1842.555245 1793.50296 1.031205796 1.116806981 0.926865942 1.154646656 1.051279258 1.165813408 1.177848705 1.11688215 1.027349989 1 10.80856441 -6.301744227 24.99753021 1.108053494 1.034144033 0.176137902 0.07086521 824.8495596 511579.4916 0.019555064 0.02900509 4.99E-07 6.301744227 -0.073909461 S(ph)SGGSEHSTEGSVSLGDGQLNR ddPTM_K562_Paclitaxel_30min_R1 2 SSGGSEHSTEGSVSLGDGQLNR 22 0 X6RLN4;Q71RC2-2;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;Q96J85;Q71RC2-7 X6RLN4 LARP4 La-related protein 4 1 S(0.692)S(0.153)GGS(0.151)EHS(0.005)TEGSVSLGDGQLNR;S(0.43)S(0.43)GGS(0.136)EHS(0.001)TEGS(0.001)VS(0.001)LGDGQLNR 159.72 5.66E-18 23553000 1400.69 1289.38 1871.43 1275.45 1657.99 1075.51 1000.43 1342.94 1339.74 1713.32 TRUE FALSE 1420.303981 1430.158869 1398.964351 1193.648346 1883.836308 1266.236598 1190.25637 1228.848865 1468.428013 1364.144444 1.041168322 1.048392548 1.025525088 0.875016096 1.380965423 0.928227655 0.872529574 0.900820196 1.076446134 1 10.4137807 S(ph)SGPTSLFAVTVAPPGAR ddPTM_K562_Paclitaxel_30min_R1 2 SSGPTSLFAVTVAPPGAR 18 0 A0A1W2PPS1;Q00839-2;Q00839;A0A1W2PP35;A0A1X7SBS1;A0A1W2PP22 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 S(0.566)S(0.421)GPT(0.01)S(0.003)LFAVTVAPPGAR;S(0.986)S(0.014)GPTSLFAVTVAPPGAR 211.9 8.43E-25 16060500 1658.08 1206.15 1846.65 1930.83 1263.9 1259.21 1337.78 1571.48 1013.61 1795.19 TRUE FALSE 1681.298236 1337.841536 1380.440368 1806.995206 1436.064578 1482.513213 1591.616771 1437.972965 1110.971769 1429.329293 1.17628474 0.935992527 0.965795899 1.264225966 1.0047122 1.037209005 1.113541001 1.006047363 0.777267894 1 10.48112261 -8.554871764 9.289259085 0.88894049 1.065055195 0.321058037 0.104941001 0.381401639 102.3022059 0.068794331 0.0260746 2.79E-09 8.554871764 0.176114706 S(ph)SGPYGGGGQYFAKPR ddPTM_K562_Paclitaxel_30min_R1 2 SSGPYGGGGQYFAKPR 16 1 F8W6I7;P09651-3;P09651-2;P09651;H0YH80 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 S(0.993)S(0.007)GPYGGGGQYFAKPR;S(0.97)S(0.03)GPYGGGGQYFAKPR 175.7 2.02E-09 178715000 2523.27 1988.65 4294.2 3098.6 2476 2057.46 2042.43 2379.6 2099.57 3307.8 TRUE FALSE 2558.603565 2205.777532 3210.0761 2899.869665 2813.273119 2422.321643 2429.97043 2177.438127 2301.24308 2633.668544 0.97149794 0.837530424 1.218861085 1.101076167 1.068195588 0.919751898 0.922656131 0.826769994 0.873778549 1 11.36285807 -7.358318808 4.389630099 0.89517308 1.041435467 0.29855287 0.099656388 0.302609079 10.03880842 0.038631777 0.033893527 4.38E-08 7.358318808 0.146262387 S(ph)SGRSGSMDPSGAHPSVR ddPTM_K562_Paclitaxel_30min_R1 1 SSGRSGSMDPSGAHPSVR 18 1 Q07666-3;Q07666;Q07666-2 Q07666-3 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 1 S(0.496)S(0.496)GRS(0.008)GSMDPSGAHPSVR 105.06 0.0011857 0 1899.3 1678.4 1837.5 1883.9 1308.4 1434.9 1007.6 1398.3 1739.1 1742.1 TRUE FALSE 1925.89606 1861.653388 1373.600399 1763.075086 1486.626231 1689.359368 1198.78684 1279.505687 1906.148326 1387.059064 1.388474442 1.342158699 0.990296978 1.271088688 1.071782933 1.217943354 0.864265172 0.922459411 1.374237316 1 10.43781351 -2.781042643 0.502374322 1.059891836 6.01602312 0.295000557 0.157210576 57.63044817 1.36673062 0.085488942 277.5915667 0.001655607 2.781042643 4.956131284 S(ph)SIHNFMTHPEFR ddPTM_K562_Paclitaxel_30min_R1 2 SSIHNFMTHPEFR 13 0 H0YHH6;A0A0U1RQU3;E7ERY9;P20020-6;P20020;P20020-4;P20020-1 H0YHH6 ATP2B1 Calcium-transporting ATPase;Plasma membrane calcium-transporting ATPase 1 1 S(0.5)S(0.5)IHNFMTHPEFR;S(0.5)S(0.5)IHNFMTHPEFR 126.91 0.00057562 106971000 2305.8 2246.35 3057.3 2500.7 2401.4 2484.8 2359.5 2814.9 2278.7 3116.8 TRUE FALSE 2338.088314 2491.61409 2285.446803 2340.316295 2728.511336 2925.444392 2807.202808 2575.756675 2497.579317 2481.594449 0.942171802 1.004037582 0.920959024 0.943069604 1.09949929 1.17885676 1.131209335 1.037944244 1.00644137 1 11.27705165 -6.760621173 24.99892884 1.085493177 0.953979314 0.53839354 0.055386538 17.48796682 534306.3125 0.018040082 0.021942656 1.74E-07 6.760621173 -0.131513864 S(ph)SKSAEDLTDGSYDDVLNAEQLQK ddPTM_K562_Paclitaxel_30min_R1 1 SSKSAEDLTDGSYDDVLNAEQLQK 24 1 Q8N2F6-6;Q8N2F6-4;Q8N2F6-5;Q8N2F6-2 Q8N2F6-6 ARMC10 Armadillo repeat-containing protein 10 1 S(0.322)S(0.322)KS(0.322)AEDLT(0.031)DGS(0.002)Y(0.002)DDVLNAEQLQK 72.231 0.00059748 38091000 2168.6 1522.7 5089.9 2250 1617.4 1310.6 1059.9 2070.7 2093.8 2614.2 TRUE FALSE 2198.967091 1688.953535 3804.891794 2105.695071 1837.717263 1543.016508 1261.010492 1894.78111 2294.918845 2081.424605 1.056472132 0.811441131 1.828022877 1.011660507 0.882913202 0.74132712 0.605840101 0.910328967 1.10257121 1 11.02335559 -6.516718152 24.29450939 0.85822771 1.228244367 0.260874747 0.268971596 257.2225825 1014368.582 0.080617214 0.107924128 3.04E-07 6.516718152 0.370016657 S(ph)SLGSHQLPR ddPTM_K562_Paclitaxel_30min_R1 1 SSLGSHQLPR 10 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 S(0.491)S(0.491)LGS(0.019)HQLPR 94.191 0.010173 5614400 1105.5 1160.8 1318.1 1133.7 1030.1 998.29 830.41 1205.6 738.05 1379.2 TRUE FALSE 1120.980411 1287.54007 985.3293529 1060.989556 1170.41706 1175.322715 987.9759625 1103.176755 808.9430002 1098.118283 1.020819367 1.172496706 0.897288906 0.966188773 1.065838788 1.070306116 0.899699038 1.004606491 0.736662901 1 10.10081775 -7.769842485 24.90646073 0.910625951 1.03093769 0.2789832 0.096003296 250.2916218 741845.9007 0.039419602 0.027059738 1.70E-08 7.769842485 0.120311739 S(ph)SLGSLQT(ph)PEAVTTR ddPTM_K562_Paclitaxel_30min_R1 1 SSLGSLQTPEAVTTR 15 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 2 S(0.568)S(0.431)LGS(0.123)LQT(0.878)PEAVTTR 105.06 0.0060865 61380000 2064.5 1913.2 2706.1 2077.1 1731.6 1548.2 1814.2 2246.1 2605.2 3019 TRUE FALSE 2093.40937 2122.089646 2022.911586 1943.884103 1967.473236 1822.751532 2158.434979 2055.279785 2855.4411 2403.726143 0.870901777 0.882833368 0.841573235 0.808696161 0.81850973 0.758302495 0.897953781 0.855039078 1.187922804 1 11.23105682 -8.742842885 21.39554645 1.09396069 0.840309531 0.7599899 0.056694675 17.22354774 19816.90459 0.037599388 0.014109409 1.81E-09 8.742842885 -0.253651158 S(ph)SLGSLQTPEAVTTR ddPTM_K562_Paclitaxel_30min_R1 1 SSLGSLQTPEAVTTR 15 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 S(0.5)S(0.5)LGSLQTPEAVTTR 105.19 0.0029622 21108000 1082.2 822.79 1098.9 935.91 979.12 1171.2 937.46 1257.5 1082.4 1488.9 TRUE FALSE 1097.354139 912.6249947 821.469104 875.8849216 1112.492721 1378.895876 1115.338141 1150.667526 1186.369356 1185.461363 0.925676849 0.769847946 0.692953081 0.738855731 0.938447052 1.163172347 0.940847316 0.97064954 1.000765941 1 10.21123293 -6.896340657 4.717897747 1.012653438 0.775829926 0.663385201 0.078269549 0.13141739 4.933600393 0.025658083 0.029332374 1.27E-07 6.896340657 -0.236823512 S(ph)SLSSHSHQSQIYR ddPTM_K562_Paclitaxel_30min_R1 1 SSLSSHSHQSQIYR 14 0 F1T0I1;O15027-2;O15027-4;O15027-3;O15027;O15027-5;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 F1T0I1 SEC16A Protein transport protein Sec16A 1 S(0.827)S(0.156)LS(0.008)S(0.01)HSHQSQIYR 91.657 0.0098027 4616700 235.02 119.93 275.06 268.95 213.63 110.18 0 235.59 221.99 310.04 TRUE FALSE 238.3110051 133.024363 205.6177011 251.7007508 242.7300228 129.718876 0 215.575159 243.3131314 246.8536778 0.96539378 0.538879405 0.832953768 1.019635409 0.983295144 0.525488934 0 0.873291259 0.985657307 1 7.947512329 -7.265406335 24.80619763 0.626662738 0.856218949 0.080769955 0.298000654 747.0817397 4671639.314 0.109259682 0.099934804 5.43E-08 7.265406335 0.229556211 S(ph)SLVTSK ddPTM_K562_Paclitaxel_30min_R1 1 SSLVTSK 7 0 A6NMQ3;Q5T5H1;O43768-6;O43768-5;O43768-2;O43768;O43768-9;O43768-7;O43768-3;O43768-4;A0A1W2PRU0 A6NMQ3 ENSA Alpha-endosulfine 1 S(0.963)S(0.036)LVTS(0.001)K 94.309 0.015439 50880000 3034.4 3316.8 8016.7 5824 4715.3 5266.9 4606.9 7563.7 3429.9 8281.2 TRUE FALSE 3076.890962 3678.939441 5992.784936 5450.474707 5357.603691 6200.910764 5481.035225 6921.116474 3759.35722 6593.486894 0.466656112 0.557965686 0.908894646 0.826645263 0.812559997 0.940460012 0.831280218 1.049689881 0.570162234 1 12.68682591 -5.687563418 4.627029822 0.867337395 0.490705448 0.569563499 0.124165868 0.131230196 5.162673363 0.02970341 0.083028431 2.05E-06 5.687563418 -0.376631947 S(ph)SPAELSSSSQHLLR ddPTM_K562_Paclitaxel_30min_R1 4 SSPAELSSSSQHLLR 15 0 Q9UQC2;Q9UQC2-2;E9PJE2 Q9UQC2 GAB2 GRB2-associated-binding protein 2 1 S(0.5)S(0.5)PAELSSSSQHLLR;S(0.637)S(0.363)PAELSSSSQHLLR;S(0.892)S(0.108)PAELSSSSQHLLR;S(0.5)S(0.5)PAELSSSSQHLLR 178.67 1.02E-06 162585000 4496.33 4884.41 6230.08 5817.93 5548.51 4498.54 4613.31 6189.06 3359.69 6589.16 TRUE FALSE 4559.292492 5417.706402 4657.219251 5444.79401 6304.310999 5296.292906 5488.661489 5663.260722 3682.403236 5246.285575 0.869051527 1.032674704 0.88771745 1.037837901 1.201671337 1.00953195 1.046199527 1.07948007 0.701906746 1 12.35708063 -8.740466481 24.99974106 0.850953133 1.02360422 0.2725192 0.110727181 262.6722072 313108.0109 0.074114169 0.027948477 1.82E-09 8.740466481 0.172651087 S(ph)SPGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR ddPTM_K562_Paclitaxel_30min_R1 2 SSPGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR 36 1 P40222 P40222 TXLNA Alpha-taxilin 1 S(0.7)S(0.299)PGQPEAGPEGAQERPSQAAPAVEAEGPGSSQAPR;S(0.499)S(0.499)PGQPEAGPEGAQERPS(0.001)QAAPAVEAEGPGSSQAPR 60.477 0.0002311 247410000 682.82 426.4 874.48 693.6 577.82 353.81 556.8 951.34 265.44 777.75 TRUE FALSE 692.3815867 472.955794 653.7067086 649.1156004 656.5288666 416.5532358 662.4498933 870.5177289 290.936698 619.2441231 1.118107643 0.763763072 1.055652665 1.048238613 1.060210089 0.67268016 1.069771789 1.405774712 0.469825529 1 9.274364461 -8.779768687 24.99999396 0.734913284 1.008430537 0.211046773 0.222104356 452.6495161 617367.2604 0.206169319 0.053645039 1.66E-09 8.779768687 0.273517253 S(ph)SPGQTPEEGAQALAEFAALHGPALR ddPTM_K562_Paclitaxel_30min_R1 4 SSPGQTPEEGAQALAEFAALHGPALR 26 0 Q14166 Q14166 TTLL12 Tubulin--tyrosine ligase-like protein 12 1 S(0.499)S(0.499)PGQT(0.002)PEEGAQALAEFAALHGPALR;S(0.498)S(0.498)PGQT(0.004)PEEGAQALAEFAALHGPALR;S(0.41)S(0.41)PGQT(0.179)PEEGAQALAEFAALHGPALR;S(0.481)S(0.481)PGQT(0.039)PEEGAQALAEFAALHGPALR 192.16 4.32E-33 1307850000 7030.6 7015.5 8950.3 7257.8 6716 6428.4 6338.2 8092.3 5485 8867.7 TRUE FALSE 7129.050091 7781.476015 6690.686069 6792.317193 7630.832903 7568.386481 7540.840362 7404.808604 6011.858758 7060.457872 1.009714982 1.102120593 0.947627787 0.962022197 1.080784425 1.071939896 1.068038433 1.048771728 0.851482845 1 12.78554603 -8.739398056 24.99880937 0.925741387 1.036853137 0.366414525 0.058190596 217.2066696 246352.8732 0.039913016 0.01505931 1.82E-09 8.739398056 0.11111175 S(ph)SPHSTYYMGQSSSGGSIHSNLEQEK ddPTM_K562_Paclitaxel_30min_R1 2 SSPHSTYYMGQSSSGGSIHSNLEQEK 26 0 Q9ULH0-2;Q9ULH0-4;Q9ULH0;Q9ULH0-5 Q9ULH0-2 KIDINS220 Kinase D-interacting substrate of 220 kDa 1 S(0.805)S(0.191)PHS(0.002)T(0.002)YYMGQSSSGGSIHSNLEQEK;S(0.378)S(0.378)PHS(0.083)T(0.083)Y(0.067)Y(0.013)MGQSSSGGSIHSNLEQEK 141.72 4.66E-29 29954000 1908.94 1976.43 4087.8 2675.3 1736.6 1531.95 1766.94 2339.9 1347.06 3125.7 TRUE FALSE 1935.67105 2192.223311 3055.784333 2503.718232 1973.154321 1803.619823 2102.207641 2141.11089 1476.451132 2488.680624 0.777790059 0.880877719 1.227873236 1.006042402 0.792851562 0.724729323 0.844707682 0.86033976 0.593266616 1 11.28116538 -6.765176767 24.76928889 0.793873049 0.984750101 0.248730485 0.144117765 114.9091992 761553.2328 0.045059607 0.053079733 1.72E-07 6.765176767 0.190877051 S(ph)SPINPAQSGSPNHVDSAYFPGSSTSSSSDNDEGSGGATNHISGNK ddPTM_K562_Paclitaxel_30min_R1 1 SSPINPAQSGSPNHVDSAYFPGSSTSSSSDNDEGSGGATNHISGNK 46 0 Q9NZB2-4;Q9NZB2;A0A0C4DH52;Q9NZB2-2;Q9NZB2-5 Q9NZB2-4 FAM120A Constitutive coactivator of PPAR-gamma-like protein 1 1 S(0.431)S(0.431)PINPAQS(0.052)GS(0.052)PNHVDS(0.016)AY(0.014)FPGS(0.002)S(0.001)T(0.001)SSSSDNDEGSGGATNHISGNK 76.826 1.16E-14 10165000 608.54 720.23 1060.1 756.51 607.18 646.6 545.79 916.89 419.82 1055.6 TRUE FALSE 617.0614375 798.8671471 792.4646438 707.9908346 689.8881956 761.2654313 649.3508033 838.9944715 460.1455868 840.4681406 0.734187779 0.950502593 0.942884811 0.842376767 0.82083801 0.905763579 0.772606089 0.998246609 0.547487245 1 9.715049322 -7.527110301 1.055038765 0.828392153 0.873762454 0.00609611 0.133053289 3.039260035 6.945653953 0.079731774 0.056097593 2.97E-08 7.527110301 0.045370302 S(ph)SPLSWR ddPTM_K562_Paclitaxel_30min_R1 1 SSPLSWR 7 0 Q8NEY1-2;Q8NEY1-3;Q8NEY1;A0A0A0MRJ3;Q8NEY1-6;Q8NEY1-7;Q8NEY1-4 Q8NEY1-2 NAV1 Neuron navigator 1 1 S(0.499)S(0.499)PLS(0.002)WR 101.25 0.0097441 5954500 1849.1 1754.8 2739.9 2691.5 1899 2010.7 1960 2126 1280.6 2777.4 TRUE FALSE 1874.993105 1946.394998 2048.178358 2518.879237 2157.67595 2367.269413 2331.899768 1945.38303 1403.607352 2211.364355 0.84788972 0.880178336 0.92620574 1.139061155 0.975721592 1.07050175 1.05450726 0.879720714 0.634724598 1 11.11072104 -8.518457915 24.99765569 0.797315739 0.986003337 0.255744994 0.116932469 240.7426688 1361326.583 0.075701504 0.030158593 3.03E-09 8.518457915 0.188687599 S(ph)SPNPFITGLTR ddPTM_K562_Paclitaxel_30min_R1 1 SSPNPFITGLTR 12 0 A0A0D9SGJ6;J3KQV8;O43426 A0A0D9SGJ6 SYNJ1 Synaptojanin-1 1 S(0.5)S(0.5)PNPFITGLTR 87.831 0.021201 10888000 948.85 983.36 1284.3 1048.1 1009.7 1009 1274.7 1340.5 867.59 1386.6 TRUE FALSE 962.1368275 1090.72657 960.062581 980.8795571 1147.238234 1187.931983 1516.567671 1226.616158 950.925896 1104.010159 0.87149273 0.987967875 0.869613901 0.888469684 1.039155505 1.076015445 1.37368996 1.111055137 0.861337994 1 10.10853773 -6.937072991 3.044150205 1.107251261 0.907730304 0.312353164 0.124108216 0.307887528 5.803502179 0.043418084 0.049033194 1.16E-07 6.937072991 -0.199520957 S(ph)SPPAPPLPPGSGSPGTPQALPR ddPTM_K562_Paclitaxel_30min_R1 3 SSPPAPPLPPGSGSPGTPQALPR 23 0 Q9Y3L3;A0A2R8Y5V0 Q9Y3L3 SH3BP1 SH3 domain-binding protein 1 1 S(0.828)S(0.172)PPAPPLPPGSGSPGTPQALPR;S(0.496)S(0.496)PPAPPLPPGS(0.006)GS(0.002)PGTPQALPR;S(0.359)S(0.359)PPAPPLPPGS(0.158)GS(0.118)PGT(0.006)PQALPR 151.58 1.87E-18 46960000 1612.37 1448.16 2073.15 1901.07 1526.49 1493.27 1545.18 1740.54 1573.72 2115.61 TRUE FALSE 1634.948155 1606.275006 1549.757642 1779.143879 1734.423782 1758.080468 1838.369839 1592.670263 1724.882838 1684.447521 0.970613886 0.9535916 0.920039136 1.056218052 1.02966923 1.043713411 1.091378518 0.94551492 1.024005091 1 10.71805977 -6.261780221 24.99999843 1.02840724 0.948632545 0.484186214 0.037413285 26.68741524 1957553.641 0.01064915 0.016964654 5.47E-07 6.261780221 -0.079774695 S(ph)SPPLPPPAEER ddPTM_K562_Paclitaxel_30min_R1 1 SSPPLPPPAEER 12 0 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 S(0.985)S(0.015)PPLPPPAEER 126.12 3.95E-12 0 832.62 664.42 962.52 731.32 754.45 813.5 729.57 980.16 642.59 880.24 TRUE FALSE 844.2792489 736.9636225 719.5199217 684.4164085 857.2188629 957.7628029 868.0020989 896.88929 704.3136407 700.8466048 1.204656259 1.051533413 1.026643943 0.976556644 1.223119092 1.366579786 1.238505106 1.279722672 1.004946925 1 9.452954904 -6.779885776 24.89633049 1.211171457 1.061167723 0.174823887 0.120787235 319.2210322 430837.1857 0.037433435 0.042522138 1.66E-07 6.779885776 -0.150003734 S(ph)SPPSAGNSPSSLKFPSSHR ddPTM_K562_Paclitaxel_30min_R1 1 SSPPSAGNSPSSLKFPSSHR 20 1 P57682;P57682-2 P57682 KLF3 Krueppel-like factor 3 1 S(0.5)S(0.5)PPS(0.001)AGNSPSSLKFPSSHR 79.237 0.0027987 14212000 1474.2 1490.5 2598 1649.6 1674.6 1417.5 1297.4 1571.3 1890.4 2143.2 TRUE FALSE 1494.843348 1653.237831 1942.102768 1543.802039 1902.708871 1668.873722 1543.574877 1437.808257 2071.981367 1706.414664 0.876014125 0.968837098 1.138118893 0.904705094 1.115033123 0.978000106 0.904571972 0.842590191 1.214230873 1 10.73675255 -5.331519063 4.252172959 1.003953919 0.873342816 0.11828227 0.110172224 0.445538185 14.27282402 0.026970464 0.142303781 4.66E-06 5.331519063 -0.130611104 S(ph)SPPVLQGPAPAGFSQHPGLLVPHTHAR ddPTM_K562_Paclitaxel_30min_R1 1 SSPPVLQGPAPAGFSQHPGLLVPHTHAR 28 0 F1T0I1;O15027-2;O15027-4;O15027-3;O15027;O15027-5 F1T0I1 SEC16A Protein transport protein Sec16A 1 S(0.5)S(0.5)PPVLQGPAPAGFSQHPGLLVPHTHAR 68.741 0.00043744 13057000 385.61 476.42 446.08 402.01 401.67 308.73 423.04 422.37 349.9 609.88 TRUE FALSE 391.0097297 528.4371467 333.461587 376.2268779 456.3842543 363.4789307 503.3096316 386.4870321 383.5094584 485.5861212 0.805232507 1.088245985 0.686719765 0.774789191 0.939862641 0.74853649 1.036499211 0.795918613 0.789786696 1 8.923583378 S(ph)SPQHSLSNPLPR ddPTM_K562_Paclitaxel_30min_R1 3 SSPQHSLSNPLPR 13 0 Q86UE8-2;Q86UE8 Q86UE8-2 TLK2 Serine/threonine-protein kinase tousled-like 2 1 S(0.87)S(0.13)PQHSLSNPLPR;S(0.992)S(0.008)PQHSLSNPLPR;S(0.548)S(0.125)PQHS(0.253)LS(0.074)NPLPR 204.18 2.88E-10 215684000 2973.14 2761.31 4719.26 3837.37 2765.76 3143.47 3078.51 3839.29 3128.66 3997.48 TRUE FALSE 3014.773133 3062.799164 3527.824446 3591.258264 3142.503337 3700.920268 3662.641202 3513.11835 3429.181772 3182.791382 0.947210411 0.962299691 1.108405806 1.128336053 0.987341915 1.162790715 1.15076383 1.103785303 1.077413302 1 11.63607688 -5.748965625 10.25633971 1.096070094 0.954489403 0.488884099 0.054962245 0.192449192 142.7264888 0.013963397 0.034722774 1.78E-06 5.748965625 -0.141580691 S(ph)SPQLAK ddPTM_K562_Paclitaxel_30min_R1 1 SSPQLAK 7 0 Q13370-2;Q13370 Q13370-2 PDE3B "cGMP-inhibited 3,5-cyclic phosphodiesterase B" 1 S(0.866)S(0.134)PQLAK 95.815 0.013908 49476000 5174.7 4486.2 9447.9 6175.4 5196.4 4350.3 4192.5 6516.3 5373.7 7834.9 TRUE FALSE 5247.161765 4976.018487 7062.660795 5779.337484 5904.237656 5121.764624 4988.004989 5962.699642 5889.867895 6238.143079 0.841141618 0.797676235 1.132173582 0.926451576 0.946473587 0.821039941 0.799597721 0.955845284 0.944170055 1 12.60690093 -8.793921209 2.282220044 0.990035453 0.900866648 0.100013482 0.094570787 0.771221463 7.753063504 0.094183155 0.026770844 1.61E-09 8.793921209 -0.089168805 S(ph)SPQLDPLRK ddPTM_K562_Paclitaxel_30min_R1 1 SSPQLDPLRK 10 1 Q8ND56-2;Q8ND56;Q8ND56-3 Q8ND56-2 LSM14A Protein LSM14 homolog A 1 S(0.666)S(0.334)PQLDPLRK 81.709 0.020434 26969000 3708.4 2920.9 6318.3 4353.3 3619 2434.9 2925 4342.9 2169.9 4568.3 TRUE FALSE 3760.329041 3239.81374 4723.167021 4074.098823 4111.96907 2866.695327 3480.00348 3973.943537 2378.32859 3637.277952 1.033830543 0.890724817 1.298544429 1.120095543 1.130507243 0.788143047 0.956760392 1.092559763 0.653875954 1 11.82864346 -7.244173373 24.51820313 0.907708596 1.096137374 0.311169061 0.145815309 861.2141231 1222948.067 0.048276335 0.048158679 5.70E-08 7.244173373 0.188428778 S(ph)SPSARPPDVPGQQPQAAK ddPTM_K562_Paclitaxel_30min_R1 2 SSPSARPPDVPGQQPQAAK 19 1 A0A0A6YYC7;Q96JP5-2;Q96JP5 A0A0A6YYC7 ZFP91-CNTF;ZFP91 E3 ubiquitin-protein ligase ZFP91 1 S(0.451)S(0.451)PS(0.098)ARPPDVPGQQPQAAK;S(0.475)S(0.475)PS(0.05)ARPPDVPGQQPQAAK 106.35 0.00043939 67093000 3297 2439.94 5387.7 3356.3 2895.9 2561.1 2463.72 3644.5 2884.28 5131.9 TRUE FALSE 3343.168172 2706.340901 4027.508501 3141.04194 3290.370608 3015.275125 2931.198009 3334.876977 3161.327981 4086.015963 0.818197531 0.662342224 0.985681049 0.768729728 0.805276004 0.737949913 0.717373117 0.816168367 0.773694476 1 11.99647912 -11.1939982 4.723504862 1.000033245 0.786757577 0.385434797 0.08058422 2.75E-05 4.69E-06 0.076008074 0.018431795 6.40E-12 11.1939982 -0.213275667 S(ph)SPSGITHVIASNAR ddPTM_K562_Paclitaxel_30min_R1 2 SSPSGITHVIASNAR 15 0 Q9BQI6 Q9BQI6 ANKRD32 Ankyrin repeat domain-containing protein 32 1 S(0.499)S(0.499)PS(0.002)GITHVIASNAR;S(0.499)S(0.499)PS(0.002)GITHVIASNAR 102.5 0.0030279 19300400 3056.04 2532.58 3097.49 2861.03 3063.76 2924.94 2434.68 2651.47 3142.67 3465.1 TRUE FALSE 3098.833989 2809.095649 2315.49034 2677.536341 3481.095982 3443.637041 2896.64782 2426.211074 3444.537495 2758.910718 1.123209232 1.018190125 0.839277011 0.970504889 1.261764637 1.248187199 1.049924451 0.879409057 1.248513579 1 11.42988305 -4.560467105 4.310261251 1.056648821 6.374390652 0.018421608 0.143673566 3849.63105 722.9020883 0.038684326 196783.4441 2.75E-05 4.560467105 5.317741831 S(ph)SPSILAVQR ddPTM_K562_Paclitaxel_30min_R1 1 SSPSILAVQR 10 0 O14646;O14646-2 O14646;O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 S(0.931)S(0.069)PSILAVQR 172.21 0.00021334 28026000 1038.1 1134 1265.5 1232.3 1034 1135.7 1211.6 1336.4 885.59 1692.3 TRUE FALSE 1052.636603 1257.813955 946.0088735 1153.265794 1174.848306 1337.100449 1441.494775 1222.864478 970.6548764 1347.408331 0.781230588 0.933506144 0.702095164 0.855914103 0.8719319 0.992349845 1.069827714 0.907567847 0.720386578 1 10.39597141 -6.90832507 2.847337648 0.93972067 0.816713771 0.236847747 0.101157307 0.419447833 6.880043226 0.035073951 0.040326568 1.24E-07 6.90832507 -0.123006899 S(ph)SPSLSDSYSHLSGRPIR ddPTM_K562_Paclitaxel_30min_R1 2 SSPSLSDSYSHLSGRPIR 18 1 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 S(0.88)S(0.077)PS(0.022)LS(0.02)DSYSHLSGRPIR;S(0.937)S(0.061)PS(0.001)LS(0.001)DS(0.001)YSHLSGRPIR 79.511 0.007621 61319000 964.61 748.69 1259.68 865.87 888.52 611.44 731.55 829.1 755.76 1223.52 TRUE FALSE 978.1175161 830.4345061 941.6582045 810.3369737 1009.551467 719.870299 870.3577936 758.6627799 828.3541248 974.1659524 1.004056356 0.852456919 0.966630174 0.831826417 1.036323908 0.738960643 0.893438938 0.778781868 0.850321368 1 9.928023751 -7.26344622 24.99969448 0.841045584 0.929155265 0.186007342 0.087321777 291.2074902 3627615.729 0.027653794 0.025643437 5.45E-08 7.26344622 0.088109681 S(ph)SPSTENMHFPSSISSQTR ddPTM_K562_Paclitaxel_30min_R1 1 SSPSTENMHFPSSISSQTR 19 0 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 S(0.283)S(0.283)PS(0.198)T(0.236)ENMHFPSSISSQTR 63.462 0.022951 123980000 1838.3 2011.8 2811.3 2292.4 1825.3 1772.8 1968.4 2313.8 2250.9 2676 TRUE FALSE 1864.041872 2231.455127 2101.552545 2145.375724 2073.936763 2087.181189 2341.893624 2117.228248 2467.109002 2130.629731 0.874878373 1.047321876 0.986352774 1.006920955 0.97339145 0.979607652 1.099155611 0.993710083 1.157924799 1 11.05706418 -7.745568208 24.92917325 1.06217346 0.982700267 0.323991202 0.059654413 280.0084254 439814.9702 0.021304144 0.016444035 1.80E-08 7.745568208 -0.079473193 S(ph)SPVNNHHSPGQTPTLGQPEAR ddPTM_K562_Paclitaxel_30min_R1 2 SSPVNNHHSPGQTPTLGQPEAR 22 0 H0Y2V6;Q5SW79-2;Q5SW79-3;Q5SW79;E7EWM2;E7EMW0;Q96L14 H0Y2V6 CEP170;CEP170P1 Centrosomal protein of 170 kDa;Cep170-like protein 1 S(0.497)S(0.497)PVNNHHS(0.005)PGQTPTLGQPEAR;S(0.5)S(0.5)PVNNHHSPGQTPTLGQPEAR 127.67 5.31E-08 37092400 1073.23 1013.8 1038.07 1140.97 899.99 861.6 920.77 1295.13 892.59 1190.21 TRUE FALSE 1088.258531 1124.490112 775.9963898 1067.793291 1022.583875 1014.392663 1095.481301 1185.100623 978.3272577 947.6445487 1.148382622 1.186615925 0.818868626 1.126786718 1.079079573 1.070435813 1.156004435 1.250575043 1.032377867 1 9.888202211 -7.742562796 21.83621312 1.130620545 1.068266203 0.012803824 0.113100625 174.2563374 201576.5713 0.04343038 0.033543429 1.81E-08 7.742562796 -0.062354343 S(ph)SPVPPVPERR ddPTM_K562_Paclitaxel_30min_R1 1 SSPVPPVPERR 11 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 S(0.5)S(0.5)PVPPVPERR 92.19 0.0094295 10355000 968.54 938.84 1471.1 1127.6 912.73 738.94 988.29 986.33 817.46 1067.6 TRUE FALSE 982.1025482 1041.345726 1099.702611 1055.280783 1037.059279 869.9806338 1175.812868 902.53511 895.9806855 850.022534 1.155384133 1.225080141 1.29373348 1.241473891 1.220037396 1.023479495 1.383272585 1.061777863 1.05406698 1 9.731357277 -8.488880486 23.61049789 1.037329704 1.217008558 0.475325917 0.087822565 262.1217575 182034.7143 0.046879673 0.022492488 3.24E-09 8.488880486 0.179678854 S(ph)SQPLASKQEK ddPTM_K562_Paclitaxel_30min_R1 1 SSQPLASKQEK 11 1 P17096;P17096-2;P17096-3;A0A669KAX1 P17096 HMGA1 High mobility group protein HMG-I/HMG-Y 1 S(0.622)S(0.378)QPLASKQEK 65.895 0.028923 0 2028.1 1510.8 3392.3 1962.8 1327.7 1017 1331.3 2066.6 934.65 3292.7 TRUE FALSE 2056.499657 1675.754253 2535.87191 1836.914793 1508.555218 1197.350671 1583.907225 1891.029431 1024.427309 2621.645933 0.784430739 0.639199303 0.967282377 0.700672341 0.575422943 0.456717155 0.604165195 0.721313816 0.390757309 1 11.35625714 -6.535626272 6.857879148 0.603983751 0.789909523 0.162603019 0.171120119 0.230294795 52.06508302 0.047708559 0.063660804 2.91E-07 6.535626272 0.185925772 S(ph)SSAGPEGPQLDVPR ddPTM_K562_Paclitaxel_30min_R1 3 SSSAGPEGPQLDVPR 15 0 O75081;O75081-2;O75081-4 O75081 CBFA2T3 Protein CBFA2T3 1 S(0.975)S(0.021)S(0.004)AGPEGPQLDVPR;S(0.983)S(0.014)S(0.002)AGPEGPQLDVPR;S(0.993)S(0.005)S(0.002)AGPEGPQLDVPR 189.04 5.06E-07 461535000 1073.1 806.66 1480.95 1188.03 1133.65 1064.57 950.23 1307.68 1105.55 1198.85 TRUE FALSE 1088.126711 894.7338667 1107.065856 1111.835073 1288.072323 1253.356542 1130.531182 1196.584422 1211.743017 954.5237119 1.139968235 0.937361593 1.159809696 1.164806132 1.349439838 1.313070096 1.184392978 1.253593187 1.269473982 1 9.898637227 -6.123781754 2.431484748 1.240389399 1.04110375 0.300403524 0.103558626 0.296815942 3.41274096 0.028482622 0.060111053 7.52E-07 6.123781754 -0.199285649 S(ph)SSDDEEQLTELDEEMENEICR ddPTM_K562_Paclitaxel_30min_R1 1 SSSDDEEQLTELDEEMENEICR 22 0 E9PL53;E9PMD2;J3KND1;E9PRZ1;Q96ER3;H0YDM3 E9PL53 SAAL1 Protein SAAL1 1 S(0.333)S(0.333)S(0.333)DDEEQLTELDEEMENEICR 115.45 5.51E-08 0 928.86 662.96 1205.8 856.67 677.59 440.18 767.26 1228.4 818.57 1584.4 TRUE FALSE 941.8669058 735.3442148 901.3808769 801.7270205 769.8892297 518.2397426 912.8435796 1124.039753 897.197306 1261.49841 0.746625519 0.582913311 0.714531917 0.635535498 0.610297424 0.410812838 0.723618494 0.891035409 0.711215566 1 10.30092267 -8.690911789 1.037969266 0.961328235 0.623252587 0.496764543 0.109676816 0.415430245 0.901805364 0.105552942 0.036601961 2.04E-09 8.690911789 -0.338075648 S(ph)SSEDAESLAPR ddPTM_K562_Paclitaxel_30min_R1 2 SSSEDAESLAPR 12 0 H0YA82;Q4G0J3;Q4G0J3-3 H0YA82 LARP7 La-related protein 7 1 S(0.999)S(0.001)SEDAESLAPR;S(0.983)S(0.01)S(0.007)EDAESLAPR 232.78 2.38E-31 231290000 1968.59 1760.09 2148.04 1655.5 1432.23 1594.82 1379.06 1906.18 1697.23 1977.05 TRUE FALSE 1996.156334 1952.262578 1605.740735 1549.32364 1627.323974 1877.638935 1640.729436 1744.238111 1860.256525 1574.126125 1.268104444 1.240219921 1.020083912 0.984243648 1.033795163 1.192813527 1.042311293 1.108067571 1.181770949 1 10.62033542 -5.711387761 7.668428769 1.07331409 1.256618864 0.538576698 0.068021107 0.186183568 23.94747893 0.018177613 0.048087719 1.94E-06 5.711387761 0.183304774 S(ph)SSETILSSLAGSDIVK ddPTM_K562_Paclitaxel_30min_R1 2 SSSETILSSLAGSDIVK 17 0 Q01850 Q01850 CDR2 Cerebellar degeneration-related protein 2 1 S(0.372)S(0.372)S(0.253)ET(0.002)ILSSLAGSDIVK;S(0.852)S(0.074)S(0.074)ETILSSLAGSDIVK 278.79 3.40E-132 33114000 4296.6 3476.5 7773.9 4584.1 3430.4 3291.5 3812.1 5548.5 3343.3 6485.8 TRUE FALSE 4356.765656 3856.076027 5811.282799 4290.096344 3897.678557 3875.20131 4535.426075 5077.120292 3664.438903 5163.9904 0.843681982 0.746724089 1.125347328 0.830771557 0.754780365 0.750427675 0.878279339 0.983177717 0.70961381 1 12.3342706 -11.57662371 6.070612723 1.000400587 0.851115284 0.126704278 0.120078852 0.000656562 4.58E-05 0.117254707 0.02836302 2.65E-12 11.57662371 -0.149285303 S(ph)SSFSELCHR ddPTM_K562_Paclitaxel_30min_R1 2 SSSFSELCHR 10 0 Q5T8I3-2;Q5T8I3 Q5T8I3-2 FAM102B Protein FAM102B 1 S(0.333)S(0.333)S(0.333)FSELCHR;S(0.333)S(0.333)S(0.333)FSELCHR 176.78 0.0001657 21118000 3778.8 3688.3 4880.2 4530.6 3766.6 4315.8 3840.2 5534.9 3530.1 6769.6 TRUE FALSE 3831.714859 4091.001067 3648.133152 4240.027594 4279.674689 5081.146533 4568.857903 5064.675697 3869.181878 5389.951804 0.710899651 0.759005129 0.676839661 0.786654083 0.794009825 0.94270723 0.847662107 0.939651389 0.717850923 1 12.39605666 -6.84085464 1.997696707 0.882416333 0.722920408 0.49324278 0.074938394 0.275552942 2.258914637 0.024775516 0.030406407 1.44E-07 6.84085464 -0.159495925 S(ph)SSGTGLSSPPLATQTVVPLQHCK ddPTM_K562_Paclitaxel_30min_R1 2 SSSGTGLSSPPLATQTVVPLQHCK 24 0 Q9GZU3;Q5VVU5;F8WB89;Q9GZU3-2 Q9GZU3 TMEM39B Transmembrane protein 39B 1 S(0.33)S(0.33)S(0.33)GT(0.011)GLSSPPLATQTVVPLQHCK;S(0.325)S(0.325)S(0.325)GT(0.026)GLSSPPLATQTVVPLQHCK 148.26 9.46E-26 38140000 4665.3 3754.3 7226.4 4416.2 2980.3 3265.3 3244.2 4724 3864.4 6724 TRUE FALSE 4730.628594 4164.20717 5402.005945 4132.964698 3386.267317 3844.355108 3859.770014 4322.666714 4235.592887 5353.645109 0.883627603 0.777826525 1.009033254 0.771990786 0.632516211 0.718081798 0.720961128 0.807424965 0.791160564 1 12.38630579 -6.487798738 24.82726637 0.757336758 0.880859434 0.180550863 0.103939697 815.1441205 576903.8325 0.028359019 0.042040001 3.25E-07 6.487798738 0.123522676 S(ph)SSLEGFHNHFK ddPTM_K562_Paclitaxel_30min_R1 2 SSSLEGFHNHFK 12 0 Q13480-2;B7Z3B9;Q13480 Q13480-2 GAB1 GRB2-associated-binding protein 1 1 S(0.495)S(0.495)S(0.01)LEGFHNHFK;S(0.453)S(0.453)S(0.093)LEGFHNHFK 99.941 0.0071887 33933000 4008.2 3381.8 6159.3 3807.6 3614.7 3364.7 2792.2 3911.6 3319.3 5429.2 TRUE FALSE 4064.327166 3751.036361 4604.308538 3563.397578 4107.083337 3961.382302 3322.005374 3579.285165 3638.133596 4322.72606 0.940223162 0.867747877 1.065140024 0.824340365 0.950114183 0.916408361 0.768497778 0.828015728 0.841629459 1 12.0777257 -7.55486208 24.35111482 0.844810665 0.928322396 0.138583687 0.080010427 235.1448251 179029.5343 0.02893277 0.022411434 2.79E-08 7.55486208 0.083511731 S(ph)SSLIQLTSQNS(ph)SPNQQR ddPTM_K562_Paclitaxel_30min_R1 1 SSSLIQLTSQNSSPNQQR 18 0 H7C419;O95639 H7C419 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 2 S(0.461)S(0.166)S(0.373)LIQLTSQNS(0.926)S(0.073)PNQQR 212.85 4.45E-24 22323000 1230.9 1033.5 1227.9 870.25 772.64 917.58 892.62 1170.9 977.17 1375.3 TRUE FALSE 1248.136398 1146.341025 917.9014585 814.4360601 877.8866489 1080.29993 1061.989985 1071.424736 1071.031545 1095.013105 1.13983695 1.046874252 0.83825614 0.743768322 0.801713372 0.986563471 0.969842261 0.978458369 0.978099294 1 10.09673242 -9.755563848 13.60071215 1.000005517 0.935756279 0.01983464 0.112111062 0 0 0.120982203 0.029342494 1.76E-10 9.755563848 -0.064249238 S(ph)SSLPAYGR ddPTM_K562_Paclitaxel_30min_R1 1 SSSLPAYGR 9 0 Q08495-3;Q08495-2;Q08495;Q08495-4 Q08495-3 DMTN Dematin 1 S(0.621)S(0.051)S(0.328)LPAYGR 131.12 0.00064355 57896000 1955.2 1848.1 2694.9 1617.6 1739.5 1785.2 1835.1 1935 1946.2 2247.2 TRUE FALSE 1982.578832 2049.881808 2014.539165 1513.854376 1976.44935 2101.780155 2183.300645 1770.609672 2133.141206 1789.219406 1.108069153 1.145684984 1.125931877 0.846097673 1.104643367 1.174691123 1.220253166 0.989598965 1.192218907 1 10.8051146 -6.983440624 24.99990791 1.123304127 1.056231855 0.064942238 0.104677314 680.5896647 1027489.312 0.03328025 0.037727334 1.04E-07 6.983440624 -0.067072272 S(ph)SSMSSIDLVSASDDVHR ddPTM_K562_Paclitaxel_30min_R1 2 SSSMSSIDLVSASDDVHR 18 0 A0A0A0MRE4;A0A2R8YFA1;A0A2U3TZL3;Q9Y5P4;Q9Y5P4-3 A0A0A0MRE4 COL4A3BP Collagen type IV alpha-3-binding protein 1 S(0.333)S(0.333)S(0.333)MS(0.002)SIDLVSASDDVHR;S(0.333)S(0.333)S(0.333)MSSIDLVSASDDVHR 239.13 6.22E-53 93279000 4231.8 3924.9 4218.4 4056 3458.5 3760.5 4293.3 5747.7 4569.2 6288.4 TRUE FALSE 4291.058256 4353.433855 3153.412747 3795.866314 3929.606253 4427.371875 5107.931262 5259.397009 5008.092076 5006.820628 0.857042538 0.869500663 0.629823391 0.758139066 0.784850616 0.884268122 1.020194579 1.050446461 1.000253943 1 12.28967906 -7.550659578 2.376487038 1.02447091 0.774652011 0.761150915 0.062666576 0.151680218 1.729797864 0.029121094 0.022252708 2.81E-08 7.550659578 -0.249818899 S(ph)SSMSSLTGAYTSGIPSSSR ddPTM_K562_Paclitaxel_30min_R1 1 SSSMSSLTGAYTSGIPSSSR 20 0 A8CG34-2;A8CG34 A8CG34-2 POM121C Nuclear envelope pore membrane protein POM 121C 1 S(0.358)S(0.358)S(0.259)MS(0.024)S(0.002)LTGAYTSGIPSSSR 120.08 2.74E-05 22888000 904.95 891.74 1309.4 1087.5 792.93 752.27 740.81 1226.4 723.46 1316.6 TRUE FALSE 917.622092 989.1031889 978.8257755 1017.752617 900.9404904 885.6745221 881.3748302 1122.209665 792.9515655 1048.276197 0.8753629 0.943552082 0.933747974 0.970882121 0.859449535 0.844886609 0.840784931 1.070528614 0.756433817 1 10.03380317 -11.51329425 3.00536209 1.003286756 0.904432871 0.117277184 0.081708071 88446282.65 106375093.8 2407478.173 0.020464406 3.07E-12 11.51329425 -0.098853884 S(ph)SSNY(ph)CT(ph)T(ph)RPPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SSSNYCTTRPPSR 13 1 A8K8P3-4 A8K8P3-4 5 S(0.349)S(0.303)S(0.349)NY(1)CT(1)T(1)RPPS(1)R 55.213 0.025252 39071000 158.01 246.71 361.8 204.4 174.28 268.2 156.88 201.9 212.64 158.31 TRUE FALSE 160.2226275 273.6466321 270.4591153 191.2906989 198.0198866 315.7615043 186.647161 184.7473348 233.0650221 126.0463351 1.271140707 2.171000306 2.145711853 1.517622061 1.57100868 2.505122454 1.480782134 1.46570969 1.849042433 1 6.977810361 -10.04938201 0.5009308 0.915274848 1.843660169 0.281518035 0.371187171 5.926082557 1.790685616 1.398844129 0.188659398 8.93E-11 10.04938201 0.928385321 S(ph)SSPATEQSWMENDFDELREEGFRR ddPTM_K562_Paclitaxel_30min_R1 2 SSSPATEQSWMENDFDELREEGFRR 25 2 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 S(0.328)S(0.328)S(0.328)PAT(0.016)EQSWMENDFDELREEGFRR;S(0.331)S(0.331)S(0.331)PAT(0.008)EQSWMENDFDELREEGFRR 73.346 0.00016403 152063500 1244.31 1353.73 1343.11 1404.68 1079.93 1156.01 900.49 1276.22 1059.62 1639.23 TRUE FALSE 1261.734179 1501.534819 1004.025269 1314.590112 1227.034749 1361.012142 1071.353277 1167.797145 1161.401236 1305.154026 0.966732013 1.150465607 0.769277226 1.007229864 0.94014555 1.042798103 0.820863481 0.894758106 0.889857605 1 10.35000436 -7.758937489 24.99992503 0.892599647 0.977139236 0.128817224 0.098303173 131.2078564 1311102.38 0.037881302 0.027957075 1.74E-08 7.758937489 0.084539589 S(ph)SSPCRTPEPDNDAHLR ddPTM_K562_Paclitaxel_30min_R1 2 SSSPCRTPEPDNDAHLR 17 1 Q9Y2K6 Q9Y2K6 USP20 Ubiquitin carboxyl-terminal hydrolase 20 1 S(0.373)S(0.373)S(0.25)PCRT(0.005)PEPDNDAHLR;S(0.324)S(0.324)S(0.324)PCRT(0.028)PEPDNDAHLR 149.3 3.78E-08 116121500 2896.94 2898.62 4297.9 3576.8 3487.16 3259.8 2719.79 3528 3775.7 4515.8 TRUE FALSE 2937.506098 3215.101134 3212.841989 3347.400057 3962.17023 3837.87976 3235.855954 3228.274379 4138.372855 3595.477481 0.817000277 0.894207001 0.893578671 0.931002926 1.101987219 1.067418661 0.89997948 0.897870838 1.150993958 1 11.81196766 -6.54167536 6.34134852 1.011831618 0.876977391 0.435045857 0.077741871 0.173855566 26.46660741 0.024101509 0.032069729 2.87E-07 6.54167536 -0.134854227 S(ph)SSPDLSS(ph)S(ph)S(ph)KLT(ph)ASR ddPTM_K562_Paclitaxel_30min_R1 1 SSSPDLSSSSKLTASR 16 1 A0A2R8YCY2;A0A0C4DFX2;A0A286YFA9;A0A2R8Y5V8;Q5TBA9 A0A2R8YCY2 FRY Protein furry homolog 5 S(0.713)S(0.167)S(0.179)PDLS(0.226)S(0.896)S(0.898)S(0.919)KLT(0.886)AS(0.116)R 54.073 0.031219 19841000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 S(ph)SSPELVTHLK ddPTM_K562_Paclitaxel_30min_R1 2 SSSPELVTHLK 11 0 E9PNR6;H0YE29;Q07960 E9PNR6 ARHGAP1 Rho GTPase-activating protein 1 1 S(0.383)S(0.383)S(0.234)PELVTHLK;S(0.373)S(0.373)S(0.254)PELVTHLK 141.34 0.00042447 67534000 11702.9 9503.1 19996.4 13127.6 9038.7 8095.2 8431.7 13110.9 6423.1 16204.5 TRUE FALSE 11866.77671 10540.6806 14948.06151 12285.65449 10269.92397 9530.770058 10031.57106 11997.04721 7040.067454 12902.01401 0.919761574 0.816979472 1.158583575 0.952227651 0.795993863 0.738704055 0.777519777 0.929858486 0.545656473 1 13.65530867 -6.7532554 5.94439992 0.789885468 0.966728006 0.254923153 0.136987338 0.213414334 26.83646387 0.040431173 0.049734715 1.76E-07 6.7532554 0.176842537 S(ph)SSPGKPQAVSSLNSSHSR ddPTM_K562_Paclitaxel_30min_R1 1 SSSPGKPQAVSSLNSSHSR 19 1 Q9UHB7;Q9UHB7-2;Q9UHB7-3 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 S(0.333)S(0.333)S(0.333)PGKPQAVSSLNSSHSR 139.12 2.46E-13 45377000 3300.1 2930.8 5873.9 4288.2 3179.8 2773.5 2366.9 3722.4 3066.9 4679.2 TRUE FALSE 3346.311582 3250.794655 4390.961298 4013.174045 3612.942594 3265.341283 2816.006919 3406.158886 3361.489448 3725.576472 0.898199677 0.872561516 1.178599159 1.077195456 0.969767396 0.876466047 0.755858037 0.914263581 0.902273641 1 11.86324796 -7.155298458 3.977974132 0.876118739 1.010359541 0.23562995 0.098277985 0.335699788 9.374060126 0.035828755 0.035791556 6.99E-08 7.155298458 0.134240802 S(ph)SSPNSPLPMFR ddPTM_K562_Paclitaxel_30min_R1 1 SSSPNSPLPMFR 12 0 A0A0U1RR27;Q7Z401;Q7Z401-2;H3BTW5 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 S(0.548)S(0.008)S(0.005)PNS(0.439)PLPMFR 126.32 0.0014311 55847000 568.64 440.93 461.44 667.06 560.42 434.97 422.45 610.18 356.09 642.53 TRUE FALSE 576.6027144 489.0722285 344.943765 624.2777573 636.758692 512.1058222 502.6076822 558.3414004 390.2940356 511.5820333 1.127097273 0.955999618 0.674268724 1.220288667 1.244685408 1.001023861 0.98245765 1.091401504 0.762915838 1 8.998821788 -8.746957644 24.99943325 0.881457834 1.032346404 0.129925001 0.160778834 462.2136613 797915.6851 0.114909244 0.043003645 1.79E-09 8.746957644 0.15088857 S(ph)SSPTSSLTQPIEMPTLS(ph)SSPTEERPTVGPGQQDNPLLK ddPTM_K562_Paclitaxel_30min_R1 1 SSSPTSSLTQPIEMPTLSSSPTEERPTVGPGQQDNPLLK 39 1 Q7LBC6-2;Q7LBC6 Q7LBC6-2 KDM3B Lysine-specific demethylase 3B 2 S(0.296)S(0.296)S(0.296)PT(0.093)S(0.008)S(0.008)LT(0.001)QPIEMPT(0.075)LS(0.283)S(0.283)S(0.283)PT(0.075)EERPT(0.002)VGPGQQDNPLLK 94.732 2.48E-14 21370000 858.79 832.39 1244.6 858.33 723.52 605.2 572.38 741.98 801.2 1355.6 TRUE FALSE 870.8157096 923.2731552 930.385337 803.2805555 822.0756733 712.5237226 680.986117 678.9441677 878.1588399 1079.327976 0.806812877 0.855414828 0.862004282 0.744241392 0.761655115 0.660154965 0.630935297 0.629043426 0.813616305 1 10.07591761 -6.386707842 3.273631296 0.721732974 0.843012899 0.107803536 0.104976796 0.402648838 8.05765584 0.029937114 0.046830759 4.10E-07 6.386707842 0.121279925 S(ph)SSQRSPSPGPNHT(ph)SNSSNASNATVVPQNSSAR ddPTM_K562_Paclitaxel_30min_R1 1 SSSQRSPSPGPNHTSNSSNASNATVVPQNSSAR 33 1 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 2 S(0.246)S(0.246)S(0.246)QRS(0.246)PS(0.245)PGPNHT(0.297)S(0.316)NS(0.115)S(0.04)NAS(0.002)NATVVPQNSSAR 62.706 0.0002686 2774600 333.12 400.34 412.57 444.25 262.03 307.61 229.56 481.32 281.73 370.49 TRUE FALSE 337.7847078 444.0504751 308.4116009 415.7577934 297.7229222 362.1603144 273.1178116 440.4288617 308.7914253 294.9839346 1.145095268 1.505337827 1.045519992 1.409425208 1.009285209 1.227728944 0.925873512 1.493060503 1.046807602 1 8.204492575 -6.762631695 24.99999453 1.137746528 1.276213748 0.138152047 0.190692479 72.91407983 1528839.705 0.05480431 0.06569135 1.73E-07 6.762631695 0.13846722 S(ph)SSQRSPSPGPNHTSNSSNASNATVVPQNSSAR ddPTM_K562_Paclitaxel_30min_R1 1 SSSQRSPSPGPNHTSNSSNASNATVVPQNSSAR 33 1 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 S(0.238)S(0.238)S(0.238)QRS(0.238)PS(0.046)PGPNHT(0.002)S(0.001)NSSNASNATVVPQNSSAR 99.319 3.19E-12 31162000 1398.8 1069.7 1571.7 1549.9 1160.9 1424 1199.6 1181.9 1068.6 1241.8 TRUE FALSE 1418.387516 1186.493463 1174.904896 1450.496351 1319.034234 1676.526406 1427.217838 1081.490218 1171.243805 988.7204784 1.434568765 1.200029219 1.188308447 1.467043905 1.334082041 1.695652556 1.443499825 1.093828075 1.184605589 1 9.949418903 -10.39297937 8.672711145 1.000000004 1.339626182 0.261880695 0.17019315 0 0 0.178076132 0.043189806 4.05E-11 10.39297937 0.339626179 S(ph)SSSASQSNHSCTSMPSSPATPASGTK ddPTM_K562_Paclitaxel_30min_R1 1 SSSSASQSNHSCTSMPSSPATPASGTK 27 0 H3BPE1;H3BQK9;Q9UPN3;H0Y390;A0A590UJG2;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3-5;H0Y6T5;H0Y4F5;H0Y314 H3BPE1 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 S(0.26)S(0.26)S(0.26)S(0.104)AS(0.045)QS(0.068)NHS(0.001)CTSMPSSPATPASGTK 95.543 8.61E-07 19709000 1705.5 1504 2726.4 1697.2 948.44 1681.4 1661.4 2805.5 1972.5 2979.8 TRUE FALSE 1729.382262 1668.211806 2038.0866 1588.349188 1077.633585 1979.572682 1976.641977 2567.155264 2161.967438 2372.515124 0.728923598 0.703140641 0.859040509 0.669479057 0.454215686 0.834377266 0.833141992 1.082039578 0.911255493 1 11.21220157 -7.850624719 2.210571663 0.992778563 0.694381281 0.591800482 0.108454829 0.226275734 2.248145605 0.057580833 0.035024898 1.41E-08 7.850624719 -0.298397282 S(ph)SSSQTLTQFDSNIAPADPDTAIVHPVPIR ddPTM_K562_Paclitaxel_30min_R1 1 SSSSQTLTQFDSNIAPADPDTAIVHPVPIR 30 0 Q96D71-3;Q96D71;H0YE73 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 1 S(0.695)S(0.179)S(0.047)S(0.047)QT(0.031)LTQFDSNIAPADPDTAIVHPVPIR 174.07 6.00E-38 65639000 0 0 0 0 89.874 0 0 0 0 0 TRUE FALSE 0 0 0 0 102.1163604 0 0 0 0 0 0 S(ph)SSYLDNLVWR ddPTM_K562_Paclitaxel_30min_R1 1 SSSYLDNLVWR 11 0 Q16659 Q16659 MAPK6 Mitogen-activated protein kinase 6 1 S(0.942)S(0.013)S(0.045)YLDNLVWR 118.87 0.0033201 5147400 1442.8 1488.7 1671.9 1383.1 1490.1 1623.4 1391.1 1465.1 1440 1761.5 TRUE FALSE 1463.003651 1651.2413 1249.808167 1294.394157 1693.076848 1911.287196 1655.053963 1340.63061 1578.318434 1402.505333 1.043135892 1.177351174 0.891125429 0.922915675 1.207180328 1.362766437 1.18006964 0.955882718 1.125356458 1 10.45379054 -4.137400351 13.11815276 1.091517825 1.065819036 0 0.141776045 0 0 0.03520405 0 7.29E-05 4.137400351 -0.02569879 S(ph)STDSLPGPISR ddPTM_K562_Paclitaxel_30min_R1 1 SSTDSLPGPISR 12 0 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 S(0.887)S(0.103)T(0.009)DS(0.001)LPGPISR 128.57 0.00108 12320000 1479.4 1344 2472.1 2068.3 1306.1 1730 1319.9 1755.4 1008.8 2113.3 TRUE FALSE 1500.116164 1490.742465 1847.98778 1935.648495 1484.012932 2036.79121 1570.344135 1606.267813 1105.699747 1682.6083 0.891542116 0.885971182 1.09828757 1.150385681 0.881971718 1.210496352 0.933279679 0.954629674 0.657134371 1 10.71648365 -8.538729172 24.3009679 0.821005272 1.00967233 0.21821945 0.13352003 246.8780683 378488.6783 0.08780674 0.033213271 2.89E-09 8.538729172 0.188667057 S(ph)STPLPTISSSAENTR ddPTM_K562_Paclitaxel_30min_R1 1 SSTPLPTISSSAENTR 16 0 G5E972;P42167;H0YJH7;P42167-3;P42167-2;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 S(0.476)S(0.049)T(0.476)PLPTISSSAENTR 170.74 1.44E-08 5353300 1342.1 1237 1509.8 1199.2 1080.1 988.5 952.72 1537.7 1208.2 1170.1 TRUE FALSE 1360.893541 1372.059843 1128.632317 1122.288679 1227.227906 1163.796596 1133.493646 1407.062787 1324.253008 931.6329777 1.460761451 1.472747183 1.211455953 1.204646794 1.317286888 1.24920073 1.216674027 1.510318785 1.421432088 1 9.863617898 -5.748691767 24.75452413 1.281827611 1.466754469 0.269830459 0.129873858 289.9255232 562993.7018 0.033401631 0.087085908 1.78E-06 5.748691767 0.184926858 S(ph)T(ph)AFS(ph)FRAS(ph)KELK ddPTM_K562_Paclitaxel_30min_R1 1 STAFSFRASKELK 13 2 A0A0U1RRH1;A0A0X1KG73;A0A087X080;Q15413-3;Q15413-2;Q15413 A0A0U1RRH1 RYR3 Ryanodine receptor 3 4 S(1)T(1)AFS(1)FRAS(1)KELK 53.327 0.029497 0 202.5 246.07 163.23 270.78 266.19 206.79 145.8 266.74 253.72 326.58 TRUE FALSE 205.3356248 272.9367548 122.0205677 253.4133828 302.4495846 243.461303 173.4647889 244.0787721 278.0909397 260.0228167 0.789683103 1.049664634 0.469268694 0.974581331 1.163165558 0.93630746 0.667113721 0.938682132 1.069486683 1 8.022494414 -4.843186396 0.143607814 1.042092549 0.596074712 0.079581157 0.189550147 105.5648888 2.240278252 1.069679793 8.994389738 1.43E-05 4.843186396 -0.446017837 S(ph)T(ph)HGSLS(ph)GLGLMGIK ddPTM_K562_Paclitaxel_30min_R1 1 STHGSLSGLGLMGIK 15 0 Q96IC2-2;Q96IC2 Q96IC2-2 44M2.3 Putative RNA exonuclease NEF-sp 3 S(0.999)T(0.995)HGS(0.017)LS(0.989)GLGLMGIK 53.597 0.03013 0 282.36 312.98 476.2 429.67 339.02 319.02 272.74 246.23 397.55 283.97 TRUE FALSE 286.3139112 347.1522148 355.9774204 402.1128893 385.2002637 375.5937177 324.4909912 225.3112246 435.7364538 226.0967581 1.266333554 1.535414385 1.574447256 1.778499138 1.703696536 1.661207887 1.435186395 0.996525675 1.927212302 1 7.820796496 -12.74260655 0.336840075 1.21E-09 1.565698026 0.27935532 0.253986742 91.13244648 3.139202645 65.84927036 0.215175057 1.81E-13 12.74260655 1.565698025 S(ph)T(ph)MLAY(ph)DAS(ph)SIQYRK ddPTM_K562_Paclitaxel_30min_R1 1 STMLAYDASSIQYRK 15 1 B7Z279;E7EV50;P47870-1;P47870 B7Z279 GABRB2 Gamma-aminobutyric acid receptor subunit beta-2 4 S(1)T(1)MLAY(0.998)DAS(0.996)S(0.007)IQYRK 53.491 0.029737 18246000 97.752 0 0 0 0 0 0 0 0 0 TRUE FALSE 99.12082959 0 0 0 0 0 0 0 0 0 0 S(ph)T(ph)PVIVS(ph)ATT(ph)KK ddPTM_K562_Paclitaxel_30min_R1 1 STPVIVSATTKK 12 1 Q02952-3;Q02952-2;Q02952 Q02952-3 AKAP12 A-kinase anchor protein 12 4 S(1)T(1)PVIVS(0.502)AT(0.502)T(0.997)KK 52.5 0.030551 46521000 2038.8 1981.9 2085.9 2162.3 2171.2 1809 1590.7 2203.7 1459 2169.2 TRUE FALSE 2067.34949 2198.290544 1559.288747 2023.619756 2466.954199 2129.80075 1892.527021 2016.48193 1599.143469 1727.115849 1.196995263 1.272810127 0.902828115 1.171675749 1.428366371 1.23315454 1.095773061 1.167542948 0.925903997 1 10.75414914 -8.734005171 8.389909249 0.962903901 1.184028273 0.327297138 0.126564634 0.239689723 65.09186861 0.095198466 0.034346052 1.84E-09 8.734005171 0.221124373 S(ph)T(ph)T(ph)IVT(ph)AYVMTVT(ph)GLGWR ddPTM_K562_Paclitaxel_30min_R1 1 STTIVTAYVMTVTGLGWR 18 0 Q9H1R2-2;Q9H1R2-3;Q9H1R2 Q9H1R2-2 DUSP15 Dual specificity protein phosphatase 15 5 S(0.998)T(0.998)T(0.998)IVT(0.988)AY(0.017)VMT(0.011)VT(0.989)GLGWR 53.519 0.020031 15150000 5856.7 4685.5 5929.1 5740.1 4650.7 4313.3 4900.9 5678 3136.5 6510.5 TRUE FALSE 5938.711869 5197.078735 4432.225375 5371.955678 5284.204077 5078.203193 5830.820191 5195.618459 3437.774839 5183.656526 1.145660759 1.002589332 0.855038399 1.036325546 1.019397032 0.979656574 1.124846942 1.002307624 0.663194952 1 12.33975441 -8.593759577 14.53470501 0.831754999 1.01823835 0.336962983 0.10630944 1.576963342 320.8245372 0.068958309 0.026055692 2.55E-09 8.593759577 0.186483351 S(ph)TDPCQGHRESPGALVETSAGEEAQGQEGPAAAQLDVLR ddPTM_K562_Paclitaxel_30min_R1 1 STDPCQGHRESPGALVETSAGEEAQGQEGPAAAQLDVLR 39 1 E9PK89;Q8TBN0;Q8TBN0-2 E9PK89 RAB3IL1 Guanine nucleotide exchange factor for Rab-3A 1 S(0.23)T(0.23)DPCQGHRES(0.206)PGALVET(0.167)S(0.167)AGEEAQGQEGPAAAQLDVLR 64.685 7.02E-06 23404000 391.9 390.01 484.36 398.36 262.98 322.5 362.23 533.27 545.22 456.1 TRUE FALSE 397.3878091 432.5926107 362.0773275 372.8109726 298.8023283 379.6908469 430.9612515 487.9653849 597.5908171 363.1465696 1.094290411 1.191234193 0.997055618 1.026612954 0.822814679 1.045558126 1.186741904 1.343714703 1.645591249 1 8.504408142 -8.027490067 2.644239612 1.369573831 1.026432123 0.382793068 0.169633498 0.269430026 3.740046946 0.08988762 0.049415182 9.39E-09 8.027490067 -0.343141707 S(ph)TELLIR ddPTM_K562_Paclitaxel_30min_R1 1 STELLIR 7 0 K7EMV3;A0A590UJJ6;B4DEB1;K7EK07;K7ES00;Q71DI3;Q16695;P84243;P68431;K7EP01;Q5TEC6;Q6NXT2 K7EMV3 H3F3B;H3F3A;HIST2H3A;HIST3H3;HIST1H3A;HIST2H3PS2;H3F3C Histone H3;Histone H3.2;Histone H3.1t;Histone H3.3;Histone H3.1;Histone H3.3C 1 S(0.977)T(0.023)ELLIR 87.639 0.024048 3371900 1333.8 1416.1 2053.5 1602.9 1340.2 1269.6 1179.9 1366.6 1323.6 1469.3 TRUE FALSE 1352.477315 1570.714587 1535.068528 1500.097168 1522.75793 1494.745734 1403.779866 1250.4988 1450.737694 1169.855853 1.156105952 1.342656518 1.312186047 1.282292313 1.301662872 1.277717874 1.199959688 1.068934088 1.24009953 1 10.19211506 -8.728006941 0.581145625 1.011730515 1.29344061 0.579342953 0.069097011 0.527453671 0.427780394 0.069035585 0.03374062 1.87E-09 8.728006941 0.281710094 S(ph)TELVLSPDMPR ddPTM_K562_Paclitaxel_30min_R1 3 STELVLSPDMPR 12 0 Q8TDY2-2;Q8TDY2 Q8TDY2-2 RB1CC1 RB1-inducible coiled-coil protein 1 1 S(0.953)T(0.047)ELVLSPDMPR;S(0.993)T(0.007)ELVLSPDMPR;S(0.992)T(0.008)ELVLSPDMPR 229.75 4.38E-31 78269000 1491.96 1862.67 2284.68 1773.08 1561.43 1472.52 1728.78 1982 1463.62 2010.64 TRUE FALSE 1512.852043 2066.04261 1707.884277 1659.362585 1774.123201 1733.650747 2056.80698 1813.616729 1604.207241 1600.870464 0.945018399 1.290574507 1.066847266 1.036537697 1.108224082 1.082942552 1.284805377 1.132894116 1.002084351 1 10.64464086 -8.76437875 24.49953331 1.001042065 1.123782122 0.181419269 0.099273839 98.94002697 824565.7787 0.08081239 0.024429166 1.72E-09 8.76437875 0.122740057 S(ph)TEPELIQVK ddPTM_K562_Paclitaxel_30min_R1 4 STEPELIQVK 10 0 M0QXM4;Q15758-3;Q15758-2;Q15758 M0QXM4 SLC1A5 Amino acid transporter;Neutral amino acid transporter B(0) 1 S(0.972)T(0.028)EPELIQVK;S(0.995)T(0.005)EPELIQVK;S(0.989)T(0.011)EPELIQVK;S(0.991)T(0.009)EPELIQVK 171.32 7.22E-05 75354000 5692.37 5600.05 11329.6 7209.7 5732.05 4471.2 5488.91 7340.7 6510.6 9274.7 TRUE FALSE 5772.080742 6211.482397 8469.302357 6747.302111 6512.852254 5264.104541 6530.402018 6717.061716 7135.97222 7384.511049 0.781646978 0.841150126 1.146900899 0.913710071 0.881961204 0.712857562 0.884337768 0.909614959 0.966343225 1 12.85028668 -8.79083469 2.416212228 0.997814053 0.884628625 0.130973532 0.10569751 0.665589856 7.428321223 0.107158169 0.030322712 1.62E-09 8.79083469 -0.113185428 S(ph)TGSATSLASQGER ddPTM_K562_Paclitaxel_30min_R1 2 STGSATSLASQGER 14 0 H0Y2V6;Q5SW79-2;Q5SW79-3;Q5SW79 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 S(0.943)T(0.025)GS(0.03)AT(0.001)SLASQGER;S(0.981)T(0.018)GS(0.001)ATSLASQGER 178.03 3.44E-06 138656000 1204.95 1060.09 1159.25 1206.96 1109.29 1257.65 1200.43 1134.06 972.15 1375.56 TRUE FALSE 1221.823018 1175.834211 866.5830001 1129.550988 1260.394078 1480.676569 1428.205326 1037.714524 1065.529351 1095.220117 1.11559585 1.073605381 0.791240945 1.031346092 1.150813484 1.351944277 1.304034964 0.947494032 0.972890595 1 10.09700514 -5.258328914 20.3322644 1.076468228 1.115595885 0.005829619 0.158053711 274.0113586 1789648.177 0.044070392 0.291477955 5.52E-06 5.258328914 0.039127657 S(ph)THVVLEK ddPTM_K562_Paclitaxel_30min_R1 1 STHVVLEK 8 0 E7EW31 E7EW31 PROB1 Proline-rich basic protein 1 1 S(0.5)T(0.5)HVVLEK 72.547 0.029459 10192000 2645 2534.6 3614.6 3159 2793.4 3100.5 2158.4 2668.7 3809.6 2679.7 TRUE FALSE 2682.038161 2811.336199 2702.049525 2956.395879 3173.908373 3650.330142 2567.945132 2441.977277 4175.529102 2133.575669 1.257062592 1.317664164 1.266441854 1.385653165 1.487600566 1.710897905 1.203587559 1.144546834 1.957056955 1 11.05905756 -6.395545433 4.126711945 1.429064516 1.284659895 0.050914144 0.260766381 0.764466315 21.83216469 0.073610667 0.111703512 4.02E-07 6.395545433 -0.144404621 S(ph)TPPPNNLVNPVQELETERR ddPTM_K562_Paclitaxel_30min_R1 1 STPPPNNLVNPVQELETERR 20 1 Q8NDI1-3;Q8NDI1-2;Q8NDI1 Q8NDI1-3 EHBP1 EH domain-binding protein 1 1 S(0.823)T(0.177)PPPNNLVNPVQELETERR 64.298 0.013489 16861000 360.19 324.95 408.2 483.45 366.09 385.55 363.06 372.34 232.49 357.09 TRUE FALSE 365.2337713 360.4291399 305.1448614 452.4436808 415.957656 453.9218791 431.9487397 340.7073929 254.8217033 284.314862 1.284610198 1.267711218 1.073263843 1.591347275 1.463017631 1.596546434 1.519261908 1.19834535 0.896265856 1 8.151345705 -8.555294518 3.955967757 0.956540838 1.398307486 0.576139204 0.154381 0.17432062 5.935454033 0.125617906 0.044980164 2.78E-09 8.555294518 0.441766648 S(ph)TPVS(ph)RT(ph)T(ph)K ddPTM_K562_Paclitaxel_30min_R1 2 STPVSRTTK 9 1 A0A2R8Y4B4;A0A2R8YDY3;A0A2R8YEC5;B1AP15;B1AP13;H7BY55;P08174-4;P08174;P08174-3;P08174-5;P08174-2;P08174-6;P08174-7 A0A2R8Y4B4 CD55 Complement decay-accelerating factor 4 S(0.998)T(0.013)PVS(0.989)RT(1)T(1)K;S(0.999)T(0.009)PVS(0.993)RT(1)T(1)K 74.944 0.017726 261190000 193.14 54.202 126.53 0 117.226 49.756 0 56.911 0 170.67 TRUE FALSE 195.8445559 60.11995766 94.5859366 0 133.1941659 58.57952799 0 52.07605532 0 135.8873603 1.441227171 0.442424943 0.696061329 0 0.980180685 0.431088865 0 0.383229575 0 1 7.086267459 S(ph)TSATDTHHVEMAR ddPTM_K562_Paclitaxel_30min_R1 4 STSATDTHHVEMAR 14 0 H3BQP2;H3BNP3;H3BTL2;H3BS02;O14874-2;O14874-3;O14874 H3BQP2 BCKDK "[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial" 1 S(0.784)T(0.045)S(0.158)AT(0.013)DTHHVEMAR;S(0.946)T(0.049)S(0.005)ATDTHHVEMAR;S(0.961)T(0.035)S(0.003)ATDTHHVEMAR;S(0.803)T(0.152)S(0.042)AT(0.003)DTHHVEMAR 197.73 4.78E-09 187472600 5506.55 4682.08 6962.63 5701.63 4304.25 5128.25 4585.06 5503.79 4895.42 6625.4 TRUE FALSE 5583.658689 5193.285328 5204.827944 5335.952971 4890.561722 6037.673133 5455.051199 5036.208686 5365.646964 5275.139843 1.058485435 0.984482968 0.986671083 1.011528249 0.927096128 1.144552242 1.034105514 0.954706195 1.017157293 1 12.36499362 -5.243002179 22.89612497 1.007486202 1.058485577 0.074596471 0.054655567 3860.321981 4793671.854 0.013804221 0.406249444 5.71E-06 5.243002179 0.050999374 S(ph)TSFRGGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDR ddPTM_K562_Paclitaxel_30min_R1 1 STSFRGGMGSGGLATGIAGGLAGMGGIQNEKETMQSLNDR 40 2 F8VZY9;P05783 F8VZY9 KRT18 "Keratin, type I cytoskeletal 18" 1 S(0.39)T(0.167)S(0.39)FRGGMGS(0.053)GGLAT(0.001)GIAGGLAGMGGIQNEKETMQSLNDR 52.62 0.00019071 15225000 581.82 753.37 1260 952.4 532.58 648.85 516.59 970.58 589.38 987.78 TRUE FALSE 589.9672751 835.6254843 941.8974165 891.3173268 605.1264127 763.9144372 614.6102557 888.1231708 645.9925824 786.4698938 0.750146038 1.062501554 1.197626793 1.133313982 0.76942095 0.971320636 0.781479699 1.129252598 0.821382468 1 9.61924773 -6.744207249 24.9991629 0.915031055 1.049349508 0.139034376 0.149271362 475.9889543 690528.4057 0.044127538 0.0568272 1.80E-07 6.744207249 0.134318453 S(ph)TSPPPS(ph)PEVWADSR ddPTM_K562_Paclitaxel_30min_R1 1 STSPPPSPEVWADSR 15 0 Q08495-3;Q08495-2;Q08495;E5RFK4;E5RGQ7;E5RJC0;E5RGQ0;E5RJ61 Q08495-3 DMTN Dematin 2 S(0.982)T(0.017)S(0.001)PPPS(1)PEVWADSR 184.92 5.12E-06 42760000 3277.7 3386.3 4230.8 3490 3140.2 2889.1 2924.6 3562 2840.5 4035.3 TRUE FALSE 3323.597913 3756.027686 3162.682214 3266.167021 3567.948404 3401.44132 3479.527583 3259.385867 3113.342717 3212.903645 1.034453031 1.169044609 0.984368834 1.016577956 1.110505884 1.058681397 1.082985351 1.014467356 0.969012165 1 11.649662 -8.452095564 4.055802649 0.985563019 1.065508901 0.31894248 0.048560857 0.270884745 8.483041034 0.030756637 0.012974883 3.53E-09 8.452095564 0.079945882 S(ph)TSPPPSPEVWADSR ddPTM_K562_Paclitaxel_30min_R1 1 STSPPPSPEVWADSR 15 0 Q08495-3;Q08495-2;Q08495;E5RFK4;E5RGQ7;E5RJC0;E5RGQ0;E5RJ61 Q08495-3 DMTN Dematin 1 S(0.737)T(0.156)S(0.107)PPPSPEVWADSR 111.66 0.0019104 230790000 2719.7 2943.4 2871.9 3126.9 2785.9 2725.6 2375.8 2873.7 2327.4 3229.5 TRUE FALSE 2757.784191 3264.770366 2146.853326 2926.354629 3165.386746 3208.946891 2826.595647 2629.561248 2550.957169 2571.326127 1.072514358 1.269683504 0.834920667 1.13807214 1.231032778 1.247973509 1.099275435 1.022647894 0.992078423 1 11.32829689 -8.241355904 3.551770462 1.001495612 1.13241858 0.19454072 0.116020297 0.423223667 11.47646295 0.067702335 0.033409484 5.74E-09 8.241355904 0.130922968 S(ph)TSPSTSSEAEPVKTVDSTPLSVHTPTLR ddPTM_K562_Paclitaxel_30min_R1 1 STSPSTSSEAEPVKTVDSTPLSVHTPTLR 29 1 Q5VT25-2;A0A0A0MRJ1;H0Y5V1;H0Y6V3 Q5VT25-2 CDC42BPA Serine/threonine-protein kinase MRCK alpha 1 S(0.198)T(0.198)S(0.198)PS(0.101)T(0.101)S(0.101)S(0.101)EAEPVKT(0.001)VDSTPLSVHTPTLR 82.479 1.91E-06 26152000 488.95 458.12 859.73 696.93 496.25 326.62 535.94 749.19 810.35 777.75 TRUE FALSE 495.7968085 508.1390909 642.6805285 652.2320291 563.8476516 384.541471 637.6318172 685.5416332 888.1877382 619.2441231 0.800648387 0.820579594 1.037846795 1.053271246 0.910541789 0.620985257 1.029693773 1.107061993 1.434309516 1 9.274364461 -8.219937784 2.924978567 1.217726267 0.887301851 0.430742204 0.155615978 0.254643133 4.314071296 0.09322611 0.044641963 6.03E-09 8.219937784 -0.330424416 S(ph)TSRDRLDDIIVLTK ddPTM_K562_Paclitaxel_30min_R1 1 STSRDRLDDIIVLTK 15 2 G5E9N8;Q7Z3D4-2;Q7Z3D4-3;Q7Z3D4 G5E9N8 LYSMD3 LysM and putative peptidoglycan-binding domain-containing protein 3 1 S(0.333)T(0.333)S(0.333)RDRLDDIIVLTK 63.727 0.027978 11835000 5914.5 5006.2 10324 6837.9 5606.4 4347.2 4723.5 6633.7 4854.4 7811.2 TRUE FALSE 5997.321248 5552.793846 7717.578514 6399.347699 6370.086597 5118.114882 5619.759467 6070.125779 5320.68681 6219.273152 0.964312244 0.892836463 1.240913259 1.028954275 1.024249368 0.822944218 0.903603899 0.97601852 0.855515858 1 12.60253027 -7.135077981 7.758244224 0.909814887 1.035434369 0.279176737 0.095251213 0.37943901 22.23807235 0.032297692 0.032334021 7.33E-08 7.135077981 0.125619482 S(ph)TSSHGTDEMESSSYR ddPTM_K562_Paclitaxel_30min_R1 1 STSSHGTDEMESSSYR 16 0 Q5JRC6;A0A0D9SGE8;Q8IWS0-2;Q8IWS0-4;Q8IWS0-3;Q8IWS0-5;Q8IWS0 Q5JRC6;Q8IWS0-5 PHF6 PHD finger protein 6 1 S(0.446)T(0.446)S(0.088)S(0.008)HGT(0.012)DEMESSSYR 87.668 0.013885 0 536.7 498.88 736.86 696.07 358.19 571.16 556.75 673.64 370.72 734.33 TRUE FALSE 544.2154559 553.3494055 550.8305796 651.4271857 406.9815422 672.4472065 662.3904061 616.4100773 406.3293124 584.6731429 0.930802898 0.946425216 0.942117124 1.114173267 0.696083867 1.150125014 1.132924291 1.054281499 0.694968321 1 9.191486512 S(ph)TTSQVTPAEEKDGHSPMSK ddPTM_K562_Paclitaxel_30min_R1 1 STTSQVTPAEEKDGHSPMSK 20 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 S(0.945)T(0.051)T(0.004)SQVTPAEEKDGHSPMSK 79.177 0.0033625 12347000 817.22 501.34 1584.7 748.41 710.02 423.27 569.18 840.93 956.36 1356.5 TRUE FALSE 828.6636013 556.0779966 1184.622886 700.4103324 806.7367447 498.3309915 677.1789337 769.4877476 1048.222651 1080.044555 0.767249459 0.514865793 1.096827793 0.648501332 0.746947652 0.46139855 0.626991665 0.712459263 0.970536489 1 10.07687511 -8.767346031 4.725500752 0.996944738 0.692671316 0.33680413 0.162250387 0.214199556 11.8774585 0.142092486 0.041680601 1.71E-09 8.767346031 -0.304273422 S(ph)TY(ph)VT(ph)EVRELK ddPTM_K562_Paclitaxel_30min_R1 1 STYVTEVRELK 11 1 Q86UP2-2;Q86UP2-3;Q86UP2-4;Q86UP2;H0YJP2;B7Z6P3;G3V4Y7 Q86UP2-2 KTN1 Kinectin 3 S(0.742)T(0.431)Y(0.828)VT(1)EVRELK 85.924 0.019629 54151000 0 0 0 0 0 0 131.92 0 0 0 TRUE FALSE 0 0 0 0 0 0 156.9511313 0 0 0 0 S(ph)VAVSDEEEVEEEAER ddPTM_K562_Paclitaxel_30min_R1 2 SVAVSDEEEVEEEAER 16 0 Q9Y6X9-2;Q9Y6X9 Q9Y6X9-2 MORC2 MORC family CW-type zinc finger protein 2 1 S(0.966)VAVS(0.034)DEEEVEEEAER;S(0.953)VAVS(0.047)DEEEVEEEAER 301.48 2.22E-178 92547000 4863.2 4995.4 6321.2 5117.2 4953.8 4484.32 4199.74 5079.5 3904.2 4987.6 TRUE FALSE 4931.299804 5540.814665 4725.33488 4789.005696 5628.591429 5279.551189 4996.618741 4647.96477 4279.215854 3971.124382 1.241789309 1.395276031 1.189923665 1.205957113 1.417379786 1.329485224 1.258237784 1.17044049 1.077582932 1 11.95533183 -8.620366203 1.518009399 1.00683208 1.297337332 0.684656408 0.069936458 0.232001694 0.981313633 0.067011093 0.021247321 2.40E-09 8.620366203 0.290505252 S(ph)VDFDSLTVR ddPTM_K562_Paclitaxel_30min_R1 3 SVDFDSLTVR 10 0 Q9Y5K6 Q9Y5K6 CD2AP CD2-associated protein 1 S(1)VDFDSLTVR;S(1)VDFDSLTVR;S(1)VDFDSLTVR 151.98 0.00025473 38663100 5513.1 5084.6 7308.1 6411 5785.3 5577.8 5110.1 5963.5 4211.5 6217.3 TRUE FALSE 5590.300409 5639.753823 5463.07977 5999.827155 6573.355806 6566.944514 6079.714798 5456.863452 4616.033392 4950.210847 1.129305515 1.139295678 1.10360547 1.212034667 1.327894106 1.32659895 1.228172897 1.102349702 0.932492279 1 12.27327426 -8.540694393 3.380023042 0.968698786 1.210984341 0.63639099 0.073250964 0.17792517 4.181170286 0.064568576 0.022811073 2.88E-09 8.540694393 0.242285555 S(ph)VEDDAEGHLIYHVGDWLQER ddPTM_K562_Paclitaxel_30min_R1 1 SVEDDAEGHLIYHVGDWLQER 21 0 B1AVT0;P49760-3;P49760 B1AVT0 CLK2 Dual specificity protein kinase CLK2 1 S(1)VEDDAEGHLIYHVGDWLQER 108.94 8.34E-05 4427500 802.01 392.1 728.99 538.78 532.78 616.16 552.75 785.99 588.02 819.67 TRUE FALSE 813.2406144 434.910804 544.9474585 504.2250623 605.353656 725.4273247 657.631427 719.2152435 644.5019483 652.6208041 1.246115063 0.666406589 0.835013924 0.772615674 0.927573335 1.11156022 1.007677694 1.102041552 0.987559612 1 9.350101168 -7.051248879 5.59014152 1.044618197 0.859917346 0.216839836 0.144686468 0.281237187 20.15259761 0.045969221 0.046934861 8.89E-08 7.051248879 -0.184700852 S(ph)VEDVRPHHTDANNQSACFEAPDQK ddPTM_K562_Paclitaxel_30min_R1 2 SVEDVRPHHTDANNQSACFEAPDQK 25 1 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;Q9Y520-3 E7EPN9 PRRC2C Protein PRRC2C 1 S(0.981)VEDVRPHHT(0.014)DANNQS(0.006)ACFEAPDQK;S(0.934)VEDVRPHHT(0.063)DANNQS(0.002)ACFEAPDQK 67.095 0.0016806 221773000 7682.6 5233.9 12751 7742.7 5947.3 4772.2 5079.8 7228.8 6355.2 9639.8 TRUE FALSE 7790.180103 5805.354902 9531.852348 7246.117877 6757.422949 5618.482665 6043.665532 6614.668319 6965.645356 7675.203469 1.014980272 0.756377981 1.241902236 0.944094565 0.880422646 0.732030452 0.787427403 0.861823188 0.907551882 1 12.90598928 -6.741105347 3.805675229 0.842499325 0.994469481 0.192442837 0.128310927 0.340423569 10.62982675 0.039805374 0.049762306 1.82E-07 6.741105347 0.151970155 S(ph)VELDLNQAHMEETPK ddPTM_K562_Paclitaxel_30min_R1 1 SVELDLNQAHMEETPK 16 0 Q14680-3;Q14680-4;Q14680-5;Q14680-2;Q14680-8;Q14680-7;Q14680-6;Q14680 Q14680-3 MELK Maternal embryonic leucine zipper kinase 1 S(1)VELDLNQAHMEETPK 78.69 0.018265 10251000 1130 838.93 1433.7 782.49 848.78 924.3 498.29 867.35 744.78 1085.8 TRUE FALSE 1145.823486 930.5272145 1071.744703 732.3045937 964.398206 1088.211627 592.8379263 793.6632037 816.3194468 864.513364 1.325397078 1.076359549 1.239708659 0.847071456 1.115538806 1.258756281 0.685747556 0.918046194 0.944253126 1 9.755744456 -2.000000224 0.316995842 0.916477579 4.569802395 0.335170371 0.155682901 66.86754876 0.955428481 0.150981637 141.1659734 0.009999995 2.000000224 3.653324815 S(ph)VELMS(ph)VY(ph)QY(ph)PEK ddPTM_K562_Paclitaxel_30min_R1 1 SVELMSVYQYPEK 13 0 G5E9V4;Q969F9-2;Q969F9 G5E9V4 HPS3 Hermansky-Pudlak syndrome 3 protein 4 S(1)VELMS(1)VY(1)QY(1)PEK 42.802 0.029519 11472000 671.43 645.44 1401.4 675.66 670.61 511.88 458.21 869.74 682.32 894.71 TRUE FALSE 680.8320915 715.9113219 1047.599238 632.3261917 761.9584355 602.6547308 545.1529555 795.8501583 747.8598847 712.3676109 0.955731396 1.004974554 1.470587968 0.887640289 1.069614092 0.845988394 0.765269149 1.117190263 1.049822975 1 9.476478113 S(ph)VENLPECGITHEQR ddPTM_K562_Paclitaxel_30min_R1 4 SVENLPECGITHEQR 15 0 F8W860;A0A0B4J1S8;Q9UBF8-3;Q9UBF8-2;Q9UBF8 F8W860 PI4KB Phosphatidylinositol 4-kinase beta 1 S(1)VENLPECGITHEQR;S(1)VENLPECGITHEQR;S(1)VENLPECGITHEQR;S(1)VENLPECGITHEQR 197.6 2.05E-09 775940000 14207.6 12218.5 16803.4 14896.3 12617.9 12300.8 11625.9 13585.3 12124.3 16086.4 TRUE FALSE 14406.55023 13552.55715 12561.17385 13940.91799 14336.6716 14482.17417 13831.85383 12431.14397 13288.89319 12807.98285 1.124810238 1.058133612 0.980730065 1.088455392 1.119354372 1.130714675 1.079940065 0.970577812 1.037547703 1 13.64475566 -8.243220563 22.22238112 1.003047086 1.081684771 0.420230837 0.04328044 202.6793675 247218.6854 0.02237332 0.012866703 5.71E-09 8.243220563 0.078637684 S(ph)VEPQDAGPLER ddPTM_K562_Paclitaxel_30min_R1 1 SVEPQDAGPLER 12 0 A0A0A0MRN5;Q9NZT2-2;Q9NZT2 A0A0A0MRN5 OGFR Opioid growth factor receptor 1 S(1)VEPQDAGPLER 108.06 0.0066594 11946000 550.04 543.36 781.02 778.34 674.13 622.87 580 692.33 829.17 828.28 TRUE FALSE 557.742257 602.6858823 583.8418415 728.4207561 765.9579191 733.327249 690.0519722 633.5122451 908.8154833 659.4760813 0.845735384 0.913885885 0.885311625 1.104544618 1.161464291 1.111984604 1.046363912 0.960629601 1.378087104 1 9.365176525 -6.262385067 8.18966913 1.10720809 0.884554824 0.484650814 0.107420594 0.096395806 77.7965124 0.028850995 0.046155602 5.47E-07 6.262385067 -0.222653266 S(ph)VGEGTINGLLGELLET(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SVGEGTINGLLGELLETR 18 0 Q5XLA6 Q5XLA6 CARD17 Caspase recruitment domain-containing protein 17 2 S(0.556)VGEGT(0.444)INGLLGELLET(1)R 96.391 0.0027327 39623000 424.5 406.86 568.63 375.12 430.47 483.45 528.15 383.85 390.74 482.52 TRUE FALSE 430.4443097 451.2823507 425.0723238 351.0614822 489.1073019 569.1830695 628.3637054 351.2395466 428.2723229 384.1821591 1.120417228 1.17465723 1.106434314 0.913789133 1.273113002 1.481544772 1.635587938 0.914252623 1.114763694 1 8.585646714 -6.820167231 24.99923406 1.264459079 1.087640666 0.110787186 0.209559881 167.0940338 71127.07816 0.069771409 0.079113377 1.51E-07 6.820167231 -0.176818413 S(ph)VPSIAAATGTHSR ddPTM_K562_Paclitaxel_30min_R1 2 SVPSIAAATGTHSR 14 0 Q8IY63-2;Q8IY63 Q8IY63-2 AMOTL1 Angiomotin-like protein 1 1 S(1)VPSIAAATGTHSR;S(0.613)VPS(0.387)IAAATGTHSR 130.47 2.16E-05 7519700 2490.46 2219.09 2637.41 2488.84 2600.46 2457.78 2043.4 2802.27 2434.15 3012.6 TRUE FALSE 2525.334124 2461.377751 1971.563226 2329.216942 2954.686678 2893.632774 2431.124483 2564.199672 2667.960984 2398.630466 1.052823334 1.02615963 0.821953717 0.971061185 1.231822375 1.206368724 1.013546904 1.069026558 1.112285123 1 11.2279952 -6.632775594 10.3261238 1.109296172 0.960254988 0.363091176 0.089008855 0.360070219 31.63309513 0.027783273 0.035869019 2.33E-07 6.632775594 -0.149041184 S(ph)VQEGENPDDGVR ddPTM_K562_Paclitaxel_30min_R1 1 SVQEGENPDDGVR 13 0 H7C5M1;Q5TCT4;A2A2V2;P42696-2;P42696 H7C5M1 RBM34 RNA-binding protein 34 1 S(1)VQEGENPDDGVR 137.91 5.82E-05 26286000 325.04 362.43 486.46 459.85 287.65 195.17 291.89 341.67 128.68 491.33 TRUE FALSE 329.5915628 402.0013331 363.6471565 430.3572792 326.8328 229.7806592 347.2746037 312.6430009 141.040289 391.1966763 0.842521378 1.0276195 0.929576294 1.100104641 0.835469266 0.587378864 0.887723809 0.799196465 0.360535499 1 8.611750303 -6.99111617 10.52767211 0.722984198 0.974643702 0.314665978 0.172475584 0.269920299 291.9687019 0.052150704 0.0580786 1.02E-07 6.99111617 0.251659504 S(ph)VS(ph)PCSNVESR ddPTM_K562_Paclitaxel_30min_R1 1 SVSPCSNVESR 11 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(1)VS(0.976)PCS(0.024)NVESR 113.37 0.028521 428430000 5086.8 5120.1 7365.8 6290.7 5036.8 4723.6 4293.4 5805.1 4568.6 6810 TRUE FALSE 5158.030894 5679.129833 5506.212691 5887.242658 5722.897434 5561.264137 5108.050237 5311.920521 5007.434443 5422.118262 0.951294429 1.047400584 1.015509516 1.085782783 1.055472632 1.025662641 0.942076508 0.979676256 0.92351996 1 12.40464086 -7.702214203 6.425654024 0.95972201 1.034496298 0.442769777 0.03769663 0.180936484 14.75493555 0.014532998 0.011102121 1.99E-08 7.702214203 0.074774288 S(ph)VSGS(ph)PEPAAK ddPTM_K562_Paclitaxel_30min_R1 2 SVSGSPEPAAK 11 0 A9Z1X7;Q8IYB3-2;Q8IYB3;E9PCT1 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 2 S(0.975)VS(0.028)GS(0.997)PEPAAK;S(0.534)VS(0.467)GS(0.999)PEPAAK 107.17 0.00015579 0 6462.2 6099.6 12429.7 8565.5 5982.4 5455.1 4953.3 8052.8 5714.8 10191.1 TRUE FALSE 6552.690738 6765.574956 9291.668506 8016.147168 6797.304163 6422.485392 5893.162817 7368.664376 6263.732074 8114.148226 0.807563598 0.833799774 1.145119395 0.9879222 0.83771013 0.791516893 0.726282372 0.908125434 0.771951892 1 12.98622394 -6.814872726 7.628926679 0.826099209 0.950018525 0.166994104 0.111564828 0.37993946 46.20192824 0.035824677 0.040894151 1.53E-07 6.814872726 0.123919316 S(ph)VSPCSNVESR ddPTM_K562_Paclitaxel_30min_R1 1 SVSPCSNVESR 11 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.868)VS(0.132)PCSNVESR 166.45 2.92E-50 0 1921.2 1721.9 1829.6 1910.4 1710 1998.6 1697.5 2013.9 1556.1 2272 TRUE FALSE 1948.102727 1909.902865 1367.694852 1787.875495 1942.930951 2353.023648 2019.591763 1842.806625 1705.570358 1808.965153 1.076915564 1.055798594 0.756064786 0.98834159 1.074056594 1.300756758 1.116434863 1.018707642 0.942843125 1 10.8209489 -5.5313138 24.99612867 1.030059267 1.071636523 0.016057237 0.129674177 1200.784599 3558372.463 0.03703642 0.098356986 2.94E-06 5.5313138 0.041577256 S(ph)VSPLVWCR ddPTM_K562_Paclitaxel_30min_R1 1 SVSPLVWCR 9 0 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 S(0.917)VS(0.083)PLVWCR 125.68 0.0015603 30599000 1693.3 1881.9 2175.3 1705.1 1824.3 1545.4 1844.8 1727.6 1752 2144.5 TRUE FALSE 1717.011424 2087.372206 1626.118611 1595.742518 2072.800546 1819.454992 2194.841169 1580.829597 1920.287428 1707.449723 1.00559999 1.222508738 0.952366907 0.934576577 1.213974571 1.065597989 1.285449955 0.925842545 1.1246524 1 10.73762738 -4.969677078 18.36753093 1.081789053 0.730909472 0.0324628 0.122589799 5250.519858 47735.77621 0.028851514 61913.31023 1.07E-05 4.969677078 -0.350879581 S(ph)VSSFPVPQDNVDTHPGSGK ddPTM_K562_Paclitaxel_30min_R1 1 SVSSFPVPQDNVDTHPGSGK 20 0 C9JAY7;E7EVC7;Q676U5-4;Q676U5-5;Q676U5-3;Q676U5-2;Q676U5 C9JAY7 ATG16L1 Autophagy-related protein 16-1 1 S(0.86)VS(0.07)S(0.07)FPVPQDNVDTHPGSGK 89.622 0.00075576 19641000 1423.5 724.43 1618.6 909.76 1044 1100.3 1130 1517.8 1338.6 1835.8 TRUE FALSE 1443.433392 803.5257173 1209.964411 851.4120655 1186.210475 1295.422756 1344.411601 1388.853416 1467.178511 1461.662952 0.987528205 0.549733929 0.827799877 0.582495482 0.811548567 0.886266395 0.919782224 0.950187192 1.003773482 1 10.51339496 -7.39841738 1.698104948 0.970149438 0.72921378 0.439744833 0.117143729 0.32724153 1.877808464 0.049867089 0.041043392 4.00E-08 7.39841738 -0.240935658 S(ph)VSTTNIAGHFNDESPLGLR ddPTM_K562_Paclitaxel_30min_R1 1 SVSTTNIAGHFNDESPLGLR 20 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 S(0.749)VS(0.075)T(0.047)T(0.128)NIAGHFNDESPLGLR 288.3 1.49E-161 68521000 1202.5 1007.7 1263 689.69 522.34 437.9 503.98 491.55 385.45 490.17 TRUE FALSE 1219.33871 1117.724094 944.1400294 645.4563703 593.4915513 515.5554166 599.607574 449.7897593 422.4741947 390.2730849 3.124321807 2.863953823 2.419177919 1.653858273 1.520708381 1.321011969 1.536379518 1.152500074 1.082509174 1 8.608340161 -6.002316975 0.798200948 1.19027581 3.483213005 0.965894847 0.133567252 0.187124455 0.177692 0.060647744 0.319243016 9.95E-07 6.002316975 2.292937195 up S(ph)VSTTNIAGHFNDESPLGLRR ddPTM_K562_Paclitaxel_30min_R1 2 SVSTTNIAGHFNDESPLGLRR 21 1 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 S(0.25)VS(0.25)T(0.25)T(0.25)NIAGHFNDESPLGLRR;S(0.671)VS(0.189)T(0.107)T(0.033)NIAGHFNDESPLGLRR 86.825 0.00043713 55770000 4534.2 3226.2 3375 2765.02 2347.5 1926.46 1979.97 1850.13 1995.81 1803.7 TRUE FALSE 4597.692789 3578.447426 2522.939509 2587.683993 2667.269244 2268.090632 2355.658971 1692.949908 2187.516468 1436.10495 3.201501944 2.491772921 1.756793268 1.801876662 1.857294095 1.579334875 1.640311157 1.178848321 1.523228834 1 10.48794547 -2 0.394713473 1.323493348 30.76738196 0.895421414 0.194689187 21.33965404 0.285927524 0.144393376 486.4473213 0.01 2 29.44388861 up S(ph)VVSFDK ddPTM_K562_Paclitaxel_30min_R1 1 SVVSFDK 7 0 Q15424-2;Q15424;Q15424-3;Q15424-4 Q15424-2 SAFB Scaffold attachment factor B1 1 S(0.589)VVS(0.411)FDK 101.25 0.0097441 22873000 2911.2 2513.8 5178.7 3372.4 2574.4 2144 2073.3 2834.9 1906.8 3770.6 TRUE FALSE 2951.965782 2788.265185 3871.273136 3156.109358 2925.076865 2524.208297 2466.697852 2594.05755 2089.95666 3002.14965 0.983284022 0.928756228 1.289500387 1.051283156 0.974327467 0.84080029 0.821643868 0.864066703 0.696153391 1 11.55178018 -7.074591229 2.510007967 0.832952738 1.068828887 0.462427821 0.111228178 0.259368314 3.223121296 0.04037209 0.042000736 8.42E-08 7.074591229 0.235876149 S(ph)WAFSY(ph)LDAMDNIT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SWAFSYLDAMDNITR 15 0 B7Z4B8 B7Z4B8 HNRNPUL1 3 S(0.998)WAFS(0.287)Y(0.715)LDAMDNIT(1)R 45.342 0.029654 388960000 2259.5 2164.7 2548 2880.2 2210.8 2487.3 2273.3 2829.8 2338.3 2570.3 TRUE FALSE 2291.139971 2401.049267 1904.725887 2695.476863 2511.948389 2928.387732 2704.646808 2589.390827 2562.904163 2046.471449 1.119556284 1.173263017 0.930736604 1.317133872 1.227453425 1.430944826 1.321614728 1.265295359 1.252352758 1 10.99892282 -6.28518796 24.95780457 1.278737229 1.084393049 0.328574036 0.118501426 771.5811144 810866.1986 0.032029813 0.0475361 5.19E-07 6.28518796 -0.19434418 S(ph)WHDVQVSSAYVK ddPTM_K562_Paclitaxel_30min_R1 4 SWHDVQVSSAYVK 13 0 O43399-5;O43399-7;A0A087WYR3;O43399 O43399-5 TPD52L2 Tumor protein D54 1 S(1)WHDVQVSSAYVK;S(1)WHDVQVSSAYVK;S(1)WHDVQVSSAYVK;S(1)WHDVQVSSAYVK 211.51 1.43E-11 63279400 5072.56 4538.8 8075.8 5731.6 4562.51 3601.96 4190.33 5954.1 4862.81 6177.6 TRUE FALSE 5143.59149 5034.361533 6036.96441 5364.00083 5184.001106 4240.717032 4985.423243 5448.262041 5329.904628 4918.601729 1.045742626 1.023535104 1.227374108 1.090554008 1.053958298 0.862179389 1.013585469 1.107685139 1.083621916 1 12.26403253 -6.900646424 4.58682649 1.014371871 1.100191361 0.195125532 0.078925677 0.385526025 14.07173518 0.027152779 0.031027572 1.26E-07 6.900646424 0.085819491 S(ph)Y(ph)KDDS(ph)S(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SYKDDSSR 8 1 H0YF14 H0YF14 BCLAF1 4 S(1)Y(1)KDDS(1)S(1)R 70.488 0.020774 2945000 109.67 171.01 114.56 144.85 152.39 150.19 84.537 203.11 0 156.77 TRUE FALSE 111.2057184 189.6814501 85.63791114 135.5599693 173.148098 176.8240877 100.5774544 185.8545377 0 124.8201879 0.890927343 1.519637594 0.686090227 1.086042022 1.387180238 1.41663052 0.805778745 1.488978192 0 1 6.963707479 -8.752303207 24.99999708 0.499999868 1.158171788 0.352105387 0.358190113 176.1428125 482002.0864 0.232831909 0.085247436 1.77E-09 8.752303207 0.658171919 S(ph)Y(ph)PS(ph)LKPLGSY(ph)VNDFLAR ddPTM_K562_Paclitaxel_30min_R1 1 SYPSLKPLGSYVNDFLAR 18 1 Q8WXX0;Q8WXX0-2 Q8WXX0 DNAH7 "Dynein heavy chain 7, axonemal" 4 S(0.999)Y(0.997)PS(0.988)LKPLGS(0.063)Y(0.952)VNDFLAR 43.454 0.031013 18967000 0 0 178.8 0 0 152.68 135.84 156.04 0 131.34 TRUE FALSE 0 0 133.6597286 0 0 179.7556543 161.6149309 142.783428 0 104.5728359 0 0 1.278149602 0 0 1.718951702 1.545477174 1.36539692 0 1 6.708364332 -7.250995117 24.9839213 1.175021979 0.284033231 0.370397752 0.564943878 803.1177983 1921155.028 0.19326987 0.191270033 5.61E-08 7.250995117 -0.890988748 S(ph)YDNLTTACDNTVPLASR ddPTM_K562_Paclitaxel_30min_R1 2 SYDNLTTACDNTVPLASR 18 0 G5E953;Q13615-3;Q13615-2;Q13615 G5E953 MTMR3 Myotubularin-related protein 3 1 S(0.937)Y(0.002)DNLT(0.047)T(0.014)ACDNTVPLASR;S(0.999)Y(0.001)DNLTTACDNTVPLASR 146.28 3.18E-10 47047000 906.02 1185.92 1583.55 1310.02 1019.45 1039.72 1117.14 1488.2 891.3 1326.03 TRUE FALSE 918.7070753 1315.402756 1183.763217 1226.001181 1158.316349 1224.099744 1329.111483 1361.768121 976.9133474 1055.784358 0.870165454 1.24590097 1.121216855 1.161223096 1.09711452 1.159422125 1.258885371 1.289816534 0.925296288 1 10.04409948 -5.249082728 24.34527362 1.152009554 0.870165201 0.352477137 0.108552344 1448.694384 2854169.323 0.025842213 0.429875751 5.64E-06 5.249082728 -0.281844353 S(ph)YDSSMESR ddPTM_K562_Paclitaxel_30min_R1 2 SYDSSMESR 9 0 Q9HCG8;B7WP74 Q9HCG8 CWC22 Pre-mRNA-splicing factor CWC22 homolog 1 S(0.857)YDS(0.072)S(0.072)MESR;S(0.962)YDS(0.031)S(0.007)MESR 121.29 0.002512 113129000 1492.29 1696.39 2178.46 2064.18 1584.56 1318.01 1117.96 1922.91 1525.75 2015.56 TRUE FALSE 1513.186664 1881.607597 1628.48083 1931.792734 1800.403899 1551.740568 1330.087074 1759.546793 1672.305105 1604.787766 0.942920115 1.172496225 1.014763986 1.203768358 1.121895329 0.966944415 0.828824286 1.096435822 1.042072441 1 10.6481668 -7.263928356 24.78911991 0.983005684 1.097697813 0.23232393 0.094307685 288.349291 2871819.594 0.032744864 0.030208776 5.45E-08 7.263928356 0.114692129 S(ph)YLLIACTT(ph)PY(ph)MIFFGHGYAR ddPTM_K562_Paclitaxel_30min_R1 1 SYLLIACTTPYMIFFGHGYAR 21 0 Q6ZVT0-3;Q6ZVT0-2;Q6ZVT0 Q6ZVT0-3 TTLL10 Inactive polyglycylase TTLL10 3 S(0.797)Y(0.206)LLIACT(0.257)T(0.744)PY(0.991)MIFFGHGY(0.005)AR 48.771 0.02778 52130000 1750.2 2324.1 2138.7 2237.2 1971.2 2402.1 2406.3 2390.2 1931.1 2857 TRUE FALSE 1774.7082 2577.853098 1598.758734 2093.716005 2239.710813 2828.078708 2862.882863 2187.137591 2116.590783 2274.741832 0.780180052 1.133250843 0.702830849 0.920419177 0.984600002 1.243252605 1.258552871 0.961488271 0.930475166 1 11.1514871 -6.941596379 3.842824835 1.08999353 0.890354043 0.28144804 0.144992722 0.307176901 9.312991684 0.048601259 0.054725182 1.14E-07 6.941596379 -0.199639487 SAAEMYGSSFDLDYDFQRDYYDR ddPTM_K562_Paclitaxel_30min_R1 2 SAAEMYGSSFDLDYDFQRDYYDR 23 1 G3V2D6;G3V4C1;P07910-4;P07910-2;G3V4W0;B4DY08;B2R5W2;G3V251 G3V2D6 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 0 ; 203.17 8.30E-27 97024000 1905.84 1727.44 1894.44 1923.13 1318.77 1661.13 2107.91 2095.57 2530 2338.67 FALSE TRUE 1932.52764 1916.047741 1416.165192 1799.789049 1498.408801 1955.708082 2507.874918 1917.538248 2773.017804 1862.04777 1.037850731 1.029000314 0.760541816 0.96656438 0.804710182 1.050299629 1.346837046 1.029800781 1.489230217 1 10.86267437 -7.540106778 6.499854361 1.217641765 0.919909988 0.449133718 0.154874402 0.140023208 23.84208531 0.055520944 0.043902612 2.88E-08 7.540106778 -0.297731777 SAAEMYGSVTEHPSPS(ph)PLLSSSFDLDYDFQR ddPTM_K562_Paclitaxel_30min_R1 5 SAAEMYGSVTEHPSPSPLLSSSFDLDYDFQR 31 0 G3V2Q1;P07910;G3V555;G3V575;G3V576 G3V2Q1 HNRNPC Heterogeneous nuclear ribonucleoproteins C1/C2 1 SAAEMYGS(0.001)VT(0.001)EHPS(0.167)PS(0.69)PLLS(0.038)S(0.046)S(0.057)FDLDY(0.001)DFQR;SAAEMYGSVTEHPS(0.1)PS(0.895)PLLS(0.003)S(0.001)SFDLDYDFQR;SAAEMYGSVTEHPS(0.019)PS(0.979)PLLS(0.002)S(0.001)SFDLDYDFQR;SAAEMYGSVTEHPS(0.001)PS(0.971)PLLS(0.016)S(0.005)S(0.007)FDLDYDFQR;SAAEMYGSVTEHPS(0.022)PS(0.973)PLLS(0.004)S(0.001)SFDLDYDFQR 127.14 7.78E-21 140796000 2834.89 3251.09 3306.95 2788.83 2473.24 2556.95 3282.25 3945.12 2251.92 5178.49 TRUE FALSE 2874.587206 3606.055001 2472.069573 2609.966926 2810.13716 3010.389181 3905.039803 3609.957431 2468.226978 4123.110895 0.697188914 0.874595686 0.599564173 0.633009151 0.681557501 0.730125688 0.947110059 0.875542163 0.598632208 1 12.00951755 -7.588314051 8.621034458 0.844706177 0.698808278 0.284837412 0.11895159 0.419849569 50.23709286 0.045792512 0.035428744 2.58E-08 7.588314051 -0.1458979 SAAPLIICPMSGIDGFSGHVGNHGHSMETS(ph)P ddPTM_K562_Paclitaxel_30min_R1 1 SAAPLIICPMSGIDGFSGHVGNHGHSMETSP 31 0 A0A140T9B9;A0A140T9N6;A0A140T9V9;H0Y551;P14373 A0A140T9B9 TRIM27 Zinc finger protein RFP 1 SAAPLIICPMS(0.059)GIDGFS(0.016)GHVGNHGHS(0.129)MET(0.379)S(0.417)P 42.885 0.024208 30540000 1226.8 1306.5 1567.8 1541 1162 1360.9 1255.8 1522.3 1779.5 1742.2 TRUE FALSE 1243.978985 1449.148088 1171.9895 1442.167157 1320.284073 1602.236507 1494.081494 1392.971113 1950.428926 1387.138684 0.896794963 1.044703104 0.844897135 1.039670492 0.951803946 1.155065839 1.077095976 1.004204648 1.406080696 1 10.43789632 -7.196864033 1.137673545 1.139173229 0.942562958 0.322815438 0.12145832 0.586354763 1.579580207 0.059135973 0.056619896 6.36E-08 7.196864033 -0.19661027 SAAQAAAQTNS(ph)NAAGK ddPTM_K562_Paclitaxel_30min_R1 1 SAAQAAAQTNSNAAGK 16 0 Q8NC51-4;Q8NC51-3;Q8NC51-2;Q8NC51 Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 SAAQAAAQT(0.012)NS(0.988)NAAGK 219.99 8.64E-163 0 652.48 636.05 1350.1 699.41 720.14 609.74 511.39 833.16 732.44 910.16 TRUE FALSE 661.6167331 705.49609 1009.250557 654.552973 818.2352601 717.8688278 608.4235829 762.3778576 802.7941346 724.6688924 0.912991768 0.973542672 1.392705783 0.903244199 1.129116026 0.990616315 0.839588382 1.052036131 1.107808191 1 9.501178155 -7.307370157 21.49430314 0.991360531 1.066905222 0.045603939 0.144761393 295.2523648 138166.9826 0.051826492 0.045707343 4.93E-08 7.307370157 0.07554469 SAAS(ph)PVVSSMPER ddPTM_K562_Paclitaxel_30min_R1 2 SAASPVVSSMPER 13 0 P18583-6;P18583-2;P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;H7C1M2 P18583-6 SON Protein SON 1 S(0.396)AAS(0.604)PVVSSMPER;S(0.063)AAS(0.937)PVVSSMPER 203.32 1.02E-07 274039000 3232.3 3253.4 4385 3997.5 3572.6 3583.3 2716.2 3903.1 2713.4 4265.7 TRUE FALSE 3277.562172 3608.617214 3277.952517 3741.118242 4059.248605 4218.747943 3231.58477 3571.507293 2974.034194 3396.347999 0.965025426 1.062499254 0.965140356 1.101512049 1.195180413 1.242142426 0.95148812 1.051572835 0.875656498 1 11.72976857 SAAVETASLS(ph)PSLVPAR ddPTM_K562_Paclitaxel_30min_R1 1 SAAVETASLSPSLVPAR 17 0 Q2KHT3;Q2KHT3-3 Q2KHT3 CLEC16A Protein CLEC16A 1 SAAVETAS(0.322)LS(0.664)PS(0.013)LVPAR 177.67 7.97E-10 17986000 2005.5 1999.7 2679.9 2148.5 1892.4 2016.8 2040.9 2643.5 1652 2773.8 TRUE FALSE 2033.583187 2218.034009 2003.3261 2010.704826 2150.176919 2374.451163 2428.150121 2418.918175 1810.681981 2208.498037 0.920799183 1.004317854 0.907098882 0.910439943 0.973592406 1.075142981 1.099457677 1.095277484 0.819870315 1 11.10884983 -7.030365215 6.612133727 1.028784217 0.938771573 0.188052368 0.079038484 0.307145833 46.22395177 0.026139323 0.026965162 9.32E-08 7.030365215 -0.090012643 SAES(ph)PSWTPAEHVAK ddPTM_K562_Paclitaxel_30min_R1 3 SAESPSWTPAEHVAK 15 0 Q13415 Q13415 ORC1 Origin recognition complex subunit 1 1 S(0.003)AES(0.995)PS(0.002)WTPAEHVAK;S(0.001)AES(0.848)PS(0.114)WT(0.037)PAEHVAK;S(0.222)AES(0.604)PS(0.174)WT(0.001)PAEHVAK 148.85 1.86E-05 77375000 7234.3 6119.2 12929.2 8500.3 6238.3 5928.2 5187.8 8327.9 6284.6 10210.5 TRUE FALSE 7335.60252 6787.31495 9665.063554 7955.128804 7088.062075 6979.483034 6172.157968 7620.392914 6888.26391 8129.594495 0.902333139 0.83488973 1.188874003 0.978539435 0.871883841 0.858527819 0.75922089 0.937364455 0.847307195 1 12.98896768 -6.761802687 7.522337672 0.868713781 0.981515515 0.172156751 0.102600988 0.207090166 76.52586305 0.031949186 0.038678816 1.73E-07 6.761802687 0.112801734 SAFSNLFGGEPLS(ph)YTR ddPTM_K562_Paclitaxel_30min_R1 1 SAFSNLFGGEPLSYTR 16 0 F8WBE5;P02786 F8WBE5 TFRC "Transferrin receptor protein 1;Transferrin receptor protein 1, serum form" 1 SAFS(0.001)NLFGGEPLS(0.938)YT(0.062)R 142.58 2.41E-08 9060300 1454.3 1085.7 1265.9 1096.8 986.13 905.74 1246.1 1183.7 1322.5 1732.2 TRUE FALSE 1474.664687 1204.240398 946.3078885 1026.456157 1120.457601 1066.360272 1482.54097 1083.137297 1449.532034 1379.176689 1.069235507 0.873158898 0.686139706 0.744252832 0.812410484 0.773186119 1.074946366 0.785350641 1.051012568 1 10.42959158 -7.742571343 24.99998439 0.959939992 0.817777831 0.269283764 0.120273337 359.7158009 476620.3309 0.046982771 0.036330175 1.81E-08 7.742571343 -0.142162161 SAFSNLFGGEPLSY(ph)TR ddPTM_K562_Paclitaxel_30min_R1 2 SAFSNLFGGEPLSYTR 16 0 F8WBE5;P02786 F8WBE5 TFRC "Transferrin receptor protein 1;Transferrin receptor protein 1, serum form" 1 SAFSNLFGGEPLS(0.012)Y(0.946)T(0.042)R;SAFSNLFGGEPLS(0.008)Y(0.951)T(0.041)R 258.39 3.99E-78 65077000 3725.4 2915.1 3282.6 3077.4 2848.6 2737.76 2889.2 3324.3 2825.2 3736.2 TRUE FALSE 3777.567094 3233.380476 2453.867031 2880.029338 3236.627547 3223.263296 3437.410617 3041.879965 3096.573083 2974.760389 1.269872729 1.086938124 0.824895693 0.968155065 1.088029664 1.083537117 1.155525208 1.022563019 1.040948741 1 11.53855775 -6.812660108 24.99577223 1.071671853 1.025814668 0.008315958 0.110871863 458.0114209 223506.8448 0.036967989 0.041917815 1.54E-07 6.812660108 -0.045857184 SAGAPASVSGQDADGSTS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 SAGAPASVSGQDADGSTSPR 20 0 K7EQY5;P42679-3;P42679;P42679-2 K7EQY5 MATK Non-specific protein-tyrosine kinase;Megakaryocyte-associated tyrosine-protein kinase 1 SAGAPASVS(0.038)GQDADGST(0.011)S(0.951)PR;SAGAPASVSGQDADGS(0.006)T(0.197)S(0.796)PR 245.63 1.46E-70 19108200 5274 5411.4 6596 6118.4 4968.1 4520.8 4899.6 5690.2 4392.4 6582.5 TRUE FALSE 5347.852272 6002.234952 4930.758222 5725.993209 5644.839331 5322.500405 5829.273522 5206.781993 4814.309646 5240.982887 1.020391096 1.145249867 0.940807923 1.092541863 1.077057386 1.015553861 1.11224815 0.993474336 0.91858908 1 12.35562168 -8.490742438 7.984324104 0.958024316 1.056841494 0.339756178 0.056908141 0.254813711 58.00485542 0.030444747 0.013990971 3.23E-09 8.490742438 0.098817178 SAGGSS(ph)PEGGEDS(ph)DREDGNYCPPVKR ddPTM_K562_Paclitaxel_30min_R1 1 SAGGSSPEGGEDSDREDGNYCPPVKR 26 2 B7Z7F3;Q9H6Z4-3;Q9H6Z4-2;Q9H6Z4;K7EID7;K7ENB9 B7Z7F3 RANBP3 Ran-binding protein 3 2 S(0.002)AGGS(0.217)S(0.785)PEGGEDS(0.958)DREDGNY(0.038)CPPVKR 72.564 0.00085397 34373000 2683.7 2525.5 4459 2873.7 2067.7 2042.3 1791.1 3068.7 2571.8 3208.9 TRUE FALSE 2721.28008 2801.242631 3333.270302 2689.393744 2349.355746 2404.47323 2130.951875 2807.994781 2818.832881 2554.924419 1.065111774 1.096409197 1.304645365 1.05263143 0.919540214 0.941113253 0.834056718 1.099051996 1.103294039 1 11.3190649 -6.517012943 23.89659192 0.978980074 1.15434876 0.397832853 0.094969543 151.6993019 618006.6329 0.029452504 0.039373196 3.04E-07 6.517012943 0.175368686 SAGGSSPEGGEDS(ph)DREDGNYCPPVKR ddPTM_K562_Paclitaxel_30min_R1 2 SAGGSSPEGGEDSDREDGNYCPPVKR 26 2 B7Z7F3;Q9H6Z4-3;Q9H6Z4-2;Q9H6Z4;K7EID7;K7ENB9 B7Z7F3 RANBP3 Ran-binding protein 3 1 SAGGS(0.001)S(0.001)PEGGEDS(0.668)DREDGNY(0.329)CPPVKR;SAGGS(0.002)S(0.002)PEGGEDS(0.996)DREDGNY(0.001)CPPVKR 78.976 0.00084755 116057000 2486.32 2228.26 4772.5 2793.37 2200.75 2012.08 2523.1 2718.6 2964.53 3238.73 TRUE FALSE 2521.136151 2471.548962 3567.623349 2614.215751 2500.529409 2368.894137 3001.845054 2487.637961 3249.286352 2578.675048 0.977686643 0.958456927 1.383510246 1.013782544 0.96969543 0.918647791 1.164103657 0.964696177 1.260060415 1 11.33241427 -11.58877741 3.214411822 0.996909984 1.064847419 0.018845017 0.145426261 13160833.42 23734314.56 231600.7595 0.034893862 2.58E-12 11.58877741 0.067937435 SALLTQNGTGS(ph)LPR ddPTM_K562_Paclitaxel_30min_R1 2 SALLTQNGTGSLPR 14 0 Q86UU1-3;Q86UU1-2;Q86UU1;A0A087WZL0 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 SALLTQNGT(0.001)GS(0.999)LPR;SALLTQNGT(0.008)GS(0.992)LPR 152.68 9.60E-05 121039000 2482.9 2253.1 3275.8 2667.1 2650.8 2683.8 2385.7 2939 2231.3 3555.2 TRUE FALSE 2517.66826 2499.101077 2448.783775 2496.044143 3011.883838 3159.734248 2838.374121 2689.313605 2445.626335 2830.648289 0.889431679 0.88287234 0.865096446 0.881792398 1.064026163 1.116258159 1.002729351 0.950069854 0.863980999 1 11.46691679 -6.740882001 24.04233671 1.00301253 0.878967561 0.467981852 0.062461366 153.6916808 179744.5957 0.020684155 0.026666359 1.82E-07 6.740882001 -0.124044969 SALPVSPSISSAPVPVEIENLPQS(ph)PGTDQHDRK ddPTM_K562_Paclitaxel_30min_R1 1 SALPVSPSISSAPVPVEIENLPQSPGTDQHDRK 33 1 Q9HCM4-4;Q9HCM4-3;Q9HCM4;Q9HCM4-2 Q9HCM4-4 EPB41L5 Band 4.1-like protein 5 1 SALPVSPSISSAPVPVEIENLPQS(0.903)PGT(0.097)DQHDRK 62.67 0.00018182 7805100 751.72 503.08 832.57 659.17 569.71 374.84 389.69 481.04 698.92 743.19 TRUE FALSE 762.2463993 558.0079757 622.3774064 616.8937865 647.3141473 441.312611 463.6316432 440.1726494 766.0543889 591.7274701 1.288171393 0.943015161 1.051797386 1.042530249 1.09393966 0.745803826 0.783522258 0.743877328 1.29460677 1 9.208789061 -7.232749292 24.35090244 0.889426861 1.071983606 0.189589321 0.17162526 836.1142968 709657.8228 0.055977404 0.055966439 5.85E-08 7.232749292 0.182556745 SALRAGNDSAMADGEGY(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SALRAGNDSAMADGEGYR 18 1 Q8WXI4-2;Q8WXI4 Q8WXI4-2 ACOT11 Acyl-coenzyme A thioesterase 11 1 SALRAGNDS(0.006)AMADGEGY(0.994)R 53.967 0.029789 0 0 0 120.87 111.97 0 0 0 0 0 0 TRUE FALSE 0 0 90.3548736 104.7887454 0 0 0 0 0 0 0 SAMDSPVPASMFAPEPS(ph)SPGAAR ddPTM_K562_Paclitaxel_30min_R1 1 SAMDSPVPASMFAPEPSSPGAAR 23 0 O00178;F8WAZ4 O00178 GTPBP1 GTP-binding protein 1 1 SAMDSPVPASMFAPEPS(0.5)S(0.5)PGAAR 156.8 1.74E-18 25835000 1853.7 1981.8 2356 1788.6 1819.7 1893.9 1894.4 2411.5 1933.1 2125.4 TRUE FALSE 1879.657519 2198.179626 1761.198661 1673.887201 2067.573948 2229.756573 2253.852511 2206.628023 2118.782892 1692.242313 1.110749627 1.298974508 1.040748507 0.989153378 1.221795444 1.317634334 1.331873392 1.303966935 1.252056443 1 10.72472045 -6.984783802 24.53977738 1.266214647 1.116846819 0.212101627 0.116084117 262.6675634 423611.4852 0.035872196 0.040659614 1.04E-07 6.984783802 -0.149367828 SAMDSPVPASMFAPEPSS(ph)PGAAR ddPTM_K562_Paclitaxel_30min_R1 3 SAMDSPVPASMFAPEPSSPGAAR 23 0 O00178;F8WAZ4 O00178 GTPBP1 GTP-binding protein 1 1 SAMDSPVPASMFAPEPS(0.032)S(0.968)PGAAR;SAMDSPVPASMFAPEPS(0.015)S(0.985)PGAAR;SAMDSPVPASMFAPEPS(0.011)S(0.989)PGAAR 261.94 7.43E-110 271231000 9861.3 9423.5 12547 10853.1 9230.9 8975.6 9329.3 11714.3 9164.8 11776.2 TRUE FALSE 9999.388625 10452.3896 9379.354671 10157.03074 10488.30486 10567.29664 11099.48597 10719.0971 10045.11999 9376.203976 1.066464494 1.114778393 1.000336031 1.083277494 1.118608862 1.12703357 1.183793143 1.14322354 1.071341879 1 13.19478824 -6.646745442 4.292218818 1.119256374 1.062627985 0.111283569 0.052920675 0.365478619 11.89255834 0.015726277 0.020500214 2.26E-07 6.646745442 -0.056628389 SAMPFT(ph)ASPASSTTAR ddPTM_K562_Paclitaxel_30min_R1 2 SAMPFTASPASSTTAR 16 0 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 1 SAMPFT(0.664)AS(0.308)PAS(0.001)S(0.016)T(0.005)T(0.005)AR;SAMPFT(0.531)AS(0.388)PAS(0.005)S(0.032)T(0.043)T(0.003)AR 97.904 0.0094929 34371000 5915 5339.6 6950.6 5520.1 4962.5 4102 4589.7 5388.2 5363 5629.2 TRUE FALSE 5997.828249 5922.595585 5195.835066 5166.065493 5638.476516 4829.432105 5460.571615 4930.438778 5878.140113 4481.96595 1.338213703 1.321428063 1.15927589 1.152633811 1.258036446 1.077525389 1.218342949 1.100061632 1.311509319 1 12.12991597 -2 0.036333364 0.506533102 2.269713487 0.398892502 0.084391472 995.7376783 2.768682386 38.9347279 113.5299645 0.01 2 1.763180385 SAMPFTAS(ph)PASSTTAR ddPTM_K562_Paclitaxel_30min_R1 3 SAMPFTASPASSTTAR 16 0 O00151 O00151 PDLIM1 PDZ and LIM domain protein 1 1 S(0.012)AMPFT(0.127)AS(0.837)PAS(0.002)S(0.015)T(0.003)T(0.003)AR;S(0.027)AMPFT(0.214)AS(0.68)PAS(0.006)S(0.044)T(0.011)T(0.017)AR;SAMPFT(0.166)AS(0.611)PAS(0.088)S(0.088)T(0.028)T(0.02)AR 102.15 0.0028718 188314400 7309.7 6634.5 7895.6 6852.9 6109.9 6287.2 5901.1 7194.3 6952.7 6932.9 TRUE FALSE 7412.058352 7358.877146 5902.258128 6413.385666 6942.171821 7402.146643 7020.802919 6583.09931 7620.5379 5519.971174 1.342771206 1.33313688 1.069255245 1.161851297 1.25764639 1.340975597 1.271891229 1.192596682 1.380539438 1 12.43044502 -11.16355225 4.315963993 0.999947488 1.255274859 0.420159112 0.091812568 72004185.04 5.216264719 44829.53019 0.023310467 6.86E-12 11.16355225 0.25532737 SANPPHTIQASEEQSS(ph)TPAPVKK ddPTM_K562_Paclitaxel_30min_R1 1 SANPPHTIQASEEQSSTPAPVKK 23 1 E9PS53;E9PHZ9;B7Z524;H0YDX7;J3QT46;Q9Y450-4;Q9Y450 E9PS53 HBS1L HBS1-like protein 1 SANPPHTIQAS(0.001)EEQS(0.029)S(0.485)T(0.485)PAPVKK 75.319 0.0004435 6850200 2719.3 1880.7 4636.1 2549.2 1404.5 1315.1 1604.5 2835.2 3143.4 4498.6 TRUE FALSE 2757.37859 2086.041186 3465.659216 2385.705722 1595.816678 1548.31452 1908.945499 2594.332063 3445.337615 3581.782851 0.769834103 0.58240303 0.967579376 0.666066543 0.44553697 0.432274815 0.532959584 0.724313051 0.961905777 1 11.80646216 -8.701451073 3.221921564 0.997827146 0.626260918 0.467930866 0.148468396 0.238013439 4.644218101 0.143471108 0.042991428 1.99E-09 8.701451073 -0.371566228 SAPAS(ph)PNHAGVLSAHSS(ph)GAQTPESLSR ddPTM_K562_Paclitaxel_30min_R1 1 SAPASPNHAGVLSAHSSGAQTPESLSR 27 0 Q01167-2;Q01167 Q01167-2 FOXK2 Forkhead box protein K2 2 S(0.073)APAS(0.923)PNHAGVLS(0.014)AHS(0.173)S(0.376)GAQT(0.369)PES(0.04)LS(0.033)R 55.777 0.015751 20322000 822 589.99 922.2 737.61 725.89 858.54 649.17 783.77 670.1 669.45 TRUE FALSE 833.5105361 654.4071034 689.3792044 690.302996 824.7685074 1010.790015 772.3466186 717.1838464 734.4660991 533.0157225 1.563763508 1.227744466 1.293356228 1.295089369 1.547362437 1.896360598 1.449012826 1.345520997 1.37794453 1 9.058034279 -9.336491507 1.385378624 1.001331681 1.456248038 0.3619277 0.180890189 1.568989953 4.721421339 0.192654725 0.056941997 4.61E-10 9.336491507 0.454916357 SAPAS(ph)PNHAGVLSAHSSGAQTPESLSR ddPTM_K562_Paclitaxel_30min_R1 2 SAPASPNHAGVLSAHSSGAQTPESLSR 27 0 Q01167-2;Q01167 Q01167-2 FOXK2 Forkhead box protein K2 1 S(0.01)APAS(0.99)PNHAGVLSAHSSGAQTPESLSR;S(0.001)APAS(0.999)PNHAGVLSAHSSGAQTPESLSR 149.74 1.25E-31 370950000 3243.2 2957.9 3246.6 3250.9 2427.1 2599.4 2275.92 3180.7 2426.9 3126.9 TRUE FALSE 3288.614806 3280.853525 2426.955677 3042.401824 2757.712111 3060.367093 2707.763939 2910.479682 2660.014589 2489.636064 1.320921903 1.317804467 0.974823474 1.222026733 1.107676801 1.229242755 1.087614362 1.169038208 1.068435113 1 11.28171915 -5.726786352 24.16478879 1.121149001 1.319363981 0.522493533 0.08020716 96.77097842 67479.95343 0.018958457 0.050153104 1.88E-06 5.726786352 0.19821498 SAPAS(ph)PTHPGLMSPR ddPTM_K562_Paclitaxel_30min_R1 1 SAPASPTHPGLMSPR 15 0 P85037-2;P85037 P85037-2 FOXK1 Forkhead box protein K1 1 S(0.075)APAS(0.914)PT(0.011)HPGLMSPR 92.474 0.0078802 372350000 1437.8 1328.6 1879.2 1587.5 1391.4 1467.4 1222.7 1487.5 1413 1728.4 TRUE FALSE 1457.933636 1473.661041 1404.772718 1485.684855 1580.932237 1727.622787 1454.700942 1361.12759 1548.724963 1376.151131 1.059428433 1.070856978 1.020798288 1.079594255 1.148807134 1.25540193 1.057079349 0.989082928 1.125403256 1 10.4264232 -9.25594363 0.882466405 1.003902401 1.095271383 0.115227129 0.070866247 2.312225834 3.572090982 0.07539202 0.025761895 5.55E-10 9.25594363 0.091368983 SAPAS(ph)PVQSPAK ddPTM_K562_Paclitaxel_30min_R1 3 SAPASPVQSPAK 12 0 P35612 P35612 ADD2 Beta-adducin 1 SAPAS(1)PVQSPAK;SAPAS(0.67)PVQS(0.33)PAK;S(0.004)APAS(0.993)PVQS(0.003)PAK 188.09 0.00044965 61778000 9298.8 9005.5 17514 12083 9918.4 8017.9 6783.2 10831.7 4947.2 11149.9 TRUE FALSE 9429.011889 9988.750945 13092.37409 11308.05046 11269.454 9439.761988 8070.276789 9911.479476 5422.400665 8877.54426 1.062119389 1.125170504 1.474774296 1.273781367 1.269433716 1.063330321 0.909066354 1.116466354 0.61079962 1 13.11594493 -7.499660828 2.437777946 0.914917186 1.250531998 0.499416924 0.156282736 0.25974906 3.087455773 0.066005996 0.052323962 3.16E-08 7.499660828 0.335614811 SAPASPNHAGVLSAHSSGAQT(ph)PESLSR ddPTM_K562_Paclitaxel_30min_R1 2 SAPASPNHAGVLSAHSSGAQTPESLSR 27 0 Q01167-2;Q01167 Q01167-2 FOXK2 Forkhead box protein K2 1 SAPASPNHAGVLS(0.019)AHS(0.004)S(0.009)GAQT(0.727)PES(0.099)LS(0.141)R;SAPASPNHAGVLSAHS(0.001)S(0.055)GAQT(0.902)PES(0.036)LS(0.006)R 146.78 2.75E-31 23494800 1531.4 1541.26 1721.28 1907.33 1376.8 1274.52 1367.55 1901.6 1387.2 1658.48 TRUE FALSE 1552.844325 1709.539979 1286.721575 1785.002391 1564.343469 1500.538227 1627.035473 1740.047211 1520.446758 1320.480866 1.17596882 1.29463442 0.974434094 1.351782095 1.18467712 1.136357418 1.232153767 1.317737542 1.151434146 1 10.36684768 -9.018065806 23.79947544 0.999999992 1.207701454 0.279831268 0.101026304 821.3266828 1081997.884 0.093293389 0.02408825 9.59E-10 9.018065806 0.207701463 SAPPS(ph)PALSRSHPRTGSVQTSPS(ph)S(ph)T(ph)PVAGR ddPTM_K562_Paclitaxel_30min_R1 1 SAPPSPALSRSHPRTGSVQTSPSSTPVAGR 30 2 A0A0J9YWD4;F8W6W8;A0A590UK62;A0A590UJL1;Q9UQ26-3;Q9UQ26-1;Q9UQ26-8;Q9UQ26 A0A0J9YWD4 RIMS2 Regulating synaptic membrane exocytosis protein 2 4 S(0.367)APPS(0.56)PALS(0.05)RS(0.015)HPRT(0.025)GS(0.032)VQT(0.526)S(0.526)PS(0.656)S(0.63)T(0.613)PVAGR 42.884 0.028844 16435000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 SAPSGPVRSSS(ph)GMGGR ddPTM_K562_Paclitaxel_30min_R1 1 SAPSGPVRSSSGMGGR 16 1 P38159;P38159-2;H3BUY5;H0Y6E7;H3BT71 P38159 RBMX "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed" 1 SAPS(0.001)GPVRS(0.138)S(0.076)S(0.786)GMGGR 104.78 0.0055864 2638300 1194.3 915.24 1278.1 694.03 801.7 1071.2 1077.3 1134.3 1383.6 1370 TRUE FALSE 1211.023885 1015.168998 955.4278477 649.5180222 910.9051129 1261.16228 1281.712051 1037.934135 1516.500962 1090.793248 1.110223122 0.930670409 0.875901872 0.595454751 0.835085031 1.156188198 1.175027489 0.951540667 1.390273514 1 10.09116196 -7.261544093 24.99999309 1.134103618 0.858001803 0.404491783 0.160552605 9.95208112 2375811.309 0.056102887 0.052656292 5.48E-08 7.261544093 -0.276101816 SAPT(ph)APTPPPPPPPATPR ddPTM_K562_Paclitaxel_30min_R1 1 SAPTAPTPPPPPPPATPR 18 0 A6NHN7;A6NHB5;Q14202-2;Q14202 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 S(0.017)APT(0.491)APT(0.491)PPPPPPPATPR 96.23 0.0033215 12624000 2101.3 1832.9 2491.2 2597.4 1863.4 2160.6 1804.8 2362.4 1896.8 2186.7 TRUE FALSE 2130.724683 2033.02222 1862.265749 2430.81439 2117.226628 2543.752074 2147.251378 2161.699374 2078.996115 1741.04934 1.22381637 1.167699372 1.069622616 1.396177773 1.216063542 1.461045368 1.233308746 1.241607188 1.194105226 1 10.76574137 -9.25811582 1.850570607 1.000156696 1.253185778 0.346493414 0.103599101 1.214125796 6.628963443 0.102945747 0.028873069 5.52E-10 9.25811582 0.253029082 SAPT(ph)SPTATNISSK ddPTM_K562_Paclitaxel_30min_R1 1 SAPTSPTATNISSK 14 0 Q9H792;H0YN99;H3BUZ5 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 SAPT(0.535)S(0.059)PT(0.372)AT(0.031)NIS(0.003)S(0.001)K 103.3 0.013091 11255000 1901.4 1814.9 3591.9 2446.9 1586.4 1337.9 1279.7 1939.9 1896.9 2786 TRUE FALSE 1928.025466 2013.05692 2685.080421 2289.966786 1802.494538 1575.15778 1522.516395 1775.093387 2079.105721 2218.211671 0.869180111 0.907513447 1.210470784 1.032348182 0.812589061 0.710102557 0.686371105 0.800236249 0.937289145 1 11.11518132 -6.768094751 19.02287246 0.801822736 1.012609021 0.331913751 0.122736028 8.630636347 24668.61577 0.039416524 0.046069066 1.71E-07 6.768094751 0.210786284 SAPTAPT(ph)PPPPPPPATPR ddPTM_K562_Paclitaxel_30min_R1 2 SAPTAPTPPPPPPPATPR 18 0 A6NHN7;A6NHB5;Q14202-2;Q14202 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 S(0.001)APT(0.011)APT(0.988)PPPPPPPATPR;S(0.003)APT(0.005)APT(0.992)PPPPPPPATPR 184.92 5.57E-12 50507000 4134.3 3315 5449.3 4773.3 3726.9 3737.9 3785.9 3953 3891 4456.3 TRUE FALSE 4192.192955 3676.942911 4073.556819 4467.161903 4234.566877 4400.764082 4504.254761 3617.167976 4264.747935 3548.103614 1.18153059 1.036312157 1.148094098 1.25902803 1.193473285 1.240314422 1.269482307 1.019465148 1.201979536 1 11.79283243 -11.16544775 3.032683014 0.999501269 1.171035537 0.28950806 0.080904526 10706851.91 14925980.89 52100.20387 0.021136523 6.83E-12 11.16544775 0.171534268 SAPTAPTPPPPPPPAT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 SAPTAPTPPPPPPPATPR 18 0 A6NHN7;A6NHB5;Q14202-2;Q14202 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 SAPT(0.008)APT(0.11)PPPPPPPAT(0.882)PR 238.72 2.21E-52 33564000 2254.5 2138.9 2748.1 2498.4 1955.7 2059.8 2241.1 2407.4 1998.2 2784.6 TRUE FALSE 2286.069956 2372.432335 2054.308167 2338.163806 2222.09945 2425.076609 2666.337026 2202.876343 2190.136038 2217.096992 1.031109584 1.070062494 0.926575686 1.054606007 1.00225631 1.09380718 1.202625341 0.993585915 0.987839525 1 11.11445617 -4.152923805 12.26302253 1.039748072 0.605075316 0 0.071613344 0 0 0.017055823 0 7.03E-05 4.152923805 -0.434672756 SAPTS(ph)PTATNISSK ddPTM_K562_Paclitaxel_30min_R1 1 SAPTSPTATNISSK 14 0 Q9H792;H0YN99;H3BUZ5 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 SAPT(0.007)S(0.992)PT(0.001)ATNISSK 156.2 0.0001229 9375400 2718 2739 5603.7 3528.7 2381.9 2373.1 2022.7 3361.5 3137.2 3673.7 TRUE FALSE 2756.060386 3038.053283 4188.976629 3302.384976 2706.355106 2793.935965 2406.496766 3075.919593 3438.542077 2924.997923 0.942243536 1.038651432 1.432129779 1.129021306 0.925250266 0.955192461 0.822734521 1.051597189 1.175570776 1 11.51421989 -6.688963244 6.956305609 0.981286882 1.151604949 0.196800934 0.14406554 0.354493084 27.83794134 0.04556705 0.058739733 2.05E-07 6.688963244 0.170318067 SAQGSS(ph)SPVPSMVQK ddPTM_K562_Paclitaxel_30min_R1 1 SAQGSSSPVPSMVQK 15 0 A0A494C1F2;P35658-2;P35658-4;P35658;P35658-3;P35658-5;A0A0A0MSW3;A0A494BZU9 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 SAQGS(0.079)S(0.84)S(0.079)PVPS(0.001)MVQK 230.96 2.80E-35 70027000 5952.9 5784.5 9687 6902.2 5376.5 4936.7 5059.8 6019.2 5172.5 6838.5 TRUE FALSE 6036.258966 6416.071272 7241.397043 6459.523785 6108.870325 5812.15443 6019.870636 5507.831389 5669.341736 5444.809946 1.108626201 1.178382962 1.329963234 1.1863635 1.121962086 1.067466907 1.105616302 1.01157459 1.041237764 1 12.41066598 -7.085634013 1.607729348 1.041820023 1.209424345 0.624069667 0.057228017 0.267674798 1.391919674 0.024738059 0.025693533 8.21E-08 7.085634013 0.167604322 SAQGSSS(ph)PVPSMVQK ddPTM_K562_Paclitaxel_30min_R1 3 SAQGSSSPVPSMVQK 15 0 A0A494C1F2;P35658-2;P35658-4;P35658;P35658-3;P35658-5;A0A0A0MSW3;A0A494BZU9 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 SAQGSS(0.205)S(0.795)PVPSMVQK;SAQGSS(0.166)S(0.831)PVPS(0.003)MVQK;SAQGSS(0.054)S(0.933)PVPS(0.013)MVQK 254.68 4.49E-73 114420000 15452.9 12852.8 26104.4 17884.5 13089.1 12279.1 11071.3 15007 11768.9 17489.8 TRUE FALSE 15669.28828 14256.11217 19514.02136 16737.46822 14872.05702 14456.62598 13172.02138 13732.06168 12899.35543 13925.36916 1.125233241 1.023751113 1.401328837 1.201940719 1.067982963 1.038150286 0.945901055 0.986118323 0.926320536 1 13.76542795 -7.115615866 1.991179414 0.969159263 1.189183978 0.533488837 0.091978675 0.279389686 2.19178748 0.037181455 0.0377034 7.66E-08 7.115615866 0.220024715 SAQGSSSPVPSMVQKS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 SAQGSSSPVPSMVQKSPR 18 1 A0A494C1F2;P35658-2;P35658-4;P35658;P35658-3;P35658-5;A0A0A0MSW3;A0A494BZU9 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 SAQGSSSPVPS(0.002)MVQKS(0.998)PR;SAQGSSSPVPS(0.001)MVQKS(0.999)PR 119.43 8.18E-05 165187000 6750 6312.7 11721.9 7170 5862.6 5562.4 5734.7 7832.2 7072.1 9242.3 TRUE FALSE 6844.520826 7001.941934 8762.56137 6710.148292 6661.185375 6548.81354 6822.829388 7166.805723 7751.406804 7358.714187 0.930124564 0.951517039 1.190773435 0.911864236 0.905210504 0.889939923 0.927176843 0.973920924 1.053364298 1 12.84523799 -2.070239299 20.1209967 0.970891115 0.003555931 0 0.086200918 0 0 0.020617433 0 0.008506692 2.070239299 -0.967335185 SAQIWSLAS(ph)PLR ddPTM_K562_Paclitaxel_30min_R1 2 SAQIWSLASPLR 12 0 P59923;A0A087X0J9 P59923 ZNF445 Zinc finger protein 445 1 SAQIWSLAS(1)PLR;SAQIWSLAS(1)PLR 125.36 0.0015817 76810000 3133.9 3197.2 3648.9 3221.1 2976.6 2640.1 3423.7 3878.6 2957.8 4372.5 TRUE FALSE 3177.784269 3546.281108 2727.690066 3014.513063 3382.063314 3108.284666 4073.329202 3549.088721 3241.909906 3481.3821 0.912793878 1.018641737 0.78350781 0.865895491 0.971471449 0.892830657 1.170032213 1.019448202 0.93121347 1 11.76544445 -7.674150734 24.99984323 1.03185722 0.907950392 0.359910995 0.080115613 25.00075035 7155.124075 0.03131073 0.024253179 2.12E-08 7.674150734 -0.123906828 SARLQRLPSSSS(ph)EMGSQDGSPLR ddPTM_K562_Paclitaxel_30min_R1 1 SARLQRLPSSSSEMGSQDGSPLR 23 2 A2A2G5;Q9UJ14-5;Q9UJ14 A2A2G5 GGT7 Gamma-glutamyltransferase 7;Gamma-glutamyltransferase 7 heavy chain;Gamma-glutamyltransferase 7 light chain 1 SARLQRLPS(0.042)S(0.042)S(0.154)S(0.589)EMGS(0.154)QDGS(0.019)PLR 61.276 0.0060494 45685000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 SAS(ph)ADNLTLPR ddPTM_K562_Paclitaxel_30min_R1 2 SASADNLTLPR 11 0 Q8ND76-3;Q8ND76;Q8ND76-2 Q8ND76-3 CCNY Cyclin-Y 1 S(0.184)AS(0.816)ADNLTLPR;S(0.041)AS(0.926)ADNLT(0.033)LPR 132.31 0.00084763 262699000 2386.2 2245.09 3055.5 3245.1 2654.63 2212.24 1955.79 2226.16 2526.24 3337.1 TRUE FALSE 2419.614162 2490.216519 2284.101235 3036.973811 3016.235549 2604.549703 2326.890943 2037.033813 2768.89664 2656.997188 0.910657404 0.93722964 0.859655119 1.143009795 1.135204645 0.980260617 0.875759656 0.766667658 1.042115006 1 11.37558099 -7.665013396 5.979330882 0.902159144 1.000056456 0.088348282 0.108941106 0.443648704 22.83890854 0.044963178 0.03446095 2.16E-08 7.665013396 0.097897312 SAS(ph)ASHQADIKEAR ddPTM_K562_Paclitaxel_30min_R1 1 SASASHQADIKEAR 14 1 C9JXK0;A0A494C1L1;Q14739 C9JXK0 LBR Lamin-B receptor 1 S(0.316)AS(0.684)ASHQADIKEAR 156.29 8.56E-05 61779000 2149.6 1915.3 3275 2033 952.01 1342.5 1242.8 1839.1 3295.7 2197.4 TRUE FALSE 2179.701032 2124.418931 2448.185745 1902.612479 1081.68988 1580.573525 1478.614812 1682.856976 3612.266711 1749.568674 1.245850514 1.214252954 1.399308173 1.087475163 0.618260887 0.903407536 0.845131051 0.961869632 2.064661287 1 10.77278358 -11.23916674 13.24911754 0.99999158 1.119128147 0.008504847 0.373610895 0 0 0.37031592 0.089814803 5.77E-12 11.23916674 0.119136566 SAS(ph)DASISSGTHGQYSILQTAR ddPTM_K562_Paclitaxel_30min_R1 2 SASDASISSGTHGQYSILQTAR 22 0 E7ER60;A0A1W2PR85;O15056-3;O15056-2;O15056 E7ER60 SYNJ2 Synaptojanin-2 1 S(0.161)AS(0.838)DAS(0.001)ISSGTHGQYSILQTAR;S(0.169)AS(0.831)DASISSGTHGQYSILQTAR 156.47 5.22E-18 29415000 885.51 637.07 1159.42 757.96 857.31 788.42 884.31 914.7 876.91 1176.49 TRUE FALSE 897.909872 706.627457 866.7100815 709.3478381 974.0901364 928.235217 1052.103206 836.9905256 961.1411236 936.7206922 0.95856735 0.754363027 0.925259887 0.757267181 1.039893903 0.990941296 1.123177074 0.893532653 1.026070131 1 9.871475124 -6.775232651 24.99966936 1.011424834 0.847571083 0.50358092 0.07947358 183.8689445 333252.7207 0.02320572 0.026447311 1.68E-07 6.775232651 -0.163853751 SAS(ph)EPPGEEPPWMDRGT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SASEPPGEEPPWMDRGTR 18 1 B0QYL9 B0QYL9 POLR2F 2 S(0.049)AS(0.951)EPPGEEPPWMDRGT(1)R 64.962 0.028948 38575000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 SAS(ph)EPSLHR ddPTM_K562_Paclitaxel_30min_R1 4 SASEPSLHR 9 0 P10398;Q96II5;H7C155;P04049;P04049-2 P10398;H7C155 ARAF;RAF1 Serine/threonine-protein kinase A-Raf;RAF proto-oncogene serine/threonine-protein kinase 1 S(0.111)AS(0.887)EPS(0.002)LHR;S(0.006)AS(0.994)EPSLHR;S(0.014)AS(0.986)EPSLHR;S(0.468)AS(0.532)EPSLHR 102.95 0.007056 56885200 12515.3 12502.1 17297 14253.3 12409.7 11231.2 11430.8 14244.4 12690.2 15268.1 TRUE FALSE 12690.55281 13867.12156 12930.15842 13339.15713 14100.11124 13222.89563 13599.73463 13034.24931 13909.15041 12156.45284 1.043935512 1.140721043 1.06364567 1.097290247 1.159886969 1.087726478 1.11872557 1.072208273 1.144178371 1 13.5694347 -11.07120045 4.569496205 0.99999409 1.103681137 0.426811057 0.035854882 2.01E-06 4.09E-07 0.032338432 0.007842775 8.49E-12 11.07120045 0.103687046 SAS(ph)FSQGTR ddPTM_K562_Paclitaxel_30min_R1 1 SASFSQGTR 9 0 Q9UQC2;Q9UQC2-2 Q9UQC2 GAB2 GRB2-associated-binding protein 2 1 S(0.001)AS(0.964)FS(0.035)QGTR 102.53 0.0099152 24977000 913.06 708.28 882.55 859.93 503.74 546.9 591.44 893.32 675.54 1196.9 TRUE FALSE 925.845657 785.6124056 659.7393373 804.7779387 572.3579164 643.8850361 703.6626525 817.4268901 740.4286354 952.971123 0.971535899 0.824382173 0.692297302 0.844493521 0.600603631 0.675660595 0.738388221 0.857766694 0.776968596 1 9.896288688 -9.5198534 1.06675348 0.999660547 0.762692142 0.307210417 0.100726598 2.584648278 4.097829914 0.102618427 0.031936607 3.02E-10 9.5198534 -0.236968404 SAS(ph)ITNLSLDR ddPTM_K562_Paclitaxel_30min_R1 1 SASITNLSLDR 11 0 E9PDH4;Q9Y2I7-2;Q9Y2I7-3;Q9Y2I7-4;Q9Y2I7 E9PDH4 PIKFYVE 1-phosphatidylinositol 3-phosphate 5-kinase 1 S(0.002)AS(0.962)IT(0.009)NLS(0.028)LDR 105.03 0.0067878 21249000 1340.9 1127.1 1230.1 1094.1 1136 1391.6 921.49 1344.2 1185.8 1852.6 TRUE FALSE 1359.676737 1250.16059 919.5460413 1023.929323 1290.742433 1638.380721 1096.337917 1230.00182 1299.701388 1475.039103 0.9217903 0.847544033 0.623404518 0.694170969 0.875056417 1.110737144 0.743260239 0.833877432 0.881130124 1 10.52653749 -6.909694712 7.347387294 0.903560136 0.767383904 0.242606421 0.118187668 0.372712935 25.99680482 0.038993661 0.044300766 1.23E-07 6.909694712 -0.136176231 SAS(ph)LSHPGGEGEPAR ddPTM_K562_Paclitaxel_30min_R1 1 SASLSHPGGEGEPAR 15 0 C9JXU1;A6NN40;Q2M3G4-2;Q2M3G4 C9JXU1 SHROOM1 Protein Shroom1 1 S(0.006)AS(0.985)LS(0.009)HPGGEGEPAR 90.385 0.0091975 15497000 2314.4 2012.4 2223.6 2077.4 2099.6 2133.7 1925.5 2081.2 1705.9 2725 TRUE FALSE 2346.808741 2232.120637 1662.224679 1944.164862 2385.601067 2512.081736 2290.853573 1904.38907 1869.759317 2169.643504 1.081656381 1.028796036 0.766128019 0.896075719 1.099535966 1.157831566 1.055866353 0.877742848 0.861781815 1 11.0832423 -8.269388834 24.5759737 0.902321743 1.007924517 0.141867847 0.11036284 1065.047638 3292598.283 0.066338992 0.032797251 5.38E-09 8.269388834 0.105602774 SAS(ph)PDDDLGSSNWEAADLGNEER ddPTM_K562_Paclitaxel_30min_R1 4 SASPDDDLGSSNWEAADLGNEER 23 0 E9PQA1;E9PM92;O00193 E9PQA1 C11orf58;SMAP Small acidic protein 1 S(0.112)AS(0.888)PDDDLGSSNWEAADLGNEER;S(0.152)AS(0.848)PDDDLGSSNWEAADLGNEER;S(0.429)AS(0.571)PDDDLGSSNWEAADLGNEER;S(0.419)AS(0.581)PDDDLGSSNWEAADLGNEER 206.3 3.21E-31 452691000 7547.2 6114.1 11545.9 7519.8 6010.7 5681.9 5420.22 7735.4 8564.3 8827.1 TRUE FALSE 7652.884085 6781.658115 8630.994747 7037.513685 6829.459102 6689.505187 6448.67845 7078.229487 9386.939281 7028.132175 1.088893022 0.964930361 1.228063806 1.001334851 0.971731739 0.951818352 0.917552244 1.007128112 1.335623612 1 12.77892561 -11.63873351 2.798686668 0.995907569 1.042464344 0.010023064 0.126617445 35443471.54 35118728.34 1060133.572 0.031637337 2.30E-12 11.63873351 0.046556775 SAS(ph)PDDDLGSSNWEAADLGNEERK ddPTM_K562_Paclitaxel_30min_R1 2 SASPDDDLGSSNWEAADLGNEERK 24 1 E9PQA1;E9PM92;O00193 E9PQA1 C11orf58;SMAP Small acidic protein 1 S(0.03)AS(0.826)PDDDLGS(0.125)S(0.019)NWEAADLGNEERK;S(0.043)AS(0.956)PDDDLGS(0.001)SNWEAADLGNEERK 175.33 6.50E-28 861960000 5329.8 4444.5 10149.2 6042.8 4499.4 4305 4264.4 5938.6 6122.6 6998.6 TRUE FALSE 5404.433644 4929.76554 7586.908936 5655.241855 5112.294455 5068.431305 5073.547638 5434.078862 6710.703087 5572.281478 0.969878077 0.884694278 1.361544453 1.014888045 0.917450864 0.909579196 0.910497371 0.975198199 1.204300808 1 12.44405242 SAS(ph)PHDVDLCLVSPCEFEHR ddPTM_K562_Paclitaxel_30min_R1 1 SASPHDVDLCLVSPCEFEHR 20 0 Q66K74-2;Q66K74 Q66K74-2 MAP1S Microtubule-associated protein 1S;MAP1S heavy chain;MAP1S light chain 1 S(0.172)AS(0.828)PHDVDLCLVSPCEFEHR 203.58 6.25E-21 109640000 1890.9 2182.4 2625.7 2229.6 1920 1909.9 2211 2735.2 2304.9 3315.8 TRUE FALSE 1917.378434 2420.681812 1962.809561 2086.603435 2181.536506 2248.593949 2630.525708 2502.827687 2526.295944 2640.03814 0.726269217 0.916911682 0.743477729 0.790368671 0.826327648 0.851727827 0.996396858 0.948027095 0.956916457 1 11.36634306 -7.613117478 3.290967712 0.971332289 0.80491289 0.723691037 0.050868768 0.134013416 2.895063876 0.020196569 0.015217605 2.44E-08 7.613117478 -0.166419399 SAS(ph)QDCIETTPGAQEGKK ddPTM_K562_Paclitaxel_30min_R1 2 SASQDCIETTPGAQEGKK 18 1 Q99767-2;Q99767 Q99767-2 APBA2 Amyloid beta A4 precursor protein-binding family A member 2 1 S(0.182)AS(0.818)QDCIETTPGAQEGKK;S(0.187)AS(0.813)QDCIETTPGAQEGKK 119.16 7.68E-05 22600000 3342.9 2318.4 7176.5 3664.1 2290.17 2059.35 2030.03 3278.3 3226.3 4128.9 TRUE FALSE 3389.710914 2571.530752 5364.703817 3429.101026 2602.129927 2424.546808 2415.217595 2999.787952 3536.20053 3287.427914 1.031113382 0.78223183 1.631884853 1.043095428 0.791539768 0.737520904 0.734683059 0.912503036 1.075673938 1 11.68274354 -6.580863858 6.419535047 0.860191677 1.147716371 0.238830908 0.220525585 0.284904355 23.71545887 0.067472709 0.087739587 2.63E-07 6.580863858 0.287524694 SAS(ph)QGALTSPSVSFSNHR ddPTM_K562_Paclitaxel_30min_R1 2 SASQGALTSPSVSFSNHR 18 0 Q5T5U3;A0A087WW76;A0A452Q6Z5;E7ESW5;A0A1B0GV73;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 S(0.225)AS(0.775)QGALTSPSVSFSNHR;S(0.428)AS(0.571)QGALT(0.001)SPSVSFSNHR 99.13 0.0008059 49881000 1542.59 1765.3 1799.68 1556.9 1236.66 1452.48 1179.39 1304.65 1533.95 1601.89 TRUE FALSE 1564.191019 1958.041424 1345.328526 1457.047402 1405.114029 1710.056934 1403.173096 1193.811839 1681.292751 1275.423939 1.226408704 1.535208306 1.054808903 1.142402427 1.101683908 1.340775316 1.100162113 0.936011786 1.318222671 1 10.31676115 -2 0.233852338 1.061087056 2.744187276 0.18306608 0.155137297 79.53055755 1.049098432 0.218331596 51.53140112 0.01 2 1.68310022 SAS(ph)SGAEGDVSSEREP ddPTM_K562_Paclitaxel_30min_R1 1 SASSGAEGDVSSEREP 16 1 Q8TEA8 Q8TEA8 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 1 S(0.04)AS(0.887)S(0.073)GAEGDVSSEREP 252.12 5.71E-64 76533000 3137 3166.9 3997.1 3539.3 2764.1 2492.4 2401.8 3518.8 3211.3 3730 TRUE FALSE 3180.927678 3512.672852 2987.982669 3312.305139 3140.617217 2934.392145 2857.529012 3219.855976 3519.759713 2969.823953 1.071082909 1.182788242 1.006114409 1.115320367 1.057509558 0.988069391 0.962188014 1.084190857 1.185174532 1 11.5361617 -6.936477817 6.703259838 1.041797228 1.093459043 0.100378265 0.070654136 0.53744962 44.8134329 0.023025718 0.026120637 1.16E-07 6.936477817 0.051661816 SAS(ph)TEKLEQGTSALIR ddPTM_K562_Paclitaxel_30min_R1 1 SASTEKLEQGTSALIR 16 1 A0A0A0MRP0;Q8IWC1-2;Q8IWC1-4;Q8IWC1 A0A0A0MRP0 MAP7D3 MAP7 domain-containing protein 3 1 S(0.02)AS(0.926)T(0.054)EKLEQGTSALIR 134.08 1.02E-06 29933000 2715.5 2179.9 4039.5 2268.8 1248.8 1016.3 787.51 1023.1 821.66 1058.8 TRUE FALSE 2753.525378 2417.908854 3019.678265 2123.289323 1418.907702 1196.526535 936.9359114 936.181269 900.5841143 843.0159788 3.266278988 2.868164916 3.581994103 2.518682179 1.683132631 1.41934028 1.111409433 1.110514264 1.068288309 1 9.719416167 -6.76857944 1.637844427 1.125550304 3.227767628 0.955345756 0.200488107 0.069055042 0.383995167 0.072395377 0.096810655 1.70E-07 6.76857944 2.102217324 up SASNVPSGKS(ph)TDEEEEAQTPQAPR ddPTM_K562_Paclitaxel_30min_R1 1 SASNVPSGKSTDEEEEAQTPQAPR 24 1 Q9P2K3-3;Q9P2K3 Q9P2K3-3 RCOR3 REST corepressor 3 1 S(0.001)AS(0.001)NVPS(0.138)GKS(0.474)T(0.352)DEEEEAQT(0.035)PQAPR 50.873 0.02392 12644000 441.35 370.8 394.47 448.26 380.74 393.83 336.53 405.6 360.19 392.61 TRUE FALSE 447.5302617 411.285198 294.8811698 419.5106099 432.603234 463.6702209 400.3848107 371.1417483 394.7878589 312.5958665 1.431657644 1.31570901 0.943330355 1.342022256 1.383905804 1.483289674 1.280838468 1.187289367 1.262933715 1 8.288154891 -10.6099622 6.522661818 1 1.289097465 0.276300009 0.141846531 4.09E-10 3.33E-10 0.14574088 0.035347355 2.45E-11 10.6099622 0.289097465 SASPDDDLGS(ph)SNWEAADLGNEERK ddPTM_K562_Paclitaxel_30min_R1 2 SASPDDDLGSSNWEAADLGNEERK 24 1 E9PQA1;E9PM92;O00193 E9PQA1 C11orf58;SMAP Small acidic protein 1 S(0.001)AS(0.036)PDDDLGS(0.933)S(0.031)NWEAADLGNEERK;S(0.04)AS(0.278)PDDDLGS(0.512)S(0.17)NWEAADLGNEERK 206.8 1.04E-39 47953000 2862.9 2446.31 5210.5 2847.6 2114.61 2271.8 2095.1 3146.8 2785.6 3838.8 TRUE FALSE 2902.989433 2713.406399 3895.044832 2664.967681 2402.655683 2674.671832 2492.634288 2879.459698 3053.169326 3056.450453 0.949791098 0.887763908 1.274368714 0.871915878 0.78609345 0.875090852 0.815532372 0.942092713 0.998926491 1 11.57764146 SASS(ph)GAEGDVSSEREP ddPTM_K562_Paclitaxel_30min_R1 1 SASSGAEGDVSSEREP 16 1 Q8TEA8 Q8TEA8 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 1 S(0.003)AS(0.24)S(0.756)GAEGDVSSEREP 103.66 0.006794 86610000 3626 2983.6 4106.8 3941 3288.8 2982.8 2972.2 3774.3 4180 4202.6 TRUE FALSE 3676.775187 3309.359538 3069.987548 3688.241899 3736.79024 3511.757699 3536.159434 3453.649657 4581.507677 3346.107813 1.098821494 0.989017606 0.917480165 1.102248375 1.116757274 1.049505245 1.056797818 1.032139384 1.369205038 1 11.70826822 -7.305286604 0.709620311 1.131907576 1.012741821 0.119832912 0.107061242 1.507797454 1.65186297 0.079895801 0.077164144 4.95E-08 7.305286604 -0.119165755 SASSASSLFS(ph)PSSTLFSSSR ddPTM_K562_Paclitaxel_30min_R1 1 SASSASSLFSPSSTLFSSSR 20 0 H0YEH2;Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;E9PR38;Q14671-4;H0YDK8 H0YEH2 PUM1 Pumilio homolog 1 1 SASSASS(0.001)LFS(0.918)PS(0.02)S(0.02)T(0.008)LFS(0.007)S(0.007)S(0.02)R 94.057 0.00093382 23749000 684.9 570.55 750.32 713.21 355.95 623.86 597.78 659.58 583.37 736.16 TRUE FALSE 694.4907131 632.8445785 560.8924362 667.4679028 404.4364163 734.4928116 711.2056344 603.544562 639.4052951 586.1301879 1.1848745 1.079699684 0.95694173 1.138770731 0.690011237 1.253122304 1.213391921 1.029710761 1.090892959 1 9.195077333 SASSEEASES(ph)PTAR ddPTM_K562_Paclitaxel_30min_R1 2 SASSEEASESPTAR 14 0 A0A075B6Q3;Q5H9F3-3 A0A075B6Q3 BCORL1 1 SASSEEAS(0.015)ES(0.955)PT(0.03)AR;SASSEEAS(0.001)ES(0.997)PT(0.002)AR 206.67 7.71E-13 14910800 3249.6 2804.5 3633.8 3003.3 2547.8 2939.1 2756 3680.7 2594.9 3320.4 TRUE FALSE 3295.104426 3110.704794 2716.402248 2810.68178 2894.853495 3460.308118 3278.936613 3368.001561 2844.151739 2643.700657 1.246398459 1.176647888 1.027499933 1.063161887 1.095000482 1.30888802 1.24028286 1.273972358 1.075822155 1 11.36834312 SASSGAEGDVSS(ph)EREP ddPTM_K562_Paclitaxel_30min_R1 2 SASSGAEGDVSSEREP 16 1 Q8TEA8 Q8TEA8 DTD1 D-tyrosyl-tRNA(Tyr) deacylase 1 1 SASSGAEGDVS(0.191)S(0.809)EREP;SASSGAEGDVS(0.019)S(0.981)EREP 172.09 1.53E-08 26241000 4683 4268.9 5993.2 4634.2 4502.6 3730.2 4360.6 4779.1 5464.4 5144.3 TRUE FALSE 4748.576448 4734.992938 4480.142537 4336.983154 5115.93035 4391.698595 5188.001086 4373.085625 5989.280036 4095.888836 1.159351886 1.15603551 1.093814485 1.058862515 1.249040331 1.07222114 1.266636204 1.067676834 1.462266256 1 11.99996085 -7.760914276 24.99999815 1.204784551 1.132987753 0.064780734 0.125009543 40.64703723 1935382.809 0.046489713 0.033754879 1.73E-08 7.760914276 -0.071796798 SAST(ph)EKLEQGTSALIR ddPTM_K562_Paclitaxel_30min_R1 1 SASTEKLEQGTSALIR 16 1 A0A0A0MRP0;Q8IWC1-2;Q8IWC1-4;Q8IWC1 A0A0A0MRP0 MAP7D3 MAP7 domain-containing protein 3 1 S(0.011)AS(0.367)T(0.62)EKLEQGT(0.001)S(0.001)ALIR 99.055 0.016589 27796000 2893.1 2056.7 4119.1 1992 1169.3 1079.9 630.35 1029.1 999.2 925.61 TRUE FALSE 2933.612326 2281.257461 3079.182261 1864.242036 1328.578456 1271.405102 749.9556219 941.6715316 1095.177625 736.9701739 3.980639149 3.095454256 4.178164015 2.529603099 1.80275743 1.725178504 1.017620045 1.277760708 1.486054203 1 9.525462423 -6.64614276 1.652952745 1.299566328 3.723599769 0.901630679 0.351708437 0.102999813 0.578688675 0.118654575 0.17609486 2.26E-07 6.64614276 2.424033441 SASVVSSDSISTS(ph)ADNFSPDLR ddPTM_K562_Paclitaxel_30min_R1 1 SASVVSSDSISTSADNFSPDLR 22 0 Q13614 Q13614 MTMR2 Myotubularin-related protein 2 1 SASVVSS(0.001)DS(0.008)IS(0.142)T(0.142)S(0.611)ADNFS(0.095)PDLR 123.63 1.85E-07 16656000 1477.6 1434.2 1998.6 1668 1297.4 1202.5 1416.6 1523.7 1466.8 1534.9 TRUE FALSE 1498.290959 1590.790806 1494.028712 1561.021946 1474.127845 1415.746491 1685.392455 1394.252174 1607.692694 1222.086537 1.226010526 1.301700622 1.222522846 1.277341578 1.206238511 1.158466645 1.379110565 1.140878433 1.315530975 1 10.25513073 -11.47578155 3.348676485 0.995687628 1.246166509 0.535196036 0.069193822 26809276.05 29160916.36 1042414.302 0.015972618 3.34E-12 11.47578155 0.250478881 SASVVSSDSISTSADNFS(ph)PDLR ddPTM_K562_Paclitaxel_30min_R1 1 SASVVSSDSISTSADNFSPDLR 22 0 Q13614 Q13614 MTMR2 Myotubularin-related protein 2 1 SASVVSSDSIS(0.001)T(0.001)S(0.004)ADNFS(0.994)PDLR 193.47 4.23E-24 20633000 1743.3 1692.4 1758 2034.6 1485.4 1739.8 1382.6 1861.3 1699.5 1582.8 TRUE FALSE 1767.711579 1877.181955 1314.171157 1904.109863 1687.736628 2048.329102 1644.941132 1703.170947 1862.744569 1260.224491 1.402695782 1.489561557 1.042807188 1.510929105 1.339234906 1.625368429 1.305276277 1.351482184 1.478105355 1 10.29946504 -10.86387018 7.554395199 0.999999999 1.391207117 0.388681102 0.148178124 2.48E-09 2.74E-10 0.139060751 0.033727186 1.37E-11 10.86387018 0.391207119 SASY(ph)PCAAPRPGAPETTALHGGFQR ddPTM_K562_Paclitaxel_30min_R1 2 SASYPCAAPRPGAPETTALHGGFQR 25 1 H7C152;Q7Z3C6-2;Q7Z3C6 H7C152 ATG9A Autophagy-related protein 9A 1 S(0.009)AS(0.03)Y(0.96)PCAAPRPGAPETT(0.001)ALHGGFQR;S(0.322)AS(0.287)Y(0.39)PCAAPRPGAPETTALHGGFQR 80.994 0.00011137 109132000 3229.41 3421.66 3913.59 4003.9 3186.6 3789.96 3120.44 4120.6 2852.18 4601.3 TRUE FALSE 3274.631704 3795.24841 2925.555802 3747.107775 3620.66887 4462.056192 3712.5272 3770.52931 3126.144633 3663.552534 0.89384052 1.035947588 0.798557077 1.022807163 0.988294514 1.217958839 1.013368081 1.029200284 0.853309623 1 11.83902759 -6.464010164 24.98583331 1.026274006 0.920195492 0.195928178 0.098922536 433.8837743 184154.373 0.028092326 0.041667526 3.44E-07 6.464010164 -0.106078515 SAT(ph)ASPQPWREESGQY(ph)ER ddPTM_K562_Paclitaxel_30min_R1 1 SATASPQPWREESGQYER 18 1 Q9BX66-2 Q9BX66-2 SORBS1 Sorbin and SH3 domain-containing protein 1 2 S(0.221)AT(0.739)AS(0.041)PQPWREES(0.113)GQY(0.887)ER 69.878 0.026792 17047000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 SAT(ph)LDRIQACT(ph)QQGLS(ph)SKT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SATLDRIQACTQQGLSSKTR 20 2 A0A2R8YCY2;A0A0C4DFX2;A0A286YFA9;A0A2R8Y5V8;Q5TBA9 A0A2R8YCY2 FRY Protein furry homolog 4 S(0.232)AT(0.769)LDRIQACT(1)QQGLS(0.615)S(0.615)KT(0.77)R 49.208 0.02719 12004000 1332.4 1254 1221.7 1240.8 1073.4 757.51 891.24 1013.4 1021.5 1397.8 TRUE FALSE 1351.057711 1390.915961 913.2667252 1161.220642 1219.615253 891.8437625 1060.348137 927.3053446 1119.619639 1112.927593 1.213967305 1.249781181 0.820598511 1.043392804 1.095862175 0.801349314 0.952755727 0.833212646 1.006013012 1 10.12014402 -5.748392445 24.9936794 0.942361617 1.231874441 0.599379137 0.094083496 150.4643614 288235.7777 0.023972701 0.062581905 1.78E-06 5.748392445 0.289512824 SAT(ph)TTGSPGTEK ddPTM_K562_Paclitaxel_30min_R1 1 SATTTGSPGTEK 12 0 A0A1B0GUI1;Q6GYQ0-3;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 S(0.014)AT(0.584)T(0.37)T(0.03)GS(0.002)PGTEK 161.48 0.0033701 8211300 3414.6 2746.6 6234.3 4123.8 2703.6 2539.4 2698.3 3945.5 3462.3 4596 TRUE FALSE 3462.414935 3046.483076 4660.37386 3859.317925 3071.876092 2989.726935 3210.288339 3610.305148 3794.869385 3659.332677 0.946187527 0.832524218 1.273558397 1.054650743 0.839463466 0.817014248 0.877287916 0.986602057 1.037038641 1 11.83736486 SATAS(ph)PQQPQAQQR ddPTM_K562_Paclitaxel_30min_R1 2 SATASPQQPQAQQR 14 0 Q9BX66-4;Q9BX66-9;Q9BX66-8;Q9BX66-10;Q9BX66-6;Q9BX66-5;Q9BX66-12;A0A0U1RQI5 Q9BX66-4 SORBS1 Sorbin and SH3 domain-containing protein 1 1 SAT(0.002)AS(0.998)PQQPQAQQR;S(0.239)AT(0.158)AS(0.603)PQQPQAQQR 105.63 0.0042798 5394680 623.73 381.77 878.84 912 567.42 564.51 448.45 751.14 317.3 490.84 TRUE FALSE 632.4641444 423.4529397 656.9659726 853.508402 644.7122105 664.6179224 533.5410464 687.3259685 347.7780827 390.8065386 1.618356097 1.083535964 1.68105164 2.183966535 1.649696581 1.700631532 1.365230603 1.758737126 0.889898322 1 8.610310795 -8.765405044 24.99994461 0.944948755 1.626257724 0.515300023 0.265796741 90.25417986 568932.4759 0.2410911 0.071277237 1.72E-09 8.765405044 0.681308968 SATDGNTS(ph)TTPPTSAK ddPTM_K562_Paclitaxel_30min_R1 1 SATDGNTSTTPPTSAK 16 0 A0A669KAU9;A0A669KAX4;Q13620-1;K4DI93;Q13620 A0A669KAU9 CUL4B Cullin-4B 1 SATDGNT(0.217)S(0.292)T(0.292)T(0.191)PPT(0.007)S(0.002)AK 83.823 0.01761 17527000 4452 4746 8623.7 5075.8 4881.1 4440.8 3491 5414.7 4813.3 6162.7 TRUE FALSE 4514.341736 5264.18433 6446.540278 4750.260906 5545.988458 5228.313528 4153.399026 4954.687438 5275.638971 4906.738357 0.920029031 1.072847979 1.313813741 0.968109681 1.130280046 1.06553746 0.846468412 1.009772088 1.075182451 1 12.26054863 -7.546085166 24.84262563 0.979717596 1.088291559 0.149847499 0.111266026 398.1484967 426216.5607 0.042931323 0.033256355 2.84E-08 7.546085166 0.108573963 SATDGNTSTT(ph)PPTSAK ddPTM_K562_Paclitaxel_30min_R1 3 SATDGNTSTTPPTSAK 16 0 A0A669KAU9;A0A669KAX4;Q13620-1;K4DI93;Q13620 A0A669KAU9 CUL4B Cullin-4B 1 SATDGNT(0.092)S(0.054)T(0.054)T(0.614)PPT(0.144)S(0.042)AK;SATDGNT(0.135)S(0.329)T(0.098)T(0.436)PPT(0.002)SAK;SAT(0.002)DGNT(0.025)S(0.133)T(0.133)T(0.706)PPTSAK 129.05 4.29E-05 70262000 14120.1 11847.8 24926.2 15517.6 12750.5 11210.3 10082.7 15888.1 14555.3 17227.9 TRUE FALSE 14317.82496 13141.38287 18633.27253 14522.37059 14487.33397 13198.2893 11995.83969 14538.30673 15953.4016 13716.84452 1.043813316 0.958047082 1.358422667 1.058725319 1.056171042 0.962195735 0.874533474 1.059887113 1.163051865 1 13.74366102 -6.776133506 3.108613497 1.008976015 1.115413225 0.120747307 0.117673834 0.53492288 10.67287026 0.03954228 0.048784613 1.67E-07 6.776133506 0.10643721 SATRPS(ph)PS(ph)PERSSTGPEPPAPTPLLAER ddPTM_K562_Paclitaxel_30min_R1 3 SATRPSPSPERSSTGPEPPAPTPLLAER 28 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.044)AT(0.044)RPS(0.914)PS(0.944)PERS(0.05)S(0.002)T(0.001)GPEPPAPTPLLAER;S(0.102)AT(0.102)RPS(0.769)PS(0.806)PERS(0.18)S(0.026)T(0.016)GPEPPAPTPLLAER;S(0.081)AT(0.081)RPS(0.66)PS(0.887)PERS(0.159)S(0.072)T(0.037)GPEPPAPT(0.022)PLLAER 84.646 9.04E-06 624403000 3949.68 3360.45 5438.9 4024.1 3631.19 2955.17 2926.49 3705.38 4901.4 4117.68 TRUE FALSE 4004.987706 3727.355295 4065.782428 3766.012237 4125.819555 3479.227907 3481.7762 3390.584841 5372.20137 3278.494556 1.22159352 1.136910625 1.240137008 1.14870169 1.258449415 1.061227294 1.06200457 1.03418956 1.638618359 1 11.67881778 -12.07880728 2.855027596 0.686602991 1.186679891 0.112376046 0.164903239 128594050.6 153112300.9 256407388.1 0.039660375 8.34E-13 12.07880728 0.5000769 SATRPS(ph)PSPERS(ph)STGPEPPAPTPLLAER ddPTM_K562_Paclitaxel_30min_R1 1 SATRPSPSPERSSTGPEPPAPTPLLAER 28 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.019)AT(0.023)RPS(0.928)PS(0.284)PERS(0.546)S(0.173)T(0.025)GPEPPAPT(0.001)PLLAER 54.926 0.015516 902030000 785.26 1056.4 1316 1174.4 862.5 947.58 868.34 1079.3 1351.8 1128.8 TRUE FALSE 796.2560627 1171.741325 983.7595239 1099.07924 979.9871022 1115.620008 1033.102982 987.6067282 1481.64643 898.7499404 0.885959517 1.303745649 1.094586469 1.222897706 1.09038906 1.2413019 1.149488791 1.098867086 1.648563592 1 9.81177596 SATRPSPS(ph)PERS(ph)STGPEPPAPTPLLAER ddPTM_K562_Paclitaxel_30min_R1 1 SATRPSPSPERSSTGPEPPAPTPLLAER 28 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 SAT(0.001)RPS(0.06)PS(0.506)PERS(0.791)S(0.525)T(0.115)GPEPPAPT(0.002)PLLAER 77.241 0.00017798 979260000 1755.1 1807.1 2427.1 1997 1444.2 1684.6 1340.2 1970.9 2318.4 2102.8 TRUE FALSE 1779.676815 2004.405289 1814.348587 1868.921358 1640.924491 1983.340157 1594.495954 1803.459743 2541.092679 1674.248206 1.062970717 1.197197215 1.083679577 1.116274966 0.980096311 1.18461537 0.952365335 1.077175855 1.517751472 1 10.70929771 SATRPSPS(ph)PERSSTGPEPPAPTPLLAER ddPTM_K562_Paclitaxel_30min_R1 3 SATRPSPSPERSSTGPEPPAPTPLLAER 28 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.001)AT(0.004)RPS(0.225)PS(0.717)PERS(0.049)S(0.004)T(0.001)GPEPPAPTPLLAER;SATRPS(0.002)PS(0.98)PERS(0.015)S(0.002)T(0.002)GPEPPAPTPLLAER;S(0.016)AT(0.016)RPS(0.031)PS(0.234)PERS(0.234)S(0.234)T(0.234)GPEPPAPTPLLAER 98.267 4.47E-07 140251000 2420.44 2160.33 2847.28 2199.58 2222.86 2027.33 1744 2053.79 3843.05 2492.17 TRUE FALSE 2454.333628 2396.202135 2128.448949 2058.508784 2525.651165 2386.84851 2074.914896 1879.30772 4212.192124 1984.264386 1.236898492 1.207602249 1.072663988 1.037416585 1.272840042 1.202888349 1.045684693 0.947105503 2.122797825 1 10.95438855 -8.714101721 24.9999988 1.561421747 1.130279796 0.292859626 0.269431657 117.1379968 61862.96625 0.165864959 0.062690657 1.93E-09 8.714101721 -0.431141951 SAVENCQDSWRR ddPTM_K562_Paclitaxel_30min_R1 1 SAVENCQDSWRR 12 1 P52209-2;P52209 P52209-2 PGD "6-phosphogluconate dehydrogenase, decarboxylating" 0 112.94 0.0074888 34538000 2887.3 2490.9 3970.9 3474.1 2547.9 2443.2 2653 3167.2 3778.4 3333.7 FALSE TRUE 2927.731108 2762.864886 2968.397184 3251.286775 2894.967116 2876.467216 3156.3929 2898.126591 4141.332202 2654.29011 1.103018505 1.040905391 1.11833939 1.224917639 1.090674718 1.083704907 1.189166508 1.091865045 1.56024098 1 11.37411035 SAVS(ph)PDLHITPIYEGR ddPTM_K562_Paclitaxel_30min_R1 3 SAVSPDLHITPIYEGR 16 0 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 S(0.055)AVS(0.945)PDLHITPIYEGR;S(0.014)AVS(0.986)PDLHITPIYEGR;S(0.34)AVS(0.655)PDLHIT(0.005)PIYEGR 225.6 1.18E-30 34713300 4956.41 4528.56 5650.84 5336.7 4324.37 4093.73 4227.22 5310.25 5125 5072.1 TRUE FALSE 5025.815032 5023.003495 4224.215553 4994.427948 4913.422406 4819.695537 5029.312927 4859.111117 5617.279149 4038.403236 1.244505498 1.243809298 1.046011333 1.236733346 1.216674542 1.193465648 1.245371656 1.203225838 1.390965394 1 11.97956926 SAVSIGGGNTSAVS(ph)PSSIR ddPTM_K562_Paclitaxel_30min_R1 1 SAVSIGGGNTSAVSPSSIR 19 0 O95789-1;O95789 O95789-1 ZMYM6 Zinc finger MYM-type protein 6 1 SAVSIGGGNT(0.003)S(0.023)AVS(0.886)PS(0.066)S(0.023)IR 74.744 0.011865 7508400 811.58 698.01 1141.1 689.81 525.54 478.81 614.86 541.57 644.71 848.87 TRUE FALSE 822.9446239 774.2210923 853.0151921 645.5686741 597.1274455 563.7202307 731.5264752 495.5602481 706.6372761 675.869828 1.217608169 1.145518057 1.262099826 0.955167175 0.883494751 0.834066276 1.082348175 0.73321848 1.045522742 1 9.400601601 -6.327756397 5.578979169 0.920182777 1.201749711 0.612713279 0.09992879 0.130047305 7.91126711 0.026534288 0.040068793 4.70E-07 6.327756397 0.281566935 SAVVAAAAPASVADDT(ph)PPPERR ddPTM_K562_Paclitaxel_30min_R1 2 SAVVAAAAPASVADDTPPPERR 22 1 D6RCN9;D6R966;D6RHG9;D6RHC6;D6RIR8;D6R9V1;E7EV55;D6RDY2;D6RBE0;E7EVI8;Q7LFL8 D6RCN9 CXXC5 CXXC-type zinc finger protein 5 1 SAVVAAAAPAS(0.004)VADDT(0.996)PPPERR;SAVVAAAAPAS(0.022)VADDT(0.978)PPPERR 103.45 0.00022918 53841000 4197.5 3473.4 8798.75 4527.15 3775.27 2868.08 2828.43 4925.2 4080.1 5468.1 TRUE FALSE 4256.27795 3852.637558 6577.396741 4236.798862 4289.52569 3376.693718 3365.109827 4506.773518 4472.011835 4353.698218 0.97762356 0.884911486 1.510760832 0.973149412 0.985260226 0.775592048 0.772931347 1.035159832 1.027175429 1 12.08802569 -6.503286359 24.91595874 0.924111291 1.124059097 0.194094489 0.174796683 1201.200469 1527586.871 0.051359031 0.074942245 3.14E-07 6.503286359 0.199947806 SAYPPPAPAYALS(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 3 SAYPPPAPAYALSSPR 16 0 O14497-2;O14497 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 SAYPPPAPAYALS(0.614)S(0.386)PR;SAYPPPAPAYALS(0.5)S(0.5)PR;SAYPPPAPAYALS(0.5)S(0.5)PR 252.01 2.32E-64 89456000 5095.3 4548.9 5679.4 5627.8 4499.6 4117.2 4275.4 5113.4 4095.2 5375.3 TRUE FALSE 5166.64992 5045.564285 4245.565228 5266.858097 5112.521699 4847.327612 5086.634831 4678.984753 4488.562258 4279.810909 1.207214531 1.178922245 0.991998319 1.230628691 1.194567192 1.132603219 1.188518591 1.093269037 1.048775834 1 12.06333134 -8.699881126 1.913235918 1.00539115 1.157889059 0.435120108 0.062819408 0.326006312 2.232894732 0.059083797 0.017637863 2.00E-09 8.699881126 0.152497908 SAYQEYDS(ph)DSDVPEELKR ddPTM_K562_Paclitaxel_30min_R1 1 SAYQEYDSDSDVPEELKR 18 1 H0Y7Q2;Q96JG6-3;Q96JG6 H0Y7Q2 CCDC132 Coiled-coil domain-containing protein 132 1 SAYQEYDS(0.99)DS(0.01)DVPEELKR 76.492 0.0087982 10459000 643.44 689.02 1360.7 825.33 732.6 593.23 647.93 818.72 396.02 1259.7 TRUE FALSE 652.4501452 764.2495337 1017.174456 772.3970278 832.392523 698.4310111 770.8713351 749.1646257 434.0594905 1002.972449 0.650516518 0.761984574 1.014159918 0.770107922 0.829925612 0.696361114 0.768586751 0.746944372 0.432773095 1 9.970066261 -7.260727016 23.65199877 0.715595443 0.812574227 0.053764656 0.153817585 83.74708078 2780612.234 0.05142985 0.04852706 5.49E-08 7.260727016 0.096978784 SCDEPLT(ph)PPPHS(ph)PTSMLQLIHDPVS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 SCDEPLTPPPHSPTSMLQLIHDPVSPR 27 0 Q9Y2K7-5;I3VM54;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7;Q9Y2K7-3 Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 3 S(0.016)CDEPLT(0.983)PPPHS(0.947)PT(0.057)S(0.053)MLQLIHDPVS(0.944)PR;S(0.022)CDEPLT(0.973)PPPHS(0.61)PT(0.25)S(0.257)MLQLIHDPVS(0.888)PR 68.287 0.00083003 74761000 3181.35 3045.48 4205.4 3519.3 3295.2 3045.74 2989.23 3512.64 3549.3 3755.6 TRUE FALSE 3225.898715 3377.995806 3143.694758 3293.58785 3744.062028 3585.859225 3556.420788 3214.219307 3890.226124 2990.206659 1.078821327 1.129686403 1.051330265 1.101458269 1.252108117 1.199201137 1.189356186 1.07491544 1.300989051 1 11.54602948 -6.555021103 23.59547598 1.17576142 1.088499063 0.18341526 0.081534397 158.3589641 116248.8967 0.022640338 0.029228916 2.79E-07 6.555021103 -0.087262356 SCDEPLT(ph)PPPHS(ph)PTSMLQLIHDPVSPR ddPTM_K562_Paclitaxel_30min_R1 2 SCDEPLTPPPHSPTSMLQLIHDPVSPR 27 0 Q9Y2K7-5;I3VM54;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7;Q9Y2K7-3 Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 2 S(0.023)CDEPLT(0.973)PPPHS(0.667)PT(0.24)S(0.098)MLQLIHDPVSPR;S(0.132)CDEPLT(0.869)PPPHS(0.932)PT(0.052)S(0.016)MLQLIHDPVSPR 108.94 1.32E-09 87819000 3887.6 3952 4681.4 4043 3415.4 3501.1 3130 4229.3 3624.8 4915.5 TRUE FALSE 3942.038394 4383.492725 3499.522671 3783.700076 3880.635303 4121.970927 3723.90116 3869.994567 3972.978236 3913.718402 1.007236083 1.120032735 0.894168234 0.966778824 0.991546888 1.053210912 0.951499515 0.988828058 1.015141568 1 11.93432424 -5.746332963 24.99998269 0.983406635 1.063634366 0.324156939 0.046765747 279.8694797 463155.1848 0.011774572 0.030892084 1.79E-06 5.746332963 0.080227731 SCDEPLTPPPHS(ph)PTSMLQLIHDPVS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 SCDEPLTPPPHSPTSMLQLIHDPVSPR 27 0 Q9Y2K7-5;I3VM54;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7;Q9Y2K7-3 Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 2 S(0.001)CDEPLT(0.03)PPPHS(0.388)PT(0.388)S(0.388)MLQLIHDPVS(0.803)PR 46.92 0.028408 38442000 1732.2 1305.7 1763.9 1680.4 1492.2 1435.6 1209.4 1838.8 1557.1 1794.3 TRUE FALSE 1756.456144 1448.260742 1318.581629 1572.626665 1695.462903 1690.183503 1438.877337 1682.582463 1706.666412 1428.620675 1.229476918 1.013747573 0.922975323 1.100800718 1.186783121 1.183087668 1.007179416 1.177767123 1.194625307 1 10.48040719 -6.512524703 24.63081516 1.13199755 1.044676921 0.087061147 0.097237138 835.2200315 1986873.755 0.028198327 0.038858098 3.07E-07 6.512524703 -0.087320629 SCDEPLTPPPHS(ph)PTSMLQLIHDPVSPR ddPTM_K562_Paclitaxel_30min_R1 5 SCDEPLTPPPHSPTSMLQLIHDPVSPR 27 0 Q9Y2K7-5;I3VM54;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7;Q9Y2K7-3 Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 S(0.001)CDEPLT(0.021)PPPHS(0.343)PT(0.311)S(0.311)MLQLIHDPVS(0.013)PR;SCDEPLT(0.006)PPPHS(0.93)PT(0.047)S(0.017)MLQLIHDPVSPR;SCDEPLT(0.034)PPPHS(0.951)PT(0.012)S(0.004)MLQLIHDPVSPR;SCDEPLT(0.003)PPPHS(0.975)PT(0.016)S(0.006)MLQLIHDPVSPR;S(0.01)CDEPLT(0.254)PPPHS(0.339)PT(0.108)S(0.288)MLQLIHDPVSPR 143 2.55E-24 292224000 10885.7 10153.05 13084.3 11733.9 9613.39 9947.8 9365.35 12250.6 11246.67 12669.1 TRUE FALSE 11038.13339 11261.59433 9781.00664 10981.34017 10922.89647 11711.90266 11142.37627 11209.83506 12326.9629 10087.13047 1.094278836 1.11643191 0.969652041 1.088648572 1.082854684 1.161073776 1.104613082 1.111300692 1.222048525 1 13.3002282 -6.992492015 3.140957227 1.125803616 1.064099125 0.127801074 0.063513094 0.464701774 9.48156766 0.02085885 0.02274575 1.02E-07 6.992492015 -0.061704491 SCDEPLTPPPHSPT(ph)SMLQLIHDPVS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 SCDEPLTPPPHSPTSMLQLIHDPVSPR 27 0 Q9Y2K7-5;I3VM54;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7;Q9Y2K7-3 Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 2 SCDEPLT(0.009)PPPHS(0.371)PT(0.521)S(0.147)MLQLIHDPVS(0.951)PR 67.198 0.00050823 46670000 1640.5 1781 2031.4 1480.5 1622.7 1520.2 1355.9 1819.4 1911 1925.8 TRUE FALSE 1663.472061 1975.455603 1518.547946 1385.547356 1843.739213 1789.786125 1613.174947 1664.830614 2094.560089 1533.320903 1.084881878 1.288351055 0.990365385 0.903625167 1.202448365 1.167261284 1.052079146 1.085767898 1.366028523 1 10.58244395 SCDEPLTPPPHSPT(ph)SMLQLIHDPVSPR ddPTM_K562_Paclitaxel_30min_R1 2 SCDEPLTPPPHSPTSMLQLIHDPVSPR 27 0 Q9Y2K7-5;I3VM54;Q9Y2K7-4;Q9Y2K7-2;Q9Y2K7;Q9Y2K7-3 Q9Y2K7-5 KDM2A Lysine-specific demethylase 2A 1 SCDEPLTPPPHS(0.215)PT(0.393)S(0.393)MLQLIHDPVSPR;SCDEPLT(0.008)PPPHS(0.014)PT(0.489)S(0.489)MLQLIHDPVSPR 93.093 3.07E-06 172272000 3031.28 3017.93 3945.73 3239.36 2991.02 2679.33 2772.73 3341.81 3330.28 3933.57 TRUE FALSE 3073.727272 3347.437803 2949.581661 3031.601948 3398.447562 3154.471556 3298.841043 3057.902382 3650.168274 3131.906275 0.981423773 1.068818001 0.94178478 0.967973395 1.085105129 1.007204967 1.053301329 0.976370974 1.165478132 1 11.61282532 -6.750615181 24.99850188 1.044962946 0.992185903 0.192461024 0.057854863 397.3112421 917586.8415 0.016532469 0.021122045 1.78E-07 6.750615181 -0.052777044 SCFES(ph)SPDPELK ddPTM_K562_Paclitaxel_30min_R1 1 SCFESSPDPELK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SCFES(0.5)S(0.5)PDPELK 278.38 2.84E-120 761540000 14251 11211 24695 16216 11349 9845.3 10053 15082 9158.4 16715 TRUE FALSE 14450.55797 12435.05489 18460.44183 15175.97834 12894.92594 11591.22572 11960.50427 13800.68996 10038.10524 13308.47382 1.085816312 0.934371218 1.38711937 1.140324468 0.968925972 0.870965813 0.898713438 1.036985168 0.754264191 1 13.70005752 -6.840471394 4.116584676 0.914710675 1.14083883 0.41980638 0.125219181 0.222880188 7.202793606 0.040177104 0.046899738 1.44E-07 6.840471394 0.226128155 SCFESS(ph)PDPELK ddPTM_K562_Paclitaxel_30min_R1 3 SCFESSPDPELK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SCFES(0.151)S(0.849)PDPELK;SCFES(0.132)S(0.868)PDPELK;SCFES(0.012)S(0.988)PDPELK 266.78 3.57E-84 1146450000 17808.7 14927.3 32792 20376.5 15927.1 13067.1 13214 20481.9 13803 23375.2 TRUE FALSE 18058.07674 16557.11309 24513.25403 19069.64249 18096.64067 15384.36671 15721.28752 18741.83475 15128.83982 18611.32141 0.970273757 0.889625875 1.317115185 1.024625929 0.972345825 0.826613349 0.844716352 1.007012578 0.812883701 1 14.18389287 -6.909305391 3.272742758 0.895621433 1.058185355 0.263707759 0.119216411 0.33866325 7.242569729 0.039958815 0.045759407 1.23E-07 6.909305391 0.162563922 SCFESS(ph)PDPELKSR ddPTM_K562_Paclitaxel_30min_R1 2 SCFESSPDPELKSR 14 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.001)CFES(0.198)S(0.801)PDPELKSR;S(0.001)CFES(0.198)S(0.801)PDPELKSR 75.445 0.028652 118796000 5336.5 4083.1 9234.8 5218.9 4924.5 4033.3 3752.8 4998.8 10433.9 5634.2 TRUE FALSE 5411.227465 4528.906666 6903.360525 4884.183113 5595.300272 4748.549125 4464.874209 4574.120738 11436.12271 4485.946947 1.206262029 1.009576511 1.538885904 1.088774159 1.24729524 1.05853885 0.995302499 1.019655558 2.549321882 1 12.13119684 SCGHQTSAS(ph)SLK ddPTM_K562_Paclitaxel_30min_R1 3 SCGHQTSASSLK 12 0 Q9HB90 Q9HB90 RRAGC Ras-related GTP-binding protein C 1 SCGHQTSAS(0.5)S(0.5)LK;SCGHQTS(0.001)AS(0.5)S(0.5)LK;SCGHQT(0.009)S(0.016)AS(0.685)S(0.289)LK 128.21 0.001135 18036100 8755.9 7036.3 12759.4 9866.6 7789.4 7480.7 6522.6 9619.6 6432.6 11162.3 TRUE FALSE 8878.509614 7804.547029 9538.131664 9233.800437 8850.448156 8807.297111 7760.2293 8802.354936 7050.479972 8887.417133 0.998997738 0.878156939 1.073217508 1.038974575 0.995840301 0.990985005 0.873170369 0.990428918 0.793310347 1 13.11754849 -7.696825607 8.839669366 0.913534169 0.996355925 0.238812299 0.071552524 0.440728032 55.39016546 0.02678134 0.020682804 2.01E-08 7.696825607 0.082821756 SCGTDSQSENEAS(ph)PVKRPR ddPTM_K562_Paclitaxel_30min_R1 1 SCGTDSQSENEASPVKRPR 19 2 H0Y398;C9JQ48;Q9H8U3 H0Y398 ZFAND3 AN1-type zinc finger protein 3 1 SCGTDSQSENEAS(1)PVKRPR 81.317 0.0028815 13581000 3457 2720.3 5869.9 3872.7 2547.4 3005.3 2335.6 3527 2497 4691.1 TRUE FALSE 3505.408666 3017.311553 4387.971147 3624.322356 2894.399008 3538.247758 2778.767907 3227.359335 2736.848007 3735.051245 0.938516887 0.807836722 1.17480882 0.970354118 0.774928861 0.947309026 0.743970491 0.864073643 0.73274711 1 11.86691232 -6.741457685 23.17442676 0.83722206 0.97551413 0.231020305 0.114916331 149.0375976 172848.8909 0.033349237 0.04297434 1.81E-07 6.741457685 0.13829207 SCLAKGS(ph)PER ddPTM_K562_Paclitaxel_30min_R1 2 SCLAKGSPER 10 1 A0A0G2JHC2;Q6NYC8;Q6NYC8-3;Q6NYC8-4 A0A0G2JHC2 PPP1R18 Phostensin 1 SCLAKGS(1)PER;SCLAKGS(1)PER 154.1 0.00058321 51218000 4868 4015.2 8400.8 5542.3 4467.6 3524.7 3892.7 4623.6 4638.5 6950.9 TRUE FALSE 4936.167019 4453.593115 6279.91414 5186.841684 5076.162757 4149.756056 4631.319504 4230.79632 5084.04865 5534.302765 0.891922114 0.804725239 1.13472544 0.937216828 0.917218116 0.749824546 0.83683884 0.764467811 0.918643028 1 12.43418586 -7.028821433 16.55219795 0.837647 0.943729593 0.136102135 0.102232842 18.93784266 10875.4455 0.033497583 0.033731812 9.36E-08 7.028821433 0.106082593 SCLLEEEEES(ph)GEEAAEAME ddPTM_K562_Paclitaxel_30min_R1 2 SCLLEEEEESGEEAAEAME 19 0 Q969H6-2;Q969H6 Q969H6-2 POP5 Ribonuclease P/MRP protein subunit POP5 1 SCLLEEEEES(1)GEEAAEAME;SCLLEEEEES(1)GEEAAEAME 164.66 4.47E-12 53236000 4482.9 4632.3 6069.6 5375.5 4677.6 4316.8 4398.8 4425.7 4321.5 5084.5 TRUE FALSE 4545.674431 5138.070179 4537.254412 5030.73949 5314.768312 5082.323869 5233.449337 4049.709161 4736.599384 4048.276109 1.122866699 1.269199541 1.120786797 1.242686851 1.312847288 1.255429159 1.292759979 1.000353991 1.170028737 1 11.98309198 -8.260719403 24.99997958 1.06389352 1.232718408 0.531642591 0.074801125 51.84353479 1800263.602 0.037175643 0.019824853 5.49E-09 8.260719403 0.168824888 SCMLTGT(ph)PESVQSAK ddPTM_K562_Paclitaxel_30min_R1 1 SCMLTGTPESVQSAK 15 0 Q96AE4;E9PEB5;Q96AE4-2;C9JSZ1 Q96AE4 FUBP1 Far upstream element-binding protein 1 1 S(0.001)CMLT(0.206)GT(0.793)PESVQSAK 215.93 1.61E-18 18738000 3531.8 2962.2 6146.7 4445.6 2948.3 2756.3 3136.7 3873.3 3213.9 4759.1 TRUE FALSE 3581.256097 3285.623014 4594.889564 4160.479114 3349.908375 3245.091105 3731.87245 3544.238989 3522.609455 3789.192808 0.945123745 0.867103676 1.212630182 1.097985593 0.884069126 0.856406963 0.984872673 0.935354617 0.929646401 1 11.88767484 -6.769081841 24.99925488 0.927384179 1.032018821 0.211389141 0.093424008 288.9977142 945338.5752 0.030995333 0.035817748 1.70E-07 6.769081841 0.104634642 SCS(ph)ASCVPHGAK ddPTM_K562_Paclitaxel_30min_R1 1 SCSASCVPHGAK 12 0 P00519-2;P00519 P00519-2 ABL1 Tyrosine-protein kinase ABL1 1 S(0.091)CS(0.892)AS(0.017)CVPHGAK 91.712 0.012137 45431000 7258.5 6967.9 11124 6919.3 4909.5 5327.5 5599.1 7735.5 4645 9561.6 TRUE FALSE 7360.141394 7728.678886 8315.60862 6475.527068 5578.257019 6272.257323 6661.499996 7078.320992 5091.173004 7612.940672 0.966793479 1.015202826 1.092299149 0.850594711 0.732733547 0.823894155 0.875023238 0.929774879 0.668752487 1 12.89423812 -6.326655527 7.16460013 0.832797559 1.023467902 0.457969099 0.091868382 0.220178254 21.04843549 0.025215242 0.037624278 4.71E-07 6.326655527 0.190670344 SCS(ph)ASCVPHGAKDTEWR ddPTM_K562_Paclitaxel_30min_R1 2 SCSASCVPHGAKDTEWR 17 1 P00519-2;P00519 P00519-2 ABL1 Tyrosine-protein kinase ABL1 1 S(0.211)CS(0.785)AS(0.003)CVPHGAKDTEWR;S(0.223)CS(0.775)AS(0.002)CVPHGAKDTEWR 90.755 0.0042034 53320000 2663 1944.63 3849.3 2882.3 2201.2 2064.65 1630.22 2224.7 4234.1 3182.3 TRUE FALSE 2700.290216 2156.95128 2877.496607 2697.442179 2501.040707 2430.786688 1939.545735 2035.697849 4640.804223 2533.745513 1.065730636 0.85128963 1.135669148 1.064606593 0.987092308 0.95936497 0.765485612 0.80343422 1.831598398 1 11.30705591 -8.73878453 24.99990929 1.415800042 0.955384221 0.418769651 0.217576274 181.5460828 200339.595 0.138939002 0.052432905 1.82E-09 8.73878453 -0.460415821 SCS(ph)LDLGDAGCYGYAR ddPTM_K562_Paclitaxel_30min_R1 1 SCSLDLGDAGCYGYAR 16 0 Q6PJG9 Q6PJG9 LRFN4 Leucine-rich repeat and fibronectin type-III domain-containing protein 4 1 S(0.001)CS(0.999)LDLGDAGCYGYAR 131.86 5.21E-07 12503000 496.2 487.15 678.74 734.93 534.96 832.66 613.04 657.44 736.32 805.04 TRUE FALSE 503.1483309 540.3386844 507.3836925 687.7948792 607.8306089 980.3205599 729.3611397 601.5863684 807.046826 640.9724061 0.784976586 0.842998356 0.791584299 1.073049125 0.948294502 1.529427087 1.137897876 0.938552678 1.259097612 1 9.32411844 -6.474792804 1.735542219 1.158850268 0.80154445 0.450957397 0.162878071 0.33985627 2.044401836 0.054656259 0.093336783 3.35E-07 6.474792804 -0.357305818 SCSPSPVS(ph)PQVQPQAADTISDSVAVPASLLGMR ddPTM_K562_Paclitaxel_30min_R1 1 SCSPSPVSPQVQPQAADTISDSVAVPASLLGMR 33 0 Q9NQW6;Q9NQW6-2;C9JJT6 Q9NQW6 ANLN Actin-binding protein anillin 1 S(0.01)CS(0.033)PS(0.135)PVS(0.823)PQVQPQAADTISDSVAVPASLLGMR 126.01 5.30E-21 9751600 595.09 552.65 797.96 579.77 711.49 625.44 620.69 754.75 599.5 824.31 TRUE FALSE 603.423096 612.9901959 596.505129 542.5861472 808.4069836 736.3530024 738.4626873 690.6292765 657.0846536 656.3151695 0.919410558 0.933987548 0.90886994 0.826715841 1.231735942 1.121950302 1.12516474 1.052282971 1.001172431 1 9.358244969 -6.74975348 24.99999998 1.09481587 0.900700646 0.651257987 0.068535601 142.3708145 304576.7795 0.02101717 0.026904671 1.78E-07 6.74975348 -0.194115225 SCSS(ph)LAVVEK ddPTM_K562_Paclitaxel_30min_R1 1 SCSSLAVVEK 10 0 Q8IW36 Q8IW36 ZNF695 Zinc finger protein 695 1 S(0.178)CS(0.324)S(0.499)LAVVEK 108.9 0.0001605 0 62.205 0 0 0 0 0 0 0 0 0 TRUE FALSE 63.07606192 0 0 0 0 0 0 0 0 0 0 SCT(ph)PS(ph)PDQISHR ddPTM_K562_Paclitaxel_30min_R1 1 SCTPSPDQISHR 12 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 2 S(0.014)CT(0.987)PS(0.992)PDQIS(0.007)HR 107.93 0.013512 53131000 1899.8 2123.9 2783.6 2289.4 2067.6 1919.9 1508.8 2092.9 1971.9 2857.7 TRUE FALSE 1926.403061 2355.794585 2080.845753 2142.568131 2349.242125 2260.367308 1795.086924 1915.095082 2161.309806 2275.299171 0.846659237 1.035377947 0.914537209 0.941664357 1.032498123 0.993437407 0.788945448 0.84168935 0.949901372 1 11.15184054 -7.725509204 24.99922402 0.881941174 0.964390946 0.145068868 0.074972675 265.2938768 184583.8108 0.02796517 0.021660983 1.88E-08 7.725509204 0.082449772 SCTPS(ph)PDQISHR ddPTM_K562_Paclitaxel_30min_R1 5 SCTPSPDQISHR 12 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 SCT(0.001)PS(0.999)PDQISHR;SCTPS(1)PDQISHR;SCT(0.001)PS(0.999)PDQISHR;SCT(0.001)PS(0.999)PDQISHR;S(0.003)CT(0.002)PS(0.995)PDQISHR 129.29 0.00070176 287590000 9003.42 8764.14 11928.25 10810.46 9599.64 9212.48 8332.67 10424.56 8594.36 11534.74 TRUE FALSE 9129.495658 9721.038444 8916.815761 10117.12548 10907.27349 10846.18398 9913.750633 9538.92856 9419.886679 9183.953656 0.99407031 1.058480782 0.970912539 1.101608943 1.187644657 1.180992891 1.079464357 1.038651644 1.025689701 1 13.16489965 -2.068220829 18.28300909 1.070286202 0.005320374 0 0.071307383 0 0 0.01789899 0 0.00854632 2.068220829 -1.064965828 SCTPSPDQIS(ph)HRASLEDAPVDDLTR ddPTM_K562_Paclitaxel_30min_R1 1 SCTPSPDQISHRASLEDAPVDDLTR 25 1 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 S(0.001)CT(0.002)PS(0.019)PDQIS(0.77)HRAS(0.209)LEDAPVDDLTR 62.005 0.0043025 32402000 690.63 921.61 1104.2 840.62 827.27 922.29 815.1 651.92 768.57 880.42 TRUE FALSE 700.3009508 1022.234496 825.4310534 786.7063957 939.9581798 1085.845182 969.7609699 596.5353268 842.3945826 700.9899207 0.999017147 1.458272746 1.177522 1.122279183 1.340901134 1.549016826 1.383416425 0.850989878 1.201721391 1 9.45324989 -8.2507295 24.99202323 1.019766719 1.297664168 0.345517805 0.171628705 779.2110075 1818331.782 0.082820587 0.047197196 5.61E-09 8.2507295 0.277897449 SCTPSPDQISHRAS(ph)LEDAPVDDLTR ddPTM_K562_Paclitaxel_30min_R1 4 SCTPSPDQISHRASLEDAPVDDLTR 25 1 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 SCTPS(0.001)PDQIS(0.023)HRAS(0.977)LEDAPVDDLTR;SCTPSPDQIS(0.035)HRAS(0.965)LEDAPVDDLTR;SCTPS(0.004)PDQIS(0.248)HRAS(0.747)LEDAPVDDLTR;SCTPSPDQIS(0.005)HRAS(0.995)LEDAPVDDLTR 101.16 8.88E-06 291137000 3112.25 3284.34 3709.09 3216.73 2938.83 2811.43 3194.94 4230.53 3543.41 3903.96 TRUE FALSE 3155.831102 3642.935348 2772.684356 3010.423335 3339.148401 3309.997636 3801.163186 3871.12007 3883.770363 3108.330809 1.015281608 1.171990876 0.892017139 0.968501591 1.074257731 1.064879461 1.222895316 1.24540157 1.249471373 1 11.60192434 -7.637947279 3.47577202 1.200114877 1.024992119 0.364349179 0.095167977 0.23890706 5.621064186 0.038976077 0.029117864 2.30E-08 7.637947279 -0.175122757 SCTSDTKEAATQEDPEQLPELEAHGVS(ph)ESEGEERPVAEEEILLR ddPTM_K562_Paclitaxel_30min_R1 1 SCTSDTKEAATQEDPEQLPELEAHGVSESEGEERPVAEEEILLR 44 2 Q9BVJ6-3;Q9BVJ6;Q9BVJ6-2;X6RJY0 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 SCTSDTKEAAT(0.001)QEDPEQLPELEAHGVS(0.758)ES(0.241)EGEERPVAEEEILLR 45.666 0.00085725 34320000 2664.6 1728.4 3336.4 2304.7 2059.3 2021.7 1435.9 1709.6 2573.8 2517.5 TRUE FALSE 2701.912621 1917.112557 2494.084556 2156.886857 2339.811524 2380.220109 1708.354529 1564.358809 2821.02499 2004.432118 1.347969131 0.956436758 1.244284869 1.076058819 1.167318914 1.187478532 0.852288543 0.780449881 1.407393628 1 10.96897784 -7.734346401 24.99776165 0.99173706 1.15376097 0.141988119 0.18142035 403.4357742 372236.1377 0.066810114 0.051737833 1.84E-08 7.734346401 0.16202391 SCTVNIMFGT(ph)PQEHR ddPTM_K562_Paclitaxel_30min_R1 2 SCTVNIMFGTPQEHR 15 0 Q9HCD5 Q9HCD5 NCOA5 Nuclear receptor coactivator 5 1 SCTVNIMFGT(1)PQEHR;SCTVNIMFGT(1)PQEHR 134.87 1.57E-05 35497000 4743.7 4351.7 6532.8 4899.2 4479.6 4701.1 4702.6 5330.7 4320.9 5919.6 TRUE FALSE 4810.126436 4826.833323 4883.513843 4584.98724 5089.79736 5534.774078 5594.893801 4877.823762 4735.941751 4713.182271 1.020568728 1.024113443 1.036139399 0.972800748 1.079906753 1.174317852 1.187073506 1.034932129 1.004828899 1 12.20248576 -6.895474782 7.300977695 1.093165252 1.016130097 0.206791389 0.061365016 0.342038984 21.3106316 0.020492348 0.023291159 1.27E-07 6.895474782 -0.077035155 SDADSGFLGLRPT(ph)SVDPALRR ddPTM_K562_Paclitaxel_30min_R1 1 SDADSGFLGLRPTSVDPALRR 21 2 Q9NZM5 Q9NZM5 GLTSCR2 Glioma tumor suppressor candidate region gene 2 protein 1 SDADS(0.004)GFLGLRPT(0.498)S(0.498)VDPALRR 81.51 0.018647 30611000 2413 2590.6 3111.9 2702.6 1739.6 2279.6 2258.4 2294.7 1835.6 3358.7 TRUE FALSE 2446.789445 2873.450469 2326.262358 2529.267332 1976.562972 2683.855053 2686.91961 2099.750912 2011.917582 2674.195096 0.914962954 1.07451041 0.869892537 0.945805089 0.739124447 1.003612286 1.004758259 0.785189874 0.752345102 1 11.38488901 -5.784949984 24.99014939 0.885024003 0.994736731 0.146007591 0.103502267 379.2632605 403130.3273 0.027479085 0.057255087 1.64E-06 5.784949984 0.109712728 SDAEEDGGTVS(ph)QEEEDRKPK ddPTM_K562_Paclitaxel_30min_R1 1 SDAEEDGGTVSQEEEDRKPK 20 2 P27824-3;P27824;P27824-2 P27824-3 CANX Calnexin 1 SDAEEDGGT(0.006)VS(0.994)QEEEDRKPK 59.547 0.015842 37208000 1817.8 1109.1 4377.6 2239.2 1439.6 1026.1 926.95 1526.6 1099.9 2451.2 TRUE FALSE 1843.254808 1230.195289 3272.420739 2095.587734 1635.697893 1208.064428 1102.833923 1396.905801 1205.550309 1951.644095 0.944462576 0.630337925 1.67675077 1.073755066 0.838112798 0.618998326 0.565079425 0.715758475 0.617710121 1 10.93047427 -6.914321327 3.420963302 0.680132983 1.090924126 0.309091188 0.26503001 0.291716489 6.793095067 0.088874304 0.101449205 1.22E-07 6.914321327 0.410791144 SDANCS(ph)GEDAAPAEERDIPFKENY(ph)DVLSR ddPTM_K562_Paclitaxel_30min_R1 1 SDANCSGEDAAPAEERDIPFKENYDVLSR 29 2 K7EIQ0;K7ELZ7;A0A0C4DH11;K7ES91;A0A0A0MR93;Q53F39-2;Q53F39-3;Q53F39 K7EIQ0 MPPE1 Metallophosphoesterase 1 2 S(0.081)DANCS(0.919)GEDAAPAEERDIPFKENY(0.996)DVLS(0.004)R 46.862 0.023889 0 445.12 461.05 702.71 582.16 454.25 398.35 311.91 596.75 619.23 606.24 TRUE FALSE 451.3530533 511.3889982 525.3021695 544.8228633 516.1265405 468.9917794 371.0932942 546.0523627 678.7098083 482.6879552 0.935082486 1.059460864 1.088285224 1.128726867 1.069275781 0.971625197 0.768805789 1.13127406 1.406104712 1 8.914947017 -8.518395308 24.99581518 1.224931394 1.010044297 0.277755394 0.132237204 240.1860277 1339115.692 0.085175138 0.033972943 3.03E-09 8.518395308 -0.214887097 SDEEDEDS(ph)DFGEEQR ddPTM_K562_Paclitaxel_30min_R1 1 SDEEDEDSDFGEEQR 15 0 Q5VW52;Q9HCL2 Q5VW52 GPAM "Glycerol-3-phosphate acyltransferase 1, mitochondrial" 1 S(0.129)DEEDEDS(0.871)DFGEEQR 169.15 1.30E-05 8688200 730.32 631.8 1038.8 865.32 669.96 863.44 758.75 834.04 536.33 908.99 TRUE FALSE 740.5467332 700.7820606 776.5420923 809.8222482 761.2198945 1016.558961 902.7188516 763.1830961 587.8468929 723.737339 1.023225821 0.968282307 1.072961212 1.11894496 1.051790275 1.404596538 1.247301753 1.054502863 0.812237895 1 9.499322395 -8.570484397 6.673266087 0.911070807 1.127855025 0.330757777 0.124054013 0.261026983 27.179829 0.093598126 0.034883708 2.69E-09 8.570484397 0.216784218 SDFIDKAEES(ph)T(ph)QS(ph)KEISLPEVSLLK ddPTM_K562_Paclitaxel_30min_R1 1 SDFIDKAEESTQSKEISLPEVSLLK 25 2 Q2M3G0-1;Q2M3G0 Q2M3G0-1 ABCB5 ATP-binding cassette sub-family B member 5 3 S(0.634)DFIDKAEES(0.954)T(0.701)QS(0.701)KEIS(0.009)LPEVS(0.001)LLK 42.904 0.024821 44322000 724.33 795.85 771.91 871.75 733.67 814.77 736.81 867.39 785.76 834.83 TRUE FALSE 734.4728547 882.7435944 577.0317736 815.8398568 833.6082751 959.2580196 876.6158511 793.6998054 861.2357589 664.6911878 1.10498359 1.328050696 0.86812009 1.22739683 1.25412867 1.443163438 1.318831763 1.194088052 1.29569306 1 9.376540417 -6.505491648 24.78630753 1.27069656 1.110585898 0.165743908 0.147722248 1079.840916 1539375.455 0.040956392 0.059232732 3.12E-07 6.505491648 -0.160110663 SDGS(ph)LEDGDDVHR ddPTM_K562_Paclitaxel_30min_R1 1 SDGSLEDGDDVHR 13 0 Q9NRX5 Q9NRX5 SERINC1 Serine incorporator 1 1 S(0.326)DGS(0.674)LEDGDDVHR 97.273 0.010009 14639000 493 549.66 851.45 452.75 563.82 493.27 604.98 662.39 529.55 607.24 TRUE FALSE 499.903521 609.6737376 636.4909169 423.7126414 640.6218296 580.7445086 719.7717968 606.115835 580.4156436 483.4841547 1.033960506 1.261000452 1.316466963 0.876373377 1.325011013 1.201165546 1.488718482 1.253641571 1.200485348 1 8.917324799 SDGSGFGARLS(ph)PGSGGPEAQTAGPVTPASISGR ddPTM_K562_Paclitaxel_30min_R1 1 SDGSGFGARLSPGSGGPEAQTAGPVTPASISGR 33 1 O95613-2;O95613 O95613-2 PCNT Pericentrin 1 S(0.017)DGS(0.004)GFGARLS(0.966)PGS(0.012)GGPEAQTAGPVTPASISGR 80.751 2.02E-06 16459000 537.56 454.93 517.3 500.84 411.1 381.64 353.4 523.56 298.87 578 TRUE FALSE 545.0874985 504.6007959 386.7012171 468.7183641 467.09878 449.3184955 420.4558051 479.08031 327.5777989 460.2032827 1.184449392 1.096473699 0.840283483 1.01850287 1.01498359 0.976347871 0.913630608 1.041018889 0.711811087 1 8.846127464 -5.578265569 6.025360645 0.947264907 1.164296085 0.426571335 0.095202684 0.154138234 11.57601927 0.023216865 0.064454216 2.64E-06 5.578265569 0.217031178 SDHGNAFFPNSPSPFTPPPPQT(ph)PSPHGTRR ddPTM_K562_Paclitaxel_30min_R1 1 SDHGNAFFPNSPSPFTPPPPQTPSPHGTRR 30 1 G5E9C8;Q07889 G5E9C8 SOS1 Son of sevenless homolog 1 1 SDHGNAFFPNSPSPFT(0.001)PPPPQT(0.393)PS(0.393)PHGT(0.213)RR 79.122 1.77E-05 19841000 409.85 450.48 581.81 479.89 438.59 637.39 515.4 687.17 577.6 751.27 TRUE FALSE 415.5891645 499.6649298 434.9248698 449.1120033 498.3333834 750.4221671 613.1944594 628.7906193 633.0810608 598.1607616 0.694778379 0.835335518 0.727103644 0.750821572 0.83310945 1.254549304 1.025133206 1.051206732 1.058379455 1 9.224389465 -7.085758903 6.024619157 1.076937447 0.760055988 0.823119347 0.072470388 0.092316567 5.207261887 0.023355093 0.02350706 8.21E-08 7.085758903 -0.31688146 SDIS(ph)PLTPR ddPTM_K562_Paclitaxel_30min_R1 2 SDISPLTPR 9 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 S(0.008)DIS(0.992)PLTPR;S(0.001)DIS(0.997)PLT(0.002)PR 99.568 0.011311 60800000 3792.7 4261.8 5638.6 4353.5 4210.7 4165.8 3742.9 4484.6 3148.9 4544 TRUE FALSE 3845.809501 4727.117736 4215.065693 4074.285996 4784.268628 4904.546139 4453.095736 4103.605238 3451.365915 3617.930306 1.062986066 1.306580652 1.165048892 1.126137225 1.322377222 1.355622061 1.230840663 1.134241097 0.953961415 1 11.8209489 -8.583084712 3.108474247 0.97658887 1.229149027 0.559941929 0.086519131 0.193078419 3.623617671 0.072111033 0.023800383 2.61E-09 8.583084712 0.252560157 SDKS(ph)PDLAPTPAPQSTPR ddPTM_K562_Paclitaxel_30min_R1 2 SDKSPDLAPTPAPQSTPR 18 1 F8WAE5;Q9BY44-2;Q9BY44-4;Q9BY44-3;Q9BY44 F8WAE5 EIF2A "Eukaryotic translation initiation factor 2A;Eukaryotic translation initiation factor 2A, N-terminally processed" 1 S(0.01)DKS(0.988)PDLAPT(0.002)PAPQSTPR;S(0.123)DKS(0.877)PDLAPTPAPQSTPR 227.09 1.12E-32 36732000 4480.3 4008.3 8661.4 5476.5 3961.8 3413.9 3204.4 5128.7 4476.6 6293.4 TRUE FALSE 4543.038023 4445.939749 6474.722447 5125.261802 4501.464234 4019.307231 3812.418172 4692.984923 4906.597432 5010.801625 0.906648948 0.887271156 1.292153019 1.022842688 0.898352114 0.802128588 0.760839973 0.936573681 0.979204087 1 12.29082571 -6.768081925 5.276312171 0.880500885 1.037249052 0.206891733 0.123406113 0.260793232 21.32458029 0.040297074 0.048707085 1.71E-07 6.768081925 0.156748167 SDLDYIRS(ph)PLPFQNR ddPTM_K562_Paclitaxel_30min_R1 1 SDLDYIRSPLPFQNR 15 1 H7BYL6;A0A0A0MRF6;Q99996-5;Q99996-3;Q99996;Q99996-1;Q99996-6 H7BYL6 AKAP9 A-kinase anchor protein 9 1 SDLDYIRS(1)PLPFQNR 86.367 0.01245 9367100 1687 1744.3 1711.7 1758.2 1726.8 1388.3 1235.5 1693.4 1483.7 1978.6 TRUE FALSE 1710.623205 1934.748573 1279.560165 1645.436921 1962.019395 1634.495512 1469.929675 1549.5351 1626.216014 1575.360234 1.085861613 1.228130894 0.812233378 1.044482961 1.245441743 1.037537623 0.93307527 0.983606839 1.032282001 1 10.62146605 -7.526002664 24.84120106 0.985793698 1.080813915 0.138262373 0.112886019 197.7299159 1572300.207 0.044739887 0.034848511 2.98E-08 7.526002664 0.095020217 SDLNGLPS(ph)PVEER ddPTM_K562_Paclitaxel_30min_R1 1 SDLNGLPSPVEER 13 0 E7EWN3;Q9C0A6 E7EWN3 SETD5 SET domain-containing protein 5 1 SDLNGLPS(1)PVEER 160.93 0.00071344 8238900 1516.3 1277.6 1543.1 1150.5 1106.3 1081.3 1022.8 1435.4 1142.1 1585.4 TRUE FALSE 1537.532878 1417.092689 1153.52532 1076.712079 1256.99679 1273.053373 1216.870961 1313.453811 1251.803808 1262.29461 1.218045983 1.12263229 0.913832089 0.852980018 0.995803024 1.008523179 0.964015018 1.040528733 0.991689102 1 10.30183295 -5.589745986 4.337378232 0.970661253 1.199633633 0.720156016 0.051166325 0.107359015 3.882133975 0.01467813 0.04484817 2.57E-06 5.589745986 0.22897238 SDLSS(ph)SSGSLSLSHGSSSLEHR ddPTM_K562_Paclitaxel_30min_R1 1 SDLSSSSGSLSLSHGSSSLEHR 22 0 H0YAN8;O15013-7;O15013-4;O15013-5;O15013-6;O15013 H0YAN8 ARHGEF10 Rho guanine nucleotide exchange factor 10 1 S(0.004)DLS(0.072)S(0.337)S(0.286)S(0.286)GS(0.014)LS(0.001)LSHGSSSLEHR 68.639 0.004824 7533100 1018.3 718.26 1109.4 1091.6 818.44 1062.2 774.77 1047.6 928.1 1007.4 TRUE FALSE 1032.559342 796.6820558 829.3182491 1021.589662 929.9253843 1250.566256 921.7785629 958.5998411 1017.248152 802.091327 1.287333882 0.993256041 1.033944915 1.273657534 1.159375938 1.559132001 1.149218963 1.195125553 1.268244797 1 9.647622703 -4.927184582 20.65161138 1.192556228 4.310631084 0.034454005 0.158627124 2320.862804 684009.654 0.039206052 13064.88564 1.18E-05 4.927184582 3.118074856 SDNSDIRPS(ph)GSPPPPTLPASPSNHVSSLPPFIAPPGR ddPTM_K562_Paclitaxel_30min_R1 1 SDNSDIRPSGSPPPPTLPASPSNHVSSLPPFIAPPGR 37 1 H7BY37;Q8NEZ4-2;Q8NEZ4;Q8NEZ4-3 H7BY37 KMT2C Histone-lysine N-methyltransferase 2C 1 S(0.051)DNS(0.051)DIRPS(0.502)GS(0.389)PPPPT(0.006)LPASPSNHVSSLPPFIAPPGR 65.418 6.68E-06 14189000 1000.2 1149.7 1330.6 1136.3 763.61 1006.1 989.62 1168.8 863.04 1253.9 TRUE FALSE 1014.205886 1275.228134 994.6735733 1063.422804 867.62661 1184.517709 1177.395229 1069.503145 945.9388482 998.3544917 1.015877521 1.277329991 0.996313015 1.065175559 0.86905665 1.186470055 1.179335836 1.071265922 0.947497964 1 9.963408363 -8.584579879 0.0111673 3.56E-07 2.102184542 0.046972812 0.113986728 3011.90913 32.66580891 3083.88772 3059.170034 2.60E-09 8.584579879 2.102184186 SDNSDIRPSGS(ph)PPPPT(ph)LPASPSNHVSSLPPFIAPPGR ddPTM_K562_Paclitaxel_30min_R1 1 SDNSDIRPSGSPPPPTLPASPSNHVSSLPPFIAPPGR 37 1 H7BY37;Q8NEZ4-2;Q8NEZ4;Q8NEZ4-3 H7BY37 KMT2C Histone-lysine N-methyltransferase 2C 2 S(0.001)DNS(0.02)DIRPS(0.217)GS(0.763)PPPPT(0.984)LPAS(0.013)PS(0.002)NHVSSLPPFIAPPGR 73.247 3.31E-07 21949000 1378.3 1747.9 1846.2 1508.2 1195 1405.6 1495.2 1497.5 1231.5 1901.1 TRUE FALSE 1397.600452 1938.741633 1380.103976 1411.470802 1357.779232 1654.863424 1778.906395 1370.278028 1349.791077 1513.654776 0.923328406 1.280834747 0.911769314 0.932491889 0.897020412 1.093289864 1.175239178 0.905277775 0.891743017 1 10.56382049 -5.813541965 24.99999745 0.979421934 1.102091379 0.151332088 0.119328864 168.9183556 81050.04756 0.031824485 0.066248069 1.54E-06 5.813541965 0.122669445 SDPLGS(ph)TQDHALSQESSEPGCR ddPTM_K562_Paclitaxel_30min_R1 1 SDPLGSTQDHALSQESSEPGCR 22 0 Q5VZL5-2;Q5VZL5-4;Q5VZL5;H7C1I7;Q5VZL5-3 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 SDPLGS(0.578)T(0.421)QDHALSQESSEPGCR 134.04 2.09E-11 10107000 797.37 774.8 1109.8 726.22 568.99 599.76 548.6 828.3 727.83 956.17 TRUE FALSE 808.5356401 859.3952842 829.6172642 679.6434996 646.4960711 706.119015 652.6939861 757.9307449 797.7413235 761.3020291 1.062043196 1.128849328 1.089734734 0.892738327 0.849197882 0.927514952 0.857339086 0.995571686 1.047864439 1 9.572325113 -6.250987484 23.31278931 0.930845948 1.097073165 0.564817345 0.06203923 207.9433249 463811.0769 0.017979896 0.030655616 5.61E-07 6.250987484 0.166227217 SDPLGST(ph)QDHALSQESSEPGCR ddPTM_K562_Paclitaxel_30min_R1 1 SDPLGSTQDHALSQESSEPGCR 22 0 Q5VZL5-2;Q5VZL5-4;Q5VZL5;H7C1I7;Q5VZL5-3 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 S(0.003)DPLGS(0.077)T(0.92)QDHALSQESSEPGCR 136.81 1.08E-11 12441000 697.16 724.59 823.75 762.41 630.75 490.58 491.85 816.9 637.89 877.76 TRUE FALSE 706.9223909 803.7031866 615.7841245 713.512435 716.6688287 577.5774749 585.1759699 747.4992461 699.1621847 698.8720302 1.011519077 1.150000504 0.881111417 1.02094862 1.025465032 0.826442396 0.837314908 1.069579571 1.000415175 1 9.448884499 -5.759911438 24.99995191 0.955842211 1.080759782 0.251905383 0.084808812 54.97031594 899333.8703 0.022898388 0.054366585 1.74E-06 5.759911438 0.124917571 SDS(ph)FENPVLQQHFR ddPTM_K562_Paclitaxel_30min_R1 1 SDSFENPVLQQHFR 14 0 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 1 S(0.043)DS(0.957)FENPVLQQHFR 151.39 5.70E-05 36279000 3333.5 3301.2 5617.7 4119.9 3827.8 3553.5 2484.6 3424.7 1306.8 2955.1 TRUE FALSE 3380.179285 3661.63618 4199.442156 3855.668054 4349.211165 4183.663331 2956.03988 3133.750359 1432.323979 2352.848998 1.436632477 1.556256344 1.784832839 1.638723121 1.848487161 1.778126576 1.256366168 1.331896081 0.60876154 1 11.20019302 -8.298605355 1.59229925 0.844969803 1.671985732 0.747487986 0.186708211 0.195962257 0.891195353 0.148432256 0.055935567 5.03E-09 8.298605355 0.827015929 SDS(ph)GGSSSEPFDR ddPTM_K562_Paclitaxel_30min_R1 2 SDSGGSSSEPFDR 13 0 P48634-2;P48634-3;P48634;P48634-4 P48634-2 PRRC2A Protein PRRC2A 1 S(0.07)DS(0.825)GGS(0.103)S(0.001)S(0.001)EPFDR;S(0.001)DS(0.998)GGS(0.001)SSEPFDR 185.2 0.00018353 53631000 1650.84 1650.4 2371.23 1752.21 1592.26 1652.04 1469.54 1915.11 1320.04 2275.04 TRUE FALSE 1673.956853 1830.596253 1772.583659 1639.831093 1809.152769 1945.006098 1748.377543 1752.409452 1446.83574 1811.385599 0.924130596 1.010605502 0.978578863 0.905291007 0.998767336 1.07376701 0.965215548 0.967441418 0.798745303 1 10.82287798 -8.552206608 24.99966798 0.893946097 0.981026249 0.201686851 0.062713682 296.0001561 252311.1829 0.040940976 0.015474632 2.80E-09 8.552206608 0.087080152 SDS(ph)PEIPFQAAAGPSDGLDASSPGNSFVGLR ddPTM_K562_Paclitaxel_30min_R1 2 SDSPEIPFQAAAGPSDGLDASSPGNSFVGLR 31 0 A6NNK5;Q12888;Q12888-3;Q12888-2 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 S(0.247)DS(0.753)PEIPFQAAAGPSDGLDASSPGNSFVGLR;S(0.224)DS(0.776)PEIPFQAAAGPSDGLDASSPGNSFVGLR 137.91 1.21E-25 81567000 6659.3 7002.7 8894.9 8243.1 5364.7 5606.9 6871.4 9478.6 6929.6 10438.7 TRUE FALSE 6752.550746 7767.278468 6649.272484 7714.424461 6095.462965 6601.20499 8175.212279 8673.333766 7595.219042 8311.28721 0.812455469 0.93454579 0.800029203 0.928186485 0.73339578 0.794245804 0.983627695 1.043560828 0.913843891 1 13.02085622 -7.772943897 24.40833494 0.988888255 0.83657877 0.571986641 0.064123335 123.7749503 262601.3975 0.026616323 0.018127186 1.69E-08 7.772943897 -0.152309485 SDS(ph)RAQAVSEDAGGNEGR ddPTM_K562_Paclitaxel_30min_R1 3 SDSRAQAVSEDAGGNEGR 18 1 P55884-2;P55884;C9JZG1 P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B 1 S(0.003)DS(0.997)RAQAVSEDAGGNEGR;S(0.166)DS(0.834)RAQAVSEDAGGNEGR;S(0.002)DS(0.998)RAQAVSEDAGGNEGR 122.1 2.81E-05 250911800 3249.2 2681.79 3293.27 2755.87 2067.96 2653.49 2226.09 3718.56 4109.08 4236.64 TRUE FALSE 3294.698825 2974.596901 2461.843258 2579.120833 2349.651163 3124.049195 2648.478957 3402.645117 4503.775494 3373.210442 0.976724957 0.881829626 0.72982202 0.764589366 0.696562282 0.926135279 0.785150823 1.008726012 1.335159952 1 11.71990661 -8.479928204 4.182736605 1.172835413 0.820328716 0.607701715 0.111843389 0.133023962 5.009963171 0.071381717 0.029395769 3.31E-09 8.479928204 -0.352506697 SDS(ph)SADCQWLDTLR ddPTM_K562_Paclitaxel_30min_R1 1 SDSSADCQWLDTLR 14 0 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 S(0.079)DS(0.593)S(0.328)ADCQWLDTLR 79.804 0.02869 0 690.83 538.86 737.57 635.11 615.82 517.44 435.73 783.81 734.2 837.49 TRUE FALSE 700.5037514 597.6945571 551.3613313 594.3768872 699.7051099 609.2007188 518.4074928 717.2204481 804.7231905 666.8090783 1.050531215 0.89635036 0.826865364 0.891374918 1.049333509 0.913605916 0.777445163 1.075600905 1.206826986 1 9.381129936 -8.446535288 8.060945627 1.115900221 0.915498185 0.440606673 0.092590236 0.263999614 25.42384935 0.051305099 0.024400116 3.58E-09 8.446535288 -0.200402036 SDS(ph)VSASER ddPTM_K562_Paclitaxel_30min_R1 1 SDSVSASER 9 0 O43719 O43719 HTATSF1 HIV Tat-specific factor 1 1 S(0.079)DS(0.917)VS(0.004)ASER 100.82 0.0030147 0 1786.8 1683.2 2133.7 1714 1710.6 1416.4 1654.5 1913.3 1706.7 1934.6 TRUE FALSE 1811.820713 1866.977468 1595.021046 1604.071712 1943.612681 1667.578653 1968.432738 1750.753223 1870.636161 1540.327458 1.176256843 1.212065304 1.035507766 1.041383573 1.26181785 1.082613079 1.277931344 1.136611058 1.214440573 1 10.58902137 SDSDMWINQSSSLDS(ph)STSSQEHLNHSSK ddPTM_K562_Paclitaxel_30min_R1 1 SDSDMWINQSSSLDSSTSSQEHLNHSSK 28 0 A8MQ02;J3KN01;P55196;P55196-5;P55196-3;P55196-1;Q5TIG5;P55196-2;P55196-6 A8MQ02 MLLT4 Afadin 1 SDSDMWINQS(0.001)S(0.008)S(0.008)LDS(0.282)S(0.106)T(0.282)S(0.282)S(0.029)QEHLNHSSK 72.286 0.00019303 16400000 1173.4 1030.5 2247.1 1682.2 1192.7 1158.2 941.14 1550.4 947.17 1736 TRUE FALSE 1189.83122 1143.013475 1679.791813 1574.311221 1355.165933 1363.590508 1119.716402 1418.683843 1038.149911 1382.202247 0.860822808 0.82695096 1.215301029 1.138987601 0.980439683 0.986534721 0.810095921 1.026393819 0.751083941 1 10.43275301 -7.567289857 12.53281735 0.898924594 1.010791477 0.132928073 0.131026593 2.197248282 615.7151648 0.05244334 0.040624554 2.71E-08 7.567289857 0.111866883 SDSDMWINQSSSLDSST(ph)SSQEHLNHSSK ddPTM_K562_Paclitaxel_30min_R1 1 SDSDMWINQSSSLDSSTSSQEHLNHSSK 28 0 A8MQ02;J3KN01;P55196;P55196-5;P55196-3;P55196-1;Q5TIG5;P55196-2;P55196-6 A8MQ02 MLLT4 Afadin 1 SDSDMWINQSS(0.001)S(0.001)LDS(0.065)S(0.065)T(0.289)S(0.289)S(0.289)QEHLNHSSK 79.558 4.10E-05 16298000 910.2 1173.8 1969.3 1271.5 1347.9 959.98 861.67 1156.9 954.47 1553 TRUE FALSE 922.9456082 1301.959454 1472.125859 1189.951681 1531.5068 1130.218974 1025.167384 1058.614124 1046.151108 1236.497748 0.746419159 1.052941225 1.19056089 0.962356529 1.238584383 0.914048551 0.829089569 0.856139145 0.846059858 1 10.2720439 -7.502728228 24.20022591 0.87093875 1.046553922 0.241572956 0.131935866 659.7365534 792327.8731 0.046365947 0.040343842 3.14E-08 7.502728228 0.175615172 SDSFENPVLQQHFR ddPTM_K562_Paclitaxel_30min_R1 3 SDSFENPVLQQHFR 14 0 B1AHC9;P12956-2;P12956 B1AHC9 XRCC6 X-ray repair cross-complementing protein 6 0 ;; 184.98 4.18E-06 32331300 4863 4937.9 6097.6 5759.6 4681.9 4649.8 4910.9 5668 5272.5 7178.9 FALSE TRUE 4931.097004 5477.036621 4558.185466 5390.205035 5319.654045 5474.376744 5842.717638 5186.468021 5778.947183 5715.836239 0.862707887 0.958221403 0.797466071 0.943029998 0.930686924 0.957756051 1.022198222 0.907385692 1.011041419 1 12.48074887 -6.837292285 1.614880579 0.97647184 0.882637737 0.438507035 0.04941665 0.370564971 2.000892995 0.017684102 0.022377163 1.45E-07 6.837292285 -0.093834103 SDSIRPALNSPVERPS(ph)SDQEEGETSAQTER ddPTM_K562_Paclitaxel_30min_R1 1 SDSIRPALNSPVERPSSDQEEGETSAQTER 30 2 H3BRK9;R4GNG2;Q9UKV5 H3BRK9;R4GNG2 AMFR E3 ubiquitin-protein ligase AMFR 1 SDS(0.001)IRPALNS(0.004)PVERPS(0.572)S(0.42)DQEEGET(0.001)S(0.001)AQTER 57.009 0.00098356 55191000 151.42 113.34 247.27 166.56 215.05 244.34 117.51 163.73 151.84 197.18 TRUE FALSE 153.5403472 125.7148445 184.8436303 155.8775871 244.3434508 287.6702683 139.8069091 149.8201145 166.4249104 156.9946078 0.977997584 0.800758996 1.177388402 0.992884974 1.556381167 1.832357636 0.890520452 0.954301021 1.060067685 1 7.294571198 -5.804518864 8.25192068 1.201266356 0.889801731 0.144336449 0.283204464 0.443018828 75.98212001 0.081393097 0.172383568 1.57E-06 5.804518864 -0.311464625 SDSIRPALNSPVERPS(ph)SDQEEGETSAQTERVPLDLSPR ddPTM_K562_Paclitaxel_30min_R1 1 SDSIRPALNSPVERPSSDQEEGETSAQTERVPLDLSPR 38 3 R4GNG2;Q9UKV5 R4GNG2 AMFR E3 ubiquitin-protein ligase AMFR 1 S(0.012)DS(0.033)IRPALNS(0.012)PVERPS(0.468)S(0.468)DQEEGET(0.003)S(0.003)AQT(0.003)ERVPLDLSPR 48.847 0.0027249 33500000 283.02 253.27 528.88 308.87 388.06 320.96 351.83 338.18 528.04 264.54 TRUE FALSE 286.9831532 280.9228751 395.3577029 289.0604607 440.9203419 377.8777495 418.5879058 309.4494981 578.7606013 210.6266028 1.362520923 1.333748308 1.877054929 1.372383435 2.093374417 1.794064684 1.987345854 1.46918525 2.747803904 1 7.718543854 -5.753886195 0.898960664 1.858848564 1.21064037 0.117813007 0.447884542 2.250356002 2.344454388 0.15795342 1.243070701 1.76E-06 5.753886195 -0.648208194 SDSIRPALNSPVERPSS(ph)DQEEGETSAQTER ddPTM_K562_Paclitaxel_30min_R1 1 SDSIRPALNSPVERPSSDQEEGETSAQTER 30 2 H3BRK9;R4GNG2;Q9UKV5 H3BRK9;R4GNG2 AMFR E3 ubiquitin-protein ligase AMFR 1 SDSIRPALNS(0.02)PVERPS(0.231)S(0.744)DQEEGET(0.003)S(0.002)AQTER 63.703 0.0048684 23157000 571.3 558.28 834.45 709.8 490.5 497.45 458.64 539.48 578.65 667.64 TRUE FALSE 579.2999626 619.2348984 623.7827772 664.2766049 557.3144042 585.665773 545.6645457 493.6478067 634.231918 531.5746015 1.089781116 1.164906857 1.173462343 1.249639473 1.048421807 1.101756501 1.026506052 0.928651981 1.193119303 1 9.054128364 -6.790448469 24.02399799 1.047613959 1.169409867 0.389843214 0.073336683 138.4149835 114627.9911 0.022436353 0.025445666 1.62E-07 6.790448469 0.121795908 SDSVLPASHGHLPQAGS(ph)LER ddPTM_K562_Paclitaxel_30min_R1 3 SDSVLPASHGHLPQAGSLER 20 0 Q8N4C8-5;Q8N4C8-2;Q8N4C8-3;Q8N4C8-4;Q8N4C8 Q8N4C8-5 MINK1 Misshapen-like kinase 1 1 SDSVLPASHGHLPQAGS(1)LER;SDSVLPASHGHLPQAGS(1)LER;SDSVLPASHGHLPQAGS(1)LER 143.29 3.10E-13 180499000 5875 6273 8197.4 6894.6 6643.3 5799.9 6076.6 6998.3 7910.9 8443.2 TRUE FALSE 5957.268126 6957.907354 6127.864986 6452.411215 7548.229932 6828.43083 7229.603128 6403.750733 8670.777292 6722.471205 0.886172353 1.035022262 0.911549458 0.959827275 1.122835591 1.015762005 1.075438318 0.952588793 1.289819923 1 12.71477596 -6.700964962 8.614180876 1.07056627 0.951193783 0.313366622 0.092529499 0.3744705 48.57429725 0.02582227 0.033289511 1.99E-07 6.700964962 -0.119372487 SDTPEVHPPLPIS(ph)QSPENESNDRR ddPTM_K562_Paclitaxel_30min_R1 1 SDTPEVHPPLPISQSPENESNDRR 24 1 Q03164-2;Q03164;Q03164-3;A0A3B3ITZ1;E9PR05 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 SDTPEVHPPLPIS(0.497)QS(0.497)PENES(0.006)NDRR 54.605 0.0091212 106080000 1289.7 1860 2286.1 2039.3 1355.9 1465.2 1524.9 2246.3 1492.9 1946.4 TRUE FALSE 1307.759779 2063.08109 1708.945781 1908.508426 1540.596536 1725.032648 1814.241814 2055.462794 1636.299715 1549.722612 0.843867005 1.3312583 1.102743012 1.231516151 0.994111155 1.113123494 1.170688097 1.326342391 1.055866194 1 10.59779429 -7.758216186 22.71091701 1.165419379 1.114067527 0 0.146213012 125.9961883 887812.2338 0.055013257 0.04072997 1.74E-08 7.758216186 -0.051351852 SDTPEVHPPLPISQSPENES(ph)NDRR ddPTM_K562_Paclitaxel_30min_R1 1 SDTPEVHPPLPISQSPENESNDRR 24 1 Q03164-2;Q03164;Q03164-3;A0A3B3ITZ1;E9PR05 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 SDTPEVHPPLPIS(0.173)QS(0.173)PENES(0.655)NDRR 50.232 0.014849 72264000 1035.2 909.17 1281.7 1296.1 979.09 939.6 822.39 925.66 1022.4 1402.4 TRUE FALSE 1049.695994 1008.436255 958.1189831 1212.973947 1112.458634 1106.224867 978.4342093 847.0194052 1120.606088 1116.59011 0.940090714 0.903139161 0.858075828 1.086319802 0.996299917 0.990717057 0.876269815 0.758576847 1.003596645 1 10.12488397 -10.16417093 10.00635277 1.000000683 0.932607523 0.047411998 0.087201106 0 0 0.089394894 0.021681446 6.85E-11 10.16417093 -0.06739316 SDVLELTDDNFESR ddPTM_K562_Paclitaxel_30min_R1 1 SDVLELTDDNFESR 14 0 H7BZJ3 H7BZJ3 PDIA3 0 154.1 0.00075969 15891000 841.67 805.4 1188.4 880.94 831.18 687.25 717.2 874.8 733.51 1023 FALSE TRUE 853.4559768 893.3362957 888.3737221 824.4404513 944.400788 809.124138 853.284956 800.4802797 803.9669129 814.5120385 1.0478126 1.096774822 1.090682126 1.0121894 1.159468177 0.993385119 1.047602633 0.982772804 0.987053444 1 9.669792212 -7.320011039 24.99999478 1.003926033 1.078912938 0.508320257 0.038900251 227.8743252 97262.12326 0.013155755 0.011602288 4.79E-08 7.320011039 0.074986905 SEAAAPHT(ph)DAGGGLS(ph)SDEEEGTSSQAEAAR ddPTM_K562_Paclitaxel_30min_R1 1 SEAAAPHTDAGGGLSSDEEEGTSSQAEAAR 30 0 Q01831-2;Q01831 Q01831-2 XPC DNA repair protein complementing XP-C cells 2 S(0.014)EAAAPHT(0.796)DAGGGLS(0.585)S(0.584)DEEEGT(0.01)S(0.006)S(0.006)QAEAAR 52.054 0.013307 9092200 1097.7 1052.7 1234.3 1436.7 1211.9 1021.3 1013.2 1286.3 1157.6 1360.3 TRUE FALSE 1113.071187 1167.637346 922.6856994 1344.556492 1376.981298 1202.413215 1205.449411 1177.020786 1268.792652 1083.070113 1.027700029 1.078081032 0.851916869 1.241430703 1.271368567 1.110189636 1.112992959 1.086744775 1.171477854 1 10.08091092 -6.273263032 24.9972712 1.148496223 0.995117473 0.383808053 0.090169753 768.3524249 1624430.035 0.025814328 0.038631761 5.33E-07 6.273263032 -0.153378749 SEAAAPHTDAGGGLS(ph)S(ph)DEEEGTSSQAEAAR ddPTM_K562_Paclitaxel_30min_R1 2 SEAAAPHTDAGGGLSSDEEEGTSSQAEAAR 30 0 Q01831-2;Q01831 Q01831-2 XPC DNA repair protein complementing XP-C cells 2 SEAAAPHTDAGGGLS(0.998)S(0.998)DEEEGT(0.003)S(0.001)SQAEAAR;SEAAAPHTDAGGGLS(1)S(1)DEEEGTSSQAEAAR 152.88 2.68E-32 300500000 4688.2 4626.4 6453.9 5016.3 4411.8 4185.3 3909.29 5283.5 4247.6 5374.5 TRUE FALSE 4753.849264 5131.525997 4824.533124 4694.57697 5012.761852 4927.50419 4651.05737 4834.633696 4655.600959 4279.17395 1.110926856 1.199186118 1.127444965 1.097075516 1.171432129 1.15150827 1.086905422 1.129805367 1.087967214 1 12.06311661 -9.686605628 0.449852372 0.986643755 1.146916907 0.64324863 0.03106279 1.710026258 0.566410514 0.07492719 0.018827409 2.06E-10 9.686605628 0.160273153 SEAAGSPDQGSTYS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 4 SEAAGSPDQGSTYSPAR 17 0 Q96S66-4;Q96S66-3;Q96S66-2;Q96S66 Q96S66-4 CLCC1 Chloride channel CLIC-like protein 1 1 SEAAGSPDQGSTYS(1)PAR;SEAAGSPDQGSTYS(1)PAR;SEAAGSPDQGSTYS(1)PAR;SEAAGSPDQGSTYS(0.999)PAR 296.79 3.17E-177 121610000 14733.5 14816.6 19120.8 17573.3 15265.7 14016.6 14315.2 16083.4 13007.1 18290 TRUE FALSE 14939.81446 16434.32649 14293.51756 16446.22719 17345.14679 16502.24721 17031.43447 14717.01478 14256.49007 14562.48796 1.025910854 1.128538375 0.981529914 1.129355591 1.191084026 1.133202462 1.169541531 1.010611293 0.978987252 1 13.82996924 -8.399074496 6.102043254 0.991382054 1.10903822 0.429686397 0.05934746 0.236303916 10.6698809 0.03524694 0.016532383 3.99E-09 8.399074496 0.117656166 SEAGHASS(ph)PDSEVTSLCQK ddPTM_K562_Paclitaxel_30min_R1 3 SEAGHASSPDSEVTSLCQK 19 0 Q6NZY4-2;Q6NZY4 Q6NZY4-2 ZCCHC8 Zinc finger CCHC domain-containing protein 8 1 S(0.001)EAGHAS(0.062)S(0.9)PDS(0.036)EVTSLCQK;S(0.001)EAGHAS(0.083)S(0.915)PDSEVTSLCQK;S(0.004)EAGHAS(0.108)S(0.888)PDSEVTSLCQK 105.02 0.0010868 33766000 3925.85 3760.63 6420.6 4534.63 3671.68 3383.96 3563.29 4454.65 3833.73 5327.86 TRUE FALSE 3980.824012 4171.228301 4799.640121 4243.799128 4171.824978 3984.057793 4239.405676 4076.199677 4201.976896 4242.039207 0.938422258 0.983307343 1.131446431 1.000414876 0.983448001 0.939184576 0.999379183 0.960905706 0.990555884 1 12.05054224 -6.650011777 4.525497866 0.976084992 1.021572619 0.108145664 0.048529817 0.433413616 15.17722708 0.015213424 0.019779202 2.24E-07 6.650011777 0.045487627 SEAHLTELLEEICDR ddPTM_K562_Paclitaxel_30min_R1 2 SEAHLTELLEEICDR 15 0 Q9Y2B0;F8W1K5;F8VXJ7;F8W031 Q9Y2B0 CNPY2 Protein canopy homolog 2 0 ; 138.55 2.79E-06 17740100 6689.6 6990.6 7426.2 7211.4 5864.1 6209.2 6221.1 7886.4 7446.9 7620.3 FALSE TRUE 6783.275039 7753.857349 5551.363964 6748.893081 6662.8897 7310.314439 7401.521249 7216.401095 8162.208019 6067.278677 1.118009473 1.277979431 0.914967691 1.112342689 1.098167738 1.204875337 1.21990791 1.189396677 1.345283191 1 12.56683386 -7.263845668 22.44188677 1.205480891 1.103871705 0.124389504 0.11337402 99.32022683 926283.9774 0.038112166 0.035252422 5.45E-08 7.263845668 -0.101609186 SEAIT(ph)ALDT(ph)LK ddPTM_K562_Paclitaxel_30min_R1 1 SEAITALDTLK 11 0 Q8IY51 Q8IY51 TIGD4 Tigger transposable element-derived protein 4 2 S(0.002)EAIT(0.998)ALDT(1)LK 54.276 0.031086 3791200 1271.9 777.67 1016.8 1368.8 995.28 917.98 1088.1 830.26 1381 1123.5 TRUE FALSE 1289.710524 862.5786405 760.0962644 1281.011295 1130.853986 1080.770864 1294.561295 759.7242307 1513.65122 894.5300833 1.441774344 0.96428131 0.849715709 1.432049428 1.264187764 1.208199572 1.447197047 0.849299811 1.692118855 1 9.804986191 -6.272489921 24.95077082 1.26866839 1.073159526 0.094292642 0.262157194 1558.64916 3519235.814 0.069923856 0.104847227 5.34E-07 6.272489921 -0.195508864 SEAPAEVTHFS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 3 SEAPAEVTHFSPK 13 0 Q6PID6 Q6PID6 TTC33 Tetratricopeptide repeat protein 33 1 SEAPAEVT(0.051)HFS(0.949)PK;SEAPAEVT(0.001)HFS(0.999)PK;SEAPAEVT(0.096)HFS(0.904)PK 105.63 0.0043003 82316000 10638.7 7849.6 18245.6 11606 8320.9 8253.2 7295.9 10612.2 8450.6 13841 TRUE FALSE 10787.67462 8706.645874 13639.27262 10861.64311 9454.347454 9716.789139 8680.258938 9710.627371 9262.317888 11020.1966 0.978900378 0.790062663 1.23766146 0.985612462 0.857910961 0.881725571 0.787668247 0.881166437 0.840485721 1 13.42786234 -6.73500957 6.427637028 0.864704526 1.001275944 0.220932039 0.112501931 0.253756666 34.16727886 0.033873429 0.04270531 1.84E-07 6.73500957 0.136571418 SECDS(ph)SPEPK ddPTM_K562_Paclitaxel_30min_R1 1 SECDSSPEPK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SECDS(0.5)S(0.5)PEPK 107.03 0.0060931 4884900 3785.5 3567.2 7382.7 4753.6 3386.3 3160.3 2828.5 4255.7 4339 5724.9 TRUE FALSE 3838.508679 3956.678959 5518.846077 4448.725372 3847.571391 3720.734832 3365.193109 3894.151722 4755.780337 4558.162238 0.842117608 0.868042591 1.210761221 0.975991011 0.844105846 0.816279597 0.738278485 0.854324949 1.043354775 1 12.15423656 -6.749310947 17.4472612 0.864895762 0.983540985 0.103783682 0.124123608 11.65007422 16753.58499 0.038672497 0.049105746 1.78E-07 6.749310947 0.118645223 SECQDMSLSS(ph)PTSVLGGSR ddPTM_K562_Paclitaxel_30min_R1 2 SECQDMSLSSPTSVLGGSR 19 0 O95613-2;O95613 O95613-2 PCNT Pericentrin 1 SECQDMSLS(0.002)S(0.998)PTSVLGGSR;SECQDMS(0.001)LS(0.07)S(0.911)PT(0.014)S(0.004)VLGGSR 206.59 4.52E-23 96085000 2150.52 1850.21 2935 2701.4 2320.6 2264.03 2149.97 2409.42 1838.05 2724.4 TRUE FALSE 2180.633915 2052.222185 2194.02295 2528.144295 2636.705008 2665.523932 2557.915584 2204.724732 2014.602915 2169.165785 1.005286885 0.946088215 1.01145932 1.165491505 1.215538723 1.228824441 1.179216269 1.016392914 0.928745479 1 11.0829246 -6.109368695 4.962114104 1.117988247 0.976279951 0.240281177 0.094741427 0.31013619 11.52210729 0.028639695 0.051476807 7.77E-07 6.109368695 -0.141708296 SEDADRCTLPEHES(ph)PSQDISDACEAESTER ddPTM_K562_Paclitaxel_30min_R1 2 SEDADRCTLPEHESPSQDISDACEAESTER 30 1 Q32MZ4-3;Q32MZ4-2;Q32MZ4 Q32MZ4-3 LRRFIP1 Leucine-rich repeat flightless-interacting protein 1 1 SEDADRCT(0.101)LPEHES(0.834)PS(0.055)QDIS(0.008)DACEAES(0.001)TER;SEDADRCT(0.02)LPEHES(0.947)PS(0.033)QDIS(0.001)DACEAESTER 83.647 1.02E-06 102703000 1080.73 884.51 1300.49 1041.77 980.44 862.37 883.26 1230.12 901.89 1169.07 TRUE FALSE 1095.863554 981.083793 972.1652152 974.955535 1113.992527 1015.299211 1050.853974 1125.613628 988.5205643 930.8128923 1.17731884 1.054007525 1.044426032 1.047423755 1.196795335 1.090766168 1.128963708 1.209280229 1.06199707 1 9.862347383 -5.234232174 22.47469167 1.100582339 1.177319256 0.123615353 0.064597401 5255.040394 4340689.306 0.016285608 1.093882517 5.83E-06 5.234232174 0.076736917 SEDDSAKFDS(ph)NEEDSASVFSPSFGLK ddPTM_K562_Paclitaxel_30min_R1 1 SEDDSAKFDSNEEDSASVFSPSFGLK 26 1 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 1 SEDDS(0.001)AKFDS(0.932)NEEDS(0.049)AS(0.018)VFS(0.001)PSFGLK 80.031 8.09E-05 52345000 1386.3 1011.5 3790.2 1735.6 1173.8 1007.3 872.54 1940 1543.3 2619.8 TRUE FALSE 1405.712477 1121.938991 2833.317133 1624.286384 1333.691433 1185.930512 1038.09991 1775.184891 1691.540861 2085.883322 0.673917118 0.537872363 1.358329636 0.778704335 0.639389279 0.568550743 0.497678801 0.851047071 0.810947018 1 11.02644274 -2.174102505 18.57816026 0.760580041 0.048276074 0 0.245655203 0 0 0.058033118 0 0.006697265 2.174102505 -0.712303967 SEDDSAKFDSNEEDSAS(ph)VFSPSFGLK ddPTM_K562_Paclitaxel_30min_R1 1 SEDDSAKFDSNEEDSASVFSPSFGLK 26 1 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 1 SEDDSAKFDS(0.172)NEEDS(0.317)AS(0.504)VFS(0.006)PSFGLK 92.39 3.38E-05 55990000 2028.5 1355.2 4515.6 1727.8 1288.6 1137.2 1306.2 2610.1 1727.3 3586.1 TRUE FALSE 2056.905258 1503.165319 3375.580932 1616.986641 1464.129136 1338.866453 1554.044631 2388.355713 1893.214883 2855.250852 0.720393887 0.526456482 1.182236205 0.566320343 0.512784765 0.468913774 0.544276042 0.836478417 0.663064291 1 11.47940179 -9.509343352 1.154416168 0.99910997 0.658394575 0.196291079 0.201183938 3.675948096 6.615834242 0.202114842 0.061861735 3.09E-10 9.509343352 -0.340715394 SEDEDS(ph)LEEAGSPAPGPCPR ddPTM_K562_Paclitaxel_30min_R1 1 SEDEDSLEEAGSPAPGPCPR 20 0 Q8TBB5-2;Q8TBB5-3;Q8TBB5 Q8TBB5-2 KLHDC4 Kelch domain-containing protein 4 1 S(0.001)EDEDS(0.999)LEEAGSPAPGPCPR 139.12 1.53E-13 13049000 333.48 557.64 597.57 635.67 414.33 565.83 333.27 557.48 414.72 687.98 TRUE FALSE 338.1497489 618.525021 446.7060628 594.9009714 470.7687607 666.1720059 396.5062427 510.1185943 454.555709 547.7692984 0.617321471 1.129170662 0.815500365 1.086042926 0.859428891 1.216154333 0.723856273 0.931265399 0.82983057 1 9.097424597 -5.239766211 24.08289624 0.950187383 0.617320903 0.321015169 0.147023382 4021.877704 4468940.374 0.034164325 1.511829817 5.76E-06 5.239766211 -0.33286648 SEDFSLPAYMDRR ddPTM_K562_Paclitaxel_30min_R1 2 SEDFSLPAYMDRR 13 1 H3BNI5;Q86WV2;H3BN72;H3BNV9;P13073 H3BNI5 COX4I1 "Cytochrome c oxidase subunit 4 isoform 1, mitochondrial" 0 ; 158.25 0.00046293 73623000 6482.6 5976.9 7693.8 7028.5 5049.7 5987.1 6114 6743.6 6704.7 8053.3 FALSE TRUE 6573.376401 6629.478155 5751.405034 6577.723468 5737.554632 7048.828122 7274.099583 6170.689088 7348.716392 6412.033039 1.02516259 1.033912039 0.896970586 1.025840545 0.894810522 1.099312508 1.134445119 0.962360775 1.146082116 1 12.64656614 -7.284012946 24.93291799 1.070212969 0.977045102 0.308978914 0.069566683 970.9696745 1072450.095 0.023621031 0.020846705 5.20E-08 7.284012946 -0.093167867 SEDMPFS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 SEDMPFSPK 9 0 A6NNK5;Q12888;Q12888-3;Q12888-2;C9JXV0 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 S(0.003)EDMPFS(0.997)PK;SEDMPFS(1)PK 123.01 0.0021112 84727000 9897.5 8268.4 17408.5 10611.2 8021.9 7471.4 7741.5 10245.4 8753.9 13453.2 TRUE FALSE 10036.09554 9171.171874 13013.50887 9930.645126 9114.618592 8796.347886 9210.409212 9374.98932 9594.751208 10711.43046 0.936951939 0.856204212 1.214917926 0.927107277 0.850924499 0.821211315 0.85986734 0.875232245 0.895748822 1 13.38686354 -6.516691712 24.93175023 0.874695225 1.001870964 0.234546023 0.095190631 362.9074156 1462402.681 0.027796107 0.037177119 3.04E-07 6.516691712 0.127175738 SEDPPTT(ph)PIR ddPTM_K562_Paclitaxel_30min_R1 2 SEDPPTTPIR 10 0 A6NNK5;Q12888;Q12888-3;Q12888-2;C9JXV0;H7C151 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 S(0.002)EDPPT(0.005)T(0.993)PIR;SEDPPT(0.138)T(0.862)PIR 128.01 0.0029973 112165000 11564.6 11352.9 14011.4 12661.6 11717.1 10044.9 11236.4 13496.9 7675.5 14538.2 TRUE FALSE 11726.54008 12592.44802 10474.04878 11849.54165 13313.16739 11826.22198 13368.44824 12350.2541 8412.76607 11575.30686 1.013065159 1.087871636 0.904861435 1.023691362 1.150135159 1.021676757 1.154910915 1.066948311 0.726785577 1 13.49876282 -8.73460014 24.99600743 0.863392714 1.053754371 0.406329148 0.091619073 177.6335198 165435.0024 0.060343571 0.022794425 1.84E-09 8.73460014 0.190361657 SEEAHAEDSVMDHHFR ddPTM_K562_Paclitaxel_30min_R1 6 SEEAHAEDSVMDHHFR 16 0 Q8NC51-4;Q8NC51-3;Q8NC51-2;Q8NC51 Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 ;;;;; 236.05 6.62E-41 177268400 19631.6 20930.4 26831.7 25161.7 21420.4 19401.7 20380.9 25796.4 17718.7 27675.3 FALSE TRUE 19906.50297 23215.65185 20057.70548 23547.94118 24338.22113 22842.31908 24248.06938 23604.8348 19420.6603 22035.05867 0.903401405 1.053577946 0.910263312 1.068657975 1.104522638 1.036635274 1.100431351 1.071239934 0.881352784 1 14.42751312 -5.254640002 23.61670497 1.030368568 0.903401274 0.202321869 0.071885564 580.6032897 2016527.389 0.017985538 0.164993112 5.56E-06 5.254640002 -0.126967293 SEEET(ph)SPLVTHQNPAGPVASAPELESK ddPTM_K562_Paclitaxel_30min_R1 2 SEEETSPLVTHQNPAGPVASAPELESK 27 0 P43007-2;P43007 P43007-2 SLC1A4 Neutral amino acid transporter A 1 S(0.106)EEET(0.394)S(0.394)PLVT(0.106)HQNPAGPVASAPELESK;S(0.269)EEET(0.325)S(0.325)PLVT(0.08)HQNPAGPVASAPELESK 89.266 4.37E-06 41496000 2612.51 2689 6133 3266.4 2763.3 2650.8 2426.15 3826 2174.96 3879.8 TRUE FALSE 2649.0932 2982.594114 4584.648298 3056.907724 3139.708243 3120.882161 2886.499297 3500.957419 2383.874626 3089.09463 0.857562981 0.965523712 1.484139804 0.989580472 1.016384611 1.010290242 0.934415951 1.133327993 0.771706571 1 11.59296835 -6.463498952 24.99985225 0.985559445 1.113410104 0.095058019 0.172256562 618.2694724 260300.3514 0.049003345 0.072683568 3.44E-07 6.463498952 0.127850659 SEES(ph)PVYSNSSVR ddPTM_K562_Paclitaxel_30min_R1 1 SEESPVYSNSSVR 13 0 H0Y8J2;Q03188 H0Y8J2 CENPC Centromere protein C 1 S(0.081)EES(0.919)PVYSNSSVR 246.63 2.91E-55 33974000 1642.5 1652.7 2322 2301.1 1538.3 1866.4 1691.2 2128.3 1581.8 2357.8 TRUE FALSE 1665.500068 1833.147375 1735.782382 2153.517745 1747.842504 2197.379834 2012.096371 1947.487631 1733.738958 1877.279066 0.887188324 0.976491673 0.924626718 1.147148437 0.931050975 1.170513151 1.071815271 1.037399109 0.923538215 1 10.87442741 -6.217427074 24.99723131 1.043965616 0.934141115 0.296483452 0.077944732 577.8194552 328177.8076 0.020587189 0.035657819 6.06E-07 6.217427074 -0.109824501 SEFLS(ph)T(ph)APRS(ph)LRKR ddPTM_K562_Paclitaxel_30min_R1 1 SEFLSTAPRSLRKR 14 3 Q13416 Q13416 ORC2 Origin recognition complex subunit 2 3 S(0.141)EFLS(0.975)T(0.884)APRS(1)LRKR 65.105 0.029181 21027000 1571.9 1439.2 1810.2 1511.8 1400.6 1337.5 1131.9 1308.1 1028.8 1459.9 TRUE FALSE 1593.91145 1596.336723 1353.192622 1414.839915 1591.385432 1574.686846 1346.672116 1196.96874 1127.620837 1162.371579 1.371258106 1.373344593 1.164165269 1.217201057 1.369084948 1.354718985 1.158555612 1.029764287 0.970103586 1 10.18285562 -8.086293276 2.53949519 0.99366578 1.302838956 0.804809944 0.068018876 0.140057623 1.754697979 0.042461764 0.02198299 8.20E-09 8.086293276 0.309173176 SEGS(ph)PVLPHEPAK ddPTM_K562_Paclitaxel_30min_R1 1 SEGSPVLPHEPAK 13 0 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 S(0.009)EGS(0.991)PVLPHEPAK 118.2 0.0017784 62579000 7100.7 6307.6 13475 8605 5956.8 5352.8 5004.7 7604.7 5449.8 9281.3 TRUE FALSE 7200.131708 6996.285099 10073.06959 8053.113815 6768.217009 6302.043923 5954.315699 6958.633268 5973.27764 7389.765965 0.974338259 0.946753271 1.363110772 1.089765745 0.915890576 0.85280697 0.805751593 0.941658139 0.808317566 1 12.85131296 -6.800452965 4.326279333 0.875225725 1.103776547 0.424406344 0.117759802 0.199950851 8.144832315 0.038266776 0.045447887 1.58E-07 6.800452965 0.228550823 SEKGLS(ph)SQSSK ddPTM_K562_Paclitaxel_30min_R1 1 SEKGLSSQSSK 11 1 Q8N7X0 Q8N7X0 ADGB Androglobin 1 SEKGLS(0.306)S(0.306)QS(0.306)S(0.083)K 84.198 0.019799 4542200 3284.5 3393.7 3900.8 3542.3 3481.7 3327.8 3688.1 3950.2 3196.8 4613.5 TRUE FALSE 3330.493134 3764.235643 2915.994796 3315.112733 3955.966486 3917.938605 4387.897722 3614.605854 3503.866924 3673.266168 0.906684401 1.024765283 0.793842499 0.902497282 1.076961566 1.06660896 1.194549352 0.984030476 0.95388321 1 11.84284772 -6.757019823 24.98630847 1.053664481 0.907283984 0.414945656 0.080584142 112.9500225 638567.6635 0.025237992 0.031463379 1.75E-07 6.757019823 -0.146380497 SELISS(ph)T(ph)FK ddPTM_K562_Paclitaxel_30min_R1 1 SELISSTFK 9 0 H0YHG7;Q92730 H0YHG7 RND1 Rho-related GTP-binding protein Rho6 2 SELIS(0.003)S(0.999)T(0.998)FK 110.54 0.012253 3303500 928.31 1058.1 1627.9 1137.2 1271.7 1063.8 1107.1 1275.3 629.06 1206.1 TRUE FALSE 941.3092041 1173.626936 1216.916511 1064.265082 1444.92707 1252.449994 1317.166446 1166.955305 689.4840237 960.296158 0.980228023 1.222151028 1.267230428 1.108267562 1.504668178 1.304233057 1.371625237 1.215203555 0.717991026 1 9.907335595 -8.688196739 6.959769022 0.861831602 1.258590145 0.524479703 0.14756367 0.15145799 11.54984983 0.103075388 0.037813463 2.05E-09 8.688196739 0.396758543 SELS(ph)PVAR ddPTM_K562_Paclitaxel_30min_R1 1 SELSPVAR 8 0 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 S(0.002)ELS(0.998)PVAR 93.598 0.015428 24223000 1799.2 1701.6 2078.3 1632.8 1697.9 1506.7 1575.4 2106.9 1676.6 2171.8 TRUE FALSE 1824.394351 1887.386442 1553.607461 1528.079516 1929.182726 1773.89209 1874.323926 1927.905694 1837.644921 1729.185968 1.055059655 1.09148841 0.898461756 0.883698772 1.115659485 1.025853854 1.083934268 1.114920969 1.06272255 1 10.75587732 -6.787928693 24.99999947 1.071699119 0.9840053 0.275473381 0.067271058 311.7574457 294227.7272 0.022415583 0.025424308 1.63E-07 6.787928693 -0.087693819 SELSGRTTRTDGSSVGGTFSRATT(ph)LS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SELSGRTTRTDGSSVGGTFSRATTLSR 27 3 P83369 P83369 LSM11 U7 snRNA-associated Sm-like protein LSm11 2 S(0.003)ELS(0.001)GRT(0.001)T(0.003)RT(0.004)DGS(0.004)S(0.004)VGGT(0.008)FS(0.057)RAT(0.479)T(0.513)LS(0.923)R 41.483 0.026602 23619000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 SELSQDAEPAGS(ph)QETK ddPTM_K562_Paclitaxel_30min_R1 1 SELSQDAEPAGSQETK 16 0 Q9BVJ6-3;Q9BVJ6;Q9BVJ6-2;X6RJY0 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 SELSQDAEPAGS(0.999)QET(0.001)K 90.379 0.010275 9154300 1911.6 1390.1 3111.9 2083.8 1959.8 1898.2 1349.5 2025.5 1323.3 2366.3 TRUE FALSE 1938.368298 1541.875819 2326.262358 1950.154395 2226.75794 2234.819118 1605.56058 1853.421132 1450.408878 1884.046761 1.028832372 0.818385112 1.234715828 1.035088107 1.181901631 1.186180282 0.852187224 0.983744762 0.769836985 1 10.87961906 -7.77360049 24.93633082 0.900087613 1.07842731 0.33257178 0.124476651 277.5816828 569175.1476 0.052864099 0.035944533 1.68E-08 7.77360049 0.178339697 SELSQDAEPAGSQET(ph)KDSGSQEVLSELR ddPTM_K562_Paclitaxel_30min_R1 1 SELSQDAEPAGSQETKDSGSQEVLSELR 28 1 Q9BVJ6-3;Q9BVJ6;Q9BVJ6-2;X6RJY0 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 1 SELSQDAEPAGS(0.21)QET(0.698)KDS(0.019)GS(0.073)QEVLSELR 98.377 4.01E-07 17549000 695.18 559.59 1050.9 670.88 494.52 527.06 405.57 743.11 801.66 813.2 TRUE FALSE 704.9146648 620.6879286 785.5872976 627.8527595 561.8819963 620.5266907 482.5247903 679.9781672 878.6630249 647.4693936 1.088722759 0.958636709 1.213319588 0.969702608 0.867812443 0.958387681 0.745247258 1.050208973 1.35707268 1 9.338668187 -11.5643226 3.000567162 0.999442914 1.011489627 0 0.163252767 137338944.7 73909462.17 574567.2148 0.042102661 2.73E-12 11.5643226 0.012046713 SEPHS(ph)PGIPEIFR ddPTM_K562_Paclitaxel_30min_R1 4 SEPHSPGIPEIFR 13 0 Q9UJJ2;Q8ND82 Q9UJJ2 ZNF280C Zinc finger protein 280C 1 SEPHS(1)PGIPEIFR;S(0.002)EPHS(0.998)PGIPEIFR;SEPHS(1)PGIPEIFR;SEPHS(1)PGIPEIFR 124.43 0.00078156 58737800 15503.2 14637.5 18987 16737.2 14778.1 13781.5 14661.4 15823.3 12081 17882.5 TRUE FALSE 15720.29263 16235.67175 14193.49702 15663.7509 16791.12742 16225.45552 17443.32411 14479.0119 13241.43403 14238.03668 1.104105361 1.140302705 0.996871783 1.100134187 1.179314802 1.139585175 1.225121448 1.01692475 0.930004208 1 13.7974626 -8.482441805 8.212480529 0.967515813 1.123544166 0.575972782 0.057796834 0.218923284 41.87774289 0.034389491 0.016068969 3.29E-09 8.482441805 0.156028352 SEPRPPIS(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 1 SEPRPPISSPR 11 1 Q6WKZ4;E7EX40;Q6WKZ4-2;Q6WKZ4-3 Q6WKZ4 RAB11FIP1 Rab11 family-interacting protein 1 1 SEPRPPIS(0.5)S(0.5)PR 88.224 0.014321 13910000 2762.6 2713.6 3313 3377 2734 2530.2 2793.4 3280.3 2286.3 3724.2 TRUE FALSE 2801.284923 3009.880025 2476.592175 3160.414335 3106.417087 2978.895444 3323.433067 3001.61804 2505.90933 2965.205996 0.944718487 1.015066079 0.83521758 1.065832977 1.047622692 1.004616694 1.120810181 1.012279769 0.845104635 1 11.53391662 -5.247997208 21.9878 0.997688488 0.944718312 0.027779844 0.085172124 1842.866566 3014138.706 0.021608444 0.34931712 5.65E-06 5.247997208 -0.052970176 SEPSGEINIDS(ph)SGETVGSGER ddPTM_K562_Paclitaxel_30min_R1 1 SEPSGEINIDSSGETVGSGER 21 0 P42695;E9PKK4;G3V1A9 P42695 NCAPD3 Condensin-2 complex subunit D3 1 SEPSGEINIDS(0.824)S(0.12)GET(0.037)VGS(0.018)GER 65.765 0.019056 0 170.15 131.32 245.16 310.21 174.89 53.663 279.5 260.38 325.7 323.49 TRUE FALSE 172.532625 145.6579617 183.2663259 290.314519 198.7129789 63.17937958 332.5336659 238.2590938 356.9849403 257.5625604 0.669866865 0.565524591 0.711541016 1.127161178 0.771513447 0.245297218 1.291079206 0.925053289 1.386012546 1 8.008779087 -7.791671498 24.99999889 1.144290831 0.702202 0.482432262 0.237240783 199.9446142 165339.3436 0.101497929 0.068439337 1.62E-08 7.791671498 -0.442088831 SEQYLTLSGAHDLS(ph)ESELDVAGLQSR ddPTM_K562_Paclitaxel_30min_R1 2 SEQYLTLSGAHDLSESELDVAGLQSR 26 0 O43182-4;O43182 O43182-4 ARHGAP6 Rho GTPase-activating protein 6 1 SEQYLTLSGAHDLS(0.919)ES(0.081)ELDVAGLQSR;SEQYLT(0.001)LS(0.132)GAHDLS(0.842)ES(0.025)ELDVAGLQSR 143.96 2.82E-20 117725000 3037.5 2599.33 3296.1 2494.8 2334.55 2636.01 2734 3129.7 3504.4 3778.1 TRUE FALSE 3080.034371 2883.13364 2463.958789 2334.794694 2652.555234 3103.469362 3252.762228 2863.81245 3841.013278 3008.121146 1.023906359 0.958449976 0.819102247 0.776163785 0.881798008 1.031696933 1.081326871 0.952026967 1.27688118 1 11.55464695 -7.342988818 3.767234851 1.071428665 0.884672421 0.434277253 0.10139566 0.242020691 6.537554671 0.038111492 0.033616282 4.54E-08 7.342988818 -0.186756244 SES(ph)HTDLTFSR ddPTM_K562_Paclitaxel_30min_R1 1 SESHTDLTFSR 11 0 O15226;O15226-2 O15226 NKRF NF-kappa-B-repressing factor 1 S(0.003)ES(0.99)HT(0.002)DLTFS(0.005)R 87.641 0.021679 9663000 861.83 804.54 971.23 858.15 784.73 820.35 784.06 771.27 620.65 901.73 TRUE FALSE 873.898279 892.382398 726.0309745 803.1120999 891.6235116 965.8275542 932.8312919 705.7457994 680.2662056 717.956931 1.217201536 1.242946978 1.01124586 1.118607628 1.24188997 1.345244419 1.299285865 0.982991833 0.947502804 1 9.487753492 -8.279067505 22.8489432 0.973935313 1.207276973 0.596314845 0.08821569 221.1257182 286611.1982 0.054679591 0.02639696 5.26E-09 8.279067505 0.23334166 SES(ph)LIDASEDSQLEAAIR ddPTM_K562_Paclitaxel_30min_R1 1 SESLIDASEDSQLEAAIR 18 0 C9JAT7;O94888 C9JAT7 UBXN7 UBX domain-containing protein 7 1 S(0.022)ES(0.978)LIDASEDSQLEAAIR 149.09 3.32E-30 0 436.54 350.42 376.44 553.07 327.72 219.83 430.24 488.64 410.82 571.89 TRUE FALSE 442.6529068 388.6800406 281.4030662 517.5985656 372.3610123 258.8137639 511.875794 447.126982 450.2810966 455.3385041 0.972140293 0.853606794 0.618008501 1.136733575 0.817767461 0.568398591 1.124165405 0.981966115 0.988893082 1 8.830795651 -7.806298104 24.99991339 1.022253272 0.833001987 0.275360743 0.15560333 193.4469576 107806.8405 0.065749235 0.044328345 1.56E-08 7.806298104 -0.189251284 SES(ph)LSNCSIGK ddPTM_K562_Paclitaxel_30min_R1 2 SESLSNCSIGK 11 0 A0A3B3ISP1;Q92625 A0A3B3ISP1 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 S(0.053)ES(0.946)LS(0.001)NCSIGK;S(0.077)ES(0.901)LS(0.007)NCS(0.015)IGK 171.26 9.91E-05 27187000 2355.2 2166.89 4193 2920.8 2372.9 1986.5 1809.66 2662.6 2286.6 3575.2 TRUE FALSE 2388.180066 2403.478378 3134.425292 2733.472961 2696.129154 2338.777883 2153.033538 2436.395511 2506.238147 2846.572278 0.838966952 0.844341244 1.101122679 0.960268244 0.947149375 0.821611979 0.756360046 0.855905023 0.88044072 1 11.47501002 -7.252950177 23.63514288 0.847201149 0.943404324 0.139865695 0.089066933 503.3732943 1401462.152 0.030732619 0.030211845 5.59E-08 7.252950177 0.096203175 SES(ph)PDHMVSQYQQALEEIER ddPTM_K562_Paclitaxel_30min_R1 1 SESPDHMVSQYQQALEEIER 20 0 Q14149;H0YHQ4;H0YIR5 Q14149 MORC3 MORC family CW-type zinc finger protein 3 1 S(0.115)ES(0.885)PDHMVSQYQQALEEIER 185.55 1.40E-16 10459000 1665.3 1447.1 2148 1402.1 1336.4 1136.7 1275.7 1840 952.51 2246.5 TRUE FALSE 1688.619338 1605.099272 1605.710834 1312.175582 1518.440305 1338.277785 1517.757415 1683.680515 1044.002841 1788.662067 0.944068401 0.897374245 0.897716155 0.733607318 0.848925201 0.748200462 0.848543413 0.941307219 0.58367808 1 10.80466513 -6.081830894 8.304831722 0.812489502 0.915069123 0.147616321 0.108742556 0.585122068 54.45306537 0.027709425 0.048269505 8.28E-07 6.081830894 0.102579621 SES(ph)PFRETEPLVSPHQDK ddPTM_K562_Paclitaxel_30min_R1 1 SESPFRETEPLVSPHQDK 18 1 Q9BYW2;C9JG86;H7C3H4;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 S(0.208)ES(0.704)PFRET(0.088)EPLVSPHQDK 65.438 0.02382 11938000 846.32 911.67 1142.9 834.24 830.6 894.4 913.49 1110.6 715.44 1067.9 TRUE FALSE 858.1710911 1011.209214 854.3607598 780.7355803 943.7417822 1053.009282 1086.819959 1016.247598 784.1612087 850.2613938 1.009302665 1.189292165 1.004821301 0.918230071 1.109943118 1.238453598 1.278218636 1.195217853 0.922258983 1 9.731762623 -6.990064293 24.92904449 1.151348922 1.036701565 0.114432781 0.118356565 383.6048973 962471.0401 0.037988131 0.043029282 1.02E-07 6.990064293 -0.114647356 SES(ph)PIPVAEQGTLMR ddPTM_K562_Paclitaxel_30min_R1 1 SESPIPVAEQGTLMR 15 0 P86452 P86452 ZBED6 Zinc finger BED domain-containing protein 6 1 S(0.163)ES(0.837)PIPVAEQGTLMR 97.836 0.0062671 11979000 450.32 439.75 483.27 364.28 334.66 454.7 312.17 368.62 286.82 546.33 TRUE FALSE 456.6258694 487.7633921 361.2625115 340.9167113 380.2463578 535.3346607 371.4026279 337.3034301 314.3703425 434.9876461 1.049744455 1.121327 0.830512118 0.783738836 0.874154384 1.230689344 0.853823393 0.775432206 0.722710967 1 8.764830618 -7.981578516 24.99952591 0.812368383 0.973530978 0.190728922 0.143088119 392.2378717 532299.3282 0.063350157 0.042702554 1.04E-08 7.981578516 0.161162595 SES(ph)PKEPEQLR ddPTM_K562_Paclitaxel_30min_R1 3 SESPKEPEQLR 11 1 F8W6I7;P09651-3;P09651-2;P09651;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 S(0.037)ES(0.963)PKEPEQLR;S(0.009)ES(0.991)PKEPEQLR;SES(1)PKEPEQLR 123.28 0.0064836 388620000 8105 6604.1 15150.2 9043.8 6608.8 5768.4 5530.5 9047 5845.9 11231.2 TRUE FALSE 8218.495006 7325.157972 11325.34463 8463.771147 7509.030448 6791.344748 6579.883504 8278.40088 6407.424815 8942.275275 0.919060838 0.81916042 1.266494744 0.946489667 0.839722578 0.759464962 0.735817597 0.925760014 0.716531824 1 13.12642624 -6.714981448 4.160059735 0.816425002 1.000309894 0.256002577 0.132936809 0.280729783 10.19394127 0.04071187 0.051712008 1.93E-07 6.714981448 0.183884892 SES(ph)PKEPEQLRK ddPTM_K562_Paclitaxel_30min_R1 2 SESPKEPEQLRK 12 2 F8W6I7;P09651-3;P09651-2;P09651;F8VTQ5;F8W646 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 1 SES(1)PKEPEQLRK;S(0.07)ES(0.93)PKEPEQLRK 134.88 0.0017652 30363000 6097 4601.2 15475.9 7787.4 4527.1 3506.3 3383.9 6924.3 4611 9509.2 TRUE FALSE 6182.376811 5103.574576 11568.81764 7287.951019 5143.767664 4128.093074 4025.97736 6336.037495 5053.907152 7571.21982 0.816562847 0.674075604 1.527999175 0.962586108 0.679384272 0.545234873 0.53174752 0.836858214 0.667515575 1 12.88631004 -6.727842061 5.63029477 0.684176133 1.014146718 0.246177405 0.242019228 0.247114483 20.58358272 0.074987173 0.094824284 1.87E-07 6.727842061 0.329970585 SES(ph)PPAELPSLR ddPTM_K562_Paclitaxel_30min_R1 3 SESPPAELPSLR 12 0 H7C1L9;G5E9G6;Q14669;Q14669-2;Q14669-3 H7C1L9 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 SES(1)PPAELPSLR;S(0.122)ES(0.878)PPAELPSLR;SES(1)PPAELPSLR 162.93 0.00012432 106535000 5777.5 6091.5 8582.3 6659.5 5735.3 5503.2 5327.9 6057.3 4939.3 7077.5 TRUE FALSE 5858.402825 6756.59057 6415.59222 6232.389477 6516.544959 6479.115251 6338.841211 5542.694557 5413.741834 5635.101615 1.039626829 1.199018408 1.138505152 1.10599416 1.156420133 1.149777891 1.124884988 0.983601528 0.960717695 1 12.46022591 -8.255962757 4.97745838 0.977287996 1.135004974 0.75041476 0.039399414 0.081670844 6.328391124 0.019759461 0.01017496 5.55E-09 8.255962757 0.157716978 SES(ph)PPAELPSLRR ddPTM_K562_Paclitaxel_30min_R1 2 SESPPAELPSLRR 13 1 H7C1L9;G5E9G6;Q14669;Q14669-2;Q14669-3 H7C1L9 TRIP12 E3 ubiquitin-protein ligase TRIP12 1 S(0.188)ES(0.812)PPAELPSLRR;S(0.189)ES(0.811)PPAELPSLRR 96.247 0.0065527 167997000 3279.7 2980.5 4084.2 3532 3208.2 3534.2 2551.9 3571.4 2998.7 3975.9 TRUE FALSE 3325.625919 3305.921069 3053.093197 3305.473329 3645.211155 4160.940747 3036.109703 3267.987278 3286.738534 3165.609398 1.05054841 1.044323748 0.964456701 1.044182309 1.15150377 1.31442014 0.959091701 1.032340655 1.038264081 1 11.62826754 -4.984157637 16.38117081 1.064900643 1.024496344 0 0.098933821 35237792.87 767681082.8 0.026337658 33913647.79 1.04E-05 4.984157637 -0.040404299 SES(ph)PPPLSDPK ddPTM_K562_Paclitaxel_30min_R1 4 SESPPPLSDPK 11 0 Q15059-2;Q15059 Q15059-2 BRD3 Bromodomain-containing protein 3 1 S(0.001)ES(0.999)PPPLSDPK;S(0.004)ES(0.996)PPPLSDPK;S(0.031)ES(0.969)PPPLSDPK;S(0.121)ES(0.879)PPPLSDPK 171.32 0.00011138 148065000 15249.9 12351.1 27668.1 17223.5 12877.3 11110.1 10737.2 16480.4 13527.7 20532.2 TRUE FALSE 15463.44565 13699.63487 20682.94596 16118.8618 14631.40627 13080.32024 12774.52765 15080.28715 14827.09603 16347.72637 0.94590803 0.838014691 1.265187922 0.98600022 0.895011694 0.800130853 0.781425341 0.922470001 0.906982151 1 13.99680238 -6.756625604 4.33792925 0.86959608 1.017070678 0.215944755 0.11534343 0.295822189 13.15514439 0.036866034 0.045375336 1.75E-07 6.756625604 0.147474598 SESADQTVS(ph)PPTPFAR ddPTM_K562_Paclitaxel_30min_R1 1 SESADQTVSPPTPFAR 16 0 F5H212;P15822 F5H212 HIVEP1 Zinc finger protein 40 1 SESADQT(0.047)VS(0.949)PPT(0.003)PFAR 84.046 0.017349 10864000 1094.6 1023.7 1321.4 1346.6 1080 1088.7 933.43 1263.7 1067.4 1519.6 TRUE FALSE 1109.927777 1135.471028 987.7962271 1260.235103 1227.114285 1281.765659 1110.54347 1156.340797 1169.928539 1209.904686 0.917367946 0.938479734 0.81642483 1.041598663 1.014223929 1.059393912 0.917876823 0.955728836 0.96695926 1 10.24067768 -6.272526395 24.92364395 0.992273656 0.895529723 0.484633501 0.048548976 641.166278 1441342.016 0.014433809 0.021625188 5.34E-07 6.272526395 -0.096743934 SESDLEDVGPTAEWNGDGS(ph)GSLRR ddPTM_K562_Paclitaxel_30min_R1 1 SESDLEDVGPTAEWNGDGSGSLRR 24 1 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 SESDLEDVGPTAEWNGDGS(0.5)GS(0.5)LRR 79.373 0.00018512 12492000 1132.1 1185 1528.3 1292 994.06 1238.7 882.24 1236.9 987.96 1452.6 TRUE FALSE 1147.952893 1314.382307 1142.461763 1209.136903 1129.467802 1458.366053 1049.640434 1131.817625 1082.857972 1156.559323 0.992558592 1.136459049 0.987810777 1.04546034 0.976575762 1.260952226 0.907554341 0.978607498 0.936275339 1 10.17562355 SESDLEDVGPTAEWNGDGSGS(ph)LRR ddPTM_K562_Paclitaxel_30min_R1 1 SESDLEDVGPTAEWNGDGSGSLRR 24 1 Q9H0B6;Q9H0B6-2;A8MZ87 Q9H0B6 KLC2 Kinesin light chain 2 1 SESDLEDVGPTAEWNGDGS(0.073)GS(0.927)LRR 93.126 8.32E-05 12084000 2020.6 1794.6 2731 2124.3 1941.4 1865.6 1682.4 2445.8 1910.7 2587.6 TRUE FALSE 2048.894634 1990.540497 2041.525273 1988.056906 2205.851548 2196.437966 2001.626617 2238.014024 2094.231272 2060.2457 0.994490431 0.966166558 0.990913498 0.964961075 1.070674021 1.066104866 0.971547528 1.086285012 1.016495883 1 11.00860068 -6.749979618 24.99802542 1.037862969 0.979048188 0.399902423 0.03354161 213.0818179 464809.3837 0.009600813 0.012291253 1.78E-07 6.749979618 -0.058814781 SESDS(ph)SPDSKAK ddPTM_K562_Paclitaxel_30min_R1 1 SESDSSPDSKAK 12 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SES(0.001)DS(0.595)S(0.231)PDS(0.173)KAK 92.19 0.011802 0 635.07 552.57 1430 639.1 523.85 330.64 341.83 690.42 1002.2 1002.5 TRUE FALSE 643.9629394 612.9014613 1068.978814 598.1109865 595.2072389 389.2743616 406.690458 631.7645115 1098.465788 798.1899497 0.806779063 0.767864168 1.339253663 0.749334149 0.745696233 0.487696396 0.509515884 0.79149645 1.376195965 1 9.640588303 -11.51807919 12.06008844 1.000000267 0.826833907 0.025235406 0.282452749 2.13E-06 8.53E-08 0.287026995 0.069614164 3.03E-12 11.51807919 -0.17316636 SESGGLGVSMVEYVLSS(ph)SPGDSCLRK ddPTM_K562_Paclitaxel_30min_R1 1 SESGGLGVSMVEYVLSSSPGDSCLRK 26 1 H0YEH2;Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3 H0YEH2 PUM1 Pumilio homolog 1 1 SESGGLGVSMVEYVLS(0.004)S(0.613)S(0.38)PGDS(0.003)CLRK 113.8 3.51E-08 29619000 2596.4 2101.5 3977.2 2421.4 1973.3 1713.4 2009.2 2860.7 2353 3813.4 TRUE FALSE 2632.757611 2330.948877 2973.106671 2266.102242 2242.096868 2017.247433 2390.435211 2617.665679 2579.016163 3036.226987 0.867114884 0.767712324 0.979210936 0.746354687 0.73844837 0.664392827 0.787304514 0.862144263 0.849414808 1 11.56806393 -9.145939352 1.322448532 0.997920043 0.793436626 0.360820958 0.08086862 0.744673092 2.690071002 0.081953955 0.024746258 7.15E-10 9.145939352 -0.204483417 SESGGLGVSMVEYVLSSS(ph)PGDSCLRK ddPTM_K562_Paclitaxel_30min_R1 2 SESGGLGVSMVEYVLSSSPGDSCLRK 26 1 H0YEH2;Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3 H0YEH2 PUM1 Pumilio homolog 1 1 SESGGLGVSMVEYVLSS(0.376)S(0.623)PGDSCLRK;SESGGLGVSMVEYVLS(0.015)S(0.138)S(0.594)PGDS(0.254)CLRK 154.14 4.61E-26 40436000 1599.13 1472.94 2239.13 1911.39 946.4 1462.89 1249.66 1919.61 1438.59 2201.3 TRUE FALSE 1621.522754 1633.76057 1673.833938 1788.802 1075.315703 1722.313002 1486.776461 1756.527149 1576.772997 1752.673852 0.925170848 0.932153218 0.955017351 1.020613161 0.613528696 0.98267741 0.848290433 1.002198525 0.89963857 1 10.77534184 -10.33787707 9.053159685 1.000000221 0.908598336 0.058444676 0.109801477 0 0 0.103911907 0.025202339 4.59E-11 10.33787707 -0.091401885 SESLIDASEDS(ph)QLEAAIR ddPTM_K562_Paclitaxel_30min_R1 1 SESLIDASEDSQLEAAIR 18 0 C9JAT7;O94888 C9JAT7 UBXN7 UBX domain-containing protein 7 1 SESLIDAS(0.001)EDS(0.999)QLEAAIR 203.17 4.26E-16 19843000 2292.4 1796.6 1916.2 1358.2 1416 1441.4 1693.1 2452.2 2777.2 3043.1 TRUE FALSE 2324.500673 1992.758864 1432.431611 1271.091131 1608.883173 1697.012052 2014.356886 2243.870304 3043.962469 2422.91455 0.959382027 0.822463534 0.591201869 0.524612447 0.664028029 0.700401115 0.831377601 0.926103772 1.256322667 1 11.24252781 -8.312066948 1.929199614 1.119587871 0.702273766 0.599785482 0.13137537 0.254216488 1.741676128 0.106748742 0.041122207 4.87E-09 8.312066948 -0.417314105 SESSTSAFST(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 1 SESSTSAFSTPTR 13 0 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 SESSTSAFS(0.008)T(0.978)PT(0.014)R 156 0.0017196 24578000 2651.1 2358.6 3256.4 2728.5 2580 2494.1 2229.2 2981.3 2777.7 3051.7 TRUE FALSE 2688.223579 2616.119924 2434.281545 2553.506222 2931.43968 2936.393616 2652.179063 2728.019956 3044.510496 2429.761865 1.10637327 1.076698076 1.001860133 1.050928595 1.20647201 1.208510866 1.091538682 1.122751985 1.25300777 1 11.24659921 -6.742679959 24.86683833 1.153482272 1.056152702 0.268369693 0.070709794 286.6383897 379955.9815 0.020488705 0.026404506 1.81E-07 6.742679959 -0.09732957 SEST(ph)Y(ph)S(ph)VNSTGRR ddPTM_K562_Paclitaxel_30min_R1 1 SESTYSVNSTGRR 13 1 Q68EN5-2;Q68EN5 Q68EN5-2 KIAA0895L Uncharacterized protein KIAA0895-like 3 S(0.004)ES(0.54)T(0.64)Y(0.824)S(0.886)VNS(0.058)T(0.048)GRR 62.077 0.028153 21125000 4015.4 3991.3 4880.2 6065.4 3431.2 2600.8 3901.4 4000.9 4158 5513.4 TRUE FALSE 4071.627989 4427.083632 3648.133152 5676.392392 3898.587531 3062.015363 4641.670283 3660.998572 4557.394478 4389.766054 0.92752733 1.00850104 0.831054117 1.29309679 0.888108269 0.697534977 1.057384432 0.833984893 1.038186186 1 12.09992834 SESVVY(ph)ADIR ddPTM_K562_Paclitaxel_30min_R1 2 SESVVYADIR 10 0 O95297-4;O95297-2;O95297;O95297-5 O95297-4 MPZL1 Myelin protein zero-like protein 1 1 SESVVY(1)ADIR;SESVVY(1)ADIR 166.09 0.00030032 17741400 5614.1 5037.5 7419.9 6337.8 5595.4 5184.4 5036.5 6254.8 3818.6 5925.7 TRUE FALSE 5692.714721 5587.511286 5546.654477 5931.321875 6357.588211 6103.780547 5992.149583 5723.415699 4185.393592 4718.039087 1.2065849 1.184286773 1.175627072 1.257158274 1.347506473 1.293711314 1.270050856 1.213092048 0.887104476 1 12.20397166 -8.710128604 6.277052015 0.944056398 1.247222585 0.824438501 0.055421443 0.074292831 6.38901617 0.044367622 0.015789912 1.95E-09 8.710128604 0.303166188 SET(ph)PPHWR ddPTM_K562_Paclitaxel_30min_R1 1 SETPPHWR 8 0 E9PG73;Q13427;C9JM79 E9PG73 PPIG Peptidyl-prolyl cis-trans isomerase G 1 SET(1)PPHWR 109.83 0.0095174 16865000 4073.2 3844.9 5237.2 4518.8 4109.5 3861 3422.6 4294.5 3811.5 5151.4 TRUE FALSE 4130.237367 4264.699185 3915.004087 4228.984393 4669.283474 4545.694139 4072.020483 3929.65542 4177.611605 4101.541852 1.006996275 1.039779512 0.954520087 1.031071862 1.138421511 1.108289103 0.992802373 0.95809224 1.018546624 1 12.00195063 -7.957930526 24.98481631 0.988080988 1.045921695 0.221547914 0.049541032 234.0780988 139017.1391 0.023279795 0.015695216 1.10E-08 7.957930526 0.057840707 SETAPAAPAAPAPAEKT(ph)PVK ddPTM_K562_Paclitaxel_30min_R1 1 SETAPAAPAAPAPAEKTPVK 20 1 P10412 P10412 HIST1H1E Histone H1.4 1 SETAPAAPAAPAPAEKT(1)PVK 98.572 0.0043684 8584800 2060.5 2073.6 4480.9 2616.5 1828.6 1482.9 1566.6 2225 1460.3 3031.1 TRUE FALSE 2089.353357 2300.00266 3349.641376 2448.689401 2077.686278 1745.871494 1863.854172 2035.972362 1600.56834 2413.360156 0.865744531 0.953029184 1.387957519 1.014639027 0.86091016 0.723419374 0.772306681 0.84362558 0.663211554 1 11.23682752 -6.786696683 3.499416828 0.790498878 1.076687042 0.392239841 0.150517661 0.229092047 5.876765291 0.048722618 0.059257711 1.63E-07 6.786696683 0.286188164 SETAPAETATPAPVEKS(ph)PAK ddPTM_K562_Paclitaxel_30min_R1 2 SETAPAETATPAPVEKSPAK 20 1 P16401 P16401 HIST1H1B Histone H1.5 1 SETAPAET(0.002)AT(0.002)PAPVEKS(0.997)PAK;SETAPAETATPAPVEKS(1)PAK 111.24 0.0001352 218260000 5583.3 3558.2 13720.7 6771.6 4477.5 3474.8 3678.9 6644.1 3800.5 8901.4 TRUE FALSE 5661.483426 3946.696309 10256.73959 6337.299885 5087.411305 4091.006991 4376.95207 6079.642234 4165.555006 7087.289794 0.798822059 0.556869611 1.447201947 0.894178179 0.717821826 0.57723151 0.617577691 0.857823288 0.587750061 1 12.79101833 -6.73297883 5.310335864 0.70558939 0.938266033 0.138292238 0.239309382 0.344077416 25.4486192 0.073640723 0.09259705 1.85E-07 6.73297883 0.232676643 SETS(ph)TSDNTETYQENTSSSGHPTFK ddPTM_K562_Paclitaxel_30min_R1 1 SETSTSDNTETYQENTSSSGHPTFK 25 0 J3QLQ3;Q8WVD3-2;Q8WVD3 J3QLQ3 RNF138 E3 ubiquitin-protein ligase RNF138 1 S(0.042)ET(0.042)S(0.182)T(0.182)S(0.182)DNT(0.103)ET(0.172)Y(0.093)QENT(0.002)S(0.001)SSGHPTFK 51.119 0.020448 13707000 1467.2 1164.7 1850.3 1544.4 811.91 1160.4 996.44 1421.4 1117.4 1889.4 TRUE FALSE 1487.745327 1291.865885 1383.168881 1445.349096 922.5058877 1366.180647 1185.509288 1300.643198 1224.731263 1504.339243 0.988969299 0.858759679 0.919452768 0.960786673 0.613229956 0.908159947 0.788059804 0.864594342 0.814132363 1 10.55491423 SETST(ph)SDNTETYQENTSSSGHPTFK ddPTM_K562_Paclitaxel_30min_R1 2 SETSTSDNTETYQENTSSSGHPTFK 25 0 J3QLQ3;Q8WVD3-2;Q8WVD3 J3QLQ3 RNF138 E3 ubiquitin-protein ligase RNF138 1 S(0.001)ET(0.02)S(0.09)T(0.425)S(0.343)DNT(0.112)ET(0.002)Y(0.008)QENTSSSGHPTFK;S(0.026)ET(0.102)S(0.032)T(0.42)S(0.42)DNT(0.001)ETYQENTSSSGHPTFK 137.42 1.11E-14 31357000 2773.6 2159.16 4184.4 2708.8 2157.89 2174.5 2002.83 2571.3 2586.6 3492.5 TRUE FALSE 2812.438957 2394.904391 3127.996468 2535.069692 2451.831151 2560.117044 2382.856537 2352.852015 2835.054487 2780.726583 1.011404348 0.861251302 1.124884585 0.911657301 0.881723204 0.920664786 0.856918674 0.846128501 1.019537305 1 11.44124618 -6.465640606 24.9997721 0.908727194 0.990867859 0.162910205 0.079540385 461.6644101 201639.4886 0.021539712 0.031948466 3.42E-07 6.465640606 0.082140665 SETSWES(ph)PKQIK ddPTM_K562_Paclitaxel_30min_R1 1 SETSWESPKQIK 12 1 E5RJU9;Q86UE4 E5RJU9 MTDH Protein LYRIC 1 SET(0.038)S(0.027)WES(0.935)PKQIK 121.42 0.0067624 6411600 1018.6 609.48 1926.8 1122.7 729.68 444.65 583.5 778.2 782.26 1231 TRUE FALSE 1032.863543 676.0250875 1440.35551 1050.695047 829.0747696 523.5024343 694.2160789 712.0870526 857.3995682 980.1215243 1.053811713 0.689735988 1.469568287 1.07200487 0.845889769 0.534119924 0.708295922 0.726529349 0.874789041 1 9.936816828 -6.865096606 4.230513579 0.743064624 1.0722084 0.316855488 0.208453809 0.254674205 8.199115032 0.066959442 0.077384956 1.36E-07 6.865096606 0.329143776 SEVQQPVHPKPLS(ph)PDSR ddPTM_K562_Paclitaxel_30min_R1 2 SEVQQPVHPKPLSPDSR 17 1 Q9UHB6;Q9UHB6-4;F8VRN8;F8VS07;F8VQE1;Q9UHB6-3;Q9UHB6-2;Q9UHB6-5 Q9UHB6 LIMA1 LIM domain and actin-binding protein 1 1 SEVQQPVHPKPLS(0.688)PDS(0.312)R;SEVQQPVHPKPLS(0.915)PDS(0.085)R 83.251 0.0087711 306990000 2871.4 2674.1 5982.9 4267.9 2375.6 2658 2414.4 3675.8 2397.58 4601.3 TRUE FALSE 2911.608459 2966.067281 4472.442899 3994.175996 2699.196939 3129.35898 2872.519796 3363.517846 2627.878272 3663.552534 0.794750022 0.809615054 1.220793986 1.090246682 0.736770365 0.854187009 0.784080416 0.918102802 0.717303286 1 11.83902759 -6.76449953 24.99994564 0.829385099 0.98404473 0.202353193 0.139418462 131.7879044 1076644.768 0.044664156 0.052834979 1.72E-07 6.76449953 0.154659631 SEVS(ph)SPIQR ddPTM_K562_Paclitaxel_30min_R1 1 SEVSSPIQR 9 0 B4DJX4;Q9HAU0-5;Q9HAU0-8;Q9HAU0;Q9HAU0-2;Q9HAU0-4;Q9HAU0-6;A0JP02;Q9HAU0-3;H0YG48 B4DJX4 PLEKHA5 Pleckstrin homology domain-containing family A member 5 1 SEVS(0.5)S(0.5)PIQR 109.83 0.0064253 8944700 2913.1 2560.9 3959.2 3135.8 3084.8 3124.1 2639.9 3366.9 2482.2 4023.2 TRUE FALSE 2953.892388 2840.507722 2959.650993 2934.683823 3505.001986 3678.11527 3140.807244 3080.860829 2720.626401 3203.269632 0.922149156 0.886752615 0.923946884 0.916152607 1.094195116 1.148237799 0.980500428 0.961786295 0.849327941 1 11.64532953 -6.635238473 10.91925707 1.009592638 0.910468097 0.270924845 0.074947292 0.521191393 47.96047157 0.02452033 0.031655556 2.32E-07 6.635238473 -0.099124541 SEWLDPS(ph)QKSPLHVGETR ddPTM_K562_Paclitaxel_30min_R1 1 SEWLDPSQKSPLHVGETR 18 1 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 SEWLDPS(0.727)QKS(0.272)PLHVGET(0.001)R 67.994 0.020297 94416000 917.34 640.65 1742.2 1275.4 894.1 748.33 743.43 1178.8 616.14 1497.2 TRUE FALSE 930.1855902 710.5983335 1302.360063 1193.601552 1015.891557 881.0358184 884.4919615 1078.653582 675.323 1192.069818 0.780311334 0.596104626 1.092519954 1.001284937 0.852208102 0.739080719 0.741979998 0.904857724 0.566512959 1 10.21925302 -7.108610219 6.600608201 0.782070326 0.871599836 0.048645178 0.161983844 0.811436807 42.99590921 0.055076859 0.055237993 7.79E-08 7.108610219 0.08952951 SEWLDPSQKS(ph)PLHVGETR ddPTM_K562_Paclitaxel_30min_R1 2 SEWLDPSQKSPLHVGETR 18 1 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 SEWLDPS(0.253)QKS(0.747)PLHVGETR;SEWLDPS(0.041)QKS(0.958)PLHVGET(0.001)R 79.467 0.0076596 60024000 2740.09 2410.57 5012.53 3373.26 2547.16 2726.7 2050.94 3255.99 2430.82 4596.7 TRUE FALSE 2778.459714 2673.764185 3747.054807 3156.914202 2894.126316 3210.24196 2440.095158 2979.373326 2664.311122 3659.890017 0.759164811 0.730558616 1.023816232 0.862570784 0.790768658 0.877141648 0.666712701 0.814060891 0.727975734 1 11.83758458 SFAGAVSPQEEEEFRR ddPTM_K562_Paclitaxel_30min_R1 2 SFAGAVSPQEEEEFRR 16 1 B1AHB1;P33992 B1AHB1 MCM5 DNA helicase;DNA replication licensing factor MCM5 0 ; 141.06 2.52E-08 24248000 1531.98 1628.44 1902.83 2081.83 1430.24 1424.61 1486.85 1855.01 1844.07 2265.6 FALSE TRUE 1553.432447 1806.238586 1422.437033 1948.310742 1625.062902 1677.244581 1768.972026 1697.415322 2021.201163 1803.869476 0.861166768 1.001313349 0.788547648 1.080073014 0.900876102 0.929803737 0.980654115 0.940985667 1.120480827 1 10.81687924 -8.740757309 24.10880979 1.060240323 0.937717589 0.283290795 0.079343025 165.3177906 192710.6116 0.049763792 0.01875414 1.82E-09 8.740757309 -0.122522733 SFAPS(ph)TPLTGR ddPTM_K562_Paclitaxel_30min_R1 1 SFAPSTPLTGR 11 0 P28749;P28749-2;H0YE05 P28749 RBL1 Retinoblastoma-like protein 1 1 SFAPS(0.498)T(0.498)PLT(0.003)GR 122.34 0.0023914 27579000 2405 2186.8 3213.1 2664.4 2113.3 2387.1 2465.2 2483.1 1955.2 3195 TRUE FALSE 2438.67742 2425.562219 2401.913166 2493.517309 2401.167238 2810.418668 2932.958831 2272.145156 2143.005696 2543.857246 0.958653409 0.953497773 0.94420124 0.980211179 0.943908013 1.104786313 1.152957319 0.893188939 0.842423725 1 11.312802 SFEVEEVET(ph)PNSTPPRR ddPTM_K562_Paclitaxel_30min_R1 1 SFEVEEVETPNSTPPRR 17 1 K7ENL0;K7EJV0;K7EPY1;Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8 K7ENL0 9-Sep Septin-9 1 SFEVEEVET(0.73)PNS(0.135)T(0.135)PPRR 94.057 0.0051962 34395000 971.36 989.31 1243.3 1000.8 834.24 994.17 925.14 883.49 997.07 931.85 TRUE FALSE 984.9620369 1097.326211 929.4135381 936.6131674 947.8776118 1170.472091 1100.680485 808.4320099 1092.843029 741.9384585 1.327552205 1.478998964 1.25268279 1.262386599 1.27756905 1.577586493 1.483519924 1.089621384 1.472956437 1 9.535155714 -11.58592472 2.892833227 0.977492975 1.355617258 0.375875672 0.138398483 40789617.31 44127379.93 7073778.279 0.035013189 2.59E-12 11.58592472 0.378124282 SFEVEEVETPNST(ph)PPRR ddPTM_K562_Paclitaxel_30min_R1 1 SFEVEEVETPNSTPPRR 17 1 K7ENL0;K7EJV0;K7EPY1;Q9UHD8-7;Q9UHD8-2;Q9UHD8-5;Q9UHD8 K7ENL0 9-Sep Septin-9 1 SFEVEEVET(0.01)PNS(0.405)T(0.584)PPRR 99.86 0.0027455 33310000 1727.6 1579.7 2099.3 1754.7 1839.1 1890.8 1547 1807.9 1938.9 2375.7 TRUE FALSE 1751.79173 1752.176988 1569.305751 1642.161396 2089.616556 2226.106832 1840.535174 1654.30761 2125.140008 1891.531036 0.926123704 0.92632738 0.829648428 0.868165187 1.104722321 1.176880944 0.973039902 0.874586554 1.123502585 1 10.88533873 -6.750266283 24.99993683 1.039135217 0.886197816 0.449640104 0.083724139 225.6876126 504976.3483 0.026795582 0.034262202 1.78E-07 6.750266283 -0.152937401 SFFDNISCDDNRER ddPTM_K562_Paclitaxel_30min_R1 1 SFFDNISCDDNRER 14 1 Q8ND56-2;Q8ND56;Q8ND56-3;A0A0G2JQ95;A0A096LP11;A0A140TA76 Q8ND56-2 LSM14A Protein LSM14 homolog A 0 129.76 0.00092896 12249000 1636.4 1917.2 1865.8 1912 1851 1610.7 1566.4 1884.9 2212.4 2197.3 FALSE TRUE 1659.314649 2126.52638 1394.755714 1789.372878 2103.137538 1896.33503 1863.616223 1724.76598 2424.910905 1749.489054 0.948456719 1.215512823 0.797236034 1.022797413 1.202143868 1.083936493 1.065234572 0.985868403 1.386068064 1 10.77271792 -6.546910586 20.56669365 1.1149884 0.993263737 0.156457577 0.142913756 61.27267204 52435.71271 0.040939966 0.052863561 2.84E-07 6.546910586 -0.121724664 SFGSPNRAY(ph)THQVVTR ddPTM_K562_Paclitaxel_30min_R1 1 SFGSPNRAYTHQVVTR 16 1 D6REC6;D6R9G1;D6RAD4;P50613 D6REC6 CDK7 Cyclin-dependent kinase 7 1 S(0.269)FGS(0.269)PNRAY(0.415)T(0.047)HQVVTR 65.374 0.029741 20973000 1333.1 1138.3 1382.6 1542.5 1228.7 1369.6 1238 1017.7 3911 1668.1 TRUE FALSE 1351.767513 1262.583443 1033.54553 1443.570954 1396.069742 1612.47933 1472.904037 931.2400327 4286.669025 1328.140304 1.017789693 0.950640109 0.77819002 1.086911488 1.051146281 1.214088093 1.108997319 0.701160886 3.227572426 1 10.37519185 -8.728998791 24.99986202 2.113792275 0.997224608 0.429505933 0.518627191 138.5430882 106766.5626 0.314617729 0.118894868 1.87E-09 8.728998791 -1.116567667 SFHFDPLSSGS(ph)R ddPTM_K562_Paclitaxel_30min_R1 3 SFHFDPLSSGSR 12 0 Q9C0B5-2;Q9C0B5;H0YEF4 Q9C0B5-2;H0YEF4 ZDHHC5 Palmitoyltransferase ZDHHC5;Palmitoyltransferase 1 SFHFDPLSS(0.002)GS(0.998)R;SFHFDPLS(0.007)S(0.099)GS(0.894)R;SFHFDPLS(0.011)S(0.001)GS(0.988)R 149.82 0.00062702 54941500 8246.12 8209.2 9330.1 8414.7 7724.2 8034.81 9855.4 11661 8422.29 13757.6 TRUE FALSE 8361.591121 9105.508218 6974.600862 7875.018805 8776.366812 9459.670739 11725.4107 10670.32526 9231.288586 10953.79357 0.763351169 0.831265275 0.636729259 0.71893073 0.801217109 0.863597682 1.070442914 0.974121449 0.842748088 1 13.41914298 -7.345502415 2.43308193 0.968770603 0.741326769 0.677797314 0.071719305 0.181857647 2.110354199 0.029258543 0.02558865 4.51E-08 7.345502415 -0.227443835 SFIS(ph)PASIR ddPTM_K562_Paclitaxel_30min_R1 1 SFISPASIR 9 0 C9IYV0;Q8N8L2 C9IYV0 ZNF491 Zinc finger protein 491 1 SFIS(0.841)PAS(0.159)IR 89.698 0.0124 9351900 3599.8 4107.1 4564.1 3942.2 4021.8 3300 3695.4 4249.9 2850.8 4620.6 TRUE FALSE 3650.208306 4555.527067 3411.836507 3689.364937 4569.63725 3885.208666 4396.582859 3888.844468 3124.632078 3678.919184 0.992195839 1.238278646 0.927401864 1.002839354 1.242114062 1.056073393 1.195074596 1.057061673 0.849334253 1 11.84506627 -8.614603621 6.399431697 0.927818456 1.095606611 0.282059441 0.105994866 0.264185461 15.09068549 0.071895303 0.026401658 2.43E-09 8.614603621 0.167788155 SFLSEPSS(ph)PGR ddPTM_K562_Paclitaxel_30min_R1 3 SFLSEPSSPGR 11 0 H0YC41;Q69YN4-3;Q69YN4 H0YC41 KIAA1429 Protein virilizer homolog 1 SFLSEPS(0.001)S(0.999)PGR;SFLSEPS(0.017)S(0.983)PGR;SFLSEPS(0.05)S(0.95)PGR 179.6 0.00071882 1257470000 15828.4 15142 19690.9 17212.9 16353.4 14848.1 15075.5 17415.6 11750.9 17561.1 TRUE FALSE 16050.04643 16795.25477 14719.68876 16108.94164 18581.00995 17481.20206 17935.99743 15936.03608 12879.62645 13982.13818 1.147896425 1.201193591 1.052749484 1.152108599 1.328910479 1.250252417 1.2827793 1.139742425 0.92114856 1 13.77129738 -8.643795389 4.626864441 0.963071198 1.201827908 0.615593486 0.075095269 0.150871718 5.25021623 0.061751478 0.02126831 2.27E-09 8.643795389 0.23875671 SFLVASVLPGPDGNINS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 2 SFLVASVLPGPDGNINSPTR 20 0 Q7Z3K3-5;Q7Z3K3-7;Q7Z3K3-2;Q7Z3K3-3;Q7Z3K3-6;Q7Z3K3 Q7Z3K3-5 POGZ Pogo transposable element with ZNF domain 1 S(0.196)FLVAS(0.349)VLPGPDGNINS(0.393)PT(0.062)R;SFLVASVLPGPDGNINS(0.989)PT(0.011)R 291.28 6.35E-162 48851000 6150.2 6283.1 6823.4 5742.8 5373.2 5270.5 6748.8 7923.1 4069.1 7975 TRUE FALSE 6236.321775 6969.110106 5100.748279 5374.482512 6105.120809 6205.149174 8029.349569 7249.983201 4459.955236 6349.690622 0.982145768 1.097551128 0.803306583 0.846416437 0.961483192 0.977236458 1.264526108 1.141785267 0.702389376 1 12.63247059 -7.533768142 24.94024561 1.050689268 0.937935123 0.062104346 0.152444668 532.9569273 1220631.866 0.05998585 0.046508329 2.93E-08 7.533768142 -0.112754145 SFMDFGS(ph)WER ddPTM_K562_Paclitaxel_30min_R1 1 SFMDFGSWER 10 0 Q9UBB9 Q9UBB9 TFIP11 Tuftelin-interacting protein 11 1 SFMDFGS(1)WER 107.85 0.0058868 2413800 1009.1 1124 1354.7 1132.7 1128.3 1092 954.24 1342.8 1480.4 1777.2 TRUE FALSE 1023.230513 1246.722121 1012.68923 1060.053692 1281.993562 1285.650868 1135.302059 1228.720759 1622.599035 1415.005664 0.72312821 0.881072177 0.71567857 0.749151554 0.905998891 0.908583548 0.802330398 0.868350417 1.146708508 1 10.46659211 -8.647048105 5.292151647 1.070100911 0.817493628 0.654005115 0.074623701 0.126040929 5.185238713 0.055049604 0.019524485 2.25E-09 8.647048105 -0.252607283 SFNYS(ph)PNSSTSEVSSTSASK ddPTM_K562_Paclitaxel_30min_R1 1 SFNYSPNSSTSEVSSTSASK 20 0 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 S(0.027)FNY(0.002)S(0.872)PNS(0.099)STSEVSSTSASK 113.05 9.72E-05 12559000 2559.6 2225.8 4533.7 2850.4 1850.7 1964 1797.3 2444.5 2093 3294 TRUE FALSE 2595.442297 2468.820371 3389.111363 2667.588102 2102.796673 2312.287824 2138.328292 2236.824467 2294.042002 2622.680992 0.989614179 0.941334603 1.292231641 1.017122597 0.801773711 0.88165043 0.815321535 0.852877065 0.874693495 1 11.35682662 -6.625732829 5.596889461 0.862426881 1.075396084 0.470718178 0.099098951 0.174715313 8.094707015 0.029641625 0.038460698 2.37E-07 6.625732829 0.212969203 SFPIKPVPSPSWS(ph)GSCR ddPTM_K562_Paclitaxel_30min_R1 1 SFPIKPVPSPSWSGSCR 17 1 Q9P0U3-2;Q9P0U3 Q9P0U3-2 SENP1 Sentrin-specific protease 1 1 SFPIKPVPS(0.076)PS(0.087)WS(0.656)GS(0.18)CR 103.97 0.0046389 14189000 570.12 512.33 1048.2 737.32 568.28 493.81 439.07 645.5 650.39 775.77 TRUE FALSE 578.103439 568.267922 783.568946 690.0315953 645.6893571 581.3802701 522.3812404 590.6607459 712.8628655 617.6676482 0.935945797 0.920022157 1.268593148 1.117156771 1.045366969 0.941250965 0.845731911 0.956275997 1.154120452 1 9.270686958 -7.139336178 5.204998105 0.968818438 1.066856309 0.098271446 0.115498819 0.52012138 20.01386658 0.041508523 0.041633083 7.26E-08 7.139336178 0.09803787 SFREPAPAEALPQQYPEPAPAALCGPPPRAPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SFREPAPAEALPQQYPEPAPAALCGPPPRAPSR 33 2 Q8IU81 Q8IU81 IRF2BP1 Interferon regulatory factor 2-binding protein 1 1 SFREPAPAEALPQQYPEPAPAALCGPPPRAPS(1)R 136.86 1.49E-24 20118000 177.3 226.32 220.46 138.32 185.1 122.02 215.73 325.27 72.313 278.36 TRUE FALSE 179.782747 251.030383 164.8021464 129.4487743 210.3137538 143.6585338 256.6636413 297.6362832 79.25898675 221.6300792 0.811183877 1.132654845 0.743591064 0.584075838 0.94894048 0.648190599 1.158072236 1.342941736 0.357618366 1 7.792009884 -7.76260448 24.99992714 0.993236529 0.818871484 0.064985082 0.275478857 86.46937431 1855316.96 0.109626193 0.078616396 1.73E-08 7.76260448 -0.174365045 SFS(ph)ADNFIGIQR ddPTM_K562_Paclitaxel_30min_R1 2 SFSADNFIGIQR 12 0 Q8N7R7-3;Q8N7R7-2;Q8N7R7 Q8N7R7-3 CCNYL1 Cyclin-Y-like protein 1 1 S(0.073)FS(0.927)ADNFIGIQR;S(0.293)FS(0.707)ADNFIGIQR 151.22 0.00018071 82613000 2300.4 2395.2 3304.3 2611.7 2319.8 2238.5 2407.5 2657.3 2457.8 2583.9 TRUE FALSE 2332.612697 2656.716036 2470.088598 2444.197252 2635.796035 2635.466545 2864.310557 2431.545779 2693.882672 2057.299762 1.13382247 1.291360688 1.200645936 1.188060825 1.281192019 1.281031862 1.392266995 1.181911272 1.309426425 1 11.0065363 -11.09882309 3.910587176 0.99992931 1.252812502 0.52243125 0.072000088 52940684.03 93149611.1 50615.13293 0.017769406 7.96E-12 11.09882309 0.252883192 SFS(ph)ASQSTDREGAS(ph)PVTEVR ddPTM_K562_Paclitaxel_30min_R1 1 SFSASQSTDREGASPVTEVR 20 1 Q9ULJ3;Q9ULJ3-2 Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 2 S(0.071)FS(0.498)AS(0.175)QS(0.165)T(0.165)DREGAS(0.632)PVT(0.294)EVR 87.352 0.02167 19943000 2869.2 2402 3498.6 2989.6 2399.2 2384.7 2584.8 2926.6 3002.3 3929 TRUE FALSE 2909.377652 2664.258483 2615.33516 2797.860437 2726.011659 2807.593062 3075.252306 2677.967063 3290.68433 3128.267643 0.930028368 0.851672167 0.836033057 0.894380135 0.871412542 0.897491322 0.983052813 0.85605433 1.051919051 1 11.61114823 -8.317343106 0.728407037 1.010777028 0.871308004 0.481179595 0.049450362 0.566101013 0.582825979 0.044035815 0.020622917 4.82E-09 8.317343106 -0.139469024 SFS(ph)EDTLMDGPAR ddPTM_K562_Paclitaxel_30min_R1 4 SFSEDTLMDGPAR 13 0 Q9BRG2;M0QZQ6 Q9BRG2 SH2D3A SH2 domain-containing protein 3A 1 S(0.04)FS(0.898)EDT(0.062)LMDGPAR;SFS(0.986)EDT(0.014)LMDGPAR;S(0.078)FS(0.803)EDT(0.12)LMDGPAR;S(0.056)FS(0.786)EDT(0.158)LMDGPAR 177.36 0.00013378 112453800 9594.5 9061.5 13247.2 11641.9 11642.4 10021.5 9571.4 10736.7 8513.2 12065 TRUE FALSE 9728.852602 10050.86521 9902.780521 10895.24064 13228.29199 11798.67232 11387.52318 9824.550319 9330.930898 9606.146377 1.01277372 1.046295238 1.030879619 1.134194735 1.377065419 1.228241987 1.185441356 1.022735854 0.971350064 1 13.22974208 -8.379101737 4.655406572 0.989531914 1.148208958 0.307236818 0.101755989 0.329106509 11.04407401 0.068746811 0.031254172 4.18E-09 8.379101737 0.158677044 SFS(ph)KEVEER ddPTM_K562_Paclitaxel_30min_R1 1 SFSKEVEER 9 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 S(0.001)FS(0.999)KEVEER 134.18 0.0022542 134970000 4067.1 3202.9 6683 4015 2940.4 2690.2 2816.4 3198.8 3521.4 4259.9 TRUE FALSE 4124.051948 3552.603454 4995.793996 3757.49587 3340.932261 3167.269198 3350.797197 2927.041974 3859.646204 3391.730042 1.215913972 1.047431078 1.472933852 1.10784049 0.985023047 0.933821135 0.987931574 0.862993793 1.137957961 1 11.72780563 -6.571433695 4.496578194 0.9775158 1.235306873 0.501136609 0.116098164 0.163664795 7.143154989 0.033908813 0.04529177 2.68E-07 6.571433695 0.257791073 SFS(ph)MQDLR ddPTM_K562_Paclitaxel_30min_R1 4 SFSMQDLR 8 0 Q9H6H4;E5RGS2 Q9H6H4 REEP4 Receptor expression-enhancing protein 4;Receptor expression-enhancing protein 1 S(0.001)FS(0.999)MQDLR;S(0.017)FS(0.983)MQDLR;S(0.002)FS(0.998)MQDLR;S(0.137)FS(0.863)MQDLR 117.14 0.005298 131682000 17968.4 18272.3 22307.2 18701.8 15051.8 14888.2 16014 18141.9 13537.2 21124.5 TRUE FALSE 18220.01304 20267.33151 16675.47147 17502.35025 17102.10999 17528.41323 19052.5729 16600.63236 14837.50855 16819.3153 1.083279117 1.205003363 0.9914477 1.040610152 1.016813686 1.042159738 1.132779341 0.986998106 0.882170783 1 14.03783136 -2.9810851 0.214922933 0.966533017 1.568905357 0.289131155 0.070486566 45.45823552 0.825668208 0.12280786 8.645452751 0.001044516 2.9810851 0.60237234 SFS(ph)SSAEEHS ddPTM_K562_Paclitaxel_30min_R1 2 SFSSSAEEHS 10 0 Q96EQ0 Q96EQ0 SGTB Small glutamine-rich tetratricopeptide repeat-containing protein beta 1 S(0.001)FS(0.997)S(0.002)SAEEHS;S(0.073)FS(0.643)S(0.142)S(0.142)AEEHS 209.73 2.60E-09 29727000 6140.9 5415.6 7376.7 6536.7 5100 6248.6 6423.4 7598.8 5226.6 8071.9 TRUE FALSE 6226.891546 6006.893522 5514.360851 6117.465319 5794.706344 7356.701475 7642.206618 6953.23451 5728.638283 6426.842349 0.968888174 0.934657052 0.858020246 0.951861737 0.901641277 1.144683668 1.189107528 1.081905255 0.891361258 1 12.64989437 -7.24950367 24.7972374 1.07451162 0.921652464 0.419848283 0.080603652 652.3314727 1355262.507 0.027953486 0.027749468 5.63E-08 7.24950367 -0.152859156 SFS(ph)TGSDLGHWVTTPPDIPGSR ddPTM_K562_Paclitaxel_30min_R1 1 SFSTGSDLGHWVTTPPDIPGSR 22 0 Q96AG3-3;Q96AG3 Q96AG3-3 SLC25A46 Solute carrier family 25 member 46 1 S(0.135)FS(0.288)T(0.288)GS(0.288)DLGHWVTTPPDIPGSR 55.62 0.022088 33557000 552.07 560.09 696.26 566.66 419.85 566.58 532.4 721.42 671.53 840.27 TRUE FALSE 559.8006833 621.2425203 520.4805518 530.3169639 477.0406781 667.0550078 633.4201207 660.130868 736.033457 669.0225128 0.836744164 0.928582385 0.777971655 0.792674318 0.713041294 0.997059135 0.946784463 0.986709498 1.100162465 1 9.385910948 -7.284835772 23.47765457 1.001602605 0.813681671 0.713941453 0.062083127 224.6769012 225456.0619 0.023294061 0.020560022 5.19E-08 7.284835772 -0.187920934 SFSASQSTDREGAS(ph)PVTEVR ddPTM_K562_Paclitaxel_30min_R1 4 SFSASQSTDREGASPVTEVR 20 1 Q9ULJ3;Q9ULJ3-2 Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 SFSAS(0.001)QS(0.001)T(0.002)DREGAS(0.697)PVT(0.299)EVR;S(0.012)FS(0.012)AS(0.011)QS(0.011)T(0.011)DREGAS(0.924)PVT(0.02)EVR;SFSASQST(0.001)DREGAS(0.998)PVTEVR;SFSASQSTDREGAS(0.975)PVT(0.025)EVR 161.35 6.93E-12 130307000 4148.68 4501.95 5095.91 4673.29 4339.36 3978.23 3830.19 4364.44 4281.24 5020.6 TRUE FALSE 4206.77432 4993.488126 3809.384495 4373.566096 4930.454298 4683.713233 4556.948558 3993.65358 4692.472231 3997.398964 1.052377898 1.249184325 0.952965798 1.094102974 1.233415614 1.17169021 1.139978421 0.999063045 1.173881385 1 11.96484585 -10.43091742 0.610766725 0.986918178 1.122180504 0.126469301 0.091535185 21.90613223 6.845321913 0.752722725 0.037219109 3.71E-11 10.43091742 0.135262326 SFSKEELMS(ph)S(ph)DLEETAGSTSIPK ddPTM_K562_Paclitaxel_30min_R1 1 SFSKEELMSSDLEETAGSTSIPK 23 1 O00567 O00567 NOP56 Nucleolar protein 56 2 S(0.036)FS(0.04)KEELMS(0.838)S(0.799)DLEET(0.184)AGS(0.059)T(0.021)S(0.023)IPK 54.235 0.029577 8264900 2415.4 1813.2 4618 2647.6 2067.4 1358.7 1294.2 2207.2 2440.4 3247.7 TRUE FALSE 2449.223052 2011.171308 3452.128785 2477.794786 2349.014881 1599.646368 1539.767694 2019.684583 2674.811324 2585.816957 0.947175725 0.777770175 1.335024421 0.958225129 0.908422723 0.618623203 0.595466624 0.781062471 1.034416344 1 11.33640444 -6.946471447 3.592909689 0.777616087 1.010643205 0.193722167 0.18485328 0.349139185 9.303887779 0.06259314 0.070258015 1.13E-07 6.946471447 0.233027118 SFSKEELMS(ph)SDLEETAGSTSIPK ddPTM_K562_Paclitaxel_30min_R1 2 SFSKEELMSSDLEETAGSTSIPK 23 1 O00567 O00567 NOP56 Nucleolar protein 56 1 S(0.008)FS(0.008)KEELMS(0.649)S(0.255)DLEET(0.059)AGS(0.014)T(0.006)S(0.002)IPK;SFSKEELMS(0.5)S(0.5)DLEETAGSTSIPK 104.52 0.00013744 32651000 3229.4 2556.45 6432 3711.1 2539 2118.54 2507.1 3534.5 3132.6 4572.8 TRUE FALSE 3274.621564 2835.571856 4808.16205 3473.086656 2884.854786 2494.233323 2982.809137 3234.222163 3433.500227 3640.86085 0.899408601 0.778819069 1.320611319 0.953919087 0.792355134 0.685066919 0.819259307 0.888312489 0.943046265 1 11.83006389 SFSKEELMS(ph)SDLEETAGSTSIPKR ddPTM_K562_Paclitaxel_30min_R1 1 SFSKEELMSSDLEETAGSTSIPKR 24 2 O00567 O00567 NOP56 Nucleolar protein 56 1 SFS(0.001)KEELMS(0.5)S(0.5)DLEETAGSTSIPKR 66.644 0.0015872 54985000 995.12 621.53 2125.8 1080 755.87 639.72 780.44 925.79 1138.3 1796.4 TRUE FALSE 1009.05475 689.3907473 1589.115498 1010.733634 858.832291 753.1653599 928.5244158 847.1383609 1247.638801 1430.292694 0.705488292 0.481992777 1.11104217 0.706662097 0.600459119 0.526581282 0.649184897 0.592283219 0.872296144 1 10.48209469 -8.951325842 4.540497124 0.998545462 0.674046877 0.310548575 0.162787388 0.220035843 9.485571384 0.161419971 0.042248268 1.12E-09 8.951325842 -0.324498585 SFSKEELMSS(ph)DLEETAGSTSIPKR ddPTM_K562_Paclitaxel_30min_R1 1 SFSKEELMSSDLEETAGSTSIPKR 24 2 O00567 O00567 NOP56 Nucleolar protein 56 1 SFSKEELMS(0.066)S(0.933)DLEET(0.001)AGSTSIPKR 106.63 2.33E-05 31334000 644.65 358.19 1150.9 576.82 401.4 502.63 447.41 594.38 776.39 1049.6 TRUE FALSE 653.6770889 397.2983955 860.3410608 539.825347 456.0774758 591.7643732 532.3037119 543.883709 850.9657285 835.6909439 0.78219956 0.475413068 1.02949669 0.645962902 0.545748975 0.7081139 0.636962403 0.650819197 1.018278031 1 9.706825692 -8.763807153 24.98864405 1.009139216 0.682194919 0.46116349 0.140419983 54.23648919 572331.113 0.112908691 0.034516288 1.72E-09 8.763807153 -0.326944297 SFSLASSSNS(ph)PISQR ddPTM_K562_Paclitaxel_30min_R1 3 SFSLASSSNSPISQR 15 0 Q9BXB4 Q9BXB4 OSBPL11 Oxysterol-binding protein-related protein 11 1 SFSLASS(0.001)SNS(0.998)PISQR;SFSLASS(0.014)S(0.001)NS(0.977)PIS(0.008)QR;SFS(0.001)LAS(0.039)S(0.032)S(0.032)NS(0.895)PIS(0.001)QR 255.23 4.09E-73 264984000 6199.69 5279.82 6600.62 5942.9 5155.28 5111.37 5793.54 6693.92 4454.79 7665.9 TRUE FALSE 6286.504788 5856.288603 4934.211846 5561.748993 5857.516416 6017.799702 6892.833971 6125.229714 4882.692484 6103.585372 1.029969175 0.95948336 0.808412031 0.911226542 0.959684523 0.985945036 1.129309013 1.003546168 0.799971195 1 12.57544125 -7.007165505 3.425985987 0.992257635 0.921626619 0.073900033 0.090624965 0.597050724 14.80286504 0.032206177 0.034717233 9.84E-08 7.007165505 -0.070631016 SFSS(ph)PENFQR ddPTM_K562_Paclitaxel_30min_R1 1 SFSSPENFQR 10 0 J3KPD3;G3V1T9;I3L521;F5GXV8;Q9Y580;F5GY08 J3KPD3;Q9Y580 RBM7 RNA-binding protein 7 1 SFS(0.119)S(0.881)PENFQR 143 0.00070892 40065000 3297.5 2876.4 3735.4 3532.5 3037.8 2774.1 2553.8 3290.8 3081 3628.3 TRUE FALSE 3343.675174 3190.455079 2792.352071 3305.941261 3451.59979 3266.047685 3038.370218 3011.225999 3376.943816 2888.850468 1.157441415 1.104402985 0.966596264 1.144379502 1.194800433 1.130570004 1.051757525 1.042361324 1.168957637 1 11.49627981 -11.21014829 3.369773808 0.999776153 1.103490273 0.19090802 0.0656455 28265219.19 45973810.92 68282.64485 0.016886088 6.16E-12 11.21014829 0.10371412 SFSTGS(ph)DLGHWVTTPPDIPGSR ddPTM_K562_Paclitaxel_30min_R1 1 SFSTGSDLGHWVTTPPDIPGSR 22 0 Q96AG3-3;Q96AG3 Q96AG3-3 SLC25A46 Solute carrier family 25 member 46 1 S(0.165)FS(0.165)T(0.165)GS(0.505)DLGHWVTTPPDIPGSR 61.417 0.012762 42757000 1416.8 1673.7 1725.9 1536 1184.8 1253.4 1127 1433.9 1951.9 1498.6 TRUE FALSE 1436.639571 1856.440226 1290.175199 1437.487835 1346.189819 1475.672891 1340.842367 1312.081245 2139.388716 1193.184497 1.20403808 1.55587022 1.081287263 1.204749004 1.128232743 1.236751646 1.123751079 1.099646574 1.793007469 1 10.22060142 -5.771826064 24.99945538 1.206978888 1.379954202 0.087701505 0.221246612 446.5463925 1074788.653 0.055492254 0.117528463 1.69E-06 5.771826064 0.172975313 SFT(ph)PDHVVYAR ddPTM_K562_Paclitaxel_30min_R1 2 SFTPDHVVYAR 11 0 Q6NZI2-3;Q6NZI2-2;Q6NZI2 Q6NZI2-3 PTRF Polymerase I and transcript release factor 1 S(0.126)FT(0.874)PDHVVYAR;S(0.154)FT(0.846)PDHVVYAR 110.15 0.0054718 20715000 4810.1 4902.3 5589.5 4803.3 4197.1 4044.7 4039 5005.5 4177.9 5803.5 TRUE FALSE 4877.45624 5437.549693 4178.361595 4495.237837 4768.816077 4761.970755 4805.379165 4580.251532 4579.205962 4620.743514 1.055556584 1.176769426 0.904261745 0.97283864 1.032045181 1.030563748 1.039957996 0.991236912 0.991010635 1 12.1739093 -5.751306825 24.99984863 0.998299533 1.116162991 0.527867127 0.045671388 162.6405656 401272.1397 0.011845694 0.030569359 1.77E-06 5.751306825 0.117863459 SFTPDHVVY(ph)AR ddPTM_K562_Paclitaxel_30min_R1 4 SFTPDHVVYAR 11 0 Q6NZI2-3;Q6NZI2-2;Q6NZI2 Q6NZI2-3 PTRF Polymerase I and transcript release factor 1 SFTPDHVVY(1)AR;SFTPDHVVY(1)AR;SFTPDHVVY(1)AR;SFTPDHVVY(1)AR 130.41 0.0015267 63652000 10671.3 11104.6 14674.3 14713.4 13045.6 11520.4 8426.35 9774.6 9027.76 9536 TRUE FALSE 10820.73112 12317.03778 10969.59148 13769.74838 14822.63158 13563.38119 10025.20592 8944.186719 9894.916685 7592.557966 1.425175965 1.622251399 1.444782052 1.813584887 1.952257941 1.786404694 1.320398997 1.178020209 1.303238873 1 12.8903703 -7.895861791 4.497927291 1.191823836 1.679129897 0.664705185 0.166898815 0.148189034 5.189854126 0.079847894 0.0526558 1.27E-08 7.895861791 0.487306061 SFVT(ph)PPQSHFVR ddPTM_K562_Paclitaxel_30min_R1 2 SFVTPPQSHFVR 12 0 H0YNU5;A0A3B3IT82;P54132;H0YLV8 H0YNU5 BLM Bloom syndrome protein 1 S(0.002)FVT(0.998)PPQSHFVR;S(0.025)FVT(0.975)PPQSHFVR 99.927 0.0099715 15197500 5190.1 5283.1 6684.1 5786.5 4949.1 4335 4916.6 6568.6 4044.8 6849.7 TRUE FALSE 5262.777413 5859.926724 4996.616287 5415.379789 5623.251209 5103.751384 5849.499184 6010.55643 4433.321113 5453.72738 0.964987255 1.07448105 0.916183729 0.992968554 1.031084031 0.935828109 1.072569048 1.102100639 0.812897456 1 12.41302687 -5.734381546 24.99933928 0.990194377 1.019733992 0.025404138 0.081820741 1195.512812 1104543.978 0.020134192 0.053239365 1.84E-06 5.734381546 0.029539615 SGAGSS(ph)PETK ddPTM_K562_Paclitaxel_30min_R1 1 SGAGSSPETK 10 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SGAGS(0.035)S(0.935)PET(0.03)K 109.72 0.0054153 10190000 2457.3 2395.6 5289.1 3255.8 2234.5 1932 1734.7 3164.2 2057 3604.2 TRUE FALSE 2491.709781 2657.159709 3953.80129 3046.98756 2538.87673 2274.613073 2063.850269 2895.38146 2254.584041 2869.662062 0.868293802 0.925948649 1.377793345 1.061793164 0.884730214 0.792641442 0.719196276 1.008962518 0.785661863 1 11.48666514 -6.787277292 4.939418473 0.852502842 1.073013783 0.279585845 0.151232255 0.241638523 14.75577132 0.048949931 0.05818509 1.63E-07 6.787277292 0.22051094 SGAMS(ph)PMSWNSDASTSEAS ddPTM_K562_Paclitaxel_30min_R1 2 SGAMSPMSWNSDASTSEAS 19 0 Q13158 Q13158 FADD FAS-associated death domain protein 1 S(0.169)GAMS(0.813)PMS(0.005)WNS(0.001)DAS(0.001)T(0.002)S(0.002)EAS(0.006);S(0.045)GAMS(0.951)PMS(0.004)WNSDASTSEAS 93.738 0.0013431 22024000 5495.8 5201.2 6338.4 5678.4 5312.4 5017.3 5343 6622.4 6019.6 6798.9 TRUE FALSE 5572.758156 5769.084605 4738.192528 5314.21284 6036.03882 5907.047709 6356.806358 6059.785784 6597.809476 5413.280448 1.029460456 1.065728011 0.875290422 0.981699155 1.115042695 1.091214055 1.174298361 1.119429492 1.218819076 1 12.40228742 -6.784239792 5.721212156 1.127990257 0.985085993 0.458403792 0.069868528 0.149660979 14.64169133 0.021576164 0.025487258 1.64E-07 6.784239792 -0.142904264 SGAQASS(ph)TPLS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 1 SGAQASSTPLSPTR 14 0 P02545-6;P02545;P02545-3;Q3BDU5;P02545-2 P02545-6;Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C 2 SGAQAS(0.036)S(0.579)T(0.384)PLS(0.833)PT(0.167)R 151.11 0.0004466 44157000 6120.2 5233.6 6571.4 5451.2 4639.9 4573.1 4552 5459.6 4713.7 5588.4 TRUE FALSE 6205.901682 5805.022147 4912.368796 5101.584431 5271.932934 5384.075075 5415.718237 4995.772902 5166.471946 4449.481012 1.394747312 1.304651516 1.104031859 1.146557186 1.184842214 1.210045635 1.217157287 1.122776541 1.161140351 1 12.11942135 -5.596050996 4.177420278 1.154724406 1.377860417 0.659795471 0.060240839 0.117445375 3.86894779 0.015175756 0.046840826 2.53E-06 5.596050996 0.223136011 SGAQASST(ph)PLS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 2 SGAQASSTPLSPTR 14 0 P02545-6;P02545;P02545-3;Q3BDU5;P02545-2 P02545-6;Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C 2 SGAQASS(0.243)T(0.756)PLS(0.982)PT(0.018)R;SGAQAS(0.074)S(0.378)T(0.549)PLS(0.677)PT(0.323)R 142.74 1.17E-05 53145000 10728.4 9321.5 11687.2 10122.1 8041.1 8264.5 7297.5 10376.3 9028.6 11804.9 TRUE FALSE 10878.6307 10339.25289 8736.621815 9472.913811 9136.433957 9730.093036 8682.162529 9494.768548 9895.837371 9399.0549 1.157417508 1.10003112 0.929521309 1.007858121 0.972058793 1.035220364 0.923727186 1.010183327 1.052854513 1 13.19829998 -5.595211459 5.379365834 0.991167853 1.144553056 0.670708405 0.03933385 0.09792734 4.997184453 0.009852678 0.027749763 2.54E-06 5.595211459 0.153385203 SGAQASSTPLS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 2 SGAQASSTPLSPTR 14 0 P02545-6;P02545;P02545-3;Q3BDU5;P02545-2 P02545-6;Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C 1 SGAQASSTPLS(0.729)PT(0.271)R;SGAQASSTPLS(0.996)PT(0.004)R 198.61 5.62E-09 317225000 3570.93 3010.85 4433.2 3863.2 3675.03 2769.22 2882.6 3628.7 2909.6 3822.71 TRUE FALSE 3620.934037 3339.584785 3313.983831 3615.431643 4175.631305 3260.302285 3429.558302 3320.419285 3189.08008 3043.639604 1.189672402 1.097233976 1.08882268 1.187864568 1.371920414 1.071185393 1.126795136 1.090937075 1.047785052 1 11.57158182 -8.460183175 1.092198638 1.008587328 1.170428796 0.355632171 0.078970061 0.624471041 1.339781009 0.077230027 0.027962276 3.47E-09 8.460183175 0.161841468 SGAQASSTPLSPT(ph)R ddPTM_K562_Paclitaxel_30min_R1 3 SGAQASSTPLSPTR 14 0 P02545-6;P02545;P02545-3;Q3BDU5;P02545-2 P02545-6;Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C 1 SGAQASSTPLS(0.331)PT(0.669)R;SGAQASSTPLS(0.008)PT(0.992)R;SGAQASSTPLS(0.003)PT(0.997)R 174.18 9.56E-06 353617000 4430.81 4259.85 5492.09 4791.62 3705.76 3708.02 3835.31 4520.51 4597.65 4826.48 TRUE FALSE 4492.85501 4724.954829 4105.543954 4484.30694 4210.547251 4365.585284 4563.040051 4136.464459 5039.274825 3842.840727 1.169149421 1.229547401 1.068361727 1.166925006 1.095686121 1.136030763 1.187413264 1.076407989 1.311341058 1 11.90795747 -5.73873043 24.99947282 1.135320008 1.199348406 0.103510579 0.080222728 550.354404 605856.4002 0.018795459 0.049652896 1.83E-06 5.73873043 0.064028398 SGASGS(ph)WDCGLSR ddPTM_K562_Paclitaxel_30min_R1 1 SGASGSWDCGLSR 13 0 Q99704-3;Q99704 Q99704-3 DOK1 Docking protein 1 1 S(0.32)GAS(0.006)GS(0.674)WDCGLSR 99.991 0.0085612 8934400 556.78 677.22 987.76 691.51 564.01 473.18 497.41 646.85 645.29 699.81 TRUE FALSE 564.5766378 751.1611698 738.3877715 647.1596437 640.8377108 557.0918292 591.7909508 591.896055 707.2729877 557.1883379 1.013259969 1.348127947 1.325203206 1.161473778 1.150127645 0.999826793 1.062102185 1.062290818 1.269360716 1 9.122021252 -6.727934439 2.482145711 1.083048285 1.238857922 0.238197421 0.111203004 0.381609953 4.812375934 0.036165972 0.046832097 1.87E-07 6.727934439 0.155809637 SGASSLWDPAS(ph)PAPTSGPRPR ddPTM_K562_Paclitaxel_30min_R1 1 SGASSLWDPASPAPTSGPRPR 21 1 A0A087WVG4;A2AB22;A2AB23;E9PQZ5;A0A140TA01;E9PQT8;O43189-2;O43189 A0A087WVG4 PHF1 PHD finger protein 1 1 S(0.001)GAS(0.001)SLWDPAS(0.707)PAPT(0.044)S(0.246)GPRPR 64.2 0.017924 0 512.11 540.39 582.6 693.16 535.91 537.41 338.01 453.7 652.3 506.37 TRUE FALSE 519.28112 599.3916077 435.5154245 648.7038201 608.910015 632.7121179 402.145633 415.1553531 714.9563296 403.171516 1.287990593 1.486691355 1.080223694 1.60900211 1.510300184 1.569337348 0.997455467 1.029723918 1.773330459 1 8.655249906 -11.26776746 4.862272618 0.999900327 1.362202925 0.16195456 0.252759427 0.000274404 4.13E-05 0.245865844 0.059614895 5.40E-12 11.26776746 0.362302599 SGAVQGAGSLGPGS(ph)PVR ddPTM_K562_Paclitaxel_30min_R1 4 SGAVQGAGSLGPGSPVR 17 0 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 SGAVQGAGSLGPGS(1)PVR;SGAVQGAGSLGPGS(1)PVR;SGAVQGAGSLGPGS(1)PVR;SGAVQGAGSLGPGS(1)PVR 210.12 3.80E-140 108115000 4665.02 4374.95 5687.5 4731.6 4212.62 5169.5 4373.92 5181.5 2735.06 5900.8 TRUE FALSE 4730.344673 4852.621836 4251.620283 4428.136354 4786.450164 6086.238242 5203.848487 4741.299233 2997.774734 4698.213721 1.006838972 1.032865281 0.904943993 0.942514883 1.018780849 1.29543665 1.107622768 1.009170616 0.638066915 1 12.19789663 -8.589561514 11.01353153 0.819606931 1.044225177 0.324451015 0.128275405 0.632684729 100.9653383 0.090259129 0.034045453 2.57E-09 8.589561514 0.224618246 SGAVTFSS(ph)QGR ddPTM_K562_Paclitaxel_30min_R1 1 SGAVTFSSQGR 11 0 O75717-2;O75717 O75717-2 WDHD1 WD repeat and HMG-box DNA-binding protein 1 1 SGAVTFS(0.075)S(0.925)QGR 91.093 0.016698 22890000 2291.4 1879.4 2032.4 1829 1484.7 1681.1 2125.3 2208.8 1738 2894.2 TRUE FALSE 2323.48667 2084.599248 1519.295484 1711.696126 1686.941276 1979.219481 2528.56458 2021.148653 1904.942666 2304.360451 1.008300011 0.904632453 0.659313296 0.742807457 0.732064845 0.858901861 1.097295598 0.87709744 0.826668703 1 11.17015069 -7.530161294 24.96823487 0.945462878 0.801953693 0.257226864 0.112545148 265.3082109 909599.1707 0.045833951 0.035578255 2.95E-08 7.530161294 -0.143509184 SGCSEAQPPES(ph)PETR ddPTM_K562_Paclitaxel_30min_R1 2 SGCSEAQPPESPETR 15 0 A0A494BZT8;Q9Y6A5;H0Y8F2;A0A494C117 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 SGCSEAQPPES(0.594)PET(0.406)R;SGCSEAQPPES(0.624)PET(0.376)R 149.19 2.05E-05 138536400 1569.18 1525.03 1931.82 1792.9 1656.97 1832.86 1378.34 1771.64 1551.62 1859.26 TRUE FALSE 1591.153361 1691.537933 1444.108149 1677.911419 1882.677367 2157.891986 1639.87282 1621.128124 1700.660034 1480.341791 1.074855395 1.142667148 0.975523461 1.13346217 1.271785595 1.457698485 1.107766348 1.095103937 1.148829307 1 10.5317146 -6.522381773 24.99999862 1.195880354 1.069232561 0.147087202 0.121251337 32.60065201 1640023.085 0.037599251 0.049113524 3.00E-07 6.522381773 -0.126647793 SGDAAIVDMVPGKPMCVESFSDYPPLGR ddPTM_K562_Paclitaxel_30min_R1 1 SGDAAIVDMVPGKPMCVESFSDYPPLGR 28 1 A0A087WVQ9;Q5VTE0;P68104 A0A087WVQ9 EEF1A1;EEF1A1P5 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1 0 71.091 0.0030735 9837200 1364.6 786.74 2151.8 1544.7 1030.1 1037.2 968.07 1528.6 1253.7 2079.2 FALSE TRUE 1383.70861 872.6389338 1608.551477 1445.629856 1170.41706 1221.132857 1151.756229 1398.735889 1374.123487 1655.457899 0.835846451 0.527128436 0.971665591 0.873250753 0.707005029 0.737640539 0.695732721 0.844923867 0.830056438 1 10.69301461 -9.158414252 1.373746372 0.99826523 0.766183891 0.269983692 0.113625124 0.895909486 3.429900929 0.109181391 0.032621447 6.94E-10 9.158414252 -0.23208134 SGELGLPGAPESSTASAPGEPSPPS(ph)PPCRRPGPDCR ddPTM_K562_Paclitaxel_30min_R1 1 SGELGLPGAPESSTASAPGEPSPPSPPCRRPGPDCR 36 2 Q5QP82;Q5QP82-2 Q5QP82 DCAF10 DDB1- and CUL4-associated factor 10 1 SGELGLPGAPES(0.003)S(0.003)T(0.003)AS(0.002)APGEPS(0.161)PPS(0.829)PPCRRPGPDCR 64.726 1.72E-05 70434000 2363.8 2240.2 2932.5 2610.5 2114.4 2057.2 2095.8 2676.3 2905.2 2927 TRUE FALSE 2396.900493 2484.792612 2192.154106 2443.074214 2402.417077 2422.015535 2493.467109 2448.93161 3184.257441 2330.475793 1.028502634 1.066216873 0.940646589 1.048315636 1.030869784 1.039279422 1.069939073 1.050829027 1.366355081 1 11.18640881 -8.558552751 24.99854667 1.191649392 1.032764434 0.311974398 0.088625234 181.6146692 127263.3663 0.054334122 0.020536515 2.76E-09 8.558552751 -0.158884957 SGET(ph)AANIARELAEQT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SGETAANIARELAEQTR 17 1 E7EUW2;E7ESV6;E7ETE3;E7EVD6;E7EW95;E9PBG4;E7EN28;E7EX52;E7EUP0;E7ENK1;E7ES20;E7EMR3;Q9HAR2;Q9HAR2-4;Q9HAR2-2;Q9HAR2-3;H0Y9K5 E7EUW2 ADGRL3;LPHN3 Latrophilin-3 2 S(0.003)GET(0.997)AANIARELAEQT(1)R 77.137 0.015462 8974700 0 66.808 0 0 0 0 0 0 0 0 TRUE FALSE 0 74.10232337 0 0 0 0 0 0 0 0 0 SGFGEISS(ph)PVIR ddPTM_K562_Paclitaxel_30min_R1 3 SGFGEISSPVIR 12 0 G3V1T4;P57740 G3V1T4 NUP107 Nuclear pore complex protein Nup107 1 SGFGEIS(0.184)S(0.816)PVIR;SGFGEIS(0.089)S(0.911)PVIR;SGFGEIS(0.007)S(0.993)PVIR 201.09 2.01E-06 175954000 10734.6 10424.6 14537.6 11791.9 10202.5 10210.4 8423.3 11127.3 9549.7 11862.1 TRUE FALSE 10884.91752 11562.79308 10867.40308 11035.62031 11592.25323 12021.07108 10021.5772 10181.96641 10466.99135 9444.597509 1.152502 1.224275896 1.15064756 1.168458508 1.227395156 1.272798663 1.061090977 1.078073089 1.108251712 1 13.2052736 -7.781439203 24.98855065 1.068359969 1.198136839 0.706832319 0.043294218 145.9801746 182391.5166 0.018406073 0.012427481 1.65E-08 7.781439203 0.12977687 SGGGLHSVAEGVRLS(ph)PEPGR ddPTM_K562_Paclitaxel_30min_R1 1 SGGGLHSVAEGVRLSPEPGR 20 1 Q9NWK9-2;Q9NWK9 Q9NWK9-2 ZNHIT6 Box C/D snoRNA protein 1 1 SGGGLHSVAEGVRLS(1)PEPGR 101.53 0.00043419 338010000 2212.2 2253.1 2963.2 2355 2234.6 2125.3 2198.6 2562.9 1937.7 2793.2 TRUE FALSE 2243.177625 2499.101077 2215.103512 2203.960841 2538.990352 2502.192114 2615.772873 2345.165648 2123.824743 2223.944307 1.008648291 1.123724668 0.996024723 0.991014403 1.141660942 1.125114557 1.176186321 1.054507364 0.954981083 1 11.11890494 -5.187093572 20.33418116 1.067942171 1.008641396 0.043252243 0.072234662 54460.89701 14887085.68 0.018917089 83.38287741 6.50E-06 5.187093572 -0.059300774 SGGGLHSVAEGVRLS(ph)PEPGREGVR ddPTM_K562_Paclitaxel_30min_R1 1 SGGGLHSVAEGVRLSPEPGREGVR 24 2 Q9NWK9-2;Q9NWK9 Q9NWK9-2 ZNHIT6 Box C/D snoRNA protein 1 1 SGGGLHSVAEGVRLS(1)PEPGREGVR 55.575 0.0090785 31783000 2000.1 1810.1 2091.3 2317.6 2073.8 1788.7 1438.7 1679.3 1817.1 2348.2 TRUE FALSE 2028.107571 2007.732839 1563.32545 2168.959509 2356.28667 2105.90083 1711.685814 1536.632983 1991.640574 1869.635551 1.084760915 1.073863213 0.836165877 1.16009749 1.260291969 1.126369698 0.915518435 0.821889048 1.065256046 1 10.86854136 -7.765366862 24.95731908 0.935823277 1.088866643 0.254704686 0.115858275 142.9815912 908566.2196 0.050839482 0.035722337 1.72E-08 7.765366862 0.153043366 SGGGYGGDRSS(ph)GGGYSGDR ddPTM_K562_Paclitaxel_30min_R1 2 SGGGYGGDRSSGGGYSGDR 19 1 A0A075B7F4;Q92804-2;Q92804 A0A075B7F4 TAF15 TATA-binding protein-associated factor 2N 1 SGGGYGGDRS(0.21)S(0.79)GGGYSGDR;SGGGYGGDRS(0.382)S(0.618)GGGYSGDR 118.66 0.00027719 9481100 4404.4 3998.6 5532.1 4544.1 4232.1 4083.8 3981.6 4948.2 4554.6 5412.8 TRUE FALSE 4466.075189 4435.18067 4135.452935 4252.661765 4808.58367 4808.004591 4737.087815 4527.819524 4992.08968 4309.668389 1.036292073 1.02912342 0.959575671 0.986772387 1.115766513 1.115632145 1.099176871 1.050619007 1.15834659 1 12.07336115 -6.75894725 24.99999423 1.094202575 1.001713542 0.476993626 0.044477975 53.91974473 540894.1478 0.013000583 0.016007733 1.74E-07 6.75894725 -0.092489033 SGGIVIS(ph)PFR ddPTM_K562_Paclitaxel_30min_R1 1 SGGIVISPFR 10 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 SGGIVIS(1)PFR 85.924 0.025223 7895600 1572.2 1449.1 1847.5 1704.9 1558.2 1775 1867.4 1910.8 993.96 1890.4 TRUE FALSE 1594.215651 1607.317639 1381.075775 1595.555345 1770.453221 2089.771328 2221.729402 1748.465613 1089.434299 1505.135442 1.059184181 1.067889037 0.917575745 1.060074263 1.176275019 1.388427426 1.476099319 1.161666627 0.723811471 1 10.5556776 -6.705546014 4.160359298 1.190973429 1.016631221 0.077366715 0.197612609 0.474930291 16.73344451 0.064625763 0.082514722 1.97E-07 6.705546014 -0.174342209 SGGIVIS(ph)PFRLEELTNR ddPTM_K562_Paclitaxel_30min_R1 2 SGGIVISPFRLEELTNR 17 1 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 SGGIVIS(1)PFRLEELTNR;SGGIVIS(1)PFRLEELTNR 101.49 0.0014331 289610000 3334.1 3396.4 4534.2 3976.8 2866.4 3275.7 3581.1 4087.8 3761.2 4657.3 TRUE FALSE 3380.787687 3767.230438 3389.485132 3721.745847 3256.852209 3856.599402 4260.59503 3740.515875 4122.480065 3708.139704 0.911720689 1.015935412 0.91406619 1.003669264 0.878298141 1.040036166 1.148984497 1.008731109 1.111738067 1 11.85647988 -7.463928546 7.965210056 1.071819777 0.950833128 0.520882809 0.056448955 0.24168263 30.05327307 0.018518045 0.016231765 3.44E-08 7.463928546 -0.120986649 SGGLQT(ph)PECLS(ph)REGS(ph)PIPHDPEFGSK ddPTM_K562_Paclitaxel_30min_R1 1 SGGLQTPECLSREGSPIPHDPEFGSK 26 1 P85037-2;P85037 P85037-2 FOXK1 Forkhead box protein K1 3 S(0.149)GGLQT(0.884)PECLS(0.984)REGS(0.982)PIPHDPEFGSK 51.811 0.014505 11450000 1700.5 1288.8 2732.5 2013 1169.2 972.05 1113.4 1788.4 1462.8 1894.2 TRUE FALSE 1724.312246 1429.515542 2042.64658 1883.89519 1328.464835 1144.429419 1324.661838 1636.464257 1603.308476 1508.161 1.143321069 0.947853407 1.354395572 1.249134005 0.880850807 0.758824435 0.878329195 1.085072653 1.063088407 1 10.55857473 -6.764933389 24.99877122 0.936036123 1.170454376 0.42441438 0.130589954 96.70663224 691912.2984 0.044064008 0.051976385 1.72E-07 6.764933389 0.234418253 SGGLQT(ph)PECLSR ddPTM_K562_Paclitaxel_30min_R1 3 SGGLQTPECLSR 12 0 P85037-2;P85037 P85037-2 FOXK1 Forkhead box protein K1 1 SGGLQT(1)PECLSR;SGGLQT(0.999)PECLSR;SGGLQT(0.999)PECLSR 121.13 0.0057633 81272000 8863.4 8256.9 12935.7 11743.9 9462.1 8663.6 8027.9 10045.4 7066 10280.2 TRUE FALSE 8987.514946 9158.416265 9669.922548 10990.69882 10750.99821 10199.96782 9551.152117 9191.980569 7744.720872 8185.089597 1.098035011 1.118914602 1.181407049 1.34277074 1.313485709 1.246164467 1.166896465 1.123015266 0.946198668 1 12.99878249 -8.516351871 2.113777956 0.971393438 1.217762675 0.606649502 0.074921065 0.251166144 2.049925739 0.072504583 0.023896974 3.05E-09 8.516351871 0.246369236 SGGNSYGSGGASYNPGS(ph)HGGYGGGSGGGSSYQGK ddPTM_K562_Paclitaxel_30min_R1 1 SGGNSYGSGGASYNPGSHGGYGGGSGGGSSYQGK 34 0 Q12906;Q12906-7;K7ELV3 Q12906 ILF3 Interleukin enhancer-binding factor 3 1 SGGNSYGSGGAS(0.001)Y(0.001)NPGS(0.956)HGGY(0.038)GGGS(0.001)GGGS(0.001)SYQGK 95.541 7.41E-11 13805000 915.39 1072.7 1661.9 1010.3 693.73 781.33 745.41 1121.6 1093.3 1039.2 TRUE FALSE 928.2082842 1189.821014 1242.332791 945.5038799 788.2277709 919.8879051 886.8476562 1026.313079 1198.31635 827.4104696 1.121823228 1.438005751 1.501470959 1.142726512 0.952644183 1.111767302 1.071835188 1.2403917 1.448273129 1 9.692459402 -6.296528057 18.95406667 1.136646996 1.362189784 0.281683592 0.157538305 42.67818708 23053.21709 0.046347932 0.068767321 5.05E-07 6.296528057 0.225542788 SGGSGHAVAEPAS(ph)PEQELDQNKGK ddPTM_K562_Paclitaxel_30min_R1 3 SGGSGHAVAEPASPEQELDQNKGK 24 1 P46013 P46013 MKI67 Antigen KI-67 1 SGGSGHAVAEPAS(1)PEQELDQNKGK;SGGSGHAVAEPAS(1)PEQELDQNKGK;SGGSGHAVAEPAS(1)PEQELDQNKGK 128.29 1.37E-10 43023000 5586.2 4071.48 13381.1 6448.6 4667.5 3562.9 3149.18 5440.3 6149.5 8565.8 TRUE FALSE 5664.424035 4516.017955 10002.87581 6035.015659 5303.292521 4194.730289 3746.720465 4978.112558 6740.186952 6820.085258 0.830550326 0.662164443 1.466678998 0.884888595 0.777599153 0.615055403 0.549365635 0.729919403 0.988284852 1 12.73557406 SGLCS(ph)PSYVAVTPFSLR ddPTM_K562_Paclitaxel_30min_R1 2 SGLCSPSYVAVTPFSLR 17 0 A0A0B4J1R1;P01106;H0YBG3;H0YBT0;A0A087WUS5;P01106-2 A0A0B4J1R1 MYC Myc proto-oncogene protein 1 S(0.383)GLCS(0.589)PS(0.027)YVAVTPFSLR;SGLCS(0.914)PS(0.085)YVAVTPFSLR 185.63 1.33E-10 26071000 3349.2 2911.4 3978.5 3124.1 2198.18 2040.01 2497.2 3437.3 2373.24 4332.7 TRUE FALSE 3396.099133 3229.276498 2974.07847 2923.734209 2497.609331 2401.77713 2971.030664 3145.27991 2601.200306 3449.693362 0.98446406 0.936105375 0.862128357 0.84753452 0.724009084 0.696229165 0.861244856 0.911756374 0.754038123 1 11.75225241 -5.761593354 1.744909672 0.815910895 0.98575805 0.275566354 0.085205233 0.533235719 2.91856883 0.025056437 0.110081744 1.73E-06 5.761593354 0.169847155 SGLLNSTS(ph)DSDLVR ddPTM_K562_Paclitaxel_30min_R1 2 SGLLNSTSDSDLVR 14 0 Q12809-7;Q12809-4;Q12809;Q86U57;Q12809-5 Q12809-7 KCNH2 Potassium voltage-gated channel subfamily H member 2 1 SGLLNS(0.073)T(0.195)S(0.731)DS(0.001)DLVR;SGLLNS(0.047)T(0.182)S(0.77)DS(0.002)DLVR 193.3 4.27E-07 140068000 6792.2 6834.7 8503 6838.1 5912.1 6170.8 5873.5 6977.9 6551.5 7896.1 TRUE FALSE 6887.311756 7580.935659 6356.312486 6399.534872 6717.428113 7265.104738 6987.965963 6385.08384 7180.800848 6286.870486 1.09550718 1.205836143 1.011045559 1.017920583 1.068485207 1.155599555 1.111517404 1.015621978 1.142190039 1 12.61812633 -9.915284276 0.008736933 3.36E-05 2.113972693 0.108506448 0.063955052 10814.48491 30.17752603 3759.347114 3541.026923 1.22E-10 9.915284276 2.113939129 SGLS(ph)LEELR ddPTM_K562_Paclitaxel_30min_R1 1 SGLSLEELR 9 0 A0A087WWA3;Q4R9M9;O60333-2;O60333;O60333-4 A0A087WWA3 KIF1B;KIF1Bbeta Kinesin-like protein;Kinesin-like protein KIF1B 1 S(0.026)GLS(0.974)LEELR 86.189 0.023608 5704700 1362.8 1207.3 2057.3 1536.4 1574.5 1577.5 1336 1614.3 1138.7 1804.3 TRUE FALSE 1381.883405 1339.117097 1537.909171 1437.862181 1788.973557 1857.247476 1589.499026 1477.155139 1248.077223 1436.58267 0.961924039 0.932154567 1.070533011 1.000890663 1.245298022 1.29282325 1.106444522 1.028242349 0.86878204 1 10.4884253 -6.564495408 24.99418557 1.104475959 0.991450673 0.139168679 0.117571132 284.2796976 170731.4915 0.038214831 0.049335179 2.73E-07 6.564495408 -0.113025287 SGLSSALGEMVS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 SGLSSALGEMVSPR 14 0 Q1MSJ5-1;Q1MSJ5;Q1MSJ5-2 Q1MSJ5-1 CSPP1 Centrosome and spindle pole-associated protein 1 1 SGLSSALGEMVS(1)PR 156.96 1.27E-40 0 854.36 750.21 843.75 677.71 617.64 715.4 702.12 902.31 649.91 1225 TRUE FALSE 866.3236759 832.1204648 630.7348771 634.2447139 701.7730247 842.2661453 835.3436047 825.6531335 712.3367594 975.3443276 0.888223422 0.85315559 0.646679187 0.650277749 0.719513104 0.863557742 0.856460207 0.846524771 0.730343879 1 9.929767816 -7.265624171 24.6799869 0.849602802 0.74575887 0.242909878 0.094098736 508.9584054 3001592.606 0.034557081 0.0315415 5.42E-08 7.265624171 -0.103843932 SGLTVPT(ph)SPK ddPTM_K562_Paclitaxel_30min_R1 2 SGLTVPTSPK 10 0 Q53EL6;Q53EL6-2;Q5VZS7 Q53EL6 PDCD4 Programmed cell death protein 4 1 SGLTVPT(0.982)S(0.017)PK;SGLTVPT(0.936)S(0.064)PK 113.67 0.010616 44073000 11305.6 9189.7 20171.4 12289 9490.5 8910 8083 11546.8 7368.1 14770.8 TRUE FALSE 11463.91328 10193.06252 15078.88059 11500.83854 10783.26678 10490.0634 9616.707054 10565.82727 8075.838927 11760.50285 0.974780877 0.866719957 1.282162913 0.977920646 0.916905247 0.891974053 0.817712233 0.898416284 0.686691635 1 13.52166213 -6.897392918 2.278477828 0.850904879 1.034701975 0.297071439 0.121967418 0.377701688 3.995935698 0.042313137 0.049449398 1.27E-07 6.897392918 0.183797095 SGLTVPT(ph)SPKGR ddPTM_K562_Paclitaxel_30min_R1 1 SGLTVPTSPKGR 12 1 Q53EL6;Q53EL6-2;Q5VZS7 Q53EL6 PDCD4 Programmed cell death protein 4 1 SGLT(0.042)VPT(0.479)S(0.479)PKGR 109.44 0.025599 13859000 2675.2 2336 5220.1 2874.9 2335.5 2345.4 2066.9 2844 4214.3 3732.6 TRUE FALSE 2712.661054 2591.05238 3902.221194 2690.516782 2653.63464 2761.323759 2459.083485 2602.384448 4619.102345 2971.894071 0.912771784 0.871852199 1.313041818 0.905320552 0.892910237 0.929146091 0.827446546 0.875665278 1.554262108 1 11.53716698 -8.735870662 24.99564416 1.277131591 0.944139308 0.361901673 0.17848359 202.6055176 198065.5484 0.117578366 0.044405145 1.84E-09 8.735870662 -0.332992283 SGMS(ph)PEQSR ddPTM_K562_Paclitaxel_30min_R1 1 SGMSPEQSR 9 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.001)GMS(0.999)PEQSR 102.05 0.010143 17796000 1630.5 1178.1 1666.1 1642 1265.6 1311 1326.4 1566.7 1470.9 1721.7 TRUE FALSE 1653.332031 1306.728942 1245.472449 1536.689469 1437.996147 1543.487443 1578.077476 1433.599056 1612.186517 1370.816595 1.206092804 0.953248558 0.908562424 1.121002966 1.049006958 1.125962035 1.151195194 1.045799315 1.176077473 1 10.42081985 -6.362787413 21.65791484 1.099130089 1.015457853 0.124789701 0.087551635 22.9167384 4885.184498 0.024169039 0.03584851 4.34E-07 6.362787413 -0.083672236 SGNFGGS(ph)RNMGGPYGGGNYGPGGSGGSGGYGGR ddPTM_K562_Paclitaxel_30min_R1 1 SGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGR 33 1 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 S(0.009)GNFGGS(0.933)RNMGGPY(0.052)GGGNY(0.005)GPGGSGGSGGYGGR 49.744 0.0039519 14096000 148.26 268.57 306.73 279.94 114.56 318.27 237.67 0 343.71 307.69 TRUE FALSE 150.3360974 297.8933808 229.2922179 261.9859014 130.1650115 374.7107158 282.7666418 0 376.7248812 244.9826091 0.613660284 1.215977664 0.935953041 1.06940612 0.531323476 1.529540065 1.154231489 0 1.537761732 1 7.936535528 SGNFGGSRNMGGPYGGGNY(ph)GPGGSGGSGGYGGR ddPTM_K562_Paclitaxel_30min_R1 1 SGNFGGSRNMGGPYGGGNYGPGGSGGSGGYGGR 33 1 P22626;P22626-2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 1 SGNFGGS(0.095)RNMGGPY(0.113)GGGNY(0.789)GPGGS(0.003)GGSGGYGGR 81.406 8.28E-07 15570000 345.19 199.92 376.79 249.29 324.23 131.84 298.92 171.31 371.4 231.74 TRUE FALSE 350.023725 221.7479417 281.6647044 233.3016552 368.3956153 155.2199729 355.6385095 156.7561462 407.0746295 184.5112608 1.897031777 1.201812511 1.526544793 1.264430443 1.996602341 0.841249321 1.927462356 0.849574956 2.2062319 1 7.527565057 -10.44150574 17.45061202 1.000006937 1.492367586 0.102125061 0.457339977 0 0 0.393597385 0.095461388 3.62E-11 10.44150574 0.492360649 SGPEAEGLGSETSPT(ph)VDDEEEMLYGDSGSLFSPSKEEARR ddPTM_K562_Paclitaxel_30min_R1 1 SGPEAEGLGSETSPTVDDEEEMLYGDSGSLFSPSKEEARR 40 2 Q10570 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 1 SGPEAEGLGS(0.001)ET(0.002)S(0.005)PT(0.306)VDDEEEMLY(0.076)GDS(0.083)GS(0.251)LFS(0.207)PS(0.069)KEEARR 47.534 0.023236 27362000 530.69 546.73 693.07 653.72 511.13 373.45 348.1 627.47 496.28 935.55 TRUE FALSE 538.1212973 606.4238303 518.0959067 611.7933251 580.7545595 439.676114 414.1501578 574.162507 543.9499114 744.8843965 0.722422566 0.814118047 0.695538676 0.821326541 0.779657303 0.590260873 0.555992527 0.770807537 0.730247424 1 9.540872731 -11.96063939 7.15396281 1.146582995 0.719671058 0.502963191 0.08349061 0.047477738 0.000261219 0.019662732 0.021315747 1.09E-12 11.96063939 -0.426911936 SGPEAEGLGSETSPTVDDEEEMLYGDSGS(ph)LFSPSKEEARR ddPTM_K562_Paclitaxel_30min_R1 1 SGPEAEGLGSETSPTVDDEEEMLYGDSGSLFSPSKEEARR 40 2 Q10570 Q10570 CPSF1 Cleavage and polyadenylation specificity factor subunit 1 1 SGPEAEGLGS(0.002)ET(0.003)S(0.007)PT(0.054)VDDEEEMLY(0.046)GDS(0.121)GS(0.364)LFS(0.301)PS(0.101)KEEARR 46.259 0.0021178 27073000 1467.1 1418.6 2369.8 1306.6 1094.2 1404.2 1081.7 1596.5 1781.5 1922 TRUE FALSE 1487.643926 1573.487545 1771.514681 1222.800524 1243.248565 1653.215154 1286.946928 1460.86736 1952.621035 1530.295345 0.972128636 1.028224748 1.157629268 0.799061781 0.812423934 1.080324239 0.840979444 0.95463099 1.275976589 1 10.5795944 SGPIS(ph)PGIHSCDLTVEGLATVTR ddPTM_K562_Paclitaxel_30min_R1 2 SGPISPGIHSCDLTVEGLATVTR 23 0 Q9BUB4-2;Q9BUB4 Q9BUB4-2 ADAT1 tRNA-specific adenosine deaminase 1 1 S(0.016)GPIS(0.984)PGIHSCDLTVEGLATVTR;S(0.027)GPIS(0.973)PGIHSCDLTVEGLATVTR 113.05 7.69E-06 36669000 2806 2860 3015.9 2507.64 2329.91 2030.56 2361.29 3208.3 2906.1 3363.5 TRUE FALSE 2845.292657 3172.264472 2254.498745 2346.811194 2647.283188 2390.651306 2809.332451 2935.734889 3185.24389 2678.016854 1.062462566 1.184557322 0.84185383 0.876324281 0.988523722 0.892694645 1.049034642 1.096234658 1.189403975 1 11.38694932 -7.981463011 6.456961103 1.100973725 0.973548712 0.224463958 0.102008617 0.244808748 39.90210947 0.047352117 0.03082916 1.04E-08 7.981463011 -0.127425013 SGPLSPAAVPGNQMPPRPPS(ph)GQSDSIMHPSMNQSSIAQDR ddPTM_K562_Paclitaxel_30min_R1 1 SGPLSPAAVPGNQMPPRPPSGQSDSIMHPSMNQSSIAQDR 40 1 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;A0A087WUV6 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 SGPLSPAAVPGNQMPPRPPS(0.543)GQS(0.252)DS(0.166)IMHPS(0.032)MNQS(0.006)S(0.001)IAQDR 72.348 5.44E-08 10867000 231.55 372.34 251.15 218.62 288.66 319.42 262.23 482.98 361.79 406.42 TRUE FALSE 234.7924144 412.9933404 187.7440763 204.5986917 327.9803791 376.0646521 311.9867736 441.9478343 396.541546 323.5913809 0.725583029 1.27628041 0.580188742 0.63227485 1.013563396 1.162159051 0.964138083 1.36575898 1.225439148 1 8.338029371 -6.981116752 6.091231619 1.148886495 0.820083741 0.378679137 0.204816095 0.188657592 24.94341299 0.067048277 0.074356192 1.04E-07 6.981116752 -0.328802754 SGPPS(ph)PPSTATSFGGPRPR ddPTM_K562_Paclitaxel_30min_R1 1 SGPPSPPSTATSFGGPRPR 19 1 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2;A0A087X0E3 A0A0A0MS59 SRCAP Helicase SRCAP 1 SGPPS(0.999)PPS(0.001)TATSFGGPRPR 148.19 2.38E-12 189120000 1465.5 1381.5 1892.4 1599.3 1514 1274.9 972.61 1567.1 1317.8 2016.4 TRUE FALSE 1486.021521 1532.336842 1414.640215 1496.728056 1720.232432 1500.985615 1157.15767 1433.965073 1444.380578 1605.456573 0.9256068 0.954455491 0.881145114 0.932275641 1.071491102 0.934927571 0.720765475 0.8931821 0.899669665 1 10.64876793 -7.546301571 24.99996553 0.863551914 0.953460924 0.159502983 0.07846964 359.9339304 384166.0054 0.029996894 0.023236718 2.84E-08 7.546301571 0.089909011 SGPPSPPS(ph)TATSFGGPRPR ddPTM_K562_Paclitaxel_30min_R1 1 SGPPSPPSTATSFGGPRPR 19 1 A0A0A0MS59;A0A0C4DFX4;Q6ZRS2-3;Q6ZRS2-2;Q6ZRS2;A0A087X0E3 A0A0A0MS59 SRCAP Helicase SRCAP 1 S(0.001)GPPS(0.101)PPS(0.747)T(0.149)AT(0.002)SFGGPRPR 85.176 0.0028163 196880000 1487.7 1322.5 1750.4 1541.3 1224.9 1467.4 1059.8 1579.9 1150.8 1408.3 TRUE FALSE 1508.53239 1466.895022 1308.489871 1442.447917 1391.752118 1727.622787 1260.891517 1445.677634 1261.339482 1121.287687 1.345357135 1.308223607 1.166952858 1.286420901 1.241208776 1.540748915 1.124503133 1.289301265 1.124902642 1 10.13094076 -8.974984037 1.338159957 0.998726966 1.293527201 0.442343171 0.10567123 0.419750086 1.696345657 0.098720264 0.030144789 1.06E-09 8.974984037 0.294800235 SGPS(ph)PLSSPNGK ddPTM_K562_Paclitaxel_30min_R1 1 SGPSPLSSPNGK 12 0 O75179-4;O75179-6;O75179-2;O75179;H0YM23;O75179-7 O75179-4 ANKRD17 Ankyrin repeat domain-containing protein 17 1 S(0.003)GPS(0.997)PLSSPNGK 135.81 0.00033735 13528000 2771.3 2661.6 4879.6 3243.1 2386.3 2237.1 2049.3 3494.9 2536.1 3340.8 TRUE FALSE 2810.10675 2952.202489 3647.68463 3035.102082 2711.35446 2633.818275 2438.143977 3197.986431 2779.703737 2659.943126 1.056453697 1.10987429 1.371339332 1.141040217 1.019327983 0.990178417 0.916615078 1.202276244 1.045023749 1 11.37717968 -6.663597781 4.870168622 1.031708646 1.184394356 0.318963217 0.101340553 0.26626881 10.51822396 0.032016712 0.041439203 2.17E-07 6.663597781 0.152685709 SGQGFHGNSEVNAILS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 SGQGFHGNSEVNAILSPR 18 0 C9JW01;A0A0A0MR59;Q8TB72-2;Q8TB72-4;Q8TB72-3;Q8TB72 C9JW01 PUM2 Pumilio homolog 2 1 SGQGFHGNSEVNAILS(1)PR 153.82 2.14E-09 34067000 672.81 758.52 647.72 580.17 435.43 535.49 603.82 738.77 554.42 760.24 TRUE FALSE 682.2314158 841.3377787 484.1950751 542.9604929 494.7429379 630.4516328 718.3916928 676.0068772 607.6745182 605.3026707 1.127091369 1.389945592 0.799922251 0.897006604 0.817348018 1.041547747 1.186830536 1.11680802 1.003918449 1 9.241512906 -5.754137227 24.99992386 0.987488775 1.258518466 0.421337932 0.129101474 174.7261947 598184.617 0.036335337 0.092031993 1.76E-06 5.754137227 0.271029692 SGRS(ph)PTGNTPPVIDSVSEK ddPTM_K562_Paclitaxel_30min_R1 1 SGRSPTGNTPPVIDSVSEK 19 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 1 S(0.103)GRS(0.445)PT(0.445)GNT(0.008)PPVIDSVSEK 86.213 0.002431 23917000 1147.4 1150.5 1990.7 1476.2 1093.8 962.23 953.89 1314.5 970.26 1672.8 TRUE FALSE 1163.46714 1276.115481 1488.123164 1381.523139 1242.794078 1132.86798 1134.885648 1202.82502 1063.457808 1331.882442 0.873550926 0.958129217 1.117308193 1.03727108 0.933110941 0.850576556 0.852091455 0.903101492 0.798462218 1 10.37925103 -6.990012025 4.41232795 0.874012964 1.001843077 0.341419776 0.075182294 0.220121205 10.63955437 0.025154961 0.027447671 1.02E-07 6.990012025 0.127830113 SGS(ph)GGGSAKEPQEER ddPTM_K562_Paclitaxel_30min_R1 2 SGSGGGSAKEPQEER 15 1 F5GWT4;Q9H4A3-2;Q9H4A3;Q9H4A3-5;Q9H4A3-6;Q9H4A3-7;F6UYG0 F5GWT4 WNK1 Serine/threonine-protein kinase WNK1 1 S(0.007)GS(0.993)GGGSAKEPQEER;S(0.003)GS(0.997)GGGSAKEPQEER 145.94 1.60E-05 3143000 1232.46 940.93 1833.88 1235.79 737.11 889.94 839.45 1147.17 1024.4 1603.43 TRUE FALSE 1249.718242 1043.663919 1370.894313 1156.531961 837.5168614 1047.758364 998.7312553 1049.710748 1122.798197 1276.650086 0.978904287 0.817501938 1.073821502 0.905911474 0.656026949 0.820709116 0.782306183 0.822238419 0.879487817 1 10.31814744 -6.535754243 24.91380019 0.812249878 0.950659868 0.253200433 0.099469682 266.3616483 515401.0525 0.028202919 0.036431959 2.91E-07 6.535754243 0.13840999 SGS(ph)MDPSGAHPSVR ddPTM_K562_Paclitaxel_30min_R1 6 SGSMDPSGAHPSVR 14 0 Q07666-3;Q07666;Q07666-2 Q07666-3 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 1 S(0.237)GS(0.76)MDPS(0.003)GAHPSVR;S(0.108)GS(0.892)MDPSGAHPSVR;S(0.415)GS(0.585)MDPSGAHPSVR;S(0.145)GS(0.855)MDPSGAHPSVR;S(0.005)GS(0.995)MDPSGAHPSVR;S(0.076)GS(0.924)MDPSGAHPSVR 190.03 1.03E-06 881138800 15327.9 13387.1 20056.5 16550.6 13398.3 12567 11920.3 14975.4 18103.5 16308 TRUE FALSE 15542.53789 14848.74885 14992.98852 15489.11859 15223.3753 14795.581 14182.1147 13703.1463 19842.42206 12984.42065 1.197014354 1.143581932 1.154690604 1.192900247 1.172433927 1.13948719 1.092240854 1.055352924 1.528171537 1 13.66449402 SGS(ph)PAPETTNESVPFAQHSSLDSR ddPTM_K562_Paclitaxel_30min_R1 3 SGSPAPETTNESVPFAQHSSLDSR 24 0 O15047 O15047 SETD1A Histone-lysine N-methyltransferase SETD1A 1 S(0.176)GS(0.788)PAPET(0.026)T(0.01)NESVPFAQHSSLDSR;S(0.061)GS(0.937)PAPET(0.001)TNESVPFAQHSSLDSR;S(0.167)GS(0.833)PAPETTNESVPFAQHSSLDSR 194.11 6.23E-33 407556000 4959.2 4685.6 8045.5 5489.1 4788.1 4843.9 4356.2 5580 4201.6 6257.3 TRUE FALSE 5028.6441 5197.189654 6014.31402 5137.053694 5440.320283 5702.897653 5182.766209 5105.944171 4605.182453 4982.058825 1.009350607 1.04318111 1.207194501 1.031110606 1.091982346 1.144686936 1.040286033 1.024866295 0.924353287 1 12.28252634 -8.327885418 2.203999103 0.966214013 1.08804758 0.40160419 0.058134573 0.325009841 2.959073118 0.042421674 0.016652541 4.70E-09 8.327885418 0.121833566 SGS(ph)S(ph)VS(ph)S(ph)RSYSPERSKSYSFHQSQ ddPTM_K562_Paclitaxel_30min_R1 2 SGSSVSSRSYSPERSKSYSFHQSQ 24 3 F8VWU8 F8VWU8 PPHLN1 4 S(0.064)GS(0.883)S(0.785)VS(0.451)S(0.451)RS(0.451)Y(0.422)S(0.451)PERS(0.008)KS(0.007)Y(0.007)S(0.007)FHQS(0.013)Q;S(0.087)GS(0.861)S(0.626)VS(0.626)S(0.449)RS(0.424)Y(0.398)S(0.375)PERS(0.027)KS(0.037)Y(0.035)S(0.037)FHQS(0.019)Q 45.88 0.030307 36775000 0 0 0 49.177 0 0 0 0 0 0 TRUE FALSE 0 0 0 46.02300733 0 0 0 0 0 0 0 SGS(ph)SQELDVKPSASPQER ddPTM_K562_Paclitaxel_30min_R1 1 SGSSQELDVKPSASPQER 18 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.316)GS(0.369)S(0.316)QELDVKPSASPQER 64.069 0.02614 37688000 901.71 737.49 1661.1 1342.1 916.77 752.51 799.7 848.44 861.78 1490.8 TRUE FALSE 914.336722 818.0116522 1241.734761 1256.023713 1041.649595 885.9570827 951.4389003 776.3597262 944.5578195 1186.974142 0.77030888 0.689157096 1.046134635 1.058172768 0.877567218 0.746399649 0.801566662 0.65406625 0.7957695 1 10.21307279 -7.183086514 6.077278401 0.778284763 0.896536593 0.090150603 0.131938289 0.490203564 30.3253778 0.046523024 0.046464086 6.56E-08 7.183086514 0.11825183 SGS(ph)YSYLEER ddPTM_K562_Paclitaxel_30min_R1 3 SGSYSYLEER 10 0 O14974-5;O14974-4;O14974-3;O14974-2;O14974;A0A0U1RQZ1;H0YIM2;H0YIS3 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 S(0.01)GS(0.99)YS(0.001)YLEER;S(0.009)GS(0.986)YS(0.005)YLEER;S(0.005)GS(0.994)YSYLEER 164.48 0.000216 120842000 4279.39 4218.7 6235 5235.2 4012.63 5373.7 4771.9 5807.3 4672.8 7447.6 TRUE FALSE 4339.314663 4679.311933 4660.897136 4899.437704 4559.21814 6326.650245 5677.343114 5313.933617 5121.643319 5929.775032 0.731784029 0.789121325 0.786015846 0.826243437 0.768868653 1.066929219 0.957429765 0.896144219 0.863716295 1 12.53376166 -7.236697667 24.89040864 0.950389535 0.783748896 0.712421135 0.055954117 447.6142456 450304.7252 0.019345986 0.019337427 5.80E-08 7.236697667 -0.166640638 SGSGSVGNGSSRYS(ph)PSQNS(ph)PIHHIPSRR ddPTM_K562_Paclitaxel_30min_R1 1 SGSGSVGNGSSRYSPSQNSPIHHIPSRR 28 2 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7;H0YF00 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 2 S(0.007)GS(0.017)GS(0.017)VGNGS(0.079)S(0.079)RY(0.186)S(0.613)PS(0.256)QNS(0.718)PIHHIPS(0.029)RR 46.878 0.016002 19785000 953.33 944.81 1595.6 1135.1 799.96 1089.1 1073.4 1227.3 909.11 1259.6 TRUE FALSE 966.6795613 1047.967551 1192.771046 1062.299767 908.9280954 1282.236593 1277.072046 1123.033204 996.4340775 1002.892829 0.963891189 1.044944705 1.189330517 1.05923558 0.906306307 1.278538002 1.273388352 1.119793833 0.993559879 1 9.969951729 -7.264093659 24.99693826 1.149313891 1.043590876 0.155550444 0.112340762 463.9258114 4369054.547 0.040742678 0.037559876 5.44E-08 7.264093659 -0.105723015 SGSGSVGNGSSRYS(ph)PSQNSPIHHIPSR ddPTM_K562_Paclitaxel_30min_R1 1 SGSGSVGNGSSRYSPSQNSPIHHIPSR 27 1 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7;H0YF00 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 S(0.008)GS(0.008)GS(0.025)VGNGS(0.07)S(0.07)RY(0.253)S(0.284)PS(0.226)QNS(0.057)PIHHIPSR 49.765 0.012507 18051000 249.38 210.85 241.33 123.89 335.91 188.05 201.94 326.21 122.56 347.67 TRUE FALSE 252.8720894 233.871316 180.4032568 115.9442499 381.666629 221.3980271 240.2570608 298.4964244 134.3324356 276.8146632 0.913506844 0.844866068 0.651711346 0.418851547 1.378780389 0.799805995 0.867934733 1.078325913 0.485279335 1 8.112776556 -6.729785149 24.99995362 0.928823453 0.71309932 0.172684147 0.243893303 387.6809165 306181.945 0.071398467 0.092166633 1.86E-07 6.729785149 -0.215724132 SGSIVELIAGGGSSCS(ph)PVLSR ddPTM_K562_Paclitaxel_30min_R1 2 SGSIVELIAGGGSSCSPVLSR 21 0 P42858 P42858 HTT Huntingtin 1 SGSIVELIAGGGSS(0.001)CS(0.998)PVLSR;SGSIVELIAGGGS(0.018)S(0.05)CS(0.931)PVLS(0.001)R 222.92 2.41E-44 104185000 5741.9 5253.1 6942.5 5625.3 4933 4925.3 4276.9 5354.4 4806.9 5628.1 TRUE FALSE 5822.304315 5826.651223 5189.780011 5264.518436 5604.958116 5798.7328 5088.419448 4899.510299 5268.624223 4481.090131 1.299305335 1.300275391 1.158151222 1.174829848 1.250802361 1.294045117 1.135531601 1.093374638 1.175746095 1 12.12963403 -15 0.061881921 0.176184907 1.540241148 0.646055089 0.055951948 261.3386419 1.175819391 31.66148527 4.985361091 1.00E-15 15 1.364056241 SGSIVELIAGGGSSCS(ph)PVLSRK ddPTM_K562_Paclitaxel_30min_R1 1 SGSIVELIAGGGSSCSPVLSRK 22 1 P42858 P42858 HTT Huntingtin 1 SGSIVELIAGGGS(0.078)S(0.255)CS(0.659)PVLS(0.008)RK 51.46 0.026839 6903400 1466.2 1574 2847 2064.2 1554.8 1331.8 1126.7 1727.2 1770.3 1765.9 TRUE FALSE 1486.731324 1745.854643 2128.239639 1931.811451 1766.590083 1567.976031 1340.485443 1580.463579 1940.345225 1406.008611 1.057412673 1.24170978 1.513674683 1.373968435 1.256457514 1.115196606 0.953397748 1.124078165 1.380037939 1 10.45738971 -7.173126629 3.886231346 1.111909871 1.308349176 0.253472552 0.149670251 0.347181102 9.731836764 0.054507298 0.054077966 6.71E-08 7.173126629 0.196439305 SGSMDPSGAHPS(ph)VRQTPSR ddPTM_K562_Paclitaxel_30min_R1 1 SGSMDPSGAHPSVRQTPSR 19 1 Q07666-3;Q07666;Q07666-2 Q07666-3 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 1 SGSMDPSGAHPS(0.452)VRQT(0.452)PS(0.096)R 56.215 0.02918 5356600 3010.1 2152.4 2295.2 2138.1 1454.9 1867.6 2342.5 2325.3 2866.8 3894.9 TRUE FALSE 3052.250687 2387.406311 1715.748373 2000.971836 1653.082012 2198.792638 2786.977146 2127.751251 3142.168949 3101.117242 0.984242274 0.769853612 0.553267819 0.64524224 0.533060147 0.709032412 0.898700993 0.686124092 1.013237715 1 11.59857235 -8.764089856 24.96772945 1.006619044 0.714924254 0.424812672 0.13203714 69.19340197 651743.9 0.116813582 0.035495861 1.72E-09 8.764089856 -0.291694791 SGSMDPSGAHPS(ph)VRQTPSRQPPLPHR ddPTM_K562_Paclitaxel_30min_R1 1 SGSMDPSGAHPSVRQTPSRQPPLPHR 26 2 Q07666-3;Q07666 Q07666-3 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 1 S(0.003)GS(0.003)MDPS(0.015)GAHPS(0.476)VRQT(0.422)PS(0.081)RQPPLPHR 43.233 0.022884 40423000 2480.6 2201.1 1960.9 1831.9 1483 2021.9 2042.4 2091.5 3212.6 3461.7 TRUE FALSE 2515.336053 2441.423542 1465.846543 1714.410133 1685.009707 2380.455576 2429.934738 1913.81402 3521.184584 2756.20364 0.91260893 0.885792148 0.531835356 0.622018674 0.611351673 0.863671879 0.881623804 0.694365972 1.277548775 1 11.42846677 -8.753663786 24.99940096 1.138774421 0.746869929 0.546670834 0.141434252 120.9022012 388723.0688 0.105519226 0.03823536 1.76E-09 8.753663786 -0.391904493 SGSMDPSGAHPSVRQT(ph)PSRQPPLPHR ddPTM_K562_Paclitaxel_30min_R1 1 SGSMDPSGAHPSVRQTPSRQPPLPHR 26 2 Q07666-3;Q07666 Q07666-3 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 1 SGSMDPS(0.001)GAHPS(0.103)VRQT(0.448)PS(0.448)RQPPLPHR 44.258 0.019249 6477400 1680.1 1329.7 1199.5 1099.9 809.31 1039.5 1071.6 1572.9 1974.4 1863.7 TRUE FALSE 1703.626584 1474.881143 896.6713898 1029.357337 919.5517237 1223.84073 1274.930506 1439.272327 2164.049942 1483.876917 1.148091573 0.993937655 0.604276123 0.693694555 0.619695416 0.824758924 0.859188853 0.969940506 1.458375636 1 10.53515571 -8.548826959 5.046721562 1.233121788 0.812145115 0.427827574 0.186822725 0.174351898 11.86362868 0.135466031 0.050769864 2.83E-09 8.548826959 -0.420976673 SGSPMVPSYETSVS(ph)PQANR ddPTM_K562_Paclitaxel_30min_R1 2 SGSPMVPSYETSVSPQANR 19 0 E9PDH4;Q9Y2I7-2;Q9Y2I7-3;Q9Y2I7-4;Q9Y2I7 E9PDH4 PIKFYVE 1-phosphatidylinositol 3-phosphate 5-kinase 1 SGSPMVPSYETSVS(1)PQANR;SGSPMVPSYETSVS(1)PQANR 281.65 1.25E-139 34740000 3866.9 3482 4161.4 3751.4 3138.5 3129.4 3396.6 4575.3 3427 3650.9 TRUE FALSE 3921.04853 3862.176535 3110.803102 3510.801995 3566.016835 3684.355151 4041.087119 4186.599707 3756.178662 2906.844576 1.348902023 1.328649136 1.070164923 1.207770799 1.226765567 1.267475799 1.390197175 1.440255782 1.29218421 1 11.50523822 -7.529880303 23.78192835 1.318988607 1.232379166 0 0.131165782 257.4656441 874503.916 0.04934666 0.038334073 2.95E-08 7.529880303 -0.086609441 SGSS(ph)PGLRDGSGTPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SGSSPGLRDGSGTPSR 16 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.002)GS(0.096)S(0.903)PGLRDGSGT(0.005)PS(0.995)R 147.6 5.94E-22 0 3209.7 3167.6 4226.5 4322.1 2915.3 3400.5 2998.7 3737 3448.1 4037 TRUE FALSE 3254.645703 3513.44928 3159.467802 4044.899851 3312.413216 4003.53093 3567.687671 3419.518524 3779.305412 3214.257184 1.012565428 1.093082812 0.982954263 1.258424457 1.030537703 1.245554012 1.109957127 1.06385965 1.175794342 1 11.65026965 -6.221629874 24.99831887 1.129262222 1.035889043 0.217496495 0.083722503 805.181856 505612.1061 0.021118974 0.036578584 6.00E-07 6.221629874 -0.093373179 SGSS(ph)PGLRDGSGTPSR ddPTM_K562_Paclitaxel_30min_R1 1 SGSSPGLRDGSGTPSR 16 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.014)GS(0.046)S(0.661)PGLRDGS(0.027)GT(0.002)PS(0.251)R 94.454 0.020656 4955000 1294.1 1276.2 1905 1716.1 1499.1 1197.6 1029.1 1431.7 1533.8 1666.8 TRUE FALSE 1312.221393 1415.539832 1424.059189 1606.037027 1703.3028 1409.977545 1224.366353 1310.068149 1681.128343 1327.105245 0.988784723 1.066637207 1.073056711 1.210180604 1.283472284 1.062445914 0.922584216 0.987162211 1.266763393 1 10.37406707 -7.507134317 24.91665968 1.035837266 1.128109365 0.103230741 0.112650345 1547.971112 2449780.662 0.042865561 0.036666232 3.11E-08 7.507134317 0.092272098 SGSSHAPQDVSLSYPQHHVGNS(ph)SPT(ph)STSPSSR ddPTM_K562_Paclitaxel_30min_R1 1 SGSSHAPQDVSLSYPQHHVGNSSPTSTSPSSR 32 0 J3KPD3;I3L521;F5GXV8 J3KPD3 RBM7 2 SGSSHAPQDVSLSYPQHHVGNS(0.469)S(0.469)PT(0.248)S(0.248)T(0.248)S(0.248)PS(0.064)S(0.006)R 88.186 2.54E-08 11764000 1293 1416.9 1505.3 1018.9 1182.9 813.81 1331.9 1230.1 754.2 1121.3 TRUE FALSE 1311.105989 1571.601934 1125.268398 953.5523144 1344.031007 958.127777 1584.621072 1125.595327 826.6442799 892.7784445 1.468568151 1.760349327 1.260411701 1.068072734 1.505447421 1.073197704 1.774932047 1.260777894 0.925923206 1 9.802158385 -2.000000423 0.053182213 0.352141547 3.195383584 0.260599034 0.250020911 656.3734515 2.632682145 31.61647429 150.0098483 0.00999999 2.000000423 2.843242037 SGSSHAPQDVSLSYPQHHVGNS(ph)SPTSTSPSR ddPTM_K562_Paclitaxel_30min_R1 1 SGSSHAPQDVSLSYPQHHVGNSSPTSTSPSR 31 0 Q9Y580;F5GY08 Q9Y580 RBM7 RNA-binding protein 7 1 SGSSHAPQDVSLSYPQHHVGNS(0.361)S(0.361)PT(0.076)S(0.076)T(0.076)S(0.026)PS(0.022)R 115.06 5.23E-17 21825000 2208.1 2528.8 3311.4 2602.3 2739.8 2786.1 2887.7 2919.3 1692.2 3568 TRUE FALSE 2239.020213 2804.902936 2475.396115 2435.400125 3113.007145 3280.175716 3435.626 2671.287243 1854.743371 2840.839641 0.788154382 0.98734997 0.871360734 0.857281801 1.095805303 1.154650079 1.209369917 0.940316097 0.652885627 1 11.47210168 -5.260432362 22.08664436 0.982370092 0.788154096 0.116266254 0.152548742 40.04335026 877525.0008 0.040988794 0.241181512 5.49E-06 5.260432362 -0.194215996 SGSSHAPQDVSLSYPQHHVGNSSPT(ph)STSPSSR ddPTM_K562_Paclitaxel_30min_R1 1 SGSSHAPQDVSLSYPQHHVGNSSPTSTSPSSR 32 0 J3KPD3;I3L521;F5GXV8 J3KPD3 RBM7 1 SGSSHAPQDVS(0.001)LS(0.001)Y(0.001)PQHHVGNS(0.137)S(0.137)PT(0.186)S(0.186)T(0.099)S(0.077)PS(0.077)S(0.099)R 57.951 0.0014411 63965000 2595.9 2389.9 3373.5 2686.3 2397.6 2785.9 2311.2 3058.6 2266.7 3236.4 TRUE FALSE 2632.250609 2650.837364 2521.818202 2514.012741 2724.193712 3279.940249 2749.738135 2798.752839 2484.426663 2576.819904 1.021511284 1.028724344 0.978655202 0.975626096 1.057192126 1.272863596 1.067105284 1.086126677 0.964144471 1 11.33137599 -6.989213438 17.70517927 1.091888787 1.003357744 0.169266401 0.077790578 10.61347816 17414.96894 0.024927008 0.028154057 1.03E-07 6.989213438 -0.088531043 SGSSHAPQDVSLSYPQHHVGNSSPTST(ph)SPSSR ddPTM_K562_Paclitaxel_30min_R1 1 SGSSHAPQDVSLSYPQHHVGNSSPTSTSPSSR 32 0 J3KPD3;I3L521;F5GXV8 J3KPD3 RBM7 1 SGSSHAPQDVS(0.021)LS(0.021)Y(0.017)PQHHVGNS(0.125)S(0.125)PT(0.158)S(0.158)T(0.201)S(0.089)PS(0.04)S(0.047)R 44.912 0.030883 74566000 2174.5 2334.2 2591.5 2322.7 2204.7 2412 2190.3 2622.7 1902.3 2974.7 TRUE FALSE 2204.949709 2589.05585 1937.243774 2173.732418 2505.017466 2839.734334 2605.897991 2399.885265 2085.024415 2368.454507 0.930965616 1.093141473 0.817935818 0.917785168 1.057659101 1.198982005 1.100252499 1.013270577 0.880331207 1 11.20973025 -6.767767462 24.9203946 1.05319958 0.942182962 0.199179894 0.098357149 237.6963455 936062.0893 0.032265058 0.03747722 1.71E-07 6.767767462 -0.111016618 SGSSHAPQDVSLSYPQHHVGNSSPTSTSPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SGSSHAPQDVSLSYPQHHVGNSSPTSTSPSR 31 0 Q9Y580;F5GY08 Q9Y580 RBM7 RNA-binding protein 7 1 SGSSHAPQDVSLS(0.004)Y(0.004)PQHHVGNS(0.152)S(0.152)PT(0.073)S(0.093)T(0.093)S(0.093)PS(0.337)R 43.566 0.022067 24492000 1963.1 1956.4 2843 2089.7 2075.9 2196.8 1771.9 2508.5 1745.3 2864.7 TRUE FALSE 1990.589457 2170.006368 2125.249488 1955.675995 2358.672725 2586.371635 2108.108775 2295.387267 1912.943863 2280.872568 0.872731552 0.951393076 0.931770375 0.857424489 1.034109822 1.13393956 0.924255395 1.006363661 0.838689496 1 11.15537013 -6.765997416 24.99776345 0.99383162 0.908794423 0.237239091 0.075259256 182.3220348 999912.7303 0.023798145 0.027898272 1.71E-07 6.765997416 -0.085037197 SGSSS(ph)PDSEITELKFPSINHD ddPTM_K562_Paclitaxel_30min_R1 3 SGSSSPDSEITELKFPSINHD 21 1 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 1 S(0.035)GS(0.035)S(0.161)S(0.759)PDS(0.01)EITELKFPSINHD;S(0.03)GS(0.03)S(0.117)S(0.472)PDS(0.35)EIT(0.001)ELKFPSINHD;S(0.033)GS(0.026)S(0.138)S(0.762)PDS(0.041)EITELKFPSINHD 166.98 2.52E-18 1080428000 5191.58 4195.64 9396.9 5215.2 3922.54 3881.86 2842.3 4916.4 4792.35 7047.7 TRUE FALSE 5264.278137 4653.734164 7024.536376 4880.720414 4456.856357 4570.253367 3381.611587 4498.721133 5252.67663 5611.374871 0.938144084 0.829339381 1.251838727 0.869790475 0.794253897 0.814462315 0.602635123 0.801714595 0.936076586 1 12.45413858 -6.510031413 24.27065745 0.805921964 1.000744599 0.249259957 0.138746411 538.7551078 1017794.678 0.039942487 0.056138716 3.09E-07 6.510031413 0.194822635 SGSSSPDS(ph)EITELKFPSINHD ddPTM_K562_Paclitaxel_30min_R1 1 SGSSSPDSEITELKFPSINHD 21 1 B4E1E0;P17812-2;P17812 B4E1E0 CTPS1 CTP synthase;CTP synthase 1 1 S(0.004)GS(0.004)S(0.016)S(0.06)PDS(0.914)EITELKFPSINHD 129.89 1.32E-08 102450000 1970.6 1363.4 3119.8 2072.3 1288.7 1429 1255 1835.6 1706.3 2465.2 TRUE FALSE 1998.19448 1512.260623 2332.167905 1939.391953 1464.242758 1682.413086 1493.129698 1679.654323 1870.197739 1962.790887 1.018037374 0.770464461 1.188189695 0.988078744 0.746000385 0.857153504 0.760717664 0.855747973 0.95282577 1 10.93869076 -4.92814006 17.45196222 0.898291698 3.167891507 0.066678789 0.129376384 22195697.35 77877497.43 0.033556433 1889798298 1.18E-05 4.92814006 2.269599809 SGSYS(ph)GRSPSPY(ph)GR ddPTM_K562_Paclitaxel_30min_R1 1 SGSYSGRSPSPYGR 14 1 J3QSD7;Q9NYV4-3;Q9NYV4-2;Q9NYV4 J3QSD7 CDK12 Cyclin-dependent kinase 12 2 SGSYS(0.592)GRS(0.407)PS(0.221)PY(0.779)GR 119.62 0.017085 30201000 4706.9 3784.4 6737.6 5433.6 4386.6 4291.9 4313.9 4799.5 4340.9 4913.2 TRUE FALSE 4772.811122 4197.59359 5036.60955 5085.113216 4984.129186 5053.008204 5132.440005 4391.752517 4757.862841 3911.887143 1.220078941 1.073035452 1.287514022 1.299913068 1.274098409 1.291706028 1.312011266 1.122668512 1.216257695 1 11.93364903 -8.279865848 23.91550128 1.127097284 1.250051481 0.37306998 0.081484929 621.9815771 807255.7242 0.046374534 0.022356838 5.25E-09 8.279865848 0.122954197 SGSYS(ph)YLEER ddPTM_K562_Paclitaxel_30min_R1 1 SGSYSYLEER 10 0 O14974-5;O14974-4;O14974-3;O14974-2;O14974;A0A0U1RQZ1;H0YIM2;H0YIS3 O14974-5 PPP1R12A Protein phosphatase 1 regulatory subunit 12A 1 S(0.11)GS(0.216)YS(0.674)YLEER 144.7 0.00056119 22453000 1181.2 1122.6 1472.5 1142.4 1060.3 1083.2 1303.4 1318.2 1047.2 1833.5 TRUE FALSE 1197.740444 1245.169264 1100.749163 1069.131577 1204.730811 1275.290311 1550.713346 1206.210682 1147.788239 1459.831694 0.820464749 0.852953988 0.754024706 0.732366328 0.825253224 0.87358722 1.062254884 0.826266951 0.786246965 1 10.51158633 -7.257210436 3.446804326 0.910454726 0.791859165 0.339215553 0.080128887 0.313428434 7.97881728 0.030169938 0.028218739 5.53E-08 7.257210436 -0.118595561 SGT(ph)PPRQGSITS(ph)PQANEQSVT(ph)PQRR ddPTM_K562_Paclitaxel_30min_R1 1 SGTPPRQGSITSPQANEQSVTPQRR 25 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 S(0.176)GT(0.709)PPRQGS(0.394)IT(0.184)S(0.537)PQANEQS(0.183)VT(0.817)PQRR 68.42 0.0022192 152770000 2218.4 1984.5 3056.1 2082.4 1973.1 1703.4 1861.4 1932.7 1802.3 2461.5 TRUE FALSE 2249.464444 2201.174421 2284.549758 1948.844184 2241.869625 2005.474073 2214.590933 1768.505071 1975.418968 1959.844949 1.147776739 1.123137023 1.165678825 0.994386921 1.143901525 1.023282007 1.129982723 0.90236989 1.007946557 1 10.93652381 -7.526001682 0.577074164 0.969554633 1.138901443 0.424662048 0.064119149 0.804003129 0.566106313 0.055071178 0.050658715 2.98E-08 7.526001682 0.16934681 SGT(ph)PTQDEMMDKPTSSSVDTMSLLSK ddPTM_K562_Paclitaxel_30min_R1 1 SGTPTQDEMMDKPTSSSVDTMSLLSK 26 1 Q5VT52-2;Q5VT52-3;Q5VT52;Q5VT52-5 Q5VT52-2 RPRD2 Regulation of nuclear pre-mRNA domain-containing protein 2 1 S(0.041)GT(0.894)PT(0.049)QDEMMDKPT(0.003)S(0.003)S(0.004)S(0.005)VDT(0.001)MSLLSK 75.758 0.0011774 8699300 631.11 644.68 1712.2 1032 540.33 377.74 418.46 1038.2 777.45 1275.9 TRUE FALSE 639.9474871 715.0683426 1279.933934 965.8121391 613.9320939 444.7268853 497.8606005 949.9984298 852.1275462 1015.87088 0.629949632 0.70389688 1.259937616 0.950723324 0.604340676 0.437778948 0.490082559 0.935156671 0.838814817 1 9.988501327 -6.75581321 24.9955043 0.689076955 0.899811225 0.104824994 0.230883156 285.4854625 1268324.322 0.074337069 0.093278496 1.75E-07 6.75581321 0.21073427 SGTAETEPVEQDS(ph)SQPSLPLVR ddPTM_K562_Paclitaxel_30min_R1 1 SGTAETEPVEQDSSQPSLPLVR 22 0 A6NNK5;Q12888;Q12888-3;Q12888-2;C9JXV0;H7C3N7 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 SGTAETEPVEQDS(0.5)S(0.5)QPSLPLVR 179.92 8.84E-23 11163000 2397.9 2654.6 3068.7 2402 1987.4 2213 2134.3 2787.4 2302.2 3083.7 TRUE FALSE 2431.477998 2944.438205 2293.968732 2247.946471 2258.117527 2605.444478 2539.272283 2550.592972 2523.336597 2455.240247 0.990321823 1.199246472 0.934315383 0.915570879 0.91971347 1.061176999 1.034225586 1.038836413 1.027735106 1 11.26164849 -10.70424684 16.27543433 1.000009514 1.013720929 0.002562057 0.079525483 0 0 0.081214779 0.019697477 1.98E-11 10.70424684 0.013711415 SGTAETEPVEQDSS(ph)QPSLPLVR ddPTM_K562_Paclitaxel_30min_R1 1 SGTAETEPVEQDSSQPSLPLVR 22 0 A6NNK5;Q12888;Q12888-3;Q12888-2;C9JXV0;H7C3N7 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 SGTAETEPVEQDS(0.245)S(0.755)QPSLPLVR 179.66 9.12E-23 9482200 1972.4 1645 1916.3 1811.2 1517.6 1742.4 1930.3 2019.9 1943.7 2523 TRUE FALSE 2000.019685 1824.606663 1432.506365 1695.037739 1724.322813 2051.390175 2296.564348 1848.296887 2130.40107 2008.811215 0.995623516 0.908301711 0.713111493 0.843801411 0.858379722 1.021196099 1.143245483 0.920094867 1.060528264 1 10.97212627 -7.269410398 6.120497948 1.031822224 0.856410564 0.494269327 0.083390876 0.138214934 23.86923247 0.03007307 0.027838583 5.38E-08 7.269410398 -0.17541166 SGTNHYSTSSCT(ph)PPANGTDSIMANR ddPTM_K562_Paclitaxel_30min_R1 2 SGTNHYSTSSCTPPANGTDSIMANR 25 0 A0A1B0GVB8;P15884-12;P15884-15;P15884-5;P15884-4;P15884-10;P15884-13;P15884-14;P15884;P15884-3;A0A1B0GVR6;H3BTP3;H3BPJ7;E9PH57;A0A1B0GW91;P15884-8;A0A1B0GWD5;P15884-11;P15884-16;P15884-6;P15884-2;P15884-9;P15884-7;A0A0D9SG78;A0A0D9SEZ3;K7ESI6;A0A0D9SEK1;A0A0D9SFU5 A0A1B0GVB8 TCF4 Transcription factor 4 1 SGTNHYST(0.001)S(0.064)S(0.065)CT(0.869)PPANGTDSIMANR;SGTNHYSTSS(0.023)CT(0.976)PPANGTDSIMANR 126.3 2.53E-10 44780000 2616.5 2359.39 2947.4 2399.4 2292.01 2560.6 2282.62 2616.8 2075.01 2553.5 TRUE FALSE 2653.139073 2616.996179 2203.292417 2245.513223 2604.220566 3014.686457 2715.735229 2394.486506 2274.323982 2033.095298 1.304975263 1.287197989 1.083713301 1.104480063 1.280914165 1.482806271 1.335763863 1.17775419 1.118650948 1 10.98946213 -8.848582574 2.044509793 1.008557864 1.263027667 0.38584536 0.108089412 0.362776492 3.114953936 0.116984207 0.033301321 1.42E-09 8.848582574 0.254469804 SGTNS(ph)PPPPFSDWGR ddPTM_K562_Paclitaxel_30min_R1 1 SGTNSPPPPFSDWGR 15 0 D6RAU6;D6REP2;D6RAJ6;Q9UKT5-2;Q9UKT5 D6RAU6 FBXO4 F-box only protein 4 1 S(0.003)GTNS(0.996)PPPPFSDWGR 136.63 8.58E-06 41356000 1164.2 1047.4 1580.5 1328.6 965.12 1256.2 1235 1207.8 1170.6 1669.2 TRUE FALSE 1180.502392 1161.758674 1181.483228 1243.389543 1096.585684 1478.969432 1469.334803 1105.189851 1283.04136 1329.016124 0.888252874 0.87414942 0.888990891 0.93557145 0.825110895 1.112830315 1.10558087 0.831584983 0.965406918 1 10.37614289 -7.243598312 24.98253429 0.998960957 0.885274356 0.37767905 0.0773121 1031.619883 1444560.248 0.027372781 0.027316885 5.71E-08 7.243598312 -0.113686601 SGTPPRQGS(ph)ITSPQANEQSVTPQR ddPTM_K562_Paclitaxel_30min_R1 1 SGTPPRQGSITSPQANEQSVTPQR 24 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.041)GT(0.018)PPRQGS(0.835)IT(0.053)S(0.053)PQANEQSVTPQR 49.433 0.027139 15510000 1253.8 1230.6 2320.4 1439.5 1244.4 1342.6 984.68 1330.6 1748.7 1538 TRUE FALSE 1271.357068 1364.96107 1734.586322 1347.176913 1413.908348 1580.691259 1171.51789 1217.557225 1916.670448 1224.554756 1.038219861 1.114659074 1.416503683 1.100136116 1.154630564 1.290829382 0.956688857 0.994285653 1.565197832 1 10.25804157 SGVGTGPPS(ph)PIALPPLR ddPTM_K562_Paclitaxel_30min_R1 2 SGVGTGPPSPIALPPLR 17 0 Q92630 Q92630 DYRK2 Dual specificity tyrosine-phosphorylation-regulated kinase 2 1 S(0.009)GVGT(0.019)GPPS(0.972)PIALPPLR;SGVGTGPPS(1)PIALPPLR 147.53 3.75E-22 0 2055.4 1843.15 2354.05 2055.96 1761.15 1869.97 1864.7 1868.55 1923.8 2344.59 TRUE FALSE 2084.181941 2044.39135 1759.740963 1924.099928 2001.048447 2201.582924 2218.517091 1709.805014 2108.589586 1866.761271 1.116469456 1.095154148 0.942670598 1.030715581 1.071935913 1.179359652 1.188431068 0.915920552 1.129544317 1 10.86632173 -5.536569955 24.99656739 1.05999736 1.111140745 0.049641125 0.086447139 724.6279972 1322979.943 0.022923332 0.060709747 2.91E-06 5.536569955 0.051143385 SGVS(ph)ITIDDPVR ddPTM_K562_Paclitaxel_30min_R1 1 SGVSITIDDPVR 12 0 S4R3H4;E7EQT4;Q9UKV3-5;Q9UKV3;G3V3B0;Q9UKV3-3;Q9UKV3-2 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 S(0.013)GVS(0.986)IT(0.001)IDDPVR 117.2 9.35E-09 0 916.59 1044.5 954.41 816.43 817.74 716.08 827.32 1011.9 948.13 1142.7 TRUE FALSE 929.4250879 1158.542042 713.4573915 764.067834 929.1300325 843.0667337 984.2996511 925.9327789 1039.202123 909.8171128 1.021551557 1.273379041 0.784176711 0.839803762 1.021227255 0.92663319 1.081865396 1.017713083 1.14220991 1 9.82943276 -7.775391843 24.65776269 1.061923205 0.978131874 0.09136852 0.127652433 577.777501 1021077.399 0.056432746 0.038268199 1.68E-08 7.775391843 -0.083791331 SGVSS(ph)DNEDDDDEEDGNYLHPSLFASK ddPTM_K562_Paclitaxel_30min_R1 1 SGVSSDNEDDDDEEDGNYLHPSLFASK 27 0 Q12872;Q12872-2 Q12872 SFSWAP "Splicing factor, suppressor of white-apricot homolog" 1 S(0.04)GVS(0.156)S(0.804)DNEDDDDEEDGNYLHPSLFASK 161.95 4.50E-35 28795000 1604.4 1467.4 2407.9 1928.8 1613.4 1667 1555.7 2175.9 1532.7 2318.3 TRUE FALSE 1626.86655 1627.615694 1799.995864 1805.095401 1833.172395 1962.619044 1850.885954 1991.043713 1679.922683 1845.829187 0.881374377 0.881780235 0.97516925 0.977931985 0.993143032 1.063272299 1.002739563 1.078671703 0.910118171 1 10.85005334 -5.869698083 1.296508148 1.013195103 0.862049452 0.53929021 0.043945074 0.411715552 1.16199253 0.013441267 0.062585099 1.35E-06 5.869698083 -0.151145651 SGYHDDS(ph)DEDLLE ddPTM_K562_Paclitaxel_30min_R1 1 SGYHDDSDEDLLE 13 0 Q99523-2;Q99523 Q99523-2 SORT1 Sortilin 1 S(0.099)GYHDDS(0.901)DEDLLE 94.402 0.012659 504770000 5500.4 5968.9 7812.3 6588.7 5424 5202.4 5502 5831.4 5807.7 7013.3 TRUE FALSE 5577.42257 6620.604688 5839.988244 6166.130272 6162.840629 6124.972595 6545.975778 5335.986172 6365.555534 5583.98561 0.998824667 1.185641431 1.045845862 1.104252536 1.103663415 1.096881873 1.17227662 0.955587379 1.139966321 1 12.44707951 -9.678035967 0.614398719 0.997891521 1.096508886 0.118693514 0.069201317 4.73197956 2.698925233 0.101315133 0.026757624 2.10E-10 9.678035967 0.098617365 SGYIS(ph)ESENSEISQQVR ddPTM_K562_Paclitaxel_30min_R1 3 SGYISESENSEISQQVR 17 0 A0A075B754;Q96QE3-2;Q96QE3 A0A075B754 ATAD5 ATPase family AAA domain-containing protein 5 1 SGYIS(0.996)ES(0.004)ENSEISQQVR;SGYIS(0.961)ES(0.038)ENS(0.001)EISQQVR;SGYIS(0.999)ES(0.001)ENSEISQQVR 171.98 9.50E-22 21263400 2474.63 2124.72 3269.56 2822.83 2304.21 1859.64 2329.53 2766.06 3037.24 3430.27 TRUE FALSE 2509.282455 2356.704115 2444.119141 2641.786318 2618.082413 2189.421043 2771.546157 2531.065938 3328.980473 2731.179091 0.918754271 0.862888898 0.89489523 0.967269531 0.95859053 0.801639501 1.014780087 0.926730124 1.21888033 1 11.4153082 -8.694816202 9.830681992 1.108937209 0.917616964 0.517493455 0.073873669 0.244849475 34.11190876 0.047860687 0.017984084 2.02E-09 8.694816202 -0.191320245 SGYSS(ph)PGSPGTPGSR ddPTM_K562_Paclitaxel_30min_R1 1 SGYSSPGSPGTPGSR 15 0 I3L170;A0A0G2JQJ7;A0A0G2JPD5;A0A0G2JS76;A0A0G2JMX7;P10636-3;P10636-2;P10636-4;P10636-6;P10636-5;P10636-7;P10636-8;P10636;P10636-9 I3L170 MAPT Microtubule-associated protein;Microtubule-associated protein tau 1 SGYS(0.025)S(0.889)PGS(0.086)PGTPGSR 182.72 1.06E-06 3692600 1743.9 1727.1 2368 2282.9 1903.8 1471.8 1704.7 2067.3 1773.2 2490 TRUE FALSE 1768.31998 1915.670619 1770.169113 2136.485012 2163.129792 1732.803065 2028.157926 1891.669961 1943.523783 1982.536633 0.891948199 0.966272495 0.89288091 1.077652224 1.091091965 0.874033315 1.023011576 0.95416646 0.980321751 1 10.95313181 -6.233058027 24.99118313 0.99763065 0.921957728 0.279733185 0.060797327 1091.404757 961035.0731 0.016946703 0.029344908 5.85E-07 6.233058027 -0.075672922 SGYSSPGS(ph)PGTPGSR ddPTM_K562_Paclitaxel_30min_R1 1 SGYSSPGSPGTPGSR 15 0 I3L170;A0A0G2JQJ7;A0A0G2JPD5;A0A0G2JS76;A0A0G2JMX7;P10636-3;P10636-2;P10636-4;P10636-6;P10636-5;P10636-7;P10636-8;P10636;P10636-9 I3L170 MAPT Microtubule-associated protein;Microtubule-associated protein tau 1 SGYS(0.014)S(0.322)PGS(0.664)PGTPGSR 171.81 1.81E-06 28065000 2592.4 2492 3707.2 3155 2706.2 2485.4 2337.2 2542.5 2498.2 3190.1 TRUE FALSE 2628.701598 2764.084987 2771.27151 2952.652421 3074.830256 2926.150793 2780.671499 2326.498755 2738.163272 2539.955869 1.034939871 1.088241344 1.091070732 1.162481781 1.210584126 1.152047888 1.09477158 0.915960306 1.078035767 1 11.31058772 -8.06859948 7.236389954 0.998254109 1.125777997 0.486295187 0.057659826 0.241855945 22.20600594 0.028628041 0.016533979 8.54E-09 8.06859948 0.127523888 SHASASLY(ph)LLMR ddPTM_K562_Paclitaxel_30min_R1 1 SHASASLYLLMR 12 0 Q96N67-4;Q96N67-3;Q96N67-5;Q96N67-2;Q96N67-6;Q96N67;A0A1B0GWE0 Q96N67-4 DOCK7 Dedicator of cytokinesis protein 7 1 SHASASLY(1)LLMR 76.143 0.016882 6363200 174.4 205.61 203.01 175.23 142.22 225.08 111.64 123.69 212.18 101.62 TRUE FALSE 176.8421381 228.0591951 151.7576147 163.9915321 161.5927718 264.9947777 132.8231072 113.1817625 232.560837 80.90978822 2.18567051 2.818684861 1.875639747 2.026844164 1.997196821 3.275188127 1.641619761 1.39886366 2.874322652 1 6.338242341 -11.75666285 0.351605742 2.34E-16 2.286257038 0.290776889 0.563775825 40.50972188 2.508622013 35.60867212 0.450260299 1.75E-12 11.75666285 2.286257038 SHDFYSHELSS(ph)PVDSPSSLR ddPTM_K562_Paclitaxel_30min_R1 2 SHDFYSHELSSPVDSPSSLR 20 0 Q13233 Q13233 MAP3K1 Mitogen-activated protein kinase kinase kinase 1 1 SHDFYSHELS(0.224)S(0.752)PVDS(0.006)PS(0.009)S(0.009)LR;SHDFYSHELS(0.112)S(0.857)PVDS(0.016)PS(0.007)S(0.007)LR 121.48 7.27E-06 34209000 4445.5 4534.9 6041.6 5062.7 4627.5 4602.7 4767.6 5257.3 4687.7 5930.9 TRUE FALSE 4507.750716 5030.035718 4516.323358 4738.001082 5257.843844 5418.92422 5672.227211 4810.65955 5137.97453 4722.179324 0.954591176 1.065193711 0.956406576 1.00335052 1.11343587 1.147547318 1.201188439 1.018737159 1.088051549 1 12.20523711 -6.747399019 9.704786249 1.10373831 0.997040392 0.382639198 0.061546332 0.231572795 142.718398 0.018545608 0.023245295 1.79E-07 6.747399019 -0.106697917 SHESNAPGS(ph)AGGQASEKPR ddPTM_K562_Paclitaxel_30min_R1 2 SHESNAPGSAGGQASEKPR 19 1 A0A0A0MSU2;A0A1C7CYX1;Q6PJG2 A0A0A0MSU2 ELMSAN1 ELM2 and SANT domain-containing protein 1 1 SHESNAPGS(1)AGGQASEKPR;SHESNAPGS(0.994)AGGQAS(0.005)EKPR 119.28 5.49E-05 8142000 4447.66 3626.79 7154.7 4100.59 3273.96 3867.73 3138.94 4626.35 3843.49 5565.61 TRUE FALSE 4509.940962 4022.775197 5348.407497 3837.596511 3719.928781 4553.61761 3734.537479 4233.312691 4212.674388 4431.335627 1.01773852 0.907801967 1.206951571 0.866013508 0.839459949 1.027594837 0.84275663 0.955313036 0.950655681 1 12.11352588 SHGLEPAAPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 SHGLEPAAPSPR 12 0 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 SHGLEPAAPS(1)PR 98.156 0.0052878 0 854.16 890.4 1090.2 927.17 908.22 928.24 813.14 1016.8 851.61 1031.8 TRUE FALSE 866.1208753 987.6168831 814.9655266 867.7054661 1031.93494 1092.850331 967.4290701 930.4164933 933.4109456 821.5185936 1.05429248 1.202184455 0.992023227 1.056221335 1.256130961 1.330280701 1.177610681 1.132556829 1.13620185 1 9.682149418 -5.237733159 22.54494653 1.149826676 1.054292076 0.05919765 0.101967324 5216.84359 4960996.5 0.02710294 1.248696042 5.78E-06 5.237733159 -0.0955346 SHHANS(ph)PTAGAAK ddPTM_K562_Paclitaxel_30min_R1 2 SHHANSPTAGAAK 13 0 K7EL66;K7ERD8;Q15555-2;Q15555-4;Q15555-5;Q15555-3;Q15555 K7EL66 MAPRE2 Microtubule-associated protein RP/EB family member 2 1 SHHANS(0.999)PT(0.001)AGAAK;SHHANS(0.999)PT(0.001)AGAAK 120.59 0.0012898 2018620 1251.09 991.52 2355.71 1149.38 889.98 813.13 856.68 1260.23 984.27 1359.78 TRUE FALSE 1268.60912 1099.777507 1760.981875 1075.663911 1011.210343 957.3271886 1019.230558 1153.165595 1078.813531 1082.65609 1.171756324 1.015814271 1.626538559 0.993541644 0.934008826 0.884239416 0.941416732 1.065126411 0.996450804 1 10.08035932 -6.482797231 24.99877591 0.967366199 1.256518581 0.455698377 0.149064442 475.9926381 296875.6798 0.041673944 0.061801994 3.29E-07 6.482797231 0.289152381 SHHAPMS(ph)PGSSGGGGQPLAR ddPTM_K562_Paclitaxel_30min_R1 8 SHHAPMSPGSSGGGGQPLAR 20 0 O14497-2;O14497 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 SHHAPMS(1)PGSSGGGGQPLAR;SHHAPMS(1)PGSSGGGGQPLAR;SHHAPMS(0.998)PGS(0.001)SGGGGQPLAR;SHHAPMS(0.999)PGSSGGGGQPLAR;SHHAPMS(1)PGSSGGGGQPLAR;SHHAPMS(0.999)PGSSGGGGQPLAR;SHHAPMS(1)PGSSGGGGQPLAR;SHHAPMS(1)PGSSGGGGQPLAR 135.33 5.04E-10 981631900 14052.95 13613.53 18676.04 15151.71 14228.38 13534.88 13514.21 15050.83 15395.25 16812.86 TRUE FALSE 14249.73466 15099.90124 13961.04272 14179.94714 16166.52624 15935.10093 16078.4608 13772.16805 16874.03255 13386.3899 1.064494218 1.128003992 1.04292814 1.059280899 1.207683801 1.190395696 1.201105071 1.028818684 1.260536461 1 13.70847932 -6.743593798 24.98969013 1.154296937 1.075360973 0.175291975 0.078347492 401.3285327 561989.5096 0.022037689 0.028392058 1.80E-07 6.743593798 -0.078935963 SHHGEHERPEFIAYPHLR ddPTM_K562_Paclitaxel_30min_R1 1 SHHGEHERPEFIAYPHLR 18 1 H0YIV9;P12074 H0YIV9 COX6A1 "Cytochrome c oxidase subunit 6A1, mitochondrial" 0 49.223 0.026093 6434200 924.97 1008.2 1075 1011 1368 1045.4 971.54 1324.3 1000.4 1340.4 FALSE TRUE 937.9224338 1118.278686 803.6029546 946.1589851 1554.34476 1230.787012 1155.884643 1211.792449 1096.49289 1067.225744 0.87884165 1.047837059 0.752983105 0.886559372 1.456434844 1.15325836 1.083074176 1.135460286 1.027423575 1 10.05964966 SHIAQWS(ph)PHTPPR ddPTM_K562_Paclitaxel_30min_R1 1 SHIAQWSPHTPPR 13 0 P40189-3;P40189 P40189-3 IL6ST Interleukin-6 receptor subunit beta 1 SHIAQWS(0.998)PHT(0.002)PPR 89.484 0.019346 0 1565.7 1520.8 2209.3 1901.3 1495.7 1945.5 1288.9 2012.3 2072.5 2398.8 TRUE FALSE 1587.624631 1686.846087 1651.534891 1779.359128 1699.439662 2290.507109 1533.462046 1841.342555 2271.572885 1909.923243 0.831250489 0.883200984 0.864712703 0.931639077 0.889794744 1.199266576 0.802891976 0.964092437 1.189352972 1 10.89929894 -6.505679828 0.547120334 1.033673786 0.810943066 0.289798485 0.110923347 1.909109564 1.034726781 0.081448385 0.233965776 3.12E-07 6.505679828 -0.22273072 SHIASPSPCPDRMPLPS(ph)PTESR ddPTM_K562_Paclitaxel_30min_R1 1 SHIASPSPCPDRMPLPSPTESR 22 1 O75665-3;O75665;A6NF31 O75665-3 OFD1 Oral-facial-digital syndrome 1 protein 1 SHIASPSPCPDRMPLPS(0.852)PT(0.139)ES(0.009)R 68.49 0.0051429 32697000 699.77 708.99 927.74 869.07 900.69 986.55 714.26 975.08 1171.5 870.85 TRUE FALSE 709.568939 786.3999259 693.5205629 813.33174 1023.379227 1161.500791 849.7871063 892.2408677 1284.027809 693.370292 1.023362188 1.134170205 1.000216725 1.173012097 1.475949054 1.67515223 1.225589149 1.286817272 1.851864472 1 9.437482214 -6.63398135 4.080516804 1.436139417 1.063889532 0.358161957 0.223693774 0.236946891 7.19531057 0.065864208 0.086394925 2.32E-07 6.63398135 -0.372249886 SHISDQS(ph)PLSSK ddPTM_K562_Paclitaxel_30min_R1 2 SHISDQSPLSSK 12 0 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 SHISDQS(0.998)PLS(0.002)SK;SHIS(0.001)DQS(0.995)PLS(0.003)S(0.001)K 244.71 8.38E-54 107790000 11179.3 9361.2 19230.3 12993.9 9201.5 8473.5 8269.7 11709.8 12277 14662.5 TRUE FALSE 11335.84469 10383.28747 14375.37293 12160.52941 10454.90008 9976.156251 9838.832404 10714.9794 13456.26071 11674.27445 0.971010639 0.889416085 1.23137185 1.041651836 0.895550308 0.854541864 0.842778919 0.917828294 1.152642142 1 13.51104527 SHLEPSGNPLPATPTTSAPSAPPAS(ph)SQGPDTAPRPSPPQEEAR ddPTM_K562_Paclitaxel_30min_R1 2 SHLEPSGNPLPATPTTSAPSAPPASSQGPDTAPRPSPPQEEAR 43 1 Q8N1F8 Q8N1F8 STK11IP Serine/threonine-protein kinase 11-interacting protein 1 SHLEPSGNPLPAT(0.002)PT(0.079)T(0.079)S(0.026)APS(0.091)APPAS(0.339)S(0.339)QGPDT(0.034)APRPS(0.013)PPQEEAR;SHLEPSGNPLPATPT(0.008)T(0.008)S(0.006)APS(0.047)APPAS(0.425)S(0.425)QGPDT(0.061)APRPS(0.021)PPQEEAR 69.065 3.40E-08 41933000 1766.78 1554.81 2897.84 2167.49 2140.2 1516.98 1925.73 2310.08 1389.42 2315.52 TRUE FALSE 1791.520371 1724.569414 2166.244452 2028.476893 2431.731474 1785.995104 2291.127215 2113.824285 1522.879999 1843.615753 0.97174282 0.935427792 1.174997799 1.10027097 1.319001245 0.968745847 1.242735755 1.146564452 0.826028958 1 10.84832228 -11.57961785 2.960118123 0.995068916 1.086596788 0.02000712 0.144158589 55689166.85 75443637.01 2227341.827 0.035831633 2.63E-12 11.57961785 0.091527872 SHLEVPLEENVNRR ddPTM_K562_Paclitaxel_30min_R1 2 SHLEVPLEENVNRR 14 1 M0R2F5;Q96CT7 M0R2F5 CCDC124 Coiled-coil domain-containing protein 124 0 ; 91.093 0.0063343 30375000 1125.77 1068.24 1321.38 1375.35 1109.25 994.52 916.02 1181.58 885.79 970.69 FALSE TRUE 1141.534253 1184.874056 987.7812764 1287.141207 1260.34863 1170.884158 1089.830013 1081.197404 970.8740873 772.8628452 1.477020484 1.533097448 1.278080946 1.665419958 1.630753293 1.514996051 1.410120851 1.398951199 1.256204892 1 9.594068601 -8.977511932 1.010548342 1.001640476 1.514399585 0.719300215 0.099612942 0.307371912 0.708409448 0.099533047 0.033331868 1.05E-09 8.977511932 0.512759109 SHLVHGS(ph)SPGVMGTSVATSASK ddPTM_K562_Paclitaxel_30min_R1 1 SHLVHGSSPGVMGTSVATSASK 22 0 A0A494C1F2;P35658-2;P35658-4;P35658;P35658-3;P35658-5;A0A0A0MSW3;H0YF36 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 S(0.001)HLVHGS(0.5)S(0.5)PGVMGTSVATSASK 87.792 0.00046556 22739000 2863.8 2009.2 4749.9 3180.8 2178.2 2013.7 1939 2780.7 2787.5 3593.2 TRUE FALSE 2903.902036 2228.571251 3550.728999 2976.797725 2474.907717 2370.801421 2306.915128 2544.462178 3055.25183 2860.903868 1.015029575 0.778974532 1.241121395 1.040509525 0.865078951 0.828689649 0.806358841 0.889391009 1.067932364 1 11.48225531 -6.759484844 24.97435365 0.894839591 1.017642942 0.144902263 0.127112082 96.26108865 1229975.545 0.039476238 0.048415881 1.74E-07 6.759484844 0.122803351 SHLVHGSS(ph)PGVMGTSVATSASK ddPTM_K562_Paclitaxel_30min_R1 1 SHLVHGSSPGVMGTSVATSASK 22 0 A0A494C1F2;P35658-2;P35658-4;P35658;P35658-3;P35658-5;A0A0A0MSW3;H0YF36 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 SHLVHGS(0.012)S(0.988)PGVMGTSVATSASK 120.92 2.25E-06 20718000 3554.5 2961.4 5712.4 4527.5 3180.8 2895.9 2958.9 3699.1 3696.4 4417.2 TRUE FALSE 3604.273967 3284.735667 4270.23397 4237.126414 3614.078811 3409.447205 3520.335829 3384.838366 4051.455736 3516.972215 1.024822986 0.933966908 1.214179046 1.204765393 1.027610851 0.969426824 1.000956395 0.962429658 1.151972631 1 11.78011822 -6.974760458 24.98951595 1.011932188 1.094607845 0.144499093 0.090132553 456.2908482 451768.8238 0.029874877 0.033873915 1.06E-07 6.974760458 0.082675657 SHMSGSPGPGGS(ph)NTAPSTPVIGGSDK ddPTM_K562_Paclitaxel_30min_R1 1 SHMSGSPGPGGSNTAPSTPVIGGSDK 26 0 A0A499FIX8;H7BXI1;A0A087WXU3;A0FGR8-5;A0FGR8-2;A0FGR8;A0FGR8-6 A0A499FIX8 ESYT2 Extended synaptotagmin-2 1 SHMSGS(0.002)PGPGGS(0.312)NT(0.312)APS(0.312)T(0.052)PVIGGS(0.011)DK 52.061 0.014898 19167000 1159.4 1085.8 1098.6 1416.9 980.29 1575.7 1081.5 1168.5 1793.7 983.63 TRUE FALSE 1175.635177 1204.351316 821.2448427 1326.026376 1113.822094 1855.128271 1286.708979 1069.228631 1965.992899 783.1656661 1.501132172 1.537798921 1.048622122 1.693162039 1.42220496 2.368755873 1.642958872 1.365264947 2.510315486 1 9.613173708 -6.457882521 11.75153223 1.746473619 1.378238676 0.116437828 0.440262295 2.23405684 400.4257604 0.119197014 0.176735671 3.48E-07 6.457882521 -0.368234943 SHPAMS(ph)PGTPGPTMGR ddPTM_K562_Paclitaxel_30min_R1 1 SHPAMSPGTPGPTMGR 16 0 A0A3F2YNW7;Q8NFD5;Q8NFD5-2;Q8NFD5-3;A0A1B0GUC6;A0A1B0GUG2;A0A1B0GU09;A0A6I8PTU7 A0A3F2YNW7 ARID1B AT-rich interactive domain-containing protein 1B 1 S(0.001)HPAMS(0.997)PGT(0.003)PGPTMGR 177.39 1.81E-09 12266000 1393.4 1297.5 2157.1 1650.5 1644 1303.3 1271.8 1652.8 1536.3 1650.4 TRUE FALSE 1412.911899 1439.165438 1612.513426 1544.644317 1867.940633 1534.421956 1513.117411 1512.384324 1683.868479 1314.047574 1.075236488 1.095215627 1.227134739 1.175485841 1.421516747 1.167706547 1.15149363 1.150935745 1.281436466 1 10.35980179 -11.10508653 4.453964057 0.999981303 1.194940423 0.275499231 0.094378566 73039001.67 0.577904804 15083.51681 0.023769964 7.85E-12 11.10508653 0.194959119 SHPLDLS(ph)PNVQSR ddPTM_K562_Paclitaxel_30min_R1 2 SHPLDLSPNVQSR 13 0 Q9ULH1;Q9ULH1-2;H0YBM4;H0YBF7;A0A0A0MRE5 Q9ULH1 ASAP1 "Arf-GAP with SH3 domain, ANK repeat and PH domain-containing protein 1" 1 SHPLDLS(0.998)PNVQS(0.002)R;SHPLDLS(1)PNVQSR 125.61 0.00068427 45300000 4625.7 4321.3 5333.2 4510.8 4467.1 4152 3578.4 4369.9 3704.1 5002.1 TRUE FALSE 4690.474072 4793.114148 3986.7677 4221.497478 5075.594649 4888.298903 4257.382719 3998.649719 4059.895355 3982.669274 1.177721209 1.203492888 1.001029065 1.059966868 1.274420319 1.227392627 1.068977218 1.004012496 1.019390533 1 11.95951997 -7.975115515 5.95615279 1.013433736 1.153342715 0.45209393 0.074515691 0.182071791 20.60949046 0.036107262 0.02351759 1.06E-08 7.975115515 0.139908978 SHS(ph)GT(ph)SPDNTAPPPPPPRPQPSHSR ddPTM_K562_Paclitaxel_30min_R1 1 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 Q96D71-3;Q96D71;E9PMG1;H0YDT0;Q96D71-4 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 2 S(0.171)HS(0.817)GT(0.554)S(0.458)PDNT(0.001)APPPPPPRPQPSHSR 93.392 5.26E-05 17868000 599.78 567.6 548.22 519.63 619.31 495.92 346.97 635.78 518.8 595.7 TRUE FALSE 608.1787705 629.5724875 409.8150807 486.3032576 703.670507 583.8644489 412.8057462 581.7665206 568.6330581 474.296013 1.282276793 1.327383048 0.864049179 1.02531593 1.48361042 1.23101277 0.870354662 1.226589523 1.198899089 1 8.889643931 -15 0.197853563 0.290829944 1.189437854 0.068907828 0.186380259 480.6744239 4.74532814 135.3481692 0.48990902 1.00E-15 15 0.89860791 SHS(ph)GTSPDNTAPPPPPPRPQPSHSR ddPTM_K562_Paclitaxel_30min_R1 1 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 Q96D71-3;Q96D71;E9PMG1;H0YDT0;Q96D71-4 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 1 S(0.161)HS(0.518)GT(0.161)S(0.161)PDNT(0.001)APPPPPPRPQPSHSR 65.881 0.001648 77704000 805.98 539.34 1105.7 837.77 715.4 836.15 707.38 802.44 865.24 809.1 TRUE FALSE 817.2662067 598.2269651 826.5523599 784.0391819 812.8495918 984.4294624 841.6016622 734.2677133 948.350168 644.2049759 1.268643114 0.92862829 1.283058019 1.217064772 1.261787199 1.528130796 1.306419065 1.139804473 1.472124873 1 9.331375994 -5.877704289 12.3652536 1.288919688 1.098758009 0.158496996 0.161403009 0.66363633 68.20172326 0.040387348 0.084130133 1.33E-06 5.877704289 -0.190161679 SHS(ph)LSRPGPTEGDAEGEAEGPVGSTLGSYATLTR ddPTM_K562_Paclitaxel_30min_R1 1 SHSLSRPGPTEGDAEGEAEGPVGSTLGSYATLTR 34 1 Q8WXE0-2;Q8WXE0 Q8WXE0-2 CASKIN2 Caskin-2 1 S(0.248)HS(0.623)LS(0.111)RPGPT(0.018)EGDAEGEAEGPVGSTLGSYATLTR 43.185 0.018837 28381000 161.37 140.5 346.76 263.76 300.37 227.17 51.509 205.41 254.21 323.99 TRUE FALSE 163.6296779 155.8402651 259.2161493 246.8436141 341.2854793 267.4554099 61.28256385 187.9591384 278.6280063 257.9606602 0.634320279 0.604124152 1.004866979 0.956904103 1.323013668 1.036806968 0.237565541 0.728634894 1.080118209 1 8.011007256 -5.751050941 24.88171632 0.906666294 0.619222031 0.16651376 0.268531682 407.9117087 976983.7666 0.075507146 0.19507539 1.77E-06 5.751050941 -0.287444263 SHS(ph)PSSPDPDTPSPVGDSR ddPTM_K562_Paclitaxel_30min_R1 3 SHSPSSPDPDTPSPVGDSR 19 0 E9PNJ4;Q13586;G0XQ39;H0YDB2 E9PNJ4 STIM1 Stromal interaction molecule 1 1 S(0.211)HS(0.75)PS(0.028)S(0.01)PDPDTPSPVGDSR;S(0.036)HS(0.599)PS(0.28)S(0.085)PDPDTPSPVGDSR;S(0.18)HS(0.762)PS(0.043)S(0.014)PDPDTPSPVGDSR 219.61 2.51E-30 574978000 4444.18 4639.5 6270.6 5317.27 4810.77 4421.27 4333.04 5284.4 4791.83 5655 TRUE FALSE 4506.412231 5146.0563 4687.509476 4976.244101 5466.078321 5205.320157 5155.21172 4835.457236 5252.106682 4502.507896 1.000867147 1.142931099 1.041088563 1.105216074 1.214007493 1.15609351 1.144964504 1.07394753 1.166484724 1 12.13651309 -5.254747037 24.06365505 1.120922444 1.000867053 0.243358345 0.060406269 635.4493085 2284782.385 0.014836393 0.134834274 5.56E-06 5.254747037 -0.120055391 SHS(ph)SPSLHQDEAPTTAK ddPTM_K562_Paclitaxel_30min_R1 2 SHSSPSLHQDEAPTTAK 17 0 Q8NDX1-2;Q8NDX1 Q8NDX1-2 PSD4 PH and SEC7 domain-containing protein 4 1 S(0.027)HS(0.779)S(0.191)PS(0.003)LHQDEAPTTAK;S(0.177)HS(0.792)S(0.03)PS(0.001)LHQDEAPTTAK 132.6 1.66E-07 50473000 2620.4 2349.6 4374.2 2820.8 2164.2 2395.2 2145.6 2521.7 2773.4 3915.9 TRUE FALSE 2657.093685 2606.137274 3269.879111 2639.886513 2459.00068 2819.95509 2552.716399 2307.465845 3039.797462 3117.837431 0.852223294 0.835879783 1.048765108 0.846704349 0.788687908 0.904458668 0.818745831 0.740085363 0.97496984 1 11.60632999 SHSESASPSALSS(ph)SPNNLS(ph)PTGWSQPK ddPTM_K562_Paclitaxel_30min_R1 1 SHSESASPSALSSSPNNLSPTGWSQPK 27 0 H7C155;P04049;P04049-2 H7C155 RAF1 RAF proto-oncogene serine/threonine-protein kinase 2 SHSESASPSALS(0.078)S(0.47)S(0.47)PNNLS(0.972)PT(0.01)GWS(0.001)QPK 114.13 2.31E-11 24596000 1511 1391.3 2224.7 1504.2 1132.1 1050.9 1015.4 1307.8 1457.9 1865.2 TRUE FALSE 1532.158662 1543.206839 1663.04697 1407.727345 1286.311187 1237.26236 1208.066849 1196.694227 1597.937809 1485.071216 1.031707197 1.03914669 1.119843245 0.947919082 0.866161281 0.833133352 0.813474018 0.805816054 1.076000795 1 10.5363164 -6.473302026 4.312471574 0.882934783 1.06009119 0.429176986 0.083401332 0.189407414 7.445420726 0.024274099 0.035576344 3.36E-07 6.473302026 0.177156406 SHSESASPSALSSS(ph)PNNLS(ph)PTGWSQPK ddPTM_K562_Paclitaxel_30min_R1 1 SHSESASPSALSSSPNNLSPTGWSQPK 27 0 H7C155;P04049;P04049-2 H7C155 RAF1 RAF proto-oncogene serine/threonine-protein kinase 2 SHSESASPSALS(0.013)S(0.144)S(0.875)PNNLS(0.935)PT(0.032)GWSQPK 129.07 1.10E-14 22703000 1602.8 1465.3 2783.2 1980.1 1614.1 1331.3 1305.6 1838.5 1587 1699.8 TRUE FALSE 1625.244145 1625.286409 2080.546738 1853.105249 1833.967747 1567.387363 1553.330784 1682.307949 1739.438441 1353.379827 1.200878063 1.200909292 1.537296993 1.369242552 1.355102027 1.158128215 1.147741937 1.243041987 1.285255186 1 10.40235107 -7.260033074 24.88991744 1.180830366 1.338763094 0.346123199 0.113009869 157.2158492 2782548.132 0.040022275 0.037952637 5.49E-08 7.260033074 0.157932728 SHSGT(ph)S(ph)PDNTAPPPPPPRPQPSHSR ddPTM_K562_Paclitaxel_30min_R1 1 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 Q96D71-3;Q96D71;E9PMG1;H0YDT0;Q96D71-4 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 2 S(0.059)HS(0.238)GT(0.767)S(0.746)PDNT(0.189)APPPPPPRPQPSHSR 71.289 0.0030447 3250600 426.46 352.56 952.67 575.61 565.26 468.46 548.57 742 496.82 553.39 TRUE FALSE 432.4317557 391.0536931 712.156676 538.6929509 642.2579819 551.5348035 652.6582938 678.9624686 544.5417809 440.6088142 0.981441455 0.887530345 1.616301474 1.222610473 1.457660313 1.251756174 1.481264724 1.540964335 1.235884901 1 8.783354546 -5.744329804 24.99627965 1.37048512 0.934485572 0.473336396 0.174674053 181.6008959 265306.1664 0.040998986 0.107885981 1.80E-06 5.744329804 -0.435999548 SHSGT(ph)SPDNTAPPPPPPRPQPSHSR ddPTM_K562_Paclitaxel_30min_R1 2 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 Q96D71-3;Q96D71;E9PMG1;H0YDT0;Q96D71-4 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 1 S(0.146)HS(0.126)GT(0.543)S(0.146)PDNT(0.024)APPPPPPRPQPS(0.008)HS(0.008)R;S(0.01)HS(0.061)GT(0.499)S(0.429)PDNT(0.001)APPPPPPRPQPSHSR 65.881 0.0034553 3133500 279.28 277.413 521.95 333.04 199.3 283.39 182.06 161.58 202.61 475.35 TRUE FALSE 283.1907817 307.7018895 390.1772671 311.680305 226.4480342 333.6452375 216.6049346 147.8527704 222.0715958 378.4734091 0.748244856 0.813007947 1.030923858 0.823519691 0.598319535 0.881555294 0.572312161 0.390655636 0.586756138 1 8.564048132 -6.667385777 5.360136038 0.647053529 0.868897965 0.203001368 0.173606932 0.300336169 13.6424553 0.053125387 0.068650519 2.15E-07 6.667385777 0.221844436 SHSGTS(ph)PDNTAPPPPPPRPQPSHSR ddPTM_K562_Paclitaxel_30min_R1 1 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 Q96D71-3;Q96D71;E9PMG1;H0YDT0;Q96D71-4 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 1 S(0.051)HS(0.128)GT(0.379)S(0.44)PDNT(0.002)APPPPPPRPQPSHSR 49.485 0.019232 92417000 976.16 823.91 1218 999.88 819.35 816.99 682.91 725.75 831.38 842.5 TRUE FALSE 989.8292517 913.8672801 910.500836 935.7521721 930.9593417 961.8717054 812.4886075 664.0930075 911.2377637 670.7980375 1.475599504 1.362358309 1.357339743 1.394983467 1.387838499 1.433921466 1.21122687 0.990004398 1.358438327 1 9.389734658 -7.896097251 4.44041559 1.125305335 1.396586148 0.630959384 0.09981976 0.135938189 4.679535464 0.04066503 0.026786618 1.27E-08 7.896097251 0.271280814 SHSGTSPDNT(ph)APPPPPPRPQPSHS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SHSGTSPDNTAPPPPPPRPQPSHSR 25 1 Q96D71-3;Q96D71;E9PMG1;H0YDT0;Q96D71-4 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 2 S(0.158)HS(0.139)GT(0.139)S(0.139)PDNT(0.426)APPPPPPRPQPS(0.273)HS(0.727)R 48.872 0.021132 21876000 464.39 313.71 568.99 463.44 398.58 489.44 371.34 394.98 495.64 617.39 TRUE FALSE 470.8928928 347.9619187 425.3414373 433.7170327 452.873344 576.2353119 441.7998265 361.4239836 543.2484366 491.5655791 0.957945212 0.707864695 0.865279131 0.882317744 0.921287745 1.17224504 0.898760705 0.735250797 1.105139293 1 8.941240087 -6.64742954 2.508257763 0.966387005 0.833617722 0.186711169 0.124154936 0.514543125 6.577639559 0.040662882 0.055426602 2.25E-07 6.64742954 -0.132769282 SHSS(ph)PSQIPK ddPTM_K562_Paclitaxel_30min_R1 2 SHSSPSQIPK 10 0 Q9H792;H0YN99 Q9H792 PEAK1 Pseudopodium-enriched atypical kinase 1 1 SHS(0.142)S(0.856)PS(0.002)QIPK;SHS(0.083)S(0.909)PS(0.008)QIPK 148.28 0.00035133 10618900 6555.9 5800.7 11535.5 7243.2 6213.1 5407.8 4763.6 7270.3 6494 8698.7 TRUE FALSE 6647.702827 6434.040043 8623.220356 6778.653571 7059.429409 6366.797401 5667.468232 6652.642635 7117.777716 6925.900165 0.95983232 0.928982499 1.245068533 0.978739718 1.019279695 0.919273632 0.818300596 0.960545557 1.027704348 1 12.75778588 -7.17638702 4.400941091 0.934901816 1.032341074 0.147781336 0.095657347 0.418565488 14.62651217 0.033734735 0.033545093 6.66E-08 7.17638702 0.097439258 SHT(ph)EEDCTEELFDFLHAR ddPTM_K562_Paclitaxel_30min_R1 1 SHTEEDCTEELFDFLHAR 18 0 P07919 P07919 UQCRH "Cytochrome b-c1 complex subunit 6, mitochondrial" 1 S(0.441)HT(0.559)EEDCTEELFDFLHAR 101.62 0.0014479 0 492.72 429.33 517.78 535.92 430.82 389.04 497.15 454.29 467.99 641.71 TRUE FALSE 499.6196002 476.2057013 387.0600352 501.5484899 489.5049778 458.0307816 591.4816172 415.6952289 512.9425305 510.9291498 0.97786474 0.932038623 0.757561074 0.981639999 0.958068214 0.896466334 1.157658782 0.813606405 1.003940626 1 8.996979437 SHTEEDCTEELFDFLHAR ddPTM_K562_Paclitaxel_30min_R1 4 SHTEEDCTEELFDFLHAR 18 0 P07919 P07919 UQCRH "Cytochrome b-c1 complex subunit 6, mitochondrial" 0 ;;; 205.66 3.34E-19 80903000 7049.7 7087 8338.5 7202.5 5873.4 5903.3 7048.9 8572 7549.4 9920.3 FALSE TRUE 7148.41755 7860.782627 6233.342546 6740.563887 6673.456517 6950.167369 8386.391977 7843.755095 8274.553602 7898.537415 0.905030536 0.995220028 0.789176808 0.85339393 0.844897753 0.879930929 1.061765177 0.993064245 1.047605799 1 12.94736982 -7.751785533 24.89377353 1.025030825 0.876619901 0.654795811 0.052520095 122.4136107 315661.0109 0.021256847 0.016249503 1.77E-08 7.751785533 -0.148410924 SHTPSFTSCSSSHS(ph)PPGPSR ddPTM_K562_Paclitaxel_30min_R1 2 SHTPSFTSCSSSHSPPGPSR 20 0 Q5T481 Q5T481 RBM20 RNA-binding protein 20 1 SHTPSFTS(0.001)CS(0.008)S(0.023)S(0.063)HS(0.89)PPGPS(0.015)R;SHTPSFTSCS(0.001)S(0.02)S(0.142)HS(0.831)PPGPS(0.007)R 100.39 0.00045973 62390000 2115.12 2134.06 3066.5 2644.1 2404.16 2307.6 2331.4 2412.6 2232 2855.1 TRUE FALSE 2144.738206 2367.063888 2292.324149 2474.519261 2731.647295 2716.82046 2773.770979 2207.634571 2446.393573 2273.229053 0.943476507 1.041278214 1.008399988 1.088548141 1.201659503 1.195137136 1.220189833 0.971144799 1.076175571 1 11.15052734 -6.317279849 3.540634002 1.120663351 1.000025107 0.274466643 0.081264262 0.323893078 8.203749962 0.025048284 0.040415455 4.82E-07 6.317279849 -0.120638244 SHVEDGDIAGAPASS(ph)PEAPPAEQDPVQLK ddPTM_K562_Paclitaxel_30min_R1 1 SHVEDGDIAGAPASSPEAPPAEQDPVQLK 29 0 A0A087WU26;F8W7S5;A0A087WVV2;Q9P2E9-3;Q9P2E9 A0A087WU26 RRBP1 Ribosome-binding protein 1 1 SHVEDGDIAGAPAS(0.084)S(0.916)PEAPPAEQDPVQLK 119.35 1.21E-12 16962000 4110.8 3487.6 6571 4788.2 3743.4 3406 3304.4 4743.4 4404.2 5359.5 TRUE FALSE 4168.363883 3868.387962 4912.069781 4481.106283 4253.314456 4010.006277 3931.39265 4340.418563 4827.243088 4267.230958 0.976831093 0.906533534 1.151114113 1.050120401 0.996738751 0.939720938 0.921298305 1.017151076 1.131235486 1 12.05908448 -8.536451685 24.39373895 1.068476322 0.993205302 0.139421705 0.0725438 367.0806949 659711.13 0.051411995 0.01945662 2.91E-09 8.536451685 -0.07527102 SHVSSEPYEPIS(ph)PPQVPVVHEK ddPTM_K562_Paclitaxel_30min_R1 5 SHVSSEPYEPISPPQVPVVHEK 22 0 O75376-2;O75376;A0A088AWL3;E7EVK1;J3KS29;J3QKP0 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 SHVSSEPY(0.004)EPIS(0.996)PPQVPVVHEK;SHVSSEPY(0.002)EPIS(0.998)PPQVPVVHEK;SHVSSEPYEPIS(1)PPQVPVVHEK;SHVSSEPYEPIS(1)PPQVPVVHEK;SHVSSEPYEPIS(1)PPQVPVVHEK 119.32 2.29E-08 111593000 12150.68 10272 19256.8 14073 10676.39 9989.25 9478.63 13416.17 10281.42 16872.4 TRUE FALSE 12320.82701 11393.5317 14395.18267 13170.42077 12130.69507 11760.70323 11277.15056 12276.38262 11268.99633 13433.79562 0.91715159 0.848124538 1.071564812 0.980394606 0.902998335 0.875456466 0.839461228 0.913843188 0.838854234 1 13.71357936 -6.909342216 5.478659503 0.885211232 0.954725942 0.151465697 0.06741542 0.365718784 17.467106 0.021479309 0.024457638 1.23E-07 6.909342216 0.06951471 SHVTEEEEEEEEEES(ph)DS ddPTM_K562_Paclitaxel_30min_R1 2 SHVTEEEEEEEEEESDS 17 0 O75971-2;O75971 O75971-2 SNAPC5 snRNA-activating protein complex subunit 5 1 SHVTEEEEEEEEEES(0.5)DS(0.5);SHVTEEEEEEEEEES(0.5)DS(0.5) 219.97 5.32E-25 58886000 3327.2 2824.8 4377.9 3323.2 2942.2 2881.6 2380.36 3045.63 3047.3 3270.3 TRUE FALSE 3373.791065 3133.221217 3272.645 3110.064826 3342.977452 3392.6113 2832.020884 2786.884721 3340.006781 2603.811065 1.2957127 1.203321262 1.256867307 1.194427994 1.283878657 1.302940657 1.087644538 1.070309885 1.282737763 1 11.34640905 -14.99999967 0.118934291 0.264633621 1.326972596 0.470879129 0.07500021 141.7088403 1.093973746 24.82724176 0.76903516 1.00E-15 14.99999967 1.062338975 SHVVREDLNPR ddPTM_K562_Paclitaxel_30min_R1 1 SHVVREDLNPR 11 1 Q9BSJ8;Q9BSJ8-2 Q9BSJ8 ESYT1 Extended synaptotagmin-1 0 88.134 0.021609 3111100 767.9 683.29 873.99 920.45 569.52 561.49 468.96 807.13 876.23 755.44 FALSE TRUE 778.6529692 757.8939129 653.3404151 861.4164568 647.0982661 661.0623678 557.9427119 738.5592686 960.3958066 601.4809133 1.294559731 1.260046489 1.086219697 1.432159255 1.075841729 1.09905793 0.927614991 1.227901422 1.596718674 1 9.232375147 SHWDDST(ph)SDSELEK ddPTM_K562_Paclitaxel_30min_R1 1 SHWDDSTSDSELEK 14 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 SHWDDS(0.087)T(0.455)S(0.455)DS(0.003)ELEK 97.203 0.020847 12444000 1830.2 1456.9 3048.1 1887 1374.4 1300.9 1219.2 1888.3 1110.8 2891.9 TRUE FALSE 1855.828447 1615.969269 2278.569457 1765.976266 1561.616549 1531.596349 1450.536835 1727.877129 1217.497303 2302.529193 0.805995621 0.701823575 0.989594166 0.766972367 0.678217915 0.665179992 0.629975437 0.750425721 0.528765197 1 11.16900373 -6.559038196 5.829815009 0.691945918 0.828701771 0.14405832 0.131269755 0.294209798 26.86666456 0.036701418 0.048379618 2.76E-07 6.559038196 0.136755852 SHWDDSTS(ph)DSELEK ddPTM_K562_Paclitaxel_30min_R1 2 SHWDDSTSDSELEK 14 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 SHWDDS(0.036)T(0.224)S(0.714)DS(0.026)ELEK;SHWDDS(0.002)T(0.223)S(0.768)DS(0.007)ELEK 201.3 2.67E-09 72960000 3889.2 2649.02 6078.6 3962.6 2972.6 2536.8 2841.61 3905.9 2825.42 4818.7 TRUE FALSE 3943.660799 2938.248962 4543.982251 3708.456572 3377.518447 2986.665862 3380.790663 3574.069415 3096.814215 3836.646295 1.027892721 0.765837853 1.184363087 0.966588079 0.880330942 0.778457442 0.881183827 0.931560832 0.807166983 1 11.90563005 -6.743182344 5.16197657 0.870836563 0.985924816 0.180168855 0.110816291 0.308396411 22.3922499 0.033205164 0.041327311 1.81E-07 6.743182344 0.115088253 SHWDDSTS(ph)DSELEKGAR ddPTM_K562_Paclitaxel_30min_R1 1 SHWDDSTSDSELEKGAR 17 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 SHWDDS(0.037)T(0.158)S(0.804)DSELEKGAR 78.794 0.012692 19539000 871.58 818.27 1586.1 1221.2 1117.4 741.4 783.77 1345.8 1650.3 1430.3 TRUE FALSE 883.7848091 907.6114858 1185.669438 1142.877698 1269.608798 872.8768802 932.4862659 1231.46589 1808.818689 1138.804075 0.776063968 0.796986511 1.04115314 1.003577106 1.114861481 0.766485561 0.818829408 1.081367653 1.588349329 1 10.15330385 -8.52807218 24.98689071 1.307736095 0.913469002 0.448296832 0.173619132 126.9183421 610612.002 0.113981416 0.043395144 2.96E-09 8.52807218 -0.394267094 SIAS(ph)HVR ddPTM_K562_Paclitaxel_30min_R1 1 SIASHVR 7 0 A0A0A0MSJ0;Q86XP3-2;Q86XP3 A0A0A0MSJ0 DDX42 ATP-dependent RNA helicase DDX42 1 SIAS(1)HVR 87.181 0.024965 6741500 166.88 0 143.12 185.56 145.65 150.74 43.646 139.05 194.95 0 TRUE FALSE 169.2168349 0 106.9875859 173.6590121 165.4899959 177.4716225 51.92760065 127.2368346 213.6758186 0 0 SIDS(ph)T(ph)KSRS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SIDSTKSRSR 10 2 Q8N2Y8 Q8N2Y8 RUSC2 Iporin 3 S(0.086)IDS(0.926)T(0.979)KS(0.009)RS(1)R 101.71 0.014345 105210000 0 0 0 0 0 0 0 0 99.501 0 TRUE FALSE 0 0 0 0 0 0 0 0 109.0585156 0 0 SIEAVHEDIR ddPTM_K562_Paclitaxel_30min_R1 1 SIEAVHEDIR 10 0 H7C312;H7BZ20;P23919-2;P23919 H7C312 DTYMK Thymidylate kinase 0 150.15 0.00062139 6783000 3579.7 3444.9 4093.8 3827.4 3269.1 3497.5 3397.3 3615.1 3263.9 4295.5 FALSE TRUE 3629.826844 3821.025832 3060.269559 3581.927695 3714.406766 4117.732518 4041.91994 3307.97469 3577.412178 3420.074742 1.061329684 1.117234599 0.894796105 1.047324391 1.086060115 1.203989044 1.181822108 0.967222923 1.046004093 1 11.73981214 -4.955815984 13.82055559 1.064503641 1.048480511 0 0.089178081 249983284.6 2513812781 0.023776898 99083785.2 1.11E-05 4.955815984 -0.01602313 SIFEMYEPSELESS(ph)HLTDQDNEIR ddPTM_K562_Paclitaxel_30min_R1 1 SIFEMYEPSELESSHLTDQDNEIR 24 0 Q7KZ85;Q7KZ85-3 Q7KZ85 SUPT6H Transcription elongation factor SPT6 1 SIFEMYEPSELES(0.27)S(0.707)HLT(0.023)DQDNEIR 104.01 8.57E-06 4471100 503.61 556.54 559.16 472.33 505.47 313.62 644.27 730.13 573.02 850.52 TRUE FALSE 510.6620938 617.3049193 417.9931424 442.0368679 574.3235717 369.2361036 766.5168692 668.1008992 628.0611313 677.1835571 0.754097007 0.911576947 0.617252351 0.652757828 0.848106198 0.545252612 1.131918903 0.986587598 0.927460693 1 9.403403133 -7.769097057 24.99960586 1.010374101 0.728037365 0.622068325 0.110659108 121.8740528 397871.2733 0.045700727 0.031468201 1.70E-08 7.769097057 -0.282336736 SIINASLILTS(ph)QRISCS(ph)PKTR ddPTM_K562_Paclitaxel_30min_R1 1 SIINASLILTSQRISCSPKTR 21 2 A0A0X1KG74;Q8N8H1 A0A0X1KG74 ZNF321P Putative protein ZNF321 2 SIINASLILT(0.05)S(0.788)QRIS(0.313)CS(0.692)PKT(0.156)R 53.554 0.023191 21545000 499.34 343.76 272.43 364.08 350.08 415.26 532.81 306.36 616.53 425.99 TRUE FALSE 506.3323006 381.2928793 203.6516771 340.7295384 397.7668229 488.9005305 633.907916 280.3328058 675.7504612 339.1730042 1.492843753 1.124184044 0.600435986 1.004589204 1.17275496 1.441448831 1.868981046 0.826518627 1.992347424 1 8.405877536 -7.108105427 3.353685207 1.441871544 1.032045657 0.172990183 0.383199708 0.422157457 8.885456476 0.129126573 0.131339515 7.80E-08 7.108105427 -0.409825887 SILAKPSSS(ph)PDPR ddPTM_K562_Paclitaxel_30min_R1 1 SILAKPSSSPDPR 13 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 SILAKPS(0.082)S(0.376)S(0.542)PDPR 102.9 0.021075 7900900 697.99 583.81 1060.4 869.07 544.05 738.85 583.9 601.24 651.32 925.39 TRUE FALSE 707.7640135 647.5523501 792.6889051 813.33174 618.1588208 869.8746735 694.6919768 550.1609092 713.8821962 736.79501 0.960598272 0.87887722 1.075860849 1.103877916 0.838983452 1.180619659 0.942856517 0.746694673 0.968902051 1 9.525119481 -7.998960773 24.99998987 0.883634122 1.005730318 0.132283873 0.114295538 56.57576434 1360987.9 0.046985386 0.031387417 1.00E-08 7.998960773 0.122096196 SILPYPVS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 SILPYPVSPK 10 0 Q8IWI9-3;Q8IWI9;H3BP52;H3BTF4 Q8IWI9-3 MGA MAX gene-associated protein 1 SILPY(0.001)PVS(0.999)PK;SILPYPVS(1)PK 124.3 0.0019304 118518000 10695.3 9189.5 17988.2 12434.9 8902.2 8096.7 8231.9 10285.2 10423.5 14682.6 TRUE FALSE 10845.0672 10192.84069 13446.85643 11637.38117 10114.83036 9532.536062 9793.860052 9411.408062 11424.72375 11690.27806 0.927699678 0.871907463 1.15025976 0.995475138 0.865234369 0.815424236 0.837778195 0.805062806 0.977284175 1 13.51302163 -6.762240435 24.99142734 0.868030816 0.989870969 0.228970753 0.089746452 28.02158049 874234.8684 0.027705239 0.033295125 1.73E-07 6.762240435 0.121840154 SILS(ph)PGGSCGPIK ddPTM_K562_Paclitaxel_30min_R1 1 SILSPGGSCGPIK 13 0 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347;P78347-5 A0A494C1K3 GTF2I General transcription factor II-I 1 S(0.012)ILS(0.988)PGGSCGPIK 170.95 5.39E-05 36619000 3176.3 2496.8 4239.9 2949.1 2357.7 1966.6 2201.6 3105.4 2020.8 3756.6 TRUE FALSE 3220.778 2769.409068 3169.484807 2759.957926 2678.858656 2315.348898 2619.342107 2841.576887 2214.906869 2991.002858 1.076822107 0.925913213 1.059672945 0.922753356 0.895638949 0.774104542 0.875740423 0.950041515 0.740523154 1 11.54641357 -6.537600815 2.744576647 0.864934288 1.011309574 0.398430416 0.080398747 0.269346012 4.106447953 0.023651395 0.034311539 2.90E-07 6.537600815 0.146375286 SILVS(ph)PTGPSR ddPTM_K562_Paclitaxel_30min_R1 3 SILVSPTGPSR 11 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 SILVS(0.9)PT(0.1)GPSR;SILVS(0.697)PT(0.301)GPS(0.002)R;S(0.029)ILVS(0.967)PT(0.005)GPSR 159.44 0.00070498 303175000 5118.1 5172.6 5944 5751.1 4960.9 4392.1 4813.3 5171.1 4749.4 6066.2 TRUE FALSE 5189.769191 5737.361961 4443.363686 5382.250187 5636.658569 5170.977267 5726.598548 4731.782778 5205.601091 4829.90511 1.074507485 1.187882956 0.919969147 1.114359405 1.167032983 1.070616741 1.185654463 0.979684418 1.077785375 1 12.23777913 -8.282599614 24.97867856 1.021551176 1.100766577 0.198981216 0.076835573 1472.892006 1738670.865 0.041324366 0.019878127 5.22E-09 8.282599614 0.0792154 SILYDER ddPTM_K562_Paclitaxel_30min_R1 1 SILYDER 7 0 A0A024RA52;P25787 A0A024RA52 PSMA2 Proteasome subunit alpha type;Proteasome subunit alpha type-2 0 134.06 0.00038085 17328000 4146.1 3781 4380.1 4487 3518.4 3356.2 3702.8 4306.5 3746.4 4246.5 FALSE TRUE 4204.158192 4193.822367 3274.289583 4199.223903 3997.665647 3951.374947 4405.38697 3940.635945 4106.258459 3381.060969 1.243443472 1.240386496 0.968420745 1.241984082 1.182370174 1.168678998 1.302959932 1.165502776 1.214488144 1 11.72326032 -11.1186721 4.991434246 0.999992426 1.189853166 0.316209679 0.084659785 7.12E-06 1.26E-06 0.081785469 0.019835099 7.61E-12 11.1186721 0.18986074 SIMVQS(ph)PEK ddPTM_K562_Paclitaxel_30min_R1 1 SIMVQSPEK 9 0 Q14191 Q14191 WRN Werner syndrome ATP-dependent helicase 1 SIMVQS(1)PEK 84.479 0.026921 9289400 2525.2 2071.7 4303.3 2828.7 1907 1588.8 1874.5 2682.8 1658.9 3401.3 TRUE FALSE 2560.560591 2297.895212 3216.878692 2647.279843 2166.765686 1870.551372 2230.176589 2454.879394 1818.244757 2708.113193 0.945514611 0.848522587 1.187867147 0.977536629 0.800101595 0.690721266 0.823516755 0.906490689 0.671406484 1 11.40307233 -6.743126213 6.520524211 0.804573365 0.995030933 0.33939451 0.118711294 0.176613053 28.349779 0.035504204 0.044349294 1.81E-07 6.743126213 0.190457568 SINGS(ph)LY(ph)IFR ddPTM_K562_Paclitaxel_30min_R1 1 SINGSLYIFR 10 0 Q8TCU6-3;Q8TCU6 Q8TCU6-3 PREX1 "Phosphatidylinositol 3,4,5-trisphosphate-dependent Rac exchanger 1 protein" 2 S(0.387)INGS(0.866)LY(0.747)IFR 105.14 0.02802 33779000 0 0 0 0 113.69 54.541 44.353 137.96 122.28 0 TRUE FALSE 0 0 0 0 129.1765028 64.21308056 52.76875021 126.2394369 134.0255404 0 0 SIPAGAEPGEKGS(ph)AR ddPTM_K562_Paclitaxel_30min_R1 2 SIPAGAEPGEKGSAR 15 1 A6NGP5;Q9H910;Q9H910-3;H3BU16;Q9H910-2 A6NGP5 HN1L Hematological and neurological expressed 1-like protein 1 SIPAGAEPGEKGS(1)AR;SIPAGAEPGEKGS(1)AR 86.467 0.012351 34130000 4940.3 3800 5910.7 4121 2907.6 2958 2663.3 5227.7 4460.5 5875.6 TRUE FALSE 5009.479442 4214.896851 4418.470682 3856.697505 3303.664346 3482.559768 3168.647272 4783.574255 4888.950955 4678.149495 1.070825002 0.900975237 0.944491126 0.82440664 0.706190418 0.744431056 0.677329204 1.022535569 1.045060864 1 12.19172225 -10.99505442 9.609427706 0.999998784 0.871442893 0.059867407 0.135006128 0 0 0.142274995 0.034506755 1.01E-11 10.99505442 -0.128555891 SIPEQANAAVPDSVALESDSVGTY(ph)LPGAS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SIPEQANAAVPDSVALESDSVGTYLPGASR 30 0 Q5THJ4-2;Q5THJ4;A0A2R8YD87;H3BLS7 Q5THJ4-2 VPS13D Vacuolar protein sorting-associated protein 13D 2 SIPEQANAAVPDSVALES(0.006)DS(0.148)VGT(0.467)Y(0.618)LPGAS(0.761)R 52.347 0.0053146 52018000 247.45 176.24 282.55 364.4 177.29 45.929 202.37 291.45 246.24 341.01 TRUE FALSE 250.9150634 195.4824792 211.216758 341.029015 201.4398995 54.07386327 240.7686511 266.6895033 269.8924522 271.5119748 0.924139952 0.719977376 0.777927965 1.256036737 0.741919025 0.1991583 0.886769916 0.982238457 0.994035171 1 8.084872018 -7.995798108 24.99877798 0.979783023 0.768302858 0.144906845 0.24286561 265.2367097 1577994.036 0.110556644 0.074195038 1.01E-08 7.995798108 -0.211480166 SIPMQVDGEPCR ddPTM_K562_Paclitaxel_30min_R1 1 SIPMQVDGEPCR 12 0 E9PFX6;A0A087WV00;E7EM72;E7EWQ4;O75912 E9PFX6 DGKI Diacylglycerol kinase;Diacylglycerol kinase iota 0 66.267 0.028929 0 1401.9 1476.6 1477.9 1516.7 1505.8 1808.1 1283.8 1776.9 1647.8 2016.9 FALSE TRUE 1421.530925 1637.820182 1104.785867 1419.42565 1710.915453 2128.741148 1527.394348 1625.941254 1806.078553 1605.854673 0.885217666 1.019905605 0.687973753 0.883906666 1.065423592 1.325612575 0.95114108 1.012508343 1.124683686 1 10.64912562 -6.764669409 5.407624697 1.087611924 0.865462578 0.42242597 0.120790049 0.170267896 15.27709231 0.038081762 0.046186192 1.72E-07 6.764669409 -0.222149345 SIQDLTVTGTEPGQVSS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SIQDLTVTGTEPGQVSSR 18 0 Q9UG54;O43318-4;O43318-3;O43318-2;O43318 Q9UG54 DKFZp586F0420;MAP3K7 Mitogen-activated protein kinase kinase kinase 7 1 SIQDLTVTGTEPGQVS(0.022)S(0.977)R 155.49 2.30E-09 34712000 1582.4 1235.5 1569.8 1427.1 1263.3 1067.9 1031.6 1178.4 1034.6 1366.9 TRUE FALSE 1604.558482 1370.396068 1173.484575 1335.572193 1435.382848 1257.277071 1227.340715 1078.287565 1133.977953 1088.32503 1.474337572 1.259179042 1.078248265 1.227181363 1.318891699 1.155240426 1.12773361 0.990777144 1.041947876 1 10.08789377 -2 0.172682559 0.952867341 2.727464098 0.639587189 0.087778313 43.4023654 0.47443095 0.243541306 19.98892129 0.01 2 1.774596757 SIQPQVS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 SIQPQVSPR 9 0 A0A2R8YCL1;Q13322-3;Q13322-2;Q13322-4;Q13322 A0A2R8YCL1 GRB10 Growth factor receptor-bound protein 10 1 SIQPQVS(1)PR;SIQPQVS(1)PR;SIQPQVS(1)PR;SIQPQVS(1)PR 119.03 0.0031012 590361000 8013 7270.7 9471.7 8013.6 7516.4 7395.5 6915.7 8161.7 7197.7 8701.7 TRUE FALSE 8125.206722 8064.539614 7080.45219 7499.643564 8540.260934 8706.988087 8227.917973 7468.312641 7889.071245 6928.288764 1.172758094 1.164001659 1.021962628 1.082466944 1.232665269 1.256729964 1.187583003 1.077944771 1.138675294 1 12.75828335 -9.333227002 1.197546778 1.001094994 1.153669794 0.308091533 0.067779155 1.653269096 3.969031122 0.072957973 0.022382268 4.64E-10 9.333227002 0.1525748 SIS(ph)ADDDLQESSR ddPTM_K562_Paclitaxel_30min_R1 2 SISADDDLQESSR 13 0 A2ABK4;A0A0A0MT02;P18615;P18615-3;A0A0G2JI50;E9PD43;A0A0A0MSN9;P18615-4 A2ABK4 NELFE Negative elongation factor E 1 S(0.025)IS(0.975)ADDDLQESSR;S(0.349)IS(0.651)ADDDLQESSR 217.19 4.23E-16 421180000 4055.7 3245.5 4309.5 3786.5 2348.8 2851.5 2680.2 3310 2293 4142.8 TRUE FALSE 4112.492313 3599.854666 3221.513426 3543.650838 2668.746326 3357.173488 3188.753958 3028.79484 2513.252895 3298.495086 1.246778366 1.091362749 0.976661581 1.074323516 0.809079976 1.017789447 0.966729941 0.918235365 0.761939257 1 11.68759224 -2 0.492571985 0.90959613 11.29605912 0.586981922 0.084935867 71.33666793 0.775302278 0.046492283 763.5979578 0.01 2 10.38646299 SIS(ph)ESSR ddPTM_K562_Paclitaxel_30min_R1 1 SISESSR 7 0 Q9H307 Q9H307 PNN Pinin 1 S(0.01)IS(0.914)ES(0.076)SR 85.862 0.027603 9008600 2227.1 2199.5 2491.3 2127.4 1975 1806 1671.6 1998.1 2009.4 2283.1 TRUE FALSE 2258.286271 2439.648848 1862.340503 1990.958086 2244.028437 2126.268743 1988.777374 1828.348933 2202.411848 1817.802967 1.242316308 1.342086515 1.02450075 1.095255164 1.234472865 1.169691535 1.094055522 1.00580149 1.211578971 1 10.82798012 -2 0.200794925 1.043739671 2.106113149 0.298009422 0.092262755 70.48396742 0.852901334 0.174592113 23.59768347 0.01 2 1.062373477 SIS(ph)LGDSEGPIVATLAQPLR ddPTM_K562_Paclitaxel_30min_R1 3 SISLGDSEGPIVATLAQPLR 20 0 O43379;O43379-4 O43379 WDR62 WD repeat-containing protein 62 1 S(0.008)IS(0.992)LGDS(0.001)EGPIVATLAQPLR;S(0.001)IS(0.999)LGDSEGPIVATLAQPLR;SIS(0.98)LGDS(0.02)EGPIVATLAQPLR 185.96 1.71E-16 135372000 2397.34 2149.4 3179.79 2425.72 2013.7 2025.29 2435.29 3056.45 2091.98 3334.56 TRUE FALSE 2430.910156 2384.078761 2377.012687 2270.145176 2288.000032 2384.446745 2897.373564 2796.785495 2292.924026 2654.974842 0.915605722 0.897966611 0.895305165 0.855053367 0.861778423 0.898105213 1.091299819 1.053413182 0.863633052 1 11.37448247 -7.633243162 8.386132554 1.006238101 0.88432442 0.493501753 0.057012789 0.210156424 14.79431193 0.022061865 0.017052754 2.33E-08 7.633243162 -0.121913681 SIS(ph)PEVSASR ddPTM_K562_Paclitaxel_30min_R1 3 SISPEVSASR 10 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 S(0.001)IS(0.997)PEVS(0.002)ASR;S(0.015)IS(0.969)PEVS(0.015)ASR;S(0.001)IS(0.975)PEVS(0.024)ASR 149.94 0.00030785 95438000 4507 4288.9 5547.6 5228.3 4197 3705.9 3876.1 4680.6 4454.69 4905.5 TRUE FALSE 4570.111905 4757.176606 4147.039768 4892.980239 4768.702456 4363.089332 4611.56974 4282.953815 4882.582879 3905.756407 1.170096501 1.217991116 1.061776346 1.25276124 1.220942107 1.117092024 1.180711048 1.096574739 1.250099179 1 11.93138626 -11.56628317 2.806742287 0.989575441 1.172117104 0.417501429 0.061693126 19348366.19 19234634.35 1505029.917 0.015241771 2.71E-12 11.56628317 0.182541663 SIS(ph)PEVSASRR ddPTM_K562_Paclitaxel_30min_R1 4 SISPEVSASRR 11 1 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 S(0.133)IS(0.867)PEVSASRR;S(0.155)IS(0.845)PEVSASRR;S(0.191)IS(0.809)PEVSASRR;S(0.004)IS(0.996)PEVSASRR 92.295 0.0093758 45743000 3552.08 2938.08 3735.19 3802.58 2778.36 3514.04 3163.05 3430.09 3281.91 3193.97 TRUE FALSE 3601.820079 3258.86951 2792.195088 3558.699539 3156.81967 4137.205654 3763.222225 3138.682445 3597.152119 2543.037161 1.41634583 1.281487176 1.097976519 1.399389515 1.241358057 1.626875815 1.479814091 1.234225946 1.414510246 1 11.31233683 -11.30223418 5.180779371 0.999914803 1.351090491 0.363710312 0.140659256 0.000144764 1.95E-05 0.142430212 0.034536056 4.99E-12 11.30223418 0.351175688 SIS(ph)SPSVSSETMDKPVDLSTR ddPTM_K562_Paclitaxel_30min_R1 1 SISSPSVSSETMDKPVDLSTR 21 1 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 S(0.015)IS(0.355)S(0.355)PS(0.03)VS(0.169)S(0.053)ET(0.024)MDKPVDLSTR 74.222 0.0027723 77313000 927.48 914.1 1407.6 1152 767.35 575.62 735.16 1140.7 480.26 1013.7 TRUE FALSE 940.4675815 1013.904529 1052.233971 1078.115876 871.8760613 677.6981249 874.6527722 1043.790415 526.3911189 807.1073836 1.165232286 1.256220114 1.303710005 1.335777491 1.080247906 0.839662898 1.08368823 1.293248502 0.652194652 1 9.656616823 -6.915776681 5.145707798 0.994970063 1.265518238 0.421773256 0.15987566 0.21744674 9.868710486 0.049829766 0.056706353 1.21E-07 6.915776681 0.270548176 SIS(ph)TSGPLDKEDTGR ddPTM_K562_Paclitaxel_30min_R1 1 SISTSGPLDKEDTGR 15 1 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 S(0.022)IS(0.971)T(0.006)SGPLDKEDTGR 108.66 0.0067534 12245000 2655.6 2360.7 4845.6 2852.4 2722.4 2463.6 2418.6 3027.1 2637.2 4094.6 TRUE FALSE 2692.786593 2618.449209 3622.26835 2669.459831 3093.236971 2900.484869 2877.516724 2769.92896 2890.514843 3260.118272 0.825978191 0.80317614 1.111084951 0.818823002 0.948811274 0.889687007 0.88264182 0.849640635 0.886628828 1 11.67070859 SISASKAS(ph)PPGDLQNPK ddPTM_K562_Paclitaxel_30min_R1 1 SISASKASPPGDLQNPK 17 1 O00273 O00273 DFFA DNA fragmentation factor subunit alpha 1 S(0.002)IS(0.023)AS(0.027)KAS(0.948)PPGDLQNPK 79.341 0.012123 18656000 3232.7 2599.3 7173.8 3772.9 3029.8 2629.2 2441.5 3374.3 3022.7 5393 TRUE FALSE 3277.967774 2883.100364 5362.685466 3530.923081 3442.510055 3095.451704 2904.76188 3087.632153 3313.043841 4293.90364 0.763400404 0.671440397 1.248906803 0.82231074 0.801720379 0.720894544 0.676485111 0.719073461 0.77156921 1 12.0680741 -6.704402263 3.747330252 0.757679121 0.893400689 0.071439711 0.162655337 0.505001023 14.36806919 0.050944536 0.065169265 1.98E-07 6.704402263 0.135721568 SISLGDS(ph)EGPIVATLAQPLR ddPTM_K562_Paclitaxel_30min_R1 1 SISLGDSEGPIVATLAQPLR 20 0 O43379;O43379-4 O43379 WDR62 WD repeat-containing protein 62 1 S(0.002)IS(0.188)LGDS(0.81)EGPIVATLAQPLR 149.19 1.61E-12 130910000 1135.5 1019.3 1388.5 1120 806.02 505.2 1027 1116.3 773.4 1396.8 TRUE FALSE 1151.400503 1130.590621 1037.956002 1048.168213 915.81357 594.7901266 1221.867889 1021.463347 847.6885256 1112.131393 1.035309776 1.016598064 0.933303392 0.94248595 0.823476053 0.534820013 1.09867224 0.918473621 0.762219762 1 10.11911153 -6.123829326 1.612270431 0.853477092 1.02868441 0.168223309 0.141993459 0.737611511 3.670448577 0.045836398 0.119247141 7.52E-07 6.123829326 0.175207319 SISSPS(ph)VSSETMDKPVDLSTRK ddPTM_K562_Paclitaxel_30min_R1 1 SISSPSVSSETMDKPVDLSTRK 22 2 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 S(0.002)IS(0.038)S(0.031)PS(0.653)VS(0.125)S(0.125)ET(0.025)MDKPVDLSTRK 80.859 0.0086087 33612000 783.32 865.09 1848.8 885.85 701.11 478.38 683.11 1297.1 953.95 1465.1 TRUE FALSE 794.2888967 959.5434517 1382.047574 829.0355459 796.6130519 563.2139762 812.7265564 1186.903259 1045.58116 1166.511816 0.680909431 0.822574996 1.18476946 0.710696227 0.682901828 0.482818921 0.696715237 1.0174807 0.896331392 1 10.18798521 -8.26308565 24.85025173 0.967679542 0.75645845 0.259783084 0.169734297 225.6210749 3405639.115 0.09713396 0.050517485 5.46E-09 8.26308565 -0.211221093 SIVPS(ph)SPQPQR ddPTM_K562_Paclitaxel_30min_R1 1 SIVPSSPQPQR 11 0 A0A1X7SBY3;H0Y860;Q9P246;Q9P246-2;H7C5K2;H7C5C6;H7C5A5;Q9P246-3 A0A1X7SBY3 STIM2 Stromal interaction molecule 2 1 SIVPS(0.5)S(0.5)PQPQR 132.79 0.00084038 26384000 2843.1 2376.7 3484.9 3123.9 2218 2253.8 2478.2 2868.1 2983 2997.1 TRUE FALSE 2882.912172 2636.196143 2605.093894 2923.547036 2520.129151 2653.479785 2948.425513 2624.437003 3269.530478 2386.289375 1.208115077 1.104726095 1.091692366 1.22514355 1.056086985 1.11196899 1.235569141 1.099798302 1.3701316 1 11.22055329 -7.737504317 24.98056456 1.184691329 1.130493095 0.039904857 0.100661361 680.8224739 710561.1914 0.03602069 0.02788482 1.83E-08 7.737504317 -0.054198234 SIVPSS(ph)PQPQR ddPTM_K562_Paclitaxel_30min_R1 3 SIVPSSPQPQR 11 0 A0A1X7SBY3;H0Y860;Q9P246;Q9P246-2;H7C5K2;H7C5C6;H7C5A5;Q9P246-3 A0A1X7SBY3 STIM2 Stromal interaction molecule 2 1 S(0.101)IVPS(0.084)S(0.815)PQPQR;SIVPS(0.152)S(0.848)PQPQR;SIVPS(0.069)S(0.931)PQPQR 160.52 0.00058445 164259000 8124.7 7657.7 9285.7 8600.4 7198 7105.3 7176.3 7925.3 6971.1 9031.8 TRUE FALSE 8238.470867 8493.793583 6941.410191 8048.808838 8178.489463 8365.325192 8537.965462 7251.996297 7640.705303 7191.114202 1.145645951 1.181151257 0.965276033 1.119271452 1.137304906 1.163286378 1.187293822 1.008466295 1.062520367 1 12.81199961 -8.278178251 24.55525614 1.026619984 1.125537672 0.383589013 0.060765574 803.7180233 1179014.316 0.034787641 0.01679359 5.27E-09 8.278178251 0.098917687 SIYDDIS(ph)SPGLGSTPLTSR ddPTM_K562_Paclitaxel_30min_R1 1 SIYDDISSPGLGSTPLTSR 19 0 Q8NFH5-2;Q8NFH5;C9IYQ7;F8WCF5;F8WEL4 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 SIYDDIS(0.499)S(0.499)PGLGS(0.001)T(0.001)PLTSR 83.792 0.0047765 15306000 634.05 836.94 984.79 867.65 769.65 850.99 626.19 823.29 845.25 945.38 TRUE FALSE 642.9286562 928.3199395 736.1675848 812.0028125 874.4893603 1001.901128 745.0062836 753.3463757 926.4400392 752.7110371 0.854150696 1.233301883 0.97802151 1.078770966 1.161786286 1.331056778 0.989763996 1.000844067 1.230804377 1 9.555952316 -5.242499406 23.74147095 1.111040407 0.854150238 0.301494632 0.117554309 2698.072528 3381960.947 0.029221464 0.921239562 5.72E-06 5.242499406 -0.256890169 SKAPGSPLS(ph)SEGAAGEGVR ddPTM_K562_Paclitaxel_30min_R1 3 SKAPGSPLSSEGAAGEGVR 19 1 Q6JBY9;B7ZKW8 Q6JBY9 RCSD1 CapZ-interacting protein 1 SKAPGS(0.098)PLS(0.451)S(0.451)EGAAGEGVR;SKAPGS(0.044)PLS(0.943)S(0.013)EGAAGEGVR;SKAPGS(0.007)PLS(0.883)S(0.11)EGAAGEGVR 252.44 4.15E-71 201781000 7718.9 5793.2 11484.6 8111.9 6393.8 6105.1 5711.8 7944.9 7654.2 9572.9 TRUE FALSE 7826.988415 6425.721167 8585.17069 7591.639042 7264.743808 7187.753765 6795.584232 7269.931154 8389.42011 7621.937725 1.026902698 0.84305611 1.126376389 0.996024806 0.953136075 0.943034964 0.89158223 0.953816656 1.100693867 1 12.89594211 -8.744233892 24.96543233 1.050346948 0.965166667 0.163996261 0.075439248 365.2773767 530027.6557 0.050921511 0.019146877 1.80E-09 8.744233892 -0.085180281 SKAPGSPLSS(ph)EGAAGEGVR ddPTM_K562_Paclitaxel_30min_R1 1 SKAPGSPLSSEGAAGEGVR 19 1 Q6JBY9;B7ZKW8 Q6JBY9 RCSD1 CapZ-interacting protein 1 SKAPGS(0.133)PLS(0.224)S(0.643)EGAAGEGVR 97.621 0.002879 25542000 2399.9 1822 4307.6 2643.4 2022.5 2037.7 1937.3 2653.3 2430.2 3327.5 TRUE FALSE 2433.506004 2020.932122 3220.093104 2473.864155 2297.998741 2399.057484 2304.892562 2427.885604 2663.631568 2649.353673 0.918528179 0.76280194 1.215425912 0.933761385 0.867380888 0.905525566 0.869982964 0.916406755 1.005389199 1 11.37142473 -8.763699772 24.68754948 1.002694651 0.924143977 0.078211324 0.108432904 148.563274 1622365.672 0.090564899 0.027731146 1.72E-09 8.763699772 -0.078550673 SKDYDVYS(ph)DNDICSQESEDNFAK ddPTM_K562_Paclitaxel_30min_R1 1 SKDYDVYSDNDICSQESEDNFAK 23 1 A0A0C4DGZ1;Q8N5P1 A0A0C4DGZ1 ZC3H8 Zinc finger CCCH domain-containing protein 8 1 SKDY(0.001)DVY(0.041)S(0.958)DNDICSQESEDNFAK 95.996 0.00014046 17941000 1228.4 782.07 3172.3 1654.9 1047.6 913.72 777.18 1492.1 1421.1 2064.7 TRUE FALSE 1245.60139 867.4590474 2371.41363 1548.762121 1190.300856 1075.755413 924.6458478 1365.336792 1557.603005 1643.913007 0.757705174 0.527679411 1.442542045 0.94211927 0.724065599 0.654387068 0.56246641 0.83054078 0.947497221 1 10.68291824 -6.756978714 24.85370112 0.760213269 0.927168541 0.057318864 0.245615831 284.5594307 1585481.573 0.077051694 0.096052565 1.75E-07 6.756978714 0.166955272 SKESVPEFPLS(ph)PPK ddPTM_K562_Paclitaxel_30min_R1 2 SKESVPEFPLSPPK 14 1 A2A2D0;P16949;P16949-2 A2A2D0 STMN1 Stathmin 1 SKESVPEFPLS(1)PPK;SKESVPEFPLS(1)PPK 110.37 7.27E-05 131430000 8898.8 6964.2 20519 10473.1 7384.7 5940.3 5354.9 9447.9 5632 13480.1 TRUE FALSE 9023.410655 7724.574907 15338.72467 9801.402242 8390.621164 6993.728799 6370.964321 8645.241923 6172.978764 10732.84822 0.840728432 0.719713421 1.42913832 0.913215396 0.781770225 0.651619091 0.593594933 0.805493728 0.57514824 1 13.38974536 -6.772087028 3.506076723 0.707957767 0.995561699 0.252035428 0.205142962 0.306016878 7.947375031 0.065330547 0.080217183 1.69E-07 6.772087028 0.287603931 SKESVPEFPLS(ph)PPKKK ddPTM_K562_Paclitaxel_30min_R1 1 SKESVPEFPLSPPKKK 16 3 A2A2D0;P16949;P16949-2 A2A2D0 STMN1 Stathmin 1 SKESVPEFPLS(1)PPKKK 49.988 0.027532 10282000 2055.9 1445.6 5218.5 2342.9 1821.9 1112 928.94 2088.1 1950.2 3098.5 TRUE FALSE 2084.688943 1603.435497 3901.025133 2192.63688 2070.073625 1309.197587 1105.201516 1910.702871 2137.525424 2467.023999 0.845021752 0.649947263 1.581267606 0.888778091 0.839097482 0.530678902 0.447989771 0.774497075 0.866438845 1 11.26855603 -6.831277636 3.064866436 0.694376457 1.014555574 0.175924519 0.26743321 0.402607111 7.649991267 0.089618103 0.107113742 1.47E-07 6.831277636 0.320179117 SKETSSPGTDDVFTPAPSDS(ph)PSSQR ddPTM_K562_Paclitaxel_30min_R1 3 SKETSSPGTDDVFTPAPSDSPSSQR 25 1 P19634 P19634 SLC9A1 Sodium/hydrogen exchanger 1 1 SKETSSPGTDDVFTPAPS(0.021)DS(0.909)PS(0.059)S(0.012)QR;SKETSSPGTDDVFTPAPS(0.019)DS(0.857)PS(0.105)S(0.019)QR;SKETSSPGTDDVFTPAPS(0.016)DS(0.685)PS(0.225)S(0.074)QR 178.63 7.76E-29 74763100 6940.2 6342.3 12332.7 8288.8 5730 5840.8 5898 8593.5 7984.6 10007.1 TRUE FALSE 7037.384212 7034.773762 9219.157356 7757.193467 6510.52301 6876.583871 7017.11471 7863.428536 8751.556506 7967.647527 0.883244921 0.88291729 1.157073945 0.973586424 0.817119857 0.863063263 0.880700945 0.986919729 1.098386503 1 12.95993811 -8.522662493 6.159951163 1.048363901 0.925998045 0.240805305 0.09059458 0.231970174 39.23965935 0.063374063 0.025698375 3.00E-09 8.522662493 -0.122365856 SKHDSSAPDPAPDS(ph)ADEVMPEAVPEVASEPGLESASHPNVDR ddPTM_K562_Paclitaxel_30min_R1 1 SKHDSSAPDPAPDSADEVMPEAVPEVASEPGLESASHPNVDR 42 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 SKHDSSAPDPAPDS(0.999)ADEVMPEAVPEVAS(0.001)EPGLESASHPNVDR 66.044 6.46E-08 18411000 1455.1 1479.8 2871.5 1846 1176 1395.1 1194.1 1653.1 1731.9 2246 TRUE FALSE 1475.475889 1641.369568 2146.554311 1727.605822 1336.19111 1642.501397 1420.674241 1512.658837 1898.256733 1788.263967 0.825088419 0.917856423 1.200356519 0.966079871 0.747200153 0.918489343 0.794443252 0.845881181 1.061508126 1 10.80434399 -5.280100525 6.003850083 0.932392698 0.823092817 0.068293181 0.124621628 0.415937475 63.70060154 0.033165459 0.167811088 5.25E-06 5.280100525 -0.109299882 SKHEEEEWT(ph)DDDLVESL ddPTM_K562_Paclitaxel_30min_R1 1 SKHEEEEWTDDDLVESL 17 1 D6RHI7;P51946 D6RHI7 CCNH Cyclin-H 1 SKHEEEEWT(1)DDDLVESL 105.99 0.0067127 26018000 3870.8 2698 6205.4 4150.5 2850.2 2622.2 2657.9 3645.9 3940.8 4526.4 TRUE FALSE 3925.003142 2992.576764 4638.770023 3884.305507 3238.445494 3087.210352 3162.22265 3336.158038 4319.331448 3603.917195 1.089093597 0.830367792 1.287146672 1.077800986 0.898590428 0.856626328 0.877440429 0.925703299 1.19851018 1 11.81535015 -4.923762863 20.00386844 0.99115668 4.370378647 0.036644072 0.144196572 1496.537718 413863.0778 0.036071244 12202.77566 1.19E-05 4.923762863 3.379221967 SKLNLAQFLNEDLS(ph) ddPTM_K562_Paclitaxel_30min_R1 1 SKLNLAQFLNEDLS 14 1 Q9BPX3 Q9BPX3 NCAPG Condensin complex subunit 3 1 SKLNLAQFLNEDLS(1) 110.6 0.0095896 63411000 5709.3 4793.5 7416.7 5560.9 4374.8 3940.3 4067.5 6440 6379.4 7415.6 TRUE FALSE 5789.247815 5316.870541 5544.262356 5204.248764 4970.721826 4639.05688 4839.286891 5892.881803 6992.169874 5904.296649 0.980514388 0.900508707 0.939021646 0.881434161 0.841882128 0.785708638 0.819621232 0.998066688 1.184251112 1 12.52754949 -8.495359761 5.136029041 1.094064409 0.877861334 0.625839521 0.067204914 0.116038935 8.53332539 0.043682116 0.018523354 3.20E-09 8.495359761 -0.216203076 SKPVLEPLT(ph)PPLGSPRPR ddPTM_K562_Paclitaxel_30min_R1 2 SKPVLEPLTPPLGSPRPR 18 2 Q9H7P9-3;Q9H7P9;H7BXC7;E7ESZ3;Q9H7P9-2 Q9H7P9-3 PLEKHG2 Pleckstrin homology domain-containing family G member 2 1 SKPVLEPLT(0.979)PPLGS(0.021)PRPR;SKPVLEPLT(0.882)PPLGS(0.118)PRPR 122.47 4.70E-05 27155000 2434.7 1907.51 3429.5 2610.4 2275.86 2063.34 2074.5 2596.4 2094.78 3283.6 TRUE FALSE 2468.793312 2115.778393 2563.680309 2442.980628 2585.870663 2429.244378 2468.125545 2375.819614 2295.992979 2614.400518 0.9443057 0.809278601 0.980599679 0.93443243 0.98908742 0.929178357 0.944050282 0.908743552 0.878210115 1 11.35226446 -5.778285966 24.9997133 0.942799908 0.876792089 0.258231117 0.046420023 283.0498653 420036.2537 0.011744647 0.024551849 1.67E-06 5.778285966 -0.066007819 SKQLQQS(ph)PTPTCPTPELGS(ph)PLPSR ddPTM_K562_Paclitaxel_30min_R1 1 SKQLQQSPTPTCPTPELGSPLPSR 24 1 Q8IWY9 Q8IWY9 CDAN1 Codanin-1 2 S(0.005)KQLQQS(0.993)PT(0.004)PT(0.022)CPT(0.025)PELGS(0.809)PLPS(0.141)R 105.04 7.70E-06 25967000 1393.1 1326.4 2007.9 1604.3 1414.2 1205.1 1217.7 1598 1619.5 1664.1 TRUE FALSE 1412.607698 1471.220838 1500.980812 1501.407379 1606.837983 1418.807565 1448.752218 1462.239926 1775.060211 1324.955507 1.066154819 1.110392636 1.132853748 1.133175696 1.212748635 1.07083412 1.093434618 1.103614362 1.339713071 1 10.3717282 -5.33819975 1.75226092 1.138833151 1.04854924 0.058588688 0.085472531 2.380843574 8.321051237 0.02287678 0.340908499 4.59E-06 5.33819975 -0.090283911 SKQLQQS(ph)PTPTCPTPELGSPLPSR ddPTM_K562_Paclitaxel_30min_R1 2 SKQLQQSPTPTCPTPELGSPLPSR 24 1 Q8IWY9 Q8IWY9 CDAN1 Codanin-1 1 S(0.017)KQLQQS(0.909)PT(0.069)PT(0.004)CPT(0.002)PELGSPLPSR;S(0.007)KQLQQS(0.965)PT(0.021)PT(0.007)CPTPELGSPLPSR 76.208 0.00025938 40357000 3796.1 2934 6114.4 3809.1 3164.6 3030 2788.3 3637.7 4639.9 4509.6 TRUE FALSE 3849.257112 3254.344042 4570.744098 3564.801375 3595.672097 3567.327957 3317.365369 3328.654679 5085.583127 3590.541045 1.072054898 0.906365921 1.272995919 0.992831256 1.001429047 0.993534933 0.923917963 0.927062144 1.41638351 1 11.80998554 -8.73578927 24.99994176 1.208192502 1.01205504 0.250754831 0.136149001 258.09927 251558.4083 0.088155748 0.033294606 1.84E-09 8.73578927 -0.196137462 SKS(ph)DSYTLDPDTLR ddPTM_K562_Paclitaxel_30min_R1 2 SKSDSYTLDPDTLR 14 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 1 S(0.01)KS(0.968)DS(0.01)YT(0.012)LDPDTLR;S(0.008)KS(0.914)DS(0.004)YT(0.074)LDPDTLR 181.81 7.96E-06 41987000 2640.87 2110.47 4543 2951.52 2234.59 1889.73 1835.71 2309.58 1991.53 3585.7 TRUE FALSE 2677.850328 2340.898252 3396.063463 2762.222718 2538.97899 2224.847082 2184.026389 2113.366763 2182.825355 2854.932372 0.937973296 0.819948758 1.189542525 0.967526497 0.889330695 0.779299399 0.765001095 0.740251077 0.764580407 1 11.47924086 -6.996394483 2.852087736 0.791402268 0.98190214 0.340282291 0.109232914 0.284262609 4.702317053 0.037519455 0.040879067 1.01E-07 6.996394483 0.190499872 SKS(ph)EEAHAEDSVMDHHFR ddPTM_K562_Paclitaxel_30min_R1 1 SKSEEAHAEDSVMDHHFR 18 1 Q8NC51-4;Q8NC51-3;Q8NC51-2;Q8NC51 Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 S(0.398)KS(0.602)EEAHAEDSVMDHHFR 107.73 0.00038278 85376000 3484.1 2224.3 6143.4 3446.4 2475.8 2285.2 2034.3 3234.1 2319 4333.9 TRUE FALSE 3532.888149 2467.156596 4592.422689 3225.36333 2813.045876 2690.448134 2420.297805 2959.343018 2541.750312 3450.648801 1.02383301 0.714983395 1.330886727 0.934712141 0.815222307 0.779693411 0.701403691 0.857619303 0.736600697 1 11.75265193 -6.66954255 4.281297753 0.800190495 1.011794353 0.256281754 0.157826388 0.289586575 9.663443445 0.04688654 0.060723786 2.14E-07 6.66954255 0.211603857 SKS(ph)PLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK ddPTM_K562_Paclitaxel_30min_R1 1 SKSPLPPEEEAKDEEEDQTLVNLDTYTSDLHFQVSK 36 2 H3BQZ7;Q1KMD3 H3BQZ7 HNRNPUL2-BSCL2;HNRNPUL2 Heterogeneous nuclear ribonucleoprotein U-like protein 2 1 S(0.42)KS(0.522)PLPPEEEAKDEEEDQT(0.054)LVNLDT(0.002)Y(0.001)TSDLHFQVSK 49.744 0.0013597 7818300 528.13 331.02 1379.8 497.89 373.03 174.77 274.71 619.64 436.28 972.48 TRUE FALSE 535.5254494 367.161883 1031.452425 465.9575639 423.8430015 205.7630056 326.8347884 566.9977143 478.1866434 774.2880422 0.691635955 0.474192888 1.332130123 0.601788402 0.547397065 0.26574478 0.422110081 0.732282669 0.617582369 1 9.596726552 -6.493662387 24.99188157 0.560212331 0.825165679 0.127793232 0.270237923 1285.088718 1099274.191 0.076468732 0.113201427 3.21E-07 6.493662387 0.264953348 SKS(ph)QSSGSSATHPISVPGAR ddPTM_K562_Paclitaxel_30min_R1 1 SKSQSSGSSATHPISVPGAR 20 1 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 S(0.046)KS(0.297)QS(0.297)S(0.297)GS(0.035)S(0.014)AT(0.014)HPISVPGAR 57.662 0.026434 16286000 360.87 285.15 344.17 309.41 309.21 294.41 310.65 395.67 355.42 568.5 TRUE FALSE 365.9232934 316.2836413 257.2800269 289.5658275 351.329637 346.6194798 369.5942158 362.0553638 389.5596791 452.6393879 0.808421236 0.698754129 0.568399555 0.639727419 0.776179993 0.765774011 0.816531273 0.799875957 0.860640257 1 8.822218321 -8.628408821 0.486851765 0.999616644 0.675469034 0.678863141 0.064183074 0.572244847 0.349315418 0.077623379 0.045803698 2.35E-09 8.628408821 -0.32414761 SKS(ph)YNTPLLNPVQEHEAEGAAAGGTSIR ddPTM_K562_Paclitaxel_30min_R1 1 SKSYNTPLLNPVQEHEAEGAAAGGTSIR 28 1 P85299-2;P85299-4;P85299-3;P85299;P85299-5 P85299-2 PRR5 Proline-rich protein 5 1 S(0.38)KS(0.498)Y(0.05)NT(0.073)PLLNPVQEHEAEGAAAGGTSIR 70.823 0.00029743 12581000 961.24 672.6 1155.3 888.04 702.12 809.44 711.65 1261.2 950.17 1190.8 TRUE FALSE 974.7003257 746.0367426 863.6302264 831.0850891 797.760631 952.9828189 846.6818724 1154.053188 1041.438074 948.1143064 1.028040943 0.786863712 0.910892516 0.876566342 0.841418198 1.005134943 0.893016661 1.217208917 1.098430924 1 9.888917193 -8.246003233 24.91017625 1.118364938 0.901795206 0.547172728 0.082731978 489.073161 789246.7614 0.037324162 0.021449541 5.68E-09 8.246003233 -0.216569732 SKSEEAHAEDSVMDHHFR ddPTM_K562_Paclitaxel_30min_R1 4 SKSEEAHAEDSVMDHHFR 18 1 Q8NC51-4;Q8NC51-3;Q8NC51-2;Q8NC51 Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 0 ;;; 137.27 1.74E-09 266894000 18218.1 16213 31324.5 22267.8 17698.4 15141.6 15231.5 20400.6 19878.1 25399.6 FALSE TRUE 18473.20961 17983.19017 23416.24256 20839.64297 20109.22172 17826.75016 18121.59761 18667.44169 21787.48032 20223.14758 0.913468565 0.889237944 1.157893076 1.030484641 0.994366561 0.881502253 0.896081955 0.923073009 1.077353574 1 14.30371994 -7.031763574 23.81608682 0.946058662 1.002827203 0.048893787 0.085463096 1026.914679 769970.1999 0.029836692 0.029873977 9.29E-08 7.031763574 0.056768541 SKTPS(ph)SPCPASK ddPTM_K562_Paclitaxel_30min_R1 1 SKTPSSPCPASK 12 1 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 SKT(0.001)PS(0.542)S(0.457)PCPASK 105.53 0.0052648 22310000 2368.7 1664.5 4562.5 2690.2 1762.6 1561.7 1504.7 2469.6 2406.5 3663 TRUE FALSE 2401.869108 1846.235739 3410.640447 2517.662613 2002.695961 1838.645568 1790.20897 2259.792065 2637.655078 2916.478589 0.823551085 0.633035931 1.169437849 0.863254276 0.686682895 0.630433419 0.613825514 0.774835815 0.904397203 1 11.51001177 -4.906391009 18.89552921 0.794787251 2.512911363 0 0.172390502 4216.5692 890037.395 0.04344995 14162.76708 1.24E-05 4.906391009 1.718124112 SKTPSS(ph)PCPASK ddPTM_K562_Paclitaxel_30min_R1 1 SKTPSSPCPASK 12 1 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 SKT(0.001)PS(0.381)S(0.618)PCPASK 92.952 0.0108 18772000 1829.1 1561.4 4079.2 2299.9 1882.7 1793.5 1300.9 2508.7 2125 3271.4 TRUE FALSE 1854.713043 1731.878932 3049.355509 2152.394708 2139.155614 2111.552043 1547.738984 2295.570276 2329.115745 2604.686884 0.712067563 0.664908685 1.170718649 0.826354492 0.821271696 0.810674041 0.594213068 0.88132293 0.894201817 1 11.34689424 -8.930574292 2.272993093 0.994121682 0.809685979 0.148035733 0.145472382 0.586425645 6.653693612 0.144189432 0.039980332 1.17E-09 8.930574292 -0.184435703 SLAAAAPNGNSSSNS(ph)WEEGSSGSSSDEEHGGGGMR ddPTM_K562_Paclitaxel_30min_R1 1 SLAAAAPNGNSSSNSWEEGSSGSSSDEEHGGGGMR 35 0 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 1 SLAAAAPNGNS(0.053)S(0.185)S(0.185)NS(0.509)WEEGS(0.008)S(0.004)GS(0.011)S(0.011)S(0.035)DEEHGGGGMR 89.145 5.80E-10 15420000 1185.9 1149.1 1137 1213 988.08 1199.4 882.15 837.91 842.5 1244 TRUE FALSE 1202.506259 1274.562624 849.9502878 1135.203609 1122.673224 1412.09675 1049.533357 766.7243154 923.4258894 990.4721172 1.214073812 1.286823326 0.858126416 1.146123742 1.133472821 1.425680466 1.059629382 0.774099848 0.932308819 1 9.951972552 -8.006783336 24.93758626 0.895295486 1.170948246 0.422895055 0.143900979 293.8877932 1080418.954 0.064321099 0.041543978 9.85E-09 8.006783336 0.27565276 SLAAAAPNGNSSSNSWEEGSSGSS(ph)SDEEHGGGGMR ddPTM_K562_Paclitaxel_30min_R1 1 SLAAAAPNGNSSSNSWEEGSSGSSSDEEHGGGGMR 35 0 Q9UKL0 Q9UKL0 RCOR1 REST corepressor 1 1 SLAAAAPNGNSSSNSWEEGS(0.001)S(0.004)GS(0.129)S(0.5)S(0.366)DEEHGGGGMR 139.69 8.08E-32 19148000 753.25 739.79 901.55 882.54 689.68 664.44 652.54 733.86 686.8 740.62 TRUE FALSE 763.797824 820.562774 673.9425523 825.9378345 783.6260924 782.2691048 776.3560585 671.5140124 752.7702087 589.6812375 1.295272387 1.391536176 1.142892989 1.400651372 1.328897788 1.326596566 1.316569036 1.138774595 1.27657141 1 9.203791481 -9.399021146 0.622289219 0.995391502 1.318518157 0.568171632 0.079663671 1.023245658 0.751827059 0.091365896 0.032463506 3.99E-10 9.399021146 0.323126655 SLAALDALNT(ph)DDENDEEEYEAWK ddPTM_K562_Paclitaxel_30min_R1 3 SLAALDALNTDDENDEEEYEAWK 23 0 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 1 SLAALDALNT(1)DDENDEEEYEAWK;SLAALDALNT(0.999)DDENDEEEY(0.001)EAWK;SLAALDALNT(1)DDENDEEEYEAWK 139.41 7.17E-17 37421800 16202.4 13633.8 26216.8 16734.6 13854.7 13551.9 12330 18743.5 14559.8 21710 TRUE FALSE 16429.28359 15122.38439 19598.04459 15661.31766 15741.9447 15955.13919 14669.55313 17151.12268 15958.33384 17285.49008 0.95046675 0.874860031 1.133785881 0.906038393 0.910702828 0.923036553 0.848662842 0.992226578 0.923221371 1 14.07727389 -4.895681208 19.99854497 0.943452462 1.808426535 0 0.076675811 17317.55484 2982785.554 0.018332197 69470.07527 1.27E-05 4.895681208 0.864974074 SLAALDALNT(ph)DDENDEEEYEAWKVR ddPTM_K562_Paclitaxel_30min_R1 3 SLAALDALNTDDENDEEEYEAWKVR 25 1 P55081 P55081 MFAP1 Microfibrillar-associated protein 1 1 SLAALDALNT(1)DDENDEEEYEAWKVR;SLAALDALNT(1)DDENDEEEYEAWKVR;SLAALDALNT(0.997)DDENDEEEY(0.003)EAWKVR 166.01 2.92E-25 313391000 7050.33 5453.54 10333.55 6117.14 4634.06 4808.41 4436.77 5730.37 12995.7 8003.29 TRUE FALSE 7149.056372 6048.97594 7724.717499 5724.81402 5265.297427 5661.114 5278.623946 5243.539301 14243.99505 6372.215105 1.12191071 0.949273658 1.212249959 0.898402506 0.82628997 0.888405979 0.828381318 0.822875439 2.23532866 1 12.63757925 -8.728569304 24.99998968 1.617666788 0.94154553 0.443165413 0.302282923 135.1100169 102760.962 0.187931389 0.071020845 1.87E-09 8.728569304 -0.676121258 SLAGSS(ph)GPGASSGTSGDHGELVVR ddPTM_K562_Paclitaxel_30min_R1 1 SLAGSSGPGASSGTSGDHGELVVR 24 0 E9PQ49;E9PI39;E9PK01;A0A087X1X7;E9PRY8;P29692;P29692-2;E9PPR1;E9PL12;E9PMW7;H0YCK7;E9PIZ1 E9PQ49 EEF1D Elongation factor 1-delta 1 SLAGS(0.14)S(0.695)GPGAS(0.109)S(0.038)GT(0.013)S(0.006)GDHGELVVR 109.12 1.59E-06 0 899.29 947.19 1075.3 1073 1088.6 798.09 948.75 880.22 982.37 977.33 TRUE FALSE 911.8828345 1050.607407 803.8272159 1004.182583 1236.88575 939.6200558 1128.77036 805.4398168 1076.731028 778.1496095 1.171860557 1.350135494 1.03299829 1.290474955 1.589521777 1.207505657 1.450582698 1.035070643 1.383706956 1 9.603903749 -11.10723261 0.695063339 0.932679978 1.281286738 0.19877583 0.167156653 82.46603065 19.24698005 11.55635002 0.060165493 7.81E-12 11.10723261 0.34860676 SLAGSSGPGASSGTSGDHGELVVR ddPTM_K562_Paclitaxel_30min_R1 1 SLAGSSGPGASSGTSGDHGELVVR 24 0 E9PQ49;E9PI39;E9PK01;A0A087X1X7;E9PRY8;P29692;P29692-2;E9PPR1;E9PL12;E9PMW7;H0YCK7;E9PIZ1 E9PQ49 EEF1D Elongation factor 1-delta 0 250.38 6.92E-88 12994000 894.04 900.21 1052.8 991.51 887.61 701.45 817.51 986.6 759.16 1206.4 FALSE TRUE 906.5593183 998.4979721 787.0076191 927.9189864 1008.517509 825.8423087 972.6282548 902.7821718 832.08071 960.5350178 0.94380663 1.039522718 0.819342975 0.966043891 1.049953922 0.859773244 1.012590105 0.939874294 0.86626796 1 9.9076944 -10.44715321 6.647380516 0.999999751 0.946430246 0.048413279 0.07367608 99418323.56 0 0.06878506 0.017196265 3.57E-11 10.44715321 -0.053569505 SLAPDRS(ph)DDEHDPLDNTSRPR ddPTM_K562_Paclitaxel_30min_R1 3 SLAPDRSDDEHDPLDNTSRPR 21 2 A0A0D9SFK2;Q92614-3;Q92614-4;Q92614;Q92614-5;Q92614-2 A0A0D9SFK2 MYO18A Unconventional myosin-XVIIIa 1 S(0.088)LAPDRS(0.912)DDEHDPLDNTSRPR;S(0.001)LAPDRS(0.956)DDEHDPLDNT(0.026)S(0.018)RPR;S(0.004)LAPDRS(0.968)DDEHDPLDNT(0.022)S(0.005)RPR 119.69 6.11E-05 865270000 4089.76 4045.64 5751.34 4664.54 3686.75 4200.48 3982.48 4592.47 4468.64 4980.8 TRUE FALSE 4147.029258 4487.356657 4299.343085 4365.377282 4188.947767 4945.37615 4738.13479 4202.311008 4897.872838 3965.710226 1.045721705 1.13153922 1.084129409 1.100780701 1.056291945 1.247034168 1.194775846 1.059661642 1.235055654 1 11.95336355 -7.203917587 24.99999448 1.15400206 1.087324345 0.153128397 0.073718361 498.425509 216624.1996 0.023166209 0.0231662 6.25E-08 7.203917587 -0.066677714 SLAS(ph)PQPCGLASHEEHR ddPTM_K562_Paclitaxel_30min_R1 1 SLASPQPCGLASHEEHR 17 0 Q9C073-2 Q9C073-2 FAM117A Protein FAM117A 1 S(0.255)LAS(0.745)PQPCGLASHEEHR 79.347 0.011599 8244200 1013.5 1040.1 1373.8 1290.2 1021.3 934.17 795.65 1087.6 703.72 1085.3 TRUE FALSE 1027.692127 1153.661635 1026.967199 1207.452347 1160.418351 1099.831933 946.6204339 995.2015914 771.3154503 864.1152643 1.189299818 1.335078413 1.188460894 1.397327876 1.342897642 1.272783827 1.095479357 1.151700048 0.892607135 1 9.755079956 -8.164484404 1.306825339 0.968385881 1.29489481 0.713993273 0.080945528 0.246569757 0.76228832 0.063728355 0.02613188 6.85E-09 8.164484404 0.326508929 SLASEAPSQPSLNGGS(ph)PEGVESQDGVDHFR ddPTM_K562_Paclitaxel_30min_R1 1 SLASEAPSQPSLNGGSPEGVESQDGVDHFR 30 0 P38935 P38935 IGHMBP2 DNA-binding protein SMUBP-2 1 SLASEAPS(0.004)QPS(0.227)LNGGS(0.768)PEGVESQDGVDHFR 93.278 3.21E-07 42363000 1238.9 877.04 1173.8 985.32 931.73 964.53 655.9 1277.1 1053.3 1425.5 TRUE FALSE 1256.248422 972.7981932 877.4596726 922.1259853 1058.6474 1135.575853 780.353601 1168.602384 1154.474171 1134.982318 1.106844048 0.857104272 0.773104267 0.81245846 0.932743519 1.000522947 0.687546924 1.029621665 1.017173707 1 10.14845411 SLATMDS(ph)PPHQK ddPTM_K562_Paclitaxel_30min_R1 1 SLATMDSPPHQK 12 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 SLATMDS(1)PPHQK 87.566 0.015664 12033000 1735.5 1722.8 3176.8 2270.7 1705.3 1569.3 1295.9 2139.8 1225.3 2534.6 TRUE FALSE 1759.802354 1910.90113 2374.77755 2125.067465 1937.590731 1847.593321 1541.79026 1958.010634 1342.99554 2018.047129 0.872032337 0.946906097 1.176770114 1.053031634 0.960131557 0.915535269 0.764001117 0.970250202 0.665492654 1 10.97874415 -7.282705252 2.40738378 0.84773795 1.016799415 0.276455277 0.115626303 0.382157902 4.364126677 0.044523713 0.040561398 5.22E-08 7.282705252 0.169061465 SLATMDS(ph)PPHQKQPQR ddPTM_K562_Paclitaxel_30min_R1 1 SLATMDSPPHQKQPQR 16 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 SLAT(0.013)MDS(0.987)PPHQKQPQR 79.639 0.01372 11657000 3263.3 2622.2 5037.1 3839.2 2808 2265.7 2707.8 3353.8 2913.9 3589.1 TRUE FALSE 3308.996268 2908.500664 3765.421807 3592.970896 3190.49714 2667.490083 3221.590914 3068.873756 3193.793115 2857.63945 1.157947434 1.017798331 1.317668612 1.257321282 1.116479946 0.933459287 1.127360876 1.07391916 1.117633337 1 11.48060819 -6.997776794 24.69684975 1.056018736 1.185092219 0.345703868 0.088816116 78.57923036 872885.8103 0.028866952 0.032519749 1.01E-07 6.997776794 0.129073484 SLAVPTIEELEDEEERNHR ddPTM_K562_Paclitaxel_30min_R1 1 SLAVPTIEELEDEEERNHR 19 1 Q9BVJ6-3;Q9BVJ6;Q9BVJ6-2 Q9BVJ6-3 UTP14A U3 small nucleolar RNA-associated protein 14 homolog A 0 114.54 0.00021051 7236200 2325.3 2448.5 2655.7 2255.9 2077.4 1952.2 2112.8 2350.8 2458.2 2818.1 FALSE TRUE 2357.861374 2715.83551 1985.23569 2111.216671 2360.377051 2298.39526 2513.69277 2151.084867 2694.321094 2243.769673 1.050848223 1.210389615 0.884776951 0.940923971 1.051969406 1.024345452 1.120298933 0.95869237 1.200801101 1 11.13170887 SLDGAAAVDS(ph)ADRSPRPTSAPAITQGQVAEGGVLDASAKK ddPTM_K562_Paclitaxel_30min_R1 1 SLDGAAAVDSADRSPRPTSAPAITQGQVAEGGVLDASAKK 40 3 P11171;P11171-7;A0A2R8YCW8;A0A2R8Y5G2;A0A2R8Y5Z6;P11171-2;A0A2U3TZH6;P11171-3;P11171-4;A0A3B3IU06;A0A2R8YD30;P11171-5;A0A2R8Y570;A0A2R8Y6G5;A0A2R8Y420;A0A3B3IUD6;A0A2R8YFR9;Q4VB86;A0A2R8Y7N0;A0A2R8Y7Y3;A0A2R8Y4N6;P11171-6;A0A3B3ITP0 P11171 EPB41 Protein 4.1 1 S(0.097)LDGAAAVDS(0.393)ADRS(0.353)PRPT(0.064)S(0.064)APAIT(0.029)QGQVAEGGVLDASAKK 40.594 0.018913 22025000 346.14 268.09 492.58 285.11 250.66 129.63 154.05 474.07 315.86 372.74 TRUE FALSE 350.9870279 297.3609728 368.2220868 266.8243207 284.8041357 152.6180604 183.2801833 433.7947944 346.1997643 296.7753834 1.182668939 1.001973174 1.240743362 0.899078346 0.959662262 0.514254446 0.617572055 1.461693991 1.166538007 1 8.21322762 -11.43194726 15.91904402 1.000000105 0.994926617 0 0.269614099 0 0 0.28243699 0.068501032 3.70E-12 11.43194726 -0.005073488 SLDGAAAVDSADRS(ph)PRPTSAPAITQGQVAEGGVLDASAK ddPTM_K562_Paclitaxel_30min_R1 3 SLDGAAAVDSADRSPRPTSAPAITQGQVAEGGVLDASAK 39 2 P11171;P11171-7;A0A2R8YCW8;A0A2R8Y5G2;A0A2R8Y5Z6;P11171-2;A0A2U3TZH6;P11171-3;P11171-4;A0A3B3IU06;A0A2R8YD30;P11171-5;A0A2R8Y570;A0A2R8Y6G5;A0A2R8Y420;A0A3B3IUD6;A0A2R8YFR9;Q4VB86;A0A2R8Y7N0;A0A2R8Y7Y3;A0A2R8Y4N6;P11171-6;A0A3B3ITP0 P11171 EPB41 Protein 4.1 1 S(0.021)LDGAAAVDS(0.045)ADRS(0.599)PRPT(0.148)S(0.148)APAIT(0.04)QGQVAEGGVLDASAK;S(0.257)LDGAAAVDS(0.176)ADRS(0.445)PRPT(0.05)S(0.05)APAIT(0.021)QGQVAEGGVLDASAK;S(0.18)LDGAAAVDS(0.13)ADRS(0.474)PRPT(0.103)S(0.103)APAIT(0.011)QGQVAEGGVLDASAK 57.14 8.61E-05 454370000 4866.69 4018.59 7375.4 5144.75 4009 3528.88 3567.62 4957.04 4208.22 6385.7 TRUE FALSE 4934.838675 4457.353246 5513.389052 4814.788762 4555.093673 4154.67732 4244.557271 4535.908511 4612.438334 5084.290835 0.970605112 0.876691242 1.084396867 0.946993183 0.895915246 0.81715965 0.834837622 0.892141826 0.907194038 1 12.31183084 -6.733590562 3.903864707 0.878325811 0.973540727 0.248897977 0.065930746 0.27481556 9.022561043 0.020320737 0.025521124 1.85E-07 6.733590562 0.095214917 SLDGAAAVDSADRSPRPTS(ph)APAITQGQVAEGGVLDASAKK ddPTM_K562_Paclitaxel_30min_R1 1 SLDGAAAVDSADRSPRPTSAPAITQGQVAEGGVLDASAKK 40 3 P11171;P11171-7;A0A2R8YCW8;A0A2R8Y5G2;A0A2R8Y5Z6;P11171-2;A0A2U3TZH6;P11171-3;P11171-4;A0A3B3IU06;A0A2R8YD30;P11171-5;A0A2R8Y570;A0A2R8Y6G5;A0A2R8Y420;A0A3B3IUD6;A0A2R8YFR9;Q4VB86;A0A2R8Y7N0;A0A2R8Y7Y3;A0A2R8Y4N6;P11171-6;A0A3B3ITP0 P11171 EPB41 Protein 4.1 1 S(0.001)LDGAAAVDS(0.05)ADRS(0.17)PRPT(0.17)S(0.563)APAIT(0.045)QGQVAEGGVLDASAKK 69.418 5.65E-07 31559000 574.76 454.81 1705.5 785.03 486.44 400.68 451.69 882.15 832.55 1079.2 TRUE FALSE 582.8084133 504.4676939 1274.925432 734.6816895 552.7013635 471.7349722 537.3958195 807.2058513 912.5201474 859.2584476 0.678269053 0.587096578 1.483750826 0.855018291 0.643230643 0.549002426 0.625418139 0.93942149 1.061985657 1 9.74694832 -8.489134883 7.998778527 1.021642972 0.783634146 0.147601714 0.254340916 0.562151983 122.6922183 0.156903924 0.072353528 3.24E-09 8.489134883 -0.238008826 SLDLFNCEVTNLNDYR ddPTM_K562_Paclitaxel_30min_R1 1 SLDLFNCEVTNLNDYR 16 0 H0YN26;Q92688-2;P39687;Q92688 H0YN26 ANP32A;ANP32B Acidic leucine-rich nuclear phosphoprotein 32 family member B;Acidic leucine-rich nuclear phosphoprotein 32 family member A 0 198.85 3.25E-12 9515000 755.8 754.73 858.33 917.06 706.71 764.22 744.84 896.02 522.02 880.77 FALSE TRUE 766.3835318 837.1339737 641.6339758 858.2438762 802.9758667 899.7436868 886.1695017 819.8975082 572.1623534 701.2685905 1.09285307 1.193742291 0.914961806 1.223844741 1.145033269 1.283022937 1.263666324 1.169163312 0.815896165 1 9.453823302 -8.749270504 24.96437149 0.907948103 1.162771191 0.475187174 0.106268608 165.8228679 340189.2291 0.074828336 0.027817075 1.78E-09 8.749270504 0.254823088 SLDLLAALPT(ph)PPHNQTEDVR ddPTM_K562_Paclitaxel_30min_R1 1 SLDLLAALPTPPHNQTEDVR 20 0 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 SLDLLAALPT(1)PPHNQTEDVR 117.43 6.06E-05 4034600 1672.8 1988.8 1808.6 1961.2 1662.4 1645.3 2015 2455 1062.8 2554.4 TRUE FALSE 1696.224361 2205.94391 1351.996562 1835.41741 1888.847025 1937.070854 2397.335731 2246.432426 1164.886689 2033.811878 0.834012418 1.084635179 0.664759891 0.902451908 0.928722585 0.952433642 1.178740156 1.104542879 0.572760294 1 10.98997052 -6.976866306 2.570263959 0.980397242 0.872373017 0.050854296 0.176713172 0.872101806 11.65877682 0.061845902 0.068378661 1.05E-07 6.976866306 -0.108024225 SLDLTRIVRRLQNGEQDEEGADEAAEAAG ddPTM_K562_Paclitaxel_30min_R1 1 SLDLTRIVRRLQNGEQDEEGADEAAEAAG 29 3 A0A0A0MTF5;P43080 A0A0A0MTF5 GUCA1A Guanylyl cyclase-activating protein 1 0 34.715 0.028213 1055200000 2888.1 3318.4 2358.4 3210.5 3301.2 2917.4 2946.1 3283.1 2787.8 2862 FALSE TRUE 2928.542311 3680.714134 1762.992752 3004.5929 3750.87933 3434.759928 3505.107095 3004.180163 3055.580646 2278.722829 1.285168285 1.615253109 0.773675819 1.318542502 1.646044566 1.507317996 1.53818931 1.318361375 1.340918082 1 11.15400974 -6.525821979 24.98487449 1.426406813 1.227480258 0.07229774 0.250543761 198.3922578 1684119.859 0.073341516 0.095208172 2.98E-07 6.525821979 -0.198926555 SLDNNYST(ph)PNER ddPTM_K562_Paclitaxel_30min_R1 2 SLDNNYSTPNER 12 0 O60716;O60716-21;O60716-2;O60716-10;O60716-9;O60716-17;O60716-5;O60716-3;A0A669KB05;O60716-11;C9JZR2;O60716-18;O60716-19;O60716-13;O60716-25;O60716-27;O60716-29;O60716-26;H0YC95 O60716 CTNND1 Catenin delta-1 1 SLDNNYS(0.185)T(0.815)PNER;SLDNNYS(0.009)T(0.991)PNER 166.62 0.0019447 27047000 5366.7 4926.1 6063.5 4943.1 4403.5 4259.4 4499.4 4978.7 3130.4 6075.9 TRUE FALSE 5441.850358 5463.948257 4532.694433 4626.07169 5003.331252 5014.744785 5353.137662 4555.728359 3431.088907 4837.628245 1.124900485 1.129468405 0.936966258 0.956268538 1.034252944 1.036612268 1.106562429 0.941727667 0.709250222 1 12.24008419 -8.522638344 24.99818743 0.844913011 1.039891167 0.430098526 0.089320161 8.131360536 846096.8244 0.058536706 0.022663722 3.00E-09 8.522638344 0.194978156 SLDS(ph)DES(ph)EDEEDDYQQK ddPTM_K562_Paclitaxel_30min_R1 2 SLDSDESEDEEDDYQQK 17 0 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 2 S(0.072)LDS(0.929)DES(1)EDEEDDYQQK;S(0.073)LDS(0.927)DES(0.66)EDEEDDY(0.34)QQK 153.36 2.86E-07 47742000 7384.7 6177.5 12538.4 8013.9 6494.2 5990.1 4536.6 7643.4 5908.1 9353.9 TRUE FALSE 7488.108584 6851.980341 9372.925847 7499.924323 7378.819988 7052.36013 5397.396167 6994.045461 6475.599403 7447.570046 1.00544319 0.920028989 1.258521342 1.007029713 0.990768793 0.946934381 0.724719087 0.939104355 0.869491574 1 12.86255407 -7.190765809 2.198766127 0.876982456 1.050612622 0.324495326 0.104385833 0.35994487 3.417019973 0.040213204 0.038840986 6.45E-08 7.190765809 0.173630166 SLDS(ph)DES(ph)EDEEDDYQQKR ddPTM_K562_Paclitaxel_30min_R1 1 SLDSDESEDEEDDYQQKR 18 1 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 2 S(0.084)LDS(0.916)DES(1)EDEEDDYQQKR 99.343 0.0026652 107220000 4707.5 3856.6 8211.3 5374.1 4096.9 3310.2 3400.8 5152.7 4320.6 6289.9 TRUE FALSE 4773.419524 4277.67663 6138.255759 5029.42928 4654.967141 3897.217492 4046.084047 4714.945973 4735.612935 5008.014927 0.95315601 0.85416611 1.225686394 1.004276016 0.929503448 0.778196062 0.807921723 0.941480016 0.945606793 1 12.29002315 -6.867290623 4.106680909 0.882970595 1.013621091 0.202083712 0.105879842 0.341296251 10.49802788 0.035251283 0.040767206 1.36E-07 6.867290623 0.130650496 SLDS(ph)DESEDEEDDYQQKR ddPTM_K562_Paclitaxel_30min_R1 1 SLDSDESEDEEDDYQQKR 18 1 Q13442 Q13442 PDAP1 28 kDa heat- and acid-stable phosphoprotein 1 S(0.007)LDS(0.951)DES(0.042)EDEEDDYQQKR 117.29 0.00012179 13932000 1158.5 985.63 2589 1710 1358 1046.9 1059.5 1485.9 1100.1 1735.7 TRUE FALSE 1174.722574 1093.244417 1935.37493 1600.328254 1542.982591 1232.553016 1260.534594 1359.66352 1205.76952 1381.963387 0.850038854 0.791080594 1.400453114 1.158010602 1.116514812 0.891885434 0.912133133 0.983863634 0.872504678 1 10.43250368 -7.263026172 24.92680962 0.929822336 1.072102125 0.141489638 0.160728071 296.9113563 4664121.81 0.059873008 0.055602036 5.46E-08 7.263026172 0.142279789 SLEQYDQVLDGAHGAS(ph)LTDLANLSEGVSLAER ddPTM_K562_Paclitaxel_30min_R1 1 SLEQYDQVLDGAHGASLTDLANLSEGVSLAER 32 0 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2;M0R2S2;M0R3I1 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 SLEQYDQVLDGAHGAS(0.978)LT(0.022)DLANLSEGVSLAER 146.15 1.27E-31 15019000 1411.3 1210.3 1546.6 1329.5 1266.1 1179.3 1801.8 1883.8 1622.6 2228.2 TRUE FALSE 1431.062554 1342.444647 1156.141702 1244.231821 1438.564255 1388.432297 2143.682144 1723.759432 1778.45798 1774.091617 0.806645238 0.756694093 0.651680945 0.701334592 0.810873712 0.782615894 1.20832663 0.97162932 1.002461182 1 10.7928648 -7.645374618 7.103153274 1.042228527 0.744375565 0.790603572 0.074256357 0.101197672 5.891423257 0.029297844 0.022589373 2.26E-08 7.645374618 -0.297852962 SLES(ph)PT(ph)LGDPSY(ph)VQVAPETK ddPTM_K562_Paclitaxel_30min_R1 2 SLESPTLGDPSYVQVAPETK 20 0 A0A0A0MSP7;Q5JV73 A0A0A0MSP7 FRMPD3 FERM and PDZ domain-containing protein 3 3 S(0.557)LES(0.672)PT(0.63)LGDPS(0.173)Y(0.967)VQVAPET(0.001)K;S(0.539)LES(0.694)PT(0.621)LGDPS(0.151)Y(0.995)VQVAPETK 64.619 0.0071679 285669000 4470.8 3449.6 4393.2 4114.7 3861.4 4183.1 2821.3 2676 5453.1 2478.3 TRUE FALSE 4533.404994 3826.238994 3284.082326 3850.801559 4387.388054 4924.914051 3356.626947 2448.657097 5976.89462 1973.2211 2.29746428 1.939082749 1.664325567 1.951530702 2.223465001 2.495875425 1.701090135 1.240944108 3.029004008 1 10.9463369 -11.45450608 5.767506868 0.999268017 2.02484293 0.31202446 0.469680711 0.00431262 0.000407889 0.443628605 0.107529195 3.51E-12 11.45450608 1.025574913 SLESPT(ph)LGDPS(ph)Y(ph)VQVAPETK ddPTM_K562_Paclitaxel_30min_R1 1 SLESPTLGDPSYVQVAPETK 20 0 A0A0A0MSP7;Q5JV73 A0A0A0MSP7 FRMPD3 FERM and PDZ domain-containing protein 3 3 S(0.277)LES(0.35)PT(0.725)LGDPS(0.653)Y(0.995)VQVAPETK 63.979 0.010554 97279000 581.22 352.86 507.73 540.63 312.31 436.21 406.14 300.31 762.37 644.13 TRUE FALSE 589.3588732 391.3864481 379.547282 505.9564116 354.8519095 513.5657188 483.2029448 274.796791 835.5990449 512.8559524 1.149170387 0.763150835 0.740066056 0.986546825 0.691913407 1.001383949 0.942180631 0.535816714 1.629305541 1 9.002409858 -8.761544078 25 1.314652679 0.851864282 0.416698076 0.219293437 2.473619423 589292.1362 0.160018692 0.051346576 1.73E-09 8.761544078 -0.462788397 SLGAVEPICSVNT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 SLGAVEPICSVNTPR 15 0 C9JBA9;F8WF66;E9PE54;C9IYI6;E7EUM0;H7C5I3;J3KR55;P35236;P35236-2;P35236-3 C9JBA9 PTPN7 Tyrosine-protein phosphatase non-receptor type 7 1 SLGAVEPICSVNT(1)PR;SLGAVEPICSVNT(1)PR 154.47 2.95E-05 83569000 3391.6 2519.5 2869 2492.6 2041.27 2299 2348.79 2962.2 2277.9 3599 TRUE FALSE 3439.092864 2794.58753 2144.685467 2332.735792 2319.325533 2706.69537 2794.460641 2710.542621 2496.702473 2865.521824 1.200162859 0.975245593 0.748444995 0.814070154 0.809390287 0.944573288 0.975201311 0.945915888 0.871290685 1 11.48458217 -5.339664925 3.51788491 0.885257184 1.214810719 0.594766848 0.077132488 0.178508269 3.672926447 0.021179531 0.134238209 4.57E-06 5.339664925 0.329553535 SLGGES(ph)SGGTTPVGSFHTEAAR ddPTM_K562_Paclitaxel_30min_R1 1 SLGGESSGGTTPVGSFHTEAAR 22 0 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 S(0.014)LGGES(0.905)S(0.08)GGTT(0.001)PVGSFHTEAAR 109.5 5.01E-05 22952000 603.73 823.79 842.08 815.46 794.58 661.69 668.94 558.36 727.13 841.91 TRUE FALSE 612.1840827 913.7341781 629.4864893 763.1600455 902.8152484 779.0314309 795.8678729 510.9238328 796.9740854 670.3282799 0.913260116 1.36311447 0.939071957 1.13848702 1.346825541 1.162164054 1.187280765 0.76219943 1.18893102 1 9.388723989 SLGGESSGGTT(ph)PVGSFHTEAAR ddPTM_K562_Paclitaxel_30min_R1 1 SLGGESSGGTTPVGSFHTEAAR 22 0 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 S(0.008)LGGES(0.101)S(0.028)GGT(0.003)T(0.86)PVGS(0.001)FHTEAAR 65.149 0.010771 24272000 776.99 822.88 843.82 749.52 713.12 761.74 809.35 1095.7 765.45 1160.2 TRUE FALSE 787.8702572 912.7248212 630.7872048 701.4491419 810.2590172 896.8238936 962.9199374 1002.613446 838.9748926 923.7506032 0.852903646 0.988064114 0.682854444 0.759349049 0.877140447 0.970850672 1.042402499 1.08537244 0.908226625 1 9.851359591 -7.245549517 2.755635015 1.014439216 0.823062915 0.513898146 0.083771268 0.237020171 3.595116847 0.0327368 0.030700628 5.68E-08 7.245549517 -0.191376301 SLGGQQGS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 SLGGQQGSPK 10 0 A0A3B3IRZ4;Q6DN90-3;A0A2R8Y695;A0A2R8Y7T6;Q6DN90;A0A3B3IU98;A0A0C4DGT3;Q6DN90-2 A0A3B3IRZ4 IQSEC1 IQ motif and SEC7 domain-containing protein 1 1 SLGGQQGS(1)PK 92.781 0.015098 23457000 1988.1 1493.1 2911.7 1970 2046.3 1491.8 1497.7 1866.8 1687.1 2836.5 TRUE FALSE 2015.939534 1656.121707 2176.605324 1843.653017 2325.040704 1756.349784 1781.880756 1708.203688 1849.153493 2258.419743 0.892632798 0.733309967 0.963773599 0.816346484 1.029498928 0.777689705 0.7889945 0.756371216 0.818782026 1 11.14109793 SLGS(ph)PLLHER ddPTM_K562_Paclitaxel_30min_R1 4 SLGSPLLHER 10 0 H7C3L4;E7EQA9;Q92844;E7EV32;E7EMT6;E7ENY2;E7EVA2;E7EW82 H7C3L4 TANK TRAF family member-associated NF-kappa-B activator 1 S(0.007)LGS(0.993)PLLHER;S(0.002)LGS(0.998)PLLHER;S(0.004)LGS(0.996)PLLHER;S(0.001)LGS(0.999)PLLHER 118.37 0.0023677 33897800 7780.5 7137.3 9107 7995.7 6308.4 7185.2 6185.3 7696.3 6826.4 8596.2 TRUE FALSE 7889.451005 7916.574551 6807.825216 7482.891589 7167.710882 8459.394335 7358.928386 7042.451276 7482.106221 6844.289721 1.152705588 1.156668533 0.994672273 1.09330433 1.04725416 1.235978411 1.075192414 1.02895283 1.093189582 1 12.74068512 -14.99999995 0.15630673 0.633874536 1.124410603 0.188814279 0.065333022 247.878645 2.251744685 27.90370928 0.30893909 1.00E-15 14.99999995 0.490536066 SLGSAS(ph)PGPGQPPLSS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 1 SLGSASPGPGQPPLSSPTR 19 0 Q9C0B5-2;Q9C0B5 Q9C0B5-2 ZDHHC5 Palmitoyltransferase ZDHHC5 2 SLGS(0.21)AS(0.79)PGPGQPPLS(0.079)S(0.764)PT(0.157)R 111.35 0.0021447 11167000 951.9 1051.8 1347.9 1109 1099.2 952.72 1113.1 1258.7 902.02 1174.3 TRUE FALSE 965.2295369 1166.639081 1007.605974 1037.873704 1248.92965 1121.671515 1324.304914 1151.765578 988.6630513 934.9770154 1.032356433 1.247773006 1.077679941 1.110052639 1.335786473 1.19967817 1.416403711 1.231865126 1.057419632 1 9.868787089 -5.250697082 23.65653283 1.200045065 1.032356234 0.114380448 0.123271777 1518.031832 3342849.038 0.03084998 0.41294759 5.61E-06 5.250697082 -0.167688831 SLGSAS(ph)PGPGQPPLSSPTR ddPTM_K562_Paclitaxel_30min_R1 2 SLGSASPGPGQPPLSSPTR 19 0 Q9C0B5-2;Q9C0B5 Q9C0B5-2 ZDHHC5 Palmitoyltransferase ZDHHC5 1 S(0.049)LGS(0.326)AS(0.625)PGPGQPPLSSPTR;SLGS(0.002)AS(0.997)PGPGQPPLS(0.001)SPTR 188.1 2.44E-16 182566000 2146.18 1860.56 2419.4 2056.77 1612.48 2005.11 1687.81 2263.62 1940.83 2338.93 TRUE FALSE 2176.233142 2063.702233 1808.592547 1924.857978 1832.127076 2360.688105 2008.063137 2071.311352 2127.255393 1862.254782 1.168601183 1.108173947 0.971184268 1.03361688 0.98382192 1.267650446 1.078296673 1.112259918 1.142300943 1 10.86283475 SLGSASPGPGQPPLS(ph)SPTR ddPTM_K562_Paclitaxel_30min_R1 1 SLGSASPGPGQPPLSSPTR 19 0 Q9C0B5-2;Q9C0B5 Q9C0B5-2 ZDHHC5 Palmitoyltransferase ZDHHC5 1 SLGSASPGPGQPPLS(0.809)S(0.189)PT(0.002)R 248.91 2.16E-70 12415000 1862.6 2168.2 2833.5 2535.8 2241.3 1830.1 1792.3 2283.2 1585 2495.2 TRUE FALSE 1888.682147 2404.931408 2118.147881 2373.165138 2546.603006 2154.642539 2132.379569 2089.227909 1737.246332 1986.67687 0.95067405 1.210529726 1.066176343 1.194540075 1.281840567 1.084546043 1.073339908 1.051619385 0.87444836 1 10.95614152 -8.292504588 1.637162115 0.945077195 1.140291039 0.384223556 0.091955724 0.401697678 1.9407173 0.072613393 0.027585229 5.10E-09 8.292504588 0.195213844 SLGSASPGPGQPPLSS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 1 SLGSASPGPGQPPLSSPTR 19 0 Q9C0B5-2;Q9C0B5 Q9C0B5-2 ZDHHC5 Palmitoyltransferase ZDHHC5 1 SLGSASPGPGQPPLS(0.235)S(0.759)PT(0.005)R 159.4 7.63E-12 14461000 3220.4 2853.5 4024.5 3424.9 2711.9 2831.1 2593.4 2960.8 2205.3 3679 TRUE FALSE 3265.495536 3165.05478 3008.465201 3205.242243 3081.306693 3333.155834 3085.484112 2709.261559 2417.128919 2929.217781 1.114801213 1.080511938 1.027054124 1.094231458 1.05192134 1.137899632 1.053347461 0.92490957 0.825178973 1 11.51629974 -8.250830241 3.847895777 0.902023959 1.081337274 0.701038341 0.049036495 0.11197167 3.79415468 0.025802611 0.012811131 5.61E-09 8.250830241 0.179313314 SLGSVQAPSYGARPVSSAASVYAGAGGS(ph)GSR ddPTM_K562_Paclitaxel_30min_R1 1 SLGSVQAPSYGARPVSSAASVYAGAGGSGSR 31 1 F8VZY9;P05783 F8VZY9 KRT18 "Keratin, type I cytoskeletal 18" 1 SLGSVQAPS(0.003)Y(0.002)GARPVS(0.017)S(0.017)AAS(0.017)VY(0.016)AGAGGS(0.62)GS(0.306)R 48.188 0.0078716 12999000 875.75 1027.2 1377.7 1384.9 1332.1 1034.1 953.32 1481.2 1325 1439.1 TRUE FALSE 888.0132019 1139.35317 1029.882596 1296.078713 1513.554573 1217.483116 1134.207493 1355.362815 1452.27217 1145.81063 0.775008696 0.994364287 0.898824438 1.131145652 1.320946527 1.062551772 0.989873425 1.18288553 1.267462644 1 10.16215291 -6.268699647 6.485427002 1.143020065 0.899055131 0.507896685 0.111199069 0.1245027 28.18624756 0.03182845 0.050560803 5.39E-07 6.268699647 -0.243964933 SLGTADVHFER ddPTM_K562_Paclitaxel_30min_R1 2 SLGTADVHFER 11 0 E9PB61;Q86V81 E9PB61 ALYREF THO complex subunit 4 0 ; 150.09 0.00089272 62796700 7278.5 6974.5 8453.5 7728.6 6410 6598.8 6793 7780.8 6776.2 9012.3 FALSE TRUE 7380.421456 7735.999496 6319.309373 7232.922188 7283.150522 7769.004528 8081.936288 7119.772474 7427.084287 7175.588313 1.028545833 1.078099684 0.880667772 1.007990129 1.01499002 1.082699312 1.126309919 0.992221427 1.03504883 1 12.80888141 -7.042715275 4.828082287 1.051798587 0.997390053 0.131344934 0.058536009 0.415152461 22.47887142 0.020196175 0.020901994 9.06E-08 7.042715275 -0.054408534 SLGVLPFTLNSGS(ph)PEK ddPTM_K562_Paclitaxel_30min_R1 1 SLGVLPFTLNSGSPEK 16 0 P42695 P42695 NCAPD3 Condensin-2 complex subunit D3 1 SLGVLPFTLNS(0.03)GS(0.97)PEK 135.69 2.21E-07 11902000 3036.6 2390.2 4752.5 3326.3 2332.3 2460 2025 3255.1 1879.2 4780.6 TRUE FALSE 3079.121769 2651.170119 3552.672597 3112.966006 2649.998746 2896.24646 2409.233179 2978.558937 2059.705556 3806.311096 0.808951683 0.696519557 0.933363697 0.817843294 0.696211812 0.760906396 0.632957506 0.782531659 0.541129063 1 11.89417776 -6.753328084 24.62165572 0.720880243 0.814279881 0.0815628 0.123308474 327.9129495 995365.7422 0.034485255 0.043717846 1.76E-07 6.753328084 0.093399638 SLHLS(ph)PQEQSASYQDR ddPTM_K562_Paclitaxel_30min_R1 4 SLHLSPQEQSASYQDR 16 0 Q9H410-4;Q9H410;Q5JW53 Q9H410-4 DSN1 Kinetochore-associated protein DSN1 homolog 1 S(0.079)LHLS(0.921)PQEQSASYQDR;S(0.171)LHLS(0.828)PQEQSASYQDR;SLHLS(0.997)PQEQS(0.002)AS(0.001)YQDR;S(0.001)LHLS(0.999)PQEQSASYQDR 216 5.56E-23 129422000 5135.8 5063.6 6491.9 5822.4 5407.8 4721.64 5240.1 5539.5 4458.4 6029.5 TRUE FALSE 5207.717045 5616.460972 4852.939554 5448.977324 6144.433915 5558.956559 6234.38162 5068.884899 4886.649241 4800.68459 1.084786336 1.169929177 1.010884898 1.135041726 1.279907855 1.157950799 1.298644288 1.055867096 1.017906748 1 12.22902444 -8.504115109 23.88840357 1.018264477 1.161416479 0.397213075 0.079067969 442.8775568 563843.4783 0.046729439 0.021785239 3.13E-09 8.504115109 0.143152002 SLHLS(ph)PQEQSASYQDRR ddPTM_K562_Paclitaxel_30min_R1 1 SLHLSPQEQSASYQDRR 17 1 Q9H410-4;Q9H410;Q5JW53 Q9H410-4 DSN1 Kinetochore-associated protein DSN1 homolog 1 SLHLS(0.996)PQEQS(0.004)AS(0.001)YQDRR 103.2 0.0010355 27415000 571.54 462.92 953.11 732.87 718.52 628.84 563.02 659.83 680.26 732.15 TRUE FALSE 579.5433234 513.4631711 712.4855926 685.8669984 816.3945886 740.3559446 669.8501058 603.773323 745.6020125 582.9374281 0.994177583 0.880820387 1.222233396 1.176570529 1.400484082 1.270043591 1.149094351 1.035742935 1.279042958 1 9.187197224 -5.766156374 24.99948809 1.20112756 0.937498952 0.443945406 0.113379252 93.07550473 493299.4276 0.030168363 0.066255236 1.71E-06 5.766156374 -0.263628608 SLHLSPQEQS(ph)ASYQDRR ddPTM_K562_Paclitaxel_30min_R1 1 SLHLSPQEQSASYQDRR 17 1 Q9H410-4;Q9H410;Q5JW53 Q9H410-4 DSN1 Kinetochore-associated protein DSN1 homolog 1 S(0.004)LHLS(0.021)PQEQS(0.962)AS(0.013)YQDRR 90.442 0.003694 380130000 688.51 501.11 506.27 622.36 481.75 688.87 414.93 442.48 469.25 482.79 TRUE FALSE 698.1512642 555.8228844 378.455877 582.4446152 547.3725061 811.0314223 493.6608014 404.8885621 514.3235592 384.397133 1.816223911 1.445960016 0.984543964 1.515215815 1.423976557 2.109878958 1.284246835 1.053307966 1.338000508 1 8.586453766 -7.989549851 24.99687265 1.151147881 1.527134147 0.310223578 0.283244333 294.5407512 704542.8304 0.124270045 0.08368914 1.02E-08 7.989549851 0.375986266 SLIEEGGDWDRR ddPTM_K562_Paclitaxel_30min_R1 4 SLIEEGGDWDRR 12 1 Q15008-4;C9J0E9;Q15008;H7C531;Q15008-3;Q15008-2 Q15008-4 PSMD6 26S proteasome non-ATPase regulatory subunit 6 0 ;;; 193.3 0.00018506 234318000 7056.3 6620.7 8710.8 7638.3 6682.8 6516.9 6352 7721.3 6566.5 8157.1 FALSE TRUE 7155.109971 7343.570416 6511.650806 7148.413626 7593.110501 7672.580713 7557.25884 7065.32737 7197.241665 6494.678542 1.101688086 1.130705757 1.002613257 1.100657035 1.169127995 1.181364199 1.163607835 1.08786406 1.108175196 1 12.66504241 -3.377893862 19.95352025 1.110370844 0.532979633 0 0.060178643 0 0 0.01417944 0 0.000418896 3.377893862 -0.577391211 SLIGS(ph)PGR ddPTM_K562_Paclitaxel_30min_R1 1 SLIGSPGR 8 0 C9JE98;C9J0Q5;Q9Y618-5;Q9Y618-4;Q9Y618;C9J7T7;A0A384DVL6 C9JE98 NCOR2 Nuclear receptor corepressor 2 1 SLIGS(1)PGR 84.817 0.024164 16207000 3004.3 2640.6 3777.7 3252.9 2745.2 2863.2 2278.5 3466.6 2780.6 3284.1 TRUE FALSE 3046.369469 2928.909638 2823.972913 3044.273553 3119.142717 3370.948319 2710.83348 3172.090692 3047.689054 2614.798617 1.165049365 1.120128188 1.079996331 1.164247806 1.192880666 1.289180856 1.036727441 1.213130017 1.165554025 1 11.35248412 -11.36688226 3.267407705 0.998657442 1.158146335 0.340392665 0.066207876 11342432.27 16300316.69 146289.2416 0.017176786 4.30E-12 11.36688226 0.159488894 SLLGDSAPT(ph)LHLNKGT(ph)PSQSPVVGR ddPTM_K562_Paclitaxel_30min_R1 1 SLLGDSAPTLHLNKGTPSQSPVVGR 25 1 C9J2I0;B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 C9J2I0 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 2 SLLGDS(0.011)APT(0.92)LHLNKGT(0.376)PS(0.346)QS(0.346)PVVGR 70.315 0.0071345 108080000 3534.2 2983.8 5599.4 4221.6 2996.9 3010.1 2831.5 4448.5 3831.7 4872.4 TRUE FALSE 3583.689704 3309.581375 4185.762217 3950.845471 3405.128518 3543.898971 3368.762344 4070.572158 4199.751905 3879.402205 0.923773694 0.853116331 1.078970933 1.01841605 0.877745678 0.91351677 0.868371508 1.049278199 1.082577078 1 11.92161864 -8.28700222 23.64143509 1.049445805 0.936288414 0.35534793 0.068028354 475.1403007 439422.4046 0.039680241 0.019076732 5.16E-09 8.28700222 -0.113157391 SLLGDSAPTLHLNKGT(ph)PSQS(ph)PVVGR ddPTM_K562_Paclitaxel_30min_R1 1 SLLGDSAPTLHLNKGTPSQSPVVGR 25 1 C9J2I0;B8ZZY2;P52594-2;P52594-3;P52594;P52594-4 C9J2I0 AGFG1 Arf-GAP domain and FG repeat-containing protein 1 2 SLLGDSAPTLHLNKGT(0.989)PS(0.221)QS(0.79)PVVGR 95.996 2.96E-05 105030000 2326.5 1745.9 4013.7 2213.9 2227.7 1994.1 1583.2 2459.1 2298.6 3545.8 TRUE FALSE 2359.078178 1936.523266 3000.391794 2071.910363 2531.150455 2347.725636 1883.603935 2250.184106 2519.3908 2823.164014 0.835614993 0.685940759 1.062776296 0.733896562 0.896565146 0.831593781 0.66719607 0.797043351 0.892399729 1 11.46309723 -9.030744347 3.613647841 0.999602347 0.814156963 0.227810928 0.106890057 0.3334484 11.828464 0.100511902 0.026554165 9.32E-10 9.030744347 -0.185445384 SLLNHTPPS(ph)GRPR ddPTM_K562_Paclitaxel_30min_R1 1 SLLNHTPPSGRPR 13 1 Q9UKI8;B3KRP1;Q9UKI8-2;F8W7X8 Q9UKI8 TLK1 Serine/threonine-protein kinase tousled-like 1 1 SLLNHT(0.442)PPS(0.558)GRPR 92.633 0.0099645 39983000 3307.3 2387.3 3655 3271.1 2907.5 2866.1 2462.3 3017.7 2776.4 3223.5 TRUE FALSE 3353.612404 2647.953487 2732.250046 3061.306287 3303.550724 3374.362593 2929.508571 2761.327549 3043.085625 2566.548931 1.306662173 1.031717516 1.064561837 1.192771449 1.287156728 1.314747034 1.141419334 1.075891255 1.185672164 1 11.32561405 -11.18262673 5.529533535 0.999994747 1.173825401 0.232243595 0.096758581 6.71E-06 9.92E-07 0.10038061 0.024345138 6.57E-12 11.18262673 0.173830654 SLLPLSTS(ph)LDHR ddPTM_K562_Paclitaxel_30min_R1 3 SLLPLSTSLDHR 12 0 Q8TEQ6 Q8TEQ6 GEMIN5 Gem-associated protein 5 1 SLLPLS(0.098)T(0.078)S(0.824)LDHR;SLLPLST(0.234)S(0.765)LDHR;SLLPLST(0.234)S(0.765)LDHR 121.92 0.0015627 19176100 3775.4 3693.5 4465.6 4663.2 3730.21 3570.27 3294.2 3839.1 3549.02 3978.4 TRUE FALSE 3828.267248 4096.768821 3338.20405 4364.123224 4238.327755 4203.407255 3919.257253 3512.944492 3889.919228 3167.599896 1.208570329 1.293335318 1.053859123 1.377738151 1.33802497 1.327000692 1.237295549 1.109024058 1.228033639 1 11.6291744 -9.169876459 0.841481787 1.004828954 1.263052665 0.395019159 0.093458931 0.874073451 1.317970078 0.093708012 0.033059754 6.76E-10 9.169876459 0.258223711 SLLSHEFQDET(ph)DT(ph)EEETLYSSKH ddPTM_K562_Paclitaxel_30min_R1 1 SLLSHEFQDETDTEEETLYSSKH 23 1 O75976-2;O75976 O75976-2 CPD Carboxypeptidase D 2 SLLSHEFQDET(0.968)DT(0.968)EEET(0.055)LY(0.006)S(0.003)S(0.001)KH 76.533 0.0043782 9897700 865.98 1024.8 1114.6 863.53 696.19 666.59 591.14 747.97 1054.4 1040.6 TRUE FALSE 878.1063918 1136.69113 833.2054448 808.1470508 791.0228646 784.8003771 703.305729 684.4252798 1155.679831 828.5251488 1.059842774 1.371945235 1.005648949 0.97540437 0.954736094 0.947225776 0.848864672 0.826076651 1.394863913 1 9.694401679 -5.888050029 7.961251671 0.976976271 1.214608073 0.225646518 0.162643202 0.295401371 19.43765804 0.041271057 0.086590957 1.29E-06 5.888050029 0.237631802 SLLSHEFQDET(ph)DTEEETLYSSKH ddPTM_K562_Paclitaxel_30min_R1 1 SLLSHEFQDETDTEEETLYSSKH 23 1 O75976-2;O75976 O75976-2 CPD Carboxypeptidase D 1 SLLSHEFQDET(0.871)DT(0.128)EEET(0.001)LYSSKH 72.864 0.00088227 23798000 1142.8 886.26 1453.8 1139.7 1028.3 950.61 915.24 1276.1 1083.5 1355.7 TRUE FALSE 1158.802726 983.0248639 1086.77021 1066.604743 1168.371869 1119.187336 1088.902012 1167.68734 1187.575016 1079.407596 1.073554355 0.910707751 1.006820976 0.988139001 1.082419536 1.036853308 1.008795951 1.081785365 1.100209986 1 10.07602403 -6.74484491 24.92454996 1.052881351 0.989656759 0.253564439 0.047448364 300.8030867 451797.9451 0.013643343 0.017563156 1.80E-07 6.74484491 -0.063224592 SLLSS(ph)PTK ddPTM_K562_Paclitaxel_30min_R1 1 SLLSSPTK 8 0 I3NI36;Q92667-2;Q92667 I3NI36 AKAP1 "A-kinase anchor protein 1, mitochondrial" 1 SLLS(0.143)S(0.856)PTK 104.42 0.012886 12258000 4212.6 3616 7075.1 5148.7 3906 3572.8 3417.1 5315.8 3248.9 6488 TRUE FALSE 4271.589397 4010.807109 5288.903501 4818.485427 4438.063329 4206.385915 4065.476887 4864.18961 3560.971361 5165.742039 0.826907222 0.776424196 1.023841969 0.932777013 0.85913375 0.814284934 0.787007337 0.941624567 0.689343629 1 12.33475989 -6.991145086 23.59113559 0.838823994 0.892001774 0.038386921 0.099406795 327.7097236 873065.5307 0.030521832 0.034545281 1.02E-07 6.991145086 0.05317778 SLNERAET(ph)PPLPIPPPPPDIQPLER ddPTM_K562_Paclitaxel_30min_R1 4 SLNERAETPPLPIPPPPPDIQPLER 25 1 U3KPW8;A0A669KB72;Q8IX15;Q8IX15-3 U3KPW8 HOMEZ Homeobox and leucine zipper protein Homez 1 S(0.094)LNERAET(0.906)PPLPIPPPPPDIQPLER;S(0.033)LNERAET(0.967)PPLPIPPPPPDIQPLER;S(0.376)LNERAET(0.624)PPLPIPPPPPDIQPLER;S(0.092)LNERAET(0.908)PPLPIPPPPPDIQPLER 113.79 7.11E-07 110097000 4754.21 4509.59 5608.9 5397.29 4263.52 4299.46 4001.81 4938.4 7023.4 4983.79 TRUE FALSE 4820.783608 5001.962287 4192.863825 5051.131977 4844.283606 5061.908864 4761.132557 4518.852095 7698.028951 3968.090862 1.214887404 1.260546308 1.056645115 1.272937579 1.220809647 1.275653466 1.199854722 1.138797536 1.939983034 1 11.95422935 SLPAS(ph)PSTSDFCQTR ddPTM_K562_Paclitaxel_30min_R1 2 SLPASPSTSDFCQTR 15 0 Q9Y2D8-2;Q9Y2D8-3;Q9Y2D8;S4R2Y6 Q9Y2D8-2 SSX2IP Afadin- and alpha-actinin-binding protein 1 SLPAS(0.955)PS(0.043)T(0.002)S(0.001)DFCQTR;S(0.001)LPAS(0.981)PS(0.013)T(0.004)S(0.001)DFCQTR 181.97 1.12E-06 146800000 1576.21 1379.64 2362.5 1948.55 1920.87 1813.31 1450.24 1827.6 1357.18 1966.98 TRUE FALSE 1598.281803 1530.273761 1766.057656 1823.578724 2182.525015 2134.875068 1725.415469 1672.333972 1487.543203 1566.108396 1.020543538 0.977118675 1.127672682 1.164401346 1.393597672 1.36317197 1.101721613 1.067827729 0.949834128 1 10.61296836 -8.36396911 2.488407658 0.982864268 1.17392059 0.273719826 0.124266939 0.471675617 5.514846906 0.103236573 0.040459824 4.33E-09 8.36396911 0.191056322 SLPAT(ph)PQGK ddPTM_K562_Paclitaxel_30min_R1 1 SLPATPQGK 9 0 Q13111;Q13111-3;Q13111-2;K7EPA1 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 S(0.009)LPAT(0.991)PQGK 108.35 0.017146 20960000 4176 3275.3 6218.5 4061 3670 3201.8 2672.1 4466.4 3941 5353.6 TRUE FALSE 4234.476884 3632.90833 4648.562766 3800.545636 4169.916134 3769.594274 3179.117026 4086.951442 4319.550659 4262.533381 0.993417882 0.852288535 1.090563369 0.891616627 0.978271784 0.884355367 0.745828065 0.958808079 1.013376383 1 12.05749542 -4.879341164 18.15713178 0.930602129 10.74227278 0.033219144 0.09179124 894.6997282 135013.1922 0.022381764 1016.736969 1.32E-05 4.879341164 9.81167065 SLPLSPELESS(ph)P ddPTM_K562_Paclitaxel_30min_R1 1 SLPLSPELESSP 12 0 Q6DT37 Q6DT37 CDC42BPG Serine/threonine-protein kinase MRCK gamma 1 SLPLSPELES(0.085)S(0.915)P 170.52 0.00017996 2974300 2105 1450.8 2004.7 1779.3 1607 1769.6 1751.8 1943.5 1706.5 2297 TRUE FALSE 2134.476494 1609.20325 1498.588691 1665.183662 1825.900607 2083.413714 2084.194905 1778.387544 1870.41695 1828.870139 1.167101178 0.879889291 0.819406834 0.910498578 0.998376302 1.139180781 1.139607925 0.97239684 1.022717201 1 10.83673692 -6.981424513 5.384387511 1.059687263 0.932334898 0.215303563 0.098193178 0.253219948 22.12235709 0.032680769 0.036099741 1.04E-07 6.981424513 -0.127352365 SLPSSS(ph)QLKGSPQAISR ddPTM_K562_Paclitaxel_30min_R1 1 SLPSSSQLKGSPQAISR 17 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 SLPS(0.032)S(0.161)S(0.743)QLKGS(0.064)PQAISR 120.32 0.0005047 64047000 1297.2 965.69 2178.8 1508.2 1140.5 1031.5 1080.2 1406.5 1600.2 1956.7 TRUE FALSE 1315.364802 1071.1273 1628.734993 1411.470802 1295.855409 1214.422042 1285.162311 1287.009046 1753.90636 1557.923466 0.844306432 0.68753525 1.045452507 0.905994956 0.831783741 0.779513287 0.824920055 0.826105437 1.125797511 1 10.60540865 -8.754149492 24.97043819 1.062898776 0.843734472 0.485585482 0.090448628 126.2560354 432482.5688 0.065452621 0.02361202 1.76E-09 8.754149492 -0.219164304 SLPSSSQLKGS(ph)PQAISR ddPTM_K562_Paclitaxel_30min_R1 1 SLPSSSQLKGSPQAISR 17 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 S(0.022)LPS(0.045)S(0.212)S(0.126)QLKGS(0.596)PQAISR 83.823 0.0083904 358500000 1690.2 1719.6 2962.6 2202 1294 1592.3 1408.3 2122.1 2481.8 2303.5 TRUE FALSE 1713.868015 1907.351743 2214.654989 2060.773576 1470.264708 1874.672048 1675.517573 1941.814359 2720.187979 1834.045436 0.934474131 1.039969734 1.207524604 1.123621878 0.801651191 1.022151366 0.91356383 1.058760226 1.483162808 1 10.84081366 -8.546956896 24.99250593 1.25137506 1.01057544 0.273366715 0.151107075 289.7575641 300754.9746 0.100090717 0.037834223 2.84E-09 8.546956896 -0.24079962 SLPTTVPES(ph)PNYR ddPTM_K562_Paclitaxel_30min_R1 4 SLPTTVPESPNYR 13 0 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 1 SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR;SLPTTVPES(1)PNYR 284.51 2.59E-123 6007400000 8954.8 9310.1 11378.4 9905.7 8206.3 8578.5 8440.6 10146.6 6964.6 9164.7 TRUE FALSE 9080.194828 10326.6082 8505.782194 9270.392738 9324.136994 10099.77653 10042.15979 9284.582997 7633.580949 7296.929109 1.244385781 1.415199195 1.165666004 1.270451254 1.277816579 1.384113286 1.37621726 1.272395943 1.046136098 1 12.83307372 -8.772618009 3.780479558 1.00374019 1.30586362 0.720449229 0.069719447 0.113797211 3.296228741 0.064410611 0.018319921 1.69E-09 8.772618009 0.30212343 SLQVVDLES(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SLQVVDLESR 10 0 H0YMT3;Q6P4I2 H0YMT3 WDR73 WD repeat-containing protein 73 1 SLQVVDLES(1)R 85.533 0.01892 18497000 176.91 206.33 126.84 0 238.27 262.58 107.86 173.11 186.49 0 TRUE FALSE 179.3872858 228.8578072 94.81767326 0 270.7264079 309.1448762 128.3258719 158.403225 204.4031978 0 0 SLS(ph)AIDR ddPTM_K562_Paclitaxel_30min_R1 2 SLSAIDR 7 0 O95831-6;O95831-4;O95831-3;O95831 O95831-6 AIFM1 "Apoptosis-inducing factor 1, mitochondrial" 1 S(0.001)LS(0.999)AIDR;S(0.004)LS(0.996)AIDR 94.309 0.015439 46765000 6349.4 6005.5 7371.2 6264.9 5468.8 5532.8 5509.9 6477.8 4847.7 7385.2 TRUE FALSE 6438.31119 6661.200799 5510.249394 5863.097355 6213.743148 6513.964396 6555.374761 5927.470457 5313.343245 5880.092186 1.094933716 1.132839518 0.937102552 0.997109768 1.056742471 1.107799706 1.114842175 1.008057403 0.903615637 1 12.52162306 -8.525993401 8.996164442 0.952862626 1.059979023 0.360194897 0.059612842 0.131215479 137.6781321 0.040901539 0.016503506 2.98E-09 8.525993401 0.107116397 SLS(ph)ASPALGSTK ddPTM_K562_Paclitaxel_30min_R1 3 SLSASPALGSTK 12 0 O95544;O95544-2 O95544 NADK NAD kinase 1 S(0.028)LS(0.934)AS(0.038)PALGSTK;SLS(0.998)AS(0.001)PALGSTK;S(0.041)LS(0.919)AS(0.041)PALGSTK 158.58 0.00056456 74439000 5577.9 4635.9 8877 5886.4 4836.2 4635.7 4030.9 6267.9 6257 7125.6 TRUE FALSE 5656.007809 5142.06324 6635.891561 5508.872651 5494.972318 5457.776307 4795.742232 5735.402772 6858.012807 5673.398809 0.996934642 0.906346163 1.169650114 0.971000424 0.968550335 0.961994122 0.845303211 1.010928892 1.208801468 1 12.46999757 -8.540188742 24.2990407 1.106222386 0.974753937 0.243646903 0.09051777 246.1823664 345570.9035 0.060612035 0.022922173 2.88E-09 8.540188742 -0.131468449 SLS(ph)DSESDDSK ddPTM_K562_Paclitaxel_30min_R1 1 SLSDSESDDSK 11 0 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 S(0.001)LS(0.995)DS(0.004)ESDDSK 131.06 0.00086649 21848000 1973.9 1717.1 3482.7 1928.5 1713.7 1237.4 1601.5 1901.9 1181.9 2492.9 TRUE FALSE 2001.54069 1904.578785 2603.449312 1804.814642 1947.134953 1456.835516 1905.376265 1740.321724 1295.426776 1984.845612 1.008411273 0.959560166 1.311663384 0.909297243 0.981000709 0.733979261 0.95996195 0.87680458 0.65265871 1 10.95481108 -6.715165523 2.203409338 0.849472447 1.077239822 0.341504784 0.135499038 0.339896819 3.384293859 0.044072207 0.058409218 1.93E-07 6.715165523 0.227767375 SLS(ph)EQPVMDTATATEQAK ddPTM_K562_Paclitaxel_30min_R1 1 SLSEQPVMDTATATEQAK 18 0 A2ABK4;A0A0A0MT02;P18615;P18615-3;A0A0G2JI50;E9PD43;A0A0A0MSN9;P18615-4 A2ABK4 NELFE Negative elongation factor E 1 S(0.059)LS(0.938)EQPVMDT(0.002)AT(0.001)ATEQAK 127.53 2.70E-06 44574000 1692.7 956.2 2325.6 1404.6 1049.2 820.16 843.86 1267.7 1223.7 1725.9 TRUE FALSE 1716.403022 1060.60115 1738.473517 1314.515243 1192.118803 965.6038604 1003.97803 1160.000972 1341.241853 1374.160633 1.249055592 0.771817446 1.265116665 0.956595038 0.867525073 0.702686307 0.730611841 0.844152383 0.976044445 1 10.42433494 -6.623589906 3.55015188 0.831602105 1.068972284 0.317655835 0.154349138 0.274190624 6.721537731 0.045866196 0.06102494 2.38E-07 6.623589906 0.237370179 SLS(ph)ESSVIMDR ddPTM_K562_Paclitaxel_30min_R1 4 SLSESSVIMDR 11 0 H3BSS6;Q9H2Y7;A0A0C4DGM5;Q9H2Y7-2;H3BNX5 H3BSS6 ZNF106 Zinc finger protein 106 1 SLS(0.999)ESSVIMDR;S(0.013)LS(0.986)ESSVIMDR;S(0.007)LS(0.992)ESSVIMDR;S(0.003)LS(0.97)ES(0.011)S(0.017)VIMDR 171.49 0.00011138 305522000 8293.8 7606 10838 8555.6 7304.1 7281.7 7177.37 9144.9 7312.17 9759.7 TRUE FALSE 8409.938789 8436.448802 8101.812857 8006.882109 8299.042079 8573.007255 8539.238489 8367.983664 8014.5366 7770.667783 1.08226719 1.085678739 1.042614751 1.030398202 1.067995996 1.103252319 1.098906648 1.076868025 1.031383251 1 12.92382287 -8.947291144 3.354821185 1.000505194 1.0730564 0.555503383 0.021550292 0.180016671 4.326696043 0.023811579 0.006340751 1.13E-09 8.947291144 0.072551206 SLS(ph)FEMQQDELIEKPMSPMQYAR ddPTM_K562_Paclitaxel_30min_R1 2 SLSFEMQQDELIEKPMSPMQYAR 23 1 Q9Y6Y0 Q9Y6Y0 IVNS1ABP Influenza virus NS1A-binding protein 1 S(0.155)LS(0.845)FEMQQDELIEKPMSPMQYAR;S(0.195)LS(0.805)FEMQQDELIEKPMSPMQYAR 93.876 0.00016846 18976000 479.11 334.18 779 476.701 549.11 355.14 446.11 804.22 629.49 770.511 TRUE FALSE 485.8190182 370.6669025 582.3318155 446.1275315 623.9080785 418.1190926 530.7570436 735.8964912 689.9553271 613.4804353 0.791906294 0.604203298 0.949226384 0.727207431 1.016997516 0.681552448 0.865157246 1.199543537 1.124657426 1 9.260873525 -8.149261979 4.938805632 1.119634896 0.798886591 0.567503605 0.121996721 0.154752621 5.673672959 0.057549544 0.03243054 7.09E-09 8.149261979 -0.320748305 SLS(ph)FSDEMSSCR ddPTM_K562_Paclitaxel_30min_R1 2 SLSFSDEMSSCR 12 0 Q14153-2;Q14153 Q14153-2 FAM53B Protein FAM53B 1 S(0.03)LS(0.968)FS(0.002)DEMSSCR;S(0.207)LS(0.785)FS(0.009)DEMSSCR 153.75 1.70E-09 27347000 965.1 677.7 1136.57 876.65 923.09 751.68 660.67 863.92 934.12 1024.51 TRUE FALSE 978.6143776 751.6935778 849.6288466 820.4255927 1048.830486 884.9798939 786.0286836 790.5246036 1023.8464 815.7142996 1.199702369 0.921515754 1.041576502 1.005775666 1.28578166 1.084914037 0.963607827 0.969119462 1.255153183 1 9.671920133 SLS(ph)GSPLK ddPTM_K562_Paclitaxel_30min_R1 1 SLSGSPLK 8 0 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 S(0.152)LS(0.523)GS(0.325)PLK 86.882 0.020474 111340000 3717 2936 6746.2 4543 3415.4 3032.7 2722.2 4380.7 2602.3 5243.4 TRUE FALSE 3769.049468 3256.562409 5043.038374 4251.632314 3880.635303 3570.506764 3238.723239 4008.532192 2852.262542 4174.792202 0.902811274 0.780053773 1.207973506 1.018405733 0.929539751 0.855253769 0.775780705 0.960175261 0.683210662 1 12.02748867 -7.124188332 3.371874225 0.847310085 0.979140665 0.164913235 0.129527261 0.459945772 9.70705343 0.045395367 0.045846318 7.51E-08 7.124188332 0.131830581 SLS(ph)IESLCPEDGHR ddPTM_K562_Paclitaxel_30min_R1 1 SLSIESLCPEDGHR 14 0 Q92502;Q92502-2 Q92502 STARD8 StAR-related lipid transfer protein 8 1 S(0.194)LS(0.805)IES(0.001)LCPEDGHR 103.39 0.0039257 26747000 2030.9 2260.5 2455.6 2392.8 2132.2 1924.2 2101.2 2684.6 2300.6 3270 TRUE FALSE 2059.338866 2507.309035 1835.65341 2239.336518 2422.641738 2265.429853 2499.891731 2456.526473 2521.582909 2603.572205 0.790966681 0.963026502 0.705051854 0.860101561 0.930506837 0.870123689 0.960177608 0.943521546 0.968508922 1 11.3462767 -7.516171926 0.708068505 0.985034076 0.828434436 0.457222269 0.064850654 0.690343273 0.723291717 0.051384527 0.040687271 3.05E-08 7.516171926 -0.15659964 SLS(ph)KSDSDLLTCSPTEDATMGSR ddPTM_K562_Paclitaxel_30min_R1 1 SLSKSDSDLLTCSPTEDATMGSR 23 1 A0A3B3ISP1;Q92625 A0A3B3ISP1 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 S(0.346)LS(0.524)KS(0.101)DS(0.029)DLLTCSPTEDATMGSR 88.627 0.00025175 53006000 719.38 633.03 1089.3 765.16 769.35 547.45 677.1 791.45 665.88 1131.6 TRUE FALSE 729.4535395 702.1463562 814.2927427 716.0860623 874.1484952 644.5325709 805.5761903 724.2113824 729.8407492 900.9792989 0.809622974 0.779314638 0.903786295 0.794786366 0.970220399 0.715368901 0.894111764 0.803804686 0.810052739 1 9.815350148 -11.89590285 2.439826483 1.093331219 0.832488214 0.34959736 0.06904038 34073535.76 17850901.98 18265949.71 0.01617978 1.27E-12 11.89590285 -0.260843005 SLS(ph)LESTDR ddPTM_K562_Paclitaxel_30min_R1 3 SLSLESTDR 9 0 Q5VT25-2;A0A0A0MRJ1;H0Y5V1;A0A0A0MRJ0;Q5VT25-3;Q5VT25-4;Q5VT25-5;Q5VT25;Q5VT25-6;H0Y7V8 Q5VT25-2 CDC42BPA Serine/threonine-protein kinase MRCK alpha;Non-specific serine/threonine protein kinase 1 S(0.001)LS(0.981)LES(0.018)TDR;S(0.004)LS(0.995)LEST(0.001)DR;S(0.005)LS(0.519)LES(0.292)T(0.184)DR 115.7 0.0039692 25593900 2450.87 2328.13 3911.8 3707.2 2732.72 3123.02 2600.42 2781.56 2099.13 3467.5 TRUE FALSE 2485.189742 2582.323107 2924.217709 3469.436785 3104.962729 3676.843748 3093.83612 2545.249116 2300.760816 2760.821597 0.900163105 0.93534588 1.059183872 1.256668228 1.12465171 1.331793315 1.120621529 0.921917272 0.833360916 1 11.43088195 -8.277640458 7.067758582 0.907124316 1.111382894 0.306006319 0.127480837 0.22236287 58.71931488 0.075114807 0.037614602 5.28E-09 8.277640458 0.204258579 SLS(ph)LQPQLTQR ddPTM_K562_Paclitaxel_30min_R1 1 SLSLQPQLTQR 11 0 P21731 P21731 TBXA2R Thromboxane A2 receptor 1 S(0.008)LS(0.992)LQPQLTQR 141.73 0.00056174 23141000 635.65 586.27 996.87 467.98 738.68 886.91 725.66 953.05 664 1139.1 TRUE FALSE 644.5510611 650.2809412 745.1978394 437.9658574 839.300722 1044.191036 863.3501968 872.0824537 727.7801668 906.9507947 0.710679195 0.716996936 0.821651895 0.482899249 0.925409324 1.151320492 0.95192617 0.961554319 0.802447245 1 9.824880471 -6.936102258 10.18666466 0.977302169 0.695886416 0.608069649 0.111407575 0.29211387 44.65124651 0.034586832 0.039230839 1.16E-07 6.936102258 -0.281415753 SLS(ph)PGVSR ddPTM_K562_Paclitaxel_30min_R1 3 SLSPGVSR 8 0 S4R3H4;E7EQT4;Q9UKV3-5;Q9UKV3 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 S(0.012)LS(0.988)PGVSR;S(0.014)LS(0.983)PGVS(0.003)R;S(0.001)LS(0.999)PGVSR 122.96 0.0032585 66135000 7814.6 6884.8 9554.4 8241.3 7552.6 6792.9 7185.3 8547.5 7248.9 8546.6 TRUE FALSE 7924.02851 7636.505747 7142.273553 7712.739905 8581.391987 7997.525438 8548.673165 7821.336523 7945.189234 6804.798229 1.16447663 1.122223685 1.04959373 1.133426686 1.261079564 1.175277381 1.256271366 1.149385516 1.167586307 1 12.73233667 -3.720884814 6.378208812 1.155145015 1.16383839 0 0.076743446 0 0 0.017771124 0 0.000190158 3.720884814 0.008693376 SLS(ph)PILPGR ddPTM_K562_Paclitaxel_30min_R1 3 SLSPILPGR 9 0 M0QZS0;A0A590UK10;A0A3B3IPE9;A0A087WZG4;Q6ZSZ5-2;Q6ZSZ5-1;Q6ZSZ5-6;Q6ZSZ5-5;Q6ZSZ5 M0QZS0 ARHGEF18 Rho guanine nucleotide exchange factor 18 1 S(0.22)LS(0.78)PILPGR;S(0.022)LS(0.978)PILPGR;S(0.002)LS(0.998)PILPGR 101.38 0.010457 133602000 7190.2 6112.4 9283.3 7899 7338.3 6896.1 6593.2 7356.8 6843.6 7961.4 TRUE FALSE 7290.884984 6779.772503 6939.616101 7392.393495 8337.900698 8119.026509 7844.225281 6731.79392 7500.958358 6338.86231 1.150188256 1.069556676 1.094773125 1.166201935 1.31536233 1.280833391 1.23748157 1.061987718 1.183328804 1 12.63000822 -6.36897895 4.728909763 1.194535744 1.10175187 0.105502636 0.09115814 0.420900099 14.87036192 0.026922515 0.04070253 4.28E-07 6.36897895 -0.092783874 SLS(ph)PPQSQSK ddPTM_K562_Paclitaxel_30min_R1 2 SLSPPQSQSK 10 0 I3L3C6;B4DWA1;I3L4C2;Q9UQB8-3;Q9UQB8-5;Q9UQB8-4;Q9UQB8-6;Q9UQB8-2;Q9UQB8;I3L0Y9 I3L3C6;I3L0Y9 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 1 S(0.01)LS(0.989)PPQS(0.001)QSK;S(0.029)LS(0.97)PPQS(0.001)QSK 98.902 0.010573 35278000 6665.3 5039.1 10667.2 7077.8 5386.5 4884.4 4912.2 6798.1 6384.3 7943.1 TRUE FALSE 6758.634764 5589.285979 7974.13343 6623.861587 6120.232494 5750.57976 5844.264307 6220.558973 6997.540541 6324.29186 1.068678504 0.883780525 1.260873724 1.047368106 0.967734037 0.909284373 0.924097818 0.983597707 1.106454398 1 12.62668823 -6.699282942 5.551617504 0.974543126 1.067766622 0.146725858 0.098128154 0.387551868 23.25378331 0.03006509 0.038588149 2.00E-07 6.699282942 0.093223496 SLS(ph)PQEDALTGSR ddPTM_K562_Paclitaxel_30min_R1 1 SLSPQEDALTGSR 13 0 Q96EN8 Q96EN8 MOCOS Molybdenum cofactor sulfurase 1 S(0.357)LS(0.643)PQEDALTGSR 130.21 0.00041538 14858000 1280.5 1261.3 2156.8 1468.3 1217.3 1127.8 1003.2 1394.7 1456 1720.2 TRUE FALSE 1298.430951 1399.012999 1612.289165 1374.12981 1383.116869 1327.799495 1193.551963 1276.21153 1595.855306 1369.622296 0.948021184 1.021458985 1.177177949 1.003291064 1.00985277 0.969463989 0.871446067 0.931798156 1.165179123 1 10.41956238 -6.680001625 3.093669354 0.979466241 1.050406256 0.062195103 0.088279982 0.603962361 11.61602129 0.028704945 0.037527713 2.09E-07 6.680001625 0.070940015 SLS(ph)PSHLTEDR ddPTM_K562_Paclitaxel_30min_R1 4 SLSPSHLTEDR 11 0 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 S(0.042)LS(0.909)PS(0.048)HLTEDR;S(0.001)LS(0.882)PS(0.117)HLTEDR;S(0.033)LS(0.864)PS(0.103)HLTEDR;S(0.012)LS(0.962)PS(0.027)HLTEDR 127.3 0.001052 348036000 9941.7 9241.2 10922.7 11131.8 8918.7 8788.4 8409.5 10201.7 8455.3 10750.9 TRUE FALSE 10080.91447 10250.18547 8165.129295 10417.85617 10133.57793 10346.89934 10005.15872 9335.001908 9267.469344 8559.860679 1.177696092 1.197471063 0.95388577 1.217059081 1.183848466 1.208769597 1.168845978 1.090555356 1.082665909 1 13.0633716 -8.855009001 1.464948443 1.004999355 1.156087881 0.319423089 0.07224767 0.482406792 2.223077435 0.070323171 0.021295405 1.40E-09 8.855009001 0.151088527 SLS(ph)PSHLTEDRQGR ddPTM_K562_Paclitaxel_30min_R1 2 SLSPSHLTEDRQGR 14 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 S(0.03)LS(0.579)PS(0.353)HLT(0.038)EDRQGR;S(0.328)LS(0.665)PS(0.007)HLTEDRQGR 80.387 0.021602 86984000 1808.75 1515.11 1990.99 1291.84 1169.25 1588.34 1194.2 1338.39 4410.9 1437 TRUE FALSE 1834.07808 1680.534834 1488.33995 1208.987164 1328.521646 1870.009798 1420.793216 1224.685416 4834.586653 1144.138611 1.603020877 1.468821013 1.300838846 1.056678931 1.161154455 1.634425916 1.241801651 1.070399516 4.225525304 1 10.16004613 SLS(ph)PSLLGYQQPALMAAPLSLADAHR ddPTM_K562_Paclitaxel_30min_R1 2 SLSPSLLGYQQPALMAAPLSLADAHR 26 0 Q13469-3;Q13469-4;Q13469-2;Q13469;Q13469-5 Q13469-3 NFATC2 "Nuclear factor of activated T-cells, cytoplasmic 2" 1 S(0.216)LS(0.729)PS(0.055)LLGYQQPALMAAPLSLADAHR;S(0.199)LS(0.64)PS(0.161)LLGYQQPALMAAPLSLADAHR 117.53 1.28E-08 38069000 717.39 681.86 510.7 407.892 523.72 432.78 1367.05 1608.87 1021.75 1894.17 TRUE FALSE 727.4356733 756.3077807 381.7674687 381.7316328 595.0595307 509.5274565 1626.440601 1472.186451 1119.893653 1508.137114 0.482340542 0.501484761 0.253138435 0.253114673 0.394565935 0.33785221 1.078443456 0.976162205 0.742567531 1 10.55855188 -7.755259324 24.99980076 0.947306842 0.366808717 0.868584316 0.110302229 51.72352511 209234.8695 0.0452974 0.034183529 1.76E-08 7.755259324 -0.580498125 SLS(ph)PSPLGSSAASTALER ddPTM_K562_Paclitaxel_30min_R1 1 SLSPSPLGSSAASTALER 18 0 A0A0C3SFZ9;M0QZI3;O14526-3;O14526-2;O14526 A0A0C3SFZ9 FCHO1 F-BAR domain only protein 1 1 S(0.038)LS(0.879)PS(0.083)PLGSSAASTALER 94.007 0.0017582 8666600 604.25 720.29 596.1 602.15 521.16 406.8 516.41 409.46 368.31 347.42 TRUE FALSE 612.7113643 798.9336981 445.6071825 563.5307941 592.1508153 478.9402682 614.3961017 374.6738172 403.6878212 276.6156133 2.215028129 2.88824513 1.610925635 2.037234223 2.140699175 1.731428904 2.221118665 1.354492658 1.459381907 1 8.11173878 -7.095649289 0.120996496 0.30825766 3.595590942 0.593894156 0.328534458 11.95252732 0.556591257 4.80100788 9.66992417 8.02E-08 7.095649289 3.287333282 SLS(ph)SPTVTLSAPLEGAK ddPTM_K562_Paclitaxel_30min_R1 1 SLSSPTVTLSAPLEGAK 17 0 A0A1B0GVY1;Q96PU5-9;Q96PU5-4;Q96PU5-2;Q96PU5-6;Q96PU5-5;Q96PU5-7;Q96PU5 A0A1B0GVY1 NEDD4L E3 ubiquitin-protein ligase NEDD4-like 1 S(0.017)LS(0.921)S(0.056)PT(0.005)VTLSAPLEGAK 156.29 1.43E-07 25776000 2276.5 2157.9 4543.3 2518.9 2160.8 2155.6 1891.9 2512.8 2126.3 3426 TRUE FALSE 2308.378024 2393.50682 3396.287724 2357.349028 2455.137543 2537.865394 2250.878149 2299.321956 2330.540616 2727.779319 0.846248084 0.877456179 1.245074226 0.864200785 0.900049914 0.930377826 0.825168712 0.842928143 0.854372859 1 11.41351122 SLS(ph)TSGESLYHVLGLDK ddPTM_K562_Paclitaxel_30min_R1 3 SLSTSGESLYHVLGLDK 17 0 Q9H3Z4-2;Q9H3Z4 Q9H3Z4-2 DNAJC5 DnaJ homolog subfamily C member 5 1 S(0.042)LS(0.499)T(0.069)S(0.369)GES(0.021)LYHVLGLDK;S(0.164)LS(0.791)T(0.025)S(0.019)GESLYHVLGLDK;S(0.192)LS(0.782)T(0.021)S(0.005)GESLYHVLGLDK 151.58 7.39E-08 307016000 14093.6 12401.5 24738.8 17349.6 14715.6 11271 12592.2 17938.7 8435.4 20785.6 TRUE FALSE 14290.95388 13755.53771 18493.18397 16236.87431 16720.11386 13269.7536 14981.50421 16414.69547 9245.65786 16549.48331 0.863528704 0.831176264 1.117447816 0.981110649 1.010310325 0.801822833 0.905255103 0.991855465 0.558667463 1 14.01449856 -7.259653745 24.993093 0.854369572 0.963358667 0.137439903 0.136602379 351.1124502 4914455.989 0.045923207 0.043716283 5.50E-08 7.259653745 0.108989094 SLS(ph)VPDSGR ddPTM_K562_Paclitaxel_30min_R1 2 SLSVPDSGR 9 0 O75420 O75420 GIGYF1 PERQ amino acid-rich with GYF domain-containing protein 1 1 SLS(1)VPDSGR;S(0.001)LS(0.999)VPDSGR 120.63 0.0026833 69537000 5856.1 5737.8 7224.5 6307.4 5616.5 5501.9 5216.6 6323.1 4652.7 6947.6 TRUE FALSE 5938.103468 6364.272408 5400.585624 5902.871595 6381.562388 6477.584714 6206.422618 5785.913187 5099.612624 5531.675306 1.073472888 1.150514456 0.976301993 1.067103774 1.153640088 1.170998722 1.121978835 1.045960377 0.921892978 1 12.43350076 -8.558158226 4.456036738 0.962981704 1.101600329 0.501041343 0.055870813 0.179122314 8.166571904 0.042799981 0.015569856 2.77E-09 8.558158226 0.138618625 SLS(ph)VPVDLSR ddPTM_K562_Paclitaxel_30min_R1 2 SLSVPVDLSR 10 0 Q9NYF3;D6RHW3 Q9NYF3 FAM53C Protein FAM53C 1 S(0.001)LS(0.998)VPVDLSR;SLS(1)VPVDLSR 137.01 0.00092534 95143000 4468.8 4401.1 6023.4 4475.4 4135.8 4396.3 4553 5689.3 4285.6 5627.1 TRUE FALSE 4531.376987 4881.626982 4502.718174 4188.367875 4699.16598 5175.922078 5416.907982 5205.958454 4697.251029 4480.293931 1.01140172 1.089577393 1.005005083 0.934842209 1.048852163 1.155263953 1.20905192 1.161968061 1.048424746 1 12.12937767 -7.109361351 4.824182587 1.130206463 1.013013711 0.348263702 0.066109298 0.236197435 8.524455139 0.022587412 0.022771553 7.77E-08 7.109361351 -0.117192751 SLS(ph)YEEPR ddPTM_K562_Paclitaxel_30min_R1 2 SLSYEEPR 8 0 F5GZK9;Q8IZD4-2;Q8IZD4 F5GZK9 DCP1B mRNA-decapping enzyme 1B 1 S(0.03)LS(0.97)YEEPR;S(0.022)LS(0.977)Y(0.001)EEPR 112.71 0.0073097 56741000 4813.7 3996.9 5921.3 4699.4 4579.2 4076.2 4028 4699.9 3216.5 4839.2 TRUE FALSE 4881.106652 4433.295059 4426.394581 4398.001518 5202.964566 4799.056837 4792.291972 4300.614159 3525.459197 3852.968384 1.266843162 1.150618073 1.148827122 1.141457982 1.350378214 1.245547941 1.243792187 1.116182053 0.914998216 1 11.91175463 -8.570070963 3.681975344 0.96018255 1.217327821 0.727240826 0.063975862 0.127985846 3.549629359 0.052115835 0.018060001 2.69E-09 8.570070963 0.257145271 SLS(ph)YS(ph)PVER ddPTM_K562_Paclitaxel_30min_R1 1 SLSYSPVER 9 0 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.131)LS(0.854)Y(0.235)S(0.78)PVER 120.86 0.015681 29331000 4629.3 4858.8 6660.7 5290.1 4821.1 5097.1 4533.2 5353.4 5226.6 6334 TRUE FALSE 4694.124483 5389.300215 4979.123907 4950.816664 5477.815442 6000.999118 5393.351035 4898.595255 5728.638283 5043.127323 0.930796346 1.068642505 0.987308784 0.981695751 1.086194159 1.189936072 1.069445741 0.971340785 1.135929735 1 12.30010293 -6.765176035 24.99366878 1.079463113 0.997234384 0.275213347 0.065875895 136.0218072 909820.1762 0.020521695 0.024163979 1.72E-07 6.765176035 -0.08222873 SLS(ph)YSPVER ddPTM_K562_Paclitaxel_30min_R1 2 SLSYSPVER 9 0 Q9UQ35;Q9UQ35-2;I3L4U6 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.028)LS(0.88)YS(0.092)PVER;S(0.001)LS(0.564)YS(0.435)PVER 129.89 0.00069378 70769000 2209.88 2007.2 2414.4 1963.4 2009.01 1787.08 2246.8 2290.71 2337.9 2958.4 TRUE FALSE 2240.825138 2226.352884 1804.854859 1837.476312 2282.671175 2103.993546 2673.118571 2096.099887 2562.465741 2355.476456 0.951325636 0.945181548 0.766237699 0.780086894 0.96909106 0.893234802 1.134852596 0.889883608 1.08787576 1 11.2018032 -7.347434446 1.971570686 1.015667062 0.866693195 0.356039278 0.089671953 0.388062603 2.969882011 0.037718386 0.032591463 4.49E-08 7.347434446 -0.148973868 SLSDNGQPGT(ph)PDPADSGGTSAK ddPTM_K562_Paclitaxel_30min_R1 2 SLSDNGQPGTPDPADSGGTSAK 22 0 O75691 O75691 UTP20 Small subunit processome component 20 homolog 1 S(0.004)LS(0.003)DNGQPGT(0.993)PDPADSGGTSAK;SLSDNGQPGT(1)PDPADSGGTSAK 122.65 2.14E-07 44264000 3305.6 3494.9 5402.7 3990.3 2754.6 2514.6 2750.4 4350.4 3558.1 4615.8 TRUE FALSE 3351.888599 3876.485001 4038.721565 3734.380018 3129.823156 2960.529003 3272.274042 3980.806366 3899.871403 3675.097426 0.912054351 1.054797887 1.098942721 1.01613089 0.851629982 0.805564767 0.890391101 1.083183901 1.061161365 1 11.84356678 -11.59860085 12.09906855 1.000000359 0.97418271 0.005744763 0.098793832 1.08E-06 3.60E-08 0.108131127 0.026225286 2.52E-12 11.59860085 -0.025817649 SLSDS(ph)ESDDSKSK ddPTM_K562_Paclitaxel_30min_R1 2 SLSDSESDDSKSK 13 1 Q13185;S4R2Y4 Q13185 CBX3 Chromobox protein homolog 3 1 SLS(0.004)DS(0.981)ES(0.015)DDSKSK;SLS(0.005)DS(0.995)ESDDSKSK 203.85 8.78E-10 20538500 5304.1 3572.3 12203.4 5763.6 4344.9 2986.8 2997.3 6288.7 6067.9 8102.7 TRUE FALSE 5378.373765 3962.335795 9122.50074 5393.948493 4936.74894 3516.467043 3566.022028 5754.435682 6650.748907 6451.365292 0.83367993 0.61418562 1.414041885 0.836094105 0.765225455 0.545073311 0.552754629 0.891971764 1.030905646 1 12.65538879 -6.512567474 24.69429926 0.770405035 0.954170289 0.071939623 0.239815593 1038.861316 2487954.578 0.072262797 0.099594299 3.07E-07 6.512567474 0.183765253 SLSFPILNPALSQPSQPSS(ph)PLPGSHGR ddPTM_K562_Paclitaxel_30min_R1 2 SLSFPILNPALSQPSQPSSPLPGSHGR 27 0 E9PN76;Q8ND24-2;Q8ND24 E9PN76 RNF214 RING finger protein 214 1 SLSFPILNPALSQPS(0.003)QPS(0.33)S(0.623)PLPGS(0.043)HGR;SLSFPILNPALSQPS(0.034)QPS(0.339)S(0.577)PLPGS(0.051)HGR 146.82 1.97E-31 20478800 2623 2274 2666.6 2457.8 1658.21 2235.7 2494.89 3122.8 2192.61 3401.8 TRUE FALSE 2659.730093 2522.28301 1993.38385 2300.167709 1884.086276 2632.170004 2968.282353 2857.498648 2403.219987 2708.511293 0.981989663 0.931243306 0.735970293 0.849236891 0.695616917 0.971814299 1.095909167 1.055007101 0.887284463 1 11.40328439 -7.503455024 24.24744687 1.01695235 0.838302623 0.4425612 0.092205258 485.2878792 605807.1065 0.03402873 0.029544628 3.14E-08 7.503455024 -0.178649727 SLSGS(ph)SPCPK ddPTM_K562_Paclitaxel_30min_R1 1 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SLS(0.001)GS(0.928)S(0.071)PCPK 154.15 0.00019793 36788000 4435 3445 6762.8 4957.9 3667.5 3365.6 2786.4 4235.6 3918.2 5057.8 TRUE FALSE 4497.103683 3821.13675 5055.447499 4639.922485 4167.075591 3962.441905 3315.104854 3875.759342 4294.560617 4027.017584 1.116733064 0.948875109 1.255382524 1.152198218 1.034779587 0.983964391 0.823215887 0.962439141 1.066437016 1 11.97549606 -7.068578139 2.961884414 0.955931368 1.114893016 0.377880542 0.090390941 0.291449714 5.022402329 0.03285422 0.034201927 8.54E-08 7.068578139 0.158961648 SLSGSS(ph)PCPK ddPTM_K562_Paclitaxel_30min_R1 1 SLSGSSPCPK 10 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SLS(0.002)GS(0.087)S(0.911)PCPK 115 0.0040912 63853000 2359.3 2039.2 3989.4 2947.8 2500.2 2190.1 1901.8 2792 2614.7 3388.4 TRUE FALSE 2392.337479 2261.846752 2982.22663 2758.741302 2840.769569 2578.483484 2262.656622 2554.802173 2865.853618 2697.84222 0.886759597 0.838391043 1.105411802 1.022573256 1.052978394 0.955757703 0.838691234 0.946979832 1.062276213 1 11.39759026 -5.731861311 24.99894168 0.991820966 0.862575168 0.365081213 0.071098139 253.4263231 214188.639 0.019813826 0.052405986 1.85E-06 5.731861311 -0.129245798 SLSKS(ph)DSDLLTCSPTEDATMGSR ddPTM_K562_Paclitaxel_30min_R1 3 SLSKSDSDLLTCSPTEDATMGSR 23 1 A0A3B3ISP1;Q92625 A0A3B3ISP1 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 S(0.024)LS(0.234)KS(0.576)DS(0.165)DLLTCSPTEDATMGSR;S(0.05)LS(0.152)KS(0.399)DS(0.399)DLLTCSPTEDATMGSR;S(0.018)LS(0.242)KS(0.679)DS(0.06)DLLTCSPTEDATMGSR 95.445 0.00014773 206921000 4423.6 3902.14 7803.1 5482.2 3676.9 3756.77 3589.16 5000.1 4714.6 6295.2 TRUE FALSE 4485.544048 4328.188841 5833.110897 5130.596229 4177.75603 4422.980412 4270.184373 4575.310295 5167.458395 5012.234784 0.894918981 0.86352476 1.163774474 1.023614505 0.833511639 0.882436798 0.851952184 0.912828407 1.030968943 1 12.29123828 SLSNS(ph)NPDISGTPTSPDDEVR ddPTM_K562_Paclitaxel_30min_R1 1 SLSNSNPDISGTPTSPDDEVR 21 0 Q96N67-4;Q96N67-3;Q96N67-5;Q96N67-2;Q96N67-6;Q96N67;A0A0U1RRC1;A0A0U1RQJ5 Q96N67-4 DOCK7 Dedicator of cytokinesis protein 7 1 SLSNS(0.878)NPDIS(0.112)GT(0.01)PTSPDDEVR 237.14 5.10E-65 108570000 1135.7 1107.3 1247.6 1145 972.12 892.47 892.23 1286.3 778.29 1144 TRUE FALSE 1151.603304 1228.198759 932.6279499 1071.564825 1104.539202 1050.737024 1061.525985 1177.020786 853.048232 910.852172 1.264314166 1.348406247 1.023907038 1.176442081 1.212643759 1.153575801 1.16542071 1.292219333 0.936538615 1 9.831073119 -14.40369454 0.034943108 2.18E-07 1.830327458 0.317095216 0.10484244 1292.01431 3.728918545 156.0577613 59.92429914 3.95E-15 14.40369454 1.83032724 SLSNSNPDIS(ph)GTPTSPDDEVR ddPTM_K562_Paclitaxel_30min_R1 3 SLSNSNPDISGTPTSPDDEVR 21 0 Q96N67-4;Q96N67-3;Q96N67-5;Q96N67-2;Q96N67-6;Q96N67;A0A0U1RRC1;A0A0U1RQJ5 Q96N67-4 DOCK7 Dedicator of cytokinesis protein 7 1 SLS(0.008)NS(0.187)NPDIS(0.579)GT(0.173)PT(0.052)S(0.001)PDDEVR;SLSNS(0.028)NPDIS(0.891)GT(0.08)PTS(0.001)PDDEVR;S(0.002)LS(0.022)NS(0.24)NPDIS(0.716)GT(0.019)PTSPDDEVR 213.64 2.18E-36 196665000 2729.85 2550.9 3091.87 2289.84 2392.15 2608.06 2383.48 2455.85 2498.15 3224.43 TRUE FALSE 2768.076322 2829.415889 2311.289179 2142.979911 2718.001329 3070.562822 2835.732887 2247.210214 2738.10847 2567.289396 1.078209697 1.102102433 0.900283849 0.834724716 1.058704692 1.196032994 1.104563004 0.875324074 1.066536742 1 11.32603022 -3.661769808 16.99705976 1.020033617 1.073173701 0 0.11041754 0 0 0.027287382 0 0.000217886 3.661769808 0.053140084 SLSPEDAESLSVLSVPSPDTANQEPTPKSPCGLT(ph)EQYLHK ddPTM_K562_Paclitaxel_30min_R1 1 SLSPEDAESLSVLSVPSPDTANQEPTPKSPCGLTEQYLHK 40 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 SLSPEDAESLSVLSVPS(0.001)PDT(0.005)ANQEPT(0.021)PKS(0.12)PCGLT(0.687)EQY(0.165)LHK 86.771 5.12E-11 9045200 618.59 413.77 893.33 632.02 241.34 402.83 341.85 624.32 498.61 876.06 TRUE FALSE 627.2521685 458.9468079 667.7977929 591.485066 274.2145939 474.2662445 406.7142529 571.2801191 546.5037183 697.5184911 0.899262423 0.657970812 0.95739081 0.847984783 0.393128781 0.67993358 0.583087414 0.819017885 0.783497105 1 9.446087653 -11.0467647 13.93638534 0.999999996 0.729480436 0.201424933 0.157441725 0 0 0.158353446 0.038406352 8.98E-12 11.0467647 -0.270519559 SLSPS(ph)PLGSSAASTALERPSFLSQTGHGVSR ddPTM_K562_Paclitaxel_30min_R1 2 SLSPSPLGSSAASTALERPSFLSQTGHGVSR 31 1 A0A0C3SFZ9;M0QZI3;O14526-3;O14526-2;O14526 A0A0C3SFZ9 FCHO1 F-BAR domain only protein 1 1 S(0.007)LS(0.023)PS(0.579)PLGS(0.064)S(0.064)AAS(0.187)T(0.064)ALERPS(0.005)FLS(0.003)QT(0.002)GHGVS(0.002)R;S(0.139)LS(0.173)PS(0.601)PLGS(0.068)S(0.018)AAS(0.001)TALERPSFLSQTGHGVSR 49.559 0.0047298 69478000 865.49 870.51 1053.58 811.78 792.17 924.11 1079.07 1146.18 781.54 1102.71 TRUE FALSE 877.6095303 965.5552257 787.5906985 759.7160642 900.0769655 1087.987933 1283.817899 1048.804855 856.610409 877.9770967 0.999581348 1.099749902 0.897051531 0.865302827 1.02517135 1.239198537 1.462245318 1.19456972 0.97566373 1 9.778039495 -7.150573122 4.611885804 1.20373296 0.96805775 0.325556337 0.140123879 0.258666037 8.799703116 0.049698178 0.049770356 7.07E-08 7.150573122 -0.23567521 SLSQGTQLPSHVTPTTGVPTMSLHT(ph)PPSPSR ddPTM_K562_Paclitaxel_30min_R1 1 SLSQGTQLPSHVTPTTGVPTMSLHTPPSPSR 31 0 F8VQD8;A0A087X050;F8VVY1;F8VX63;F8VUB4;F8VV52;F8VP97;Q9NZN8-4;Q9NZN8-5;Q9NZN8 F8VQD8 CNOT2 CCR4-NOT transcription complex subunit 2 1 SLSQGTQLPSHVTPT(0.001)T(0.001)GVPT(0.245)MS(0.179)LHT(0.426)PPS(0.126)PS(0.023)R 107.89 5.57E-14 11613000 1016.5 789.17 1115.3 1344.6 1138.6 935.99 1070 1307.6 996.53 1582.6 TRUE FALSE 1030.734136 875.3342494 833.7287211 1258.363374 1293.696597 1101.974685 1273.026914 1196.511218 1092.251159 1260.065251 0.818000604 0.694673747 0.661655196 0.998649374 1.026690162 0.874537794 1.010286501 0.949562903 0.866821109 1 10.29928273 -6.264581834 24.99995856 0.960030042 0.721766233 0.746440784 0.063065943 130.3190759 1036761.668 0.017638332 0.027452899 5.44E-07 6.264581834 -0.238263809 SLSSLDTALAELRENHGQADHS(ph)PSMTATHFPR ddPTM_K562_Paclitaxel_30min_R1 2 SLSSLDTALAELRENHGQADHSPSMTATHFPR 32 1 Q9Y3L3;Q6ZT62-2;Q6ZT62;Q9Y3L3-2 Q9Y3L3 SH3BP1 SH3 domain-binding protein 1 1 SLSSLDT(0.001)ALAELRENHGQADHS(0.904)PS(0.084)MT(0.008)AT(0.003)HFPR;SLSSLDT(0.004)ALAELRENHGQADHS(0.903)PS(0.056)MT(0.034)AT(0.003)HFPR 73.603 2.47E-05 94744000 3847 4089.5 3622.3 3578.5 3422.1 3295.1 3572.1 4122.2 3805.2 4457.8 TRUE FALSE 3900.869869 4536.00544 2707.805565 3348.991027 3888.247957 3879.43972 4249.887327 3771.99338 4170.706462 3549.297913 1.099053944 1.278000763 0.762913013 0.943564364 1.095497772 1.093016088 1.197388168 1.062743526 1.175079287 1 11.79331796 -6.9694272 20.66285736 1.112962656 1.020660213 0.087222663 0.130925038 79.2216791 53539.54141 0.042664615 0.048374569 1.07E-07 6.9694272 -0.092302442 SLSSS(ph)PQAQPPRPAELSDEEVAELFQR ddPTM_K562_Paclitaxel_30min_R1 2 SLSSSPQAQPPRPAELSDEEVAELFQR 27 1 A0A087WXA6;A0A087WT45;Q4V328-4;Q4V328 A0A087WXA6 GRIPAP1 GRIP1-associated protein 1 1 S(0.002)LS(0.036)S(0.162)S(0.76)PQAQPPRPAELS(0.04)DEEVAELFQR;S(0.003)LS(0.038)S(0.168)S(0.772)PQAQPPRPAELS(0.019)DEEVAELFQR 82.726 4.68E-06 442860000 751.76 682.05 1186.39 1071.85 852.54 561.77 788.27 955.92 672.7 1177 TRUE FALSE 762.2869594 756.5185255 886.8711714 1003.106338 968.6703816 661.3920219 937.8401175 874.7086293 737.3158407 937.1267539 0.81342994 0.807274493 0.946372695 1.070406254 1.033659937 0.705765809 1.000761224 0.933394149 0.786783472 1 9.872100387 -5.75906423 24.88209634 0.934836363 0.810352164 0.181739025 0.105491599 98.53245712 1032160.193 0.027942702 0.06706122 1.74E-06 5.75906423 -0.124484199 SLSVLS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 SLSVLSPR 8 0 A0A087WVP4;A0A087X1R1;P53814-5;P53814;P53814-6 A0A087WVP4 SMTN Smoothelin 1 SLSVLS(1)PR 89.029 0.016636 7506200 1106.3 1244.6 1446.2 1383.7 1202.8 1065.4 1188.8 1396.6 1086.2 1288.2 TRUE FALSE 1121.791613 1380.489637 1081.088924 1294.955675 1366.641724 1254.333731 1414.368594 1277.950113 1190.534363 1025.664133 1.093722182 1.345947072 1.054037954 1.262553339 1.332445661 1.222947835 1.378978311 1.245973289 1.160744853 1 10.00234266 -9.081836425 2.879204496 1.000443583 1.246527368 0.361816955 0.098043007 0.376156978 7.138225639 0.091843343 0.024616853 8.28E-10 9.081836425 0.246083785 SLT(ph)LDAAPDHNPPCR ddPTM_K562_Paclitaxel_30min_R1 1 SLTLDAAPDHNPPCR 15 0 B7Z5R6;Q14596-2;Q14596 B7Z5R6 NBR1 Next to BRCA1 gene 1 protein 1 S(0.159)LT(0.841)LDAAPDHNPPCR 77.221 0.023908 0 655.85 792.61 901.69 572.25 706.6 652.79 852.86 670.59 710.28 872.39 TRUE FALSE 665.0339235 879.1498402 674.0472075 535.5484463 802.8508828 768.5531409 1014.685733 613.6191938 778.5055676 694.5964391 0.957439293 1.265698743 0.970415582 0.771021007 1.155852287 1.106474346 1.46082772 0.883418283 1.120802705 1 9.440031205 SLTASQDPEHS(ph)LTEYIHHLEVIQQR ddPTM_K562_Paclitaxel_30min_R1 1 SLTASQDPEHSLTEYIHHLEVIQQR 25 0 O95613-2;O95613 O95613-2 PCNT Pericentrin 1 S(0.022)LT(0.02)AS(0.02)QDPEHS(0.867)LT(0.056)EY(0.016)IHHLEVIQQR 75.3 0.00020398 8466800 803.31 639.08 816.44 957.14 856.34 763.78 924.2 1134.4 929.35 1182.3 TRUE FALSE 814.5588184 708.8569156 610.3196244 895.7533244 972.988006 899.225659 1099.562125 1038.025639 1018.61822 941.346611 0.865312318 0.753024345 0.648347396 0.951565889 1.033612906 0.955254577 1.168073601 1.102702902 1.082086245 1 9.878582222 -6.491085855 3.51585442 1.060925666 0.756109139 0.768031244 0.073745949 0.11296617 2.896974248 0.023090054 0.033707484 3.23E-07 6.491085855 -0.304816527 SLTDPSQESHTEAIS(ph)DAETSSSDISFSGIATR ddPTM_K562_Paclitaxel_30min_R1 2 SLTDPSQESHTEAISDAETSSSDISFSGIATR 32 0 Q5QJE6;J3KP30 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 SLTDPS(0.001)QES(0.003)HT(0.028)EAIS(0.963)DAET(0.001)S(0.001)S(0.001)S(0.001)DISFSGIATR;SLTDPSQESHTEAIS(0.869)DAET(0.084)S(0.028)S(0.01)S(0.008)DIS(0.001)FSGIATR 99.53 5.72E-12 144941000 2308.41 2267.34 3139.2 2499.44 2705.1 2419.25 2353.92 2908.4 2543.66 2706.76 TRUE FALSE 2340.734862 2514.895849 2346.670135 2339.137105 3073.580418 2848.27002 2800.564032 2661.313266 2787.989908 2155.120826 1.086126974 1.166939606 1.088881007 1.085385597 1.426175452 1.321628924 1.299492816 1.234878914 1.293658283 1 11.07355304 -6.729637745 24.99929881 1.279175278 1.109844185 0.342147484 0.104304871 202.0365195 158820.2804 0.029307412 0.037832316 1.86E-07 6.729637745 -0.169331093 SLTEISTDFDRSS(ph)PPLQPPPVNSLTTENR ddPTM_K562_Paclitaxel_30min_R1 1 SLTEISTDFDRSSPPLQPPPVNSLTTENR 29 1 J3KRR7;Q9NQC7-2;Q9NQC7 J3KRR7 CYLD Ubiquitin carboxyl-terminal hydrolase CYLD 1 SLTEIS(0.004)T(0.004)DFDRS(0.207)S(0.783)PPLQPPPVNS(0.001)LTTENR 73.058 0.00010055 22069000 436.16 518.71 432.73 488.92 517.44 282.78 507.22 409.8 333.18 501.77 TRUE FALSE 442.2675857 575.344512 323.4819596 457.5628595 587.9240883 332.9270626 603.4623471 374.9849321 365.1834277 399.5089986 1.107027845 1.440129043 0.809698807 1.145313025 1.471616636 0.833340585 1.510510024 0.938614483 0.914080606 1 8.642084189 -8.412064294 19.1023186 0.944338204 1.182233343 0.182060094 0.230133875 6.818812176 1157.152532 0.119746598 0.057523471 3.87E-09 8.412064294 0.237895139 SLTNDWEDHLAVK ddPTM_K562_Paclitaxel_30min_R1 2 SLTNDWEDHLAVK 13 0 P08238;P07900;P07900-2 P08238;P07900 HSP90AB1;HSP90AA1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha 0 ; 151.74 0.00097098 39925300 4710.2 4076.3 8074.6 5112.1 4320.5 3865.9 4347.5 5460.9 4859.9 7031 FALSE TRUE 4776.157332 4521.364219 6036.067365 4784.232787 4909.025247 4551.463085 5172.41543 4996.962459 5326.71511 5598.078341 0.853178009 0.80766362 1.078239174 0.854620549 0.876912567 0.813040263 0.923962673 0.892621031 0.951525646 1 12.45071596 -8.947799581 1.782879672 1.000327723 0.88676544 0.207895316 0.072116268 0.576114776 4.119514042 0.069325903 0.019913472 1.13E-09 8.947799581 -0.113562283 SLTSS(ph)LENIFSR ddPTM_K562_Paclitaxel_30min_R1 2 SLTSSLENIFSR 12 0 A0A3B3IRT3;O60343-2;O60343-3;O60343;Q5JU47 A0A3B3IRT3 TBC1D4 TBC1 domain family member 4 1 SLTS(0.258)S(0.742)LENIFSR;SLT(0.001)S(0.227)S(0.772)LENIFSR 264.29 7.54E-84 27820000 4615.9 4185.2 6291.6 5261.7 4653.2 4555.2 4299.4 4182.7 3397.1 4679 TRUE FALSE 4680.536841 4642.154289 4703.207766 4924.238112 5287.044619 5363.000762 5115.188706 3827.353527 3723.406634 3725.417232 1.256379232 1.246076345 1.262464705 1.321795065 1.419181877 1.439570504 1.373051228 1.027362384 0.999460303 1 11.8631863 -8.268568961 22.10310926 1.010058275 1.332486369 0.846928473 0.062783659 49.91796859 154750.7772 0.039683185 0.019802211 5.39E-09 8.268568961 0.322428094 SLTTECHLLDS(ph)PGLNCSNPFTQLER ddPTM_K562_Paclitaxel_30min_R1 2 SLTTECHLLDSPGLNCSNPFTQLER 25 0 Q15398;Q15398-1 Q15398 DLGAP5 Disks large-associated protein 5 1 SLTTECHLLDS(1)PGLNCSNPFTQLER;SLTTECHLLDS(1)PGLNCSNPFTQLER 148.19 6.01E-26 102270000 4112.5 4486.2 4061.1 4462.2 3864.7 3824 4243.6 5235.7 3544.8 6032.3 TRUE FALSE 4170.087688 4976.018487 3035.825078 4176.014464 4391.13757 4502.132708 5048.800947 4790.894605 3885.293879 4802.913949 0.868241183 1.036041566 0.63207984 0.869475179 0.914265302 0.937375259 1.051195379 0.997497489 0.808945136 1 12.22969425 -6.986698485 2.533067997 0.964107595 0.849704411 0.180236385 0.108331954 0.516435124 6.691053236 0.038587992 0.04241299 1.03E-07 6.986698485 -0.114403184 SLTVS(ph)DDAESSEPER ddPTM_K562_Paclitaxel_30min_R1 1 SLTVSDDAESSEPER 15 0 Q8NFC6;H0Y9Y2 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 SLTVS(0.536)DDAES(0.332)S(0.131)EPER 147.7 1.20E-05 14950000 2329.1 2672 3210.6 2716.5 2135 2344.6 2540.9 3189.7 2290.3 3280.2 TRUE FALSE 2361.714586 2963.737996 2400.044322 2542.275849 2425.823146 2760.38189 3023.022511 2918.715076 2510.293548 2611.693439 0.904284764 1.134795513 0.918960964 0.973420467 0.928831504 1.056931816 1.157495158 1.117556537 0.961174658 1 11.35076985 -7.402741155 6.536184118 1.073976354 0.978585076 0.2181277 0.079427852 0.35749083 17.74710525 0.027976947 0.024567148 3.96E-08 7.402741155 -0.095391278 SLTVSDDAES(ph)SEPER ddPTM_K562_Paclitaxel_30min_R1 1 SLTVSDDAESSEPER 15 0 Q8NFC6;H0Y9Y2 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 SLTVS(0.001)DDAES(0.82)S(0.18)EPER 103.3 0.0038135 11960000 1445.2 1291 1551.7 1679.2 1274.3 1095.4 1791.6 1761.7 1299.1 2011.3 TRUE FALSE 1465.437259 1431.955746 1159.954144 1571.503628 1447.881234 1289.65381 2131.546747 1612.032589 1423.88436 1601.395956 0.915099887 0.894192183 0.724339374 0.981333581 0.904136937 0.805331002 1.331055408 1.0066421 0.889151964 1 10.64511435 SLVGS(ph)WLK ddPTM_K562_Paclitaxel_30min_R1 1 SLVGSWLK 8 0 B0QY16;Q6ICG6-3;Q6ICG6;Q6ICG6-2 B0QY16 KIAA0930 Uncharacterized protein KIAA0930 1 SLVGS(1)WLK 82.417 0.028454 2965300 1422.4 1132.9 1490.3 1067 1315.6 1054.2 1160.4 1547.7 1361.5 1703 TRUE FALSE 1442.317988 1256.593853 1114.055333 998.5673957 1494.806993 1241.147568 1380.579842 1416.213225 1492.278158 1355.927665 1.063713077 0.926741068 0.821618558 0.736445919 1.102423847 0.915349395 1.018181041 1.044460749 1.100558825 1 10.4050645 -7.472504477 1.192010238 1.050039922 0.902525192 0.232307585 0.101222653 0.689935253 2.006665901 0.05975324 0.044498388 3.37E-08 7.472504477 -0.14751473 SLVHRLS(ph)DGDMTSALR ddPTM_K562_Paclitaxel_30min_R1 2 SLVHRLSDGDMTSALR 16 1 A0A0U1RQJ8;Q8WXE1-5;Q8WXE1-3;Q8WXE1-2;Q8WXE1 A0A0U1RQJ8 ATRIP ATR-interacting protein 1 SLVHRLS(0.999)DGDMT(0.001)SALR;SLVHRLS(0.93)DGDMT(0.056)S(0.014)ALR 140.96 4.77E-08 41522000 1806.6 1856.89 1986.84 1863.4 1697.88 1829.88 1480.29 2287.08 2127.33 1769.15 TRUE FALSE 1831.897974 2059.63153 1485.237669 1743.889864 1929.160001 2154.383525 1761.1673 2092.778278 2331.669552 1408.596259 1.300513161 1.462187278 1.054409778 1.23803386 1.369562065 1.529454243 1.250299572 1.485719038 1.655314315 1 10.46004244 -6.881918332 5.072056305 1.410295483 1.263786438 0.076766585 0.189563104 0.478772052 19.30265283 0.058358086 0.066771582 1.31E-07 6.881918332 -0.146509045 SLWS(ph)RNK ddPTM_K562_Paclitaxel_30min_R1 1 SLWSRNK 7 1 Q16880 Q16880 UGT8 2-hydroxyacylsphingosine 1-beta-galactosyltransferase 1 SLWS(1)RNK 75.311 0.028749 5528200 205.39 242.52 331.13 189.12 304.36 218.17 38.935 237.1 201.11 222.23 TRUE FALSE 208.2660937 268.9991537 247.5321361 176.9906897 345.8189849 256.8593862 46.322713 216.9568751 220.4275141 176.939404 1.17704756 1.520289702 1.398965581 1.000289849 1.954448681 1.451679956 0.26179987 1.226164835 1.24577968 1 7.467111559 SLYAS(ph)SPGGVYATR ddPTM_K562_Paclitaxel_30min_R1 3 SLYASSPGGVYATR 14 0 P08670;B0YJC4;A0A1B0GVG8;A0A1B0GTT5 P08670 VIM Vimentin 1 S(0.002)LYAS(0.918)S(0.079)PGGVYATR;SLYAS(0.5)S(0.5)PGGVYATR;SLY(0.003)AS(0.499)S(0.499)PGGVYATR 225.29 4.93E-26 4080090000 8003.68 7562.6 10687.4 8364.2 6751.8 6713.6 7640.2 8778 7795.3 9254.4 TRUE FALSE 8115.756213 8388.310243 7989.23369 7827.757649 7671.509469 7904.162696 9089.888065 8032.254109 8544.073395 7368.3482 1.101434948 1.138424789 1.084263864 1.062349042 1.041143722 1.072718401 1.233639863 1.090102407 1.159564283 1 12.84712552 SLYASS(ph)PGGVYATR ddPTM_K562_Paclitaxel_30min_R1 1 SLYASSPGGVYATR 14 0 P08670;B0YJC4;A0A1B0GVG8;A0A1B0GTT5 P08670 VIM Vimentin 1 SLYAS(0.226)S(0.774)PGGVYATR 196.37 8.08E-09 781880000 4343.1 4147.6 4975 4738.5 4124.1 4115.9 3605 4502.3 4196.4 4619.5 TRUE FALSE 4403.9168 4600.448994 3718.99972 4434.593819 4685.872242 4845.797075 4289.029931 4119.801513 4599.48297 3678.043364 1.197353148 1.250787046 1.011135365 1.205693729 1.274012234 1.317493187 1.166117282 1.120106835 1.2505244 1 11.84472277 -11.1536922 6.015070636 0.999998394 1.197794569 0.345432145 0.082260935 1.85E-06 2.61E-07 0.083351078 0.020215442 7.02E-12 11.1536922 0.197796175 SLYASSPGGVYAT(ph)RSSAVR ddPTM_K562_Paclitaxel_30min_R1 1 SLYASSPGGVYATRSSAVR 19 1 P08670;B0YJC4;A0A1B0GVG8;A0A1B0GTT5 P08670 VIM Vimentin 1 SLYASSPGGVY(0.002)AT(0.333)RS(0.333)S(0.333)AVR 93.226 0.0076491 17960000 453.85 268.18 505.68 384.44 339.65 321.89 316.48 250.64 566.13 308.9 TRUE FALSE 460.2053002 297.4607993 378.0148298 359.7837391 385.9160803 378.9726719 376.5304279 229.3465676 620.509316 245.9460104 1.871163917 1.20945568 1.536982971 1.462856578 1.569108926 1.540877493 1.530947492 0.932507777 2.522949305 1 7.942197843 SLYASSPGGVYATRSS(ph)AVR ddPTM_K562_Paclitaxel_30min_R1 1 SLYASSPGGVYATRSSAVR 19 1 P08670;B0YJC4;A0A1B0GVG8;A0A1B0GTT5 P08670 VIM Vimentin 1 SLYASSPGGVY(0.008)AT(0.014)RS(0.167)S(0.812)AVR 69.071 0.014326 22716000 889.57 537.06 923.19 824.47 533.95 430.75 774.04 641.11 791.83 907.67 TRUE FALSE 902.0267246 595.698027 690.1192666 771.5921844 606.6830298 507.1374645 920.9100492 586.6437038 867.8888095 722.6863558 1.248157956 0.82428293 0.954936068 1.067672273 0.839483166 0.701739365 1.274287306 0.811754227 1.200920431 1 9.497225846 -10.94958411 7.85385537 1 0.977760486 0 0.191277313 2.38E-10 1.40E-25 0.174613801 0.042350067 1.12E-11 10.94958411 -0.022239514 SLYESFVSS(ph)SDRLR ddPTM_K562_Paclitaxel_30min_R1 1 SLYESFVSSSDRLR 14 1 A2ABK4;A0A0A0MT02;P18615;P18615-3 A2ABK4 NELFE Negative elongation factor E 1 SLYESFVS(0.187)S(0.806)S(0.006)DRLR 104.16 0.0034994 6622900 685.34 669.7 681.63 789.82 678.64 543.68 654.95 764.01 665.45 777.18 TRUE FALSE 694.9368745 742.8201108 509.5440762 739.1644803 771.0822575 640.0940144 779.2233434 699.1025817 729.3694458 618.7902894 1.123057175 1.200439185 0.823451959 1.19453148 1.246112408 1.034428021 1.259268862 1.129789193 1.178702152 1 9.273306747 SMAALT(ph)VMAAAPAGMK ddPTM_K562_Paclitaxel_30min_R1 2 SMAALTVMAAAPAGMK 16 0 H0YLX2;A0A669KBM4;Q2KHR2-2;Q2KHR2 H0YLX2 RFX7 DNA-binding protein RFX7 1 S(0.001)MAALT(0.999)VMAAAPAGMK;SMAALT(1)VMAAAPAGMK 87.863 0.010324 12259700 0 0 71.969 58.886 0 0 0 0 0 0 TRUE FALSE 0 0 53.79953585 55.10931552 0 0 0 0 0 0 0 SMDSYLNQSYGMDNHS(ph)GGGGGSR ddPTM_K562_Paclitaxel_30min_R1 1 SMDSYLNQSYGMDNHSGGGGGSR 23 0 Q5BKZ1;Q5BKZ1-2 Q5BKZ1 ZNF326 DBIRD complex subunit ZNF326 1 SMDSYLNQS(0.022)Y(0.012)GMDNHS(0.837)GGGGGS(0.129)R 90.454 0.00022258 24415000 747.06 641.3 722.02 608.01 615.54 603.67 636.87 800.51 649.7 1048.3 TRUE FALSE 757.5211449 711.3193027 539.7371212 569.01496 699.3869692 710.7223986 757.7127578 732.5016789 712.1065879 834.6558846 0.907584981 0.852230621 0.646658259 0.681735995 0.837934509 0.851515471 0.907814552 0.877609195 0.853173866 1 9.70503771 -7.201818335 2.453957546 0.895301426 0.769743944 0.348178245 0.080348271 0.382032047 4.521280343 0.032399487 0.031162877 6.28E-08 7.201818335 -0.125557483 SMGSQEDDSGNKPSSYS(ph) ddPTM_K562_Paclitaxel_30min_R1 2 SMGSQEDDSGNKPSSYS 17 1 H7C3P9;Q9UNS2-2;Q9UNS2 H7C3P9 COPS3 COP9 signalosome complex subunit 3 1 SMGSQEDDSGNKPS(0.035)S(0.204)YS(0.761);SMGSQEDDSGNKPS(0.054)S(0.041)Y(0.342)S(0.563) 157.73 3.92E-07 136508000 7751.6 6419.3 12536.8 8626.1 5912.9 6040.9 6301.7 8627.2 7586.8 10031.1 TRUE FALSE 7860.146316 7120.180883 9371.729787 8072.860555 6718.337086 7112.168797 7497.414678 7894.265511 8315.546039 7986.756314 0.984147507 0.891498451 1.173408756 1.010780877 0.841184684 0.89049528 0.938730867 0.988419479 1.041166866 1 12.96339398 -4.838244625 18.52245382 0.971933011 13.09227445 0 0.089024631 8147.657618 925603.183 0.022862021 33280.69855 1.45E-05 4.838244625 12.12034144 SMGTGDTPGLEVPS(ph)SPLR ddPTM_K562_Paclitaxel_30min_R1 2 SMGTGDTPGLEVPSSPLR 18 0 C9J0I9;Q86WB0-2;Q86WB0 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 SMGTGDTPGLEVPS(0.5)S(0.5)PLR;SMGTGDTPGLEVPS(0.5)S(0.5)PLR 120.99 0.00010728 98333000 8493.1 7602 9061.3 8538.2 7744.4 7021.3 6595.9 8299.5 7689.2 9778.1 TRUE FALSE 8612.029603 8432.012068 6773.662746 7990.598068 8799.318394 8266.428971 7847.437592 7594.405671 8427.782016 7785.317853 1.106188568 1.083065872 0.87005603 1.026367609 1.130245233 1.061797235 1.007979088 0.975477921 1.082522535 1 12.92654023 -10.80837698 0.004260695 7.50E-05 2.030757056 0.023878435 0.071382674 173097.9666 151.6731442 36993.42067 35304.44054 1.55E-11 10.80837698 2.030682074 SMGTGDTPGLEVPS(ph)SPLRK ddPTM_K562_Paclitaxel_30min_R1 2 SMGTGDTPGLEVPSSPLRK 19 1 C9J0I9;Q86WB0-2;Q86WB0 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 SMGTGDTPGLEVPS(0.5)S(0.5)PLRK;SMGTGDTPGLEVPS(0.578)S(0.422)PLRK 140.56 4.08E-13 389232000 3590.1 3230.2 5965.4 3859 3009 2580.8 2740.9 4043.6 3512.3 4619.6 TRUE FALSE 3640.372476 3582.88416 4459.360991 3611.501012 3418.876743 3038.468644 3260.971467 3700.070941 3849.672108 3678.122984 0.989736475 0.974106678 1.212401274 0.981886965 0.929516701 0.826092183 0.886585761 1.005967162 1.046640399 1 11.844754 -6.511467307 24.22582973 0.941566134 1.058094016 0.251202357 0.084048932 505.9637699 1074132.904 0.025811644 0.035889594 3.08E-07 6.511467307 0.116527882 SMGTGDTPGLEVPSS(ph)PLR ddPTM_K562_Paclitaxel_30min_R1 5 SMGTGDTPGLEVPSSPLR 18 0 C9J0I9;Q86WB0-2;Q86WB0 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 SMGTGDTPGLEVPS(0.225)S(0.774)PLR;SMGTGDTPGLEVPS(0.184)S(0.816)PLR;SMGTGDTPGLEVPS(0.031)S(0.969)PLR;SMGTGDTPGLEVPS(0.052)S(0.948)PLR;SMGTGDTPGLEVPS(0.019)S(0.981)PLR 274.08 9.95E-115 893388000 13786.6 12912.7 16072.4 14530.4 13638.2 12561 13214.5 14841.2 14516.1 16048.8 TRUE FALSE 13979.65494 14322.55225 12014.72384 13598.48518 15495.95374 14788.51698 15721.88239 13580.34742 15910.43626 12778.04575 1.094037008 1.120871887 0.940263016 1.064206957 1.212701382 1.157337927 1.230382384 1.06278751 1.245138464 1 13.64137959 -6.657420045 7.18328698 1.158525451 1.049745114 0.24281599 0.083042744 0.292006112 17.90171431 0.023571872 0.030443519 2.20E-07 6.657420045 -0.108780337 SMGTGDTPGLEVPSS(ph)PLRK ddPTM_K562_Paclitaxel_30min_R1 5 SMGTGDTPGLEVPSSPLRK 19 1 C9J0I9;Q86WB0-2;Q86WB0 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 S(0.001)MGTGDT(0.04)PGLEVPS(0.412)S(0.547)PLRK;SMGTGDTPGLEVPS(0.455)S(0.545)PLRK;SMGTGDTPGLEVPS(0.189)S(0.811)PLRK;SMGTGDTPGLEVPS(0.235)S(0.765)PLRK;SMGTGDTPGLEVPS(0.138)S(0.862)PLRK 160.05 1.41E-12 1111580000 11685.9 10564.1 19113.1 12392.4 10540.2 8728.9 8271.9 12508.5 11227.2 14699.6 TRUE FALSE 11849.53865 11717.52416 14287.76152 11597.60693 11975.95369 10276.84786 9841.449843 11445.82485 12305.62272 11703.81345 1.012451087 1.001171474 1.220778302 0.990925477 1.02325227 0.878076868 0.840875488 0.977956877 1.05141993 1 13.51469106 -6.816680751 2.383813262 0.94387354 1.069734318 0.269220508 0.082367218 0.376104453 4.375454836 0.028924231 0.035498893 1.53E-07 6.816680751 0.125860778 SMMS(ph)PMAER ddPTM_K562_Paclitaxel_30min_R1 3 SMMSPMAER 9 0 P18583-6;P18583-2;P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;H7C1M2 P18583-6 SON Protein SON 1 S(0.005)MMS(0.995)PMAER;S(0.018)MMS(0.982)PMAER;S(0.056)MMS(0.944)PMAER 117.52 0.0034945 87463000 2519.96 2037.32 2770.16 2512.19 2190.23 2021.23 2210.12 2439.11 2087.54 2388.48 TRUE FALSE 2555.247215 2259.761487 2070.798847 2351.069378 2488.576407 2379.666761 2629.478732 2231.892381 2288.057544 1901.706465 1.343660161 1.188280909 1.088916132 1.236294571 1.308601749 1.251332319 1.382694323 1.173626121 1.203160207 1 10.89307886 -9.28742445 1.58483447 1.000731537 1.246946799 0.460532685 0.080400735 1.056900936 4.262472673 0.081408131 0.023427801 5.16E-10 9.28742445 0.246215262 SMNPNVSMVSSASS(ph)SPSSSR ddPTM_K562_Paclitaxel_30min_R1 1 SMNPNVSMVSSASSSPSSSR 20 0 C9JR56;Q9UPW6-2;Q9UPW6 C9JR56 SATB2 DNA-binding protein SATB;DNA-binding protein SATB2 1 SMNPNVSMVSSAS(0.001)S(0.5)S(0.5)PSSSR 227.36 5.34E-38 51907000 2838.2 2801.9 4001.1 4066.2 3364.7 2480.1 2767.7 3263 2841.9 3530.1 TRUE FALSE 2877.943557 3107.820917 2990.97282 3805.412132 3823.029105 2919.910913 3292.856627 2985.787783 3114.877193 2810.663682 1.023937362 1.105724935 1.064151801 1.353919416 1.360187321 1.038868838 1.171558393 1.062307028 1.108235472 1 11.45669512 -8.662225039 0.997069326 1.01412436 1.168693898 0.156674701 0.112949175 1.021226286 2.029202259 0.114978453 0.040776431 2.18E-09 8.662225039 0.154569538 SMNPNVSMVSSASSS(ph)PSSSR ddPTM_K562_Paclitaxel_30min_R1 4 SMNPNVSMVSSASSSPSSSR 20 0 C9JR56;Q9UPW6-2;Q9UPW6 C9JR56 SATB2 DNA-binding protein SATB;DNA-binding protein SATB2 1 SMNPNVSMVS(0.021)S(0.021)AS(0.021)S(0.113)S(0.626)PS(0.113)S(0.021)S(0.063)R;SMNPNVSMVSSASS(0.008)S(0.992)PSSSR;SMNPNVSMVS(0.012)S(0.006)AS(0.072)S(0.037)S(0.872)PS(0.001)SSR;SMNPNVSMVSS(0.001)AS(0.037)S(0.109)S(0.845)PS(0.003)S(0.003)S(0.001)R 322.22 2.49E-265 113523000 8384.8 7672 10773 9129.8 8634.19 7886.76 8073.3 8990.2 8097.72 9414.8 TRUE FALSE 8502.213069 8509.654905 8053.222911 8544.255491 9810.312856 9285.36615 9605.16653 8226.426395 8875.542188 7496.058592 1.134224468 1.135217235 1.074327637 1.139833072 1.308729479 1.238699783 1.281362253 1.097433577 1.184027857 1 12.87191651 -6.538251592 24.99694254 1.199855325 1.115057136 0.109968978 0.085511072 412.9197057 671422.5515 0.024919465 0.032181766 2.90E-07 6.538251592 -0.084798189 SMQQLDPS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 2 SMQQLDPSPAR 11 0 Q9H410-4;Q9H410;Q5JW54;Q9H410-3;Q9H410-2 Q9H410-4 DSN1 Kinetochore-associated protein DSN1 homolog 1 SMQQLDPS(1)PAR;SMQQLDPS(1)PAR 108.23 0.0058285 71216000 6437.9 5612.1 7335.9 6719.8 5871.8 5831 5733.7 6630.9 6223.1 6674.8 TRUE FALSE 6528.050463 6224.848057 5483.861316 6288.822105 6671.63857 6865.045979 6821.639643 6067.563656 6820.856561 5314.472096 1.228353512 1.171301297 1.031873198 1.183339002 1.255371832 1.291764423 1.28359685 1.141705808 1.283449501 1 12.37571068 -5.236695944 20.73751444 1.191089286 1.228353919 0.012610825 0.098036231 4502.030098 3772535.453 0.024779925 1.04936417 5.80E-06 5.236695944 0.037264633 SMS(ph)APSDLEMIGNEDLEFTR ddPTM_K562_Paclitaxel_30min_R1 1 SMSAPSDLEMIGNEDLEFTR 20 0 F8VWT9;J3KPF0;Q9Y4D8-2;Q9Y4D8-4;Q9Y4D8 F8VWT9 HECTD4 Probable E3 ubiquitin-protein ligase HECTD4 1 S(0.01)MS(0.495)APS(0.495)DLEMIGNEDLEFTR 184.83 2.30E-16 31386000 1635.7 1678.4 1912.3 1666.1 1552.3 1445.1 1279 1673.4 1517.7 2015.7 TRUE FALSE 1658.604847 1861.653388 1429.516214 1559.243803 1763.749541 1701.368195 1521.683573 1531.234225 1663.481866 1604.899234 1.033463542 1.15998148 0.89072023 0.971552463 1.098978368 1.060109046 0.948148981 0.954099917 1.036502374 1 10.648267 -7.75663807 24.99984402 0.980862811 1.034802178 0.10955258 0.071020597 289.0960942 1505296.052 0.029152494 0.021836503 1.75E-08 7.75663807 0.053939368 SMS(ph)APVIFDR ddPTM_K562_Paclitaxel_30min_R1 4 SMSAPVIFDR 10 0 O60749;D6RC15 O60749 SNX2 Sorting nexin-2 1 S(0.004)MS(0.996)APVIFDR;S(0.002)MS(0.998)APVIFDR;S(0.278)MS(0.722)APVIFDR;S(0.033)MS(0.967)APVIFDR 164.81 0.00020712 272994000 6805.36 6041.83 7931.6 7262.7 5762.92 6824.57 6908.55 7031.97 5504.68 8952.5 TRUE FALSE 6900.656036 6701.497432 5929.169483 6796.902929 6547.927271 8034.811668 8219.411297 6434.560256 6033.42911 7127.975586 0.96810882 0.940168404 0.83181675 0.95355306 0.918623695 1.127222108 1.153120013 0.902719177 0.846443571 1 12.79927668 -7.111257796 21.35330677 1.010571168 0.920090147 0.170143256 0.091778854 15.65719223 2978.18199 0.033180625 0.033180689 7.74E-08 7.111257796 -0.090481022 SMSAPS(ph)DLEMIGNEDLEFTR ddPTM_K562_Paclitaxel_30min_R1 1 SMSAPSDLEMIGNEDLEFTR 20 0 F8VWT9;J3KPF0;Q9Y4D8-2;Q9Y4D8-4;Q9Y4D8 F8VWT9 HECTD4 Probable E3 ubiquitin-protein ligase HECTD4 1 S(0.009)MS(0.153)APS(0.838)DLEMIGNEDLEFTR 100.07 0.00070739 27480000 1104.9 913.87 1350.5 1141 1330 786 911.1 1312.5 924.58 1480.4 TRUE FALSE 1120.372009 1013.649417 1009.549572 1067.821367 1511.168517 925.386064 1083.976469 1200.994933 1013.39004 1178.693667 0.950520088 0.859976977 0.856498682 0.905936289 1.282070617 0.785094626 0.919642227 1.018920323 0.859756923 1 10.20297311 -6.544499416 24.99893763 0.977641677 0.885283009 0.100172501 0.12447519 551.9215315 638156.5407 0.036837268 0.047560504 2.85E-07 6.544499416 -0.092358668 SMSQVDVDS(ph)GIENMEVDENDRR ddPTM_K562_Paclitaxel_30min_R1 5 SMSQVDVDSGIENMEVDENDRR 22 1 O95155;O95155-4;O95155-2 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 S(0.001)MS(0.003)QVDVDS(0.996)GIENMEVDENDRR;SMSQVDVDS(1)GIENMEVDENDRR;SMSQVDVDS(1)GIENMEVDENDRR;S(0.001)MS(0.001)QVDVDS(0.998)GIENMEVDENDRR;SMS(0.001)QVDVDS(0.999)GIENMEVDENDRR 128.52 2.95E-08 278603000 8925.52 8133.84 9265.68 9925.38 7962.98 8437.78 8404.66 10069.31 9270.3 11154.45 TRUE FALSE 9050.504818 9021.920158 6926.444488 9288.810551 9047.67269 9934.101811 9999.40036 9213.859265 10160.75374 8881.166967 1.019067072 1.015848502 0.779902519 1.045899777 1.018748181 1.118558163 1.125910637 1.037460426 1.144078675 1 13.11653354 -6.500756128 24.33980224 1.076402094 0.94050874 0.393906659 0.075583005 552.8007304 608203.6776 0.021395832 0.031414435 3.16E-07 6.500756128 -0.135893354 SMSSIPPYPASSLAS(ph)SSPPGSGR ddPTM_K562_Paclitaxel_30min_R1 1 SMSSIPPYPASSLASSSPPGSGR 23 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 SMSSIPPYPAS(0.001)S(0.001)LAS(0.333)S(0.333)S(0.333)PPGSGR 191.71 2.63E-24 33460000 5072.3 5237.9 5658.9 5911.7 5130.8 4769.6 4892.4 5828.8 5076.9 6075.2 TRUE FALSE 5143.327849 5809.791635 4230.240707 5532.550022 5829.701825 5615.421591 5820.70736 5333.607058 5564.558929 4837.070905 1.063314545 1.201097058 0.874545937 1.143781046 1.205213225 1.16091364 1.203353739 1.102652238 1.150398462 1 12.23991797 SMSSIPPYPASSLASSS(ph)PPGSGR ddPTM_K562_Paclitaxel_30min_R1 1 SMSSIPPYPASSLASSSPPGSGR 23 0 A0A2R8Y7R9;Q13136-2;Q13136;H0YDW2 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 SMSSIPPY(0.003)PAS(0.002)S(0.002)LAS(0.044)S(0.044)S(0.696)PPGS(0.21)GR 181.6 3.35E-23 26846000 7288.5 7577.5 9451.9 9179 7510.7 7213.2 7979.4 8349.5 7722.2 10018 TRUE FALSE 7390.561487 8404.837075 7065.650945 8590.300024 8533.784497 8492.359742 9493.449495 7640.157859 8463.951814 7976.326101 0.926562103 1.05372285 0.885827743 1.076974526 1.069889118 1.064695655 1.190203281 0.95785425 1.061134124 1 12.96150868 -6.29005515 24.79511703 1.064370642 0.965206078 0.324186093 0.068667727 746.1546567 646529.5285 0.018892031 0.028027119 5.13E-07 6.29005515 -0.099164564 SMYEEEINETR ddPTM_K562_Paclitaxel_30min_R1 1 SMYEEEINETR 11 0 P20700;E9PBF6;A0A0D9SFE5 P20700 LMNB1 Lamin-B1 0 127.83 1.81E-09 0 469.12 395.86 533.96 511.47 587.07 359.92 518.91 584.57 745.78 806.69 FALSE TRUE 475.6891274 439.0813335 399.1551941 478.6666035 667.0388732 423.7467585 617.3704636 534.9071297 817.4155012 642.2861352 0.740618708 0.683622625 0.621460082 0.745254455 1.03853849 0.659747635 0.961207832 0.832817494 1.272665649 1 9.327072344 -7.739766181 0.583116204 1.086160517 0.684119928 0.473442782 0.142950928 0.74407877 0.522421018 0.128389826 0.099547017 1.82E-08 7.739766181 -0.402040589 SMYEEEINETRR ddPTM_K562_Paclitaxel_30min_R1 1 SMYEEEINETRR 12 1 P20700;E9PBF6;A0A0D9SFE5 P20700 LMNB1 Lamin-B1 0 97.163 0.017032 19470000 613.87 857.55 703.97 697.53 635.6 710.79 791.83 846.32 814.12 609.92 FALSE TRUE 622.466074 951.180209 526.2440669 652.7935478 722.1794808 836.8386265 942.0756089 774.4198334 892.3198636 485.6179692 1.281801979 1.958700603 1.083658555 1.34425328 1.487135004 1.723244772 1.93995212 1.594710004 1.837493503 1 8.923677996 -7.146156007 4.737209069 1.675414007 1.430750702 0.070337404 0.314767797 0.511334589 17.81339187 0.10202032 0.102255964 7.14E-08 7.146156007 -0.244663306 SNDRNS(ph)MDIQCEVDALLER ddPTM_K562_Paclitaxel_30min_R1 3 SNDRNSMDIQCEVDALLER 19 1 Q02241-2;A0A2U3TZL8;Q02241;H7BYN4;A0A2R8Y531;H0YME6 Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 S(0.12)NDRNS(0.88)MDIQCEVDALLER;SNDRNS(1)MDIQCEVDALLER;S(0.318)NDRNS(0.682)MDIQCEVDALLER 103.71 0.00051753 121540000 3390.21 3348.01 4617.5 4492.8 3223.41 2868.8 2977.55 4074.5 3536.47 4477.4 TRUE FALSE 3437.6834 3713.557054 3451.755016 4204.651917 3662.493015 3377.5414 3542.524569 3728.345793 3876.163745 3564.903422 0.964313192 1.041699203 0.968260457 1.179457455 1.027375101 0.947442609 0.993722452 1.045847629 1.087312414 1 11.79964728 -6.99903549 24.99998958 1.013186832 1.042373925 0.027033156 0.064664535 134.7532708 3492575.941 0.02094643 0.023566324 1.00E-07 6.99903549 0.029187093 SNGSLHTLACHPPLS(ph)PGPR ddPTM_K562_Paclitaxel_30min_R1 1 SNGSLHTLACHPPLSPGPR 19 0 O15049 O15049 N4BP3 NEDD4-binding protein 3 1 SNGSLHTLACHPPLS(1)PGPR 111.24 0.00026497 9821300 947.94 887.87 998.81 848.56 658.47 745.77 459.11 641.07 794.23 910.31 TRUE FALSE 961.2140846 984.8106492 746.6480624 794.1371596 748.164762 878.0218384 546.2237258 586.6071021 870.5193402 724.7883223 1.32619974 1.358756231 1.030160171 1.095681505 1.032252782 1.211418301 0.753632073 0.809349549 1.201067006 1 9.501415901 -5.430429034 0.622928738 0.965525622 1.586106759 0.421830451 0.144549284 2.759404864 0.93935271 0.074136535 1.192096216 3.71E-06 5.430429034 0.620581137 SNLDEEVNVIPPHT(ph)PVR ddPTM_K562_Paclitaxel_30min_R1 2 SNLDEEVNVIPPHTPVR 17 0 P06400;A0A3B3IS71 P06400 RB1 Retinoblastoma-associated protein 1 SNLDEEVNVIPPHT(1)PVR;SNLDEEVNVIPPHT(1)PVR 137.72 3.10E-08 23814000 4844.2 4338.1 5165.3 4269.7 3614.7 4126.2 4266.8 5897.8 4369.9 6729.6 TRUE FALSE 4912.033746 4811.748429 3861.256131 3995.860552 4107.083337 4857.923635 5076.403026 5396.745077 4789.64842 5358.103826 0.916748519 0.89803195 0.720638542 0.745760195 0.766518058 0.906649776 0.947425282 1.00721174 0.893907355 1 12.38750682 -7.476240612 3.451394899 0.961091162 0.806433146 0.554770639 0.064693449 0.204714898 4.93768893 0.027394179 0.02264841 3.34E-08 7.476240612 -0.154658017 SNMS(ph)PHGLPAR ddPTM_K562_Paclitaxel_30min_R1 2 SNMSPHGLPAR 11 0 H0Y4T7;E7ESY4;Q13330-3;Q13330 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 SNMS(1)PHGLPAR;SNMS(1)PHGLPAR 91.712 0.011745 79752000 4022.5 3697.7 5012.1 4570.5 3997.6 3793.4 3701.9 4098.1 3788.7 5342.6 TRUE FALSE 4078.82741 4101.427391 3746.733366 4277.368587 4542.1408 4466.106228 4404.3162 3749.940825 4152.621563 4253.775187 0.95887235 0.964185273 0.880801923 1.005546461 1.067790515 1.049915906 1.035389978 0.88155595 0.97622027 1 12.05452807 -4.046242921 22.97630851 0.981833941 0.943998404 0 0.060759849 0 0 0.015214405 0 8.99E-05 4.046242921 -0.037835537 SNPTPMEPT(ph)SPGEHQQNSK ddPTM_K562_Paclitaxel_30min_R1 1 SNPTPMEPTSPGEHQQNSK 19 0 E7EUR8;A0A1B0GVL4;P78312-4;P78312-6;P78312-2;P78312-5;P78312 E7EUR8 FAM193A Protein FAM193A 1 SNPT(0.006)PMEPT(0.497)S(0.497)PGEHQQNSK 83.891 0.0047562 30209000 1804.2 1679.6 3459.8 2527.9 1736.3 1170.8 1196.7 1812.9 1857.6 2276.3 TRUE FALSE 1829.464366 1862.984408 2586.3307 2365.771808 1972.813456 1378.424941 1423.767578 1658.882829 2036.03078 1812.388811 1.009421574 1.027916525 1.427028618 1.305333488 1.088515579 0.760556969 0.785575131 0.915301849 1.123396243 1 10.82367677 -7.035713578 6.574883989 0.904672327 1.197855484 0.435060152 0.148503927 0.200482413 26.84205571 0.052892458 0.054252962 9.21E-08 7.035713578 0.293183157 SNPTPMEPTS(ph)PGEHQQNSK ddPTM_K562_Paclitaxel_30min_R1 1 SNPTPMEPTSPGEHQQNSK 19 0 E7EUR8;A0A1B0GVL4;P78312-4;P78312-6;P78312-2;P78312-5;P78312 E7EUR8 FAM193A Protein FAM193A 1 SNPT(0.002)PMEPT(0.064)S(0.934)PGEHQQNSK 95.554 0.00085318 23709000 2115.4 1550.7 2972.9 1783.7 1818.5 1488.3 1340 2021 1601.3 2500.3 TRUE FALSE 2145.022127 1720.01067 2222.354627 1669.301466 2066.210487 1752.229108 1594.258005 1849.303435 1755.11202 1990.737488 1.077501248 0.864006772 1.116347404 0.8385342 1.037912081 0.880190944 0.800837888 0.928953941 0.881639106 1 10.95908727 -7.284446979 24.03939749 0.887791076 0.978988529 0.177275051 0.093238468 810.4916528 846834.9853 0.030603799 0.027010878 5.19E-08 7.284446979 0.091197453 SNPVIPIS(ph)SSNHSARSPFEGAVTESQSLFSDNFR ddPTM_K562_Paclitaxel_30min_R1 1 SNPVIPISSSNHSARSPFEGAVTESQSLFSDNFR 34 1 O95628-3;O95628-2;O95628;O95628-8;O95628-4;O95628-7;O95628-9;O95628-10;O95628-6;O95628-5 O95628-3 CNOT4 CCR4-NOT transcription complex subunit 4 1 S(0.001)NPVIPIS(0.212)S(0.212)S(0.212)NHS(0.18)ARS(0.18)PFEGAVT(0.002)ESQSLFSDNFR 62.302 0.00021745 10737000 962.33 949.34 1085 872.42 938.79 937.54 1092.3 1135.2 831.36 1286.6 TRUE FALSE 975.805589 1052.992152 811.0783309 816.466886 1066.669092 1103.799555 1299.558223 1038.757674 911.2158426 1024.390214 0.952572151 1.02792094 0.791766965 0.797027222 1.041272239 1.077518645 1.268616398 1.014025379 0.889520253 1 10.00054966 -6.882641773 7.328042416 1.063777095 0.89533646 0.323327869 0.109719176 0.280909466 16.8948069 0.036887037 0.041936029 1.31E-07 6.882641773 -0.168440635 SNS(ph)APLIHGLSDTSPVFQAEAPSAR ddPTM_K562_Paclitaxel_30min_R1 4 SNSAPLIHGLSDTSPVFQAEAPSAR 25 0 Q96E09 Q96E09 FAM122A Protein FAM122A 1 S(0.207)NS(0.793)APLIHGLSDTSPVFQAEAPSAR;S(0.162)NS(0.838)APLIHGLSDTSPVFQAEAPSAR;S(0.291)NS(0.709)APLIHGLSDTSPVFQAEAPSAR;S(0.186)NS(0.814)APLIHGLSDTSPVFQAEAPSAR 137.67 6.10E-15 749274000 4845.1 5196.15 6576.5 5902.9 4696.28 4747.9 4634.44 6289.8 5387.57 6132.2 TRUE FALSE 4912.946348 5763.483229 4916.181238 5524.314414 5335.992845 5589.873401 5513.800797 5755.44223 5905.070171 4882.454274 1.006245235 1.180447969 1.006907789 1.131462601 1.092891514 1.144890067 1.129309255 1.178801051 1.209447102 1 12.25339082 -6.9486156 1.318972029 1.144699447 1.077837793 0.10367232 0.070457474 0.865283729 3.135420578 0.028128336 0.0333435 1.13E-07 6.9486156 -0.066861655 SNS(ph)FNNPLGNR ddPTM_K562_Paclitaxel_30min_R1 2 SNSFNNPLGNR 11 0 O95835-2;O95835 O95835-2 LATS1 Serine/threonine-protein kinase LATS1 1 S(0.003)NS(0.997)FNNPLGNR;SNS(1)FNNPLGNR 152 0.00052356 354640000 4147.6 3354.8 5638.4 4292.9 3618 3858.5 4188.8 5163.5 5228.3 5456.4 TRUE FALSE 4205.679196 3721.088409 4214.916185 4017.572608 4110.832853 4542.750799 4983.602933 4724.828445 5730.501576 4344.382685 0.968072912 0.85652869 0.970199103 0.924774105 0.946240963 1.045660829 1.147137187 1.08757188 1.319060035 1 12.08493548 -7.479716376 1.82401873 1.151075968 0.926119942 0.594143128 0.079877194 0.226764645 1.510466454 0.034312786 0.026782551 3.31E-08 7.479716376 -0.224956026 SNS(ph)GLATYSPPMGPVSER ddPTM_K562_Paclitaxel_30min_R1 2 SNSGLATYSPPMGPVSER 18 0 H0Y465;P21359-2;P21359-6;P21359;J3KSB5;P21359-4 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 S(0.051)NS(0.884)GLAT(0.016)Y(0.004)S(0.045)PPMGPVSER;S(0.006)NS(0.935)GLAT(0.023)Y(0.016)S(0.019)PPMGPVSER 125.03 5.13E-06 122924000 3630.9 3637.7 4839 4864.2 4309.3 3728.9 3267.5 4382.5 4178.4 4581.5 TRUE FALSE 3681.743802 4034.876388 3617.334602 4552.231983 4896.299617 4390.168059 3887.491068 4010.17927 4579.75399 3647.787785 1.00930866 1.106115987 0.991651602 1.247943206 1.342265479 1.203515204 1.065711959 1.09934555 1.255488054 1 11.83280609 -6.257545142 24.96692241 1.18140194 1.042734473 0.288084204 0.098514275 452.3896221 2900371.92 0.02827226 0.046764182 5.53E-07 6.257545142 -0.138667467 SNS(ph)GRELTDEEILASVMIK ddPTM_K562_Paclitaxel_30min_R1 1 SNSGRELTDEEILASVMIK 19 1 Q5JSH3-4;Q5JSH3-2;Q5JSH3;H7BY83 Q5JSH3-4 WDR44 WD repeat-containing protein 44 1 S(0.259)NS(0.735)GRELT(0.006)DEEILASVMIK 79.514 0.01721 4683700 1461.1 1592.1 2519.7 1949.6 1486.5 1299.1 1235.3 1731.8 1810.7 2082.6 TRUE FALSE 1481.559908 1765.930862 1883.570572 1824.561382 1688.986467 1529.477145 1469.691726 1584.67278 1984.625825 1658.164977 0.893493668 1.064991051 1.135936772 1.100349729 1.01858771 0.922391418 0.886336249 0.955678598 1.196880801 1 10.69537184 -6.999602709 24.10054976 0.981491953 1.056511196 0.061882172 0.097378424 21.31622665 1292794.6 0.031689499 0.035565961 1.00E-07 6.999602709 0.075019243 SNS(ph)GVRLDGYAR ddPTM_K562_Paclitaxel_30min_R1 1 SNSGVRLDGYAR 12 1 P46019;A6NIT2;A6NMN0;P46020-3;P46020-2;P46020 P46019 PHKA2;PHKA1 "Phosphorylase b kinase regulatory subunit alpha, liver isoform;Phosphorylase b kinase regulatory subunit alpha, skeletal muscle isoform" 1 SNS(1)GVRLDGYAR 103.83 0.024194 26887000 2388.9 2629.6 3319.9 2763.2 2292.4 2180.1 2341.9 3339.3 4342.6 3039.7 TRUE FALSE 2422.35197 2916.708621 2481.750185 2585.98072 2604.663691 2566.710125 2786.263299 3055.605622 4759.726133 2420.207471 1.000886081 1.205148176 1.025428693 1.06849547 1.076215044 1.060533097 1.151249772 1.262538711 1.966660375 1 11.24091501 -8.530642856 24.99971395 1.527086751 1.093338471 0.333207873 0.224063898 180.437893 580976.9379 0.136681189 0.051870388 2.95E-09 8.530642856 -0.43374828 SNS(ph)IQQMEQLNR ddPTM_K562_Paclitaxel_30min_R1 1 SNSIQQMEQLNR 12 0 A0A2R8YE75;A0A2R8Y6F3;Q9P2P5 A0A2R8YE75 HECW2 E3 ubiquitin-protein ligase HECW2 1 S(0.006)NS(0.994)IQQMEQLNR 89.43 0.018985 8704500 726.87 447 659.93 647.14 601.66 567.2 494.58 642.94 592.11 754.08 TRUE FALSE 737.0484226 495.8049717 493.3225096 605.6353369 683.6162782 667.7849561 588.4239731 588.3182339 648.9848111 600.3980821 1.227599562 0.82579373 0.821659036 1.008722971 1.138605033 1.112236991 0.980056384 0.979880269 1.080924191 1 9.229775558 -6.513850068 24.72643074 1.049755014 0.940111055 0.102435429 0.116075301 723.8244641 1982308.302 0.034017656 0.046423477 3.06E-07 6.513850068 -0.109643959 SNS(ph)IQQMEQLNRR ddPTM_K562_Paclitaxel_30min_R1 1 SNSIQQMEQLNRR 13 1 A0A2R8YE75;A0A2R8Y6F3;Q9P2P5 A0A2R8YE75 HECW2 E3 ubiquitin-protein ligase HECW2 1 S(0.003)NS(0.997)IQQMEQLNRR 97.767 0.018694 9541900 1186.1 1419.6 2035 1435.1 1366.1 1604.2 1377.2 1751.5 1429.1 1848.1 TRUE FALSE 1202.709059 1574.596729 1521.239081 1343.059109 1552.185948 1888.682346 1638.516511 1602.699142 1566.37144 1471.456206 0.817359739 1.070094185 1.033832387 0.912741476 1.054863843 1.283546421 1.113533997 1.089192554 1.064504288 1 10.52302889 -6.996150563 22.12593232 1.12185935 0.9733508 0.364922189 0.092974432 29.90002677 171848.6019 0.028846513 0.032499069 1.01E-07 6.996150563 -0.14850855 SNS(ph)PLPVPPSK ddPTM_K562_Paclitaxel_30min_R1 4 SNSPLPVPPSK 11 0 Q13247-3;Q13247 Q13247-3 SRSF6 Serine/arginine-rich splicing factor 6 1 S(0.001)NS(0.998)PLPVPPS(0.001)K;S(0.043)NS(0.928)PLPVPPS(0.029)K;SNS(1)PLPVPPSK;S(0.087)NS(0.913)PLPVPPSK 136.83 0.00077949 328728000 23435.3 20474.4 46908.4 29078.4 21384.8 17853.4 16213 25900.6 16873.1 29203.2 TRUE FALSE 23763.4665 22709.86423 35065.79426 27213.44157 24297.77181 21019.44982 19289.33211 23700.18236 18493.83665 23251.57181 1.022015488 0.976702324 1.50810425 1.170391481 1.044994807 0.904001243 0.829592609 1.019293773 0.795380063 1 14.50504063 -7.00997193 2.891910717 0.906736486 1.178354516 0.411279244 0.1462744 0.276015369 4.684100841 0.052394824 0.05657538 9.77E-08 7.00997193 0.27161803 SNS(ph)QSDSHDEEVSPTPPNPVVK ddPTM_K562_Paclitaxel_30min_R1 1 SNSQSDSHDEEVSPTPPNPVVK 22 0 C9J4C2;C9IZL8;C9JR00;C9JSK5;P31321 C9J4C2 PRKAR1B cAMP-dependent protein kinase type I-beta regulatory subunit 1 S(0.208)NS(0.562)QS(0.208)DS(0.022)HDEEVSPTPPNPVVK 73.839 0.0018895 10137000 1854.6 1710.3 3104 2318.1 1806 1645.7 1414 2100 1847.4 2668.4 TRUE FALSE 1880.570122 1897.036338 2320.35681 2169.427441 2052.007776 1937.541788 1682.299118 1921.591892 2024.851024 2124.578615 0.885149699 0.892900043 1.092149188 1.021109516 0.965842243 0.911965212 0.791827192 0.90445789 0.953060061 1 11.05296101 -7.266903315 4.505534168 0.897995974 0.977173825 0.122473399 0.074567682 0.362154086 19.77394843 0.027866296 0.025917362 5.41E-08 7.266903315 0.079177851 SNSQSDSHDEEVS(ph)PTPPNPVVK ddPTM_K562_Paclitaxel_30min_R1 1 SNSQSDSHDEEVSPTPPNPVVK 22 0 C9J4C2;C9IZL8;C9JR00;C9JSK5;P31321 C9J4C2 PRKAR1B cAMP-dependent protein kinase type I-beta regulatory subunit 1 SNSQSDSHDEEVS(0.969)PT(0.03)PPNPVVK 77.221 0.0083108 0 893.06 755.11 974.39 855.29 844.12 583.61 609.39 846.6 709.42 934.48 TRUE FALSE 905.5655953 837.5554634 728.3931934 800.4355275 959.1034351 687.1050392 725.0185713 774.6760457 777.5629608 744.0324631 1.217104952 1.125697473 0.978980393 1.075807263 1.289061274 0.923487984 0.974444809 1.041185814 1.045065907 1 9.539221759 -7.292420175 24.99992582 0.998011518 1.124468923 0.411426236 0.083306498 823.5191091 664535.0225 0.030989783 0.0273332 5.10E-08 7.292420175 0.126457406 SNSVGIQDAFNDGS(ph)DSTFQKR ddPTM_K562_Paclitaxel_30min_R1 1 SNSVGIQDAFNDGSDSTFQKR 21 1 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;A0A087WUV6 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 S(0.08)NS(0.366)VGIQDAFNDGS(0.554)DSTFQKR 56.529 0.020123 48305000 999.75 623.33 1253.2 729.12 679.07 734.33 489.01 915.19 1120.5 1293.4 TRUE FALSE 1013.749584 691.3872774 936.8141606 682.3575066 771.5708307 864.553115 581.7970947 837.4388971 1228.129032 1029.80437 0.984409869 0.6713773 0.909701093 0.662608867 0.749240199 0.83953141 0.564958852 0.813201926 1.192584793 1 10.00815458 -8.678140594 6.166733026 1.093206234 0.763609945 0.519629643 0.124006072 0.140811622 8.038134183 0.08251958 0.029832266 2.10E-09 8.678140594 -0.329596289 SNT(ph)LDIMDGR ddPTM_K562_Paclitaxel_30min_R1 2 SNTLDIMDGR 10 0 H0Y9X0;A0A286YEZ9;A0A2C9F2R7;O94915 H0Y9X0 FRYL Protein furry homolog-like 1 S(0.001)NT(0.999)LDIMDGR;SNT(1)LDIMDGR 128.22 0.0029055 21755000 4984.5 4525.3 7126.3 5533 4325.6 4046.3 4365.9 5781.1 5021.8 5986.7 TRUE FALSE 5054.298378 5019.387558 5327.177428 5178.138145 4914.819953 4763.854492 5194.306733 5289.959471 5504.166328 4766.607254 1.060355534 1.053031494 1.1176036 1.086336228 1.031093961 0.99942249 1.089728282 1.10979554 1.154734602 1 12.21874704 -7.979861461 24.9870801 1.099311459 1.059197748 0.079568531 0.046469791 483.8920912 600392.0548 0.01976585 0.013324524 1.05E-08 7.979861461 -0.040113711 SNVSS(ph)PATPTASSSSSTTPTR ddPTM_K562_Paclitaxel_30min_R1 2 SNVSSPATPTASSSSSTTPTR 21 0 A6NNK5;Q12888;Q12888-3;Q12888-2;H7BZY0 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 SNVS(0.029)S(0.796)PAT(0.104)PT(0.05)AS(0.014)S(0.004)S(0.001)SSTTPTR;SNVS(0.05)S(0.942)PAT(0.007)PT(0.001)ASSSSSTTPTR 182.98 1.33E-22 16330600 3846.3 3743 4864.2 4130.9 3376.5 3633.7 3312.9 4204.6 3563.5 4628.8 TRUE FALSE 3900.160067 4151.673398 3636.17255 3865.962563 3836.436465 4278.085675 3941.505481 3847.392986 3905.790097 3685.448019 1.058259416 1.126504397 0.986629721 1.048980353 1.040968817 1.16080478 1.069477974 1.043941731 1.059787054 1 11.84762429 -9.342910175 1.294287279 1.000329638 1.068838328 0.166447731 0.045098302 2.388571064 6.401801914 0.044468192 0.013357288 4.54E-10 9.342910175 0.06850869 SNVSSPAT(ph)PTASSSS(ph)STTPTR ddPTM_K562_Paclitaxel_30min_R1 1 SNVSSPATPTASSSSSTTPTR 21 0 A6NNK5;Q12888;Q12888-3;Q12888-2;H7BZY0 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 2 SNVSS(0.002)PAT(0.94)PT(0.044)AS(0.094)S(0.078)S(0.065)S(0.287)S(0.237)T(0.136)T(0.082)PT(0.035)R 116.65 4.47E-05 5591800 1927 2383.4 2651.5 2516.1 2245.1 2044 2027.6 2798.3 2342.8 2675 TRUE FALSE 1953.983945 2643.627672 1982.096032 2354.728608 2550.92063 2406.474701 2412.326515 2560.566949 2567.836408 2129.833532 0.917435056 1.24123676 0.93063425 1.105592795 1.197708925 1.129888635 1.13263618 1.202238067 1.205651226 1 11.05652496 -6.518738392 24.315007 1.153292456 1.045448499 0.202307737 0.099742534 190.4111465 1118230.731 0.02734108 0.036218609 3.03E-07 6.518738392 -0.107843957 SNVSSPAT(ph)PTASSSSSTT(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 1 SNVSSPATPTASSSSSTTPTR 21 0 A6NNK5;Q12888;Q12888-3;Q12888-2;H7BZY0 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 2 SNVS(0.008)S(0.055)PAT(0.682)PT(0.118)AS(0.116)S(0.115)S(0.115)S(0.114)S(0.114)T(0.089)T(0.405)PT(0.068)R 110.33 0.00097624 4847200 1491 1132.5 1863.4 1868.3 1507.1 1483.1 1572.2 1678.1 1644.3 2080.9 TRUE FALSE 1511.8786 1256.15018 1392.961624 1748.4756 1712.392535 1746.106961 1870.516743 1535.534931 1802.242362 1656.811438 0.912523034 0.758173291 0.840748435 1.055325646 1.033547027 1.053896009 1.128985894 0.926801262 1.087777595 1 10.6941937 -6.247512311 7.968963526 1.041837291 0.828726071 0.70032175 0.061007124 0.090986001 38.44518202 0.016056929 0.026734636 5.66E-07 6.247512311 -0.21311122 SNVSSPAT(ph)PTASSSSSTTPTRK ddPTM_K562_Paclitaxel_30min_R1 3 SNVSSPATPTASSSSSTTPTRK 22 1 A6NNK5;Q12888;Q12888-3;Q12888-2;H7BZY0 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 S(0.077)NVS(0.22)S(0.22)PAT(0.47)PT(0.012)ASSSSSTTPTRK;SNVS(0.001)S(0.12)PAT(0.796)PT(0.083)ASSSSSTTPTRK;SNVSS(0.006)PAT(0.992)PT(0.002)ASSSSSTTPTRK 133.24 3.95E-11 28358000 3654.59 3024.59 6040.52 4557.46 3451.98 3042.21 2633.25 4023.84 3404.36 4384.48 TRUE FALSE 3705.765535 3354.824965 4515.516018 4265.164914 3922.198119 3581.703229 3132.895441 3681.989676 3731.363989 3490.920569 1.061543929 0.961014408 1.293502939 1.221788015 1.123542642 1.026005364 0.897441056 1.054733158 1.068876795 1 11.76939182 -7.276306406 4.493956589 1.004350046 1.137571796 0.304234293 0.093126937 0.278646548 14.79708997 0.035903755 0.033054779 5.29E-08 7.276306406 0.13322175 SNVSSPATPTASSSSS(ph)TTPTRK ddPTM_K562_Paclitaxel_30min_R1 2 SNVSSPATPTASSSSSTTPTRK 22 1 A6NNK5;Q12888;Q12888-3;Q12888-2;H7BZY0 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 SNVSSPATPT(0.001)AS(0.012)S(0.008)S(0.022)S(0.097)S(0.286)T(0.286)T(0.286)PT(0.001)RK;SNVSSPATPTAS(0.161)S(0.113)S(0.08)S(0.057)S(0.195)T(0.195)T(0.195)PT(0.003)RK 104.55 9.37E-05 60425000 3706.52 3723.22 6464.2 3873.83 3384.39 2838.86 3021.79 4112.7 3317.33 4717.1 TRUE FALSE 3758.422716 4129.733751 4832.232762 3625.379882 3845.401216 3342.291961 3595.158878 3763.300464 3635.974369 3755.752431 1.000710985 1.099575605 1.286621749 0.965287236 1.023869727 0.889912747 0.957240645 1.002009726 0.968108105 1 11.87488625 -6.365818934 24.99999889 0.970511794 1.126080821 0.48980554 0.073217383 27.30945003 6530.096569 0.020878144 0.030967292 4.31E-07 6.365818934 0.155569027 SNVSSPATPTASSSSST(ph)TPTR ddPTM_K562_Paclitaxel_30min_R1 1 SNVSSPATPTASSSSSTTPTR 21 0 A6NNK5;Q12888;Q12888-3;Q12888-2;H7BZY0 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 SNVSSPATPTASSSS(0.001)S(0.019)T(0.49)T(0.49)PT(0.001)R 235.21 3.61E-54 18786000 4885.2 5167.9 6644.6 5645.2 5004.9 5010.6 4726.1 5715.2 4635.3 6540.2 TRUE FALSE 4953.607872 5732.148799 4967.088551 5283.142139 5686.652114 5899.159558 5622.852803 5229.658087 5080.541276 5207.30365 0.951280779 1.100790195 0.953869581 1.014563869 1.092053104 1.132862601 1.079801214 1.004292901 0.975656812 1 12.34632082 -2.02261425 22.19715038 1.035937406 0.005181344 0 0.062416909 0 0 0.014782588 0 0.009492612 2.02261425 -1.030756062 SNVSSPATPTASSSSST(ph)TPTRK ddPTM_K562_Paclitaxel_30min_R1 1 SNVSSPATPTASSSSSTTPTRK 22 1 A6NNK5;Q12888;Q12888-3;Q12888-2;H7BZY0 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 SNVSSPATPTAS(0.002)S(0.002)S(0.004)S(0.116)S(0.116)T(0.322)T(0.322)PT(0.116)RK 70.358 0.0077216 0 954.53 777.91 1170.5 1090.8 806.01 635.46 567.49 803.48 881.81 1152.1 TRUE FALSE 967.896365 862.8448445 874.9927984 1020.84097 915.8022079 748.1499087 675.168265 735.2193588 966.5117905 917.3013876 1.055156329 0.940633968 0.953877112 1.112874115 0.998365663 0.815598798 0.736037549 0.801502504 1.05364693 1 9.841252012 -7.217061007 8.179455595 0.859929083 1.010889834 0.291218005 0.099279461 0.390365311 66.94258581 0.033615444 0.033471201 6.07E-08 7.217061007 0.150960751 SNVSSPATPTASSSSSTT(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 3 SNVSSPATPTASSSSSTTPTR 21 0 A6NNK5;Q12888;Q12888-3;Q12888-2;H7BZY0 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 SNVSSPATPT(0.007)AS(0.021)S(0.021)S(0.033)S(0.033)S(0.104)T(0.104)T(0.675)PT(0.001)R;SNVSSPATPTAS(0.009)S(0.109)S(0.109)S(0.009)S(0.009)T(0.009)T(0.739)PT(0.005)R;SNVSSPATPTASSSSST(0.001)T(0.999)PTR 330.83 1.25E-304 44679000 9911.3 8668.3 11418.6 10997.6 8698 9163.6 8285.1 9936.7 9032.6 11600.4 TRUE FALSE 10050.08878 9614.734308 8535.833207 10292.26316 9882.814858 10788.6358 9857.154474 9092.515312 9900.221589 9236.232112 1.088115658 1.040980152 0.92416833 1.114335698 1.070005034 1.168077595 1.067226804 0.984439889 1.071889648 1 13.17308871 -5.249505662 21.8111999 1.051613215 1.088115784 0.030348682 0.064824903 1524.732774 2786425.409 0.016847116 0.228997137 5.63E-06 5.249505662 0.036502569 SNVSSPATPTASSSSSTT(ph)PTRK ddPTM_K562_Paclitaxel_30min_R1 1 SNVSSPATPTASSSSSTTPTRK 22 1 A6NNK5;Q12888;Q12888-3;Q12888-2;H7BZY0 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 SNVSSPATPTAS(0.008)S(0.008)S(0.008)S(0.087)S(0.063)T(0.063)T(0.731)PT(0.031)RK 77.169 0.0052112 0 897.38 712.55 1185.2 864.84 659.18 719.36 601.55 891.51 752.73 1120.8 TRUE FALSE 909.9460887 790.3486187 885.9816016 809.3730333 748.971476 846.9283957 715.6909722 815.7706609 825.0330798 892.3803448 1.019684145 0.885663409 0.992829579 0.906982138 0.839296249 0.949066618 0.802002169 0.91415131 0.924530762 1 9.801514927 -2.000000053 0.831577793 0.901244851 34.04432975 0.194499757 0.059674229 941.6764661 2.82729866 0.019985108 58961.55182 0.009999999 2.000000053 33.1430849 SNVVSPT(ph)KNEDNGAPENSVEKPHEKPEAR ddPTM_K562_Paclitaxel_30min_R1 1 SNVVSPTKNEDNGAPENSVEKPHEKPEAR 29 3 X6RLN4;Q71RC2-2;Q71RC2-5;Q71RC2-3;Q71RC2;Q71RC2-4;Q71RC2-6 X6RLN4 LARP4 La-related protein 4 1 SNVVS(0.011)PT(0.987)KNEDNGAPENS(0.002)VEKPHEKPEAR 54.56 0.004392 16487000 2035.2 1210.9 7219 2715.3 1682 1164.5 990.82 2092.3 1883 3705.9 TRUE FALSE 2063.699079 1343.110157 5396.474167 2541.152811 1911.116876 1371.007725 1178.822923 1914.546055 2063.870563 2950.635546 0.69940833 0.455193512 1.828919256 0.861222192 0.64769669 0.464648278 0.39951492 0.648858873 0.699466448 1 11.52681002 -6.694426404 4.459620631 0.603401598 0.998018843 0.155013088 0.362102912 0.361542443 13.98589503 0.112962057 0.144967239 2.02E-07 6.694426404 0.394617245 SPAAPGQS(ph)PTGSVCYER ddPTM_K562_Paclitaxel_30min_R1 2 SPAAPGQSPTGSVCYER 17 0 O75534;O75534-4 O75534 CSDE1 Cold shock domain-containing protein E1 1 SPAAPGQS(0.483)PT(0.483)GS(0.034)VCYER;SPAAPGQS(0.684)PT(0.289)GS(0.027)VCYER 194.1 1.59E-11 27580000 2774.6 2544 3420.6 2754.6 2635 2362.4 2631 2999 2423.99 3251.6 TRUE FALSE 2813.45296 2821.762523 2557.027225 2577.932285 2993.931611 2781.33847 3130.218515 2744.216231 2656.82507 2588.922135 1.086727531 1.089937192 0.987680236 0.995755048 1.156439419 1.074322952 1.209081754 1.059984074 1.026228265 1 11.33813586 SPAAPGQSPT(ph)GSVCYER ddPTM_K562_Paclitaxel_30min_R1 1 SPAAPGQSPTGSVCYER 17 0 O75534;O75534-4 O75534 CSDE1 Cold shock domain-containing protein E1 1 S(0.002)PAAPGQS(0.045)PT(0.594)GS(0.351)VCY(0.008)ER 83.891 0.028735 39745000 1630.1 1983.6 2141.8 2342.4 1591.7 1426.5 1575.1 1800.4 1790.6 2071.1 TRUE FALSE 1652.926429 2200.176156 1601.076101 2192.168948 1808.516488 1679.469746 1873.967002 1647.444782 1962.595131 1649.008683 1.002375819 1.334241704 0.970932486 1.329385934 1.096729512 1.018472348 1.136420336 0.999051611 1.190166644 1 10.68738328 -6.982823129 24.99499425 1.071278103 1.165131083 0.107048846 0.122981343 511.1423711 743787.1144 0.035045019 0.039728941 1.04E-07 6.982823129 0.093852981 SPAAPYFLGSSFS(ph)PVR ddPTM_K562_Paclitaxel_30min_R1 2 SPAAPYFLGSSFSPVR 16 0 P30291 P30291 WEE1 Wee1-like protein kinase 1 SPAAPYFLGSS(0.016)FS(0.984)PVR;SPAAPYFLGS(0.006)S(0.027)FS(0.966)PVR 132.4 4.78E-07 76708000 2349.9 1813.82 2403.18 2024.59 1697.58 1790.47 2058.97 2420.64 1460.05 2863.75 TRUE FALSE 2382.80585 2011.859002 1796.467487 1894.741859 1928.819136 2107.984715 2449.648809 2214.991523 1600.294326 2280.116178 1.045037035 0.882349339 0.787884189 0.830984788 0.845930201 0.924507591 1.074352628 0.97143801 0.701847714 1 11.15489162 -7.410289213 6.146986136 0.943120754 0.871487335 0.059317567 0.109110102 0.665064257 31.74458849 0.040229881 0.035271868 3.89E-08 7.410289213 -0.071633419 SPAFTSRLS(ph)GNR ddPTM_K562_Paclitaxel_30min_R1 1 SPAFTSRLSGNR 12 1 Q7Z6Z7-2;Q7Z6Z7-3;Q7Z6Z7 Q7Z6Z7-2 HUWE1 E3 ubiquitin-protein ligase HUWE1 1 SPAFT(0.036)S(0.186)RLS(0.779)GNR 79.614 0.02375 26594000 988.5 806.28 1222 1024.1 791.07 829.47 866.96 975.37 1087.4 895.66 TRUE FALSE 1002.34205 894.3123771 913.4909865 958.4188097 898.8271269 976.5648582 1031.461134 892.5062304 1191.849629 713.1240004 1.40556488 1.254076958 1.280970751 1.343972169 1.260407904 1.369418022 1.446398009 1.251544234 1.671307694 1 9.478009149 -7.301141216 20.26096391 1.369621884 1.306333257 0.004971045 0.162547942 240.2625069 122609.1497 0.053129657 0.046859553 5.00E-08 7.301141216 -0.063288627 SPAGGGGSGASSTNGGLHYSEPES(ph)GCSSDDEHDVGMR ddPTM_K562_Paclitaxel_30min_R1 1 SPAGGGGSGASSTNGGLHYSEPESGCSSDDEHDVGMR 37 0 Q9P2K3-3;B4DV59;Q9P2K3-2;Q9P2K3-4 Q9P2K3-3 RCOR3 REST corepressor 3 1 SPAGGGGSGASSTNGGLHY(0.009)S(0.034)EPES(0.4)GCS(0.279)S(0.279)DDEHDVGMR 86.81 5.44E-10 21137000 527.08 406.69 680.09 526.62 397.49 345 406.5 434.26 532.75 533.5 TRUE FALSE 534.4607462 451.0937895 508.3928683 492.8449503 451.6348676 406.180906 483.6312529 397.3669024 583.9230179 424.7724072 1.258228494 1.061965848 1.196859447 1.160256509 1.063239655 0.956231853 1.138565605 0.935481909 1.374672667 1 8.730546243 -2 0.618386374 1.082995092 11.64021369 0.115248599 0.123860296 428.0318346 3.108355083 0.05197367 6137.059572 0.01 2 10.5572186 SPAGPAATPAQAQAAST(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 SPAGPAATPAQAQAASTPR 19 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 SPAGPAATPAQAQAAS(0.251)T(0.749)PR;SPAGPAATPAQAQAAS(0.028)T(0.972)PR;SPAGPAATPAQAQAAS(0.005)T(0.995)PR;SPAGPAATPAQAQAAS(0.084)T(0.916)PR 242.9 1.77E-57 156413000 6227 5823.2 7603.3 6833.9 6255.1 7216.9 6780.5 8870.6 3414.34 9572 TRUE FALSE 6314.197212 6458.996669 5683.752879 6395.604241 7107.15052 8496.715885 8067.064478 8116.987161 3742.302613 7621.221146 0.828502033 0.847501541 0.745779813 0.839183658 0.932547473 1.114875913 1.058500249 1.065050732 0.491037137 1 12.89580646 -6.757572274 3.904057155 0.963054566 0.80955327 0.123705033 0.165244105 0.431497407 14.5158865 0.052241294 0.06447559 1.75E-07 6.757572274 -0.153501296 SPAGSQQQFGY(ph)SPGQQQTHPQGSPR ddPTM_K562_Paclitaxel_30min_R1 1 SPAGSQQQFGYSPGQQQTHPQGSPR 25 0 Q8TAP9 Q8TAP9 MPLKIP M-phase-specific PLK1-interacting protein 1 S(0.08)PAGS(0.08)QQQFGY(0.695)S(0.141)PGQQQT(0.004)HPQGSPR 68.959 0.00454 7134200 289.03 223.03 307.19 348.07 251.3 153.4 313.7 450.9 187.24 290.7 TRUE FALSE 293.0773117 247.3811696 229.6360852 325.7463481 285.5313145 180.6033362 373.2229374 412.5932306 205.2252386 231.4551804 1.266237857 1.068808091 0.992140616 1.407384132 1.233635445 0.78029507 1.612506303 1.782605297 0.886673775 1 7.854589043 -7.780706801 24.99950437 1.385663304 1.133975838 0.079750408 0.292981124 498.0567748 646223.2815 0.12089955 0.081649496 1.66E-08 7.780706801 -0.251687466 SPAGSQQQFGYSPGQQQTHPQGS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 SPAGSQQQFGYSPGQQQTHPQGSPR 25 0 Q8TAP9 Q8TAP9 MPLKIP M-phase-specific PLK1-interacting protein 1 SPAGSQQQFGYSPGQQQT(0.028)HPQGS(0.972)PR;SPAGSQQQFGYSPGQQQT(0.019)HPQGS(0.981)PR 190.59 1.36E-32 213390000 3483.7 2978.3 4086.6 3287.8 3120.7 3398.6 2593.2 3798.4 2824.2 4006.3 TRUE FALSE 3532.482548 3303.480866 3054.887288 3076.935224 3545.792174 4001.293991 3085.246163 3475.702211 3095.477029 3189.813861 1.10742592 1.035634369 0.9577008 0.964612782 1.11159846 1.25439733 0.967218244 1.089625402 0.9704256 1 11.63925652 -3.9566028 2.723545339 1.044314755 46.2051346 0.047397692 0.088366079 5653.454218 66.60792298 0.023856139 1591721.187 0.000110509 3.9566028 45.16081985 SPAVATSTAAPPPPSS(ph)PLPSK ddPTM_K562_Paclitaxel_30min_R1 4 SPAVATSTAAPPPPSSPLPSK 21 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 SPAVATSTAAPPPPS(0.23)S(0.768)PLPS(0.001)K;SPAVATSTAAPPPPS(0.229)S(0.771)PLPSK;SPAVATSTAAPPPPS(0.213)S(0.779)PLPS(0.007)K;SPAVATSTAAPPPPS(0.235)S(0.758)PLPS(0.008)K 222.13 2.77E-44 664355000 16360.3 15152.1 26826.8 18731 14560.3 13078.1 13713.9 18329.6 15902.3 20890.3 TRUE FALSE 16589.39468 16806.45752 20054.04255 17529.6775 16543.65937 15397.31741 16316.04093 16772.38607 17429.78697 16632.84539 0.997387656 1.010437909 1.20568923 1.053919343 0.994637957 0.925717581 0.980953081 1.008389465 1.047913725 1 14.02174737 -6.716475815 4.744378609 0.989098751 1.074408175 0.270024785 0.0595269 0.268431992 13.20261765 0.019196035 0.024380864 1.92E-07 6.716475815 0.085309424 SPDEALPGGLSGCSSGS(ph)GHSPYALER ddPTM_K562_Paclitaxel_30min_R1 1 SPDEALPGGLSGCSSGSGHSPYALER 26 0 Q5JSZ5-5;Q5JSZ5;H0Y412;A0A494C065;A0A494C0D3 Q5JSZ5-5 PRRC2B Protein PRRC2B 1 SPDEALPGGLS(0.001)GCS(0.014)S(0.095)GS(0.85)GHS(0.04)PYALER 103.92 2.65E-06 32481000 2297.9 1867.8 2709.8 2386 2405.9 2024.8 1910.2 2512.3 2681.2 2387.9 TRUE FALSE 2330.07769 2071.73272 2025.677476 2232.972639 2733.624312 2383.86985 2272.650478 2298.864434 2938.74124 1901.244669 1.225553832 1.08967181 1.065448076 1.174479369 1.437807746 1.253846961 1.195348771 1.209136557 1.545693349 1 10.89272849 -6.535563116 24.85996218 1.281641819 1.122635009 0.181969663 0.142076874 322.622429 632300.655 0.040397825 0.052187621 2.91E-07 6.535563116 -0.15900681 SPDEALPGGLSGCSSGSGHS(ph)PYALER ddPTM_K562_Paclitaxel_30min_R1 1 SPDEALPGGLSGCSSGSGHSPYALER 26 0 Q5JSZ5-5;Q5JSZ5;H0Y412;A0A494C065;A0A494C0D3 Q5JSZ5-5 PRRC2B Protein PRRC2B 1 SPDEALPGGLSGCSS(0.001)GS(0.071)GHS(0.927)PY(0.001)ALER 132.42 2.17E-14 29523000 1620.9 1575.3 1764 1743.4 1433.1 1735.8 1505.8 1933.4 1666 2043.6 TRUE FALSE 1643.597601 1747.296581 1318.656383 1631.586127 1628.312483 2043.619758 1791.517689 1769.145602 1826.026744 1627.113198 1.010131073 1.073862951 0.810426948 1.002748997 1.000737063 1.255978847 1.101040598 1.08729104 1.122249359 1 10.66809891 -7.027015706 23.74633139 1.119151542 0.973705332 0.3814349 0.085517977 399.0204307 350730.962 0.02807237 0.028166984 9.40E-08 7.027015706 -0.145446209 SPDKPGGS(ph)PSASR ddPTM_K562_Paclitaxel_30min_R1 4 SPDKPGGSPSASR 13 1 Q9Y3T9 Q9Y3T9 NOC2L Nucleolar complex protein 2 homolog 1 SPDKPGGS(0.876)PS(0.12)AS(0.004)R;S(0.001)PDKPGGS(0.619)PS(0.337)AS(0.043)R;SPDKPGGS(0.761)PS(0.225)AS(0.014)R;SPDKPGGS(0.499)PS(0.499)AS(0.003)R 185.86 0.00012028 33674400 5882.8 5189.2 10093.3 6654 5274.9 4333.14 4413.48 6893.5 4952.5 6972.9 TRUE FALSE 5965.17735 5755.774405 7545.121583 6227.242222 5993.430685 5101.561539 5250.91479 6307.854147 5428.209753 5551.819152 1.07445455 1.036736653 1.359035908 1.121657974 1.079543573 0.918899085 0.945800763 1.136177886 0.977735334 1 12.43874486 -6.919508089 3.296866123 1.000922183 1.155257517 0.355512049 0.096077196 0.292623489 6.386307576 0.032988268 0.037576995 1.20E-07 6.919508089 0.154335334 SPFEHSVEHKS(ph)TPEHTWSSR ddPTM_K562_Paclitaxel_30min_R1 1 SPFEHSVEHKSTPEHTWSSR 20 1 O14646;O14646-2 O14646;O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 S(0.002)PFEHS(0.025)VEHKS(0.486)T(0.486)PEHTWSSR 66.893 0.0084317 15834000 1469.7 1321.6 2386 1789.9 1265.4 1405.7 1213.7 1743.7 1692.8 2105 TRUE FALSE 1490.280334 1465.896757 1783.62479 1675.103825 1437.768903 1654.981158 1443.993239 1595.561801 1855.401004 1675.999845 0.889188826 0.874640151 1.064215367 0.999465382 0.857857421 0.987459016 0.861571225 0.952005936 1.107041274 1 10.7108063 -8.657191532 6.901431909 1.052143094 0.93592989 0.324611889 0.068203612 0.250711891 14.27345309 0.047988971 0.017687442 2.20E-09 8.657191532 -0.116213204 SPFEHSVEHKST(ph)PEHTWSSR ddPTM_K562_Paclitaxel_30min_R1 1 SPFEHSVEHKSTPEHTWSSR 20 1 O14646;O14646-2 O14646;O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 SPFEHS(0.003)VEHKS(0.23)T(0.767)PEHTWSSR 95.624 0.00031329 16586000 1243.3 1051.6 2125.6 1391.4 1226.7 1173.6 1161.7 1561.1 1424.2 1860.8 TRUE FALSE 1260.710036 1166.417244 1588.965991 1302.161832 1393.797308 1381.721482 1382.126511 1428.474811 1561.000773 1481.567939 0.850929615 0.787285695 1.072489455 0.878907945 0.940758282 0.932607575 0.932880953 0.96416423 1.053614035 1 10.53290907 -2.376738811 0.276901362 0.996863524 4.83E-20 0.339172665 0.06787713 50.7527037 0.862460689 0.076857615 23.43878386 0.004200115 2.376738811 -0.996863524 SPFEIIS(ph)PPAS(ph)PPEMVGQR ddPTM_K562_Paclitaxel_30min_R1 2 SPFEIISPPASPPEMVGQR 19 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 2 S(0.008)PFEIIS(0.992)PPAS(1)PPEMVGQR;S(0.077)PFEIIS(0.924)PPAS(0.999)PPEMVGQR 123.42 2.25E-05 60743000 4000.7 3748.8 4425.1 3573.9 3432.8 3511 3456.2 3702.5 3228.7 4122.7 TRUE FALSE 4056.722143 4158.106662 3307.928776 3344.68605 3900.405478 4133.626553 4111.995907 3387.949515 3538.831061 3282.491477 1.235866771 1.266753224 1.007749388 1.018947368 1.188245424 1.259295441 1.252705738 1.032127437 1.078092993 1 11.68057555 -8.284571298 24.13001938 1.041332614 1.170372344 0.331751016 0.090058064 763.7975741 796747.4645 0.055205725 0.026552987 5.19E-09 8.284571298 0.12903973 SPFEIISPPAS(ph)PPEMVGQR ddPTM_K562_Paclitaxel_30min_R1 1 SPFEIISPPASPPEMVGQR 19 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 S(0.012)PFEIIS(0.318)PPAS(0.67)PPEMVGQR 63.76 0.030865 9462700 422.5 513.74 485.48 691.64 595.38 326.02 377.43 543.89 361.8 600.8 TRUE FALSE 428.4163035 569.8318706 362.9145697 647.2813061 676.4808359 383.8350695 449.0453722 497.6831496 396.5525066 478.3566302 0.895600221 1.191228123 0.758669467 1.353135433 1.414176773 0.802403573 0.938725093 1.040401906 0.828989255 1 8.901942785 SPGCRPLPSAGSPT(ph)PTTHEIVTVGDPLLSSGLR ddPTM_K562_Paclitaxel_30min_R1 1 SPGCRPLPSAGSPTPTTHEIVTVGDPLLSSGLR 33 1 Q03164-2;Q03164;Q03164-3 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 S(0.008)PGCRPLPS(0.008)AGS(0.1)PT(0.378)PT(0.378)T(0.128)HEIVTVGDPLLSSGLR 65.33 0.00022016 90654000 1378.7 1263.6 1233.6 1468.8 1561.3 1236 1233.2 1462.2 1230.8 1505.9 TRUE FALSE 1398.006054 1401.564121 922.162423 1374.597742 1773.975493 1455.187246 1467.193262 1337.976983 1349.023839 1198.996753 1.165979849 1.168947386 0.769111693 1.146456601 1.479549872 1.213670714 1.223684099 1.115913767 1.125127183 1 10.22761204 SPGS(ph)NSKVPEIEVTVEGPNNNNPQTSAVR ddPTM_K562_Paclitaxel_30min_R1 1 SPGSNSKVPEIEVTVEGPNNNNPQTSAVR 29 1 A0A494C1K3;P78347-2;P78347-4;P78347-3;P78347 A0A494C1K3 GTF2I General transcription factor II-I 1 S(0.114)PGS(0.442)NS(0.442)KVPEIEVT(0.001)VEGPNNNNPQTSAVR 88.433 1.48E-06 86965000 508.12 244.56 833.93 448.53 335.24 241.63 376.59 515.05 459.15 497.91 TRUE FALSE 515.2352477 271.2618878 623.3940576 419.7632933 380.9053637 284.4796878 448.0459866 471.2932877 503.253409 396.4356687 1.299669249 0.684251971 1.572497398 1.058843405 0.960825157 0.717593573 1.130185859 1.188826649 1.269445332 1 8.630942962 -10.74634338 14.6341665 1.000000002 1.087042345 0.011645766 0.253343148 0 0 0.242647579 0.058850682 1.79E-11 10.74634338 0.087042344 SPGS(ph)PVGEGTGSPPK ddPTM_K562_Paclitaxel_30min_R1 2 SPGSPVGEGTGSPPK 15 0 E7EV99;E7ENY0;P35611-5;P35611-2;P35611-6;P35611-4;P35611;P35611-3;H0Y9H2;A0A0A0MSR2 E7EV99 ADD1 Alpha-adducin 1 SPGS(1)PVGEGTGSPPK;SPGS(1)PVGEGTGSPPK 217.79 3.69E-19 141953000 7082 6146.5 12828.6 8506.5 6231.8 5667.4 5369.7 7651.7 4152 9392.5 TRUE FALSE 7181.16985 6817.595656 9589.861268 7960.931164 7080.676665 6672.433816 6388.572543 7001.640325 4550.818152 7478.303344 0.960267258 0.911650055 1.282357886 1.064537074 0.946829293 0.892238989 0.854281011 0.93626054 0.60853618 1 12.86849528 -7.068616918 2.207398669 0.85015486 1.059269356 0.33208568 0.130957179 0.373604024 3.611191452 0.048728623 0.05095468 8.54E-08 7.068616918 0.209114496 SPGS(ph)PVGEGTGSPPKWQIGEQEFEALMR ddPTM_K562_Paclitaxel_30min_R1 1 SPGSPVGEGTGSPPKWQIGEQEFEALMR 28 1 E7EV99;E7ENY0;P35611-5;P35611-2;P35611-6;P35611-4;P35611;P35611-3;H0Y9H2;A0A0A0MSR2 E7EV99 ADD1 Alpha-adducin 1 S(0.081)PGS(0.834)PVGEGT(0.065)GS(0.02)PPKWQIGEQEFEALMR 62.1 0.0014162 7896600 452.88 395.74 671.31 391.29 355.58 293.74 309.4 524.44 480.17 683.2 TRUE FALSE 459.2217173 438.9482315 501.8294878 366.1944107 404.016016 345.8306647 368.1070348 479.8855485 526.292474 543.963465 0.844214266 0.806944326 0.922542634 0.673196702 0.742726382 0.635760831 0.676712791 0.882201801 0.967514379 1 9.087365947 -8.529602232 3.554641459 0.978750626 0.75745713 0.555498433 0.081944771 0.196471651 5.257832322 0.066182628 0.024043716 2.95E-09 8.529602232 -0.221293496 SPGS(ph)TPT(ph)TPTSSQAPQK ddPTM_K562_Paclitaxel_30min_R1 1 SPGSTPTTPTSSQAPQK 17 0 A0A494C1F2;P35658-2;P35658-4;P35658;P35658-3;P35658-5 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 2 S(0.012)PGS(0.782)T(0.199)PT(0.427)T(0.27)PT(0.125)S(0.155)S(0.03)QAPQK 97.904 0.0055127 50169000 4678.8 3736.4 7336.4 4628.9 3631.2 3499.3 3797.1 5123.3 3009.5 6584.6 TRUE FALSE 4744.317635 4144.352788 5484.235085 4332.023072 4125.830917 4119.851722 4517.579903 4688.043686 3298.575922 5242.654906 0.904945628 0.790506501 1.046079741 0.826303304 0.786973583 0.785833093 0.861696981 0.894211763 0.62918044 1 12.35608187 -6.479881013 24.99528924 0.819486542 0.907290445 0.123522446 0.105481375 966.1448939 561635.2976 0.028354436 0.042052621 3.31E-07 6.479881013 0.087803904 SPGS(ph)TPTT(ph)PTSSQAPQK ddPTM_K562_Paclitaxel_30min_R1 1 SPGSTPTTPTSSQAPQK 17 0 A0A494C1F2;P35658-2;P35658-4;P35658;P35658-3;P35658-5 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 2 S(0.071)PGS(0.542)T(0.387)PT(0.057)T(0.936)PT(0.005)S(0.001)SQAPQK 152.94 2.49E-07 58419000 4933.6 4114.1 8080.3 5323.7 4662.3 3321.4 3588.3 5436.7 2717.7 6548 TRUE FALSE 5002.685621 4563.291351 6040.328329 4982.26171 5297.384193 3910.403655 4269.161193 4974.8184 2978.747228 5213.514006 0.959561174 0.875281307 1.158590602 0.95564368 1.016087074 0.750051434 0.818864433 0.954215985 0.571351151 1 12.34804039 -7.2526828 24.80332977 0.816033089 0.993611513 0.319334978 0.127080865 693.6136442 1964687.063 0.040517717 0.039900394 5.59E-08 7.2526828 0.177578424 SPGS(ph)TPTTPT(ph)SSQAPQK ddPTM_K562_Paclitaxel_30min_R1 1 SPGSTPTTPTSSQAPQK 17 0 A0A494C1F2;P35658-2;P35658-4;P35658;P35658-3;P35658-5 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 2 S(0.005)PGS(0.751)T(0.245)PT(0.122)T(0.27)PT(0.431)S(0.102)S(0.075)QAPQK 109.67 0.0018516 20697000 4105.8 3784.7 8377.3 4548.5 3759.5 3167.9 3352.3 5062.1 3305.7 6735.5 TRUE FALSE 4163.293867 4197.926345 6262.347006 4256.779568 4271.607549 3729.682585 3988.381425 4632.043008 3623.227255 5362.801403 0.776328183 0.782786091 1.167738004 0.793760434 0.796525403 0.695472815 0.743712311 0.863735697 0.67562212 1 12.38877111 -6.482026452 24.99725667 0.782654864 0.910403435 0.129141946 0.132311028 925.6349533 566389.6581 0.036702493 0.054430759 3.30E-07 6.482026452 0.127748571 SPGS(ph)TPTTPTSSQAPQK ddPTM_K562_Paclitaxel_30min_R1 1 SPGSTPTTPTSSQAPQK 17 0 A0A494C1F2;P35658-2;P35658-4;P35658;P35658-3;P35658-5 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 S(0.005)PGS(0.954)T(0.033)PT(0.006)T(0.002)PTSSQAPQK 96.208 0.0034648 7417500 1465.6 1450.2 2382.6 1479.4 1299 1154.7 1318.6 1618.8 1036.7 2347.1 TRUE FALSE 1486.122922 1608.53774 1781.083162 1384.517906 1475.945792 1359.469832 1568.797466 1481.272836 1136.279667 1868.759732 0.795245583 0.860751499 0.953083017 0.740875289 0.789799655 0.727471707 0.839485911 0.792650232 0.608039465 1 10.86786538 -6.281726079 24.99399657 0.776848928 0.868799195 0.126827709 0.099470957 1446.598705 1782261.76 0.026712539 0.039674 5.23E-07 6.281726079 0.091950267 SPGSTPTT(ph)PTSSQAPQK ddPTM_K562_Paclitaxel_30min_R1 1 SPGSTPTTPTSSQAPQK 17 0 A0A494C1F2;P35658-2;P35658-4;P35658;P35658-3;P35658-5 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 SPGS(0.001)T(0.046)PT(0.283)T(0.664)PT(0.005)S(0.001)SQAPQK 201.4 2.76E-13 19170000 2416 2036.9 4121.6 2770 1880.9 2182.6 1987.3 2815.6 1249.9 3030.2 TRUE FALSE 2449.831454 2259.29563 3081.051105 2592.344598 2137.110424 2569.653465 2364.379801 2576.397206 1369.95848 2412.643577 1.015413747 0.936439867 1.277043627 1.074483037 0.885796163 1.065077946 0.97999548 1.067873112 0.567824644 1 11.23639908 -8.728997273 24.99990983 0.783911763 1.037506924 0.350762157 0.138145433 174.2285845 134261.143 0.089873589 0.033963473 1.87E-09 8.728997273 0.253595161 SPHQLLSPSSFS(ph)PSATPSQK ddPTM_K562_Paclitaxel_30min_R1 1 SPHQLLSPSSFSPSATPSQK 20 0 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 1 SPHQLLSPS(0.012)S(0.099)FS(0.868)PS(0.015)AT(0.006)PS(0.001)QK 106.5 0.00025553 16004000 3038.9 2531.6 5116.1 3538.6 2863.3 2829.4 2546.6 3578.5 2966.8 4316.2 TRUE FALSE 3081.453976 2808.008649 3824.47728 3311.650034 3253.329936 3331.154363 3029.804056 3274.484089 3251.774396 3436.556071 0.896669198 0.817099617 1.112880803 0.963653718 0.946683211 0.969329263 0.88163964 0.952838837 0.946230566 1 11.74674778 -5.680630415 24.98587276 0.965531154 0.856883328 0.379203204 0.058319172 32.41278873 10019.32321 0.014924606 0.039486789 2.09E-06 5.680630415 -0.108647826 SPLELGEKLS(ph)PLPGGPGAGDPR ddPTM_K562_Paclitaxel_30min_R1 1 SPLELGEKLSPLPGGPGAGDPR 22 1 Q15742-2;Q15742-3;Q15742 Q15742-2 NAB2 NGFI-A-binding protein 2 1 S(0.013)PLELGEKLS(0.987)PLPGGPGAGDPR 63.823 0.0091116 31383000 1912.1 1685.7 3081.8 1696.7 1647.3 1189.1 1398.2 2209.3 1636.6 2663 TRUE FALSE 1938.875299 1869.750427 2303.761475 1587.881256 1871.690149 1399.970189 1663.501151 2021.606175 1793.802743 2120.279138 0.914443417 0.881841637 1.086536878 0.748901985 0.88275648 0.660276359 0.784567051 0.953462277 0.846021974 1 11.0500385 -6.277416869 24.87477042 0.829542527 0.953030763 0.216482572 0.104437855 1120.093801 1743830.299 0.029533828 0.043966025 5.28E-07 6.277416869 0.123488236 SPLGEAPPGT(ph)PPCR ddPTM_K562_Paclitaxel_30min_R1 4 SPLGEAPPGTPPCR 14 0 M0QXZ5;Q96B54 M0QXZ5 ZNF428 Zinc finger protein 428 1 S(0.001)PLGEAPPGT(0.999)PPCR;S(0.223)PLGEAPPGT(0.777)PPCR;SPLGEAPPGT(1)PPCR;S(0.015)PLGEAPPGT(0.985)PPCR 134.02 0.00010749 131194000 7740.56 7952.2 8731.8 7753.6 7510.3 6669.21 6894.7 8099.5 7636.6 8200.3 TRUE FALSE 7848.951722 8820.448089 6527.349096 7256.3188 8533.33001 7851.900753 8202.933332 7411.39692 8370.129551 6529.074359 1.202153826 1.350949247 0.999735757 1.111385535 1.306973936 1.202605503 1.256370028 1.135137465 1.281977979 1 12.67266276 -11.15869849 4.596586134 0.999972421 1.203088979 0.282702753 0.098029413 2.79E-05 5.10E-06 0.095451621 0.023147277 6.94E-12 11.15869849 0.203116558 SPLLAGGS(ph)PPQPVVPAHK ddPTM_K562_Paclitaxel_30min_R1 2 SPLLAGGSPPQPVVPAHK 18 0 Q8NFH5-2;Q8NFH5;C9IYQ7;F8WCF5;F8WEL4;C9JIY9 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 SPLLAGGS(1)PPQPVVPAHK;S(0.012)PLLAGGS(0.988)PPQPVVPAHK 130.38 1.26E-08 54520600 7009.8 6970 11684 8732.7 6112.6 5580.8 5873.1 9144.4 5681.4 9927.3 TRUE FALSE 7107.958827 7731.008171 8734.229694 8172.623708 6945.239607 6570.476522 6987.490065 8367.526142 6227.123855 7904.110811 0.899273681 0.978099669 1.10502369 1.033971297 0.878687024 0.831273331 0.884032402 1.05862966 0.787833572 1 12.94838746 -6.760924309 24.9999968 0.904765163 1.009444893 0.22976068 0.087054582 20.45159853 992630.9929 0.026722988 0.032435352 1.73E-07 6.760924309 0.10467973 SPLLSASHS(ph)GNVTPTAPPYLQESSPR ddPTM_K562_Paclitaxel_30min_R1 1 SPLLSASHSGNVTPTAPPYLQESSPR 26 0 E5RJC2;E5RIP9;E5RIY0;E5RFT4;Q8N4L2 E5RJC2 TMEM55A "Type 2 phosphatidylinositol 4,5-bisphosphate 4-phosphatase" 1 SPLLS(0.003)AS(0.022)HS(0.79)GNVT(0.167)PT(0.018)APPYLQESSPR 79.025 0.000101 27570000 1413.7 1383.3 1769.6 1802.4 1350.4 1237.5 1495.1 1464.8 1071.9 1674.2 TRUE FALSE 1433.496162 1534.333372 1322.842594 1686.802131 1534.347342 1456.95325 1778.78742 1340.356097 1174.860784 1332.997121 1.075393292 1.151040274 0.992382184 1.265420686 1.151050755 1.092990545 1.334427053 1.005520624 0.881367833 1 10.38045795 -8.508503923 24.4966888 0.94160396 1.149319527 0.470306929 0.093838209 415.5842435 708221.0637 0.052761726 0.023769808 3.10E-09 8.508503923 0.207715567 SPLLSASHSGNVT(ph)PTAPPYLQESSPR ddPTM_K562_Paclitaxel_30min_R1 1 SPLLSASHSGNVTPTAPPYLQESSPR 26 0 E5RJC2;E5RIP9;E5RIY0;E5RFT4;Q8N4L2 E5RJC2 TMEM55A "Type 2 phosphatidylinositol 4,5-bisphosphate 4-phosphatase" 1 SPLLSASHS(0.006)GNVT(0.904)PT(0.031)APPYLQES(0.017)S(0.042)PR 75.874 0.00021282 21098000 841.65 690.29 844.31 855.23 696.02 666.92 726.23 780.86 621.52 941.07 TRUE FALSE 853.4356967 765.6581966 631.1534982 800.3793757 790.8297077 785.188898 864.0283513 714.521069 681.219773 749.2794174 1.139008595 1.021859374 0.842347305 1.068198801 1.055453666 1.047925353 1.153145717 0.953610966 0.909166537 1 9.549360011 -8.478487653 24.95121936 0.946851536 1.040227075 0.207037447 0.082049151 695.2329634 390775.7945 0.046931331 0.022543016 3.32E-09 8.478487653 0.093375539 SPPLS(ph)PVGTTPVK ddPTM_K562_Paclitaxel_30min_R1 1 SPPLSPVGTTPVK 13 0 C9J4K0;Q9BVC5-2;Q9BVC5 C9J4K0 C2orf49 Ashwin 1 S(0.001)PPLS(0.961)PVGT(0.019)T(0.019)PVK 105.19 0.0061262 15184000 2183.8 2101.9 3350.3 2317.5 1370.7 1473 1394.9 1676.3 1333.2 2579.9 TRUE FALSE 2214.379938 2331.39255 2504.475329 2168.865923 1557.412546 1734.215868 1659.574993 1533.887852 1461.259817 2054.114964 1.078021424 1.134986401 1.219247887 1.055863942 0.75819152 0.844264269 0.807927026 0.746739048 0.711381711 1 11.00430121 -6.653639208 4.275843554 0.800344543 1.142370958 0.781526338 0.081115026 0.091620559 2.977795928 0.023814775 0.030989082 2.22E-07 6.653639208 0.342026415 SPPPRS(ph)PPPSPPTHR ddPTM_K562_Paclitaxel_30min_R1 1 SPPPRSPPPSPPTHR 15 1 Q96HA1 Q96HA1 POM121 Nuclear envelope pore membrane protein POM 121 1 S(0.015)PPPRS(0.985)PPPSPPTHR 70.272 0.026942 2958000 868.41 739.25 671.89 828.16 844.82 503.08 597.71 847.37 549.14 958.55 TRUE FALSE 880.5704193 819.963815 502.2630597 775.0455243 959.8987869 592.2941744 711.1223522 775.3806294 601.8873506 763.1969838 1.153791797 1.074380314 0.658104094 1.015524879 1.257733989 0.776069857 0.931767771 1.015963959 0.788639582 1 9.57591166 SPPPS(ph)PPTHR ddPTM_K562_Paclitaxel_30min_R1 1 SPPPSPPTHR 10 0 Q96HA1 Q96HA1 POM121 Nuclear envelope pore membrane protein POM 121 1 SPPPS(0.993)PPT(0.007)HR 82.515 0.02357 2964300 151.66 187.88 256.17 114.46 183.77 171.98 159.59 198.46 133.93 271.07 TRUE FALSE 153.7837079 208.3933738 191.4967152 107.1190479 208.8025853 202.4782383 189.8713694 181.5995843 146.7945749 215.8257852 0.712536307 0.965562913 0.887274498 0.496321826 0.967458939 0.938155921 0.879743675 0.841417461 0.680153091 1 7.753723427 SPPREGS(ph)QGELTPANSQSR ddPTM_K562_Paclitaxel_30min_R1 2 SPPREGSQGELTPANSQSR 19 1 J3QQX0;C9JFE4;A0A096LP07;A0A096LPJ3;A8K070;Q13098-5;Q13098;Q13098-7 J3QQX0 GPS1 COP9 signalosome complex subunit 1 1 S(0.184)PPREGS(0.816)QGELTPANSQSR;S(0.001)PPREGS(0.999)QGELTPANSQSR 163.11 1.61E-11 34991000 3307 2820.2 3953.8 3889.9 3426.5 2896.6 3244 3857.2 3059.9 3880.3 TRUE FALSE 3353.308203 3128.118973 2955.61429 3640.419225 3893.247311 3410.27134 3859.532065 3529.506784 3353.817067 3089.49273 1.085391194 1.012502455 0.95666653 1.178322638 1.26015746 1.103828893 1.249244586 1.142422751 1.085555902 1 11.59315426 -6.272021033 24.87261175 1.158927104 1.017618299 0.350004247 0.078143998 619.1214447 1455268.714 0.021409687 0.032121711 5.35E-07 6.272021033 -0.141308805 SPQPPVEEEDEHFDDT(ph)VVCLDTYNCDLHFK ddPTM_K562_Paclitaxel_30min_R1 1 SPQPPVEEEDEHFDDTVVCLDTYNCDLHFK 30 0 A0A1W2PPS1;Q00839-2;Q00839;A0A1W2PP35;Q5RI18;A0A1W2PRI6 A0A1W2PPS1 HNRNPU Heterogeneous nuclear ribonucleoprotein U 1 S(0.185)PQPPVEEEDEHFDDT(0.801)VVCLDT(0.01)Y(0.004)NCDLHFK 44.164 0.015146 45208000 393.17 413.07 364.32 515.94 277.18 399.8 278.63 491.91 584.12 531.51 TRUE FALSE 398.675593 458.1703795 272.3429101 482.8499177 314.9366087 470.6989165 331.498588 450.1191751 640.2273359 423.1879702 0.942076857 1.082663997 0.64355069 1.140982144 0.744200286 1.112269132 0.783336511 1.063638871 1.512867522 1 8.725154807 -8.529743032 24.54320311 1.267040433 0.925638578 0.325071793 0.192513863 145.0032283 518437.5209 0.116659325 0.044330207 2.95E-09 8.529743032 -0.341401855 SPQPVCSPAGS(ph)EGTPK ddPTM_K562_Paclitaxel_30min_R1 1 SPQPVCSPAGSEGTPK 16 0 A0A590UJS4;Q6KC79-2;Q6KC79-3;Q6KC79 A0A590UJS4;Q6KC79 NIPBL Nipped-B-like protein 1 SPQPVCS(0.321)PAGS(0.672)EGT(0.007)PK 97.823 0.0044617 12881000 3341 3015.5 6011.8 4283.1 3225.2 2709.9 2667.3 4210.9 2751.1 4900.2 TRUE FALSE 3387.784308 3344.742488 4494.046737 4008.401136 3664.526843 3190.462716 3173.406251 3853.157761 3015.355447 3901.53655 0.868320536 0.857288518 1.151865856 1.027390384 0.939252214 0.817745182 0.813373452 0.987600068 0.772863565 1 11.9298267 -7.024776355 8.154915815 0.87388902 0.980725762 0.168981864 0.102564472 0.427746508 123.7876837 0.034435481 0.03553663 9.45E-08 7.024776355 0.106836742 SPQPVPSPRPQSQPPHS(ph)SPSPR ddPTM_K562_Paclitaxel_30min_R1 1 SPQPVPSPRPQSQPPHSSPSPR 22 1 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 1 S(0.001)PQPVPS(0.28)PRPQS(0.198)QPPHS(0.4)S(0.114)PS(0.007)PR 68.952 0.0040401 39849000 1628.8 1856.5 1921.1 1750.8 1896.3 2285.4 1821.8 1893.8 1586.7 2319.4 TRUE FALSE 1651.608225 2059.198948 1436.094545 1638.511524 2154.608165 2690.683601 2167.47704 1732.909869 1739.109625 1846.705007 0.894354117 1.115066532 0.777652381 0.887262188 1.1667311 1.457018631 1.17369966 0.938379364 0.941736562 1 10.85073771 -6.761213056 24.99999972 1.130089695 0.922551733 0.255077128 0.161052257 9.13448049 1008910.344 0.053786257 0.065144051 1.73E-07 6.761213056 -0.207537962 SPQPVPSPRPQSQPPHSSPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 SPQPVPSPRPQSQPPHSSPSPR 22 1 A0A669KB12;Q09472 A0A669KB12 EP300 Histone acetyltransferase p300 1 SPQPVPS(0.006)PRPQSQPPHS(0.056)S(0.323)PS(0.614)PR 83.465 0.00077527 21390000 620.17 663.93 917.18 875.15 747.31 953.41 893.72 844.79 664.54 859.57 TRUE FALSE 628.8542934 736.4201227 685.6265655 819.021796 849.1062741 1122.483877 1063.298704 773.0198165 728.3720362 684.3891622 0.918854839 1.076025401 1.00180804 1.196719412 1.240677557 1.64012515 1.553646322 1.129503299 1.064265883 1 9.418673104 -6.447349342 2.231094042 1.310272607 1.000311101 0.272916822 0.193383538 0.408332576 4.01001397 0.065122483 0.105332803 3.57E-07 6.447349342 -0.309961506 SPQQTVPYVVPLS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 SPQQTVPYVVPLSPK 15 0 Q9UQR0;H0Y6S1;B4DRC2 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 1 SPQQTVPYVVPLS(0.999)PK;SPQQT(0.001)VPY(0.001)VVPLS(0.998)PK 106.28 0.0026202 28112000 3511.9 2840 5517.4 4210.6 2962.9 3289.2 2963.4 4068.6 2423.1 3962.6 TRUE FALSE 3561.077435 3150.080804 4124.464132 3940.550962 3366.497142 3872.493437 3525.68968 3722.947035 2655.849582 3155.019945 1.128702036 0.998434514 1.307270383 1.248978146 1.067028799 1.227406959 1.117485703 1.180007448 0.841785354 1 11.62343341 -8.752699204 24.9999633 0.920892663 1.159751573 0.518303816 0.091977114 130.4819927 373231.8237 0.064241557 0.023459799 1.77E-09 8.752699204 0.23885891 SPRPQQDPARPQEPTMPPPET(ph)PSEGRQPSPSPSPTER ddPTM_K562_Paclitaxel_30min_R1 1 SPRPQQDPARPQEPTMPPPETPSEGRQPSPSPSPTER 37 3 P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;P29590-12;P29590-13;P29590-11;P29590-14;P29590-10;P29590-4;H3BT57 P29590-2;P29590-4 PML Protein PML 1 SPRPQQDPARPQEPT(0.114)MPPPET(0.414)PS(0.131)EGRQPS(0.214)PS(0.054)PS(0.064)PT(0.009)ER 47.044 0.0091015 15969000 1408 1302.8 1823.2 1525 1331.7 1143.6 1281 1464.3 850.92 1613.1 TRUE FALSE 1427.716344 1445.04411 1362.910611 1427.193326 1513.100086 1346.401403 1524.063063 1339.898575 932.654668 1284.349335 1.11162618 1.125117654 1.061168153 1.111218955 1.178106334 1.048314011 1.186642155 1.043250881 0.726168997 1 10.32682194 -8.579071221 7.10734538 0.866077313 1.11508151 0.650455033 0.073599785 0.120585466 12.27674328 0.045706836 0.017031478 2.64E-09 8.579071221 0.249004196 SPRPQQDPARPQEPTMPPPETPSEGRQPSPS(ph)PSPTER ddPTM_K562_Paclitaxel_30min_R1 1 SPRPQQDPARPQEPTMPPPETPSEGRQPSPSPSPTER 37 3 P29590-2;P29590-5;P29590-9;P29590-3;P29590-8;P29590;P29590-12;P29590-13;P29590-11;P29590-14;P29590-10;P29590-4;H3BT57 P29590-2;P29590-4 PML Protein PML 1 SPRPQQDPARPQEPTMPPPETPSEGRQPS(0.017)PS(0.327)PS(0.327)PT(0.327)ER 46.061 0.0032441 19309000 698.99 656.71 746.44 595.89 588.24 513.17 490.6 689.12 525.54 645.8 TRUE FALSE 708.7780166 728.4118187 557.9919901 557.6722825 668.368247 604.1734942 583.6887889 630.5749546 576.0204652 514.1856055 1.3784478 1.41663207 1.085195665 1.08457389 1.29985795 1.175010517 1.135171391 1.226356685 1.120257858 1 9.006145413 -5.754321435 24.99996405 1.153580079 1.397540051 0.625515408 0.078966034 104.4237172 366752.6496 0.019947215 0.050456734 1.76E-06 5.754321435 0.243959972 SPRS(ph)PQLSDFGLER ddPTM_K562_Paclitaxel_30min_R1 3 SPRSPQLSDFGLER 14 1 Q8IX90-3;Q8IX90 Q8IX90-3 SKA3 Spindle and kinetochore-associated protein 3 1 S(0.352)PRS(0.646)PQLS(0.002)DFGLER;S(0.008)PRS(0.992)PQLSDFGLER;S(0.118)PRS(0.882)PQLSDFGLER 113.52 0.0018949 396203000 2171.39 1765.79 2082.88 2390.61 1800.21 1809.21 1532.04 2361.8 2418.01 2224.72 TRUE FALSE 2201.796159 1958.584924 1557.031183 2237.286975 2045.42908 2130.047991 1822.736592 2161.150348 2650.270664 1771.320843 1.243025039 1.105720023 0.879022674 1.263061395 1.154747932 1.202519577 1.029026785 1.220078427 1.496211528 1 10.79060984 -8.516089994 24.96544316 1.284785477 1.124483817 0.095386844 0.153551393 565.5256946 2079747.843 0.092694537 0.037919698 3.05E-09 8.516089994 -0.16030166 SPS(ph)DLLDASAVSATSR ddPTM_K562_Paclitaxel_30min_R1 1 SPSDLLDASAVSATSR 16 0 K7EJ05;K7EQ84;K7EPP9;K7ELY2;X6R2W0;K7EIY4;Q5U8S2;O60499-2;O60499 K7EJ05 STX10 Syntaxin-10 1 S(0.414)PS(0.586)DLLDASAVSATSR 142.57 2.40E-08 16696000 348.35 306.28 420.54 511.79 406.43 434.4 318.35 478.11 271.02 473.21 TRUE FALSE 353.2279748 339.7206862 314.3694758 478.9660801 461.7926469 511.4347407 378.7552506 437.4915712 297.0526819 376.7695422 0.937517329 0.901667062 0.834381341 1.27124416 1.225663423 1.357420607 1.005270353 1.161164909 0.788420105 1 8.557538533 -6.24921741 24.95082472 1.132377917 0.892236414 0.304597735 0.153926177 896.3807086 1829934.269 0.042856347 0.073518447 5.63E-07 6.24921741 -0.240141503 SPS(ph)FASEWDEIEK ddPTM_K562_Paclitaxel_30min_R1 2 SPSFASEWDEIEK 13 0 A0A3B3ISP1;Q92625 A0A3B3ISP1 ANKS1A Ankyrin repeat and SAM domain-containing protein 1A 1 S(0.04)PS(0.96)FASEWDEIEK;S(0.048)PS(0.941)FAS(0.011)EWDEIEK 163.62 0.00065628 39747000 2468.1 2231.6 3200 2679.4 2039.42 1606.23 2060.32 3284.7 2269.2 3754.9 TRUE FALSE 2502.661015 2475.253635 2392.120423 2507.555277 2317.223532 1891.072338 2451.254964 3005.644233 2487.166799 2989.649319 0.837108553 0.82794113 0.800134119 0.838745622 0.775082053 0.632539852 0.819913877 1.005350097 0.831925933 1 11.54576055 -8.107092179 6.1645653 0.937185158 0.784946504 0.503295456 0.071286731 0.211301343 10.38348917 0.034862965 0.019993035 7.81E-09 8.107092179 -0.152238654 SPS(ph)FGGASEASAR ddPTM_K562_Paclitaxel_30min_R1 2 SPSFGGASEASAR 13 0 H7C2F7;Q8WVT3 H7C2F7 TRAPPC12 Trafficking protein particle complex subunit 12 1 S(0.003)PS(0.991)FGGAS(0.005)EASAR;S(0.177)PS(0.748)FGGAS(0.064)EAS(0.011)AR 154.23 0.00037012 179236000 1144.35 1024.35 1360.63 1122.76 1181.34 978.29 1002.06 1071.96 1159.89 1669.07 TRUE FALSE 1160.374431 1136.191997 1017.122128 1050.751199 1342.258508 1151.775996 1192.195654 980.890307 1271.302617 1328.912618 0.87317587 0.854978711 0.765379239 0.790684944 1.010042715 0.866705591 0.897121179 0.738114978 0.956648767 1 10.37603053 -14.99999983 0.222360572 1.73225188 0.840817942 0.238328315 0.077743676 241.0114788 2.412909274 79.03672196 0.149594131 1.00E-15 14.99999983 -0.891433938 SPS(ph)GSAFGSQENLR ddPTM_K562_Paclitaxel_30min_R1 4 SPSGSAFGSQENLR 14 0 Q96N67-4;Q96N67-3;Q96N67-5;Q96N67-2;Q96N67-6;Q96N67;A0A1B0GWE0 Q96N67-4 DOCK7 Dedicator of cytokinesis protein 7 1 S(0.105)PS(0.538)GS(0.342)AFGS(0.015)QENLR;S(0.03)PS(0.862)GS(0.084)AFGS(0.024)QENLR;S(0.233)PS(0.762)GS(0.005)AFGSQENLR;S(0.065)PS(0.918)GS(0.017)AFGSQENLR 174.21 3.84E-06 199081000 1594.46 1444.13 2364.86 1526.12 1987.91 1733.1 1757.84 2068.12 1724.97 2087.68 TRUE FALSE 1616.787359 1601.804997 1767.821845 1428.241494 2258.696998 2040.440951 2091.380963 1892.420297 1890.661076 1662.20967 0.972673537 0.963660016 1.063537216 0.859242681 1.358852038 1.227547275 1.258193236 1.138496744 1.137438381 1 10.69888666 -6.754149981 24.99996942 1.199291018 0.971752691 0.54414502 0.099053312 126.0932566 432451.3166 0.028852247 0.036481585 1.76E-07 6.754149981 -0.227538327 SPS(ph)MPENLNRPR ddPTM_K562_Paclitaxel_30min_R1 4 SPSMPENLNRPR 12 1 D6RJC2;H0Y999;P30307-4;P30307-3;P30307-2;P30307 D6RJC2 CDC25C M-phase inducer phosphatase 3 1 S(0.023)PS(0.977)MPENLNRPR;S(0.055)PS(0.945)MPENLNRPR;S(0.008)PS(0.992)MPENLNRPR;S(0.026)PS(0.974)MPENLNRPR 106.55 0.0050047 503166000 5485.7 5258.7 6565.5 5590 4771.6 4903.9 4734.2 5608.9 5252.4 6189.6 TRUE FALSE 5562.516725 5832.86265 4907.958324 5231.48242 5421.572704 5773.537811 5632.489736 5132.388935 5756.916488 4928.156122 1.128721694 1.183579113 0.995901551 1.061549653 1.100121946 1.171541174 1.142920313 1.041442034 1.168168448 1 12.26683225 -11.54625753 3.016680557 0.995377214 1.108202752 0.242083664 0.058502937 23274368.6 25541402.32 870424.1528 0.015018506 2.84E-12 11.54625753 0.112825537 SPS(ph)PAHLPDDPK ddPTM_K562_Paclitaxel_30min_R1 1 SPSPAHLPDDPK 12 0 A0A087X183;H0Y641;H0Y4V9;Q92615 A0A087X183 LARP4B La-related protein 4B 1 S(0.001)PS(0.999)PAHLPDDPK 86.497 0.016739 43112000 3897.9 3656.1 8049 4955.9 4239.9 3283.6 2900.8 5218.7 2467.1 6113.4 TRUE FALSE 3952.482626 4055.285362 6016.930401 4638.050756 4817.446162 3865.900356 3451.211657 4775.338861 2704.075978 4867.485724 0.812017302 0.833137597 1.236147519 0.952863761 0.989719628 0.794229418 0.70903375 0.981068899 0.555538553 1 12.24896103 -7.263822756 24.38760965 0.80060715 0.97187813 0.192207838 0.160041098 245.4551599 2511576.714 0.054282428 0.050148096 5.45E-08 7.263822756 0.17127098 SPS(ph)PAHLPDDPKVAEK ddPTM_K562_Paclitaxel_30min_R1 2 SPSPAHLPDDPKVAEK 16 1 A0A087X183;H0Y641;H0Y4V9;Q92615 A0A087X183 LARP4B La-related protein 4B 1 S(0.151)PS(0.849)PAHLPDDPKVAEK;S(0.133)PS(0.867)PAHLPDDPKVAEK 112.01 0.0006841 75951000 5225.3 3617.9 13188.7 5793.8 4625.5 3599.2 3172.1 5198.7 4842 8155.5 TRUE FALSE 5298.470321 4012.914557 9859.049569 5422.2116 5255.57141 4237.467585 3773.989416 4757.037986 5307.095735 6493.404623 0.815977231 0.617998537 1.518317453 0.835033686 0.809370695 0.652580246 0.581203488 0.732595343 0.817305565 1 12.6647594 -6.513739176 24.45809656 0.744997637 0.985685734 0.142994745 0.236138359 589.8589016 1578502.945 0.06964263 0.095118139 3.06E-07 6.513739176 0.240688098 SPS(ph)PFTHTHLAQGYR ddPTM_K562_Paclitaxel_30min_R1 1 SPSPFTHTHLAQGYR 15 0 P38398-8;P38398-4;P38398;P38398-7;Q5YLB2 P38398-8 BRCA1 Breast cancer type 1 susceptibility protein 1 S(0.022)PS(0.968)PFT(0.01)HTHLAQGYR 94.569 0.0065582 8804600 707.18 848.29 773.42 910.86 629.07 587.96 758.19 1026 646.05 901.23 TRUE FALSE 717.0827018 940.9091709 578.1605555 852.4415165 714.7599842 692.2264506 902.0525945 938.8348959 708.1059891 717.5588313 0.999336459 1.31126415 0.805732618 1.187974392 0.996099488 0.964696441 1.257113083 1.308373411 0.986826387 1 9.48695331 -7.758935131 24.99833196 1.163775996 1.049835522 0.06895019 0.157306673 154.5605112 1542902.239 0.059941005 0.044214604 1.74E-08 7.758935131 -0.113940475 SPS(ph)PGLFR ddPTM_K562_Paclitaxel_30min_R1 1 SPSPGLFR 8 0 E7ESG2;Q9HAW4-2;Q9HAW4-3;Q9HAW4 E7ESG2 CLSPN Claspin 1 S(0.282)PS(0.718)PGLFR 92.239 0.01555 296930000 4649.1 4581.3 5971.4 4766 4578.1 4739.2 4163 5168.6 4087.9 5470.8 TRUE FALSE 4714.201744 5081.501827 4463.846217 4460.330092 5201.714728 5579.630578 4952.907518 4729.495169 4480.56106 4355.847957 1.082269581 1.166593021 1.024793854 1.023986635 1.194191069 1.280951639 1.137070799 1.085780591 1.028631188 1 12.08873788 -8.681233196 2.442053015 1.0047842 1.130857928 0.286223616 0.072877802 0.424507276 4.684179923 0.073738629 0.021895359 2.08E-09 8.681233196 0.126073729 SPS(ph)PISNQPSPR ddPTM_K562_Paclitaxel_30min_R1 2 SPSPISNQPSPR 12 0 F6SS63;Q8N5C8-2;Q8N5C8 F6SS63 TAB3 TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 1 S(0.09)PS(0.906)PIS(0.005)NQPSPR;S(0.012)PS(0.731)PIS(0.256)NQPSPR 98.582 0.010469 31223000 1507.82 1172.59 2413.6 1628.21 1629.99 1567.38 1413.75 2118.25 1461.32 2550.2 TRUE FALSE 1528.934132 1300.617342 1804.256829 1523.783898 1852.022234 1845.332836 1682.001682 1938.291441 1601.686315 2030.46784 0.752995985 0.640550575 0.88859168 0.750459509 0.912116015 0.908821504 0.828381346 0.954603369 0.788826242 1 10.98759646 -2.892953102 0.213718882 0.956326365 2.85E-17 0.450623322 0.077415076 30.72383976 0.537525321 0.123786831 9.284559238 0.001279519 2.892953102 -0.956326365 SPS(ph)PLRGNVVPS(ph)PLPTRR ddPTM_K562_Paclitaxel_30min_R1 1 SPSPLRGNVVPSPLPTRR 18 2 H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9;Q9Y2V2 H3BTK3 CARHSP1 Calcium-regulated heat stable protein 1 2 S(0.43)PS(0.57)PLRGNVVPS(0.913)PLPT(0.087)RR 69.071 0.01414 8333900 1971.4 1843.3 2176.1 1717.4 1905.7 1323.2 1448.9 1637.2 2061.2 1938.7 TRUE FALSE 1999.005682 2044.557728 1626.716641 1607.253651 2165.288604 1557.850941 1723.821211 1498.109641 2259.18747 1543.591876 1.295035115 1.324545535 1.053851518 1.041242621 1.402759782 1.009237588 1.116759707 0.970534805 1.46359119 1 10.59207564 -5.748194636 24.8376329 1.132659505 1.30979045 0.164130286 0.160262872 373.8990815 701153.3741 0.03904336 0.101969492 1.79E-06 5.748194636 0.177130944 SPS(ph)PPTIQSK ddPTM_K562_Paclitaxel_30min_R1 1 SPSPPTIQSK 10 0 Q14687-3;Q14687;Q14687-2;H7C3B5;H0Y613 Q14687-3 GSE1 Genetic suppressor element 1 1 S(0.111)PS(0.888)PPT(0.001)IQSK 93.345 0.014661 7527400 2502.8 2190 3977 2489 1855.9 2154.2 1901 2772.9 2475.5 3229.6 TRUE FALSE 2537.846922 2429.111606 2972.957163 2329.36668 2108.705001 2536.217124 2261.704826 2537.324837 2713.282836 2571.405747 0.98694923 0.944662898 1.15616027 0.905872861 0.820059224 0.986315414 0.879559684 0.986746195 1.055174913 1 11.32834156 SPS(ph)PQQQQSEAPTQTFPRTPQEK ddPTM_K562_Paclitaxel_30min_R1 1 SPSPQQQQSEAPTQTFPRTPQEK 23 1 A6NNH2 A6NNH2 FAM90A27P Protein FAM90A27P 1 S(0.121)PS(0.879)PQQQQSEAPTQTFPRTPQEK 59.512 0.009167 57161000 699.06 585.19 1258.2 818.39 534.87 487.78 436.17 874.4 466.43 888.09 TRUE FALSE 708.8489968 649.0830232 940.5518488 765.9021284 607.7283494 574.2809342 518.9309805 800.1142622 511.2326856 707.0967705 1.002478057 0.91795501 1.330160012 1.083164512 0.859469842 0.812167384 0.73388962 1.131548461 0.723002433 1 9.46576386 -6.758037469 23.06813916 0.872891897 1.089242115 0.314005541 0.149553148 40.519545 274753.1116 0.044995526 0.055636321 1.75E-07 6.758037469 0.216350218 SPSDLSPES(ph)PMLSSPPK ddPTM_K562_Paclitaxel_30min_R1 1 SPSDLSPESPMLSSPPK 17 0 A0A0J9YXY4;A0A0J9YW36;Q9NZ72-2;Q9NZ72 A0A0J9YXY4 STMN3 Stathmin-3 1 SPSDLS(0.007)PES(0.982)PMLS(0.01)SPPK 148.52 7.23E-30 0 758.06 687.4 1140.5 912.08 791.58 604.38 628.29 946.55 701.71 933.42 TRUE FALSE 768.6751788 762.4526566 852.5666695 853.5832711 899.4065976 711.5583071 747.5047476 866.1346693 769.1123808 743.1884916 1.034293705 1.025920968 1.147174208 1.1485421 1.210199845 0.957439889 1.005807754 1.16543068 1.034881984 1 9.537584351 -7.268419229 24.9998247 1.041369967 1.112223876 0.236423625 0.071494544 1032.76271 3699043.415 0.027041374 0.024380748 5.39E-08 7.268419229 0.070853909 SPSDSSTAS(ph)TPVAEQIER ddPTM_K562_Paclitaxel_30min_R1 2 SPSDSSTASTPVAEQIER 18 0 Q16643;Q16643-2;Q16643-3;D6R9Q9 Q16643 DBN1 Drebrin 1 SPSDS(0.027)S(0.132)T(0.019)AS(0.411)T(0.411)PVAEQIER;SPSDSS(0.007)T(0.041)AS(0.476)T(0.476)PVAEQIER 270.95 2.01E-114 62437000 2519.91 1910.04 2703.61 2090.15 1920.15 2010.95 2045.77 2384.5 1668.26 2881.1 TRUE FALSE 2555.196515 2118.584627 2021.050218 1956.097134 2181.706938 2367.563747 2433.944178 2181.921841 1828.503827 2293.930239 1.113894604 0.923561053 0.881042581 0.852727385 0.951078155 1.03209928 1.061036703 0.951171838 0.797105246 1 11.1636058 -12.38001697 2.831676291 1.580364956 0.951290221 0.02449515 0.091763781 79409273.39 121313017.8 238884384.6 0.023181714 4.17E-13 12.38001697 -0.629074734 SPSLSPSPPS(ph)PLEK ddPTM_K562_Paclitaxel_30min_R1 2 SPSLSPSPPSPLEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 S(0.05)PS(0.013)LS(0.004)PS(0.13)PPS(0.804)PLEK;SPSLS(0.001)PS(0.203)PPS(0.796)PLEK 146.78 1.61E-05 35547000 3624.3 3683.3 6564.9 4145.8 3332.3 3181.8 3474.4 4891.9 2204.4 5654 TRUE FALSE 3675.051382 4085.45515 4907.509801 3879.906944 3786.215676 3746.047555 4133.649262 4476.302561 2416.14247 4501.711696 0.816367557 0.907533717 1.090143068 0.861873706 0.841061341 0.832138486 0.918239448 0.994355672 0.536716394 1 12.13625795 -6.479645805 24.99486578 0.855236349 0.941806967 0.072555857 0.136155351 1281.830511 741081.9092 0.037383086 0.055443651 3.31E-07 6.479645805 0.086570619 SPSPGGPQLS(ph)PQLPR ddPTM_K562_Paclitaxel_30min_R1 2 SPSPGGPQLSPQLPR 15 0 Q9HCH0;H7C1V4;Q9HCH0-2 Q9HCH0 NCKAP5L Nck-associated protein 5-like 1 S(0.001)PS(0.001)PGGPQLS(0.998)PQLPR;SPS(0.001)PGGPQLS(0.999)PQLPR 157.83 5.08E-05 282870000 2050.27 2187.7 2610.9 2229.53 2090.76 1998.79 2092.47 2762.3 1701.64 2733.2 TRUE FALSE 2078.980106 2426.560484 1951.746004 2086.537925 2375.556909 2353.247342 2489.505259 2527.625373 1865.090125 2176.17234 0.955337988 1.115058968 0.896871065 0.958810976 1.091621682 1.081369935 1.143983504 1.161500552 0.857050745 1 11.0875771 -6.76318555 24.99748529 1.069671667 0.985011926 0.117512499 0.095332748 91.10787915 1304270.741 0.028935696 0.034544697 1.73E-07 6.76318555 -0.084659741 SPSPLPGHPPAPARS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 SPSPLPGHPPAPARSPR 17 1 O60307 O60307 MAST3 Microtubule-associated serine/threonine-protein kinase 3 1 SPSPLPGHPPAPARS(1)PR;SPSPLPGHPPAPARS(1)PR 97.488 0.0019958 17126900 2152.88 2241.5 3064.5 2940.7 2245.57 1803.7 2283.1 2846.2 2636 2981.1 TRUE FALSE 2183.026962 2486.23455 2290.829074 2752.096664 2551.454652 2123.56087 2716.306306 2604.397545 2889.199578 2373.550184 0.919730696 1.04747503 0.965148784 1.159485349 1.074952899 0.894677047 1.14440652 1.09725826 1.217248153 1 11.21283084 -7.850217327 24.5815312 1.122835175 1.019551023 0.247998914 0.0877899 27.26676268 7542.585793 0.036312507 0.024481893 1.41E-08 7.850217327 -0.103284152 SPSPPT(ph)QHTGQPPGQPSAPSQLSAPR ddPTM_K562_Paclitaxel_30min_R1 1 SPSPPTQHTGQPPGQPSAPSQLSAPR 26 0 Q68EM7-7;Q68EM7-3;Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;I3L460 Q68EM7-7 ARHGAP17 Rho GTPase-activating protein 17 1 S(0.046)PS(0.176)PPT(0.716)QHT(0.062)GQPPGQPSAPSQLSAPR 72.158 0.00051467 274270000 2074.5 2028 2913.6 2524.8 2312 2661.3 2243 2528.8 2155.1 2808 TRUE FALSE 2103.5494 2249.423898 2178.025645 2362.870629 2626.933542 3133.244188 2668.597541 2313.962656 2362.106984 2235.728059 0.94087892 1.006125897 0.974190773 1.056868531 1.174979011 1.401442441 1.19361455 1.034992895 1.056526967 1 11.126529 -6.548463321 3.305091449 1.160068595 0.978984331 0.331218782 0.106820114 0.292863795 6.663176506 0.035568532 0.049946332 2.83E-07 6.548463321 -0.181084264 SPSPPTQHT(ph)GQPPGQPSAPSQLSAPR ddPTM_K562_Paclitaxel_30min_R1 1 SPSPPTQHTGQPPGQPSAPSQLSAPR 26 0 Q68EM7-7;Q68EM7-3;Q68EM7-2;Q68EM7-6;Q68EM7-5;Q68EM7;I3L460 Q68EM7-7 ARHGAP17 Rho GTPase-activating protein 17 1 S(0.002)PS(0.002)PPT(0.048)QHT(0.948)GQPPGQPSAPSQLSAPR 52.059 0.020659 19084000 3756.1 3264.4 5969 4351.4 3165.3 3376.2 2555.5 3933.6 4516.8 4708.2 TRUE FALSE 3808.696989 3620.818231 4462.052126 4072.32068 3596.467449 3974.921666 3040.392784 3599.416127 4950.658822 3748.666256 1.016013891 0.965895064 1.190303917 1.086338554 0.959399211 1.060356243 0.811059875 0.960185805 1.320645393 1 11.87216167 -4.381397434 16.02898764 1.0317828 1.039362383 0 0.133059173 0 0 0.030548136 0 4.16E-05 4.381397434 0.007579584 SPSPRHPDVS(ph)MVDPEALAIEQNLGK ddPTM_K562_Paclitaxel_30min_R1 1 SPSPRHPDVSMVDPEALAIEQNLGK 25 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 S(0.095)PS(0.434)PRHPDVS(0.471)MVDPEALAIEQNLGK 73.459 0.00024053 6179100 1355.4 1089.9 2747.2 1590 1182.9 1195.5 1048.6 1897.4 2709.9 2059.7 TRUE FALSE 1374.379782 1208.898968 2053.635383 1488.024517 1344.031007 1407.505139 1247.566376 1736.204027 2970.198003 1639.932009 0.838071197 0.737164078 1.252268613 0.90736964 0.819565079 0.858270423 0.760742743 1.058704883 1.81117143 1 10.67942029 -8.536038069 24.66852572 1.4153703 0.889801441 0.457274401 0.22570773 166.458673 312036.3466 0.14346446 0.054294345 2.91E-09 8.536038069 -0.525568859 SPSS(ph)DLDTDAEGDDFELLDQSELSQLDPASSR ddPTM_K562_Paclitaxel_30min_R1 1 SPSSDLDTDAEGDDFELLDQSELSQLDPASSR 32 0 K7EQI9;Q86VR2-2;Q86VR2 K7EQI9 FAM134C Protein FAM134C 1 S(0.163)PS(0.163)S(0.674)DLDTDAEGDDFELLDQSELSQLDPASSR 201.61 3.25E-58 36271000 416.53 496.15 564.28 528.88 496.87 178.63 368.86 558.75 578.14 433.42 TRUE FALSE 422.3627051 550.3213349 421.8205351 494.960004 564.5521061 210.3075224 438.8492594 511.2806999 633.6729302 345.0887661 1.223924818 1.594723993 1.222353715 1.434297643 1.635961995 0.609430219 1.271699639 1.48159184 1.836260674 1 8.430823699 SPSS(ph)DSWTCADTSTERR ddPTM_K562_Paclitaxel_30min_R1 1 SPSSDSWTCADTSTERR 17 1 F8VWH9;Q8N6T3-5;Q8N6T3;Q8N6T3-2;E5RHH7;Q8N6T3-4;H0YIQ0 F8VWH9 ARFGAP1 ADP-ribosylation factor GTPase-activating protein 1 1 S(0.108)PS(0.16)S(0.6)DS(0.131)WTCADTSTERR 75.682 0.013667 23887000 273.49 260.35 202.28 389.74 314.92 150.88 171.57 332.86 285.8 380.03 TRUE FALSE 277.3197038 288.7758934 151.2119122 364.7438208 357.8174356 177.6364495 204.1245118 304.5814654 313.252367 302.5796774 0.916517944 0.954379673 0.49974246 1.205447187 1.182556075 0.587073299 0.674614084 1.006615738 1.035272328 1 8.241171283 -8.479444264 24.69725874 1.018739176 0.863264993 0.094848652 0.217903043 1026.918513 583917.6821 0.125661769 0.060358944 3.32E-09 8.479444264 -0.155474183 SPSSESS(ph)PQHPTPPARPR ddPTM_K562_Paclitaxel_30min_R1 1 SPSSESSPQHPTPPARPR 18 1 O14733;O14733-4;O14733-3;O14733-2 O14733 MAP2K7 Dual specificity mitogen-activated protein kinase kinase 7 1 S(0.006)PS(0.033)S(0.033)ES(0.177)S(0.75)PQHPTPPARPR 119.5 7.99E-05 13833000 231.02 269.18 417.35 426.25 300.86 421.42 375.14 450.04 289.68 518.86 TRUE FALSE 234.2549928 298.5699827 311.9848308 398.9122328 341.8422256 496.15292 446.3208566 411.8062929 317.5050583 413.1160472 0.567044041 0.722726664 0.755199012 0.965617859 0.827472639 1.201001325 1.08037647 0.996829573 0.768561426 1 8.690403291 -5.931635994 1.02866964 1.001482489 0.555446689 0.600926504 0.114980784 0.555654382 0.923209906 0.042894043 0.216431079 1.17E-06 5.931635994 -0.446035799 SPSSESSPQHPT(ph)PPARPR ddPTM_K562_Paclitaxel_30min_R1 2 SPSSESSPQHPTPPARPR 18 1 O14733;O14733-4;O14733-3;O14733-2 O14733 MAP2K7 Dual specificity mitogen-activated protein kinase kinase 7 1 SPSSESSPQHPT(1)PPARPR;SPSSESS(0.002)PQHPT(0.998)PPARPR 97.767 0.0013965 37240000 4011.8 3623.8 4590 3300.1 3139.8 3692.9 3048.2 4194.4 2317.7 4868.8 TRUE FALSE 4067.977577 4019.458739 3431.197732 3088.446357 3567.493917 4347.783964 3626.580037 3838.059539 2540.325441 3876.535887 1.049384733 1.036868703 0.885119558 0.796702635 0.920278832 1.121564224 0.935520821 0.990074554 0.655308119 1 11.92055231 -8.66089137 22.69547808 0.825774515 0.96342403 0.186976743 0.115969123 9.436062764 2103.982277 0.078928047 0.029831891 2.18E-09 8.66089137 0.137649515 SPSSLSANIISS(ph)PKGS(ph)PSSSR ddPTM_K562_Paclitaxel_30min_R1 1 SPSSLSANIISSPKGSPSSSR 21 1 K7EQL6;Q8NFA0 K7EQL6 USP32 Ubiquitin carboxyl-terminal hydrolase;Ubiquitin carboxyl-terminal hydrolase 32 2 SPSSLS(0.001)ANIIS(0.185)S(0.814)PKGS(0.768)PS(0.152)S(0.064)S(0.015)R 61.417 0.023307 8396300 1178.9 949.36 2123.7 1346.4 930.01 942.78 1181.6 1473.9 1108.3 1828 TRUE FALSE 1195.408237 1053.014335 1587.545669 1260.04793 1056.693107 1109.968796 1405.802432 1348.682995 1214.757167 1455.452597 0.821330932 0.72349614 1.090757386 0.865743023 0.726023719 0.762627926 0.965886787 0.92664165 0.83462503 1 10.50725214 -9.915595738 0.423524708 1.018854396 0.843381575 0.142117518 0.107762967 8.531303652 2.15021489 0.412095846 0.074504121 1.21E-10 9.915595738 -0.175472821 SPSTTY(ph)LHTPTPSEDAAIPSK ddPTM_K562_Paclitaxel_30min_R1 1 SPSTTYLHTPTPSEDAAIPSK 21 0 Q13111 Q13111 CHAF1A Chromatin assembly factor 1 subunit A 1 S(0.131)PS(0.162)T(0.162)T(0.093)Y(0.289)LHT(0.162)PTPSEDAAIPSK 92.133 0.0015709 19009000 1393.7 1243.4 2617.7 2155.9 1373.1 1095.5 1300.3 2084.9 1067.2 2479.5 TRUE FALSE 1413.2161 1379.158617 1956.82926 2017.630223 1560.139467 1289.771543 1547.025137 1907.774731 1169.709328 1974.176539 0.715850924 0.698599436 0.991212904 1.022011043 0.790273532 0.65332128 0.783630596 0.966364808 0.592504928 1 10.94703529 -6.941695337 24.99997741 0.787831965 0.861569923 0.033550227 0.149497405 283.0637838 121370.5267 0.047764142 0.054159441 1.14E-07 6.941695337 0.073737958 SPSYT(ph)NDSTATFIIDGMHCK ddPTM_K562_Paclitaxel_30min_R1 1 SPSYTNDSTATFIIDGMHCK 20 0 Q04656-5;Q04656;Q04656-2;Q04656-3 Q04656-5 ATP7A Copper-transporting ATPase 1 1 S(0.065)PS(0.312)Y(0.27)T(0.343)NDS(0.01)T(0.001)ATFIIDGMHCK 100.45 0.00069004 6731300 937.02 734.14 1459.6 854.63 753.22 863.13 703.31 1044.2 902.8 1237 TRUE FALSE 950.141171 814.2958879 1091.105928 799.817857 855.8213161 1016.193987 836.759401 955.4886923 989.5179738 984.898721 0.964709519 0.826781344 1.107835663 0.812081324 0.868943474 1.03177511 0.849589286 0.970139033 1.004690079 1 9.943831567 -8.512118035 21.8886866 0.997368379 0.923296152 0.119065242 0.088129948 216.7530302 440931.1152 0.050749911 0.021896709 3.08E-09 8.512118035 -0.074072227 SPT(ph)GPSNSFLANMGGTVAHK ddPTM_K562_Paclitaxel_30min_R1 1 SPTGPSNSFLANMGGTVAHK 20 0 H0Y6J6;Q5W012;Q96I25 H0Y6J6 RBM17 Splicing factor 45 1 S(0.419)PT(0.58)GPSNSFLANMGGTVAHK 168.45 6.94E-13 75984000 3164.2 3221.4 6142.2 4102.1 2880.7 2725.7 3252.2 4451.6 2153.6 5709.1 TRUE FALSE 3208.508562 3573.123346 4591.525644 3839.009666 3273.100111 3209.064624 3869.287972 4073.408794 2360.462903 4545.582286 0.705852047 0.786065045 1.010107255 0.844558392 0.720061788 0.705974377 0.851219432 0.896124751 0.519287245 1 12.1502494 -6.684696264 13.6574512 0.776572665 0.845484149 0.033053035 0.139386929 3.437243726 603.7321969 0.040701919 0.052544159 2.07E-07 6.684696264 0.068911483 SPT(ph)PPLFSLPEAR ddPTM_K562_Paclitaxel_30min_R1 2 SPTPPLFSLPEAR 13 0 J3KRD7;J3QQZ3;J3KT14;A0A087WWS1;Q96FV9-2;Q96FV9 J3KRD7 THOC1 THO complex subunit 1 1 S(0.024)PT(0.976)PPLFSLPEAR;S(0.104)PT(0.896)PPLFSLPEAR 193.11 0.0001265 55466000 3820.1 3373.8 4391.1 4288.8 3454.4 3304 3272.6 3465.3 3421.7 4100.1 TRUE FALSE 3873.593186 3742.162893 3282.512497 4013.735564 3924.947763 3889.91801 3893.558766 3170.901135 3750.369574 3264.497369 1.186581807 1.146321308 1.0055185 1.229511043 1.202313042 1.191582522 1.19269778 0.971329052 1.148835226 1 11.67264516 -8.247652467 24.7296837 1.0450616 1.163031711 0.387805946 0.071789982 742.8745284 1332502.496 0.034579863 0.019829672 5.65E-09 8.247652467 0.117970112 SPVCSCESASPCPKQS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 SPVCSCESASPCPKQSPR 18 1 Q5VYV7 Q5VYV7 SLX4IP Protein SLX4IP 1 SPVCSCESASPCPKQS(1)PR 69.255 0.019657 0 428.63 318.48 646.84 665.42 466.01 428.36 455.9 588.51 395.37 792.43 TRUE FALSE 434.6321424 353.2527234 483.537242 622.7429395 529.4884516 504.3236315 542.404645 538.5124021 433.3470551 630.932331 0.688872833 0.559890033 0.766385265 0.987020175 0.839215912 0.799330779 0.859687511 0.853518477 0.686836026 1 9.301341471 -5.955208544 5.677093056 0.853182374 0.629033091 0.527171566 0.088784551 0.140757401 10.79401307 0.022768464 0.047987364 1.11E-06 5.955208544 -0.224149283 SPVDIVTGGIS(ph)PVRDLDR ddPTM_K562_Paclitaxel_30min_R1 2 SPVDIVTGGISPVRDLDR 18 1 A0A494C0R9;E9PEM5;A0A494C1L5;P50851-2;P50851;H0Y9N9;H0YAC6;A0A494BZW2 A0A494C0R9 LRBA Lipopolysaccharide-responsive and beige-like anchor protein 1 SPVDIVT(0.007)GGIS(0.993)PVRDLDR;SPVDIVT(0.034)GGIS(0.966)PVRDLDR 88.57 0.0022416 45035000 4339.3 4233.4 5471.5 4760.2 3947.5 4433 4249.3 4906.2 3602.6 4772.2 TRUE FALSE 4400.063588 4695.616928 4090.152154 4454.902078 4485.216332 5219.130308 5055.582492 4489.387686 3948.645827 3799.62302 1.158026353 1.235811264 1.076462621 1.172458966 1.180437193 1.373591611 1.330548443 1.181535027 1.039220419 1 11.89164057 -8.762026452 3.621627699 1.005524911 1.218511078 0.489057103 0.080385636 0.208811942 5.457061872 0.080668395 0.023149224 1.73E-09 8.762026452 0.212986167 SPVQEASSATDTDTNS(ph)QEDPADTASVSSLSLSTGHTKR ddPTM_K562_Paclitaxel_30min_R1 1 SPVQEASSATDTDTNSQEDPADTASVSSLSLSTGHTKR 38 1 E7ER68;Q658Y4 E7ER68 FAM91A1 Protein FAM91A1 1 SPVQEASSATDT(0.005)DT(0.036)NS(0.957)QEDPADT(0.002)ASVSSLSLSTGHTKR 105.72 2.51E-19 11738000 1858.6 1458.4 2545.2 2158.5 1405.9 1381.5 952.67 1653.5 1638.5 1617.9 TRUE FALSE 1884.626134 1617.633044 1902.632781 2020.063471 1597.407382 1626.489628 1133.434159 1513.024854 1795.885246 1288.171092 1.463024707 1.255759467 1.477003166 1.568163953 1.240058399 1.262634784 0.879878586 1.174552716 1.394135653 1 10.33110851 -7.106560437 2.487374224 1.131991224 1.427421087 0.46039134 0.150500409 0.285399491 3.461200924 0.055762818 0.056902869 7.82E-08 7.106560437 0.295429862 SPVS(ph)TRPLPSASQK ddPTM_K562_Paclitaxel_30min_R1 1 SPVSTRPLPSASQK 14 1 Q8ND56-2;Q8ND56;Q8ND56-3 Q8ND56-2 LSM14A Protein LSM14 homolog A 1 S(0.173)PVS(0.413)T(0.413)RPLPSASQK 83.243 0.01802 678800000 4789.3 4080.7 8254.1 4837.5 3811.5 2973 3623.3 5251.2 4873.9 5648.9 TRUE FALSE 4856.364976 4526.244626 6170.25037 4527.244402 4330.690829 3500.219807 4310.80226 4805.077783 5342.059872 4497.651079 1.07975583 1.00635744 1.371882847 1.006579728 0.962878345 0.778232848 0.958456355 1.068352724 1.187744398 1 12.13495603 -6.491227076 24.85492725 0.983704223 1.146567386 0.237330827 0.129322327 931.1293241 731182.4609 0.038613845 0.057206566 3.23E-07 6.491227076 0.162863163 SPYGS(ph)RSPFEHSVEHK ddPTM_K562_Paclitaxel_30min_R1 1 SPYGSRSPFEHSVEHK 16 1 O14646 O14646 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 S(0.007)PY(0.262)GS(0.365)RS(0.365)PFEHSVEHK 101.43 0.0018324 95966000 3956.2 3742.3 7592.9 4811.8 3427.4 3542.4 3127.5 4704.7 3996.4 5386.7 TRUE FALSE 4011.599006 4150.89697 5675.978487 4503.192685 3894.269906 4170.594902 3720.926798 4305.006369 4380.272076 4288.887583 0.935347203 0.967826013 1.323415076 1.049967526 0.907990669 0.972418797 0.86757387 1.003758267 1.021307272 1 12.06638779 -6.601658768 6.884425288 0.959029012 1.084375124 0.198039685 0.105692279 0.341255997 24.49075096 0.032790697 0.042453346 2.50E-07 6.601658768 0.125346111 SQAKPGT(ph)PGGTGGPAPQY ddPTM_K562_Paclitaxel_30min_R1 2 SQAKPGTPGGTGGPAPQY 18 1 Q96L35;P54760 Q96L35 EPHB4 Receptor protein-tyrosine kinase;Ephrin type-B receptor 4 1 S(0.009)QAKPGT(0.513)PGGT(0.478)GGPAPQY(0.001);SQAKPGT(0.556)PGGT(0.444)GGPAPQY 177.41 5.61E-11 32050000 4665.4 4305.1 8183.9 5456 3762 3256.2 3439 4937 4680.9 5823.3 TRUE FALSE 4730.729994 4775.145377 6117.773228 5106.07658 4274.448091 3833.641351 4091.532297 4517.571034 5130.52136 4636.508264 1.0203217 1.02990119 1.319478556 1.101276282 0.921911026 0.826838028 0.882459831 0.974347672 1.106548521 1 12.17882301 -6.716340167 5.976250698 0.940930758 1.127979571 0.378101646 0.103481075 0.202540705 17.1231285 0.033137249 0.042289873 1.92E-07 6.716340167 0.187048812 SQAQQPQKEAALS(ph)S ddPTM_K562_Paclitaxel_30min_R1 1 SQAQQPQKEAALSS 14 1 Q3MHD2;Q3MHD2-2 Q3MHD2 LSM12 Protein LSM12 homolog 1 SQAQQPQKEAALS(0.598)S(0.402) 121.92 0.0021782 48815000 6608.2 5973.3 10838 7414.8 5935.7 5072.7 4572.6 6824.1 9653.7 7613.1 TRUE FALSE 6700.735188 6625.485094 8101.812857 6939.247915 6744.242832 5972.272121 5440.226979 6244.35011 10580.98102 6061.546041 1.105449854 1.093035514 1.33659182 1.144798352 1.112627502 0.985272087 0.897498253 1.030157994 1.745591133 1 12.5654701 -11.45262697 3.281034138 0.997695239 1.145677913 0.040515937 0.224163922 172552914.9 197736993.5 3614404.845 0.056127706 3.53E-12 11.45262697 0.147982674 SQASMVINS(ph)DTDDEEEVSAALTLAHLK ddPTM_K562_Paclitaxel_30min_R1 2 SQASMVINSDTDDEEEVSAALTLAHLK 27 0 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 SQAS(0.001)MVINS(0.807)DT(0.192)DDEEEVSAALTLAHLK;S(0.001)QAS(0.008)MVINS(0.983)DT(0.008)DDEEEVSAALTLAHLK 150.31 1.11E-31 35031000 4687.1 3548.2 8381.8 6501.5 4304.5 3900.2 3636.7 5788.7 2923 5872.9 TRUE FALSE 4752.733861 3935.604475 6265.710925 6084.52289 4890.845776 4591.845708 4326.74484 5296.913803 3203.76721 4675.999756 1.016410203 0.841660539 1.339972466 1.301223954 1.045946542 0.982002983 0.925309039 1.132787442 0.685151278 1 12.19105914 -7.155371941 3.497605401 0.951055042 1.123956975 0.20201659 0.166910426 0.458115747 10.41353778 0.06055517 0.060369171 6.99E-08 7.155371941 0.172901933 SQDADS(ph)PGSSGAPENLTFK ddPTM_K562_Paclitaxel_30min_R1 2 SQDADSPGSSGAPENLTFK 19 0 A8MQ02;J3KN01;P55196;P55196-5;P55196-3;H0Y8L4;H0Y948;H0Y8U8 A8MQ02 MLLT4 Afadin 1 SQDADS(0.999)PGS(0.001)SGAPENLTFK;S(0.003)QDADS(0.983)PGS(0.011)S(0.003)GAPENLTFK 167.9 2.28E-12 52344000 2642 2780.9 5424.6 3650.4 2558.2 2559.8 2291.1 3411.8 2098.09 4464.2 TRUE FALSE 2678.996151 3084.528066 4055.092639 3416.279683 2906.670151 3013.744589 2725.824265 3121.946294 2299.620919 3554.39359 0.753713983 0.867807121 1.140867644 0.961142765 0.817768229 0.847892759 0.766888696 0.878334438 0.646979818 1 11.79538773 -6.766969023 24.71228848 0.818335363 0.941376386 0.144673307 0.122597905 205.0601694 916424.5262 0.038091778 0.044424947 1.71E-07 6.766969023 0.123041023 SQDADSPGS(ph)SGAPENLTFKER ddPTM_K562_Paclitaxel_30min_R1 2 SQDADSPGSSGAPENLTFKER 21 1 A8MQ02;J3KN01;P55196;P55196-5;P55196-3;H0Y8L4;H0Y948;H0Y8U8 A8MQ02 MLLT4 Afadin 1 S(0.02)QDADS(0.042)PGS(0.93)S(0.008)GAPENLTFKER;S(0.001)QDADS(0.019)PGS(0.718)S(0.262)GAPENLTFKER 112.58 4.07E-05 48815000 1990.5 1671.95 3229.6 2327.2 1527.65 1595.38 1162.49 2265.6 2697.4 2448.1 TRUE FALSE 2018.373141 1854.499155 2414.247537 2177.943808 1735.741793 1878.298243 1383.066409 2073.123139 2956.497322 1949.175876 1.035500781 0.951427307 1.238599126 1.11736649 0.890500347 0.963637128 0.709564707 1.063589573 1.516793512 1 10.92864856 -8.540247489 24.88274082 1.268995256 0.987659714 0.273922207 0.174502801 294.4936839 421887.5555 0.117932542 0.044594675 2.88E-09 8.540247489 -0.281335541 SQDAT(ph)FSPGSEQAEK ddPTM_K562_Paclitaxel_30min_R1 1 SQDATFSPGSEQAEK 15 0 C9J0I9;Q86WB0-2;Q86WB0 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 SQDAT(0.955)FS(0.034)PGS(0.012)EQAEK 252.33 1.36E-269 0 3962.5 2686.2 5939.8 4275.6 3290 2697.6 2385.7 3768.5 2032.2 4543 TRUE FALSE 4017.987225 2979.4884 4440.224027 4001.382153 3738.1537 3175.981484 2838.374121 3448.342403 2227.40189 3617.134106 1.110820641 0.823715216 1.227553056 1.10622997 1.033457315 0.878038079 0.784702485 0.953335514 0.615791902 1 11.82063137 -7.286841247 3.312914241 0.834314377 1.062078146 0.391283887 0.134415692 0.262641904 5.999359904 0.047918699 0.04378836 5.17E-08 7.286841247 0.227763769 SQDATFS(ph)PGSEQAEKS(ph)PGPIVSR ddPTM_K562_Paclitaxel_30min_R1 1 SQDATFSPGSEQAEKSPGPIVSR 23 1 C9J0I9;Q86WB0-2;Q86WB0 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 2 S(0.034)QDAT(0.327)FS(0.638)PGS(0.223)EQAEKS(0.763)PGPIVS(0.015)R 68.326 0.0045841 80212000 5480.7 4813.3 9595.7 6080.8 4597.3 3894.6 3357.9 5968.8 4862.4 6704.9 TRUE FALSE 5557.446709 5338.832372 7173.146857 5690.804705 5223.530093 4585.252627 3995.043996 5461.713184 5329.455246 5338.4377 1.041024926 1.00007393 1.343679043 1.066005642 0.978475424 0.858912829 0.748354523 1.023092053 0.9983174 1 12.38220188 -6.782144675 3.200202163 0.917492716 1.125973 0.379172484 0.11364993 0.259775626 5.503278513 0.038262265 0.04693961 1.65E-07 6.782144675 0.208480284 SQDATFSPGS(ph)EQAEK ddPTM_K562_Paclitaxel_30min_R1 1 SQDATFSPGSEQAEK 15 0 C9J0I9;Q86WB0-2;Q86WB0 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 SQDAT(0.001)FS(0.069)PGS(0.93)EQAEK 117.48 0.0010717 26744000 2706.9 2086.3 4297.6 2961 2073.1 2178.6 1953.2 2934.3 1662.6 4046.5 TRUE FALSE 2744.804952 2314.089289 3212.617728 2771.094713 2355.491318 2564.944121 2323.809504 2685.0129 1822.300159 3221.821079 0.85194208 0.718255059 0.997143432 0.860101987 0.731105564 0.796116252 0.721272053 0.833383616 0.565611843 1 11.65366066 -6.749259207 24.41636038 0.764661998 0.856980477 0.098903056 0.119436687 366.8124566 735307.0556 0.033646183 0.043092938 1.78E-07 6.749259207 0.092318479 SQDATFSPGS(ph)EQAEKS(ph)PGPIVSR ddPTM_K562_Paclitaxel_30min_R1 1 SQDATFSPGSEQAEKSPGPIVSR 23 1 C9J0I9;Q86WB0-2;Q86WB0 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 2 S(0.001)QDAT(0.031)FS(0.151)PGS(0.884)EQAEKS(0.925)PGPIVS(0.008)R 56.335 0.022297 87371000 3279.7 2952.8 5638.7 3432.1 2525.1 2331.9 2259.9 3657.5 3361.4 3986.8 TRUE FALSE 3325.625919 3275.19669 4215.140446 3211.980468 2869.06137 2745.429724 2688.704228 3346.772546 3684.277489 3174.287972 1.047676187 1.031789403 1.327901087 1.011874315 0.903844073 0.864896238 0.847025932 1.054338036 1.16066265 1 11.6322173 -6.50698004 24.45026531 0.962467228 1.132805415 0.289821709 0.114423506 691.0979823 1062824.571 0.034783279 0.049900724 3.11E-07 6.50698004 0.170338187 SQDATFSPGSEQAEKS(ph)PGPIVSR ddPTM_K562_Paclitaxel_30min_R1 4 SQDATFSPGSEQAEKSPGPIVSR 23 1 C9J0I9;Q86WB0-2;Q86WB0 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 SQDATFS(0.006)PGS(0.006)EQAEKS(0.962)PGPIVS(0.026)R;SQDAT(0.001)FS(0.011)PGS(0.019)EQAEKS(0.966)PGPIVS(0.002)R;SQDAT(0.001)FS(0.006)PGS(0.038)EQAEKS(0.926)PGPIVS(0.029)R;SQDATFSPGS(0.001)EQAEKS(0.996)PGPIVS(0.003)R 111.01 1.33E-05 1077109000 5818.33 5155.14 10749.2 6894.5 5244.87 4826.08 3910.77 6505.39 6196.8 8254.1 TRUE FALSE 5899.804571 5717.995619 8035.431516 6452.317629 5959.31009 5681.917526 4652.818192 5952.716514 6792.030328 6571.909889 0.897730594 0.870066041 1.222693502 0.981802511 0.906785119 0.864576299 0.707985695 0.905781822 1.033494135 1 12.68209698 -6.774923625 4.306146342 0.885217586 1.001979743 0.109576092 0.120276524 0.40052942 17.28847905 0.0395191 0.047883118 1.68E-07 6.774923625 0.116762158 SQDNDT(ph)LMRDILGHELAAMR ddPTM_K562_Paclitaxel_30min_R1 1 SQDNDTLMRDILGHELAAMR 20 1 E5RH05;E5RIF7;O00295 E5RH05 TULP2 Tubby-related protein 2 1 S(0.173)QDNDT(0.827)LMRDILGHELAAMR 57.173 0.013313 34075000 1545.9 1310.2 1485.2 1455.2 1379.8 1344.4 1439.2 1677.6 1868.4 1811.9 TRUE FALSE 1567.54737 1453.252067 1110.242891 1361.869985 1567.75212 1582.810464 1712.280687 1535.077409 2047.868168 1442.633785 1.086587175 1.007360344 0.769594406 0.944016423 1.086729103 1.097167195 1.186912926 1.064079758 1.419534319 1 10.4944894 -7.016354402 2.050156366 1.163961201 0.943399513 0.356001536 0.127383446 0.355017364 2.994484013 0.04674647 0.050683566 9.63E-08 7.016354402 -0.220561688 SQDQDS(ph)EVNELSR ddPTM_K562_Paclitaxel_30min_R1 2 SQDQDSEVNELSR 13 0 E7ERS3;Q86VM9 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 SQDQDS(1)EVNELSR;S(0.006)QDQDS(0.994)EVNELSR 194.77 1.68E-41 13353000 2188.28 1965.84 3083.11 2553.84 1863.64 2119.87 2122.76 2434.7 1894.02 2882.41 TRUE FALSE 2218.922671 2180.477059 2304.740749 2390.048133 2117.49932 2495.79918 2525.542628 2227.857038 2075.949084 2294.97326 0.966862103 0.950110007 1.004256036 1.041427443 0.922668406 1.087506867 1.100467126 0.970755118 0.904563517 1 11.16426163 -5.783923635 9.860117277 1.007808408 0.958483437 0.08230355 0.059634447 0.706839231 298.8224244 0.01646262 0.035255937 1.64E-06 5.783923635 -0.049324972 SQDSYPGS(ph)PSLS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 SQDSYPGSPSLSPR 14 0 A0A0D9SEU5;Q6VN20;R4GMX8;Q6VN20-2;Q6VN20-3 A0A0D9SEU5 RANBP10 Ran-binding protein 10 2 S(0.003)QDS(0.03)Y(0.037)PGS(0.906)PS(0.026)LS(0.998)PR 110.34 0.01986 29216000 4378.3 4133.2 5513.2 4677.9 4355.4 3887.5 3685.5 4581.8 4369.7 5057 TRUE FALSE 4439.609708 4584.476754 4121.324474 4377.880432 4948.679218 4576.893542 4384.804385 4192.547491 4789.429209 4026.380624 1.102630407 1.138609879 1.023580446 1.0872992 1.229063936 1.136726497 1.089018847 1.041269538 1.189512283 1 11.97526785 -11.07490371 4.21415441 0.999987366 1.113491219 0.254241508 0.059169143 45154187.89 0.272931383 6281.772092 0.014735122 8.42E-12 11.07490371 0.113503853 SQDSYPGSPS(ph)LS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 SQDSYPGSPSLSPR 14 0 A0A0D9SEU5;Q6VN20;R4GMX8;Q6VN20-2;Q6VN20-3 A0A0D9SEU5 RANBP10 Ran-binding protein 10 2 S(0.001)QDS(0.005)Y(0.001)PGS(0.397)PS(0.598)LS(0.999)PR 112.12 0.017832 32132000 3019.9 3000.2 3532.6 3553.1 3023.8 2758.1 2705.6 3197 3449.7 3311.3 TRUE FALSE 3062.187917 3327.771982 2640.751439 3325.220069 3435.692753 3247.210309 3218.973476 2925.394895 3781.059099 2636.455242 1.161479197 1.26221448 1.001629535 1.261246546 1.303148522 1.231657666 1.220947515 1.109593991 1.434144998 1 11.36438379 -4.91391151 16.37749776 1.206637397 0.000865755 0.008526867 0.127326561 39586693.15 100330036.5 0.030011105 1709521327 1.22E-05 4.91391151 -1.205771642 SQDSYPGSPSLS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 SQDSYPGSPSLSPR 14 0 A0A0D9SEU5;Q6VN20;R4GMX8;Q6VN20-2;Q6VN20-3 A0A0D9SEU5 RANBP10 Ran-binding protein 10 1 SQDSYPGSPSLS(1)PR 236.75 1.30E-45 76370000 2047.8 1654.9 2352.2 1787.7 1695 1642.6 1341.8 1660.9 1570.1 1983.9 TRUE FALSE 2076.475518 1835.587579 1758.358018 1673.044923 1925.887697 1933.892047 1596.399545 1519.796178 1720.91512 1579.580091 1.314574379 1.162073129 1.113180666 1.059170683 1.219240295 1.224307686 1.010648054 0.962152022 1.08947633 1 10.62532537 -2.000000001 0.169968959 0.972955648 2.113874907 0.48232835 0.077527345 59.86101662 0.646977236 0.222573847 17.37203629 0.01 2.000000001 1.140919259 SQDSYPVS(ph)PRPFSS(ph)PS(ph)MSPSHGMNIHNLASGK ddPTM_K562_Paclitaxel_30min_R1 1 SQDSYPVSPRPFSSPSMSPSHGMNIHNLASGK 32 1 Q96S59-2;Q96S59-3;Q96S59 Q96S59-2 RANBP9 Ran-binding protein 9 3 S(0.002)QDS(0.056)Y(0.252)PVS(0.67)PRPFS(0.244)S(0.622)PS(0.644)MS(0.365)PS(0.145)HGMNIHNLASGK 66.014 0.0002214 34866000 1619 1291.1 2146.7 1630.8 1261.8 1308.5 1364.7 2174.2 1593.1 2456.4 TRUE FALSE 1641.670995 1432.066664 1604.739035 1526.207787 1433.678522 1540.544103 1623.644701 1989.488139 1746.124373 1955.784332 0.839392651 0.732221156 0.820509199 0.780355872 0.733045305 0.787686085 0.830175738 1.017232885 0.892800062 1 10.93353157 -8.099325998 4.030403094 0.965340708 0.780800504 0.785190446 0.043850317 0.100034998 2.853923649 0.020691549 0.01158831 7.96E-09 8.099325998 -0.184540205 SQDSYPVSPRPFS(ph)SPSMSPSHGMNIHNLASGK ddPTM_K562_Paclitaxel_30min_R1 1 SQDSYPVSPRPFSSPSMSPSHGMNIHNLASGK 32 1 Q96S59-2;Q96S59-3;Q96S59 Q96S59-2 RANBP9 Ran-binding protein 9 1 S(0.005)QDS(0.028)Y(0.023)PVS(0.021)PRPFS(0.217)S(0.217)PS(0.217)MS(0.217)PS(0.057)HGMNIHNLASGK 44.969 0.014142 24415000 2584.2 2942 4087 2860.1 2398.4 2248.6 3266.9 4935.2 3392.3 5929.4 TRUE FALSE 2620.386773 3263.217509 3055.186303 2676.665987 2725.102685 2647.357638 3886.777221 4515.923955 3718.145572 4720.985025 0.555050855 0.691215391 0.647150179 0.566971929 0.5772318 0.560763829 0.823297935 0.956563923 0.787578345 1 12.20487219 -7.879476908 4.30090551 0.901785604 0.603859692 0.831543949 0.065152224 0.086939738 2.828189291 0.028141042 0.018580253 1.32E-08 7.879476908 -0.297925913 SQDVAVS(ph)PQQQQCSK ddPTM_K562_Paclitaxel_30min_R1 4 SQDVAVSPQQQQCSK 15 0 Q96F86;H3BTD6;H3BQ37;H3BPW9 Q96F86 EDC3 Enhancer of mRNA-decapping protein 3 1 S(0.014)QDVAVS(0.986)PQQQQCSK;SQDVAVS(1)PQQQQCSK;S(0.001)QDVAVS(0.999)PQQQQCSK;SQDVAVS(1)PQQQQCSK 268.17 6.98E-90 713320000 13545.6 11061.2 23363.2 15572.6 11514.7 11109.1 9585.5 14751.7 13731.6 17607 TRUE FALSE 13735.28019 12268.89922 17464.87121 14573.84314 13083.19709 13079.14291 11404.29859 13498.45101 15050.58153 14018.68374 0.979783869 0.875181968 1.245828177 1.039601393 0.933268582 0.932979383 0.813507088 0.962890045 1.073608751 1 13.77506328 -6.758185772 24.48692418 0.942906896 1.038728336 0.123858296 0.105257142 131.9697538 993202.3071 0.033118775 0.040972775 1.75E-07 6.758185772 0.095821441 SQEDEIS(ph)SPVNKVR ddPTM_K562_Paclitaxel_30min_R1 1 SQEDEISSPVNKVR 14 1 Q5UIP0-2;Q5UIP0;H7C2B5 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 SQEDEIS(0.755)S(0.245)PVNKVR 140.03 1.52E-05 13662000 3665.8 3299.3 5922.4 4032 3155.4 2778.1 2407 3722.4 4662.3 4673.1 TRUE FALSE 3717.13251 3659.528732 4427.216873 3773.405567 3585.218901 3270.757029 2863.715685 3406.158886 5110.134747 3720.719655 0.9990359 0.983554009 1.189881873 1.01416014 0.963582112 0.8790657 0.769667148 0.915457009 1.373426439 1 11.86136598 -4.358559922 17.61480661 0.999412749 0.997507379 0 0.158818467 0 0 0.03742375 0 4.38E-05 4.358559922 -0.00190537 SQEDEISS(ph)PVNK ddPTM_K562_Paclitaxel_30min_R1 2 SQEDEISSPVNK 12 0 Q5UIP0-2;Q5UIP0;H7C2B5 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 SQEDEIS(0.025)S(0.975)PVNK;SQEDEIS(0.021)S(0.979)PVNK 219.84 1.36E-16 64499000 8154.3 7919.9 16114.4 10721.6 7685.8 7310.2 6265.9 9754.8 6326.7 11987.5 TRUE FALSE 8268.485358 8784.621465 12046.12042 10033.96456 8732.736082 8606.56133 7454.821815 8926.068852 6934.407803 9544.44092 0.866314269 0.920391413 1.262108543 1.051288876 0.914955224 0.901735513 0.781064274 0.935211284 0.726538921 1 13.22044498 -6.9307898 3.259934089 0.861896223 1.033838034 0.270854394 0.120254683 0.326752817 7.035381549 0.040968528 0.046394427 1.17E-07 6.9307898 0.17194181 SQEPSRPS(ph)PTPQGPPFGGSR ddPTM_K562_Paclitaxel_30min_R1 1 SQEPSRPSPTPQGPPFGGSR 20 1 Q9HCH0 Q9HCH0 NCKAP5L Nck-associated protein 5-like 1 S(0.004)QEPS(0.061)RPS(0.874)PT(0.061)PQGPPFGGSR 64.298 0.015724 9430400 635.44 655.43 1142.8 847.86 737.05 609.55 517.93 678.96 631.19 764.96 TRUE FALSE 644.3381205 726.9920639 854.286006 793.4820545 837.4486884 717.645134 616.2045137 621.2781101 691.8186197 609.0607321 1.05792097 1.193628198 1.402628607 1.302796277 1.37498388 1.178281731 1.011729178 1.020059376 1.135877891 1 9.250442282 -7.575930221 4.42681524 1.045463586 1.272806708 0.544641436 0.096500371 0.172145874 7.121892834 0.040346968 0.031248125 2.66E-08 7.575930221 0.227343122 SQESGYYDRMDYEDDRLR ddPTM_K562_Paclitaxel_30min_R1 1 SQESGYYDRMDYEDDRLR 18 2 D6REM6;A0A0R4J2E8;A8MXP9;P43243;D6R991 D6REM6 MATR3 Matrin-3 0 64.588 0.020986 128860000 1257.6 1046.5 1209.3 1122 1001.9 1234.2 1040.8 996.52 1464.9 1229.9 FALSE TRUE 1275.21028 1160.760409 903.9972586 1050.039942 1138.375742 1453.068041 1238.286367 911.8594059 1605.61019 979.2457049 1.302237297 1.185361757 0.923156726 1.072294662 1.162502666 1.483864605 1.264530812 0.931185505 1.639639758 1 9.935527085 -7.012934774 24.3155199 1.266652532 1.112029162 0.093766667 0.211838426 1028.744473 1933894.951 0.067120566 0.070324294 9.71E-08 7.012934774 -0.15462337 SQGDEAGGHGEDRPEPLS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 SQGDEAGGHGEDRPEPLSPK 20 1 A0A0A0MRN5;Q9NZT2-2;Q9NZT2 A0A0A0MRN5 OGFR Opioid growth factor receptor 1 SQGDEAGGHGEDRPEPLS(1)PK 53.536 0.029935 79523000 1437 1055.5 2398.2 1478.6 1002.1 1157.8 1155 1293.1 1318.4 2034.1 TRUE FALSE 1457.122434 1170.743059 1792.744749 1383.769214 1138.602986 1363.119574 1374.15522 1183.243084 1445.038211 1619.549303 0.899708598 0.722882012 1.106940521 0.854416232 0.70303694 0.841665994 0.848480017 0.730600224 0.892247126 1 10.66137667 -2.459004286 7.759939947 0.850218317 0.94741536 0 0.120347712 0 0 0.027017292 0 0.003475327 2.459004286 0.097197043 SQGHSLELPEPS(ph)GSPTSDR ddPTM_K562_Paclitaxel_30min_R1 1 SQGHSLELPEPSGSPTSDR 19 0 Q9H5Z6 Q9H5Z6 FAM124B Protein FAM124B 1 SQGHSLELPEPS(0.519)GS(0.326)PT(0.077)S(0.077)DR 98.067 0.00069989 9235200 959.33 777.63 1404 1099.4 980.73 1035 748.85 1002.7 898.41 1061.4 TRUE FALSE 972.7635798 862.5342732 1049.542836 1028.889405 1114.32203 1218.542718 890.9403782 917.5143763 984.7062947 845.0860974 1.151082218 1.020646625 1.241935986 1.217496546 1.318589944 1.441915471 1.054259893 1.085705207 1.165214169 1 9.72295452 SQHHSSTSNQETS(ph)DSEMEMEAEHYPNGVLGSMSTR ddPTM_K562_Paclitaxel_30min_R1 1 SQHHSSTSNQETSDSEMEMEAEHYPNGVLGSMSTR 35 0 A0A0D9SEU5;Q6VN20 A0A0D9SEU5 RANBP10 Ran-binding protein 10 1 SQHHSSTSNQET(0.167)S(0.665)DS(0.167)EMEMEAEHYPNGVLGSMSTR 76.823 1.20E-06 52210000 118.22 244.94 183.78 291.18 151.57 192.16 236.61 312.99 135.68 271.66 TRUE FALSE 119.8754447 271.6833775 137.382466 272.5050181 172.2164001 226.2368779 281.5055123 286.3995459 148.7126702 216.2955429 0.554220596 1.256074785 0.635160874 1.259873479 0.796208733 1.045961812 1.301485498 1.324112102 0.68754385 1 7.756860126 -5.243820803 23.56266718 1.040064549 0.554219703 0.258537737 0.243582389 2254.461714 3014959.211 0.05849422 1.602562759 5.70E-06 5.243820803 -0.485844846 SQIHDIVLVGGSTR ddPTM_K562_Paclitaxel_30min_R1 1 SQIHDIVLVGGSTR 14 0 P11142-2;P11142;E9PKE3;E9PN89;E9PNE6;A8K7Q2 P11142-2 HSPA8 Heat shock cognate 71 kDa protein 0 103.77 0.010719 22082000 2708.1 2561.8 3187.9 2789.4 2589.7 2309.2 2198 2969.5 1993 2776.9 FALSE TRUE 2746.021755 2841.505987 2383.075218 2610.500369 2942.460984 2718.704197 2615.059026 2717.22244 2184.436555 2210.966256 1.242000753 1.285187406 1.077843324 1.180705659 1.330848436 1.229645269 1.182767498 1.228975084 0.988000857 1 11.11046129 -8.762101114 24.99551233 0.994000306 1.218697277 0.668586565 0.063571621 10.64766371 402043.8565 0.053262617 0.016875274 1.73E-09 8.762101114 0.22469697 SQLDDHPES(ph)DDEENFIDANDDEDMEK ddPTM_K562_Paclitaxel_30min_R1 1 SQLDDHPESDDEENFIDANDDEDMEK 26 0 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 1 S(0.018)QLDDHPES(0.982)DDEENFIDANDDEDMEK 73.058 0.0015473 0 570.54 390.07 968.53 720.66 289.34 285.58 251.37 580.8 341.19 660.21 TRUE FALSE 578.5293203 432.6591617 724.0126229 674.4400932 328.7530066 336.2236033 299.0661453 531.4574148 373.962824 525.6588396 1.100579457 0.823079779 1.37734319 1.283037671 0.625411354 0.639623227 0.568935824 1.011031062 0.71141736 1 9.037982962 -6.76360055 24.99882064 0.744442312 1.139467391 0.489692438 0.192934915 50.76968275 587268.284 0.061185498 0.072802355 1.72E-07 6.76360055 0.395025079 SQLGAHHTT(ph)PVGDGAAGTR ddPTM_K562_Paclitaxel_30min_R1 1 SQLGAHHTTPVGDGAAGTR 19 0 E9PJ42;Q5BJD5-3;Q5BJD5-2;Q5BJD5 E9PJ42 TMEM41B Transmembrane protein 41B 1 S(0.001)QLGAHHT(0.098)T(0.902)PVGDGAAGTR 70.767 0.022124 19390000 1518.5 1543.9 1526.3 1600 1318.3 1276.9 1493.8 1684.9 1151.9 1905.4 TRUE FALSE 1539.763685 1712.468223 1140.966688 1497.383161 1497.874779 1503.340286 1777.240752 1541.757228 1262.545142 1517.078434 1.014953249 1.128793466 0.752081542 0.987017631 0.987341686 0.990944339 1.171489036 1.016267316 0.832221402 1 10.56707996 SQPAPPADPDGS(ph)PGGAARPIK ddPTM_K562_Paclitaxel_30min_R1 2 SQPAPPADPDGSPGGAARPIK 21 1 P12980 P12980 LYL1 Protein lyl-1 1 SQPAPPADPDGS(1)PGGAARPIK;SQPAPPADPDGS(1)PGGAARPIK 187.57 7.87E-23 51691600 2922.3 2222.7 4374.9 3139.2 2512.4 2333.6 2155.7 3143.7 2208.9 4105.1 TRUE FALSE 2963.221216 2465.381903 3270.402387 2937.865763 2854.631415 2747.431195 2564.732821 2876.623063 2421.074715 3268.478367 0.90660573 0.754290415 1.000588659 0.898848159 0.87338238 0.840584176 0.784687103 0.880110785 0.740734508 1 11.67440343 -7.165278553 3.641794318 0.837604766 0.887912629 0.040659932 0.084506627 0.719009666 17.73825053 0.028168641 0.027988325 6.83E-08 7.165278553 0.050307864 SQPAPPADPDGSPGGAARPIKMEQTALS(ph)PEVR ddPTM_K562_Paclitaxel_30min_R1 1 SQPAPPADPDGSPGGAARPIKMEQTALSPEVR 32 2 P12980 P12980 LYL1 Protein lyl-1 1 SQPAPPADPDGS(0.051)PGGAARPIKMEQT(0.197)ALS(0.751)PEVR 40.544 0.020741 15424000 1224.1 823.36 1548 1003.8 1029.2 934.07 689.66 1275.9 2006.5 1038.7 TRUE FALSE 1241.241177 913.2572292 1157.188255 939.4207608 1169.394464 1099.7142 820.5193847 1167.504331 2199.23329 827.0123698 1.500873774 1.104284848 1.399239355 1.135921052 1.413998759 1.32974335 0.992148866 1.411713263 2.659250781 1 9.691765098 -8.543701963 24.98043065 1.898244646 1.264845574 0.230971497 0.400370822 276.832497 332093.6776 0.242689807 0.091747354 2.86E-09 8.543701963 -0.633399072 SQPEPS(ph)PVLSQLSQR ddPTM_K562_Paclitaxel_30min_R1 1 SQPEPSPVLSQLSQR 15 0 A2A305;Q5T6F2 A2A305 UBAP2 Ubiquitin-associated protein 2 1 SQPEPS(0.984)PVLS(0.013)QLS(0.004)QR 116 0.0012978 23237000 1339.2 1314 1654.9 1230.1 927.22 1051 912.84 1396.6 1040.1 1325.4 TRUE FALSE 1357.952932 1457.466964 1237.100027 1151.206892 1053.523062 1237.380093 1086.046625 1277.950113 1140.006252 1055.282752 1.286814296 1.381115118 1.172292473 1.090898993 0.998332494 1.172557867 1.029152255 1.211002558 1.080285118 1 10.04341389 -5.931249464 3.752997795 1.091573315 1.332895102 0.674455654 0.068638368 0.123176127 3.46727756 0.017812165 0.040108289 1.17E-06 5.931249464 0.241321786 SQPERDWVLNEFR ddPTM_K562_Paclitaxel_30min_R1 1 SQPERDWVLNEFR 13 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2;A0A0U1RQJ0 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 129.76 0.0036161 18831000 1362.3 1570.7 1544.3 1378.4 1417.9 1048 1578.8 1874.5 1352.9 2081.3 FALSE TRUE 1381.376403 1742.194338 1154.422365 1289.995593 1611.041985 1233.848085 1878.369058 1715.249525 1482.85209 1657.129918 0.833595718 1.051332379 0.696639626 0.778451695 0.9721881 0.744569314 1.13350742 1.035072451 0.894831524 1 10.694471 -7.759781328 24.99993521 1.018775545 0.851315565 0.356011814 0.111670567 52.09206725 785457.9873 0.044466539 0.03261433 1.74E-08 7.759781328 -0.16745998 SQPPGEDS(ph)DT(ph)DVDDDSRPPGRPAEVHLER ddPTM_K562_Paclitaxel_30min_R1 1 SQPPGEDSDTDVDDDSRPPGRPAEVHLER 29 2 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 2 S(0.004)QPPGEDS(0.723)DT(0.723)DVDDDS(0.55)RPPGRPAEVHLER 69.435 0.00067526 28440000 459.29 441.04 598.45 497.08 445.92 606.93 646.41 643.63 555.1 865.26 TRUE FALSE 465.721477 489.1942387 447.363896 465.1995136 506.6618535 714.5605138 769.062923 588.9496141 608.4198353 688.919537 0.67601723 0.710089078 0.649370314 0.675259575 0.735444165 1.037219117 1.116331998 0.854888826 0.883150793 1 9.428191682 -7.161326339 4.650424303 0.977266873 0.68150358 0.807984131 0.070756045 0.107655381 3.835160602 0.026157978 0.026140805 6.90E-08 7.161326339 -0.295763294 SQPPGEDS(ph)DTDVDDDSRPPGRPAEVHLER ddPTM_K562_Paclitaxel_30min_R1 2 SQPPGEDSDTDVDDDSRPPGRPAEVHLER 29 2 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 S(0.104)QPPGEDS(0.876)DT(0.018)DVDDDS(0.002)RPPGRPAEVHLER;S(0.026)QPPGEDS(0.61)DT(0.113)DVDDDS(0.251)RPPGRPAEVHLER 66.05 0.00034001 483160000 891.57 774.76 1236.78 824.68 869.02 912.33 474.22 746.35 535.4 863.19 TRUE FALSE 904.0547307 859.3509169 924.5395927 771.7887159 987.3952366 1074.118916 564.2007694 682.9429089 586.8275622 687.2714042 1.315426082 1.250380725 1.345232156 1.122975161 1.436688957 1.562874447 0.820928626 0.993701913 0.853851271 1 9.424736123 -7.773447295 24.9998103 0.916595539 1.329818629 0.751195837 0.118855618 118.9421757 247628.6262 0.051156163 0.034788064 1.68E-08 7.773447295 0.413223091 SQQQPT(ph)PVTPK ddPTM_K562_Paclitaxel_30min_R1 2 SQQQPTPVTPK 11 0 O95251;O95251-4;O95251-2 O95251 KAT7 Histone acetyltransferase KAT7 1 S(0.001)QQQPT(0.873)PVT(0.127)PK;S(0.001)QQQPT(0.996)PVT(0.004)PK 174.21 0.0008244 83413000 8785.5 7517.7 15289.5 9218.1 6469.1 6144.2 6089.6 9312.1 8105.5 11183.5 TRUE FALSE 8908.524106 8338.507909 11429.47663 8626.892325 7350.300943 7233.787601 7245.06981 8520.978981 8884.069491 8904.296561 1.000474776 0.936458916 1.283591191 0.968846025 0.825478003 0.812392933 0.813659985 0.956951391 0.997728392 1 13.12028593 -6.518210676 24.83512622 0.890725455 1.070872564 0.343999465 0.106009821 201.1651832 1070244.824 0.03203546 0.042515716 3.03E-07 6.518210676 0.180147109 SQQQPTPVT(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 SQQQPTPVTPK 11 0 O95251;O95251-4;O95251-2 O95251 KAT7 Histone acetyltransferase KAT7 1 SQQQPT(0.007)PVT(0.993)PK 206.46 1.28E-08 20432000 3510.4 3098.7 6112 3892.9 2628.5 3053.9 2739.2 3707.8 2991.2 4859.5 TRUE FALSE 3559.556431 3437.026545 4568.950008 3643.226818 2986.546201 3595.466286 3258.9489 3392.799247 3278.518125 3869.131233 0.91998855 0.888319971 1.180872328 0.941613659 0.771890645 0.929269665 0.842294744 0.876889163 0.847352526 1 11.91779395 -6.526694152 24.99231861 0.871138539 0.99819571 0.254642735 0.091008374 139.0328148 910708.0656 0.026423085 0.034269485 2.97E-07 6.526694152 0.127057171 SQS(ph)DCGELGDFR ddPTM_K562_Paclitaxel_30min_R1 1 SQSDCGELGDFR 12 0 Q6JBY9;B7ZKW8;F6T4W9 Q6JBY9 RCSD1 CapZ-interacting protein 1 S(0.029)QS(0.971)DCGELGDFR 107.11 0.0069877 35059000 540.66 564.98 792.24 656.37 522.58 439.74 555.15 812.61 438.16 697.71 TRUE FALSE 548.2309081 626.666427 592.2292137 614.273366 593.7642434 517.7217147 660.4868144 743.5737083 480.2472258 555.516319 0.986885334 1.12807924 1.066087878 1.105770155 1.068851126 0.931964907 1.188960237 1.33852721 0.864506063 1 9.117685483 SQS(ph)ETSLLGR ddPTM_K562_Paclitaxel_30min_R1 1 SQSETSLLGR 10 0 Q96B18;A0A0C4DFP1 Q96B18 DACT3 Dapper homolog 3 1 SQS(0.984)ET(0.01)S(0.006)LLGR 105.66 0.0064926 12801000 1231.3 1188.4 1473.3 1233.5 1098.3 1217.3 1238.3 1303 1209.7 1803.8 TRUE FALSE 1248.541999 1318.153531 1101.347193 1154.388831 1247.907054 1433.171063 1473.260961 1192.302017 1325.89709 1436.18457 0.869346479 0.917816246 0.766856306 0.803788632 0.868904374 0.997901727 1.025815895 0.830187179 0.923208004 1 10.48802545 -7.083182796 5.67825632 0.948650589 0.839371075 0.438580911 0.062704061 0.249434695 13.16019372 0.02231677 0.022507264 8.26E-08 7.083182796 -0.109279514 SQS(ph)FSHQQPSR ddPTM_K562_Paclitaxel_30min_R1 1 SQSFSHQQPSR 11 0 B3KNS5;Q8WVR3-2;Q8WVR3-3;Q8WVR3 B3KNS5 C7orf43 Uncharacterized protein C7orf43 1 S(0.002)QS(0.993)FS(0.005)HQQPSR 121.42 0.0019074 7114400 1287.7 1335.5 1564 1594.1 1077.2 1070.6 1178.5 1464.2 1477.1 1485.2 TRUE FALSE 1305.731773 1481.314406 1169.148857 1491.861561 1223.932877 1260.455878 1402.114223 1339.807071 1618.982055 1182.515425 1.104198512 1.252680832 0.988696496 1.261600085 1.035024873 1.065910729 1.185704806 1.133014456 1.369100158 1 10.20764329 -7.804963028 24.74317082 1.18303953 1.121015271 0.045203483 0.116599089 392.5704721 223172.0445 0.046318173 0.031227937 1.57E-08 7.804963028 -0.06202426 SQS(ph)GTLDGESAAWSASGEDSR ddPTM_K562_Paclitaxel_30min_R1 2 SQSGTLDGESAAWSASGEDSR 21 0 P49815;A0A2R8Y5F1;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;X5D2U8;A0A2R8YGU4;A0A2R8Y6C9;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;P49815-4;H3BQK4 P49815 TSC2 Tuberin 1 S(0.068)QS(0.735)GT(0.196)LDGESAAWSASGEDSR;S(0.034)QS(0.95)GT(0.015)LDGESAAWSASGEDSR 154.72 1.34E-17 45273000 1373.31 1157.01 1493.98 1569.76 1278.15 1100.47 1158.92 1173.61 1047.39 1505.56 TRUE FALSE 1392.540577 1283.336265 1116.806272 1469.08262 1452.255669 1295.622903 1378.81902 1073.904505 1147.996489 1198.726046 1.161683758 1.070583449 0.931660971 1.225536581 1.21149922 1.080833196 1.150236975 0.895871504 0.957680442 1 10.22728627 -8.258385034 24.9897135 0.945081976 1.116008305 0.466783429 0.08200844 245.9067649 2011954.956 0.042825729 0.023338213 5.52E-09 8.258385034 0.17092633 SQS(ph)IEQESQEK ddPTM_K562_Paclitaxel_30min_R1 2 SQSIEQESQEK 11 0 Q5VTL8;A0A0A0MRN0 Q5VTL8 PRPF38B Pre-mRNA-splicing factor 38B 1 S(0.009)QS(0.991)IEQESQEK;S(0.026)QS(0.974)IEQESQEK 175.21 0.00036156 65307000 3594.6 3076.4 7223.3 4123.9 2889 2776.7 2311.21 4458.6 2582.6 5184.6 TRUE FALSE 3644.93549 3412.291756 5399.688578 3859.411512 3282.530711 3269.108758 2749.750032 4079.8141 2830.670269 4127.975674 0.882983762 0.826625936 1.308071802 0.934940469 0.795191389 0.791939928 0.666125542 0.988332883 0.685728428 1 12.01121875 -6.618483628 5.076754366 0.812609643 1.007828557 0.221755636 0.15608617 0.299213114 12.61363594 0.046434789 0.060497149 2.41E-07 6.618483628 0.195218913 SQS(ph)LPHSATVTLGGTSDPSTLSSSALSER ddPTM_K562_Paclitaxel_30min_R1 2 SQSLPHSATVTLGGTSDPSTLSSSALSER 29 0 F8WDP1;A0A0A0MRY0;Q8WUA7-3;Q8WUA7-4;Q8WUA7 F8WDP1 TBC1D22A TBC1 domain family member 22A 1 S(0.14)QS(0.514)LPHS(0.204)AT(0.14)VT(0.001)LGGTSDPSTLSSSALSER;S(0.108)QS(0.312)LPHS(0.285)AT(0.285)VT(0.008)LGGTSDPSTLSSSALSER 80.832 8.43E-06 39508000 2299.01 1984.55 2516.85 2469 1953.83 2022.96 1953.46 2633.5 1843.58 2820.5 TRUE FALSE 2331.203233 2201.22988 1881.440089 2310.649391 2219.974725 2381.703552 2324.118837 2409.767737 2020.664096 2245.680552 1.038083191 0.980206147 0.837803973 1.028930579 0.988553213 1.060570948 1.034928514 1.07306791 0.899800328 1 11.132937 SQS(ph)LPNSLDYTQTSDPGR ddPTM_K562_Paclitaxel_30min_R1 1 SQSLPNSLDYTQTSDPGR 18 0 H0YNE5;H0YLG5;Q96TC7 H0YNE5 RMDN3 Regulator of microtubule dynamics protein 3 1 S(0.001)QS(0.786)LPNS(0.206)LDYT(0.007)QTSDPGR 282.1 2.58E-134 207840000 1404.6 1256.8 1582.4 1547.9 1019.2 1142.3 1043.2 1356.7 954.24 1419.6 TRUE FALSE 1424.268734 1394.021674 1182.903549 1448.624622 1158.032295 1344.870866 1241.141754 1241.439867 1045.899016 1130.284741 1.260097285 1.233336719 1.046553586 1.281645739 1.024549172 1.189851387 1.098078837 1.098342587 0.92534118 1 10.14247055 -6.92481188 0.260838798 0.960217641 1.312142831 0.463841071 0.083823333 3.600838514 0.445321232 0.136061188 0.410820489 1.19E-07 6.92481188 0.35192519 SQS(ph)LPTTLLSPVR ddPTM_K562_Paclitaxel_30min_R1 1 SQSLPTTLLSPVR 13 0 E7EUL7;E9PHV5;P28290-2;P28290-3;P28290 E7EUL7 SSFA2 Sperm-specific antigen 2 1 S(0.007)QS(0.937)LPT(0.028)T(0.028)LLSPVR 158.89 0.00071462 11850000 826.14 707.25 1078 774.56 836.28 837.24 530.85 972.84 752.66 771.75 TRUE FALSE 837.7085089 784.4699468 805.8455675 724.8831884 950.1954943 985.7127586 631.5760163 890.1911697 824.956356 614.4669264 1.363309355 1.276667487 1.311454747 1.179694394 1.5463737 1.604175451 1.027843793 1.448721048 1.342556158 1 9.26319155 -10.88467911 6.974424581 0.999999994 1.344038795 0.297278186 0.158912364 1.42E-08 2.31E-09 0.154403505 0.03744835 1.30E-11 10.88467911 0.3440388 SQS(ph)MDIDGVSCEK ddPTM_K562_Paclitaxel_30min_R1 2 SQSMDIDGVSCEK 13 0 O95155;O95155-4;O95155-2 O95155 UBE4B Ubiquitin conjugation factor E4 B 1 S(0.001)QS(0.999)MDIDGVSCEK;S(0.006)QS(0.994)MDIDGVSCEK 146.16 5.94E-05 26383000 3787.9 2982.16 5752.7 3550.2 2860.87 2696.24 2090.72 3503.8 2720.71 4204.6 TRUE FALSE 3840.942287 3307.762314 4300.359737 3322.506062 3250.568929 3174.380307 2487.423206 3206.13032 2982.046352 3347.700212 1.147337588 0.988070049 1.284571337 0.992474192 0.970985669 0.948227173 0.743024479 0.957711299 0.89077461 1 11.70895462 -6.678110605 2.18502332 0.901448004 1.124983479 0.504842508 0.09585872 0.247364519 2.416410568 0.030930746 0.042135659 2.10E-07 6.678110605 0.223535475 SQS(ph)NPILGSPFFSHFDGQDSYAAAVR ddPTM_K562_Paclitaxel_30min_R1 1 SQSNPILGSPFFSHFDGQDSYAAAVR 26 0 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 S(0.139)QS(0.715)NPILGS(0.147)PFFSHFDGQDSYAAAVR 165.79 1.87E-26 60573000 1670.5 2050.3 2115.8 1722.8 1583.9 1637.7 2113 2398.6 1712.6 2913.3 TRUE FALSE 1693.892154 2274.158688 1581.640122 1612.307319 1799.653996 1928.123101 2513.930719 2194.823958 1877.102882 2319.567861 0.730261952 0.980423434 0.681868441 0.695089523 0.775857446 0.831242376 1.083792702 0.946221059 0.809246806 1 11.17964034 -7.554043441 11.73458305 0.95573516 0.777736412 0.440504404 0.099633479 0.770589882 287.0627265 0.0390468 0.030285211 2.79E-08 7.554043441 -0.177998748 SQS(ph)PAASDCSSSSSSASLPSSGR ddPTM_K562_Paclitaxel_30min_R1 3 SQSPAASDCSSSSSSASLPSSGR 23 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 S(0.012)QS(0.906)PAAS(0.082)DCSSSSSSASLPSSGR;S(0.085)QS(0.911)PAAS(0.003)DCSSSSSSASLPSSGR;S(0.032)QS(0.967)PAAS(0.001)DCSSSSSSASLPSSGR 227.43 7.14E-46 608590000 8521.3 7880.8 11058.7 8896 8099.7 6985.2 7599.4 8733.1 9618.4 9624.9 TRUE FALSE 8640.62449 8741.252395 8266.794413 8325.450377 9203.016269 8223.927143 9041.346478 7991.168645 10542.2903 7663.340097 1.127527212 1.140658288 1.0787456 1.086399699 1.200914504 1.07315179 1.179817986 1.042778807 1.37567825 1 12.90375762 SQS(ph)PHYFR ddPTM_K562_Paclitaxel_30min_R1 1 SQSPHYFR 8 0 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 S(0.214)QS(0.786)PHYFR 77.744 0.024797 64004000 1876.5 1463.9 2304.3 2085.3 1754.6 1381.4 1440.3 2160.7 1862.2 1868.8 TRUE FALSE 1902.776789 1623.733553 1722.550966 1951.558191 1993.606226 1626.371894 1713.589406 1977.135048 2041.072631 1487.937534 1.278801526 1.091264596 1.157676936 1.311586103 1.339845376 1.09303775 1.15165413 1.328775572 1.371746181 1 10.53909825 -11.61523205 3.064422439 0.984731571 1.230794264 0.332327407 0.100123241 41525870.59 42478923.86 5044774.07 0.02663673 2.43E-12 11.61523205 0.246062693 SQS(ph)PVHLR ddPTM_K562_Paclitaxel_30min_R1 2 SQSPVHLR 8 0 Q96T58;A0A669KB49 Q96T58 SPEN Msx2-interacting protein 1 S(0.003)QS(0.997)PVHLR;S(0.062)QS(0.938)PVHLR 94.767 0.011128 28827000 5029.8 4574 5712 5116.2 4459 4290.8 3610.3 4906 4096.4 5863.1 TRUE FALSE 5100.232718 5073.404788 4269.934955 4788.069831 5066.391291 5051.713134 4295.335578 4489.204678 4489.877523 4668.197002 1.092548733 1.086801775 0.91468611 1.025678614 1.085299376 1.082155087 0.920127316 0.961657076 0.96180121 1 12.18864973 -7.761563649 24.99999999 0.957701155 1.04427159 0.394917909 0.052563764 3.849562767 774118.6539 0.022589387 0.016328243 1.73E-08 7.761563649 0.086570436 SQS(ph)SDTEQQS(ph)PTSGGGK ddPTM_K562_Paclitaxel_30min_R1 1 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 S(0.25)QS(0.522)S(0.212)DT(0.02)EQQS(0.747)PT(0.185)S(0.065)GGGK 185.23 8.52E-10 28260000 3172 2819.7 6190.2 3937.4 2669.7 2474 2375.1 3678.5 3036.1 4365.1 TRUE FALSE 3216.417786 3127.564382 4627.407451 3684.872787 3033.358338 2912.729163 2825.762826 3365.988465 3327.730971 3475.490224 0.925457296 0.899891578 1.331440215 1.060245476 0.872785749 0.838077214 0.81305446 0.968493147 0.957485349 1 11.76300077 -6.755206962 24.34395241 0.898465625 1.063031163 0.253526489 0.121610022 148.2995332 579256.0142 0.038442997 0.048350645 1.76E-07 6.755206962 0.164565538 SQS(ph)SDTEQQSPTSGGGK ddPTM_K562_Paclitaxel_30min_R1 2 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 SQS(0.753)S(0.247)DTEQQSPTSGGGK;S(0.015)QS(0.784)S(0.197)DT(0.004)EQQSPTSGGGK 357.96 0 72752000 4716.3 3844.8 7798.6 4570.6 3410.6 3026.8 3116.7 4818 4224.8 5462.7 TRUE FALSE 4782.342751 4264.588266 5829.746978 4277.462173 3875.181462 3563.560482 3708.077555 4408.680827 4630.610917 4349.398741 1.099541117 0.980500644 1.340356984 0.983460572 0.890969463 0.819322553 0.852549461 1.01362995 1.064655414 1 12.08660026 -6.504651601 24.57715456 0.931059641 1.130459558 0.404725706 0.108247523 616.4998478 831277.3427 0.03185466 0.046233486 3.13E-07 6.504651601 0.199399916 SQS(ph)SERGNDQESSQPVGPVIVQQPTEEK ddPTM_K562_Paclitaxel_30min_R1 2 SQSSERGNDQESSQPVGPVIVQQPTEEK 28 1 Q5JUL1;Q96GU1-2;Q96GU1 Q5JUL1 PAGE5 P antigen family member 5 1 S(0.127)QS(0.434)S(0.434)ERGNDQES(0.002)S(0.002)QPVGPVIVQQPTEEK;S(0.039)QS(0.407)S(0.407)ERGNDQES(0.074)S(0.074)QPVGPVIVQQPTEEK 91.655 1.59E-06 242801000 1590.68 1549.56 3654.2 1938.87 1549.26 1427.78 1292.51 2502.47 1594.64 2644.56 TRUE FALSE 1612.954428 1718.746201 2731.652015 1814.519556 1760.295441 1680.976736 1537.757025 2289.869554 1747.812297 2105.59722 0.766031799 0.816274919 1.297328848 0.861760045 0.836007677 0.79833727 0.7303187 1.087515471 0.830079124 1 11.04001377 -2.00201782 24.99295832 0.902736238 0.000722123 0 0.166585819 0 0 0.038705009 0 0.009953646 2.00201782 -0.902014115 SQS(ph)VPASTGLGWGSGLVAPLQEGSIDSTLAGTQDTR ddPTM_K562_Paclitaxel_30min_R1 1 SQSVPASTGLGWGSGLVAPLQEGSIDSTLAGTQDTR 36 0 H0Y764;A0A494C1V1;Q6ZNJ1-2;Q6ZNJ1-3;Q6ZNJ1 H0Y764 NBEAL2 Neurobeachin-like protein 2 1 S(0.247)QS(0.734)VPAS(0.009)T(0.009)GLGWGSGLVAPLQEGSIDSTLAGTQDTR 89.34 4.69E-11 16632000 728.94 782.25 875.87 727.8 824.05 547.91 876.19 807.13 855.03 1295 TRUE FALSE 739.147409 867.6587004 654.7457859 681.1221655 936.2995613 645.0741455 1042.442478 738.5592686 937.1594519 1031.078289 0.716868367 0.84150613 0.635010739 0.660592093 0.908078049 0.625630616 1.011021655 0.716297954 0.908912021 1 10.00993816 -8.880074717 0.391140941 1.013479399 0.717918362 0.329763239 0.115985876 1.547548519 0.668378611 0.168863834 0.099542747 1.32E-09 8.880074717 -0.295561036 SQS(ph)WEER ddPTM_K562_Paclitaxel_30min_R1 1 SQSWEER 7 0 I1E4Y6;Q6Y7W6;Q6Y7W6-4;Q6Y7W6-5;E7ESB6;Q6Y7W6-3 I1E4Y6;Q6Y7W6-3 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 S(0.003)QS(0.997)WEER 102.06 0.0092289 48429000 1658.1 1582.1 1977.7 1217.7 1208.8 1305 1179 1498.9 979.61 2006.5 TRUE FALSE 1681.318516 1754.839028 1478.405175 1139.602172 1373.459025 1536.423427 1402.709095 1371.559089 1073.705918 1597.574199 1.052419673 1.098439766 0.925406267 0.71333286 0.859715327 0.961722735 0.87802438 0.858526064 0.672085164 1 10.64166722 -5.90269038 4.39199971 0.847500502 1.073277542 0.475125913 0.093803553 0.174888707 5.971709595 0.024992331 0.055493931 1.25E-06 5.90269038 0.225777041 SQSAAVT(ph)PSSTTSSTR ddPTM_K562_Paclitaxel_30min_R1 2 SQSAAVTPSSTTSSTR 16 0 A0A087WX59;Q16186 A0A087WX59 ADRM1 Proteasomal ubiquitin receptor ADRM1 1 S(0.038)QS(0.033)AAVT(0.461)PS(0.266)S(0.089)T(0.03)T(0.054)S(0.006)S(0.018)T(0.006)R;SQSAAVT(0.544)PS(0.053)S(0.36)T(0.035)T(0.006)S(0.002)STR 135.69 5.30E-07 15496400 5112.2 4364.9 6415.2 5302.9 4279.7 4427.2 3699.9 4929 4094.7 5510.1 TRUE FALSE 5183.786572 4841.474543 4795.603418 4962.795729 4862.667596 5212.301759 4401.93671 4510.250684 4488.014231 4387.138595 1.181587146 1.103560883 1.093105065 1.131214713 1.108391607 1.188086869 1.003373068 1.028062047 1.022993492 1 12.09906457 -7.776255806 24.99982516 1.015945618 1.129732324 0.791263724 0.030310271 112.9749446 190621.3171 0.012600455 0.008535311 1.67E-08 7.776255806 0.113786706 SQSAAVTPS(ph)STTSSTR ddPTM_K562_Paclitaxel_30min_R1 1 SQSAAVTPSSTTSSTR 16 0 A0A087WX59;Q16186 A0A087WX59 ADRM1 Proteasomal ubiquitin receptor ADRM1 1 SQSAAVT(0.276)PS(0.675)S(0.048)TTSSTR 208.59 2.95E-17 14389000 2749.9 2317.9 3216.4 3345.4 2252.6 2602.1 2054.8 2665.1 2642.7 3057.1 TRUE FALSE 2788.407084 2570.976161 2404.38004 3130.841017 2559.442257 3063.5459 2444.687573 2438.68312 2896.543143 2434.061342 1.145577984 1.056249535 0.987805853 1.286262167 1.051510992 1.258614911 1.004365638 1.001898793 1.190004168 1 11.24914981 -11.24942667 5.173675434 0.999986171 1.105693471 0.091798814 0.102473259 1.59E-05 2.31E-06 0.096642507 0.023436185 5.63E-12 11.24942667 0.1057073 SQSASVES(ph)IPEVLEECTSPADHSDSASVHDMDYVNPR ddPTM_K562_Paclitaxel_30min_R1 2 SQSASVESIPEVLEECTSPADHSDSASVHDMDYVNPR 37 0 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 S(0.014)QS(0.014)AS(0.034)VES(0.936)IPEVLEECT(0.001)SPADHSDSASVHDMDYVNPR;SQSAS(0.001)VES(0.997)IPEVLEECT(0.002)SPADHSDSASVHDMDYVNPR 92.887 6.72E-14 50870000 1131.89 1269.41 1373.79 1262.83 1122.74 1313.22 1077.47 1348.44 1461.67 1388.26 TRUE FALSE 1147.739952 1408.008477 1026.959724 1181.837736 1275.676196 1546.101128 1281.914308 1233.881605 1602.069934 1105.33185 1.038366851 1.273833263 0.929096292 1.069215309 1.154111497 1.398766469 1.159755152 1.116299693 1.449401765 1 10.11026385 -7.003693052 15.8375199 1.233422022 1.084857033 0.184817578 0.144912301 2.320095394 9953.265898 0.044307998 0.048496419 9.92E-08 7.003693052 -0.148564989 SQSDLDDQHDYDSVAS(ph)DEDTDQEPLR ddPTM_K562_Paclitaxel_30min_R1 2 SQSDLDDQHDYDSVASDEDTDQEPLR 26 0 J3QLH1;J3QRU8;A0A0C4DGN6;Q9Y2X7;Q9Y2X7-3 J3QLH1 GIT1 ARF GTPase-activating protein GIT1 1 SQSDLDDQHDYDSVAS(0.982)DEDT(0.018)DQEPLR;SQSDLDDQHDYDS(0.001)VAS(0.93)DEDT(0.07)DQEPLR 105.08 1.60E-06 212240000 4382.4 4114.1 6088.8 5411.6 4315.5 4416 3711.4 4944.7 3371.4 5041.9 TRUE FALSE 4443.767121 4563.291351 4551.607135 5064.524197 4903.344162 5199.115596 4415.618775 4524.616871 3695.238034 4014.358012 1.106968314 1.136742497 1.133831891 1.261602523 1.221451636 1.295130026 1.099956397 1.127108458 0.920505352 1 11.97095357 -8.539626888 2.131770237 0.961551905 1.187061956 0.623039706 0.065909444 0.220793684 1.83443061 0.059323992 0.019230269 2.89E-09 8.539626888 0.225510051 SQSGEDES(ph)MNQPGPIK ddPTM_K562_Paclitaxel_30min_R1 1 SQSGEDESMNQPGPIK 16 0 A0A0C4DG33;O43933-2;O43933 A0A0C4DG33 PEX1 Peroxisome biogenesis factor 1 1 S(0.002)QS(0.118)GEDES(0.88)MNQPGPIK 125.33 6.95E-05 17523000 2676.5 2178.8 4973.5 2906.8 2549.6 2148.5 1702.4 3010 2381.6 3849.1 TRUE FALSE 2713.979258 2416.688752 3717.878414 2720.370858 2896.898685 2529.506309 2025.421513 2754.281712 2610.363321 3064.651307 0.885575221 0.788568914 1.213148917 0.887660809 0.945262085 0.82538144 0.660897867 0.898725968 0.851765196 1 11.58150722 -7.259381902 21.28754436 0.829370936 0.947223727 0.115590931 0.128866084 45.08358066 466455.9981 0.043944162 0.041793282 5.50E-08 7.259381902 0.117852791 SQSLPNS(ph)LDYTQTSDPGR ddPTM_K562_Paclitaxel_30min_R1 2 SQSLPNSLDYTQTSDPGR 18 0 H0YNE5;H0YLG5;Q96TC7 H0YNE5 RMDN3 Regulator of microtubule dynamics protein 3 1 SQS(0.042)LPNS(0.957)LDYT(0.001)QTSDPGR;SQS(0.049)LPNS(0.95)LDYTQTSDPGR 225.39 9.62E-33 996890000 4609.2 3810.4 5729.2 4784.8 4215.1 4199.9 4203 4561 4157.8 5787.2 TRUE FALSE 4673.743021 4226.432358 4282.792602 4477.924344 4789.267982 4944.693295 5000.497309 4173.514581 4557.175268 4607.765463 1.014318775 0.917241208 0.929472786 0.97182124 1.039390572 1.073121741 1.085232603 0.905756731 0.989020666 1 12.16985157 -4.902283313 19.53841222 0.990280245 2.964942401 0.014871107 0.059079401 2763.506701 572983.168 0.015798787 8961.894981 1.25E-05 4.902283313 1.974662156 SQSLPNSLDYTQTS(ph)DPGR ddPTM_K562_Paclitaxel_30min_R1 1 SQSLPNSLDYTQTSDPGR 18 0 H0YNE5;H0YLG5;Q96TC7 H0YNE5 RMDN3 Regulator of microtubule dynamics protein 3 1 S(0.003)QS(0.068)LPNS(0.235)LDY(0.026)T(0.021)QT(0.001)S(0.645)DPGR 138.42 8.51E-11 210170000 1695.6 1684.1 2148.3 2220.4 1534.5 1448.9 1682.3 1584.9 1534.3 2078.7 TRUE FALSE 1719.343631 1867.975733 1605.935095 2077.993482 1743.524879 1705.842071 2001.507643 1450.252852 1681.67637 1655.059799 1.038840791 1.128645463 0.970318472 1.25553982 1.053451289 1.030683044 1.209326481 0.87625405 1.016081939 1 10.69266763 -8.269159855 24.99664523 0.959626003 1.096117469 0.330335795 0.087330487 676.8034606 2191276.784 0.044229557 0.02189172 5.38E-09 8.269159855 0.136491466 SQSLPT(ph)TLLSPVR ddPTM_K562_Paclitaxel_30min_R1 1 SQSLPTTLLSPVR 13 0 E7EUL7;E9PHV5;P28290-2;P28290-3;P28290 E7EUL7 SSFA2 Sperm-specific antigen 2 1 S(0.012)QS(0.046)LPT(0.746)T(0.195)LLSPVR 172.85 0.00019266 81893000 1590.3 1466.8 1913.9 1810.6 1152.2 1376 1216.3 1486.2 1361.3 1788.1 TRUE FALSE 1612.569106 1626.950184 1430.712274 1694.47622 1309.149147 1620.01428 1447.086575 1359.938033 1492.058947 1423.684238 1.132673287 1.142774599 1.004936513 1.190205085 0.919550215 1.137902799 1.01643787 0.955224478 1.048026597 1 10.47541349 -4.705658408 0.286266523 0.991967926 1.316303941 0.245177522 0.074868182 15.71315462 0.827967042 0.083845173 1.890112335 1.97E-05 4.705658408 0.324336015 SQSLPTT(ph)LLSPVR ddPTM_K562_Paclitaxel_30min_R1 1 SQSLPTTLLSPVR 13 0 E7EUL7;E9PHV5;P28290-2;P28290-3;P28290 E7EUL7 SSFA2 Sperm-specific antigen 2 1 S(0.004)QS(0.055)LPT(0.271)T(0.662)LLS(0.008)PVR 155.09 0.0017208 10217000 1064.1 1178.5 1308.1 1188.5 932.32 1005.9 997.56 838.3 1128.4 1284.7 TRUE FALSE 1079.000683 1307.172615 977.8539766 1112.27493 1059.317768 1184.282241 1186.841802 767.0811825 1236.787862 1022.877435 1.054868009 1.277936702 0.955983526 1.087398051 1.035625318 1.157794865 1.160297179 0.749924826 1.209126157 1 9.998417571 -5.937112365 0.229794346 0.990333972 1.2124615 0.041974507 0.138595878 25.24585619 1.558612863 0.24914038 1.59855773 1.16E-06 5.937112365 0.222127528 SQSNPILGS(ph)PFFSHFDGQDSYAAAVR ddPTM_K562_Paclitaxel_30min_R1 1 SQSNPILGSPFFSHFDGQDSYAAAVR 26 0 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 S(0.004)QS(0.014)NPILGS(0.981)PFFSHFDGQDSYAAAVR 136.34 7.60E-15 52485000 1568.3 1218 1724.6 1269.8 1381.7 1221.1 1723.5 1819.8 1303.1 2401.9 TRUE FALSE 1590.261039 1350.985359 1289.2034 1188.360711 1569.910932 1437.64494 2050.525128 1665.196631 1428.268577 1912.391462 0.831556232 0.706437665 0.67413154 0.621400344 0.82091505 0.751752436 1.072230853 0.870740465 0.746849485 1 10.90116215 -7.578771579 14.45906171 0.911787184 0.726895073 0.467441153 0.09825393 1.703613265 439.2938376 0.038371031 0.029720335 2.64E-08 7.578771579 -0.184892111 SQSPAAS(ph)DCSSSSSSASLPSSGR ddPTM_K562_Paclitaxel_30min_R1 1 SQSPAASDCSSSSSSASLPSSGR 23 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 S(0.007)QS(0.42)PAAS(0.573)DCSSSSSSASLPSSGR 185.92 1.27E-23 209950000 2561.8 2636.1 3498.1 3487.4 2487.1 2421 2316.4 2926.9 2971.6 2685.6 TRUE FALSE 2597.673104 2923.918313 2614.961391 3263.733773 2825.885127 2850.330357 2755.924808 2678.241576 3257.035457 2138.273246 1.214846189 1.367420332 1.222931352 1.526340836 1.321573439 1.333005668 1.288855301 1.252525411 1.523208254 1 11.06223051 -7.753815905 5.333764576 1.286825375 1.336491474 0.038716048 0.142911962 0.858298731 72.74641892 0.055632012 0.040122962 1.76E-08 7.753815905 0.049666099 SQSPAASDCSSSSSSASLPSSGRSSLGS(ph)HQLPR ddPTM_K562_Paclitaxel_30min_R1 1 SQSPAASDCSSSSSSASLPSSGRSSLGSHQLPR 33 1 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 SQSPAASDCSSSSSSAS(0.004)LPS(0.016)S(0.016)GRS(0.193)S(0.193)LGS(0.577)HQLPR 93.384 2.25E-10 7710400 955.37 962.65 1419.5 981.06 925.88 816.92 896.89 1132.9 1025.8 1110.1 TRUE FALSE 968.7481276 1067.755382 1061.129669 918.1392027 1052.000531 961.7892919 1067.070195 1036.653074 1124.332673 883.8610107 1.096041251 1.20805802 1.20056169 1.038782333 1.190232988 1.088168027 1.2072828 1.17286888 1.272069545 1 9.78767571 -7.787396935 24.99945813 1.177461022 1.141053037 0.010364921 0.081905691 859.8341337 828089.5396 0.032626681 0.022007029 1.63E-08 7.787396935 -0.036407985 SQSS(ph)DTEQQS(ph)PTSGGGK ddPTM_K562_Paclitaxel_30min_R1 4 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 S(0.002)QS(0.289)S(0.708)DT(0.001)EQQS(0.813)PT(0.172)S(0.016)GGGK;SQS(0.008)S(0.964)DT(0.027)EQQS(0.954)PT(0.043)S(0.003)GGGK;SQS(0.056)S(0.942)DT(0.001)EQQS(0.972)PT(0.025)S(0.002)GGGK;S(0.002)QS(0.163)S(0.831)DT(0.004)EQQS(0.985)PT(0.013)S(0.003)GGGK 238.72 1.77E-52 123339000 19943.95 15669.8 33975 21149.47 15955.91 14535.22 13255.13 20629.3 17220.49 23215.6 TRUE FALSE 20223.22683 17380.68176 25397.59105 19793.03766 18129.37508 17112.83718 15770.22172 18876.7122 18874.59501 18484.24798 1.094078962 0.940296937 1.374012677 1.070805676 0.980801334 0.925806514 0.853170859 1.021232361 1.021117821 1 14.17400873 -6.691783447 4.025621497 0.959420263 1.130753383 0.326539416 0.109404451 0.263174743 8.361988061 0.034269384 0.044056881 2.03E-07 6.691783447 0.17133312 SQSS(ph)DTEQQSPTSGGGK ddPTM_K562_Paclitaxel_30min_R1 3 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 SQS(0.007)S(0.992)DT(0.001)EQQSPTSGGGK;S(0.026)QS(0.084)S(0.76)DT(0.13)EQQSPTSGGGK;S(0.002)QS(0.007)S(0.991)DTEQQSPTSGGGK 286.85 1.01E-153 135920000 9520.1 9522.4 18793.2 12753.8 9717.6 8921.7 7406 11286.7 11041.7 13656.7 TRUE FALSE 9653.410772 10562.08783 14048.62423 11935.82835 11041.30164 10503.83823 8811.249838 10327.82439 12102.30462 10873.45704 0.887795917 0.971364286 1.292010827 1.097703178 1.015436176 0.96600724 0.810344843 0.949819762 1.113013513 1 13.40852307 -7.054359404 3.393784566 0.955658431 1.071278616 0.116209718 0.118843009 0.498402825 11.45894646 0.043526637 0.045486425 8.82E-08 7.054359404 0.115620185 SQSS(ph)ERGNDQESSQPVGPVIVQQPTEEKR ddPTM_K562_Paclitaxel_30min_R1 2 SQSSERGNDQESSQPVGPVIVQQPTEEKR 29 2 Q5JUL1;Q96GU1-2;Q96GU1 Q5JUL1 PAGE5 P antigen family member 5 1 S(0.145)QS(0.242)S(0.609)ERGNDQES(0.003)S(0.001)QPVGPVIVQQPTEEKR;S(0.122)QS(0.227)S(0.65)ERGNDQESSQPVGPVIVQQPTEEKR 122.44 6.83E-15 133478000 2310 2338 5016.1 3228.4 2494.2 2335.01 1999.28 3625.9 2759.02 4278.8 TRUE FALSE 2342.347127 2593.270747 3749.723517 3021.344874 2833.952267 2749.091238 2378.632943 3317.857163 3024.036199 3406.778211 0.687554922 0.76120915 1.10066558 0.886862803 0.83185699 0.806947523 0.698205987 0.973898786 0.887652794 1 11.73419231 SQSS(ph)HSYDDSTLPLIDR ddPTM_K562_Paclitaxel_30min_R1 1 SQSSHSYDDSTLPLIDR 17 0 O60716;O60716-21;O60716-2;O60716-10;O60716-9;O60716-17;O60716-5;O60716-3;A0A669KB05;O60716-11;C9JZR2;O60716-18;O60716-19;O60716-13;O60716-23;O60716-14;O60716-12;O60716-7;O60716-4;O60716-22;O60716-6;O60716-8;A0A669KB62;O60716-16;O60716-15;O60716-24;O60716-20;O60716-25;O60716-27;O60716-29;O60716-26;O60716-32;O60716-30;O60716-31;O60716-28;H0YC95 O60716 CTNND1 Catenin delta-1 1 SQS(0.022)S(0.628)HS(0.35)YDDSTLPLIDR 170.06 3.20E-53 0 399.17 530.82 640.15 500.04 448 570.64 694.63 432.99 544.76 610.46 TRUE FALSE 404.7596115 588.7767227 478.5362152 467.9696725 509.0251847 671.8349918 826.4324163 396.2047969 597.0866321 486.0479169 0.832756602 1.211355305 0.984545347 0.962805633 1.047273668 1.382240245 1.700310582 0.815155838 1.228452198 1 8.924954738 -7.114721582 6.76704752 1.242687536 1.011403414 0.177525272 0.233640108 0.456562505 24.06453153 0.079047932 0.079238984 7.68E-08 7.114721582 -0.231284122 SQSSDTEQQS(ph)PTSGGGK ddPTM_K562_Paclitaxel_30min_R1 4 SQSSDTEQQSPTSGGGK 17 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 SQS(0.001)S(0.005)DT(0.042)EQQS(0.889)PT(0.064)SGGGK;SQSSDTEQQS(0.995)PT(0.004)SGGGK;SQSSDT(0.003)EQQS(0.989)PT(0.007)S(0.002)GGGK;SQSSDT(0.002)EQQS(0.851)PT(0.073)S(0.073)GGGK 266.99 5.55E-95 321398000 10118.3 9490.4 17813.5 11993.5 8634.44 7794.34 8139.15 11505.5 9176.9 13770.2 TRUE FALSE 10259.98742 10526.59397 13316.26161 11224.29059 9810.59691 9176.556761 9683.511223 10528.03596 10058.38225 10963.82568 0.935803589 0.960120516 1.21456342 1.023756754 0.894815112 0.83698492 0.883223749 0.960252038 0.917415375 1 13.42046367 -6.719444098 6.123702278 0.907867643 1.042611717 0.336193649 0.080684367 0.212827786 19.8663519 0.025361945 0.032329809 1.91E-07 6.719444098 0.134744074 SQSSHS(ph)YDDSTLPLIDR ddPTM_K562_Paclitaxel_30min_R1 1 SQSSHSYDDSTLPLIDR 17 0 O60716;O60716-21;O60716-2;O60716-10;O60716-9;O60716-17;O60716-5;O60716-3;A0A669KB05;O60716-11;C9JZR2;O60716-18;O60716-19;O60716-13;O60716-23;O60716-14;O60716-12;O60716-7;O60716-4;O60716-22;O60716-6;O60716-8;A0A669KB62;O60716-16;O60716-15;O60716-24;O60716-20;O60716-25;O60716-27;O60716-29;O60716-26;O60716-32;O60716-30;O60716-31;O60716-28;H0YC95 O60716 CTNND1 Catenin delta-1 1 SQS(0.001)S(0.003)HS(0.996)YDDS(0.001)TLPLIDR 226.44 3.92E-31 16173000 510.63 571.71 561.83 659.78 544.09 675.16 590.23 554.86 454 676.25 TRUE FALSE 517.7803954 634.1312312 419.9890679 617.4646639 618.2042695 794.8901463 702.2230613 507.7211797 497.6087285 538.4298788 0.961648705 1.177741534 0.78002556 1.146787517 1.148161151 1.476311359 1.304205225 0.942966205 0.924184835 1 9.072614661 -6.47107834 24.99001139 1.154814721 0.988566727 0.135319986 0.181041576 716.8574706 345831.9785 0.054965458 0.081525872 3.38E-07 6.47107834 -0.166247994 SQSSS(ph)NCSNPISVPLRR ddPTM_K562_Paclitaxel_30min_R1 1 SQSSSNCSNPISVPLRR 17 1 P35568 P35568 IRS1 Insulin receptor substrate 1 1 S(0.026)QS(0.065)S(0.212)S(0.697)NCSNPISVPLRR 85.28 0.020721 43254000 1201.3 1358.7 1367.5 1550.3 1333.8 1199.6 1101.2 1561.5 822.81 1662.5 TRUE FALSE 1218.121906 1507.047461 1022.257712 1450.870697 1515.486141 1412.332217 1310.146951 1428.840828 901.8445769 1323.681587 0.920252966 1.138527177 0.772283698 1.09608739 1.144902336 1.066972775 0.989775006 1.079444514 0.681315345 1 10.37034041 -8.7386619 24.99997034 0.840657392 1.027776219 0.251086572 0.128030669 266.5546871 292565.2564 0.083067819 0.031350157 1.83E-09 8.7386619 0.187118827 SQT(ph)PPGVATPPIPK ddPTM_K562_Paclitaxel_30min_R1 2 SQTPPGVATPPIPK 14 0 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 S(0.001)QT(0.999)PPGVATPPIPK;S(0.001)QT(0.978)PPGVAT(0.021)PPIPK 148.52 9.52E-05 92012000 11364.4 8276.4 19115.9 11119.3 9120.7 7508.2 7551.2 11913 10171.4 13435.7 TRUE FALSE 11523.53666 9180.045341 14289.85462 10406.15787 10363.09375 8839.67385 8984.00078 10900.91629 11148.40842 10697.49696 1.077218035 0.858148908 1.335812917 0.972765676 0.968740051 0.826331045 0.8398227 1.0190156 1.042151118 1 13.38498565 -4.925402032 18.74651356 0.984888737 3.388284274 0.038827535 0.138012747 724.3102757 195865.9119 0.03459424 5496.213456 1.19E-05 4.925402032 2.403395537 SQT(ph)TSLENGVFPR ddPTM_K562_Paclitaxel_30min_R1 1 SQTTSLENGVFPR 13 0 A0A087WX11;J3KNG8;Q8TF40-3;Q8TF40;Q8TF40-2 A0A087WX11 FNIP1 Folliculin-interacting protein 1 1 S(0.001)QT(0.462)T(0.462)S(0.074)LENGVFPR 96.707 0.025282 12692000 1407.7 1206.7 1433.8 1643.2 1050.8 969.23 1262 1591.2 995.73 2064.3 TRUE FALSE 1427.412143 1338.451587 1071.819457 1537.812507 1193.93675 1141.109332 1501.457912 1456.017628 1091.374316 1643.594527 0.868469759 0.814344149 0.652119145 0.935639832 0.726418062 0.694276668 0.913520876 0.885873982 0.664016762 1 10.68263872 -11.24996163 4.489844082 1.000087233 0.796653836 0.273761665 0.100151255 8.56E-05 1.43E-05 0.094949553 0.023018794 5.62E-12 11.24996163 -0.203433397 SQTT(ph)SLENGVFPR ddPTM_K562_Paclitaxel_30min_R1 1 SQTTSLENGVFPR 13 0 A0A087WX11;J3KNG8;Q8TF40-3;Q8TF40;Q8TF40-2 A0A087WX11 FNIP1 Folliculin-interacting protein 1 1 SQT(0.01)T(0.675)S(0.315)LENGVFPR 111.66 7.69E-05 0 1159.2 1117.7 1462.5 1245.2 1141.9 1161.5 1088.7 1531.8 1016.7 1555.1 TRUE FALSE 1175.432376 1239.734266 1093.273787 1165.338445 1297.446113 1367.475717 1295.275142 1401.664029 1114.358578 1238.169766 0.949330543 1.001263558 0.882975676 0.941178243 1.047874167 1.104433135 1.046120796 1.13204511 0.900004675 1 10.27399342 -6.762509562 23.95053511 1.048701651 0.943463078 0.334498375 0.064483631 17.49242715 391487.6353 0.019042318 0.0228479 1.73E-07 6.762509562 -0.105238573 SQTTT(ph)ERDSDT(ph)DVEEEELPVENR ddPTM_K562_Paclitaxel_30min_R1 1 SQTTTERDSDTDVEEEELPVENR 23 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 2 S(0.051)QT(0.063)T(0.155)T(0.726)ERDS(0.007)DT(0.998)DVEEEELPVENR 94.57 0.0012344 140660000 1999.8 1981.7 2211.6 1976.3 1647 1718.8 1798.9 1997.9 1911.5 2476.5 TRUE FALSE 2027.80337 2198.068708 1653.254227 1849.548964 1871.349284 2023.605047 2140.231884 1828.165924 2095.108116 1971.787941 1.028408445 1.11475918 0.838454376 0.938006023 0.949062141 1.026279249 1.085427008 0.92716153 1.062542311 1 10.94528869 -7.274806758 23.46425477 1.019801182 0.972071671 0.084881679 0.07630646 1017.315777 1785723.092 0.028135056 0.02497966 5.31E-08 7.274806758 -0.047729511 SQTTTERDS(ph)DTDVEEEELPVENR ddPTM_K562_Paclitaxel_30min_R1 2 SQTTTERDSDTDVEEEELPVENR 23 1 Q14676;Q14676-3;Q14676-2;Q14676-4 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 S(0.026)QT(0.026)T(0.096)T(0.096)ERDS(0.756)DTDVEEEELPVENR;S(0.045)QT(0.148)T(0.108)T(0.148)ERDS(0.496)DT(0.055)DVEEEELPVENR 148.66 7.66E-19 415660000 2769.58 2644.24 4576.3 4028.8 3237.7 3187.1 2077.8 3002.3 2216.35 2482.92 TRUE FALSE 2808.362665 2932.947065 3420.956466 3770.4108 3678.729555 3752.287436 2472.051703 2747.235875 2429.24032 1976.899541 1.420589467 1.483609564 1.730465507 1.907234395 1.860858116 1.898066825 1.250469056 1.389668933 1.228813235 1 10.94902385 -7.775200122 24.83385395 1.249710003 1.72202904 0.653882663 0.177405074 160.2620362 289220.1167 0.081611576 0.055350358 1.68E-08 7.775200122 0.472319037 SQTVPS(ph)PTINNSGQYSR ddPTM_K562_Paclitaxel_30min_R1 1 SQTVPSPTINNSGQYSR 17 0 Q9P2D1;Q9P2D1-4;Q9P2D1-2;Q9P2D1-3 Q9P2D1 CHD7 Chromodomain-helicase-DNA-binding protein 7 1 SQTVPS(0.975)PT(0.024)INNS(0.001)GQYSR 126.32 2.91E-05 11983000 1646.2 1926.7 2121.7 1926.6 1606.4 1708.9 1692.3 1737.7 1298 2134.7 TRUE FALSE 1669.251879 2137.063622 1586.050594 1803.036499 1825.218877 2011.949421 2013.405091 1590.071539 1422.6787 1699.646968 0.982116822 1.257357358 0.933164724 1.060830003 1.073881171 1.183745483 1.184601937 0.935530477 0.837043649 1 10.7310194 -8.3751998 6.276354922 0.909246055 1.097189201 0.39208393 0.098202196 0.234302824 11.33084812 0.054075558 0.025474432 4.22E-09 8.3751998 0.187943146 SQTVPSPT(ph)INNSGQYSR ddPTM_K562_Paclitaxel_30min_R1 1 SQTVPSPTINNSGQYSR 17 0 Q9P2D1;Q9P2D1-4;Q9P2D1-2;Q9P2D1-3 Q9P2D1 CHD7 Chromodomain-helicase-DNA-binding protein 7 1 SQTVPS(0.194)PT(0.804)INNS(0.003)GQYSR 139.49 8.25E-15 0 1499.2 1275.8 1556.6 1433.7 1382.3 1336.8 1329.2 1308.9 1257.3 1504 TRUE FALSE 1520.193425 1415.096158 1163.617078 1341.748899 1570.592663 1573.86271 1581.408761 1197.700775 1378.069283 1197.483974 1.269489578 1.181724506 0.971718289 1.120473366 1.311577187 1.314307952 1.32060954 1.000181047 1.150803946 1 10.22579063 -8.275642399 24.79472806 1.05661937 1.206519333 0.318082202 0.108650531 1103.973372 1927234.367 0.066011518 0.031948103 5.30E-09 8.275642399 0.149899962 SRDAT(ph)PPVS(ph)PINMEDQER ddPTM_K562_Paclitaxel_30min_R1 1 SRDATPPVSPINMEDQER 18 1 P17275 P17275 JUNB Transcription factor jun-B 2 S(0.006)RDAT(0.994)PPVS(0.999)PINMEDQER 108.14 0.0068217 13269000 1455.5 1251.1 1731.6 1459.4 1500 1272.7 1338.2 1671.2 1466.9 1688.5 TRUE FALSE 1475.881491 1387.699329 1294.436164 1365.800616 1704.325395 1498.395475 1592.116464 1529.221129 1607.802299 1344.382773 1.09781345 1.032220404 0.962847925 1.015931358 1.267738199 1.114560158 1.184273182 1.137489381 1.195940867 1 10.39272825 -6.725457577 24.99868657 1.156816439 1.022964692 0.414184981 0.071197102 154.3613128 107243.3219 0.019925294 0.025722516 1.88E-07 6.725457577 -0.133851747 SRDAT(ph)PPVSPINMEDQER ddPTM_K562_Paclitaxel_30min_R1 1 SRDATPPVSPINMEDQER 18 1 P17275 P17275 JUNB Transcription factor jun-B 1 S(0.097)RDAT(0.903)PPVSPINMEDQER 107.88 0.0044124 17169000 67.649 73.472 148.07 213.34 99.377 0 163.42 227.69 165.86 59.751 TRUE FALSE 68.59629472 81.49392143 110.6878972 199.6573273 112.9138299 0 194.4280919 208.3463133 181.7915941 47.5737134 1.4418949 1.713003161 2.326660865 4.196799304 2.373449996 0 4.086880716 4.379441889 3.821261387 1 5.572092735 SRDDLYDQDDSRDFPR ddPTM_K562_Paclitaxel_30min_R1 2 SRDDLYDQDDSRDFPR 16 2 S4R3V8;Q86X29-6;Q86X29-5;Q86X29-2;Q86X29-3;Q86X29-4;Q86X29 S4R3V8 LSR Lipolysis-stimulated lipoprotein receptor 0 ; 82.515 0.011119 83155000 2418.47 2177 2975.2 2646.6 2648 2698.7 2462.6 3268.2 2974 3160.1 FALSE TRUE 2452.336042 2414.692222 2224.073963 2476.858922 3008.702431 3177.276553 2929.865494 2990.546011 3259.665988 2516.069885 0.974669287 0.95970793 0.883947611 0.984415789 1.19579446 1.262793443 1.164461095 1.188578278 1.295538732 1 11.29695628 -6.716930423 4.394034146 1.197935335 0.941144684 0.689484386 0.076917459 0.106740216 4.410706829 0.022239635 0.028218034 1.92E-07 6.716930423 -0.256790652 SRDES(ph)ASETSTPSEHSAAPSPQVEVR ddPTM_K562_Paclitaxel_30min_R1 1 SRDESASETSTPSEHSAAPSPQVEVR 26 1 A0A0D9SFK2;Q92614-3;Q92614-4;Q92614 A0A0D9SFK2 MYO18A Unconventional myosin-XVIIIa 1 S(0.092)RDES(0.321)AS(0.321)ET(0.125)S(0.125)T(0.015)PSEHSAAPSPQVEVR 77.876 0.00011534 14204000 199.35 224.08 410.2 206.16 229.46 183.75 173.91 183.52 187.29 471.28 TRUE FALSE 202.141515 248.5458122 306.6399367 192.9378203 260.7163368 216.3354825 206.9085146 167.9288305 205.2800413 375.2328773 0.538709498 0.662377492 0.817199012 0.514181544 0.694812082 0.576536587 0.551413608 0.447532294 0.547073707 1 8.55164243 -11.06378039 4.918205947 1.000006832 0.59745765 0.596853616 0.099969441 25890998.69 58243252.48 1677.716526 0.02562829 8.63E-12 11.06378039 -0.402549182 SRDESASETSTPSEHSAAPS(ph)PQVEVR ddPTM_K562_Paclitaxel_30min_R1 3 SRDESASETSTPSEHSAAPSPQVEVR 26 1 A0A0D9SFK2;Q92614-3;Q92614-4;Q92614 A0A0D9SFK2 MYO18A Unconventional myosin-XVIIIa 1 SRDESASETSTPSEHS(0.006)AAPS(0.994)PQVEVR;SRDESASETSTPSEHS(0.001)AAPS(0.999)PQVEVR;SRDESASETSTPSEHSAAPS(1)PQVEVR 189.63 7.20E-33 89096500 2123.95 2204.67 2963.9 2118.96 2085.14 2230.6 2247.39 2535.63 1921.62 2945.2 TRUE FALSE 2153.691853 2445.383326 2215.626788 1983.05939 2369.17137 2626.165591 2673.82052 2320.212405 2106.200187 2344.966623 0.918431773 1.042822231 0.944843635 0.84566636 1.010322 1.119915979 1.140238199 0.98944368 0.898179175 1 11.19535167 -6.985373367 24.96182848 1.039069508 0.943684121 0.233459051 0.077900811 363.3210608 620041.0816 0.026108464 0.02959308 1.03E-07 6.985373367 -0.095385387 SREDEDALEQARR ddPTM_K562_Paclitaxel_30min_R1 1 SREDEDALEQARR 13 2 O60885 O60885 BRD4 Bromodomain-containing protein 4 0 80.014 0.01905 2369300 575.72 699.93 679.14 542.71 343.79 608.46 501.43 719.28 501.79 785.59 FALSE TRUE 583.7818562 776.3507244 507.6827075 507.9030097 390.6200184 716.3618378 596.5737249 658.1726744 549.9891716 625.4863268 0.933324729 1.241195357 0.81166076 0.81201297 0.624506087 1.145287766 0.953775805 1.052257493 0.879298472 1 9.288834537 -9.630204489 17.00887254 1.000000004 0.941195722 0.011529354 0.167868805 0 0 0.168218677 0.040799022 2.34E-10 9.630204489 -0.058804282 SREDS(ph)PELNPPPGIEDNR ddPTM_K562_Paclitaxel_30min_R1 2 SREDSPELNPPPGIEDNR 18 1 Q03164-2;Q03164;Q03164-3 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 SREDS(1)PELNPPPGIEDNR;S(0.002)REDS(0.998)PELNPPPGIEDNR 145.48 8.44E-10 22826000 2694.4 2253.21 3709.5 2524.11 2572.23 2257.88 2373.97 3118.8 1988.46 3151.6 TRUE FALSE 2732.129913 2499.223088 2772.990846 2362.224882 2922.611274 2658.283316 2824.418415 2853.838473 2179.460468 2509.30219 1.088800673 0.995983305 1.105084456 0.941387168 1.164710765 1.059371536 1.125579225 1.137303623 0.868552411 1 11.29307051 -8.760620691 24.99967924 0.934276201 1.074892625 0.402181809 0.069690106 20.67749112 631585.2639 0.052169475 0.017061135 1.74E-09 8.760620691 0.140616424 SREQSRSASALSIS(ph)GGEEK ddPTM_K562_Paclitaxel_30min_R1 1 SREQSRSASALSISGGEEK 19 2 H0Y3P5;H7BZD5;H0Y786;A0A087X1N7;P20929-4;P20929;P20929-3;P20929-2 H0Y3P5 NEB Nebulin 1 SREQSRSAS(0.013)ALS(0.088)IS(0.898)GGEEK 49.606 0.02621 7968300 2079.5 1627.5 3817.5 2136.3 1906.3 1288.5 1298.3 2007.4 2044.1 2202.2 TRUE FALSE 2108.619416 1805.195954 2853.724911 1999.28728 2165.970334 1516.997384 1544.645647 1836.85884 2240.444938 1753.390431 1.202595485 1.029545914 1.627546757 1.140240784 1.235304069 0.865179458 0.880947917 1.047604006 1.277778696 1 10.77593156 -7.16343209 7.582308577 1.00929754 1.251721905 0.299519336 0.177895625 0.373683185 25.57920904 0.060435477 0.060479753 6.86E-08 7.16343209 0.242424365 SREQSSEAAETGVS(ph)ENEENPVR ddPTM_K562_Paclitaxel_30min_R1 1 SREQSSEAAETGVSENEENPVR 22 1 Q29RF7 Q29RF7 PDS5A Sister chromatid cohesion protein PDS5 homolog A 1 SREQSSEAAET(0.042)GVS(0.958)ENEENPVR 129.32 1.89E-08 14805000 773.6 838.04 1238.3 837.45 889.33 871.43 1022 885.43 958.99 1070 TRUE FALSE 784.4327868 929.5400413 925.6758499 783.7397053 1010.471802 1025.965875 1215.919165 810.2071948 1051.105274 851.9334127 0.920767721 1.091094712 1.086558921 0.919954181 1.186092466 1.204279419 1.427246715 0.951021738 1.233788062 1 9.734596863 -6.78318337 24.87697982 1.179491714 1.016627165 0.257475155 0.133557113 311.6629228 356567.0704 0.040847663 0.046357816 1.65E-07 6.78318337 -0.162864549 SRGS(ph)TNLFSK ddPTM_K562_Paclitaxel_30min_R1 1 SRGSTNLFSK 10 1 J3KNR0;P27448-8;P27448-3;P27448-4;P27448-2;P27448;H0YIY6;P27448-6;P27448-7;A2SY06 J3KNR0 MARK3 MAP/microtubule affinity-regulating kinase 3 1 S(0.002)RGS(0.776)T(0.223)NLFSK 86.699 0.016438 11088000 3474.1 2545.6 4219.4 3043.9 2012.9 1887 1880.7 2414.8 2746.6 3631.5 TRUE FALSE 3522.748119 2823.537217 3154.160285 2848.677878 2287.091059 2221.632955 2237.553007 2209.647667 3010.423202 2891.398307 1.218354493 0.97653001 1.09087713 0.985224994 0.79099827 0.768359361 0.773865365 0.764214208 1.041165167 1 11.49755165 -6.563152895 3.566804686 0.836595358 1.080426588 0.494177025 0.107299634 0.186123354 4.961063927 0.031993234 0.044048745 2.73E-07 6.563152895 0.24383123 SRIPSPLQPEMQGT(ph)PDDEPSEPEPSPSTLIYR ddPTM_K562_Paclitaxel_30min_R1 2 SRIPSPLQPEMQGTPDDEPSEPEPSPSTLIYR 32 1 K7EMY4;Q96GY3 K7EMY4 LIN37 Protein lin-37 homolog 1 S(0.003)RIPS(0.025)PLQPEMQGT(0.968)PDDEPS(0.004)EPEPSPSTLIYR;SRIPS(0.003)PLQPEMQGT(0.997)PDDEPSEPEPSPSTLIYR 111.31 9.99E-14 44417200 1388.06 1252.13 1428.83 1660.29 1321.42 1163.26 1119.29 1686.51 1503.82 1565.45 TRUE FALSE 1407.497123 1388.841788 1068.104195 1553.806431 1501.419776 1369.547828 1331.669434 1543.230449 1648.26863 1246.410431 1.129240488 1.114273239 0.856944204 1.246625022 1.204595002 1.098793619 1.068403635 1.23813987 1.322412417 1 10.2835635 -6.30436576 24.99985223 1.172785027 1.04156411 0.230705696 0.112430886 701.8855367 408768.7969 0.032141416 0.047673829 4.96E-07 6.30436576 -0.131220918 SRKT(ph)S(ph)GLSSSPST(ph)PT(ph)QVT(ph)K ddPTM_K562_Paclitaxel_30min_R1 2 SRKTSGLSSSPSTPTQVTK 19 2 A0A494C0H7;A0A494C094;F8WDA1;A0A494C188;A0A494C155;A0A494C1K7;Q9UGJ0-3;Q9UGJ0 A0A494C0H7 PRKAG2 5-AMP-activated protein kinase subunit gamma-2 5 S(0.693)RKT(0.623)S(0.651)GLS(0.041)S(0.129)S(0.261)PS(0.386)T(0.689)PT(0.758)QVT(0.77)K;S(0.544)RKT(0.574)S(0.583)GLS(0.249)S(0.049)S(0.027)PS(0.044)T(0.981)PT(0.975)QVT(0.975)K 51.473 0.021213 4143700 954.98 1085.68 1199.36 1062.11 1235.42 891.6 943.08 1187.51 1007.74 1691.01 TRUE FALSE 968.3526664 1204.218214 896.5667345 993.9910184 1403.70512 1049.712741 1122.024507 1086.623613 1104.53793 1346.381234 0.719226206 0.894411021 0.66590852 0.738268622 1.042576266 0.779654911 0.833363151 0.807069785 0.820375316 1 10.39487126 -15 0.163467056 1.682191143 0.767077311 0.267389211 0.097219591 196.5107152 1.822299104 43.71355034 0.398440995 1.00E-15 15 -0.915113832 SRLS(ph)AIEIDIPVVSHTT ddPTM_K562_Paclitaxel_30min_R1 3 SRLSAIEIDIPVVSHTT 17 1 P56749 P56749 CLDN12 Claudin-12 1 S(0.412)RLS(0.588)AIEIDIPVVSHTT;S(0.126)RLS(0.874)AIEIDIPVVSHTT;S(0.426)RLS(0.574)AIEIDIPVVSHTT 214.3 2.69E-23 133456000 6828.3 5927.1 7643.7 7220.6 5816.2 6459.6 6711.1 8338.5 8886 9649.5 TRUE FALSE 6923.917267 6574.240822 5713.953399 6757.503034 6608.464909 7605.119363 7984.496191 7630.092378 9739.540004 7682.926603 0.901208306 0.855694862 0.74372094 0.87954804 0.860149426 0.989872708 1.039251916 0.993123164 1.267686197 1 12.90744026 -7.538476665 1.182382368 1.098749792 0.834223752 0.649077724 0.079831709 0.28709784 0.82039281 0.0458119 0.032094852 2.89E-08 7.538476665 -0.264526039 SRLT(ph)PVSPES(ph)SSTEEK ddPTM_K562_Paclitaxel_30min_R1 1 SRLTPVSPESSSTEEK 16 1 E7EMC7;Q13501;Q13501-2 E7EMC7 SQSTM1 Sequestosome-1 2 S(0.23)RLT(0.77)PVS(0.165)PES(0.337)S(0.217)S(0.161)T(0.12)EEK 130.02 3.96E-05 26289000 2139.5 1649.9 3335 2168.7 1844 1719.7 1331.2 2194.5 1697.6 2779.1 TRUE FALSE 2169.459601 1830.041662 2493.038003 2029.609289 2095.184019 2024.664649 1583.788251 2008.063527 1860.662065 2212.717895 0.980450154 0.827056023 1.126685878 0.917247198 0.946882576 0.915012553 0.715766006 0.90750996 0.84089439 1 11.11160381 -7.530135841 24.97579435 0.85219997 0.956392499 0.169320757 0.095695041 280.0417621 963771.7895 0.035108822 0.027253125 2.95E-08 7.530135841 0.104192529 SRLT(ph)PVSPESSSTEEK ddPTM_K562_Paclitaxel_30min_R1 2 SRLTPVSPESSSTEEK 16 1 E7EMC7;Q13501;Q13501-2 E7EMC7 SQSTM1 Sequestosome-1 1 SRLT(0.999)PVS(0.001)PESSSTEEK;S(0.008)RLT(0.992)PVSPESSSTEEK 210.39 5.54E-17 83468000 10525.3 8984.8 18854 11621.2 9103.3 7992 7793.5 11883.1 8814.9 13008.9 TRUE FALSE 10672.68667 9965.790849 14094.07452 10875.86825 10343.32358 9409.268987 9272.27594 10873.55648 9661.610531 10357.67904 1.030412956 0.962164478 1.36073675 1.050029471 0.998614027 0.908434115 0.895207884 1.049806278 0.932796864 1 13.33841314 -6.717101845 3.513901885 0.958272283 1.114877198 0.299841237 0.105116181 0.295831253 7.514455542 0.033621055 0.042777218 1.92E-07 6.717101845 0.156604915 SRLTPVSPESS(ph)STEEK ddPTM_K562_Paclitaxel_30min_R1 2 SRLTPVSPESSSTEEK 16 1 E7EMC7;Q13501;Q13501-2 E7EMC7 SQSTM1 Sequestosome-1 1 SRLT(0.001)PVS(0.158)PES(0.302)S(0.473)S(0.044)T(0.022)EEK;SRLTPVS(0.107)PES(0.305)S(0.537)S(0.045)T(0.007)EEK 144.68 1.00E-07 39085000 4421.6 4050.6 8518.2 6526 4555.9 4005.8 3967.6 6456.2 3511 9027.5 TRUE FALSE 4483.516042 4492.858206 6367.675058 6107.451569 5176.490712 4716.172386 4720.431388 5907.705512 3848.247238 7187.690545 0.623777 0.625076745 0.885913913 0.849709866 0.720188311 0.65614572 0.656738261 0.821919847 0.535394118 1 12.81131258 -11.22903441 4.836914658 1.000053014 0.715890706 0.399214382 0.106983976 6.28E-05 1.00E-05 0.106414442 0.025804488 5.90E-12 11.22903441 -0.284162308 SRNT(ph)DEMVELR ddPTM_K562_Paclitaxel_30min_R1 1 SRNTDEMVELR 11 1 Q5T6W2;P61978-3;P61978;P61978-2;S4R457 Q5T6W2 HNRNPK Heterogeneous nuclear ribonucleoprotein K 1 S(0.002)RNT(0.998)DEMVELR 122.78 7.45E-08 0 1020.5 689.79 1342.4 1066.2 971.23 875.72 804.05 1099.3 878.32 1269.8 TRUE FALSE 1034.790149 765.1036049 1003.494517 997.8187041 1103.527969 1031.016646 956.6142901 1005.907603 962.6865604 1011.014063 1.023517067 0.756768509 0.992562373 0.986948392 1.091506053 1.019784674 0.946192862 0.994949171 0.952198981 1 9.98158735 -5.954394679 24.99968335 1.00025726 0.886273114 0.272206249 0.070535759 142.4631617 78093.20758 0.017617886 0.036674532 1.11E-06 5.954394679 -0.113984146 SRNTDEMVELR ddPTM_K562_Paclitaxel_30min_R1 2 SRNTDEMVELR 11 1 Q5T6W2;P61978-3;P61978;P61978-2;S4R457 Q5T6W2 HNRNPK Heterogeneous nuclear ribonucleoprotein K 0 ; 151.13 4.97E-29 6499900 3897.8 3602 4544.5 4293.1 3767.6 3601.9 3426.3 4835.3 3039.2 5550.8 FALSE TRUE 3952.381226 3995.278541 3397.184769 4017.759781 4280.810906 4240.646392 4076.422539 4424.511084 3331.12874 4419.543913 0.894296177 0.904002454 0.768673156 0.909089232 0.968609203 0.959521271 0.922362719 1.00112391 0.753726811 1 12.10968178 -6.510729835 24.61765939 0.935306282 0.856890013 0.183863235 0.073994827 790.187531 1601178.808 0.020530261 0.028709958 3.09E-07 6.510729835 -0.07841627 SRPEAVSHPLNTVTEDMYTNGS(ph)PAPGSPAQVK ddPTM_K562_Paclitaxel_30min_R1 1 SRPEAVSHPLNTVTEDMYTNGSPAPGSPAQVK 32 1 Q00013-3;Q00013;A6NFY0 Q00013-3 MPP1 55 kDa erythrocyte membrane protein 1 SRPEAVSHPLNTVTEDMY(0.011)T(0.049)NGS(0.939)PAPGSPAQVK 83.467 1.36E-07 127780000 2044 1647.4 3361.3 2022.6 1498.7 1268 1214.1 2121.4 2314.3 2571.3 TRUE FALSE 2072.622306 1827.268703 2512.698243 1892.879489 1702.848313 1492.861996 1444.469137 1941.173829 2536.598856 2047.267649 1.012384633 0.892540213 1.227342329 0.92458819 0.831766337 0.729197278 0.705559499 0.948177846 1.239016724 1 10.99948401 -6.503748538 24.44962533 0.886383717 1.036772695 0.116226579 0.160990626 1175.121025 1501879.44 0.048319334 0.070363801 3.14E-07 6.503748538 0.150388978 SRPEAVSHPLNTVTEDMYTNGSPAPGS(ph)PAQVK ddPTM_K562_Paclitaxel_30min_R1 1 SRPEAVSHPLNTVTEDMYTNGSPAPGSPAQVK 32 1 Q00013-3;Q00013;A6NFY0 Q00013-3 MPP1 55 kDa erythrocyte membrane protein 1 SRPEAVSHPLNTVTEDMYT(0.005)NGS(0.004)PAPGS(0.991)PAQVK 66.294 0.00011647 26055000 1270.9 1150.9 2384.2 1569.5 999.26 1042.9 1044.3 1612.4 1037.7 1588.2 TRUE FALSE 1288.696521 1276.559154 1782.279223 1468.839295 1135.37613 1227.843672 1242.450473 1475.416556 1137.375722 1264.523968 1.019115931 1.009517562 1.40944677 1.161574894 0.897868414 0.970992803 0.982544028 1.166776267 0.899449714 1 10.30437867 -6.739071672 24.70266773 0.993660347 1.158423661 0.293389895 0.123814643 285.2135363 314985.1793 0.038255144 0.049346607 1.82E-07 6.739071672 0.164763314 SRPEAVSHPLNTVTEDMYTNGSPAPGS(ph)PAQVKGQEVR ddPTM_K562_Paclitaxel_30min_R1 1 SRPEAVSHPLNTVTEDMYTNGSPAPGSPAQVKGQEVR 37 2 Q00013-3;Q00013 Q00013-3 MPP1 55 kDa erythrocyte membrane protein 1 SRPEAVSHPLNT(0.022)VT(0.312)EDMY(0.09)T(0.027)NGS(0.027)PAPGS(0.52)PAQVKGQEVR 62.034 8.10E-05 12442000 576.1 391.09 681.2 434.22 302.94 528.35 293.59 429.31 1155.5 642.38 TRUE FALSE 584.1671774 433.7905288 509.222635 406.3710727 344.2055568 622.0454541 349.2971699 392.8374358 1266.490938 511.4626034 1.142150323 0.848137334 0.995620465 0.79452744 0.672982843 1.216209064 0.682937848 0.768066782 2.476214154 1 8.998484948 -8.729329331 24.99983068 1.73810921 0.885743434 0.453466637 0.372372159 132.7329336 103341.8832 0.228095139 0.086196717 1.86E-09 8.729329331 -0.852365776 SRPLATGPSS(ph)QSHQEK ddPTM_K562_Paclitaxel_30min_R1 2 SRPLATGPSSQSHQEK 16 1 Q96RL1-2;Q96RL1-3;Q96RL1;D6RC40;D6RCQ3 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 SRPLAT(0.003)GPS(0.065)S(0.925)QS(0.007)HQEK;SRPLATGPS(0.103)S(0.885)QS(0.012)HQEK 105.92 0.0010583 16950100 2887.1 2368 4069.9 3038.7 2369.9 2391.88 2195.1 2888.6 2968.7 4534.7 TRUE FALSE 2927.528307 2626.546248 3042.403409 2843.811383 2692.720503 2816.046334 2611.608766 2643.1954 3253.8569 3610.525651 0.810831605 0.727469211 0.84264833 0.787644697 0.745797361 0.779954668 0.723332007 0.732080493 0.901214176 1 11.81799318 -8.958796181 3.932384056 0.998905598 0.769004458 0.807288625 0.037032789 0.076252555 2.595713345 0.036246401 0.009549017 1.10E-09 8.958796181 -0.22990114 SRPTPQDYEMRVS(ph)PSDTTPLVSR ddPTM_K562_Paclitaxel_30min_R1 1 SRPTPQDYEMRVSPSDTTPLVSR 23 2 H0YJG4;Q9HCK8-2;Q9HCK8 H0YJG4 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 SRPTPQDYEMRVS(0.96)PS(0.038)DT(0.002)TPLVSR 108.45 0.00018007 100050000 580.38 614.31 664 829.14 624.08 651.02 858.39 768.98 628.32 901.83 TRUE FALSE 588.5071106 681.3824433 496.3649878 775.9626715 709.0902618 766.4692562 1021.265021 703.6503492 688.6729434 718.036551 0.819606063 0.948952309 0.691280948 1.080672941 0.987540621 1.067451588 1.422302277 0.979964527 0.959105692 1 9.487913475 -6.285696131 23.29773487 1.081182227 0.832847056 0.407399344 0.138114234 327.3367891 314394.2417 0.040468799 0.06007297 5.18E-07 6.285696131 -0.248335171 SRPTS(ph)EGS(ph)DIESTEPQK ddPTM_K562_Paclitaxel_30min_R1 2 SRPTSEGSDIESTEPQK 17 1 H0YA82;Q4G0J3;Q4G0J3-3;D6RFF0 H0YA82 LARP7 La-related protein 7 2 S(0.009)RPT(0.088)S(0.902)EGS(0.987)DIES(0.01)T(0.002)EPQK;SRPT(0.006)S(0.974)EGS(0.489)DIES(0.483)T(0.047)EPQK 151.31 1.71E-07 77750000 13226 11059.3 22245.3 14275.1 10862.8 9498.7 8913.9 13128.1 9241.6 17104.2 TRUE FALSE 13411.20481 12266.79177 16629.19889 13359.55898 12342.49727 11183.16108 10605.26599 12012.78596 10129.29697 13618.35465 0.984788923 0.900754319 1.221087225 0.980996554 0.906313397 0.821182982 0.778747966 0.882102594 0.743797414 1 13.73326479 -6.849252356 2.731870999 0.835619537 1.030851756 0.416995961 0.098875899 0.251483598 3.810905297 0.03233771 0.038529392 1.41E-07 6.849252356 0.195232219 SRPTS(ph)EGSDIESTEPQKQCSK ddPTM_K562_Paclitaxel_30min_R1 1 SRPTSEGSDIESTEPQKQCSK 21 2 H0YA82;Q4G0J3;Q4G0J3-3;D6RFF0 H0YA82 LARP7 La-related protein 7 1 S(0.102)RPT(0.25)S(0.324)EGS(0.324)DIESTEPQKQCSK 57.802 0.014385 14062000 2600.7 1612.6 5134.8 2974.1 1608.4 1286.9 1571.2 2246.8 2638 3090.8 TRUE FALSE 2637.117824 1788.669121 3838.456234 2783.354538 1827.49131 1515.113646 1869.326998 2055.920316 2891.391687 2460.893263 1.071609997 0.726837343 1.559781682 1.131034238 0.742612992 0.615676295 0.759613196 0.835436606 1.174935837 1 11.26496637 -6.751406605 24.49177803 0.829777545 1.125315022 0.231842598 0.236001001 234.0200953 571280.6461 0.072682007 0.092660888 1.77E-07 6.751406605 0.295537477 SRPTSEGS(ph)DIESTEPQK ddPTM_K562_Paclitaxel_30min_R1 3 SRPTSEGSDIESTEPQK 17 1 H0YA82;Q4G0J3;Q4G0J3-3;D6RFF0 H0YA82 LARP7 La-related protein 7 1 S(0.013)RPT(0.155)S(0.095)EGS(0.738)DIESTEPQK;SRPT(0.001)S(0.001)EGS(0.999)DIESTEPQK;S(0.001)RPT(0.002)S(0.006)EGS(0.988)DIES(0.004)TEPQK 138.82 2.05E-09 210245000 10899.1 9024.2 19678.6 12627 9268.4 8163.6 8289.7 12339.4 8019.4 14851.9 TRUE FALSE 11051.72103 10009.49267 14710.49405 11817.16074 10530.913 9611.299837 9862.6273 11291.09095 8789.699202 11825.07463 0.934600531 0.846463383 1.244008559 0.999330753 0.890557847 0.812789783 0.834043557 0.954843103 0.743310252 1 13.52956167 -6.791647601 4.547081742 0.863492407 1.012711125 0.244569434 0.11501751 0.280389193 13.37137622 0.036332444 0.043271891 1.62E-07 6.791647601 0.149218718 SRPTSEGS(ph)DIESTEPQKQCSK ddPTM_K562_Paclitaxel_30min_R1 1 SRPTSEGSDIESTEPQKQCSK 21 2 H0YA82;Q4G0J3;Q4G0J3-3;D6RFF0 H0YA82 LARP7 La-related protein 7 1 S(0.019)RPT(0.046)S(0.066)EGS(0.868)DIEST(0.001)EPQKQCSK 73.127 0.0020437 91232000 2661.6 1793.1 5480.2 2801.9 2203.5 1765.2 1999.9 2478.6 3200.8 3669.7 TRUE FALSE 2698.870612 1988.876722 4096.655732 2622.198675 2503.654006 2078.233435 2379.370585 2268.027459 3508.251142 2921.813126 0.923697203 0.680699496 1.402093685 0.897455984 0.856883688 0.71128212 0.814347285 0.776239739 1.200710309 1 11.51264819 -2.713634899 11.62939224 0.914700848 1.098960662 0 0.213477963 0 0 0.048833072 0 0.001933593 2.713634899 0.184259814 SRQPS(ph)GAGLCDISEGTVVPEDR ddPTM_K562_Paclitaxel_30min_R1 1 SRQPSGAGLCDISEGTVVPEDR 22 1 H0Y332;Q5T5C0-3;Q5T5C0-2;Q5T5C0 H0Y332 STXBP5 Syntaxin-binding protein 5 1 S(0.318)RQPS(0.682)GAGLCDISEGTVVPEDR 83.088 0.00080386 46001000 716.87 807.54 856 993.62 746.57 711.15 903.07 1141.5 1001.1 974.3 TRUE FALSE 726.9083917 895.7099481 639.8922131 929.8936605 848.2654735 837.2624675 1074.422818 1044.52245 1097.260128 775.7371252 0.937055051 1.154656544 0.824882802 1.198722648 1.093496039 1.079312102 1.385034676 1.346490217 1.414474172 1 9.599424038 -7.698339185 6.43279906 1.314930306 1.049732051 0.384356128 0.146264361 0.191594317 14.88296617 0.053953604 0.041262569 2.00E-08 7.698339185 -0.265198254 SRQPS(ph)PLLLLPPPAGLTSDPGPSVR ddPTM_K562_Paclitaxel_30min_R1 1 SRQPSPLLLLPPPAGLTSDPGPSVR 25 1 I3L2J0 I3L2J0 CIC 1 S(0.26)RQPS(0.74)PLLLLPPPAGLTSDPGPSVR 63.559 0.0032035 43276000 1438.8 1321 2012.4 1868.7 1321.4 1489.2 1481 1798 1464.3 2016.5 TRUE FALSE 1458.947639 1465.231247 1504.344731 1748.849946 1501.397051 1753.288711 1762.012019 1645.248677 1604.952558 1605.536193 0.908698069 0.912611783 0.936973416 1.089262237 0.935137469 1.092026899 1.097460167 1.024734717 0.999636486 1 10.64883947 -6.120627057 5.414062877 1.035738207 0.913904187 0.550653842 0.047729473 0.167031732 6.686163453 0.013158699 0.023382205 7.57E-07 6.120627057 -0.121834021 SRS(ph)DIDVNAAAGAK ddPTM_K562_Paclitaxel_30min_R1 3 SRSDIDVNAAAGAK 14 1 E3W994;J3KR49;O75122;E7ERI8;E7EW49;O75122-3;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2 E3W994 CLASP2 CLIP-associating protein 2 1 S(0.007)RS(0.993)DIDVNAAAGAK;S(0.087)RS(0.913)DIDVNAAAGAK;S(0.005)RS(0.995)DIDVNAAAGAK 162.82 0.0003389 456457000 6725.3 5289.86 10054.5 6562.05 5257.41 4384.94 4597.18 6347.64 5982.72 7518.88 TRUE FALSE 6819.474949 5867.424804 7516.117123 6141.189484 5973.558251 5162.547541 5469.470906 5808.368361 6557.386988 5986.528129 1.139136876 0.980104775 1.255505188 1.0258349 0.997833489 0.862360859 0.913629868 0.970239885 1.09535725 1 12.54750384 -6.56200757 3.944967706 0.964328521 1.114739898 0.381873586 0.0847988 0.228952058 7.680593394 0.025809223 0.035163085 2.74E-07 6.56200757 0.150411377 SRS(ph)DIDVNAAASAK ddPTM_K562_Paclitaxel_30min_R1 1 SRSDIDVNAAASAK 14 1 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 S(0.227)RS(0.773)DIDVNAAASAK 137.99 5.24E-06 214310000 5767.4 4360.5 9602.5 6412.3 5503.7 4500.6 4077.8 6452 6460.8 7301.2 TRUE FALSE 5848.161394 4836.594136 7178.230113 6001.043778 6253.397118 5298.718218 4851.541262 5903.862328 7081.388708 5813.211432 1.006012161 0.832000383 1.234813183 1.032311288 1.075721603 0.911495871 0.834571617 1.015593944 1.218154335 1 12.50511967 SRS(ph)DVDMDAAAEATR ddPTM_K562_Paclitaxel_30min_R1 2 SRSDVDMDAAAEATR 15 1 O15085;O15085-2 O15085 ARHGEF11 Rho guanine nucleotide exchange factor 11 1 S(0.133)RS(0.867)DVDMDAAAEATR;S(0.054)RS(0.946)DVDMDAAAEATR 103.99 0.0024421 28800000 1391.84 1364.32 1876.14 1626.18 1477.4 1329.9 1101.85 1754.28 1446.57 1965.17 TRUE FALSE 1411.330054 1513.281071 1402.485253 1521.884093 1678.646893 1565.739092 1310.920285 1605.242964 1585.519512 1564.667275 0.90200011 0.967158383 0.896347278 0.97265669 1.072845914 1.000685013 0.83782687 1.025932471 1.013326946 1 10.61164019 -6.504229282 23.30642863 0.989172649 0.927723274 0.214771258 0.059407494 578.0163031 722352.3464 0.017776513 0.025803193 3.13E-07 6.504229282 -0.061449375 SRS(ph)DVDMDPSSATAVLGPAR ddPTM_K562_Paclitaxel_30min_R1 3 SRSDVDMDPSSATAVLGPAR 20 1 M0QZR4;M0QZH8;M0QYS3;M0QYC1 M0QZR4 ARHGEF1 1 S(0.161)RS(0.839)DVDMDPSSATAVLGPAR;S(0.022)RS(0.978)DVDMDPSSATAVLGPAR;SRS(1)DVDMDPSSATAVLGPAR 198.49 8.40E-19 212117000 5104 4702.3 6429.7 5799.7 5059.8 5050.3 4880.8 6154 5443.8 7052.6 TRUE FALSE 5175.471747 5215.713016 4806.442713 5427.7332 5749.030423 5945.899795 5806.906321 5631.179288 5966.701314 5615.276249 0.921677139 0.928843531 0.855958372 0.966601278 1.023819696 1.058879302 1.034126562 1.002832103 1.062583754 1 12.45514128 -6.580412942 3.266558917 1.032225107 0.904778433 0.823030531 0.026636394 0.093750015 2.038967452 0.008030288 0.011043258 2.63E-07 6.580412942 -0.127446674 SRS(ph)ESETSTMAAK ddPTM_K562_Paclitaxel_30min_R1 2 SRSESETSTMAAK 13 1 A0A087WVF1;Q96B23-2;Q96B23 A0A087WVF1 C18orf25 Uncharacterized protein C18orf25 1 S(0.007)RS(0.874)ES(0.085)ET(0.026)S(0.008)T(0.001)MAAK;S(0.211)RS(0.727)ES(0.061)ETSTMAAK 135.47 0.00049738 42012000 4905 4399.3 9221 5743.4 3771.4 3199.5 3445.1 5402.2 4789.9 6621.3 TRUE FALSE 4973.685133 4879.630451 6893.044506 5375.044031 4285.12853 3766.886402 4098.78974 4943.249391 5249.991297 5271.875425 0.943437531 0.925596691 1.307512782 1.019569621 0.812828108 0.714524927 0.777482283 0.937664302 0.995848891 1 12.36410056 -6.668177432 5.654010384 0.857740038 1.063186107 0.304020116 0.129684447 0.25132196 12.2799747 0.04116329 0.053171852 2.15E-07 6.668177432 0.20544607 SRS(ph)FTLDDESLK ddPTM_K562_Paclitaxel_30min_R1 1 SRSFTLDDESLK 12 1 Q86WR7;Q86WR7-2;X6RHS9 Q86WR7 PROSER2 Proline and serine-rich protein 2 1 S(0.156)RS(0.844)FTLDDESLK 121.99 0.006243 11462000 1277.2 1059 2232.1 1228.1 1007.8 1022.3 985.06 1468 1120.9 1742.8 TRUE FALSE 1295.08474 1174.625201 1668.578749 1149.335163 1145.079422 1203.590551 1171.969993 1343.284237 1228.567453 1387.616403 0.933316108 0.846505705 1.202478397 0.828280179 0.825213236 0.867379881 0.844592201 0.968051569 0.885379742 1 10.43839308 SRS(ph)GEGEVSGLMR ddPTM_K562_Paclitaxel_30min_R1 5 SRSGEGEVSGLMR 13 1 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 S(0.211)RS(0.789)GEGEVSGLMR;S(0.034)RS(0.966)GEGEVSGLMR;S(0.179)RS(0.821)GEGEVSGLMR;S(0.045)RS(0.955)GEGEVSGLMR;S(0.233)RS(0.767)GEGEVSGLMR 148.18 0.00017506 2219762000 7642.46 7263.3 9884.13 8533.59 7370.49 7317.39 7120.72 9032.33 7687.27 9533.51 TRUE FALSE 7749.478019 8056.331657 7388.759136 7986.283732 8374.475521 8615.026375 8471.839447 8264.977188 8425.666631 7590.575429 1.020934196 1.061359805 0.973412254 1.052131529 1.103272815 1.134963542 1.116099764 1.088847251 1.110016851 1 12.88999354 -6.609131608 4.155672157 1.099727872 1.021362003 0.403611168 0.039595195 0.192818819 6.26224195 0.011419659 0.015089879 2.46E-07 6.609131608 -0.078365869 SRS(ph)LGGAVGSVASGAR ddPTM_K562_Paclitaxel_30min_R1 2 SRSLGGAVGSVASGAR 16 1 Q8NHG8 Q8NHG8 ZNRF2 E3 ubiquitin-protein ligase ZNRF2 1 S(0.059)RS(0.941)LGGAVGSVASGAR;S(0.011)RS(0.989)LGGAVGSVASGAR 86.258 0.010292 42523000 1563.56 1314.45 1707.05 1783.07 1327.63 1289.12 1269.35 2088.34 1436.68 2191.17 TRUE FALSE 1585.454664 1457.966096 1276.084115 1668.711871 1508.475683 1517.727332 1510.202536 1910.922482 1574.679533 1744.608351 0.908773974 0.835698221 0.731444461 0.956496551 0.864650041 0.869953036 0.865639864 1.095330353 0.902597728 1 10.76868749 -8.167747619 9.020314063 0.999007116 0.859522076 0.455012442 0.068942694 0.317053716 28.16867286 0.031828954 0.018350056 6.80E-09 8.167747619 -0.13948504 SRS(ph)PHEAGFCVYLK ddPTM_K562_Paclitaxel_30min_R1 1 SRSPHEAGFCVYLK 14 1 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 1 S(0.154)RS(0.846)PHEAGFCVYLK 96.773 0.0063149 19899000 1148.7 1018 1268.5 963.41 529.5 766.87 1175.8 1339.6 871.27 1856.7 TRUE FALSE 1164.785344 1129.148683 948.2514864 901.6211947 601.6268645 902.8636271 1398.901912 1225.792618 954.9593764 1478.303521 0.787920294 0.763813836 0.641445734 0.609902623 0.406971137 0.610743068 0.946288697 0.82918873 0.645983293 1 10.52972679 -7.746565958 24.99911924 0.841130908 0.631114661 0.403604039 0.129588533 270.8928359 455314.6856 0.053261982 0.041083102 1.79E-08 7.746565958 -0.210016248 SRS(ph)PLHPMSEIPR ddPTM_K562_Paclitaxel_30min_R1 1 SRSPLHPMSEIPR 13 1 Q9NVW2-2;Q9NVW2 Q9NVW2-2 RLIM E3 ubiquitin-protein ligase RLIM 1 S(0.013)RS(0.98)PLHPMS(0.008)EIPR 77.191 0.027108 105970000 1348.8 1459.5 1939.8 1726.4 1403.7 1152.6 1363.1 1604.1 1505.2 1521.1 TRUE FALSE 1367.687361 1618.853146 1450.073499 1615.676431 1594.907705 1356.997427 1621.741109 1467.821693 1649.781185 1211.098985 1.129294449 1.336681118 1.197320382 1.334058117 1.316909455 1.120467809 1.339065699 1.211975 1.362218288 1 10.24210107 -14.65211654 6.66944883 1.209438806 1.247234658 0 0.116998768 0 0 0 0.024189509 2.23E-15 14.65211654 0.037795852 SRS(ph)PLHPMSEIPRR ddPTM_K562_Paclitaxel_30min_R1 1 SRSPLHPMSEIPRR 14 2 Q9NVW2-2;Q9NVW2 Q9NVW2-2 RLIM E3 ubiquitin-protein ligase RLIM 1 S(0.072)RS(0.928)PLHPMSEIPRR 95.273 0.0048911 58330000 687 775.03 1176.9 780.74 754.65 745.78 665.44 696.86 856.59 575.15 TRUE FALSE 696.6201196 859.6503964 879.7770393 730.6668309 857.4461063 878.0336117 791.7037662 637.6573933 938.8692968 457.9341143 1.521223464 1.877235981 1.921186939 1.595571957 1.872422428 1.917379781 1.728859549 1.392465364 2.050227899 1 8.838996234 -11.28168209 3.472106648 0.997600229 1.762789473 0.579442502 0.195277542 62887422.93 96310522.1 1618598.843 0.046348348 5.23E-12 11.28168209 0.765189244 SRS(ph)PSTESQLMSK ddPTM_K562_Paclitaxel_30min_R1 1 SRSPSTESQLMSK 13 1 P35612;A0A1C7CYY0;P35612-5;P35612-6;P35612-4;P35612-3 P35612 ADD2 Beta-adducin 1 S(0.015)RS(0.735)PS(0.205)T(0.045)ESQLMSK 100.22 0.0058934 9835300 2804.8 2676.8 5299.9 3362 2546.4 2359.1 2543.3 3321.9 2087.2 4522.3 TRUE FALSE 2844.075854 2969.062076 3961.874697 3146.376368 2893.262791 2777.453262 3025.877898 3039.68386 2287.684886 3600.652778 0.789877844 0.824589945 1.100321231 0.873834986 0.803538405 0.771374924 0.840369257 0.844203551 0.635352817 1 11.81404277 -6.646545966 4.939432261 0.807378081 0.910130264 0.109337061 0.113447224 0.419094463 16.35733016 0.033827261 0.043905949 2.26E-07 6.646545966 0.102752183 SRS(ph)RDDLYDQDDSRDFPR ddPTM_K562_Paclitaxel_30min_R1 1 SRSRDDLYDQDDSRDFPR 18 3 S4R3V8;Q86X29-6;Q86X29-5;Q86X29-2;Q86X29-3;Q86X29-4;Q86X29 S4R3V8 LSR Lipolysis-stimulated lipoprotein receptor 1 S(0.285)RS(0.534)RDDLY(0.181)DQDDSRDFPR 83.359 0.008549 29270000 847.13 780.84 1520.8 1042.8 1029 825.7 667.2 649.14 846.74 790.16 TRUE FALSE 858.9924336 866.0947518 1136.855231 975.9194754 1169.167221 972.1263016 793.797717 593.9915052 928.0731603 629.1249583 1.3653765 1.376665701 1.807042013 1.551233126 1.858402223 1.54520384 1.261748889 0.944155048 1.475180961 1 9.297202787 -7.808264361 3.713125539 1.149893309 1.598996414 0.518992195 0.197466443 0.185970406 5.278256804 0.086674123 0.058523017 1.56E-08 7.808264361 0.449103105 SRS(ph)SDIVSSVR ddPTM_K562_Paclitaxel_30min_R1 2 SRSSDIVSSVR 11 1 Q14C86-4;Q14C86-2;Q14C86-6;F8W9S7;Q14C86-3;Q14C86-5;Q14C86;H0Y4E7;H0Y7I9;C9IZ08 Q14C86-4 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 S(0.201)RS(0.776)S(0.023)DIVSSVR;SRS(0.771)S(0.224)DIVS(0.005)SVR 179.83 0.0019877 186337000 4500.4 3928.2 5424.1 4990.3 4052.5 3669.9 3865.9 4870.3 5319 5062.9 TRUE FALSE 4563.419485 4357.09416 4054.718871 4670.244494 4604.519109 4320.705237 4599.434344 4456.537616 5829.913716 4031.078201 1.13205928 1.080875623 1.005864602 1.158559636 1.14225497 1.071848528 1.140993579 1.105544818 1.446241781 1 11.97695006 -8.595707234 25 1.240713276 1.103677682 0.155918531 0.108620225 62.53481173 21463.90777 0.067059092 0.025345956 2.54E-09 8.595707234 -0.137035594 SRS(ph)TCGDSEVEEESPGKR ddPTM_K562_Paclitaxel_30min_R1 1 SRSTCGDSEVEEESPGKR 18 2 O95696;O95696-2 O95696 BRD1 Bromodomain-containing protein 1 1 S(0.131)RS(0.434)T(0.434)CGDSEVEEESPGKR 62.999 0.028097 0 825.54 685.09 1109.2 803.21 731.38 619.26 614.63 774.79 513.05 915.79 TRUE FALSE 837.100107 759.890443 829.1687416 751.6957056 831.0063384 729.0770662 731.2528339 708.9667534 562.3307449 729.1514953 1.148046891 1.042157148 1.137169363 1.030918417 1.139689548 0.999897924 1.002881896 0.972317492 0.771212496 1 9.510074783 -7.914584455 1.25185925 0.896995282 1.094364028 0.566568429 0.069089729 0.327919746 0.997067255 0.04636141 0.023191429 1.22E-08 7.914584455 0.197368746 SRS(ph)VSSVAGMGMDPSTAGGVPFGLYTPASR ddPTM_K562_Paclitaxel_30min_R1 1 SRSVSSVAGMGMDPSTAGGVPFGLYTPASR 30 1 H3BRB6;Q8ND25;Q8ND25-2 H3BRB6 ZNRF1 E3 ubiquitin-protein ligase ZNRF1 1 S(0.072)RS(0.492)VS(0.216)S(0.216)VAGMGMDPS(0.002)T(0.002)AGGVPFGLYTPASR 61.177 0.00089765 9845500 748.07 727.07 781.15 761.94 610.33 819.04 814.79 825.57 974.97 899.1 TRUE FALSE 758.545288 806.4539614 583.9390214 713.0725787 693.467279 964.2852441 969.392149 755.4326755 1068.620225 715.8629265 1.059623651 1.126548019 0.815713455 0.99610212 0.968715173 1.34702498 1.354158894 1.055275595 1.492772129 1 9.483539556 -7.252834906 24.8607011 1.259820581 0.991026145 0.411545693 0.153116305 563.0189908 1626718.479 0.048971789 0.048229189 5.59E-08 7.252834906 -0.268794435 SRS(ph)WEDSPER ddPTM_K562_Paclitaxel_30min_R1 1 SRSWEDSPER 10 1 Q9UDY2-7;Q9UDY2-4;A0A3B3IU51;A0A1B0GTW1;A0A3B3ITE1;A0A2R8YDH4;Q9UDY2-2;Q9UDY2-6;Q9UDY2-3;Q9UDY2;Q9UDY2-5;A0A3B3ISF1;A0A3B3ISZ5;A0A3B3IRI3;A0A3B3IRV6;B1AN86;A0A3B3IU26 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 S(0.001)RS(0.998)WEDS(0.001)PER 77.74 0.028772 16406000 801.54 579.37 953.08 810.77 733.02 612.81 590.31 660.4 694.29 912.27 TRUE FALSE 812.764033 642.6275759 712.4631665 758.7708411 832.8697341 721.4832492 702.3182409 604.2948979 760.9796567 726.3488732 1.118971975 0.884736797 0.980882869 1.044636908 1.146652476 0.993301258 0.966915854 0.831962326 1.047677892 1 9.504518847 SRSDVDMDPSS(ph)ATAVLGPAR ddPTM_K562_Paclitaxel_30min_R1 1 SRSDVDMDPSSATAVLGPAR 20 1 M0QZR4;M0QZH8;M0QYS3;M0QYC1 M0QZR4 ARHGEF1 1 S(0.002)RS(0.143)DVDMDPS(0.261)S(0.571)AT(0.023)AVLGPAR 138.02 2.84E-10 30197000 1297.2 1548.2 2180.5 1917.5 1552.9 1646.8 1493.6 1869.8 1874 2523.2 TRUE FALSE 1315.364802 1717.237712 1630.005807 1794.520132 1764.431271 1938.836858 1777.002803 1710.948819 2054.006073 2008.970455 0.654745718 0.854784951 0.811363752 0.893253621 0.878276366 0.965089782 0.884534065 0.851654545 1.022417263 1 10.97224063 -4.02333374 0.470417044 0.940583612 1.10E-32 0.696962861 0.054768956 8.470904593 0.588793509 0.032859155 5.675512993 9.48E-05 4.02333374 -0.940583612 SRSPST(ph)ESQLMSK ddPTM_K562_Paclitaxel_30min_R1 1 SRSPSTESQLMSK 13 1 P35612;A0A1C7CYY0;P35612-5;P35612-6;P35612-4;P35612-3 P35612 ADD2 Beta-adducin 1 SRS(0.002)PS(0.069)T(0.921)ES(0.008)QLMSK 115.38 2.19E-06 0 1358.1 1214 2328.4 1607.8 1286.4 1503.2 1080.4 1758.7 980.53 1532.8 TRUE FALSE 1377.11759 1346.548625 1740.566623 1504.682904 1461.629459 1769.771414 1285.40026 1609.287458 1074.714288 1220.414519 1.128401514 1.103353496 1.426209371 1.232927732 1.197650009 1.450139594 1.053248909 1.318640046 0.880614145 1 10.25315553 -8.763658643 24.99846358 0.940306962 1.239841379 0.471215498 0.126485819 50.08487775 564107.2486 0.101218773 0.031019916 1.72E-09 8.763658643 0.299534418 SRSRS(ph)DS(ph)PPRQAPR ddPTM_K562_Paclitaxel_30min_R1 1 SRSRSDSPPRQAPR 14 3 A0A0A0MSF3;Q96S94-3;Q96S94 A0A0A0MSF3 CCNL2 Cyclin-L2 2 SRS(0.004)RS(0.999)DS(0.996)PPRQAPR 62.68 0.026154 0 2273 1919.7 3018.1 2558.3 2056.8 2090.1 1839.3 2003 1815.4 1890.5 TRUE FALSE 2304.829013 2129.299338 2256.143328 2394.222089 2336.970982 2460.749889 2188.297573 1832.832648 1989.777281 1505.215062 1.531229039 1.41461469 1.498884368 1.590617945 1.552582777 1.634816147 1.453810574 1.217655001 1.32192225 1 10.55575392 -8.728311731 0.994284933 1.027363993 1.535130578 0.805053284 0.081358374 0.220700533 0.452379307 0.080980858 0.028368598 1.87E-09 8.728311731 0.507766584 SRSVSGVLNGGKSMS(ph)HNEST ddPTM_K562_Paclitaxel_30min_R1 2 SRSVSGVLNGGKSMSHNEST 20 2 Q92913-2;Q92913-4;Q92913-5;Q92913;Q92913-3 Q92913-2 FGF13 Fibroblast growth factor 13 1 SRSVSGVLNGGKS(0.054)MS(0.698)HNES(0.132)T(0.116);SRSVSGVLNGGKS(0.07)MS(0.823)HNES(0.058)T(0.049) 63.443 0.014723 69292000 1888.97 1776.83 1911.09 2146.8 2087 1588.31 1881.62 2324 1613.89 2099.61 TRUE FALSE 1915.421408 1970.830308 1428.611693 2009.113857 2371.284733 1869.974478 2238.647572 2126.561694 1768.911346 1671.708329 1.145786842 1.178931919 0.854581908 1.201832773 1.418479941 1.118600921 1.339137655 1.27208895 1.058145918 1 10.70710744 -6.492301273 24.74959444 1.225886409 1.064437357 0.1562497 0.143697794 933.5365319 755610.0361 0.03938894 0.058330286 3.22E-07 6.492301273 -0.161449052 SRT(ph)ASLTSAASVDGNR ddPTM_K562_Paclitaxel_30min_R1 2 SRTASLTSAASVDGNR 16 1 G3V578;H0YJT9;A0A0A0MS87;Q9UN36-4;Q9UN36-5;Q9UN36-2;Q9UN36-3;Q9UN36-6;Q9UN36 G3V578 NDRG2 Protein NDRG2 1 S(0.001)RT(0.994)AS(0.005)LTSAASVDGNR;S(0.002)RT(0.975)AS(0.02)LT(0.001)S(0.001)AASVDGNR 105.39 0.0069656 20185800 2813.4 2079.72 3449.4 3260.6 1844.28 2277.35 3321.6 4712.3 2750.5 6216 TRUE FALSE 2852.79628 2306.790863 2578.556308 3051.47971 2095.50216 2681.206047 3951.85626 4311.960702 3014.697815 4949.175788 0.576418459 0.466095965 0.521007218 0.61656321 0.42340427 0.541747992 0.798487754 0.871248241 0.609131286 1 12.27297257 -7.754735959 5.376450174 0.811229767 0.519478635 0.666671442 0.102411807 0.103052788 9.004593375 0.039547363 0.028500733 1.76E-08 7.754735959 -0.291751132 SRT(ph)GS(ph)ESSQTGTSTTSSR ddPTM_K562_Paclitaxel_30min_R1 1 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 2 S(0.117)RT(0.884)GS(0.997)ES(0.002)SQTGTSTTSSR 99.414 0.0033899 5405100 632.16 545.17 729.68 660.1 332.58 418.61 419.16 517.94 560.3 407.73 TRUE FALSE 641.0121904 604.6935042 545.4632594 617.7641405 377.8830266 492.8446059 498.6934218 473.9377641 614.1193185 324.6344022 1.974566423 1.862690769 1.680238618 1.902953403 1.164026437 1.518152736 1.53616936 1.459912323 1.891725936 1 8.342672083 -2 0.046060689 7.43E-13 4.428855229 0.454992862 0.230291472 571.6804191 1.999384317 48.08488353 185.9316062 0.01 2 4.428855229 SRT(ph)GSESSQTGTSTTSSR ddPTM_K562_Paclitaxel_30min_R1 1 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 S(0.009)RT(0.976)GS(0.015)ESSQTGTSTTSSR 99.414 0.0060687 8028700 0 0 71.176 0 0 0 0 0 0 0 TRUE FALSE 0 0 53.20673851 0 0 0 0 0 0 0 0 SRT(ph)PSASNDDQQE ddPTM_K562_Paclitaxel_30min_R1 1 SRTPSASNDDQQE 13 1 O43765 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 1 S(0.216)RT(0.778)PS(0.004)AS(0.001)NDDQQE 110.25 0.019205 3741500 1701.5 1745.9 2211.7 2275.3 1729.2 1835.9 1614.6 1994.4 1864.7 2266 TRUE FALSE 1725.32625 1936.523266 1653.328981 2129.372442 1964.746316 2161.471088 1920.961921 1824.963271 2043.812767 1804.187956 0.956289639 1.07334896 0.916384003 1.180238697 1.088992036 1.198029884 1.064723836 1.01151505 1.13281588 1 10.81713393 -6.259579035 24.99929071 1.099675289 0.99114168 0.35351156 0.070616525 193.7226707 2603227.657 0.019127387 0.031055938 5.50E-07 6.259579035 -0.108533609 SRT(ph)SRMAPPASRAPQMR ddPTM_K562_Paclitaxel_30min_R1 1 SRTSRMAPPASRAPQMR 17 3 Q9Y6H1;Q5T1J5 Q9Y6H1 CHCHD2;CHCHD2P9 "Coiled-coil-helix-coiled-coil-helix domain-containing protein 2;Putative coiled-coil-helix-coiled-coil-helix domain-containing protein CHCHD2P9, mitochondrial" 1 S(0.174)RT(0.413)S(0.413)RMAPPASRAPQMR 48.899 0.026478 20773000 1286.9 1132.8 1484 1450.5 1255.1 1061.3 1548 1380.3 820.75 972.63 TRUE FALSE 1304.92057 1256.482935 1109.345846 1357.471422 1426.065869 1249.506654 1841.724919 1263.034899 899.5867047 774.4074721 1.685056792 1.622508796 1.432509223 1.752916224 1.84149291 1.613500255 2.378237537 1.630969412 1.161645177 1 9.596949063 -8.774398207 3.724583023 1.027909451 1.755990286 0.569842978 0.234193299 0.164220911 4.574084232 0.222036582 0.062963504 1.68E-09 8.774398207 0.728080835 SRTGS(ph)ESSQTGTSTTSSR ddPTM_K562_Paclitaxel_30min_R1 1 SRTGSESSQTGTSTTSSR 18 1 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 S(0.229)RT(0.082)GS(0.675)ES(0.011)S(0.003)QTGTSTTSSR 75.054 0.011512 2403800 0 0 74.085 74.837 0 0 0 0 0 0 TRUE FALSE 0 0 55.38132548 70.03728978 0 0 0 0 0 0 0 SRTHS(ph)TSSSLGSGESPFSR ddPTM_K562_Paclitaxel_30min_R1 2 SRTHSTSSSLGSGESPFSR 19 1 F8WBF9;Q5TH30;Q9UGV2-3;Q9UGV2-2;Q9UGV2 F8WBF9 NDRG3 Protein NDRG3 1 SRT(0.004)HS(0.413)T(0.077)S(0.413)S(0.077)S(0.015)LGSGESPFSR;S(0.023)RT(0.023)HS(0.675)T(0.259)S(0.019)S(0.002)SLGSGESPFSR 132.66 2.39E-09 122878000 1272.14 1311 1079.44 1308.7 909.57 1152.66 1076.4 1618.51 1314.22 1845.76 TRUE FALSE 1289.953885 1454.139414 806.9220217 1224.76584 1033.468833 1357.068067 1280.641281 1481.007473 1440.456703 1469.593099 0.877762617 0.989484378 0.549078532 0.83340473 0.70323468 0.923431165 0.871425758 1.00776703 0.980173835 1 10.52120104 -7.842237228 1.478051877 0.995903499 0.794070184 0.357070534 0.11260609 0.476335041 2.088807231 0.071385727 0.039367255 1.44E-08 7.842237228 -0.201833315 SRTPS(ph)ASNDDQQE ddPTM_K562_Paclitaxel_30min_R1 1 SRTPSASNDDQQE 13 1 O43765 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 1 SRTPS(0.985)AS(0.015)NDDQQE 130.27 0.0011984 18466000 1822.6 1824.8 2674.1 2460 2503.8 1896.1 1508.4 1960.1 1784.3 2161.3 TRUE FALSE 1848.122023 2024.037835 1998.990382 2302.226611 2844.85995 2232.346712 1794.611026 1793.57727 1955.689987 1720.825874 1.07397387 1.176201419 1.161645936 1.337861457 1.653194546 1.297253108 1.042877756 1.042277024 1.13648337 1 10.74888541 -7.759791653 24.96778367 1.058932592 1.292240678 0.360193215 0.148518322 54.46801339 825366.688 0.066173295 0.048519516 1.74E-08 7.759791653 0.233308087 SRTS(ph)VQTEDDQLIAGQSAR ddPTM_K562_Paclitaxel_30min_R1 1 SRTSVQTEDDQLIAGQSAR 19 1 G3XAM7;P35221-3;P35221;P35221-2;A0A0A0MTJ6;A0A0A0MRI5;P26232-4;P26232-6;P26232-3;P26232-2;P26232-5;P26232 G3XAM7 CTNNA1;CTNNA2 Catenin alpha-1;Catenin alpha-2 1 S(0.021)RT(0.347)S(0.568)VQT(0.064)EDDQLIAGQSAR 113.23 0.000752 38807000 1349.6 1197.6 1722.6 1713.6 1342.8 1312.9 1355 1456 1230.9 1484.1 TRUE FALSE 1368.498564 1328.358018 1287.708325 1603.697366 1525.712094 1545.724381 1612.104176 1332.303712 1349.133445 1181.639605 1.158135321 1.124165111 1.089764019 1.357179768 1.291182258 1.308118291 1.364294298 1.12750428 1.141746975 1 10.20657437 -8.913586527 1.749262755 1.008467486 1.237937119 0.375167846 0.093483016 0.397455955 2.68441213 0.09855117 0.028516718 1.22E-09 8.913586527 0.229469634 SRWDETPASQMGGS(ph)TPVLTPGK ddPTM_K562_Paclitaxel_30min_R1 1 SRWDETPASQMGGSTPVLTPGK 22 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 SRWDETPASQMGGS(0.5)T(0.5)PVLTPGK 81.144 0.0009594 8232600 1073.8 824.58 1829.6 1222.7 1010.2 869.23 664.64 1191.5 485.24 1479.7 TRUE FALSE 1088.836513 914.610433 1367.694852 1144.281495 1147.806343 1023.375736 790.7519703 1090.274638 531.8494701 1178.136328 0.924202477 0.776319694 1.160896935 0.971264078 0.974255963 0.868639487 0.671188853 0.925423155 0.451432875 1 10.20229077 -7.524389765 4.364504537 0.755666814 0.960643408 0.249288991 0.162581025 0.28079757 13.26398221 0.059830765 0.048215914 2.99E-08 7.524389765 0.204976593 SRWDETPASQMGGST(ph)PVLTPGK ddPTM_K562_Paclitaxel_30min_R1 1 SRWDETPASQMGGSTPVLTPGK 22 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 SRWDETPASQMGGS(0.026)T(0.97)PVLT(0.004)PGK 110.38 0.00032609 10270000 1005.8 632.96 1699.7 1109.3 738.9 641.32 939.14 1244.2 508.94 1362.6 TRUE FALSE 1019.884303 702.0687133 1270.589713 1038.154463 839.5506897 755.0490974 1117.336912 1138.497444 557.825961 1084.901372 0.940070987 0.647126763 1.171156887 0.956911374 0.773849781 0.695961049 1.029897225 1.049401792 0.514172049 1 10.08334818 -6.739411514 24.92165696 0.848255252 0.926005836 0.043681614 0.193867756 1012.622224 1145644.702 0.057766312 0.074513164 1.82E-07 6.739411514 0.077750584 SS(ph)DEENGPPSS(ph)PDLDR ddPTM_K562_Paclitaxel_30min_R1 1 SSDEENGPPSSPDLDR 16 0 Q96B36-3;Q96B36;Q96B36-2 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 2 S(0.317)S(0.683)DEENGPPS(0.468)S(0.532)PDLDR 169.58 9.29E-53 0 1518 1345.2 2201.9 1691.3 1286.8 1623.9 1312 1692 1211.3 2166.9 TRUE FALSE 1539.256683 1492.073485 1646.003112 1582.827588 1462.083946 1911.875864 1560.945151 1548.254039 1327.650777 1725.284591 0.892175524 0.864827457 0.954047304 0.917429853 0.847445085 1.108151012 0.904746475 0.897390522 0.769525668 1 10.75261864 -2.022047029 23.2296042 0.9155904 0.004576513 0 0.086740726 0 0 0.019643618 0 0.009505019 2.022047029 -0.911013887 SS(ph)FSITR ddPTM_K562_Paclitaxel_30min_R1 1 SSFSITR 7 0 Q9Y2W1;A0A3B3ITZ9 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 S(0.2)S(0.787)FS(0.013)ITR 94.309 0.015439 7625600 676.84 747.44 852.66 626.73 379.46 772.67 579.24 718.23 438.1 718.23 TRUE FALSE 686.3178482 829.0480269 637.3954374 586.5343429 431.1488763 909.6921757 689.1477662 657.2118784 480.1814625 571.8543318 1.200162017 1.449753864 1.11461154 1.025670893 0.753948781 1.590776051 1.205110686 1.149264493 0.839691921 1 9.159503886 -2 0.129281973 0.956716123 1.999642989 0.099258219 0.228394491 238.3525478 2.0921944 1.326055511 45.27365249 0.01 2 1.042926866 SS(ph)GRSGSMDPSGAHPSVR ddPTM_K562_Paclitaxel_30min_R1 1 SSGRSGSMDPSGAHPSVR 18 1 Q07666-3;Q07666;Q07666-2 Q07666-3 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 1 S(0.247)S(0.748)GRS(0.005)GSMDPSGAHPSVR 98.552 0.0014559 0 1431.8 1505.5 1622 1628.3 1317.5 1108.3 1111.4 1298.3 1518.1 1652 TRUE FALSE 1451.849617 1669.875581 1212.506039 1523.868126 1496.965805 1304.841444 1322.282348 1188.001311 1663.920288 1315.321493 1.103798292 1.269556979 0.921832454 1.158551832 1.138098794 0.992032329 1.005292132 0.903202234 1.265029346 1 10.36119975 -7.256382774 24.74481262 1.025322655 1.118080909 0.114470265 0.1175689 802.4631839 3926915.808 0.038389003 0.037250672 5.54E-08 7.256382774 0.092758254 SS(ph)GSETEQVVDFSDR ddPTM_K562_Paclitaxel_30min_R1 1 SSGSETEQVVDFSDR 15 0 O95251;O95251-4;O95251-2 O95251 KAT7 Histone acetyltransferase KAT7 1 S(0.216)S(0.783)GS(0.001)ETEQVVDFSDR 140.49 2.43E-06 13856000 1348 1393.8 2013.6 1629.7 1495.4 1185.3 1273.8 1784.3 966.49 1701.4 TRUE FALSE 1366.876159 1545.979798 1505.241776 1525.178336 1699.098797 1395.496313 1515.4969 1632.712578 1059.325683 1354.653746 1.009022536 1.141236129 1.111163484 1.125880573 1.254267965 1.03014982 1.118733776 1.205261922 0.78199 1 10.40370843 -8.757068448 24.99999994 0.890994981 1.125619352 0.555182009 0.08358664 69.9134469 399895.5776 0.057996462 0.020196739 1.75E-09 8.757068448 0.23462437 SS(ph)GSPYGGGYGSGGGS(ph)GGYGSR ddPTM_K562_Paclitaxel_30min_R1 1 SSGSPYGGGYGSGGGSGGYGSR 22 0 P51991;H7C1J8;P51991-2 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 2 S(0.416)S(0.555)GS(0.029)PYGGGYGS(0.17)GGGS(0.83)GGYGSR 132.24 2.42E-10 5527900 1055.9 1179.3 1569 1293.6 1081.1 1087.5 1031.3 1174.1 1167.6 1532.1 TRUE FALSE 1070.685858 1308.059962 1172.886545 1210.634286 1228.364123 1280.352856 1226.983791 1074.352876 1279.753197 1219.857179 0.87771411 1.072305828 0.961494973 0.992439366 1.006973721 1.049592426 1.005842169 0.880720215 1.049100845 1 10.25249653 -5.235328282 23.62710895 0.998514731 0.877713775 0.346551929 0.051013123 4693.302565 4246685.088 0.01248734 0.852302854 5.82E-06 5.235328282 -0.120800956 SS(ph)ITEPEGPNGPNIQK ddPTM_K562_Paclitaxel_30min_R1 1 SSITEPEGPNGPNIQK 16 0 Q13625-2;Q13625;Q13625-3 Q13625-2 TP53BP2 Apoptosis-stimulating of p53 protein 2 1 S(0.188)S(0.811)IT(0.001)EPEGPNGPNIQK 175.66 2.92E-09 8937200 1174.7 844.05 2093.6 1323.8 849.16 728.89 778.32 1201.5 1097.3 1280.2 TRUE FALSE 1191.149424 936.2062334 1565.044787 1238.897393 964.8299684 858.1484074 926.0021569 1099.425075 1202.700568 1019.294537 1.168601793 0.9184845 1.535419576 1.215445926 0.946566408 0.841904254 0.90847358 1.078613723 1.179934282 1 9.99335528 -6.756059119 24.8820211 0.984773406 1.211982871 0.296125798 0.163543627 166.993995 772289.4808 0.051646377 0.064710092 1.75E-07 6.756059119 0.227209465 SS(ph)LGSHQLPR ddPTM_K562_Paclitaxel_30min_R1 1 SSLGSHQLPR 10 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 S(0.157)S(0.842)LGS(0.001)HQLPR 81.92 0.024488 7477600 775.93 681.61 959.45 772.25 736.54 855.92 717.16 1091.4 745.66 1104.3 TRUE FALSE 786.7954139 756.0304849 717.2249812 722.7213415 836.8692177 1007.705394 853.2373662 998.6787577 817.2839747 879.2430538 0.894855422 0.859865178 0.815730051 0.821981292 0.951806459 1.146105607 0.970422641 1.135839235 0.929531341 1 9.780118222 -6.96896483 4.686812842 1.0420655 0.848535651 0.642850863 0.065967847 0.113598472 6.046359452 0.01989406 0.022121895 1.07E-07 6.96896483 -0.193529849 SS(ph)LGSLQTPEAVTTR ddPTM_K562_Paclitaxel_30min_R1 1 SSLGSLQTPEAVTTR 15 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 S(0.23)S(0.77)LGSLQTPEAVTTR 177.66 1.46E-06 21809000 887.95 889.93 1246.5 1093.8 942.31 1135.6 770.95 1227 1038.1 1430.6 TRUE FALSE 900.3840396 987.0955669 931.8056585 1023.648564 1070.668575 1336.982715 917.2337379 1122.758691 1137.814143 1139.042935 0.790474189 0.866600843 0.818060171 0.898691816 0.939972097 1.173777278 0.805267045 0.985703574 0.998921207 1 10.15360641 -6.623213055 2.485100664 0.985233141 0.83047178 0.416350124 0.085340934 0.29889385 3.746040964 0.02716317 0.037683194 2.38E-07 6.623213055 -0.154761361 SS(ph)LNTVV ddPTM_K562_Paclitaxel_30min_R1 1 SSLNTVV 7 0 B7Z3C4;F6SYP7;P98153-2;P98153 B7Z3C4 DGCR2 Integral membrane protein DGCR2/IDD 1 S(0.112)S(0.591)LNT(0.297)VV 94.85 0.0059966 7784400 3051.2 2487.8 3230.8 2695.4 2461.9 2432.6 2060.4 3175.3 2371.2 3451 TRUE FALSE 3093.926214 2759.426417 2415.144582 2522.529108 2797.25246 2863.987455 2451.350144 2905.538445 2598.964355 2747.684306 1.12601226 1.004273457 0.878974552 0.91805638 1.018039974 1.042327697 0.892151307 1.057449882 0.94587444 1 11.42400054 SS(ph)PAFTK ddPTM_K562_Paclitaxel_30min_R1 2 SSPAFTK 7 0 Q5VVQ6-2;Q5VVQ6 Q5VVQ6-2 YOD1 Ubiquitin thioesterase OTU1 1 S(0.373)S(0.627)PAFTK;S(0.027)S(0.973)PAFTK 94.309 0.015439 31168000 8945.1 7422.4 15240.3 10548.5 7997.2 7218.1 7091.6 10285.4 8229.4 11945.9 TRUE FALSE 9070.358998 8232.802733 11392.69778 9871.966423 9086.554034 8498.128688 8437.194079 9411.591071 9019.87064 9511.319023 0.953638394 0.865579497 1.19780419 1.037917706 0.955341106 0.893475307 0.887068771 0.989514814 0.948330155 1 13.21542971 -6.87677934 5.583771712 0.938061109 1.015896143 0.133867292 0.08442685 0.429527322 19.35276093 0.027983047 0.031962388 1.33E-07 6.87677934 0.077835034 SS(ph)PAS(ph)SPELPWRPR ddPTM_K562_Paclitaxel_30min_R1 1 SSPASSPELPWRPR 14 1 Q9NYF3 Q9NYF3 FAM53C Protein FAM53C 2 S(0.454)S(0.547)PAS(0.546)S(0.453)PELPWRPR 96.163 0.009802 6002500 814.34 733.78 1219 1062.7 899.54 766.96 582.33 908.35 992.86 1028.9 TRUE FALSE 825.7432725 813.8965819 911.2483736 994.5431785 1022.072577 902.9695873 692.8240775 831.1799978 1088.228639 819.2096152 1.007975562 0.99351444 1.112350681 1.214027716 1.247632545 1.10224486 0.84572259 1.014612112 1.328388509 1 9.678088838 -5.762324625 24.79413607 1.107827753 1.000744974 0.098600747 0.129862291 51.8151562 1451477.036 0.036186916 0.083192843 1.73E-06 5.762324625 -0.107082779 SS(ph)PLSWR ddPTM_K562_Paclitaxel_30min_R1 1 SSPLSWR 7 0 Q8NEY1-2;Q8NEY1-3;Q8NEY1;A0A0A0MRJ3;Q8NEY1-6;Q8NEY1-7;Q8NEY1-4 Q8NEY1-2 NAV1 Neuron navigator 1 1 S(0.225)S(0.775)PLSWR 115.49 0.0033596 11349000 1774.6 1729.9 2270.5 1705.2 1826.1 1548.6 1460.7 1676.9 1094 2172.5 TRUE FALSE 1799.449875 1918.776332 1697.284194 1595.836104 2074.845736 1823.222467 1737.8602 1534.436878 1199.083588 1729.743307 1.040298793 1.10928386 0.981234722 0.922585506 1.199510775 1.054042215 1.004692541 0.887089357 0.693214758 1 10.75634224 -8.25917406 3.031005268 0.833135439 1.049644026 0.432550298 0.097741793 0.232042526 4.316649146 0.058081534 0.02690286 5.51E-09 8.25917406 0.216508587 SS(ph)PSILAVQR ddPTM_K562_Paclitaxel_30min_R1 1 SSPSILAVQR 10 0 O14646;O14646-2 O14646;O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 S(0.224)S(0.775)PS(0.001)ILAVQR 155.53 0.00018869 27673000 821.93 1116 1087.9 1014.3 1102.4 1155.3 884.93 1075.9 968.61 1367.5 TRUE FALSE 833.4395559 1237.848654 813.24619 949.2473378 1252.565544 1360.176234 1052.840848 984.4955794 1061.649318 1088.802749 0.765464228 1.136889721 0.746917833 0.871826727 1.150406301 1.249240264 0.966971151 0.904200123 0.975061203 1 10.0885269 -6.738063561 24.99398784 1.042902447 0.889078722 0.252223636 0.135195244 378.4291846 404623.8004 0.042000492 0.054189573 1.83E-07 6.738063561 -0.153823725 SS(ph)PVNNHHS(ph)PGQTPTLGQPEAR ddPTM_K562_Paclitaxel_30min_R1 2 SSPVNNHHSPGQTPTLGQPEAR 22 0 H0Y2V6;Q5SW79-2;Q5SW79-3;Q5SW79;E7EWM2;E7EMW0;Q96L14 H0Y2V6 CEP170;CEP170P1 Centrosomal protein of 170 kDa;Cep170-like protein 2 S(0.449)S(0.551)PVNNHHS(0.999)PGQT(0.001)PTLGQPEAR;S(0.446)S(0.555)PVNNHHS(0.999)PGQTPTLGQPEAR 109.08 0.00016106 62563000 2625.67 2664.01 3357.3 2920.2 2637.56 2468.3 2510.71 3168.4 2115.99 3362.1 TRUE FALSE 2662.437481 2954.875621 2509.708092 2732.911442 2996.840326 2906.018348 2987.104116 2899.224643 2319.240294 2676.902175 0.99459648 1.103841466 0.937541953 1.020923166 1.119518059 1.085590044 1.11588094 1.083052146 0.866389634 1 11.3863487 -8.749170069 24.99996773 0.933194801 1.058870957 0.385480899 0.062822809 201.9547968 411508.8943 0.04409117 0.016395747 1.78E-09 8.749170069 0.125676156 SS(ph)PVNNHHSPGQTPTLGQPEAR ddPTM_K562_Paclitaxel_30min_R1 1 SSPVNNHHSPGQTPTLGQPEAR 22 0 H0Y2V6;Q5SW79-2;Q5SW79-3;Q5SW79;E7EWM2;E7EMW0;Q96L14 H0Y2V6 CEP170;CEP170P1 Centrosomal protein of 170 kDa;Cep170-like protein 1 S(0.453)S(0.544)PVNNHHS(0.003)PGQTPTLGQPEAR 95.519 0.00028248 31334000 1104.4 1163.3 1440.2 1399.7 936.55 992.56 1213.7 1223.6 974.21 1467.4 TRUE FALSE 1119.865007 1290.313028 1076.603698 1309.929507 1064.123966 1168.57658 1443.993239 1119.647543 1067.787223 1168.343075 0.958506993 1.104395666 0.921479077 1.121185665 0.910797512 1.00019986 1.235932553 0.958320862 0.913932942 1 10.19024826 -8.484017909 24.99688652 0.950019426 1.036064391 0.12319251 0.095804681 1010.940054 650280.6367 0.051214229 0.024594423 3.28E-09 8.484017909 0.086044965 SS(ph)PVPPVPERR ddPTM_K562_Paclitaxel_30min_R1 1 SSPVPPVPERR 11 1 J3KPS2;A0A494C1T9;Q6ZRV2 J3KPS2 FAM83H Protein FAM83H 1 S(0.22)S(0.78)PVPPVPERR 89.663 0.010714 7931000 1115.8 1189.8 1617 1496.2 1110.5 936.77 955.95 1226.7 936.54 950.39 TRUE FALSE 1131.424643 1319.706388 1208.768351 1400.240429 1261.768901 1102.893007 1137.336522 1122.484178 1026.498852 756.6999963 1.495208997 1.744028537 1.59742085 1.850456503 1.667462544 1.45750365 1.50302171 1.483393926 1.356546659 1 9.563577628 -9.09393901 0.506486906 0.981825329 1.681276176 0.78914293 0.101666446 0.507851328 0.310269462 0.127457426 0.057913103 8.05E-10 9.09393901 0.699450846 SS(ph)SELNGVSTTSVVK ddPTM_K562_Paclitaxel_30min_R1 1 SSSELNGVSTTSVVK 15 0 Q99963-2;Q99963-4;Q99963;Q99963-3 Q99963-2 SH3GL3 Endophilin-A3 1 S(0.113)S(0.512)S(0.375)ELNGVSTTSVVK 139.08 1.65E-06 10375000 803.08 851.34 1688.5 1029.6 789.67 815.56 803.29 1127.8 1023.1 1568.2 TRUE FALSE 814.3255977 944.2921802 1262.217292 963.5660643 897.2364232 960.188115 955.710084 1031.98635 1121.373326 1248.599979 0.652190943 0.756280791 1.010906065 0.771717188 0.718593976 0.769011798 0.765425356 0.826514791 0.898104553 1 10.28609563 -8.930276334 1.757242158 0.998468785 0.783101573 0.402091276 0.086556138 0.378280106 2.604408121 0.086988981 0.025100878 1.17E-09 8.930276334 -0.215367211 SS(ph)SLEGFHNHFK ddPTM_K562_Paclitaxel_30min_R1 1 SSSLEGFHNHFK 12 0 Q13480-2;B7Z3B9;Q13480 Q13480-2 GAB1 GRB2-associated-binding protein 1 1 S(0.014)S(0.493)S(0.493)LEGFHNHFK 103.83 0.0060008 9765200 2532 2250.1 3820.4 2629.8 1769.6 2049.6 1944.7 3015.2 2408.1 3368.2 TRUE FALSE 2567.455812 2495.773527 2855.89277 2461.136399 2010.64948 2413.067782 2313.696673 2759.03994 2639.408765 2681.758991 0.957377535 0.930647957 1.064932673 0.917732133 0.749750252 0.899807846 0.862753395 1.028817261 0.984208042 1 11.38896387 -10.52969151 7.080956623 1.000035087 0.930655063 0.054375224 0.08348895 0 0 0.08746204 0.021212661 2.95E-11 10.52969151 -0.069380024 SS(ph)SMT(ph)RS(ph)PPRVSKR ddPTM_K562_Paclitaxel_30min_R1 1 SSSMTRSPPRVSKR 14 3 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 3 S(0.442)S(0.52)S(0.05)MT(0.985)RS(0.919)PPRVS(0.083)KR 43.69 0.031205 0 196.91 188.2 234.12 213.09 371.13 252.04 269.3 139.2 248.45 196.57 TRUE FALSE 199.6673475 208.7483125 175.0135104 199.4233612 421.6841893 296.7357552 320.3982692 127.3740911 272.3147326 156.5089261 1.275756933 1.333778959 1.118233412 1.274198003 2.694313991 1.895966975 2.047156524 0.813845538 1.739931002 1 7.29010113 -6.569532846 24.9999994 1.740869225 1.242450376 0.160915826 0.495990448 214.4404896 114908.5314 0.151130023 0.195108083 2.69E-07 6.569532846 -0.498418849 SS(ph)SPAPADIAQTVQEDLR ddPTM_K562_Paclitaxel_30min_R1 2 SSSPAPADIAQTVQEDLR 18 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 1 S(0.001)S(0.499)S(0.499)PAPADIAQTVQEDLR;S(0.008)S(0.496)S(0.496)PAPADIAQTVQEDLR 263.07 2.51E-96 16715400000 9682.9 12774 12583.3 12432.8 9388.6 9017.1 8932.3 11133.9 8192.4 13599.3 TRUE FALSE 9818.490474 14168.70852 9406.490287 11635.41586 10667.48627 10616.15608 10627.1573 10188.0057 8979.316625 10827.7552 0.906789108 1.308554568 0.868738729 1.074591699 0.985198324 0.980457711 0.981473732 0.940915778 0.829287 1 13.40244655 -7.117652992 0.694074793 0.921367392 1.067391933 0.125241523 0.117834169 1.356092126 1.450835385 0.079748178 0.095033434 7.63E-08 7.117652992 0.146024541 SS(ph)SPELVTHLK ddPTM_K562_Paclitaxel_30min_R1 1 SSSPELVTHLK 11 0 E9PNR6;H0YE29;Q07960 E9PNR6 ARHGAP1 Rho GTPase-activating protein 1 1 S(0.123)S(0.534)S(0.343)PELVTHLK 147.73 0.000236 22103000 5590.4 4743.9 9529.7 6418.5 5118.2 3792.7 4054.2 6260.1 3110.5 8100.5 TRUE FALSE 5668.682848 5261.855045 7123.809373 6006.846138 5815.385492 4465.282093 4823.463286 5728.265431 3409.277423 6449.613654 0.878918204 0.815840348 1.10453273 0.931349762 0.901664162 0.692333267 0.747868562 0.888156367 0.528601806 1 12.65499703 -7.122195112 5.319055295 0.763541034 0.934300811 0.253068689 0.133500436 0.31000349 12.21445982 0.042981814 0.043180584 7.55E-08 7.122195112 0.170759777 SS(ph)SPTQYGLTK ddPTM_K562_Paclitaxel_30min_R1 1 SSSPTQYGLTK 11 0 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 S(0.001)S(0.499)S(0.499)PTQYGLTK 161.25 0.00072535 197870000 4673.4 3510.4 7571.3 5226.3 3672.7 3239 3500.5 5319.4 4062.2 5778.1 TRUE FALSE 4738.842019 3893.677343 5659.831674 4891.10851 4172.983919 3813.391172 4164.701601 4867.483767 4452.39246 4600.520048 1.030066594 0.846355912 1.230259104 1.063164264 0.90706787 0.82890437 0.905267569 1.058029031 0.967801991 1 12.16758124 -4.922775033 20.4308239 0.979107794 2.957925899 0.01833816 0.113031676 2961.843251 829521.6941 0.028901947 15744.05878 1.19E-05 4.922775033 1.978818105 SS(ph)SPVGLAK ddPTM_K562_Paclitaxel_30min_R1 1 SSSPVGLAK 9 0 B1AKL4;Q9NRA8-2;Q9NRA8;Q9NRA8-3 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 S(0.047)S(0.477)S(0.477)PVGLAK 115.23 0.0040911 100160000 7387.2 5760.3 11813 7954.5 5875.2 5641.7 5235.2 7494.9 6967.6 9398.7 TRUE FALSE 7490.643591 6389.229034 8830.662049 7444.333973 6675.501708 6642.176282 6228.55187 6858.161463 7636.869112 7483.239781 1.000989386 0.8538052 1.180058679 0.994800941 0.892060378 0.887607036 0.832333595 0.916469559 1.020529789 1 12.86944729 -6.693609304 6.406823134 0.914294461 1.009976685 0.164731302 0.089482524 0.355948763 25.92128164 0.027126179 0.034923497 2.02E-07 6.693609304 0.095682224 SS(ph)SPVQVEEEPVR ddPTM_K562_Paclitaxel_30min_R1 1 SSSPVQVEEEPVR 13 0 Q8IZ21-3;Q8IZ21;Q8IZ21-2;A0A0J9YVR0 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 S(0.172)S(0.615)S(0.214)PVQVEEEPVR 100.73 0.0082163 14066000 1104.2 1131 1774.6 1473 1080 1187.4 868.42 1326.2 1061.4 1081.7 TRUE FALSE 1119.662207 1254.486405 1326.580282 1378.528373 1227.114285 1397.968718 1033.198162 1213.531032 1163.352212 861.2489462 1.300044792 1.45658977 1.540298293 1.600615454 1.424807879 1.623187725 1.199651002 1.409036304 1.350773452 1 9.750286502 -9.521378594 0.551618212 0.982985897 1.484051427 0.576088594 0.117429063 1.356593749 0.730358919 0.176652935 0.055785628 3.01E-10 9.521378594 0.50106553 SS(ph)SSFTPFIDPR ddPTM_K562_Paclitaxel_30min_R1 1 SSSSFTPFIDPR 12 0 C9J840;A0A0D9SG62;G5E948;A0A0D9SEY1;O95819-2;O95819-6;O95819-3;E7EX83;H7C0P6;E7ENQ1;G3XAA2;H7C360;E7EN19;O95819-4;O95819;O95819-5 C9J840 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 S(0.396)S(0.588)S(0.016)SFTPFIDPR 124.42 0.0017276 4178900 991.95 1058.1 1310.2 1166.7 1076.6 971.78 1002.5 992.9 715.96 1203.9 TRUE FALSE 1005.84036 1173.626936 979.4238057 1091.873084 1223.251147 1144.111539 1192.719142 908.5469475 784.731157 958.5445192 1.049341309 1.224384379 1.021782281 1.139094807 1.276154756 1.193592489 1.244302291 0.947840115 0.818669495 1 9.904701629 -8.3651296 5.37633434 0.903041565 1.164955816 0.622543438 0.086423389 0.146084076 6.16633231 0.049456832 0.023003663 4.31E-09 8.3651296 0.261914251 SS(ph)TPPGESYFGVSSLQLK ddPTM_K562_Paclitaxel_30min_R1 1 SSTPPGESYFGVSSLQLK 18 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.091)S(0.713)T(0.196)PPGESYFGVSSLQLK 190.25 6.30E-13 41643000 3953.4 3368.8 6360.8 4488.2 2955.5 3150.8 3422.5 5149.2 4591.6 6236.5 TRUE FALSE 4008.759797 3736.616977 4754.937371 4200.34694 3358.089137 3709.550141 4071.901508 4711.74332 5032.643696 4965.497877 0.80732283 0.752516076 0.957595288 0.845906502 0.676284477 0.747065095 0.820038918 0.948896452 1.013522475 1 12.27772266 -8.337619764 2.857140816 1.002344625 0.798346107 0.612738062 0.06905336 0.208437207 3.276238804 0.050238625 0.021030287 4.60E-09 8.337619764 -0.203998518 SS(ph)TPSSPT(ph)GTSSSDSGGHHIGWGER ddPTM_K562_Paclitaxel_30min_R1 1 SSTPSSPTGTSSSDSGGHHIGWGER 25 0 P46019 P46019 PHKA2 "Phosphorylase b kinase regulatory subunit alpha, liver isoform" 2 S(0.374)S(0.414)T(0.172)PS(0.12)S(0.12)PT(0.647)GT(0.125)S(0.022)S(0.005)S(0.002)DSGGHHIGWGER 89.396 0.00024029 15440000 661.57 641.7 819.96 792.75 637.07 670.75 454.85 580.92 539.69 695.92 TRUE FALSE 670.8340211 711.7629761 612.9509569 741.9065632 723.8497197 789.6980947 541.155413 531.56722 591.5296359 554.091122 1.2106926 1.28455943 1.106227717 1.33896129 1.306373069 1.425213405 0.976654185 0.959349823 1.067567431 1 9.113979441 -7.778967561 24.99999881 0.997505228 1.275100183 0.733752844 0.081946045 133.0909976 189822.5218 0.035526471 0.024012611 1.66E-08 7.778967561 0.277594955 SSAPADSERGPKPEPPGSGS(ph)PAPPR ddPTM_K562_Paclitaxel_30min_R1 2 SSAPADSERGPKPEPPGSGSPAPPR 25 2 Q9UKJ3-2;Q9UKJ3 Q9UKJ3-2 GPATCH8 G patch domain-containing protein 8 1 SSAPADSERGPKPEPPGS(0.38)GS(0.62)PAPPR;SSAPADSERGPKPEPPGS(0.191)GS(0.809)PAPPR 90.882 0.00074216 40405000 3902.1 3017.3 7052.9 3851 3369.9 2869.7 2313.33 3877.4 4276.2 4742.5 TRUE FALSE 3956.741439 3346.739018 5272.308166 3604.014096 3828.937433 3378.601002 2752.272291 3547.990668 4686.948117 3775.975897 1.047872536 0.886324253 1.396276965 0.954458978 1.01402592 0.894762333 0.728890323 0.939622171 1.241254776 1 11.88263384 -6.43621541 24.9999868 0.953931164 1.102373454 0.128829297 0.16693255 159.1035783 45893.58876 0.048206655 0.071502014 3.66E-07 6.43621541 0.14844229 SSAS(ph)APDVDDPEAFPALA ddPTM_K562_Paclitaxel_30min_R1 1 SSASAPDVDDPEAFPALA 18 0 Q8NC51-4;Q8NC51-3;Q8NC51-2;Q8NC51 Q8NC51-4 SERBP1 Plasminogen activator inhibitor 1 RNA-binding protein 1 S(0.013)S(0.013)AS(0.974)APDVDDPEAFPALA 126.48 3.72E-06 2528600 983.46 879.83 1161.4 853.15 575.24 724.58 488.28 811.99 692.65 1071.6 TRUE FALSE 997.2314742 975.8928148 868.190206 798.4327776 653.5974269 853.0740894 580.928581 743.0063812 759.1821273 853.2073318 1.168803217 1.143793283 1.017560649 0.93580159 0.766047598 0.999843834 0.680876218 0.870839189 0.889797941 1 9.736752553 -6.04919684 1.617123304 0.858162343 1.173243667 0.602689657 0.091617991 0.254047532 1.263713794 0.02707221 0.077781398 8.93E-07 6.04919684 0.315081324 SSATSGDIWPGLSAYDNS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 SSATSGDIWPGLSAYDNSPR 20 0 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLSAYDNS(1)PR;SSATSGDIWPGLS(0.432)AY(0.075)DNS(0.493)PR;SSATSGDIWPGLS(0.01)AYDNS(0.99)PR 218.88 3.32E-30 286866000 8435.5 8697.8 11317.7 10491.9 8864.9 9174.8 9476.7 9800.8 5605.7 12719.2 TRUE FALSE 8553.623026 9647.455218 8460.406659 9818.996494 10072.44946 10801.82196 11274.85435 8968.160865 6144.152532 10127.02006 0.84463376 0.952645019 0.835429041 0.969583988 0.994611387 1.066633807 1.113343737 0.885567602 0.606708834 1 13.30592209 -12.54506139 2.354170278 2.341395361 0.930155485 0.025653829 0.134644756 10300574.59 3921950.36 78461604.74 0.036340773 2.85E-13 12.54506139 -1.411239876 SSAYGDATAEGHPAGPGSVSSSTGAIS(ph)TTTGHQEGDGSEGEGEGETEGDVHTSNR ddPTM_K562_Paclitaxel_30min_R1 1 SSAYGDATAEGHPAGPGSVSSSTGAISTTTGHQEGDGSEGEGEGETEGDVHTSNR 55 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 SSAYGDATAEGHPAGPGSVS(0.005)S(0.005)S(0.005)T(0.005)GAIS(0.195)T(0.195)T(0.195)T(0.195)GHQEGDGS(0.195)EGEGEGET(0.001)EGDVHTSNR 72.77 1.12E-15 72595000 228.75 218.57 383.68 343.43 163.98 217.01 197.18 191.9 183.56 178.06 TRUE FALSE 231.9532058 242.4342118 286.8152387 321.4039369 186.3168522 255.4936765 234.5938757 175.5968972 201.1917582 141.7712743 1.636108633 1.710037615 2.023084297 2.267059661 1.314207361 1.802154053 1.654734902 1.238592925 1.419129222 1 7.147421433 -8.425133098 0.668296571 1.025677806 1.855562911 0.542906142 0.242434152 0.545769875 0.504639056 0.23889047 0.114973107 3.76E-09 8.425133098 0.829885105 SSDEENGPPS(ph)SPDLDRIAASMR ddPTM_K562_Paclitaxel_30min_R1 1 SSDEENGPPSSPDLDRIAASMR 22 1 Q96B36-3;Q96B36;Q96B36-2 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 1 S(0.002)S(0.002)DEENGPPS(0.498)S(0.498)PDLDRIAASMR 66.613 0.006444 15292000 245.13 267.22 473.77 475.98 361.62 350.38 277.09 402.2 761.27 384.58 TRUE FALSE 248.5625763 296.3959833 354.160904 445.4527732 410.8787663 412.5149734 329.666381 368.0305995 834.3933849 306.2023849 0.811759113 0.967974117 1.156623598 1.454765852 1.34185358 1.347197128 1.076629044 1.201919442 2.724973501 1 8.258341709 -4.879358837 0.4333724 1.530209989 4.48E-15 0.208403266 0.451611231 12.02986185 1.37739841 0.326910847 10.15242665 1.32E-05 4.879358837 -1.530209989 SSDEENGPPSS(ph)PDLDR ddPTM_K562_Paclitaxel_30min_R1 2 SSDEENGPPSSPDLDR 16 0 Q96B36-3;Q96B36;Q96B36-2 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 1 SSDEENGPPS(0.022)S(0.978)PDLDR;SSDEENGPPS(0.001)S(0.999)PDLDR 281.61 3.95E-132 81927000 7033.2 6026.3 9459 7516.8 6825.7 6723.7 6116.7 7271.7 5483.4 8252.2 TRUE FALSE 7131.686499 6684.271814 7070.958463 7034.706092 7755.4759 7916.05379 7277.311894 6653.923696 6010.10507 6570.39711 1.085427011 1.01733148 1.076184338 1.070666807 1.180366387 1.204805989 1.107590876 1.012712563 0.914724783 1 12.68176485 -8.413904145 3.519160483 0.958251993 1.106626964 0.557597034 0.054450952 0.206049042 4.625998626 0.04004163 0.016679665 3.86E-09 8.413904145 0.148374971 SSDQPLTVPVS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 4 SSDQPLTVPVSPK 13 0 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 SSDQPLT(0.001)VPVS(0.999)PK;SSDQPLT(0.008)VPVS(0.992)PK;SSDQPLTVPVS(1)PK;SSDQPLTVPVS(1)PK 183.76 0.00011802 273884000 13778.7 11055.3 21412.1 15022.6 9552.7 8785.6 8849.3 12338.7 11789.4 14865 TRUE FALSE 13971.64431 12262.35504 16006.35053 14059.11767 10853.93947 10343.6028 10528.40848 11290.45042 12921.82455 11835.50484 1.180485708 1.03606523 1.352401165 1.187876467 0.917066033 0.873946903 0.889561419 0.953947514 1.091784822 1 13.53083362 -6.757188566 24.9677354 0.944818783 1.189925204 0.611472195 0.091508673 72.52195214 425964.2724 0.028454094 0.035429839 1.75E-07 6.757188566 0.245106421 SSDVHSSGSSDAHMDASGPS(ph)DSDMPSR ddPTM_K562_Paclitaxel_30min_R1 3 SSDVHSSGSSDAHMDASGPSDSDMPSR 27 0 C9J5L1;E7EW00;H0Y8D9;E7ET15;O15042-2;O15042 C9J5L1 U2SURP U2 snRNP-associated SURP motif-containing protein 1 SSDVHSSGSSDAHMDAS(0.305)GPS(0.54)DS(0.138)DMPS(0.017)R;SSDVHS(0.001)S(0.004)GS(0.001)SDAHMDAS(0.032)GPS(0.457)DS(0.457)DMPS(0.047)R;SSDVHSSGSSDAHMDAS(0.071)GPS(0.671)DS(0.257)DMPS(0.002)R 114.59 7.24E-12 26065300 4952.58 4319.69 5450.32 5262.07 4341.75 3893.36 4460.35 4830.48 5486.93 5368.12 TRUE FALSE 5021.9314 4791.328362 4074.319307 4924.584382 4933.169856 4583.792731 5306.678128 4420.100573 6013.974143 4274.094197 1.174969752 1.121016089 0.953259128 1.152193694 1.154202418 1.072459454 1.24159129 1.034160776 1.407075714 1 12.06140299 -7.740836088 24.9827367 1.17355372 1.102953315 0.068037036 0.119421472 657.5019759 797261.2306 0.043349836 0.033542208 1.82E-08 7.740836088 -0.070600405 SSDVSPPLGQHETGGS(ph)PSKQQMR ddPTM_K562_Paclitaxel_30min_R1 2 SSDVSPPLGQHETGGSPSKQQMR 23 1 Q96PY6-4;Q96PY6-2;Q96PY6-6;Q96PY6;Q96PY6-3 Q96PY6-4 NEK1 Serine/threonine-protein kinase Nek1 1 SSDVSPPLGQHET(0.215)GGS(0.77)PS(0.016)KQQMR;SSDVSPPLGQHETGGS(0.999)PS(0.001)KQQMR 154.33 1.81E-18 24523000 1657.44 1407.66 3137 2052.04 1352.76 1262.05 1204 1549.05 2033.55 2423.9 TRUE FALSE 1680.649274 1561.353079 2345.025552 1920.431339 1537.028814 1485.856847 1432.452715 1417.448534 2228.881564 1929.907849 0.870844312 0.809029861 1.215097163 0.995089656 0.796426013 0.769910775 0.742238918 0.73446436 1.154916057 1 10.91431625 -6.754006507 24.98611918 0.842024119 0.978165025 0.086124211 0.157547196 352.7161 1185673.685 0.04798449 0.060697765 1.76E-07 6.754006507 0.136140906 SSECLDGTLTPSDGQS(ph)MERAESPTPGMAQGMEPGAGQEGAMFVHAR ddPTM_K562_Paclitaxel_30min_R1 1 SSECLDGTLTPSDGQSMERAESPTPGMAQGMEPGAGQEGAMFVHAR 46 1 A0A0A0MSQ9;Q86VX9-5;Q86VX9 A0A0A0MSQ9 MON1A Vacuolar fusion protein MON1 homolog A 1 SSECLDGTLTPS(0.01)DGQS(0.33)MERAES(0.33)PT(0.33)PGMAQGMEPGAGQEGAMFVHAR 105.31 1.22E-29 15596000 461.26 241.59 558.58 283.39 239.63 375.23 356.28 251.68 484.67 319.29 TRUE FALSE 467.7190631 267.9676132 417.5595706 265.2146338 272.271663 441.771772 423.8822701 230.2982131 531.2247191 254.2185227 1.839830781 1.054083748 1.642522213 1.043254563 1.07101426 1.737763902 1.667393334 0.905906504 2.089638132 1 7.989925341 -11.98120721 2.995197375 0.631197402 1.419887083 0.104115612 0.38708436 94993396.27 87790920.53 242745766.5 0.091514219 1.04E-12 11.98120721 0.788689681 SSEEVDGQHPAQEEVPES(ph)PQTSGPEAENR ddPTM_K562_Paclitaxel_30min_R1 1 SSEEVDGQHPAQEEVPESPQTSGPEAENR 29 0 Q6JBY9;B7ZKW8 Q6JBY9 RCSD1 CapZ-interacting protein 1 SSEEVDGQHPAQEEVPES(0.835)PQT(0.073)S(0.092)GPEAENR 65.248 0.00057081 60513000 2278.3 2330.4 3237.3 2731.3 2549.9 2519.7 2270.1 3082.6 2445.2 3278.7 TRUE FALSE 2310.203229 2584.840953 2420.003577 2556.126643 2897.23955 2966.533417 2700.839624 2820.713889 2680.072385 2610.49914 0.884966095 0.990171157 0.927027149 0.979171609 1.10984122 1.136385518 1.034606594 1.080526649 1.026651319 1 11.35010997 -6.604611747 4.890681762 1.070331492 0.941444574 0.637187523 0.044783813 0.129215025 5.496740238 0.013296695 0.017405953 2.49E-07 6.604611747 -0.128886917 SSEGGVGVGPGGGDEPPT(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 2 SSEGGVGVGPGGGDEPPTSPR 21 0 Q9Y4H2 Q9Y4H2 IRS2 Insulin receptor substrate 2 1 SSEGGVGVGPGGGDEPPT(0.696)S(0.304)PR;SSEGGVGVGPGGGDEPPT(0.987)S(0.013)PR 189.56 4.86E-23 23662400 4487.5 4180.7 6473.9 5723.3 5104.4 4429.3 4320.7 4903.5 3815.7 5767.4 TRUE FALSE 4550.338845 4637.162964 4839.483877 5356.233155 5799.705698 5214.774165 5140.530269 4486.917068 4182.215034 4592.000714 0.990927295 1.009834983 1.053894409 1.166426899 1.263001916 1.135621375 1.119453282 0.977115934 0.910760972 1 12.16490715 -8.313813841 4.742924527 0.953516923 1.109650466 0.421520329 0.076733118 0.233236073 11.52965573 0.050041247 0.0235006 4.85E-09 8.313813841 0.156133543 SSEPVKETVQTTQS(ph)PTPVEK ddPTM_K562_Paclitaxel_30min_R1 1 SSEPVKETVQTTQSPTPVEK 20 1 A0A0A0MT33;Q9UPN6;Q9UPN6-2 A0A0A0MT33 SCAF8 Protein SCAF8 1 SSEPVKETVQTTQS(0.93)PT(0.07)PVEK 174.68 1.62E-14 37051000 1523.7 1491.1 4131.7 2041.2 1332.1 1119.3 1305.4 2326.7 1092.6 2918.7 TRUE FALSE 1545.036501 1653.903341 3088.601235 1910.286568 1513.554573 1317.792139 1553.092835 2129.032312 1197.549112 2323.867338 0.664855724 0.711702993 1.329078121 0.822029096 0.65130851 0.567068575 0.668322503 0.916159144 0.515325936 1 11.182312 -6.526670891 23.24950069 0.708156341 0.914976648 0.125155717 0.215802295 86.19687998 528459.5359 0.064241447 0.083425129 2.97E-07 6.526670891 0.206820307 SSEPVREDSSGMHHENQTYPPYS(ph)PQAQPQPIHR ddPTM_K562_Paclitaxel_30min_R1 3 SSEPVREDSSGMHHENQTYPPYSPQAQPQPIHR 33 1 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2 G3V1L9 TJP1 Tight junction protein ZO-1 1 S(0.001)S(0.001)EPVREDS(0.002)S(0.002)GMHHENQT(0.007)Y(0.007)PPY(0.09)S(0.89)PQAQPQPIHR;SSEPVREDSSGMHHENQTY(0.001)PPY(0.456)S(0.543)PQAQPQPIHR;SSEPVREDSSGMHHENQT(0.043)Y(0.036)PPY(0.315)S(0.606)PQAQPQPIHR 87.235 2.80E-08 54560000 2269.77 2548.93 3359.87 2887.62 1873.2 2167.34 2008.99 2838.98 2788.89 3255.36 TRUE FALSE 2301.553783 2827.230797 2511.629264 2702.420978 2128.361554 2551.687318 2390.185365 2597.790929 3056.775346 2591.915845 0.887973962 1.090788037 0.969024233 1.042634537 0.821153803 0.984479231 0.922169356 1.002266695 1.179349766 1 11.33980316 -8.539081709 22.13482322 1.090053161 0.963828041 0.282843959 0.081677082 80.58420451 110076.6874 0.052846248 0.019998233 2.89E-09 8.539081709 -0.126225119 SSETGAFRVPS(ph)PGMEEAGCSR ddPTM_K562_Paclitaxel_30min_R1 1 SSETGAFRVPSPGMEEAGCSR 21 1 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 S(0.009)S(0.009)ET(0.007)GAFRVPS(0.937)PGMEEAGCS(0.038)R 62.648 0.014072 352900000 864.93 532.27 732.94 683.37 570.18 722.28 602.01 710.52 811.29 682.34 TRUE FALSE 877.0416885 590.3850386 547.9002321 639.5417069 647.8481692 850.3662167 716.2382548 650.1568911 889.2180294 543.2787335 1.614349384 1.086707434 1.008506681 1.177188922 1.192478427 1.565248489 1.3183624 1.196728035 1.636762079 1 9.085548764 -7.110876704 21.61070868 1.356902855 1.194936057 0.070058344 0.223372238 20.70256933 4002.243352 0.07174722 0.071747326 7.75E-08 7.110876704 -0.161966798 SSFDWLTGSSTDPLVDHT(ph)SPSSDSLLFAHK ddPTM_K562_Paclitaxel_30min_R1 1 SSFDWLTGSSTDPLVDHTSPSSDSLLFAHK 30 0 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 1 SSFDWLTGSSTDPLVDHT(0.359)S(0.359)PS(0.094)S(0.094)DS(0.094)LLFAHK 57.803 0.002438 9013500 2755 2825.2 3183.4 2511.4 2137.2 1954.7 3471.8 5987.2 3768.4 6927.8 TRUE FALSE 2793.5785 3133.66489 2379.711298 2350.330045 2428.322823 2301.3386 4130.555926 5478.549989 4130.371658 5515.910557 0.506458267 0.568113797 0.431426738 0.426100101 0.440239703 0.417218259 0.748843891 0.993226763 0.748810485 1 12.42938335 -7.915010909 3.817885688 0.900375587 0.465697358 0.871629219 0.078367755 0.075239307 2.121354501 0.03495531 0.022475653 1.22E-08 7.915010909 -0.434678229 SSFDWLTGSSTDPLVDHT(ph)SPSSDSLLFAHKR ddPTM_K562_Paclitaxel_30min_R1 1 SSFDWLTGSSTDPLVDHTSPSSDSLLFAHKR 31 1 P78527-2;P78527 P78527-2 PRKDC DNA-dependent protein kinase catalytic subunit 1 SSFDWLTGS(0.001)S(0.003)T(0.002)DPLVDHT(0.469)S(0.469)PS(0.025)S(0.025)DS(0.006)LLFAHKR 52.824 0.0031325 15763000 1393 1557.1 1525.8 1289.6 950.96 892.23 1754.9 2754.1 2300.9 3493.1 TRUE FALSE 1412.506298 1727.109444 1140.592919 1206.890828 1080.496852 1050.454463 2087.883114 2520.122014 2521.911726 2781.204303 0.507875778 0.620993374 0.410107563 0.433945405 0.388499633 0.377697698 0.750711881 0.906126174 0.906769676 1 11.44149401 -7.955960924 3.304350337 0.922755558 0.458213929 0.899635015 0.072801756 0.080535413 1.807520706 0.038748605 0.02367579 1.11E-08 7.955960924 -0.464541629 SSFLSS(ph)PER ddPTM_K562_Paclitaxel_30min_R1 1 SSFLSSPER 9 0 Q4AC94 Q4AC94 C2CD3 C2 domain-containing protein 3 1 SSFLS(0.096)S(0.904)PER 91.265 0.016116 10026000 4380.7 4404.2 4113.9 4296.5 4216 4189.1 4206.8 4532 3300.2 4617.8 TRUE FALSE 4442.043316 4885.06545 3075.295065 4020.94172 4790.290577 4931.978067 5005.018339 4146.978312 3617.198956 3676.689825 1.208163736 1.328658571 0.836430379 1.093630932 1.302881343 1.341418042 1.361283812 1.127910841 0.983819448 1 11.84419176 -8.62174504 4.261934579 0.994756441 1.206997531 0.255534319 0.147276465 0.345671483 11.03624302 0.122600738 0.041874486 2.39E-09 8.62174504 0.21224109 SSFVSDNSLNRS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 SSFVSDNSLNRSPR 14 1 Q6UB98-2;Q6UB98 Q6UB98-2 ANKRD12 Ankyrin repeat domain-containing protein 12 1 SSFVSDNSLNRS(1)PR;SSFVSDNS(0.003)LNRS(0.997)PR 194.32 6.98E-07 75607000 4577.4 3742.8 5129.9 4773.2 4649 4109.4 4133.3 4721.6 3873 5543.7 TRUE FALSE 4641.497722 4151.451561 3834.793299 4467.068316 5282.272508 4838.144391 4917.572098 4320.470609 4245.018955 4413.890897 1.051566029 0.940542405 0.868801107 1.012047742 1.19673835 1.096117803 1.114112744 0.978834935 0.961740798 1 12.10783525 -4.865110421 19.11689543 1.022516728 12.06540439 0.010318753 0.089848105 3900.343465 550091.1123 0.024479926 9157.374824 1.36E-05 4.865110421 11.04288766 SSGDPEQIKEDS(ph)LSEESADAR ddPTM_K562_Paclitaxel_30min_R1 1 SSGDPEQIKEDSLSEESADAR 21 1 Q9BVS4-2;Q9BVS4 Q9BVS4-2 RIOK2 Serine/threonine-protein kinase RIO2 1 SSGDPEQIKEDS(0.637)LS(0.174)EES(0.189)ADAR 59.182 0.019199 26643000 1319.7 1381.3 2481.6 1341.3 1015.7 856.96 1028.1 1399.6 1518.7 1796.3 TRUE FALSE 1338.179872 1532.115005 1855.089388 1255.275021 1154.055536 1008.929824 1223.176608 1280.695244 1664.577921 1430.213074 0.935650705 1.071249475 1.297072039 0.877683923 0.806911611 0.705440219 0.855240824 0.895457654 1.163867085 1 10.48201438 -6.313385207 24.50173402 0.882368801 1.098316732 0.293655799 0.140606418 317.5692704 149789.7937 0.04138473 0.061383545 4.86E-07 6.313385207 0.215947931 SSGEIVYCGQVFEKS(ph)PLR ddPTM_K562_Paclitaxel_30min_R1 3 SSGEIVYCGQVFEKSPLR 18 1 M0R0P7;M0R3D6;M0R1A7;M0R117;Q02543 M0R0P7 RPL18A 60S ribosomal protein L18a 1 SSGEIVYCGQVFEKS(1)PLR;SSGEIVYCGQVFEKS(1)PLR;SSGEIVYCGQVFEKS(1)PLR 120.41 5.41E-05 244457000 8799.6 8589 15482.9 10427.3 7792.2 7826.7 7525.6 11148 6652.5 14779.6 TRUE FALSE 8922.821549 9526.776066 11574.0504 9758.539649 8853.629563 9214.655353 8953.543314 10200.90782 7291.502349 11767.50941 0.758259139 0.809583042 0.983559902 0.829278253 0.752379221 0.783059102 0.760869867 0.866870589 0.619630042 1 13.52252139 -6.530521802 23.58579688 0.788221951 0.856385607 0.046102684 0.104647437 235.3212933 726172.7415 0.029527519 0.038214501 2.95E-07 6.530521802 0.068163656 SSGGS(ph)YRDSYDSYATHNE ddPTM_K562_Paclitaxel_30min_R1 1 SSGGSYRDSYDSYATHNE 18 1 Q14011 Q14011 CIRBP Cold-inducible RNA-binding protein 1 S(0.013)S(0.013)GGS(0.503)Y(0.001)RDS(0.234)YDS(0.234)YAT(0.002)HNE 99.273 0.0032399 15128000 676.28 736.35 708.46 989.22 943.74 786.21 666.29 957.49 708 686.99 TRUE FALSE 685.7500065 816.7471832 529.6005109 925.7758568 1072.293366 925.6333046 792.7150492 876.145248 776.0065634 546.9810609 1.253699727 1.493190974 0.968224585 1.692519034 1.960384815 1.692258418 1.449255022 1.601783518 1.418708286 1 9.095347071 -6.285068336 24.99466298 1.589517053 1.263853613 0.207084015 0.263691738 1077.798798 1140090.539 0.073464574 0.109029473 5.19E-07 6.285068336 -0.32566344 SSGGSYRDS(ph)YDSYATHNE ddPTM_K562_Paclitaxel_30min_R1 1 SSGGSYRDSYDSYATHNE 18 1 Q14011 Q14011 CIRBP Cold-inducible RNA-binding protein 1 SSGGSYRDS(0.918)Y(0.03)DS(0.032)Y(0.021)ATHNE 118.05 0.00050726 7632200 744.85 883.51 1132.5 947.73 734.21 755.44 810.94 730.77 1219.4 1225.3 TRUE FALSE 755.2801981 979.9746096 846.5863684 886.9468397 834.2218323 889.4066771 964.8116316 668.6865272 1336.528818 975.5831874 0.774183286 1.00450133 0.86777466 0.909145269 0.855100665 0.911666671 0.988958855 0.685422356 1.369979347 1 9.930121086 -8.763038758 25 1.184989621 0.884246896 0.508959177 0.121657774 32.19610263 503182.89 0.089838471 0.02791656 1.73E-09 8.763038758 -0.300742726 SSGHS(ph)SSELS(ph)PDAVEK ddPTM_K562_Paclitaxel_30min_R1 1 SSGHSSSELSPDAVEK 16 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.172)S(0.053)GHS(0.515)S(0.19)S(0.071)ELS(1)PDAVEK 94.234 0.01581 25647000 4938.9 4553.2 8495.6 5374.1 4394.9 3811.1 2814.3 4884.6 4505.5 6038.9 TRUE FALSE 5008.059838 5050.333774 6350.780708 5029.42928 4993.559786 4486.945075 3348.298733 4469.622741 4938.273406 4808.168865 1.041573201 1.050365309 1.320831461 1.046017605 1.03855749 0.933192074 0.696377109 0.929589386 1.027059062 1 12.23127185 -7.022932957 2.145984404 0.899188677 1.126884732 0.410686971 0.111890988 0.306541134 2.826637164 0.042573023 0.045897579 9.49E-08 7.022932957 0.227696055 SSGHS(ph)SSELSPDAVEK ddPTM_K562_Paclitaxel_30min_R1 2 SSGHSSSELSPDAVEK 16 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.001)S(0.001)GHS(0.698)S(0.056)S(0.168)ELS(0.076)PDAVEK;S(0.032)S(0.032)GHS(0.382)S(0.382)S(0.172)ELSPDAVEK 109.77 0.0015958 12432000 3856.7 3769.8 6610.5 4264.5 2938.8 2739.4 2607.9 4214.9 3547.2 4898.1 TRUE FALSE 3910.705699 4181.399513 4941.597517 3990.994057 3339.114314 3225.194127 3102.735411 3856.817936 3887.924409 3899.864531 1.002779883 1.072190964 1.267120301 1.023367357 0.856212899 0.827001579 0.795600818 0.988962028 0.996938324 1 11.92920829 -6.558489069 5.506004997 0.902051823 1.115728022 0.502233724 0.091105146 0.149118492 11.78373316 0.028728255 0.038035186 2.76E-07 6.558489069 0.213676199 SSGHSSSELS(ph)PDAVEK ddPTM_K562_Paclitaxel_30min_R1 1 SSGHSSSELSPDAVEK 16 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 SSGHSSSELS(1)PDAVEK 159.5 1.81E-07 247300000 6226.5 4745 9096 6074.1 5014.4 4342.4 3549 5942.4 4908.1 7419.8 TRUE FALSE 6313.69021 5263.075147 6799.602302 5684.534413 5697.446174 5112.46367 4222.404223 5437.556029 5379.544935 5907.640687 1.068732942 0.8908929 1.150984405 0.962234285 0.964419889 0.865398547 0.714736127 0.920427683 0.910608011 1 12.52836637 -6.987481139 2.300068489 0.868017099 1.02051891 0.324251637 0.092094199 0.34071037 3.631537289 0.032448229 0.035739963 1.03E-07 6.987481139 0.152501811 SSGKS(ph)SS(ph)GS(ph)S(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 SSGKSSSGSSK 11 1 H0YDX2;H0YDT8;Q9NPA0 H0YDX2 EMC7 ER membrane protein complex subunit 7 4 S(0.036)S(0.044)GKS(0.904)S(0.073)S(0.943)GS(1)S(1)K 84.718 0.012427 0 1281.2 1201.6 1455.7 1569.1 1297.7 1406.7 1527.6 1476.5 1230.2 2029.3 TRUE FALSE 1299.140753 1332.794752 1088.190531 1468.464949 1474.46871 1656.158494 1817.454125 1351.062109 1348.366207 1615.727546 0.804059296 0.824888302 0.67349878 0.908856789 0.912572614 1.02502337 1.124851854 0.836194266 0.834525728 1 10.65796823 -6.450237631 5.106815625 0.955837278 0.773352538 0.468946117 0.089437007 0.213156208 10.26023373 0.027666281 0.040992194 3.55E-07 6.450237631 -0.182484741 SSGNS(ph)PTPVSR ddPTM_K562_Paclitaxel_30min_R1 1 SSGNSPTPVSR 11 0 H0YBT1;O95429-2;O95429 H0YBT1 BAG4 BAG family molecular chaperone regulator 4 1 SSGNS(0.956)PT(0.043)PVS(0.001)R 103.13 0.0079006 3969500 1751.9 1350.4 1928.5 1970.1 1693.6 1641.7 1607.7 1671.2 1367.5 2271 TRUE FALSE 1776.432005 1497.841239 1441.626324 1843.746604 1924.296993 1932.832444 1912.752682 1529.221129 1498.854485 1808.168953 0.982448018 0.828374603 0.797285188 1.019676065 1.064224109 1.068944603 1.057839578 0.845729115 0.828934974 1 10.82031377 -4.910406893 20.27394545 0.946986649 3.306191938 0.010840136 0.104723223 4254.788052 1075358.674 0.028331413 53951.10456 1.23E-05 4.910406893 2.359205288 SSGNSSSSGSGSGSTSAGS(ph)SSPGAR ddPTM_K562_Paclitaxel_30min_R1 1 SSGNSSSSGSGSGSTSAGSSSPGAR 25 0 E5RHJ2;E5RG56;Q12797-7;Q12797-6;Q12797-11;Q12797-2;Q12797 E5RHJ2 ASPH Aspartyl/asparaginyl beta-hydroxylase 1 SSGNSSSSGSGSGST(0.001)S(0.002)AGS(0.377)S(0.377)S(0.242)PGAR 61.524 0.0066597 556070 122.57 64.228 182.61 0 103.33 0 0 0 129.72 165.81 TRUE FALSE 124.2863582 71.24063025 136.507847 0 117.4052954 0 0 0 142.1801856 132.017831 0.941436147 0.539628849 1.034010679 0 0.889313925 0 0 0 1.076977137 1 7.04458899 -6.249980959 24.96958717 0.366174455 0.808485575 0.152808427 0.431022811 1273.674676 2775520.625 0.114121432 0.195497173 5.62E-07 6.249980959 0.44231112 SSGNSSSSGSGSGSTSAGS(ph)SSPGARR ddPTM_K562_Paclitaxel_30min_R1 1 SSGNSSSSGSGSGSTSAGSSSPGARR 26 1 E5RHJ2;E5RG56;Q12797-7;Q12797-6;Q12797-11;Q12797-2;Q12797 E5RHJ2 ASPH Aspartyl/asparaginyl beta-hydroxylase 1 SSGNSSSSGSGSGSTS(0.001)AGS(0.333)S(0.333)S(0.333)PGARR 64.035 0.0017083 907230 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 SSGNSSSSGSGSGSTSAGSSS(ph)PGARR ddPTM_K562_Paclitaxel_30min_R1 1 SSGNSSSSGSGSGSTSAGSSSPGARR 26 1 E5RHJ2;E5RG56;Q12797-7;Q12797-6;Q12797-11;Q12797-2;Q12797 E5RHJ2 ASPH Aspartyl/asparaginyl beta-hydroxylase 1 SSGNSSSSGSGSGSTSAGS(0.05)S(0.125)S(0.825)PGARR 87.996 4.30E-05 2089700 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 SSGRS(ph)GSMDPSGAHPSVR ddPTM_K562_Paclitaxel_30min_R1 1 SSGRSGSMDPSGAHPSVR 18 1 Q07666-3;Q07666;Q07666-2 Q07666-3 KHDRBS1 "KH domain-containing, RNA-binding, signal transduction-associated protein 1" 1 S(0.033)S(0.033)GRS(0.638)GS(0.296)MDPSGAHPSVR 87.062 0.0030307 5893500 2039.6 1572.6 2105.3 2010.9 1379.6 1435.4 1476.5 1577.8 2144 1707.7 TRUE FALSE 2068.160693 1744.301786 1573.790977 1881.929874 1567.524877 1689.948036 1756.658167 1443.756042 2349.94078 1359.669803 1.521075697 1.282886318 1.157480275 1.384108017 1.152871729 1.242910619 1.291974098 1.061843132 1.728317254 1 10.40904062 -5.27200935 4.540082332 1.254835515 1.536194772 0.149315414 0.190941834 0.332602898 17.71335284 0.043960331 0.294143504 5.35E-06 5.27200935 0.281359258 SSGS(ph)PEPSPAIAK ddPTM_K562_Paclitaxel_30min_R1 1 SSGSPEPSPAIAK 13 0 K7ELE9;Q66K64 K7ELE9 DCAF15 DDB1- and CUL4-associated factor 15 1 S(0.367)S(0.002)GS(0.608)PEPS(0.023)PAIAK 170.95 5.39E-05 49863000 3182 2649 4841.6 3253.1 2562.8 2292.2 1974.1 3530 2962.3 4083.1 TRUE FALSE 3226.557817 2938.226778 3619.2782 3044.460726 2911.896749 2698.689486 2348.67517 3230.104466 3246.842151 3250.961979 0.992493249 0.903802258 1.113294534 0.936479955 0.895703108 0.830120285 0.722455441 0.993584203 0.998732736 1 11.66665097 -6.514503095 21.45834096 0.895460373 0.998528913 0.168645778 0.093596372 104.501953 267733.3199 0.028552402 0.038888686 3.06E-07 6.514503095 0.103068539 SSGS(ph)PY(ph)GGGYGSGGGSGGYGSR ddPTM_K562_Paclitaxel_30min_R1 1 SSGSPYGGGYGSGGGSGGYGSR 22 0 P51991;H7C1J8;P51991-2 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 2 S(0.085)S(0.012)GS(0.904)PY(0.599)GGGY(0.007)GS(0.388)GGGS(0.005)GGYGSR 96.489 0.0017203 6295200 2062.3 1724.7 2783.6 2034 1578.9 1642.2 1709.3 2095.1 1915.3 2485.9 TRUE FALSE 2091.178563 1913.008579 2080.845753 1903.548344 1793.972911 1933.421112 2033.630752 1917.108178 2099.273123 1979.272215 1.056539139 0.966521211 1.051318629 0.961741558 0.906380081 0.976834362 1.027463901 0.968592477 1.060628804 1 10.95075433 -10.54619585 10.71975269 0.99999979 0.993732727 0 0.048151461 0 0 0.046827788 0.011357407 2.84E-11 10.54619585 -0.006267063 SSGS(ph)PYGGGYGS(ph)GGGSGGYGSR ddPTM_K562_Paclitaxel_30min_R1 1 SSGSPYGGGYGSGGGSGGYGSR 22 0 P51991;H7C1J8;P51991-2 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 2 S(0.005)S(0.015)GS(0.973)PY(0.007)GGGY(0.065)GS(0.907)GGGS(0.024)GGY(0.001)GS(0.001)R 76.156 0.01322 9895100 1455.1 1470.2 2164 1814.9 1846.1 1498.3 1447.2 1819.4 1746.5 2184.3 TRUE FALSE 1475.475889 1630.721408 1617.671436 1698.500437 2097.570075 1764.002468 1721.798645 1664.830614 1914.259129 1739.138461 0.848394721 0.937660482 0.930156783 0.976633244 1.206097227 1.014296738 0.990029652 0.957273185 1.100693919 1 10.76415708 -6.387251694 3.669359057 1.041510949 0.908057279 0.437861586 0.069888192 0.246402623 5.936767035 0.021124564 0.032530752 4.10E-07 6.387251694 -0.13345367 SSGS(ph)PYGGGYGSGGGSGGYGSR ddPTM_K562_Paclitaxel_30min_R1 65 SSGSPYGGGYGSGGGSGGYGSR 22 0 P51991;H7C1J8;P51991-2 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 1 SS(0.001)GS(0.998)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;S(0.036)S(0.036)GS(0.929)PYGGGYGSGGGSGGYGSR;S(0.007)S(0.007)GS(0.987)PYGGGYGSGGGSGGYGSR;SS(0.003)GS(0.997)PYGGGYGSGGGSGGYGSR;S(0.008)S(0.003)GS(0.989)PYGGGYGSGGGSGGYGSR;S(0.001)S(0.001)GS(0.998)PYGGGYGSGGGSGGYGSR;S(0.012)S(0.039)GS(0.95)PYGGGYGSGGGSGGYGSR;S(0.01)S(0.184)GS(0.806)PYGGGYGSGGGSGGYGSR;S(0.014)S(0.014)GS(0.968)PY(0.003)GGGYGSGGGSGGYGSR;SS(0.001)GS(0.998)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;S(0.33)S(0.12)GS(0.539)PY(0.01)GGGYGS(0.001)GGGSGGYGSR;S(0.039)S(0.039)GS(0.87)PY(0.052)GGGYGSGGGSGGYGSR;S(0.116)S(0.116)GS(0.767)PYGGGYGSGGGSGGYGSR;S(0.002)S(0.002)GS(0.995)PYGGGYGSGGGSGGYGSR;S(0.211)S(0.211)GS(0.575)PY(0.001)GGGY(0.002)GSGGGSGGYGSR;S(0.18)S(0.005)GS(0.812)PY(0.003)GGGYGSGGGSGGYGSR;S(0.012)S(0.057)GS(0.932)PYGGGYGSGGGSGGYGSR;S(0.01)S(0.01)GS(0.948)PY(0.031)GGGY(0.001)GS(0.001)GGGSGGYGSR;S(0.33)S(0.33)GS(0.34)PYGGGYGSGGGSGGYGSR;S(0.018)S(0.018)GS(0.813)PY(0.04)GGGY(0.014)GS(0.091)GGGS(0.002)GGY(0.003)GS(0.003)R;S(0.002)S(0.002)GS(0.995)PYGGGYGSGGGSGGYGSR;S(0.029)S(0.029)GS(0.579)PY(0.273)GGGY(0.068)GS(0.022)GGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;S(0.001)SGS(0.999)PYGGGYGSGGGSGGYGSR;S(0.002)S(0.002)GS(0.996)PYGGGYGSGGGSGGYGSR;S(0.018)S(0.015)GS(0.964)PY(0.001)GGGY(0.001)GS(0.001)GGGSGGYGSR;S(0.046)S(0.046)GS(0.903)PY(0.004)GGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;S(0.001)S(0.029)GS(0.97)PYGGGYGSGGGSGGYGSR;S(0.002)SGS(0.997)PYGGGYGSGGGSGGYGSR;S(0.013)S(0.013)GS(0.934)PY(0.039)GGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;S(0.002)S(0.002)GS(0.966)PY(0.019)GGGY(0.007)GS(0.003)GGGS(0.001)GGYGSR;S(0.008)S(0.008)GS(0.889)PY(0.093)GGGY(0.002)GSGGGSGGYGSR;S(0.013)S(0.013)GS(0.974)PYGGGYGSGGGSGGYGSR;SS(0.001)GS(0.939)PYGGGYGS(0.058)GGGS(0.002)GGYGSR;S(0.004)S(0.004)GS(0.916)PY(0.047)GGGY(0.024)GS(0.006)GGGSGGYGSR;S(0.024)S(0.036)GS(0.917)PY(0.001)GGGYGS(0.017)GGGS(0.006)GGYGSR;SS(0.002)GS(0.998)PYGGGYGSGGGSGGYGSR;S(0.004)S(0.011)GS(0.841)PY(0.143)GGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SS(0.001)GS(0.999)PYGGGYGSGGGSGGYGSR;S(0.001)S(0.003)GS(0.996)PYGGGYGSGGGSGGYGSR;SSGS(0.998)PY(0.001)GGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;S(0.004)S(0.001)GS(0.994)PY(0.001)GGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;S(0.011)S(0.037)GS(0.952)PYGGGYGSGGGSGGYGSR;S(0.001)S(0.006)GS(0.993)PYGGGYGSGGGSGGYGSR;S(0.046)S(0.01)GS(0.943)PYGGGYGSGGGSGGYGSR;S(0.009)S(0.025)GS(0.956)PY(0.007)GGGYGSGGGSGGYGS(0.002)R;S(0.004)S(0.015)GS(0.976)PY(0.005)GGGYGSGGGSGGYGSR;S(0.068)S(0.017)GS(0.481)PYGGGYGS(0.257)GGGS(0.028)GGY(0.063)GS(0.085)R;S(0.001)S(0.005)GS(0.994)PYGGGYGSGGGSGGYGSR;SS(0.001)GS(0.999)PYGGGYGSGGGSGGYGSR;S(0.001)S(0.002)GS(0.997)PYGGGYGSGGGSGGYGSR;S(0.021)S(0.012)GS(0.966)PYGGGYGSGGGSGGYGSR;SS(0.004)GS(0.996)PYGGGYGSGGGSGGYGSR;SS(0.005)GS(0.993)PY(0.002)GGGYGSGGGSGGYGSR;SSGS(1)PYGGGYGSGGGSGGYGSR;SSGS(0.566)PYGGGYGS(0.23)GGGS(0.203)GGYGSR 356.36 0 6811163670 60961.3 59436.15 78507.02 68609.49 56867.94 56287.76 54892.82 67933.55 63160.02 70456.6 TRUE FALSE 61814.94628 65925.58986 58686.95184 64209.1844 64614.31621 66269.60392 65308.44604 62162.1709 69226.82213 56097.50625 1.101919683 1.175196444 1.046159727 1.144599621 1.151821543 1.181328875 1.164195174 1.108109345 1.234044555 1 15.77564902 -6.485916622 24.97907364 1.148570624 1.111315279 0.042170602 0.063842198 1638.759206 1107475.215 0.016774936 0.024873364 3.27E-07 6.485916622 -0.037255345 SSGSPY(ph)GGGYGSGGGSGGYGSR ddPTM_K562_Paclitaxel_30min_R1 1 SSGSPYGGGYGSGGGSGGYGSR 22 0 P51991;H7C1J8;P51991-2 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 1 SSGS(0.231)PY(0.767)GGGY(0.002)GS(0.001)GGGSGGYGSR 90.498 0.00078408 7413900 381.36 342.82 540.15 415.78 258.13 232.04 198.45 329.41 310.95 375.4 TRUE FALSE 386.7002166 380.2502469 403.782452 389.1137318 293.2916762 273.189036 236.1048515 301.4245644 340.8181369 298.8932739 1.293773565 1.272194058 1.350925187 1.301848404 0.98125887 0.914001953 0.789930293 1.008468877 1.140267 1 8.223486622 -6.770333013 5.868598083 0.959064001 1.307267641 0.788346817 0.084262843 0.074863364 8.938867413 0.027996846 0.033605067 1.70E-07 6.770333013 0.34820364 SSGSPYGGGYGSGGGSGGYGS(ph)RRF ddPTM_K562_Paclitaxel_30min_R1 1 SSGSPYGGGYGSGGGSGGYGSRRF 24 2 P51991;H7C1J8;P51991-2 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 1 SSGSPYGGGYGS(0.001)GGGS(0.028)GGY(0.004)GS(0.967)RRF 67.076 0.019152 9075400 1093.4 1006 1455.2 1383 1314 992 964.21 1113.2 1375.3 1095.4 TRUE FALSE 1108.710973 1115.838482 1087.816762 1294.30057 1492.989046 1167.917272 1147.163814 1018.626712 1507.40371 872.1568787 1.271228836 1.279401114 1.247271894 1.484022659 1.711835431 1.339113754 1.315318198 1.167939778 1.728363035 1 9.768443852 -11.05940123 4.878838196 0.999990015 1.387599615 0.295913449 0.182020011 137417732.2 0.697015141 15414.58801 0.044906252 8.72E-12 11.05940123 0.387609601 SSGSPYGGGYGSGGGSGGYGSR ddPTM_K562_Paclitaxel_30min_R1 1 SSGSPYGGGYGSGGGSGGYGSR 22 0 P51991;H7C1J8;P51991-2 P51991 HNRNPA3 Heterogeneous nuclear ribonucleoprotein A3 0 218.12 1.76E-169 0 167.84 209.44 306 220.22 274.24 244.6 268.09 249.15 285.25 306.7 FALSE TRUE 170.1902778 232.3073675 228.7465154 206.0960749 311.5961309 287.9763756 318.958678 227.9831524 312.649537 244.1943716 0.696945948 0.951321547 0.936739508 0.843983723 1.276016842 1.179291618 1.306167197 0.933613461 1.280330644 1 7.931886138 -6.751474759 24.99861663 1.16726658 0.869645162 0.569913162 0.129721338 151.7963795 380815.5183 0.037181279 0.047427274 1.77E-07 6.751474759 -0.297621418 SSGSSSSGLGTVSNS(ph)PASQR ddPTM_K562_Paclitaxel_30min_R1 2 SSGSSSSGLGTVSNSPASQR 20 0 H0Y589;H0Y3N9;Q9UPP1-5;Q9UPP1-4;Q9UPP1-3;Q9UPP1-2;Q9UPP1 H0Y589 PHF8 Histone lysine demethylase PHF8 1 SSGSSSSGLGTVSNS(0.998)PAS(0.002)QR;SSGSSSSGLGTVSNS(1)PASQR 372.39 0 19746600 2691.5 2897.02 3855.9 3264.98 2621.95 2652.01 2172.32 3538.3 2759.15 3493.19 TRUE FALSE 2729.189304 3213.326441 2882.430356 3055.578796 2979.10398 3122.306737 2584.50638 3237.69933 3024.178686 2781.275961 0.981272388 1.155342543 1.03636978 1.098624818 1.071128512 1.122616663 0.929252047 1.164105747 1.087334996 1 11.44153118 -11.51934041 2.949457088 0.997176114 1.073987723 0.085943155 0.069898218 30015204.63 35524794.33 686990.437 0.01629836 3.02E-12 11.51934041 0.076811609 SSGTPGCSSGTERPQS(ph)PGSSK ddPTM_K562_Paclitaxel_30min_R1 2 SSGTPGCSSGTERPQSPGSSK 21 1 Q8IYD8-2;Q8IYD8-3;Q8IYD8 Q8IYD8-2 FANCM Fanconi anemia group M protein 1 SSGTPGCS(0.001)S(0.001)GT(0.004)ERPQS(0.914)PGS(0.062)S(0.017)K;SSGTPGCS(0.005)S(0.005)GT(0.004)ERPQS(0.787)PGS(0.168)S(0.03)K 59.189 0.019189 8260300 1995.58 1785.9 3714 2500.8 2041.24 1594.23 1517.82 2171.8 1611.86 2976.1 TRUE FALSE 2023.524277 1980.890602 2776.354766 2340.409881 2319.291446 1876.944306 1805.818421 1987.292034 1766.686355 2369.569186 0.853962943 0.83597078 1.171670691 0.987694259 0.978781907 0.79210361 0.762087232 0.838672298 0.745572809 1 11.21040907 -7.258350423 24.51794354 0.813504207 0.971087645 0.286313557 0.107551748 254.1307868 2017114.572 0.037020159 0.035499407 5.52E-08 7.258350423 0.157583438 SSHYDELLAAEAR ddPTM_K562_Paclitaxel_30min_R1 2 SSHYDELLAAEAR 13 0 Q7KZF4;H7C597 Q7KZF4 SND1 Staphylococcal nuclease domain-containing protein 1 0 ; 195.72 4.02E-06 43842000 5612.6 5290.4 7487.9 6307.7 5554.6 5725.5 5232.6 6459 6349.2 7510.3 FALSE TRUE 5691.193716 5868.023763 5597.487036 5903.152354 6311.23056 6740.837035 6225.458534 5910.267634 6959.069029 5979.696738 0.951752901 0.981324642 0.936082093 0.987199287 1.05544325 1.127287441 1.041099375 0.988389193 1.163782937 1 12.5458566 -6.692641045 3.50888342 1.064942226 0.959350104 0.485102213 0.050460403 0.202329437 4.980354167 0.015287773 0.019715338 2.03E-07 6.692641045 -0.105592122 SSHYGGS(ph)LPNVNQIGSGLAEFQSPLHSPLDSSR ddPTM_K562_Paclitaxel_30min_R1 2 SSHYGGSLPNVNQIGSGLAEFQSPLHSPLDSSR 33 0 Q53ET0 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 S(0.014)S(0.014)HY(0.049)GGS(0.917)LPNVNQIGS(0.005)GLAEFQSPLHSPLDSSR;S(0.019)S(0.019)HY(0.06)GGS(0.9)LPNVNQIGS(0.003)GLAEFQSPLHSPLDSSR 110.48 1.16E-14 101712000 1571.13 1698.25 1425.75 1209.6 1238.33 1452.14 1639.37 1776.49 1685.05 2167.02 TRUE FALSE 1593.130667 1883.670678 1065.801779 1132.02167 1407.011511 1709.65664 1950.431899 1625.566086 1846.906582 1725.380134 0.923350533 1.091742417 0.617719978 0.656099863 0.815479142 0.990886939 1.130436047 0.942149532 1.070434593 1 10.75269854 -7.316504174 4.424736882 1.033461781 0.814976771 0.38171283 0.131605901 0.260989971 10.83788261 0.051907696 0.046277584 4.82E-08 7.316504174 -0.218485011 SSIPS(ph)PIGGSLGR ddPTM_K562_Paclitaxel_30min_R1 1 SSIPSPIGGSLGR 13 0 P35712-4;P35712-2;P35712-3;P35712 P35712-4 SOX6 Transcription factor SOX-6 1 SS(0.001)IPS(0.991)PIGGS(0.008)LGR 86.498 0.021875 54654000 1310.8 1272 1541.4 1491.9 1362.2 1530.2 1413.2 1292.2 1264.7 1600.3 TRUE FALSE 1329.155244 1410.881262 1152.254506 1396.216211 1547.754702 1801.559485 1681.347323 1182.419544 1386.180086 1274.157982 1.043163613 1.10730481 0.904326248 1.095795209 1.214727471 1.413921594 1.319575239 0.928000736 1.087918536 1 10.31532845 -6.532991624 7.074176235 1.176115896 1.022578668 0.16396827 0.141628124 0.254337277 68.69928612 0.045357191 0.060651691 2.93E-07 6.532991624 -0.153537228 SSKS(ph)AGALEEGTSEGQLCGR ddPTM_K562_Paclitaxel_30min_R1 1 SSKSAGALEEGTSEGQLCGR 20 1 H7BXQ8;C9J5N7;Q8N2F6-3;Q8N2F6 H7BXQ8 ARMC10 Armadillo repeat-containing protein 10 1 S(0.013)S(0.013)KS(0.971)AGALEEGTS(0.002)EGQLCGR 109.37 0.00075004 9251000 563.96 611.54 1000.1 639.08 790.6 597.22 515.15 618.52 662.41 922.46 TRUE FALSE 571.85718 678.3100053 747.6123859 598.0922692 898.293105 703.1285816 612.8970232 565.9728653 726.0374402 734.4621457 0.778606744 0.923546583 1.017904585 0.814326882 1.223062496 0.957338082 0.834484155 0.770595011 0.988529422 1 9.520544326 -11.09174181 19.0542606 0.999999985 0.92548352 0.0303413 0.129725892 0 0 0.128139849 0.031078478 8.10E-12 11.09174181 -0.074516465 SSLFS(ph)PRR ddPTM_K562_Paclitaxel_30min_R1 1 SSLFSPRR 8 1 Q7RTP6 Q7RTP6 MICAL3 Protein-methionine sulfoxide oxidase MICAL3 1 SSLFS(1)PRR 72.096 0.02496 2700900 1438.1 1246.5 1672.8 1443.6 1126.9 1479.1 1112.6 1536.1 1297.6 1555.9 TRUE FALSE 1458.237837 1382.597085 1250.480951 1351.013957 1280.402859 1741.397617 1323.710042 1405.598717 1422.240278 1238.806726 1.17713103 1.116071665 1.009423766 1.090576866 1.033577581 1.405705653 1.06853637 1.134639236 1.148072777 1 10.27473541 -5.260454291 22.09896244 1.117570975 1.177131068 0.028673315 0.109522712 86.23758453 1932954.474 0.027267196 0.161111486 5.49E-06 5.260454291 0.059560093 SSLGQS(ph)ASETEEDTVSVSKK ddPTM_K562_Paclitaxel_30min_R1 1 SSLGQSASETEEDTVSVSKK 20 1 E9PPJ0;Q13435;E9PJ04;H0YCG1 E9PPJ0 SF3B2 Splicing factor 3B subunit 2 1 S(0.013)S(0.015)LGQS(0.958)AS(0.005)ET(0.01)EEDTVSVSKK 98.766 0.00046829 10791000 1198.3 887.46 2930 1285.5 1101.4 1282.6 836.86 1406.4 1437.5 2002.4 TRUE FALSE 1215.079897 984.355884 2190.285262 1203.053784 1251.429327 1510.051101 995.6498163 1286.917542 1575.578298 1594.309781 0.762135384 0.617418206 1.373814103 0.754592237 0.784934861 0.947150372 0.624502106 0.807194158 0.988251039 1 10.63871626 -8.770187868 23.14357817 0.994125951 0.837254542 0.090867411 0.202423027 221.6617614 586333.9853 0.183494496 0.050678683 1.70E-09 8.770187868 -0.156871409 SSLGSLQT(ph)PEAVTTR ddPTM_K562_Paclitaxel_30min_R1 2 SSLGSLQTPEAVTTR 15 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 SSLGS(0.064)LQT(0.934)PEAVT(0.002)TR;SS(0.002)LGS(0.012)LQT(0.985)PEAVT(0.001)TR 197.1 7.31E-09 61821000 2863.8 2864.6 3665.5 2997.4 2662.3 2016.38 2070 2795.4 2330.5 2401.1 TRUE FALSE 2903.902036 3177.366715 2740.099191 2805.16018 3024.950333 2373.956682 2462.771694 2557.913322 2554.354938 1911.754502 1.518972249 1.662016076 1.433290304 1.467322387 1.582290158 1.241768584 1.288225916 1.337992571 1.336131253 1 10.90068156 -9.639254963 0.060641548 1.94E-09 2.421856466 0.759786262 0.088409882 32.73535647 0.777264942 17.80128006 12.76522221 2.29E-10 9.639254963 2.421856464 SSLHTPFS(ph)PNSETLASAYHANTR ddPTM_K562_Paclitaxel_30min_R1 1 SSLHTPFSPNSETLASAYHANTR 23 0 Q9UGU0-2;Q9UGU0 Q9UGU0-2 TCF20 Transcription factor 20 1 S(0.007)S(0.007)LHT(0.116)PFS(0.856)PNS(0.01)ET(0.002)LASAYHANTR 98.98 9.97E-06 0 597.87 724.34 545.7 556.39 636.66 527.28 443.01 618.27 598.27 655.1 TRUE FALSE 606.2420246 803.4258908 407.9312859 520.7056357 723.3838707 620.7857046 527.0688348 565.7441044 655.7365066 521.5902604 1.162295523 1.540339135 0.782091455 0.998303985 1.386881477 1.190178866 1.010503598 1.084652355 1.257187023 1 9.02677312 -6.89306121 0.017908983 7.25E-06 2.309300652 0.047413941 0.201341892 3688.661586 20.53967085 1239.927297 1407.065617 1.28E-07 6.89306121 2.309293402 SSLPS(ph)DLR ddPTM_K562_Paclitaxel_30min_R1 1 SSLPSDLR 8 0 E7EWN3;Q9C0A6;Q9C0A6-2;Q9C0A6-3 E7EWN3 SETD5 SET domain-containing protein 5 1 S(0.005)S(0.005)LPS(0.99)DLR 88.643 0.017326 32348000 5059 4616.2 5941.4 5542 5523.2 5102.3 4154 4204.9 5069.9 3994.3 TRUE FALSE 5129.841608 5120.212327 4441.420088 5186.560925 6275.553349 6007.121265 4942.199815 3847.667499 5556.886548 3180.259467 1.613026126 1.609998297 1.396559033 1.630860934 1.973283442 1.888877724 1.554024087 1.209859616 1.747306031 1 11.63492876 -11.50747319 8.144252807 0.99993943 1.621613206 0.446246479 0.208795071 0.000249969 1.51E-05 0.220070687 0.05336985 3.11E-12 11.50747319 0.621673776 SSLSNNECGSLDKT(ph)SPEMSNSNNDER ddPTM_K562_Paclitaxel_30min_R1 2 SSLSNNECGSLDKTSPEMSNSNNDER 26 1 Q5UIP0-2;Q5UIP0 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 SSLS(0.006)NNECGS(0.108)LDKT(0.429)S(0.429)PEMS(0.019)NS(0.01)NNDER;SSLSNNECGS(0.011)LDKT(0.925)S(0.054)PEMS(0.01)NSNNDER 129.26 1.67E-10 45481000 2237.63 1649.6 3506.7 2400.84 1526.43 1616.47 1666.88 2242.41 1617.92 2653.27 TRUE FALSE 2268.963724 1829.708907 2621.390215 2246.860868 1734.355609 1903.128258 1983.161778 2051.903274 1773.328445 2112.532118 1.074049339 0.866121225 1.24087591 1.063586607 0.820984256 0.90087542 0.938760534 0.971300392 0.839432655 1 11.04475756 -6.738130656 24.84927576 0.911249812 1.060064118 0.357311304 0.098065013 253.0986714 269825.5061 0.028961088 0.037364656 1.83E-07 6.738130656 0.148814307 SSLSTSS(ph)PESAR ddPTM_K562_Paclitaxel_30min_R1 2 SSLSTSSPESAR 12 0 D6REJ6;D6R9F1;D6REQ4;D6RDH3;D6RBZ2;D6RF08;D6RF67;D6RF51;D6RB63;D6R9D1;D6RC23;D6RAM4;D6RGK2;D6R9N9;D6RC13;Q8N7B6-2;Q8N7B6-3;Q8N7B6-4;Q8N7B6 D6REJ6 PACRGL PACRG-like protein 1 SSLST(0.006)S(0.041)S(0.953)PESAR;SSLS(0.001)T(0.01)S(0.021)S(0.968)PESAR 212.68 4.81E-15 51869000 7360.9 7115.1 9378.1 7526.9 6434.6 6404.3 6232.4 7362.9 6610 8330.3 TRUE FALSE 7463.97531 7891.95068 7010.482668 7044.158323 7311.101459 7540.012684 7414.965365 6737.375687 7244.920034 6632.580287 1.125350163 1.189876389 1.056976676 1.062053985 1.102301238 1.136814386 1.117960891 1.015800095 1.092323006 1 12.69535452 -14.99999927 0.050568034 0.574574799 1.307017324 0.413667266 0.041822925 572.5176618 2.134857504 32.326596 7.09482558 1.00E-15 14.99999927 0.732442525 SSMLPPKQALASAARNLCRGAGCNR ddPTM_K562_Paclitaxel_30min_R1 1 SSMLPPKQALASAARNLCRGAGCNR 25 3 Q5T036 Q5T036 FAM120AOS Putative FAM120A opposite strand protein 0 40.012 0.029625 38181000 1660.7 1524.4 1914.8 1485.5 1797.5 1825.3 1131.1 1310.8 3636.5 1660.7 FALSE TRUE 1683.954924 1690.839147 1431.385058 1390.226679 2042.349932 2148.991327 1345.72032 1199.439358 3985.802073 1322.248428 1.273554112 1.278760565 1.082538672 1.051411103 1.544603789 1.625255346 1.017751499 0.907121031 3.014412411 1 10.36877755 -8.713652356 24.99998811 2.00724884 1.231443524 0.283178908 0.499153318 120.6048299 63094.899 0.312424827 0.118084776 1.93E-09 8.713652356 -0.775805316 SSMS(ph)GLHLVK ddPTM_K562_Paclitaxel_30min_R1 1 SSMSGLHLVK 10 0 A0A0C4DGT1;Q13085;Q13085-4;Q13085-2 A0A0C4DGT1 ACACA Acetyl-CoA carboxylase 1;Biotin carboxylase 1 S(0.093)S(0.093)MS(0.814)GLHLVK 145.23 0.00051543 107900000 1738.1 1370 2803.9 1782.2 1459.6 1262.3 1562.2 2279.5 2319.4 3056.1 TRUE FALSE 1762.438762 1519.581233 2096.020767 1667.897669 1658.422231 1486.151181 1858.619295 2085.842247 2542.188733 2433.265142 0.7243102 0.624502939 0.861402537 0.685456607 0.681562483 0.610764177 0.763837554 0.857219466 1.044764374 1 11.24867782 -8.468635647 2.123469931 1.023823858 0.701607419 0.777649413 0.067614853 0.152263528 1.257128994 0.056133879 0.019230038 3.40E-09 8.468635647 -0.322216439 SSPNVANQPPS(ph)PGGK ddPTM_K562_Paclitaxel_30min_R1 4 SSPNVANQPPSPGGK 15 0 A8MQ02;J3KN01;P55196;P55196-5;P55196-3;P55196-1;Q5TIG5;P55196-2;P55196-6 A8MQ02 MLLT4 Afadin 1 SSPNVANQPPS(1)PGGK;SSPNVANQPPS(1)PGGK;SSPNVANQPPS(1)PGGK;SSPNVANQPPS(1)PGGK 210.98 5.65E-14 173282700 23066.9 19946.4 41453.3 26781.5 19385.8 17688.9 16384.6 24593 24937.7 31341.9 TRUE FALSE 23389.90777 22124.21541 30987.90173 25063.85446 22026.47416 20825.77805 19493.49232 22503.67115 27333.07751 24954.40358 0.937305822 0.886585622 1.2417809 1.004386035 0.882668828 0.834553228 0.781164425 0.901791585 1.095320809 1 14.6070068 -6.703622437 6.025258303 0.900261667 1.025816071 0.141721792 0.118697649 0.355253607 26.0936867 0.037171657 0.047701149 1.98E-07 6.703622437 0.125554403 SSPPAPPLPPGS(ph)GSPGTPQALPR ddPTM_K562_Paclitaxel_30min_R1 1 SSPPAPPLPPGSGSPGTPQALPR 23 0 Q9Y3L3;A0A2R8Y5V0 Q9Y3L3 SH3BP1 SH3 domain-binding protein 1 1 S(0.253)S(0.253)PPAPPLPPGS(0.365)GS(0.116)PGT(0.012)PQALPR 103.66 7.50E-05 19276000 847.75 931.47 1249.3 1095.5 1035.3 664.75 901.14 1165.9 970.02 1289.8 TRUE FALSE 859.6211155 1033.171045 933.8987639 1025.239533 1176.325388 782.6340789 1072.126611 1066.849518 1063.194755 1026.938052 0.837072026 1.006069492 0.909401265 0.998346036 1.145468693 0.762104469 1.044003198 1.038864531 1.035305638 1 10.00413344 -4.395378741 1.23447903 0.995871795 7.50E-12 0.187833742 0.095481859 19.32909079 5.046254774 0.027779199 40.89254519 4.02E-05 4.395378741 -0.995871795 SSPS(ph)PALEQPFR ddPTM_K562_Paclitaxel_30min_R1 1 SSPSPALEQPFR 12 0 Q9UMZ2-6;Q9UMZ2-9;Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2 Q9UMZ2-6 SYNRG Synergin gamma 1 S(0.015)S(0.058)PS(0.928)PALEQPFR 98.337 0.004561 0 764.98 698.55 823.97 688.71 673 624.13 538.42 638.55 450.92 757.82 TRUE FALSE 775.6920802 774.8200513 615.9485828 644.5392232 764.673994 734.8106923 640.5823843 584.3011918 494.2328808 603.375868 1.285586848 1.284141598 1.020837285 1.068221746 1.267326114 1.217832418 1.061663912 0.968386743 0.819112774 1 9.236913187 -8.115954044 2.35637428 0.911654322 1.184368309 0.610161994 0.093695942 0.2259206 2.423388373 0.059848681 0.029528587 7.66E-09 8.115954044 0.272713987 SSPS(ph)PALEQPFRDR ddPTM_K562_Paclitaxel_30min_R1 1 SSPSPALEQPFRDR 14 1 Q9UMZ2-6;Q9UMZ2-9;Q9UMZ2-4;Q9UMZ2-8;Q9UMZ2-3;Q9UMZ2-7;Q9UMZ2-5;Q9UMZ2 Q9UMZ2-6 SYNRG Synergin gamma 1 S(0.041)S(0.041)PS(0.918)PALEQPFRDR 89.506 0.010712 10865000 1101.5 910.82 1699.4 1137.7 1083.2 952.22 807.01 1089.7 1415.1 1107.8 TRUE FALSE 1116.924398 1010.266408 1270.365452 1064.733014 1230.750179 1121.082847 960.1359346 997.1231833 1551.026678 882.0297519 1.266311478 1.14538813 1.440275058 1.207139569 1.395361297 1.271026113 1.088552776 1.130487017 1.758474331 1 9.78468351 -11.54458171 7.439625756 0.999882229 1.287861096 0.186361358 0.186632218 0.000352315 2.16E-05 0.174631467 0.042337203 2.85E-12 11.54458171 0.287978867 SSPS(ph)TENMHFPSSISSQTR ddPTM_K562_Paclitaxel_30min_R1 1 SSPSTENMHFPSSISSQTR 19 0 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 SS(0.001)PS(0.499)T(0.499)ENMHFPSSISSQTR 274.82 6.03E-120 56109000 516.79 468.36 600.86 693.23 469.04 388.34 553.43 604.18 483.75 562.68 TRUE FALSE 524.0266544 519.4971287 449.1654617 648.7693306 532.9311889 457.2066464 658.4404534 552.8511378 530.216349 448.0055071 1.169687975 1.159577551 1.002589152 1.448128026 1.189563924 1.020538005 1.469715088 1.234027549 1.183504088 1 8.807372657 -6.210692119 24.99973793 1.231262388 1.115514286 0.099343731 0.149476856 830.7301228 409243.0866 0.039781895 0.068904183 6.16E-07 6.210692119 -0.115748102 SSPST(ph)ENMHFPSSISSQTR ddPTM_K562_Paclitaxel_30min_R1 1 SSPSTENMHFPSSISSQTR 19 0 A0A0U1RR27;Q7Z401;Q7Z401-2 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 S(0.001)S(0.001)PS(0.316)T(0.658)ENMHFPS(0.021)S(0.003)ISSQTR 166.3 8.06E-12 51630000 776.28 834.2 754.51 743.36 775.88 786.56 705.87 704.69 842.48 805.97 TRUE FALSE 787.150315 925.2807771 564.0246188 695.6842168 881.5679918 926.0453721 839.8051476 644.822186 923.4039683 641.7128716 1.226639436 1.441892189 0.878936116 1.084105131 1.373773273 1.44308368 1.308693007 1.004845336 1.438967503 1 9.325784111 -11.07798232 4.242363112 0.999976313 1.239356933 0.131329309 0.188257391 66064108.99 58654587.41 20504.29788 0.049676386 8.36E-12 11.07798232 0.23938062 SSPVNNHHS(ph)PGQTPTLGQPEAR ddPTM_K562_Paclitaxel_30min_R1 1 SSPVNNHHSPGQTPTLGQPEAR 22 0 H0Y2V6;Q5SW79-2;Q5SW79-3;Q5SW79;E7EWM2;E7EMW0;Q96L14 H0Y2V6 CEP170;CEP170P1 Centrosomal protein of 170 kDa;Cep170-like protein 1 S(0.004)S(0.004)PVNNHHS(0.973)PGQT(0.017)PT(0.002)LGQPEAR 66.77 0.0065989 5213000 3382.3 2775.4 6379.8 3648.7 2585.5 2203.8 2172.5 3580.9 3359.7 4214.9 TRUE FALSE 3429.662635 3078.427558 4769.140586 3414.688713 2937.688873 2594.612987 2584.720534 3276.680194 3682.414197 3355.901066 1.021979661 0.917317733 1.421120734 1.017517694 0.875380059 0.773149427 0.770201649 0.976393561 1.097295219 1 11.71248447 -6.526199142 13.99469191 0.904069334 1.119760771 0.268578973 0.151332605 0.573586313 2387.13929 0.046620154 0.061427821 2.98E-07 6.526199142 0.215691437 SSQQPAASTQLPTT(ph)PSSNPSGLNQHTR ddPTM_K562_Paclitaxel_30min_R1 3 SSQQPAASTQLPTTPSSNPSGLNQHTR 27 0 C9JU75;H0Y2P2;A0A0C4DFP4;Q96IV0-3;Q96IV0-5;Q96IV0-2;Q96IV0 C9JU75 NGLY1 Peptide-N(4)-(N-acetyl-beta-glucosaminyl)asparagine amidase 1 SSQQPAASTQLPT(0.011)T(0.986)PS(0.003)S(0.001)NPSGLNQHTR;SSQQPAASTQLPT(0.022)T(0.97)PS(0.007)S(0.001)NPSGLNQHTR;SSQQPAASTQLPT(0.209)T(0.562)PS(0.209)S(0.019)NPSGLNQHTR 137.71 4.21E-19 56439000 4254.36 4409.3 5107.56 4111.7 3754.05 3800.36 3619.15 4481.22 3548.34 4528.93 TRUE FALSE 4313.934166 4890.722285 3818.093308 3847.993965 4265.415167 4474.300486 4305.864819 4100.51239 3889.173911 3605.93158 1.196343877 1.356299247 1.05883687 1.067128946 1.182888547 1.240816801 1.194106079 1.137157569 1.078549003 1 11.81615631 -15 0.115800222 0.423531367 1.262069034 0.333531425 0.081193691 209.4643622 1.587097887 28.10580313 0.950129849 1.00E-15 15 0.838537668 SSQQPS(ph)TPQQAPPGQPQQGTFVAHK ddPTM_K562_Paclitaxel_30min_R1 1 SSQQPSTPQQAPPGQPQQGTFVAHK 25 0 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 S(0.039)S(0.039)QQPS(0.471)T(0.452)PQQAPPGQPQQGTFVAHK 93.384 6.28E-05 6777700 1790.4 1672.4 2979.4 2281.2 1553 1608.2 1415.1 2372.9 1342.3 3052.7 TRUE FALSE 1815.471124 1854.998288 2227.213621 2134.894042 1764.544893 1893.39169 1683.607838 2171.307334 1471.233913 2430.558064 0.74693592 0.763198508 0.916338373 0.878355499 0.725983435 0.778994634 0.692683653 0.893336952 0.605307042 1 11.24707188 -4.012508938 15.03772822 0.795893381 0.293906773 0 0.11317063 0 0 0.024370453 0 9.72E-05 4.012508938 -0.501986608 SSQQPST(ph)PQQAPPGQPQQGTFVAHK ddPTM_K562_Paclitaxel_30min_R1 1 SSQQPSTPQQAPPGQPQQGTFVAHK 25 0 E7ERS3;Q86VM9;H3BRH3 E7ERS3 ZC3H18 Zinc finger CCCH domain-containing protein 18 1 S(0.091)S(0.091)QQPS(0.212)T(0.606)PQQAPPGQPQQGTFVAHK 110.1 1.35E-06 10295000 1859.9 1862.8 3075.7 2477.6 1678.1 1393.4 1456.5 2244.6 1271.5 2870 TRUE FALSE 1885.944338 2066.186804 2299.201495 2318.697825 1906.68563 1640.499926 1732.863272 2053.90722 1393.633256 2285.092425 0.825325189 0.904202728 1.006174398 1.014706364 0.834401974 0.717914036 0.758333997 0.898828948 0.609880476 1 11.1580368 -6.94596138 6.742678798 0.786882865 0.939299979 0.269236216 0.10921086 0.255820736 24.74328592 0.033034382 0.037419127 1.13E-07 6.94596138 0.152417114 SSQSEGIFLGSES(ph)DEDSVR ddPTM_K562_Paclitaxel_30min_R1 2 SSQSEGIFLGSESDEDSVR 19 0 Q9BYW2;C9JG86;Q9BYW2-3;Q9BYW2-2;H7BZ93;H7BXT4 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 SSQSEGIFLGS(0.01)ES(0.99)DEDSVR;SSQSEGIFLGS(0.359)ES(0.641)DEDS(0.001)VR 152.51 7.89E-12 28740000 1774.38 1751.25 2491.14 2377.56 2273.17 1886.38 1776.35 2145.54 1608.45 2614.7 TRUE FALSE 1799.226794 1942.457397 1862.220897 2225.073943 2582.814239 2220.903007 2113.403139 1963.262985 1762.948809 2081.822705 0.864255534 0.933056111 0.894514645 1.068810489 1.240650433 1.066806987 1.015169608 0.94305004 0.846829466 1 11.02363149 -6.253601229 24.34953782 1.033734506 0.900853482 0.271022061 0.096018101 619.9054653 1925754.021 0.02947091 0.04979397 5.58E-07 6.253601229 -0.132881025 SSQTGTEPGAAHTS(ph)SPQPSTSR ddPTM_K562_Paclitaxel_30min_R1 2 SSQTGTEPGAAHTSSPQPSTSR 22 0 A0A075B6T1;Q9C0C7-4;Q9C0C7-2;Q9C0C7-3;Q9C0C7;Q9C0C7-5;H0YE34 A0A075B6T1 AMBRA1 Activating molecule in BECN1-regulated autophagy protein 1 1 SSQTGTEPGAAHT(0.001)S(0.628)S(0.326)PQPS(0.015)T(0.015)S(0.015)R;SSQTGTEPGAAHT(0.001)S(0.525)S(0.309)PQPS(0.026)T(0.026)S(0.113)R 223.82 8.59E-45 63002000 3846.2 3854.9 5287.9 4222.9 3461.8 3309.3 3765 3943.3 3824.7 4170.7 TRUE FALSE 3900.058667 4275.791018 3952.904245 3952.062095 3933.355769 3896.15789 4479.389095 3608.292052 4192.079524 3320.709051 1.174465636 1.287613866 1.19037958 1.190125975 1.184492742 1.173290954 1.348925494 1.08660289 1.262404944 1 11.69727561 -11.92134151 2.594909557 0.868449506 1.210480522 0.458254866 0.068798425 8833571.846 4412618.098 7045794.367 0.016234029 1.20E-12 11.92134151 0.342031016 SSRDPPSSPS(ph)SLSSPIQESTAPELPSETQETPGPALCSPLRK ddPTM_K562_Paclitaxel_30min_R1 1 SSRDPPSSPSSLSSPIQESTAPELPSETQETPGPALCSPLRK 42 2 Q16512;Q16512-2 Q16512 PKN1 Serine/threonine-protein kinase N1 1 S(0.003)S(0.003)RDPPS(0.026)S(0.087)PS(0.312)S(0.312)LS(0.09)S(0.09)PIQES(0.03)T(0.03)APELPS(0.008)ET(0.008)QET(0.001)PGPALCSPLRK 46.773 0.0011935 35213000 544.66 384.37 884.52 569.35 433.61 325 407.91 704.55 549.57 824.69 TRUE FALSE 552.2869204 426.3368165 661.2119864 532.8344393 492.6750231 382.6341868 485.3087931 644.6940798 602.358654 656.6177253 0.84110876 0.649292275 1.006996858 0.811483484 0.750322454 0.582735086 0.739104009 0.981840811 0.917365814 1 9.358909886 -8.262935093 24.81375715 0.962202498 0.767075341 0.41047501 0.108516012 132.3443907 2195521.805 0.05873753 0.030583897 5.46E-09 8.262935093 -0.195127157 SSRPDTLLSPEQPVCPAGGS(ph)GGPPSSASPEVEAGPQGCATEPRPHR ddPTM_K562_Paclitaxel_30min_R1 1 SSRPDTLLSPEQPVCPAGGSGGPPSSASPEVEAGPQGCATEPRPHR 46 2 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 SSRPDTLLSPEQPVCPAGGS(0.29)GGPPS(0.29)S(0.29)AS(0.116)PEVEAGPQGCAT(0.014)EPRPHR 44.616 0.0005042 104510000 1054.4 1280.6 1584.6 1074.8 805.87 1034.4 882.66 1163.8 606.46 1283.8 TRUE FALSE 1069.164853 1420.420239 1184.548132 1005.867139 915.6431375 1217.836316 1050.140127 1064.927926 664.7131927 1022.160855 1.045984932 1.389624961 1.158866656 0.984059538 0.895791629 1.191433139 1.02737267 1.041839863 0.650301945 1 9.997406533 -6.530642296 0.466641791 0.911209617 1.274028538 0.280566313 0.155676788 2.281043919 0.84861997 0.134944967 0.407291768 2.95E-07 6.530642296 0.362818921 SSRPDTLLSPEQPVCPAGGSGGPPS(ph)S(ph)ASPEVEAGPQGCATEPRPHR ddPTM_K562_Paclitaxel_30min_R1 1 SSRPDTLLSPEQPVCPAGGSGGPPSSASPEVEAGPQGCATEPRPHR 46 2 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 2 SSRPDTLLS(0.001)PEQPVCPAGGS(0.215)GGPPS(0.555)S(0.555)AS(0.555)PEVEAGPQGCAT(0.12)EPRPHR 54.287 4.15E-06 10408000 407.6 435.18 540.01 506.56 377.43 356.46 403.06 432.54 260.78 627.29 TRUE FALSE 413.3076576 482.6944241 403.6777967 474.0715089 428.8423559 419.6731761 479.5385309 395.7930272 285.8290842 499.4479537 0.827528984 0.966455905 0.808247974 0.949191013 0.858632722 0.840274093 0.960137142 0.792461005 0.57229003 1 8.964190536 -8.508351077 24.71230142 0.75155522 0.885957273 0.129620953 0.110511624 803.1669374 1366241.297 0.058477066 0.026411624 3.10E-09 8.508351077 0.134402053 SSRPDTLLSPEQPVCPAGGSGGPPS(ph)SASPEVEAGPQGCATEPRPHR ddPTM_K562_Paclitaxel_30min_R1 3 SSRPDTLLSPEQPVCPAGGSGGPPSSASPEVEAGPQGCATEPRPHR 46 2 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 SSRPDTLLSPEQPVCPAGGS(0.066)GGPPS(0.31)S(0.31)AS(0.31)PEVEAGPQGCAT(0.005)EPRPHR;SSRPDTLLSPEQPVCPAGGS(0.059)GGPPS(0.313)S(0.313)AS(0.313)PEVEAGPQGCAT(0.003)EPRPHR;SSRPDTLLSPEQPVCPAGGS(0.022)GGPPS(0.321)S(0.321)AS(0.321)PEVEAGPQGCAT(0.016)EPRPHR 77.077 6.06E-15 336790000 4997.9 5000 6506.2 5849.7 4940.8 4910.2 4680.04 5483.7 3519.57 6869.2 TRUE FALSE 5067.88602 5545.916909 4863.629342 5474.526424 5613.820608 5780.955027 5568.053159 5017.825457 3857.640424 5469.253269 0.926613885 1.014017204 0.889267529 1.000964145 1.026432738 1.056991648 1.018064603 0.917460796 0.705332197 1 12.41712816 -8.524260119 24.99222934 0.838909541 0.990009076 0.320018883 0.080782249 48.87530093 884155.3739 0.051347912 0.019736906 2.99E-09 8.524260119 0.151099535 SSS(ph)AGPEGPQLDVPREFLPR ddPTM_K562_Paclitaxel_30min_R1 3 SSSAGPEGPQLDVPREFLPR 20 1 O75081;O75081-2;O75081-4 O75081 CBFA2T3 Protein CBFA2T3 1 S(0.121)S(0.121)S(0.758)AGPEGPQLDVPREFLPR;S(0.093)S(0.021)S(0.886)AGPEGPQLDVPREFLPR;S(0.305)S(0.305)S(0.389)AGPEGPQLDVPREFLPR 174.81 1.58E-14 99744000 789.65 891.24 1194.58 1130.89 810.16 826.74 870.33 933 1465.2 831.26 TRUE FALSE 800.7075363 988.5485972 892.9935046 1058.359777 920.5175081 973.350731 1035.470574 853.7358264 1605.939007 661.8487557 1.209804399 1.493617067 1.349241042 1.59909612 1.390827587 1.470654319 1.564512383 1.289925862 2.426444097 1 9.370357763 SSS(ph)APNVHINTIEPVNIDDLIR ddPTM_K562_Paclitaxel_30min_R1 2 SSSAPNVHINTIEPVNIDDLIR 22 0 A0A2R8Y679;A0A2R8Y492;A0A2R8YDP5;H7C560;A0A2U3TZI2;A0A2R8Y8E0;P15056 A0A2R8Y679 BRAF Serine/threonine-protein kinase B-raf 1 S(0.138)S(0.138)S(0.723)APNVHINTIEPVNIDDLIR;S(0.157)S(0.157)S(0.686)APNVHINTIEPVNIDDLIR 152 4.22E-18 850540000 6523.4 5725.3 8118.9 6243.4 5038.9 5081.2 5386.5 6928.8 4188 6854.4 TRUE FALSE 6614.747726 6350.407616 6069.183282 5842.976268 5725.283489 5982.279476 6408.560256 6340.155192 4590.276112 5457.469518 1.212053994 1.163617606 1.112087436 1.07063837 1.049072921 1.096163608 1.174273211 1.161739002 0.841099725 1 12.41401645 -2 0.127493799 0.953913107 1.724304399 0.335555476 0.083588158 117.7949555 1.022544724 0.495787674 16.261913 0.01 2 0.770391292 SSS(ph)CESLGSQPAAARPPSVDSLSSASTSHSENSVHTK ddPTM_K562_Paclitaxel_30min_R1 1 SSSCESLGSQPAAARPPSVDSLSSASTSHSENSVHTK 37 1 Q13614 Q13614 MTMR2 Myotubularin-related protein 2 1 S(0.041)S(0.041)S(0.37)CES(0.37)LGS(0.112)QPAAARPPS(0.012)VDS(0.035)LS(0.013)S(0.004)AS(0.002)T(0.001)SHSENSVHTK 68.441 4.20E-06 13863000 268.58 313.21 527.44 305.35 193.93 228.49 145.01 386.67 208.97 246.75 TRUE FALSE 272.3409486 347.407327 394.2812487 285.7662177 220.3465493 269.0094933 172.5248905 353.81997 229.0425022 196.4622146 1.386225587 1.768316253 2.006906262 1.454560707 1.121572155 1.369268355 0.878158128 1.800956844 1.165834879 1 7.618108056 -6.505671945 7.48289301 1.255355812 1.727217054 0.399732848 0.272087554 0.177570176 52.22399801 0.07673802 0.108292256 3.12E-07 6.505671945 0.471861242 SSS(ph)ELNGVSTTSVVK ddPTM_K562_Paclitaxel_30min_R1 1 SSSELNGVSTTSVVK 15 0 Q99963-2;Q99963-4;Q99963;Q99963-3 Q99963-2 SH3GL3 Endophilin-A3 1 S(0.002)S(0.002)S(0.996)ELNGVSTTSVVK 163.02 4.80E-05 10191000 1518.6 1255.2 2236.4 1387.1 1260.5 1561.8 1391.6 1633.6 1464.2 2567.7 TRUE FALSE 1539.865085 1392.246981 1671.793161 1298.137614 1432.20144 1838.763301 1655.648835 1494.815483 1604.842952 2044.401331 0.753210763 0.681004732 0.81774216 0.634972006 0.700548087 0.89941406 0.809845313 0.731175167 0.784994085 1 10.99746272 -7.241130771 24.87525916 0.82608165 0.716452888 0.369540254 0.081451589 973.843239 1192825.15 0.026478636 0.026448175 5.74E-08 7.241130771 -0.109628762 SSS(ph)ESYTQSFQSR ddPTM_K562_Paclitaxel_30min_R1 3 SSSESYTQSFQSR 13 0 Q9BTU6;E9PAM4 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha 1 SS(0.006)S(0.985)ES(0.009)YTQSFQSR;S(0.298)S(0.036)S(0.666)ESYTQSFQSR;S(0.311)S(0.045)S(0.644)ESYTQSFQSR 322.18 9.43E-246 191903700 5608.6 5136.1 6530.8 5506.2 4823.36 4815.26 4468.96 5845.2 5558 5846.9 TRUE FALSE 5687.137704 5696.876767 4882.018768 5153.056977 5480.383292 5669.178751 5316.92183 5348.613775 6091.870734 4655.298571 1.221648326 1.223740364 1.048701537 1.106922982 1.177235619 1.217790581 1.142122626 1.148930341 1.30858862 1 12.18465798 -11.1529825 4.611085869 0.999978611 1.172131972 0.374894162 0.068390518 1.55E-05 2.84E-06 0.068166952 0.016530861 7.03E-12 11.1529825 0.172153361 SSS(ph)FGNFDR ddPTM_K562_Paclitaxel_30min_R1 4 SSSFGNFDR 9 0 Q9NSI8;A0A2R8Y4K8;Q9NSI8-3 Q9NSI8 SAMSN1 SAM domain-containing protein SAMSN-1 1 SS(0.004)S(0.996)FGNFDR;S(0.004)S(0.136)S(0.86)FGNFDR;S(0.005)S(0.149)S(0.846)FGNFDR;S(0.002)S(0.085)S(0.912)FGNFDR 139.31 0.00088725 1074705000 11402.5 10449.1 15135.1 12845.4 11045 10840.3 11059 14120.3 8670.4 14034.8 TRUE FALSE 11562.17018 11589.96807 11314.05682 12021.55354 12549.51599 12762.675 13157.38752 12920.69238 9503.23066 11174.50006 1.034692391 1.03718001 1.012488859 1.075802361 1.123049437 1.142124922 1.177447533 1.156265812 0.850439001 1 13.44792267 -6.400993264 4.927472458 1.091813434 1.029489717 0.033614663 0.090609082 0.612650775 22.01647064 0.026161462 0.039228996 3.97E-07 6.400993264 -0.062323717 SSS(ph)FGSVSTSSNSSK ddPTM_K562_Paclitaxel_30min_R1 2 SSSFGSVSTSSNSSK 15 0 E5RGS8;E5RH07;E5RGQ6;A0A0C4DGW2;P57768-2;P57768;E5RG30;E5RJ65;E5RHF1 E5RGS8 SNX16 Sorting nexin-16 1 S(0.028)S(0.13)S(0.842)FGSVSTSSNSSK;S(0.041)S(0.041)S(0.919)FGSVSTSSNSSK 95.236 0.0084507 15863400 9246 7442.8 15196.1 10868.7 8364.7 7954 6788.2 9895 8103.7 12264.1 TRUE FALSE 9375.472526 8255.430074 11359.65661 10171.63023 9504.113756 9364.53022 8076.225513 9054.357987 8882.096593 9764.669688 0.960142312 0.845438744 1.16334264 1.041676836 0.973316462 0.95902171 0.827086401 0.927256966 0.909615673 1 13.25335553 -7.381135188 3.064121634 0.90900584 1.000977854 0.162335796 0.083979876 0.463474692 8.302727256 0.033400394 0.028839577 4.16E-08 7.381135188 0.091972014 SSS(ph)FREMDGQPER ddPTM_K562_Paclitaxel_30min_R1 1 SSSFREMDGQPER 13 1 P00519-2;P00519 P00519-2 ABL1 Tyrosine-protein kinase ABL1 1 S(0.01)S(0.01)S(0.98)FREMDGQPER 180.3 0.00062452 40372000 2160.8 1854.3 2723.8 2289.8 1983.5 1719.8 2010.7 2359.4 2049.3 2487.3 TRUE FALSE 2191.057867 2056.758745 2036.143002 2142.942477 2253.686281 2024.782383 2392.219828 2158.954243 2246.144422 1980.386895 1.106378694 1.038564106 1.028154149 1.08208274 1.138003027 1.022417583 1.207955796 1.090167911 1.134194751 1 10.95156659 -6.520667791 24.41177701 1.105402015 1.055674316 0.083236761 0.058530554 127.3175134 1405763.36 0.01632758 0.021455115 3.02E-07 6.520667791 -0.049727699 SSS(ph)FSELCHR ddPTM_K562_Paclitaxel_30min_R1 1 SSSFSELCHR 10 0 Q5T8I3-2;Q5T8I3 Q5T8I3-2 FAM102B Protein FAM102B 1 S(0.044)S(0.078)S(0.877)FSELCHR 158.06 2.90E-37 0 1164.7 1263.6 1598.7 1264.2 1306.7 1088.6 1366.2 1557.5 1182.3 1885.2 TRUE FALSE 1181.009393 1401.564121 1195.088413 1183.11987 1484.694663 1281.647925 1625.429318 1425.180653 1295.865198 1500.995205 0.786817566 0.933756561 0.796197355 0.788223617 0.989140177 0.853865436 1.082901073 0.949490477 0.863337333 1 10.55170365 -6.764132342 24.99859946 0.95512303 0.831781367 0.429856356 0.073343017 72.8637238 676391.2149 0.02227128 0.026403576 1.72E-07 6.764132342 -0.123341663 SSS(ph)FSLPSR ddPTM_K562_Paclitaxel_30min_R1 4 SSSFSLPSR 9 0 Q14153-2;Q14153 Q14153-2 FAM53B Protein FAM53B 1 S(0.006)S(0.003)S(0.915)FS(0.076)LPSR;S(0.004)S(0.015)S(0.84)FS(0.141)LPSR;S(0.07)S(0.042)S(0.844)FS(0.044)LPSR;S(0.103)S(0.08)S(0.782)FS(0.035)LPSR 112.85 0.004966 128366500 7978.7 7193.6 9391.1 7824.5 6274.9 7189.8 6878.3 8199.6 7440.4 9011.6 TRUE FALSE 8090.426416 7979.021575 7020.200657 7322.671591 7129.647615 8464.81008 8183.421518 7502.9928 8155.083665 7175.030973 1.127580696 1.112053956 0.978420955 1.020577001 0.993674821 1.179759378 1.140541629 1.045708768 1.13659212 1 12.80876934 -7.247870715 24.98777324 1.10587851 1.04488746 0.147225005 0.064354441 1506.391215 2774137.069 0.021981127 0.021881821 5.65E-08 7.247870715 -0.060991051 SSS(ph)KVPGDS(ph)T(ph)VFY(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 SSSKVPGDSTVFYK 14 1 A0A286YEW9 A0A286YEW9 4 S(0.255)S(0.344)S(0.401)KVPGDS(1)T(1)VFY(1)K 67.449 0.024967 55358000 1560.1 1532.6 1222.4 1087 1068.1 1034.6 1030.9 1239.1 430.34 1262.2 TRUE FALSE 1581.946213 1699.934451 913.7900015 1017.284685 1213.593303 1218.071783 1226.507893 1133.830721 471.6760798 1004.962947 1.57413387 1.69153943 0.909277306 1.012260888 1.207600048 1.212056412 1.22045086 1.128231368 0.469346737 1 9.972926595 -2.000000011 0.424703233 0.981318622 14.60569775 0.425406043 0.245381282 80.28163893 1.02173694 0.169523684 932.2073185 0.01 2.000000011 13.62437913 SSS(ph)LDMNR ddPTM_K562_Paclitaxel_30min_R1 2 SSSLDMNR 8 0 Q96D71-3;Q96D71;E9PMG1;H0YDT0;Q96D71-4 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 1 S(0.002)S(0.18)S(0.818)LDMNR;SS(0.001)S(0.999)LDMNR 156.83 1.73E-07 128777000 6915.9 6338.9 8379.2 6812.4 6208 6653.3 6029.8 6982.6 5597.2 7852.4 TRUE FALSE 7012.743937 7031.002539 6263.767327 6375.483155 7053.634702 7833.169338 7173.923072 6389.384546 6134.836069 6252.07657 1.121666355 1.124586761 1.0018699 1.019738496 1.128206704 1.25289082 1.147446451 1.021961979 0.98124775 1 12.61011973 -8.406191454 4.778811878 0.993845698 1.111835049 0.38959159 0.065247646 0.278482896 9.624918645 0.044043746 0.019951094 3.92E-09 8.406191454 0.117989351 SSS(ph)LGSTPHEELER ddPTM_K562_Paclitaxel_30min_R1 1 SSSLGSTPHEELER 14 0 B1AKL4;Q9NRA8-2;Q9NRA8;Q9NRA8-3 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 SSS(1)LGSTPHEELER 139.48 4.46E-06 8632400 853.31 642.82 1029.9 728.82 881.16 769.47 511.38 938.33 685.13 802.52 TRUE FALSE 865.2589727 713.0052615 769.8890074 682.0767473 1001.18891 905.9247006 608.4116854 858.6130096 750.9397977 638.9659835 1.354154986 1.115873583 1.204898269 1.067469576 1.566889218 1.417798011 0.952181652 1.343753865 1.175242215 1 9.319595319 -9.017328154 22.27800985 0.999999989 1.247286394 0.168369112 0.170421249 494.980987 636377.0142 0.166757382 0.043056571 9.61E-10 9.017328154 0.247286405 SSS(ph)LIQLTSQNS(ph)SPNQQR ddPTM_K562_Paclitaxel_30min_R1 1 SSSLIQLTSQNSSPNQQR 18 0 H7C419;O95639 H7C419 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 2 S(0.182)S(0.008)S(0.81)LIQLT(0.001)S(0.002)QNS(0.753)S(0.245)PNQQR 194.27 1.30E-12 27620000 1516.9 1692.4 2244.3 1470.6 1143.6 1525.1 1528 2036.8 1442.6 2071.4 TRUE FALSE 1538.14128 1877.181955 1677.698708 1376.282298 1299.377681 1795.555072 1817.930023 1863.761127 1581.168176 1649.247543 0.932632149 1.138205094 1.017250997 0.83449104 0.787860917 1.088711685 1.102278449 1.130067548 0.958720953 1 10.68759224 SSS(ph)LIQLTSQNSSPNQQR ddPTM_K562_Paclitaxel_30min_R1 2 SSSLIQLTSQNSSPNQQR 18 0 H7C419;O95639 H7C419 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 1 SSS(1)LIQLTSQNSSPNQQR;SS(0.003)S(0.997)LIQLTSQNSSPNQQR 377.12 0 183945000 4019.3 3437.2 4551.3 3850.2 3483 3168.5 3468.7 4212.6 3233.9 5192.6 TRUE FALSE 4075.582601 3812.48512 3402.268025 3603.265405 3957.443568 3730.388987 4126.867717 3854.713336 3544.530544 4134.34527 0.985786705 0.922149668 0.822927889 0.871544385 0.957211677 0.902292562 0.998191358 0.932363672 0.857337816 1 12.01344316 -6.766916047 24.99140292 0.938751942 0.896593107 0.113064931 0.055032835 314.3986438 1434677.851 0.017497614 0.020421473 1.71E-07 6.766916047 -0.042158835 SSS(ph)LKSAQGTGFELGQLQSIR ddPTM_K562_Paclitaxel_30min_R1 1 SSSLKSAQGTGFELGQLQSIR 21 1 Q9C0B5-2;Q9C0B5;H0YEF4 Q9C0B5-2;H0YEF4 ZDHHC5 Palmitoyltransferase ZDHHC5;Palmitoyltransferase 1 S(0.04)S(0.04)S(0.905)LKS(0.015)AQGTGFELGQLQSIR 79.565 0.0017649 18805000 465.99 430.1 847.94 576.91 320.81 257.47 395.4 529.69 454.2 720.62 TRUE FALSE 472.5152977 477.0597725 633.8670598 539.9095748 364.5097534 303.1286894 470.4250859 484.6895283 497.8279394 573.7572484 0.82354567 0.831466223 1.104765232 0.941006979 0.635303091 0.528322196 0.819902646 0.844764105 0.867663007 1 9.164296664 -6.730306455 24.84838739 0.76404268 0.931327558 0.188778457 0.141404 294.2725221 234868.9403 0.044315954 0.057205481 1.86E-07 6.730306455 0.167284878 SSS(ph)LPAYGR ddPTM_K562_Paclitaxel_30min_R1 3 SSSLPAYGR 9 0 Q08495-3;Q08495-2;Q08495;Q08495-4 Q08495-3 DMTN Dematin 1 SS(0.012)S(0.988)LPAYGR;S(0.002)S(0.005)S(0.994)LPAYGR;S(0.001)S(0.064)S(0.934)LPAYGR 153.97 4.36E-05 96552000 4978.6 4429.4 5653.5 5237.4 4693.4 4560 4376.7 5106.6 4273.9 5445.7 TRUE FALSE 5048.31576 4913.016871 4226.204003 4901.496606 5332.72054 5368.651974 5207.155977 4672.762456 4684.427191 4335.863351 1.164316158 1.133111557 0.974708763 1.130454585 1.229909734 1.238196765 1.200950204 1.077700582 1.080390873 1 12.08210357 -8.824009255 1.803227252 1.00838224 1.149172848 0.302248007 0.071675677 0.471840752 3.144937694 0.076643724 0.022354238 1.50E-09 8.824009255 0.140790608 SSS(ph)MAAGLER ddPTM_K562_Paclitaxel_30min_R1 4 SSSMAAGLER 10 0 I3L3C6;B4DWA1;I3L4C2;Q9UQB8-3;Q9UQB8-5;Q9UQB8-4;Q9UQB8-6;Q9UQB8-2;Q9UQB8;I3L0Y9 I3L3C6;I3L0Y9 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 1 SS(0.129)S(0.871)MAAGLER;S(0.003)S(0.122)S(0.875)MAAGLER;S(0.001)S(0.082)S(0.916)MAAGLER;SS(0.002)S(0.998)MAAGLER 169.21 8.76E-05 173644000 6362.4 4866.81 5372.68 4577.7 4252.22 4197.78 4557.68 5831.5 5600.7 7547.6 TRUE FALSE 6451.49323 5398.184774 4016.280486 4284.106811 4831.444355 4942.197343 5422.475987 5336.077676 6138.67226 6009.394977 1.073567847 0.898290892 0.668333584 0.71290152 0.803981827 0.822411801 0.902333098 0.887955892 1.021512529 1 12.55300403 -8.421042488 1.325578918 1.01171878 0.820604893 0.285576517 0.105096179 0.615109432 1.897516723 0.101247855 0.035568338 3.79E-09 8.421042488 -0.191113887 SSS(ph)MSSLTGAYASGIPSSSR ddPTM_K562_Paclitaxel_30min_R1 4 SSSMSSLTGAYASGIPSSSR 20 0 Q96HA1;Q96HA1-2;Q96HA1-3 Q96HA1 POM121 Nuclear envelope pore membrane protein POM 121 1 SS(0.001)S(0.934)MS(0.065)SLTGAYASGIPSSSR;S(0.066)S(0.066)S(0.866)MS(0.002)SLTGAYASGIPSSSR;S(0.013)S(0.013)S(0.751)MS(0.214)S(0.01)LTGAYASGIPSSSR;S(0.002)S(0.006)S(0.986)MS(0.005)S(0.001)LTGAYASGIPSSSR 346.63 0 180073900 7421.6 7177 9643.7 7689.1 6223.4 6908.9 6474.8 7753.5 7232.5 9377.5 TRUE FALSE 7525.525298 7960.609131 7209.028663 7195.955541 7071.132443 8134.096409 7703.359499 7094.791779 7927.213941 7466.360353 1.007924202 1.066196749 0.965534521 0.963783584 0.947065519 1.089432605 1.031742259 0.95023431 1.061723995 1 12.86618942 -7.234224525 24.98855465 1.023836041 0.991501598 0.135032664 0.045883004 1905.988432 1750070.395 0.015953945 0.015946545 5.83E-08 7.234224525 -0.032334442 SSS(ph)MSSLTGAYTSGIPSSSR ddPTM_K562_Paclitaxel_30min_R1 3 SSSMSSLTGAYTSGIPSSSR 20 0 A8CG34-2;A8CG34 A8CG34-2 POM121C Nuclear envelope pore membrane protein POM 121C 1 SS(0.008)S(0.989)MS(0.003)SLTGAYTSGIPSSSR;S(0.004)S(0.004)S(0.746)MS(0.233)S(0.012)LT(0.001)GAYTSGIPSSSR;S(0.006)S(0.016)S(0.964)MS(0.012)S(0.002)LTGAYTSGIPSSSR 147.6 1.02E-12 39907500 6425.5 6332.3 8825.2 5686.2 5352.9 5394.5 5017.2 6228.2 5393.3 6727.8 TRUE FALSE 6515.476824 7023.681928 6597.169111 5321.512582 6082.055605 6351.138832 5969.187508 5699.075535 5911.350563 5356.670667 1.21632955 1.311202866 1.231580122 0.993436579 1.135417124 1.185650421 1.114346556 1.063921209 1.103549374 1 12.38712089 -2 0.188504867 1.017135705 2.184132622 0.49767518 0.06882 49.16281333 0.57096788 0.152640277 16.65895548 0.01 2 1.166996917 SSS(ph)NY(ph)CT(ph)T(ph)RPPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 3 SSSNYCTTRPPSR 13 1 A8K8P3-4 A8K8P3-4 5 S(0.216)S(0.189)S(0.597)NY(0.999)CT(1)T(1)RPPS(1)R;S(0.095)S(0.117)S(0.788)NY(1)CT(1)T(1)RPPS(1)R;S(0.2)S(0.239)S(0.563)NY(1)CT(1)T(1)RPPS(0.999)R 62.68 0.021046 2662721000 176.51 170.35 481.73 289.1 251.913 201.04 57.046 145.17 340 152.12 TRUE FALSE 178.9816846 188.9493891 360.1113035 270.55842 286.2278155 236.6916213 67.8701807 132.8369024 372.6585192 121.1178605 1.47774807 1.560045631 2.973230389 2.233844116 2.363217236 1.954225581 0.560364759 1.096757339 3.076825479 1 6.920267816 -7.540898707 24.97498346 1.415227737 2.145441117 0.167511751 0.727634092 434.3145898 601938.213 0.28355689 0.219681699 2.88E-08 7.540898707 0.73021338 SSS(ph)PAPADIAQTVQEDLR ddPTM_K562_Paclitaxel_30min_R1 14 SSSPAPADIAQTVQEDLR 18 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 1 S(0.009)S(0.051)S(0.94)PAPADIAQTVQEDLR;SS(0.008)S(0.992)PAPADIAQTVQEDLR;S(0.097)S(0.367)S(0.536)PAPADIAQTVQEDLR;S(0.026)S(0.026)S(0.949)PAPADIAQTVQEDLR;S(0.007)S(0.007)S(0.986)PAPADIAQTVQEDLR;S(0.019)S(0.112)S(0.87)PAPADIAQTVQEDLR;S(0.005)S(0.005)S(0.99)PAPADIAQTVQEDLR;SS(0.003)S(0.997)PAPADIAQTVQEDLR;S(0.084)S(0.084)S(0.832)PAPADIAQTVQEDLR;S(0.001)S(0.094)S(0.905)PAPADIAQTVQEDLR;SS(0.004)S(0.996)PAPADIAQTVQEDLR;S(0.003)S(0.003)S(0.993)PAPADIAQTVQEDLR;S(0.037)S(0.037)S(0.892)PAPADIAQT(0.034)VQEDLR;S(0.002)S(0.078)S(0.92)PAPADIAQTVQEDLR 281.65 2.94E-134 20772914200 21518.36 21191.38 28520.57 26556.31 20811.52 19520.18 19374.53 23925.69 18408.64 26272.3 TRUE FALSE 21819.68343 23505.12653 21320.19937 24853.10714 23646.40137 22981.80985 23050.74593 21893.0533 20176.87212 20917.99084 1.04310608 1.123679932 1.019227876 1.188121141 1.13043368 1.098662392 1.101957932 1.046613581 0.964570273 1 14.35245667 -8.511036511 2.869566653 0.98279812 1.10289689 0.52787158 0.04461804 0.210439732 3.367194372 0.034198956 0.012018702 3.08E-09 8.511036511 0.12009877 SSS(ph)PATEQSWMENDFDELREEGFR ddPTM_K562_Paclitaxel_30min_R1 2 SSSPATEQSWMENDFDELREEGFR 24 1 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 S(0.386)S(0.11)S(0.46)PAT(0.02)EQS(0.025)WMENDFDELREEGFR;S(0.028)S(0.028)S(0.59)PAT(0.001)EQS(0.353)WMENDFDELREEGFR 123.71 4.50E-10 71013000 719.99 537.68 887.81 793.36 653.97 622.95 664.88 796.91 746.91 975.6 TRUE FALSE 730.0720814 596.3857207 663.6713852 742.4774405 743.0517858 733.4214358 791.0375091 729.2075213 818.6540428 776.7721845 0.93987928 0.767774301 0.854396435 0.955849676 0.956589075 0.944191168 1.018364876 0.938766264 1.053917814 1 9.60134773 -6.317457312 3.158528026 0.980390126 0.843217653 0.569590271 0.05088777 0.172647625 3.429482027 0.014214973 0.02345431 4.81E-07 6.317457312 -0.137172473 SSS(ph)PCRTPEPDNDAHLR ddPTM_K562_Paclitaxel_30min_R1 3 SSSPCRTPEPDNDAHLR 17 1 Q9Y2K6 Q9Y2K6 USP20 Ubiquitin carboxyl-terminal hydrolase 20 1 S(0.299)S(0.299)S(0.402)PCRT(0.001)PEPDNDAHLR;S(0.13)S(0.13)S(0.66)PCRT(0.079)PEPDNDAHLR;S(0.021)S(0.021)S(0.958)PCRTPEPDNDAHLR 130.27 3.64E-07 155392600 2072.3 1915.33 2473.47 2289.47 2078.21 1912.79 1940.94 2003.49 2111.51 2470.57 TRUE FALSE 2101.318594 2124.452207 1849.011907 2142.633641 2361.297386 2251.99645 2309.223233 1833.281019 2314.32997 1967.066478 1.068249913 1.080010376 0.939984453 1.089253294 1.200415651 1.144850199 1.173942649 0.931987322 1.176538768 1 10.94183 -5.0034778 17.52983354 1.083518975 1.054994086 0.001687402 0.092108679 31338603.72 1130126482 0.023332878 16897075.75 9.92E-06 5.0034778 -0.028524889 SSS(ph)PELVTHLK ddPTM_K562_Paclitaxel_30min_R1 1 SSSPELVTHLK 11 0 E9PNR6;H0YE29;Q07960 E9PNR6 ARHGAP1 Rho GTPase-activating protein 1 1 S(0.189)S(0.189)S(0.623)PELVTHLK 108.32 0.0042194 23487000 5636.9 4729.2 10169 7228.4 5500.7 4742.2 4943.3 7343.9 3197.7 8830.4 TRUE FALSE 5715.833991 5245.550049 7601.710181 6764.802777 6249.988468 5583.162586 5881.265369 6719.989856 3504.853373 7030.759633 0.81297531 0.746085818 1.081207519 0.962172387 0.888949245 0.794105172 0.836504969 0.955798549 0.498502801 1 12.77946486 -7.170872088 5.365946107 0.815632549 0.904804719 0.068669069 0.149410119 0.673778366 30.94925037 0.04962253 0.049582477 6.75E-08 7.170872088 0.08917217 SSS(ph)PELVTHLKWDDPYYDIAR ddPTM_K562_Paclitaxel_30min_R1 2 SSSPELVTHLKWDDPYYDIAR 21 1 E9PNR6;H0YE29;Q07960 E9PNR6 ARHGAP1 Rho GTPase-activating protein 1 1 S(0.31)S(0.31)S(0.38)PELVTHLKWDDPYYDIAR;S(0.02)S(0.02)S(0.48)PELVT(0.48)HLKWDDPYYDIAR 123.54 2.21E-07 36578000 4104.1 3390.49 7100.5 4667.4 3553.03 3696.99 3519.68 4835.2 4765.7 5799.5 TRUE FALSE 4161.570062 3760.675164 5307.890957 4368.053855 4037.012839 4352.599268 4187.520906 4424.41958 5223.466779 4617.558717 0.901248975 0.814429311 1.149501562 0.945966066 0.874274284 0.942619149 0.906869011 0.95817289 1.131218269 1 12.17291459 -8.629464846 6.714551793 1.063883769 0.935649583 0.264962919 0.086623126 0.29377581 16.24651522 0.060674523 0.022357867 2.35E-09 8.629464846 -0.128234185 SSS(ph)PGKPQAVSSLNSSHSR ddPTM_K562_Paclitaxel_30min_R1 3 SSSPGKPQAVSSLNSSHSR 19 1 Q9UHB7;Q9UHB7-2;Q9UHB7-3 Q9UHB7 AFF4 AF4/FMR2 family member 4 1 S(0.13)S(0.13)S(0.74)PGKPQAVSSLNSSHSR;S(0.159)S(0.159)S(0.682)PGKPQAVSSLNSSHSR;S(0.143)S(0.143)S(0.714)PGKPQAVSSLNSSHSR 121.51 1.21E-05 105329000 6894.9 5922.57 12090.5 7972.7 5815.05 5484 5071.19 7207.5 6806 8969.3 TRUE FALSE 6991.449873 6569.216221 9038.103742 7461.366706 6607.15826 6456.510401 6033.421829 6595.177887 7459.74671 7141.351737 0.979009315 0.919884143 1.265601258 1.04481154 0.925197148 0.904102002 0.844857116 0.923519542 1.044584693 1 12.80198146 -6.738073598 6.424220435 0.929781226 1.058967672 0.236595987 0.097257675 0.235548966 33.24744465 0.030561291 0.03840057 1.83E-07 6.738073598 0.129186446 SSS(ph)PIPLTPSK ddPTM_K562_Paclitaxel_30min_R1 1 SSSPIPLTPSK 11 0 A0A3B3IRN2;A0A3F2YNX2;A0A3B3ITF3;A0A3B3ITL5;A0A3B3IT59;Q8N5Y2-4;Q8N5Y2-6;Q8N5Y2-2;Q8N5Y2-3;Q8N5Y2 A0A3B3IRN2 MSL3 Male-specific lethal 3 homolog 1 S(0.017)S(0.074)S(0.909)PIPLTPSK 149.49 0.00040677 25082000 4929.5 4119.4 8176.7 5149 4582.3 3962.8 3361.5 5080.9 3219.6 5494.6 TRUE FALSE 4998.528209 4569.170023 6112.390957 4818.766186 5206.486839 4665.54694 3999.327077 4649.245831 3528.856966 4374.797504 1.142573617 1.044430061 1.397182601 1.101483253 1.190109219 1.06646009 0.914174216 1.06273395 0.806633213 1 12.09500053 -7.510815843 2.933491622 0.95073529 1.176217734 0.510718635 0.105371838 0.223501355 3.90728905 0.04153611 0.033159899 3.08E-08 7.510815843 0.225482443 SSS(ph)PLQLNLLQEEMPRPSES(ph)PDQMRR ddPTM_K562_Paclitaxel_30min_R1 1 SSSPLQLNLLQEEMPRPSESPDQMRR 26 2 A0A087WV69;P56645;P56645-2 A0A087WV69 PER3 Period circadian protein homolog 3 2 S(0.16)S(0.16)S(0.679)PLQLNLLQEEMPRPS(0.24)ES(0.76)PDQMRR 60.272 0.0028622 7079700 211.11 265.23 373.46 389.63 363.67 363.07 303.71 357.89 188.94 507.53 TRUE FALSE 214.0661913 294.1887084 279.1754041 364.6408757 413.208011 427.4553667 361.337387 327.4850106 207.0885312 404.0951074 0.529742101 0.728018486 0.690865588 0.902363996 1.022551383 1.057808815 0.894188968 0.810415678 0.51247473 1 8.658551074 -5.887222954 1.647430546 0.889310536 0.583475158 0.345280695 0.150521309 0.527483795 2.655639131 0.048341554 0.176483199 1.30E-06 5.887222954 -0.305835378 SSS(ph)PLQLNLLQEEMPRPSESPDQMRR ddPTM_K562_Paclitaxel_30min_R1 1 SSSPLQLNLLQEEMPRPSESPDQMRR 26 2 A0A087WV69;P56645;P56645-2 A0A087WV69 PER3 Period circadian protein homolog 3 1 S(0.173)S(0.173)S(0.653)PLQLNLLQEEMPRPSESPDQMRR 58.755 0.0030747 28665000 524.32 547.36 827.49 613.56 524.6 560.41 576.12 681.83 605.79 523.66 TRUE FALSE 531.6620977 607.1226159 618.5799152 574.2090078 596.0594016 659.790845 685.4357625 623.9042857 663.9788362 416.9378046 1.275159249 1.456146718 1.483626355 1.377205429 1.429612271 1.582468267 1.643976044 1.496396534 1.59251291 1 8.70368838 -7.027052792 19.92437861 1.505473248 1.407687701 0.000176042 0.177448772 173.8532618 128042.132 0.054828693 0.055140004 9.40E-08 7.027052792 -0.097785547 SSS(ph)PRGEASSLNGESH ddPTM_K562_Paclitaxel_30min_R1 4 SSSPRGEASSLNGESH 16 1 Q8IY57-3;Q8IY57;Q8IY57-5 Q8IY57-3 YAF2 YY1-associated factor 2 1 SS(0.002)S(0.997)PRGEASSLNGESH;S(0.001)S(0.023)S(0.972)PRGEAS(0.004)SLNGESH;S(0.044)S(0.147)S(0.807)PRGEAS(0.002)SLNGESH;S(0.158)S(0.158)S(0.673)PRGEAS(0.003)S(0.007)LNGESH 262.83 1.01E-93 237100000 5928.7 5380.06 7401.2 6135.4 5505.8 4971.7 5550.3 6916.9 5899.24 6117.4 TRUE FALSE 6011.720092 5967.473145 5532.675523 5741.902905 6255.783174 5853.361189 6603.44045 6329.266171 6465.888361 4870.670522 1.234269504 1.22518514 1.135916605 1.178873192 1.284378228 1.201756752 1.355755931 1.299465062 1.327515037 1 12.24990468 -6.757345696 24.95582363 1.263179541 1.191702497 0.043534939 0.096809812 232.2226757 1415661.715 0.027666931 0.034411842 1.75E-07 6.757345696 -0.071477044 SSS(ph)PTLTPSQEGSPVFAGFEGR ddPTM_K562_Paclitaxel_30min_R1 2 SSSPTLTPSQEGSPVFAGFEGR 22 0 P0C860 P0C860 MSL3P1 Putative male-specific lethal-3 protein-like 2 1 S(0.013)S(0.016)S(0.884)PT(0.005)LT(0.081)PS(0.001)QEGSPVFAGFEGR;S(0.137)S(0.137)S(0.669)PT(0.038)LT(0.012)PS(0.007)QEGSPVFAGFEGR 145.17 7.19E-25 0 870.03 625.49 1049.51 766.54 552.81 753.5 781.37 958.44 522.04 931.75 TRUE FALSE 882.2131043 693.7831135 784.5482203 717.3775553 628.1120812 887.1226453 929.6308785 877.0145396 572.1842745 741.8588386 1.189192685 0.935195589 1.057543807 0.967000079 0.846673314 1.195810576 1.253110201 1.1821852 0.771284569 1 9.535000886 -7.282529619 24.97141257 1.102654175 0.997030853 0.058618009 0.150301316 2008.319151 2377895.261 0.053655883 0.04736988 5.22E-08 7.282529619 -0.105623322 SSS(ph)PTQYGLTK ddPTM_K562_Paclitaxel_30min_R1 1 SSSPTQYGLTK 11 0 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 S(0.013)S(0.151)S(0.836)PTQYGLTK 208.51 3.31E-09 169360000 4722.8 4513.2 8357.9 5695.3 4266 3972.2 3687.2 6079.8 5217.2 6723.5 TRUE FALSE 4788.933771 5005.966439 6247.844776 5330.028949 4847.101424 4676.613898 4386.826952 5563.283041 5718.335371 5353.247009 0.894584868 0.935127116 1.167113112 0.995662808 0.905450732 0.873603234 0.819470304 1.039235259 1.068199424 1 12.38619851 -8.450481478 24.99988877 1.040645968 0.946739174 0.187951875 0.089148954 265.5436792 91695.87233 0.054186478 0.026030319 3.54E-09 8.450481478 -0.093906794 SSS(ph)PVGLAK ddPTM_K562_Paclitaxel_30min_R1 3 SSSPVGLAK 9 0 B1AKL4;Q9NRA8-2;Q9NRA8;Q9NRA8-3 B1AKL4 EIF4ENIF1 Eukaryotic translation initiation factor 4E transporter 1 S(0.001)S(0.028)S(0.971)PVGLAK;S(0.018)S(0.2)S(0.782)PVGLAK;S(0.009)S(0.001)S(0.99)PVGLAK 146.11 0.00041925 187818000 17955.1 15919.8 31872.8 21991.9 16811.6 14593.3 13561.5 19838.3 19428.3 23396.6 TRUE FALSE 18206.5268 17657.9776 23826.11744 20581.43797 19101.62454 17181.21685 16134.72383 18152.91259 21294.47502 18628.36008 0.977355318 0.947908325 1.279023883 1.104844328 1.025405589 0.92231505 0.86613764 0.974477223 1.143121291 1 14.18521305 -6.988043566 5.182847317 0.972229017 1.081378555 0.151474648 0.10584033 0.332578674 26.65490169 0.036458477 0.039959336 1.03E-07 6.988043566 0.109149538 SSS(ph)PVQVEEEPVR ddPTM_K562_Paclitaxel_30min_R1 2 SSSPVQVEEEPVR 13 0 Q8IZ21-3;Q8IZ21;Q8IZ21-2;A0A0J9YVR0 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 S(0.004)S(0.076)S(0.92)PVQVEEEPVR;S(0.008)S(0.008)S(0.985)PVQVEEEPVR 257.48 1.29E-69 950790000 3383.7 3350.3 4945.4 3985.3 3867 3056.1 3052.8 3881.4 3346.7 3861.9 TRUE FALSE 3431.08224 3716.097084 3696.872606 3729.700696 4393.750869 3598.056425 3632.052863 3551.650843 3668.165488 3074.84266 1.115856198 1.208548695 1.202296512 1.21297286 1.428935186 1.170159525 1.181215842 1.155067506 1.192960387 1 11.58629687 -9.550936169 0.70923254 0.997438201 1.223905598 0.39849835 0.078062058 1.978605337 1.604010222 0.096097871 0.030421189 2.81E-10 9.550936169 0.226467396 SSS(ph)PVTELAS(ph)RSPIR ddPTM_K562_Paclitaxel_30min_R1 1 SSSPVTELASRSPIR 15 1 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 S(0.211)S(0.262)S(0.526)PVT(0.007)ELAS(0.837)RS(0.156)PIR 88.548 0.015109 25361000 2106.3 1826.3 2592.1 2107 1881.7 1818.1 1675.5 1874.8 1588.6 2411.5 TRUE FALSE 2135.794698 2025.70161 1937.692296 1971.866451 2138.019397 2140.514508 1993.417378 1715.524038 1741.192128 1920.034976 1.112372808 1.055033703 1.009196353 1.026995068 1.113531484 1.114830997 1.038219305 0.893485827 0.90685438 1 10.90691688 -8.148800063 4.797475718 0.925961673 1.068652303 0.671411359 0.043167118 0.134947846 4.765465178 0.022324529 0.012545932 7.10E-09 8.148800063 0.14269063 SSS(ph)PVTELASR ddPTM_K562_Paclitaxel_30min_R1 4 SSSPVTELASR 11 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.009)S(0.241)S(0.749)PVTELASR;S(0.008)S(0.008)S(0.981)PVT(0.003)ELASR;SS(0.005)S(0.995)PVTELASR;SSS(0.999)PVTELASR 216.91 1.80E-14 311886000 9160.99 8406.5 11937.2 10519.6 9402.5 9440.7 8692.29 10194.6 7828.8 11406.2 TRUE FALSE 9289.272124 9324.350099 8923.506223 9844.91994 10683.27969 11114.87559 10341.60665 9328.505097 8580.79122 9081.610179 1.022866203 1.026728731 0.982590757 1.084050047 1.176364045 1.223888206 1.138741528 1.027186249 0.944853506 1 13.1487324 -6.365804158 5.896883646 1.098850781 1.012764573 0.141230123 0.079457429 0.427283549 20.2155553 0.024957785 0.03730732 4.31E-07 6.365804158 -0.086086207 SSS(ph)QRSPSPGPNHTSNSSNASNATVVPQNSSAR ddPTM_K562_Paclitaxel_30min_R1 1 SSSQRSPSPGPNHTSNSSNASNATVVPQNSSAR 33 1 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 S(0.047)S(0.047)S(0.373)QRS(0.124)PS(0.104)PGPNHT(0.085)S(0.085)NS(0.038)S(0.038)NAS(0.046)NAT(0.012)VVPQNS(0.001)S(0.001)AR 40.753 0.027739 840520 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 SSS(ph)QSGSGPSSPDSVLRPR ddPTM_K562_Paclitaxel_30min_R1 1 SSSQSGSGPSSPDSVLRPR 19 1 O75427;H7C5D9 O75427 LRCH4 Leucine-rich repeat and calponin homology domain-containing protein 4 1 S(0.083)S(0.083)S(0.827)QS(0.004)GS(0.002)GPSSPDSVLRPR 107.69 0.0016329 6265600 1895.4 1448 2666.8 2130.1 1659.9 1639.7 1675.3 2189.6 1973.5 2237.8 TRUE FALSE 1921.941448 1606.097537 1993.533357 1993.48492 1886.006482 1930.477772 1993.179429 2003.579813 2163.063493 1781.735132 1.078690886 0.901423286 1.118871892 1.118844706 1.058522363 1.083481904 1.118673249 1.124510471 1.21402079 1 10.79906717 -5.788884838 24.99912858 1.107671779 0.990057026 0.331093456 0.065016082 195.8773372 178417.5907 0.016261581 0.033863638 1.63E-06 5.788884838 -0.117614753 SSS(ph)SASQSNHSCTSMPSSPATPASGTK ddPTM_K562_Paclitaxel_30min_R1 1 SSSSASQSNHSCTSMPSSPATPASGTK 27 0 H3BPE1;H3BQK9;Q9UPN3;H0Y390;A0A590UJG2;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3-5;H0Y6T5;H0Y4F5;H0Y314 H3BPE1 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 S(0.066)S(0.066)S(0.188)S(0.184)AS(0.184)QS(0.184)NHS(0.059)CT(0.035)S(0.035)MPSSPATPASGTK 55.496 0.0057124 21334000 1928.6 1923.1 2875.8 1967.9 1741.4 1768 2291.3 3075.4 2325.2 4505.1 TRUE FALSE 1955.60635 2133.070562 2149.768723 1841.687702 1978.608162 2081.529976 2726.062214 2814.125574 2548.545849 3586.958147 0.545199099 0.594673948 0.59932919 0.513439975 0.551611723 0.580305064 0.759992758 0.784543744 0.710503369 1 11.8085452 -8.788710806 0.504498636 0.998730125 0.544049877 0.859038856 0.053652324 0.340198419 0.221448741 0.064272378 0.034260301 1.63E-09 8.788710806 -0.454680248 SSS(ph)SFTPFIDPR ddPTM_K562_Paclitaxel_30min_R1 1 SSSSFTPFIDPR 12 0 C9J840;A0A0D9SG62;G5E948;A0A0D9SEY1;O95819-2;O95819-6;O95819-3;E7EX83;H7C0P6;E7ENQ1;G3XAA2;H7C360;E7EN19;O95819-4;O95819;O95819-5 C9J840 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 S(0.001)S(0.001)S(0.495)S(0.495)FT(0.008)PFIDPR 113.47 0.0048052 9019900 1045.4 900.92 1337.9 1214.2 1040.4 1010.4 926.76 1058.7 1208.3 1268.6 TRUE FALSE 1060.038825 999.2854923 1000.130598 1136.326647 1182.120094 1189.580253 1102.607872 968.7568268 1324.362614 1010.058624 1.049482476 0.989334152 0.990170842 1.125010588 1.170348004 1.177733872 1.091627601 0.959109505 1.311174008 1 9.980223314 -6.265672187 24.44497079 1.12099291 1.007629653 0.226767648 0.092703556 374.8079889 2164565.658 0.02515112 0.038835038 5.42E-07 6.265672187 -0.113363257 SSS(ph)SPELQTLQDILGDPGDKADVGR ddPTM_K562_Paclitaxel_30min_R1 1 SSSSPELQTLQDILGDPGDKADVGR 25 1 P49815;A0A2R8Y5F1;A0A2R8YGD6;A0A2R8Y7C8;A0A2R8YDR3;A0A2R8Y7X5;A0A2R8YDZ2;H3BMQ0;X5D2U8;A0A2R8YGU4;A0A2R8Y6C9;P49815-5;P49815-3;P49815-2;P49815-6;P49815-7;P49815-4;H3BQK4;A0A2R8Y670 P49815 TSC2 Tuberin 1 S(0.142)S(0.142)S(0.668)S(0.047)PELQT(0.001)LQDILGDPGDKADVGR 85.937 0.00010981 7037200 609.74 771.01 1374.8 636.99 518.44 548.59 578.4 672.25 623.36 691.33 TRUE FALSE 618.2782412 855.1914792 1027.714737 596.1363125 589.0603053 645.8747339 688.1483805 615.1381664 683.2365132 550.4365665 1.123250668 1.553660369 1.867090232 1.083024546 1.070169282 1.173386314 1.250186529 1.11754597 1.241262944 1 9.104432504 -6.296779666 24.99640588 1.142417239 1.518566598 0.47899144 0.181925088 501.8546037 354963.7239 0.051776553 0.076800567 5.05E-07 6.296779666 0.376149359 SSS(ph)TGNLLDKDDLAIPPPDYGAASR ddPTM_K562_Paclitaxel_30min_R1 2 SSSTGNLLDKDDLAIPPPDYGAASR 25 1 I3L3C6;B4DWA1;I3L4C2;Q9UQB8-3;Q9UQB8-5;Q9UQB8-4;Q9UQB8-6;Q9UQB8-2;Q9UQB8 I3L3C6 BAIAP2 Brain-specific angiogenesis inhibitor 1-associated protein 2 1 S(0.28)S(0.28)S(0.42)T(0.02)GNLLDKDDLAIPPPDYGAASR;S(0.353)S(0.108)S(0.414)T(0.125)GNLLDKDDLAIPPPDYGAASR 86.492 0.00010821 96849000 3750 3111 5528 2986.9 2425.7 2185 1567.53 2338.4 1836.05 2567 TRUE FALSE 3802.51157 3450.669501 4132.388031 2795.333603 2756.121407 2572.479071 1864.960634 2139.738324 2012.410806 2043.843991 1.860470558 1.688323334 2.021870578 1.36768443 1.348498917 1.258647471 0.912477001 1.046918617 0.984620556 1 10.99706936 -6.791078752 0.969499083 0.99027377 1.872016117 0.877900106 0.129542563 0.177173807 0.358834629 0.06115771 0.092973164 1.62E-07 6.791078752 0.881742347 SSS(ph)TSDILEPFTVER ddPTM_K562_Paclitaxel_30min_R1 2 SSSTSDILEPFTVER 15 0 A0A1B0GUI1;Q6GYQ0-3;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 SSS(1)TSDILEPFTVER;S(0.016)S(0.002)S(0.982)TSDILEPFTVER 380.66 0 145756000 5612.9 5229.8 7120.5 5879.5 5108.1 4784.5 4859.5 5674.8 5281.2 6465.1 TRUE FALSE 5691.497917 5800.80725 5322.84171 5502.415186 5803.909701 5632.963897 5781.564757 5192.690319 5788.482857 5147.509071 1.105680017 1.126915401 1.034061647 1.068947157 1.12751811 1.094308688 1.123177187 1.008777303 1.124521157 1 12.32965875 -14.99999999 0.271454022 0.380542985 1.095277043 0.318546306 0.039465096 261.5315242 2.539869571 90.79105284 0.04796366 1.00E-15 14.99999999 0.714734057 SSS(ph)VGSSSSYPIS(ph)PAVSR ddPTM_K562_Paclitaxel_30min_R1 2 SSSVGSSSSYPISPAVSR 18 0 Q15149-4;H0YDN1;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149 Q15149-4 PLEC Plectin 2 S(0.014)S(0.022)S(0.963)VGSSSSYPIS(1)PAVSR;S(0.05)S(0.075)S(0.873)VGS(0.002)SSSYPIS(0.998)PAVS(0.001)R 229.37 8.18E-41 43154000 4445.6 4325.9 5155.3 4397.1 3754.2 4192.1 4092.2 4897.8 3353.7 5620.4 TRUE FALSE 4507.852116 4798.216391 3853.780755 4115.089687 4265.585599 4935.510075 4868.673587 4481.701319 3675.83787 4474.959395 1.007350395 1.072236856 0.861187871 0.919581458 0.953212135 1.102917287 1.087981623 1.001506589 0.821423737 1 12.12765888 SSS(ph)VGSSSSYPISPAVSR ddPTM_K562_Paclitaxel_30min_R1 2 SSSVGSSSSYPISPAVSR 18 0 Q15149-4;H0YDN1;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149 Q15149-4 PLEC Plectin 1 SS(0.001)S(0.999)VGSSSSYPISPAVSR;S(0.002)S(0.083)S(0.891)VGS(0.013)S(0.008)S(0.002)SYPISPAVSR 221.78 2.19E-32 637820000 4219.1 4188 6079.3 4711.3 4282.9 4691.5 3965.1 4895.4 3615.1 6245.8 TRUE FALSE 4278.180417 4645.260003 4544.505527 4409.138305 4866.30349 5523.471653 4717.457026 4479.505214 3962.346508 4972.902532 0.860298466 0.934114428 0.91385373 0.886632762 0.97856402 1.110713837 0.948632513 0.90078283 0.796787486 1 12.27987244 -4.455798158 0.823224061 0.94867024 0.632259483 0.094301112 0.077189987 22.5721882 4.501123749 0.029981351 8.883333234 3.50E-05 4.455798158 -0.316410757 SSS(ph)VTSIDKESR ddPTM_K562_Paclitaxel_30min_R1 1 SSSVTSIDKESR 12 1 H0Y332;Q5T5C0-3;Q5T5C0-2;Q5T5C0;Q5JRH0 H0Y332 STXBP5 Syntaxin-binding protein 5 1 S(0.004)S(0.004)S(0.983)VT(0.007)S(0.002)IDKESR 81.185 0.02129 21791000 865.89 829.78 1722.8 1152.9 850.18 860.07 681.88 1193.2 905.93 1516.9 TRUE FALSE 878.0151315 920.3781865 1287.857833 1078.958154 965.9889097 1012.591339 811.2631703 1091.830212 992.9486243 1207.754947 0.726981192 0.762057062 1.06632379 0.893358505 0.799821944 0.838407941 0.671711734 0.904016344 0.822144117 1 10.23811205 -10.15508236 1.515294994 1.000262245 0.834705208 0.192130843 0.10332591 96.48985933 121.6027169 0.248569374 0.029956701 7.00E-11 10.15508236 -0.165557037 SSSCGDTELLGQATLPVGS(ph)PSRPLSR ddPTM_K562_Paclitaxel_30min_R1 3 SSSCGDTELLGQATLPVGSPSRPLSR 26 1 O14523-2;O14523;E9PK05 O14523-2 C2CD2L C2 domain-containing protein 2-like 1 SSSCGDTELLGQATLPVGS(0.464)PS(0.464)RPLS(0.072)R;SSSCGDTELLGQATLPVGS(0.465)PS(0.465)RPLS(0.07)R;SSSCGDTELLGQATLPVGS(0.682)PS(0.172)RPLS(0.146)R 90.378 4.36E-05 181454000 2362.64 1653.79 2013.27 2314.67 2107.32 1680.28 1811.69 1923.14 1908.76 2212.26 TRUE FALSE 2395.724249 1834.356385 1504.995089 2166.217426 2394.372661 1978.254066 2155.44872 1759.757253 2092.104927 1761.400198 1.36012489 1.041419427 0.854431089 1.229826946 1.359357552 1.123114479 1.223713227 0.999067251 1.187751046 1 10.78250702 -9.546010898 0.805535663 1.000462062 1.153356982 0.085240923 0.149674364 5.608318903 5.626514176 0.168286295 0.053841044 2.84E-10 9.546010898 0.152894921 SSSFS(ph)LPSR ddPTM_K562_Paclitaxel_30min_R1 1 SSSFSLPSR 9 0 Q14153-2;Q14153 Q14153-2 FAM53B Protein FAM53B 1 S(0.001)SS(0.014)FS(0.985)LPSR 135.43 0.00082112 87484000 2864.5 2232.4 2893.9 2305.1 1917.6 1980.4 2222.1 2244.7 2058.6 2846.4 TRUE FALSE 2904.611838 2476.140981 2163.299154 2157.261203 2178.809585 2331.596134 2643.731875 2053.998724 2256.337728 2266.302118 1.281652528 1.092590861 0.954550206 0.951885976 0.961394144 1.028810817 1.166539913 0.906321672 0.995603239 1 11.14612448 -5.359652516 2.757959408 0.997199988 1.305761567 0.633662133 0.066196866 0.233052026 2.707095969 0.018039087 0.145168098 4.37E-06 5.359652516 0.308561579 SSSGLQSSRS(ph)NPSIQATLNK ddPTM_K562_Paclitaxel_30min_R1 2 SSSGLQSSRSNPSIQATLNK 20 1 Q6UUV7;Q6UUV7-3 Q6UUV7 CRTC3 CREB-regulated transcription coactivator 3 1 S(0.007)S(0.007)S(0.02)GLQS(0.225)S(0.047)RS(0.693)NPS(0.001)IQATLNK;S(0.002)S(0.002)S(0.001)GLQS(0.118)S(0.246)RS(0.63)NPS(0.001)IQATLNK 81.643 0.0025131 25440000 2321.11 2063.2 3278.4 2423.4 1876.86 1846.13 1347.83 2138.44 2937.7 2694.5 TRUE FALSE 2353.612701 2288.467153 2450.727373 2267.973971 2132.520108 2173.515235 1603.573706 1956.766174 3219.879211 2145.359421 1.097071511 1.066705714 1.142338831 1.057153384 0.994015309 1.013124054 0.747461563 0.91209247 1.500857702 1 11.06700365 -6.549008696 4.735242938 1.009336861 1.099104986 0.026684007 0.179704948 0.718406146 40.2948579 0.054735388 0.073971066 2.82E-07 6.549008696 0.089768124 SSSGSWGNGGHPS(ph)PSRNYGDGTPYDHMTSR ddPTM_K562_Paclitaxel_30min_R1 2 SSSGSWGNGGHPSPSRNYGDGTPYDHMTSR 30 1 A0A1B0GVB8;P15884-12;P15884-15;P15884-5;P15884-4;P15884-10;P15884-13;P15884-14;P15884;P15884-3;A0A1B0GVR6;H3BTP3;H3BPJ7;E9PH57;H3BT24;H3BP59;G0LNT4;A0A0D9SEX8;H3BMC8;H3BTZ0;A0A0D9SGE5;A0A1B0GTP2;H3BTC3;H3BUQ3;A0A0D9SG55;A0A0D9SG61;A0A075B723 A0A1B0GVB8 TCF4 Transcription factor 4 1 SSS(0.001)GS(0.002)WGNGGHPS(0.497)PS(0.497)RNY(0.003)GDGTPYDHMTSR;SSSGSWGNGGHPS(0.854)PS(0.142)RNY(0.002)GDGT(0.001)PYDHMTSR 89.968 4.45E-07 99855000 1207.77 940.59 1055.6 1036.85 895.54 1014.96 732.07 963.09 1296.83 974.14 TRUE FALSE 1224.682506 1043.286797 789.1007245 970.3510818 1017.52771 1194.948905 870.9764608 881.2694931 1421.396316 775.6097333 1.578993215 1.345118237 1.017394046 1.25108162 1.311906834 1.540657439 1.122957105 1.136227996 1.832617945 1 9.599187098 -11.27610831 4.571021234 0.999839193 1.327535488 0.162058249 0.233408961 0.000377949 5.99E-05 0.223290274 0.054129427 5.30E-12 11.27610831 0.327696295 SSSGSWGNGGHPSPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 SSSGSWGNGGHPSPSR 16 0 A0A1B0GVB8;P15884-12;P15884-15;P15884-5;P15884-4;P15884-10;P15884-13;P15884-14;P15884;P15884-3;A0A1B0GVR6;H3BTP3;H3BPJ7;E9PH57;H3BT24;H3BP59;G0LNT4;A0A0D9SEX8;H3BMC8;H3BTZ0;A0A0D9SGE5;A0A1B0GTP2;H3BTC3;H3BUQ3;A0A0D9SG55;A0A0D9SG61;A0A075B723 A0A1B0GVB8 TCF4 Transcription factor 4 1 SSSGSWGNGGHPS(0.036)PS(0.964)R 69.763 0.029814 9436900 1271.6 1262.2 1465.6 1388.4 1267.9 1233.4 1250.7 1497.1 1287.8 1601.5 TRUE FALSE 1289.406323 1400.011264 1095.591154 1299.354238 1440.609446 1452.126172 1488.013796 1369.91201 1411.498944 1275.113421 1.011209122 1.09795038 0.859210746 1.019010715 1.129789258 1.138821181 1.166965833 1.074345221 1.106959523 1 10.31640986 -6.671211693 5.265107569 1.111327327 0.991331153 0.36249179 0.068847388 0.214426169 9.680320843 0.020552543 0.026544956 2.13E-07 6.671211693 -0.119996175 SSSHLSPS(ph)EEVR ddPTM_K562_Paclitaxel_30min_R1 1 SSSHLSPSEEVR 12 0 A0A2R8YH03;Q5VWN6;Q5VWN6-2 A0A2R8YH03 FAM208B Protein FAM208B 1 SSS(0.001)HLS(0.317)PS(0.681)EEVR 121.56 0.0022655 8827500 894.11 779 1029.9 729.43 688.24 747.08 633.6 980.52 549.96 841.75 TRUE FALSE 906.6302986 864.0538544 769.8890074 682.6476246 781.98994 879.5641485 753.8222924 897.2187058 602.7861153 670.200888 1.352773944 1.28924606 1.14874364 1.01857165 1.16679932 1.312388814 1.124770656 1.338731001 0.899411096 1 9.388449788 -2 0.023728885 2.45E-08 2.746083188 0.275774028 0.127280472 3430.828485 6.277933614 254.7249214 513.4279108 0.01 2 2.746083164 SSSLEMTPYNTPQLS(ph)PATTPANKK ddPTM_K562_Paclitaxel_30min_R1 2 SSSLEMTPYNTPQLSPATTPANKK 24 1 Q14C86-4;Q14C86-2;Q14C86-6;F8W9S7;Q14C86-3;Q14C86-5;Q14C86;H0Y4E7;H0Y7I9;C9IZ08;B4DGD8;B0QZ65;A0A0A0MQV8 Q14C86-4 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 SSSLEMT(0.002)PY(0.019)NT(0.274)PQLS(0.676)PAT(0.027)T(0.002)PANKK;SSSLEMTPYNTPQLS(0.993)PAT(0.007)TPANKK 116.43 3.59E-09 64853000 2789.4 1960.99 5743.6 2863.2 2208.6 1801.09 1374.99 3320.9 2482.7 3922 TRUE FALSE 2828.460206 2175.09752 4293.557144 2679.567167 2509.448712 2120.488023 1635.887175 3038.768817 2721.174428 3122.694247 0.905775584 0.696545146 1.374952783 0.858094631 0.803616529 0.679057204 0.523870429 0.973124032 0.871418785 1 11.6085756 -4.912107202 19.60433193 0.857561038 3.456584298 0.002308914 0.217618789 4301.037828 1016426.778 0.054750344 29468.7871 1.22E-05 4.912107202 2.59902326 SSSLIQLT(ph)SQNSSPNQQR ddPTM_K562_Paclitaxel_30min_R1 1 SSSLIQLTSQNSSPNQQR 18 0 H7C419;O95639 H7C419 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 1 SSSLIQLT(0.689)S(0.306)QNS(0.003)S(0.001)PNQQR 157.83 4.95E-09 24158000 2403.1 2342.4 3642.7 3109.1 2404.1 2013.6 2108.3 2594.6 2019.8 2900.3 TRUE FALSE 2436.750814 2598.151153 2723.055333 2909.696242 2731.579122 2370.683688 2508.338919 2374.172535 2213.810815 2309.217268 1.055228041 1.125122001 1.179211402 1.26003572 1.182902605 1.026617859 1.086229067 1.028128694 0.958684506 1 11.1731882 -7.266341603 23.78265906 1.025833619 1.165103805 0.605297752 0.056594162 165.6085217 803429.0523 0.021528949 0.019606705 5.42E-08 7.266341603 0.139270186 SSSLIQLTSQNS(ph)SPNQQR ddPTM_K562_Paclitaxel_30min_R1 2 SSSLIQLTSQNSSPNQQR 18 0 H7C419;O95639 H7C419 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 1 SSSLIQLTSQNS(0.55)S(0.449)PNQQR;SSSLIQLT(0.004)S(0.002)QNS(0.68)S(0.314)PNQQR 163.44 1.45E-09 47520000 3683 3247.4 4182.6 4175.1 3061.8 2982.1 3093.3 4051.5 3297 3923.1 TRUE FALSE 3734.573363 3601.962114 3126.6509 3907.327773 3478.868997 3510.933564 3680.237527 3707.299786 3613.691581 3123.570067 1.195610562 1.153155536 1.000986318 1.25091728 1.113747706 1.124013065 1.178215135 1.186879022 1.156910684 1 11.60898018 -11.03455822 5.211666399 0.999999041 1.149682941 0.346889786 0.062193762 9.85E-07 1.82E-07 0.058990056 0.014307057 9.24E-12 11.03455822 0.1496839 SSSLIQLTSQNSS(ph)PNQQR ddPTM_K562_Paclitaxel_30min_R1 1 SSSLIQLTSQNSSPNQQR 18 0 H7C419;O95639 H7C419 CPSF4 Cleavage and polyadenylation specificity factor subunit 4 1 SSSLIQLTSQNS(0.01)S(0.99)PNQQR 192.23 5.46E-13 27383000 1814.9 2152.7 2807.9 2319.6 1875.2 1552.1 1927.7 2480.1 2214.2 2535.7 TRUE FALSE 1840.314199 2387.739066 2099.010917 2170.831238 2130.633987 1827.343142 2293.471012 2269.400025 2426.883803 2018.922948 0.911532657 1.18267964 1.039668661 1.075242242 1.055331997 0.905107916 1.135987391 1.124064703 1.202068561 1 10.97937014 SSSMS(ph)SLTGAYTSGIPSSSR ddPTM_K562_Paclitaxel_30min_R1 1 SSSMSSLTGAYTSGIPSSSR 20 0 A8CG34-2;A8CG34 A8CG34-2 POM121C Nuclear envelope pore membrane protein POM 121C 1 SS(0.001)S(0.022)MS(0.749)S(0.225)LT(0.003)GAYTSGIPSSSR 129.17 5.25E-07 9810700 2399.8 1670.7 2799.1 1922.1 1611.2 1669.3 1864.9 1818.6 1396.5 2268.9 TRUE FALSE 2433.404604 1853.112676 2092.432586 1798.825109 1830.672718 1965.326917 2218.75504 1664.098579 1530.640065 1806.496935 1.347029468 1.025804495 1.158281836 0.995753203 1.013382687 1.087921534 1.228208583 0.921174316 0.84729735 1 10.81897909 -2.5342622 1.138704617 1.02892666 200 0.448107956 0.1041755 1066.623615 2.854541966 0.032960017 552517.3221 0.002922387 2.5342622 198.9710733 SSSMSS(ph)LTGAYTSGIPSSSR ddPTM_K562_Paclitaxel_30min_R1 2 SSSMSSLTGAYTSGIPSSSR 20 0 A8CG34-2;A8CG34 A8CG34-2 POM121C Nuclear envelope pore membrane protein POM 121C 1 SSSMS(0.04)S(0.919)LT(0.04)GAYTSGIPSSSR;SSS(0.001)MS(0.042)S(0.953)LT(0.004)GAYTSGIPSSSR 160.45 2.55E-12 115186000 1440.06 1042.75 1247.22 1389.91 1004.94 1175.39 1184.67 1423.36 1361.79 1685.12 TRUE FALSE 1460.225283 1156.600971 932.3438856 1300.767394 1141.829842 1383.828913 1409.454948 1302.436684 1492.596014 1341.691619 1.088346429 0.862046803 0.694901774 0.969498039 0.851037471 1.031406095 1.05050589 0.970742207 1.112473234 1 10.3898374 -7.270091422 23.90746634 1.032289416 0.884663231 0.331391334 0.098958642 416.8351358 1151801.284 0.034912041 0.031298912 5.37E-08 7.270091422 -0.147626185 SSSPAPADIAQTVQEDLR ddPTM_K562_Paclitaxel_30min_R1 2 SSSPAPADIAQTVQEDLR 18 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 0 ; 168.5 3.43E-09 19421600 863.32 1197.96 1352.35 1173.67 1020.93 904.67 966.05 1104.04 775.94 1109.58 FALSE TRUE 875.4091436 1328.757324 1010.932517 1098.396059 1159.99795 1065.100522 1149.352944 1010.244911 850.472504 883.4469869 0.990901725 1.504060055 1.144304675 1.243307268 1.313036286 1.205619056 1.300986886 1.143526353 0.962675199 1 9.786999755 -8.588628612 3.41070955 0.982005946 1.25008603 0.411737108 0.123672568 0.216567062 4.926425239 0.089644157 0.029972944 2.58E-09 8.588628612 0.268080084 SSSPAT(ph)EQSWMENDFDELREEGFRR ddPTM_K562_Paclitaxel_30min_R1 2 SSSPATEQSWMENDFDELREEGFRR 25 2 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 S(0.025)S(0.029)S(0.084)PAT(0.858)EQS(0.004)WMENDFDELREEGFRR;S(0.213)S(0.213)S(0.175)PAT(0.398)EQSWMENDFDELREEGFRR 71.969 0.00041756 23912000 1201.93 960.73 1470.64 1336.53 1145.53 1299.28 982.7 1169.43 1008.53 1341.22 TRUE FALSE 1218.760728 1065.62575 1099.358743 1250.810948 1301.57058 1529.689065 1169.162195 1070.079622 1105.403813 1067.878628 1.141291432 0.997890324 1.029479114 1.171304412 1.218837559 1.432455923 1.094845579 1.00206109 1.035139934 1 10.06053197 -8.001358629 24.99999656 1.020850942 1.163274535 0.276714896 0.11060685 81.64880045 1502418.357 0.053486931 0.035505012 9.97E-09 8.001358629 0.142423593 SSSPATEQS(ph)WMENDFDELREEGFRR ddPTM_K562_Paclitaxel_30min_R1 1 SSSPATEQSWMENDFDELREEGFRR 25 2 Q9UN81 Q9UN81 L1RE1 LINE-1 retrotransposable element ORF1 protein 1 S(0.011)S(0.011)S(0.146)PAT(0.198)EQS(0.633)WMENDFDELREEGFRR 70.959 0.0066657 103200000 845.02 901.02 996.32 799.7 583.91 575.15 673.16 861.3 739.51 980.7 TRUE FALSE 856.8528871 999.3964107 744.7866937 748.4108213 663.4484277 677.144777 800.8885959 788.1271889 810.5432397 780.8328017 1.0973577 1.279910896 0.95383633 0.958477692 0.849667722 0.867208416 1.025685133 1.009341804 1.03804968 1 9.60886985 -5.775278171 24.99002925 0.957756428 1.188634279 0.609919262 0.072157982 132.9415088 240065.9638 0.019988018 0.041951238 1.68E-06 5.775278171 0.230877851 SSSPNS(ph)PLPMFR ddPTM_K562_Paclitaxel_30min_R1 1 SSSPNSPLPMFR 12 0 A0A0U1RR27;Q7Z401;Q7Z401-2;H3BTW5 A0A0U1RR27 DENND4A C-myc promoter-binding protein 1 SSS(0.005)PNS(0.995)PLPMFR 84.892 0.02527 55209000 416.86 315.24 612.36 637.65 493.24 349.11 360.99 493.76 453.89 623.75 TRUE FALSE 422.6973261 349.6589693 457.7621444 596.753983 560.4276386 411.0197568 429.485968 451.812006 497.4881625 496.6294076 0.851132292 0.704064165 0.921737894 1.201608229 1.128462451 0.827618644 0.864801724 0.909756851 1.001729166 1 8.956025882 -5.936415449 6.463998496 0.986495758 0.782177683 0.363443329 0.111256115 0.243327733 18.97082212 0.03269223 0.068991182 1.16E-06 5.936415449 -0.204318075 SSSPSDSDTS(ph)GFSSGSDHLSDLISSLR ddPTM_K562_Paclitaxel_30min_R1 1 SSSPSDSDTSGFSSGSDHLSDLISSLR 27 0 H3BNC9;A0A0J9YXP0;A0A087X171;A0A087WVR7;A0A087WXG7;A0A024R214;Q9BZB8-4;Q9BZB8-2;Q9BZB8-3;Q9BZB8 H3BNC9 CPEB1 Cytoplasmic polyadenylation element-binding protein 1 1 S(0.017)S(0.017)S(0.071)PS(0.306)DS(0.06)DT(0.07)S(0.458)GFS(0.001)SGSDHLSDLISSLR 96.052 7.58E-08 0 603.38 510.68 868.03 716.1 531.74 504.69 671.05 759.48 669.39 1004.8 TRUE FALSE 611.8291816 566.4377694 648.8850908 670.1725511 604.1719904 594.1896853 798.3782344 694.9574335 733.6879004 800.0212085 0.764766203 0.708028442 0.811084861 0.837693481 0.755194967 0.742717417 0.997946337 0.868673763 0.917085563 1 9.643894436 -8.034719333 0.532839197 0.99281866 0.749110967 0.62240932 0.060794873 0.602290915 0.368154438 0.061702334 0.043907662 9.23E-09 8.034719333 -0.243707693 SSSQPSPAICSAPATLTPRS(ph)PHASR ddPTM_K562_Paclitaxel_30min_R1 2 SSSQPSPAICSAPATLTPRSPHASR 25 1 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 1 SSSQPSPAICSAPAT(0.035)LT(0.035)PRS(0.658)PHAS(0.272)R;SSSQPSPAICSAPAT(0.006)LT(0.046)PRS(0.933)PHAS(0.016)R 122.31 3.51E-10 43674000 1702.17 1524.4 1949.9 1806.59 1461.7 1483.49 1610.84 1742.33 2319.9 1675.22 TRUE FALSE 1726.005632 1690.839147 1457.623629 1690.723403 1660.808287 1746.566122 1916.488481 1594.308191 2542.736761 1333.809244 1.294042337 1.267676884 1.092827655 1.267590107 1.245161775 1.309457203 1.4368535 1.195304499 1.906372123 1 10.38133664 -7.481920076 1.652856907 1.407266314 1.224136987 0.089425328 0.220819868 0.832310613 4.571180422 0.099284781 0.07641257 3.30E-08 7.481920076 -0.183129327 SSSQRS(ph)PS(ph)PGPNHTSNSSNASNATVVPQNSSAR ddPTM_K562_Paclitaxel_30min_R1 2 SSSQRSPSPGPNHTSNSSNASNATVVPQNSSAR 33 1 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 2 S(0.003)S(0.003)S(0.025)QRS(0.77)PS(0.907)PGPNHT(0.243)S(0.036)NS(0.007)S(0.004)NAS(0.001)NAT(0.001)VVPQNSSAR;S(0.001)S(0.001)S(0.005)QRS(0.979)PS(0.995)PGPNHT(0.019)SNSSNASNATVVPQNSSAR 133.56 7.74E-25 132067000 1724 1858.88 2288.9 2162.1 1498.25 1842.24 1512.04 2114.89 2135.2 1985.55 TRUE FALSE 1748.141319 2061.838805 1711.038886 2023.432583 1702.337016 2168.935398 1798.941697 1935.216894 2340.2955 1580.89382 1.105792999 1.304223458 1.082323724 1.279929466 1.076819325 1.371967788 1.137926959 1.224128319 1.48036223 1 10.62652476 -7.251501742 24.90441882 1.250325702 1.178541322 0.061180968 0.139523981 2145.755769 5377421.823 0.043675491 0.04315623 5.60E-08 7.251501742 -0.07178438 SSSQRS(ph)PSPGPNHTSNSSNASNATVVPQNSSAR ddPTM_K562_Paclitaxel_30min_R1 3 SSSQRSPSPGPNHTSNSSNASNATVVPQNSSAR 33 1 A0A0A0MRT2;Q9BTA9-5;Q9BTA9-2;Q9BTA9 A0A0A0MRT2 WAC WW domain-containing adapter protein with coiled-coil 1 S(0.124)S(0.124)S(0.124)QRS(0.443)PS(0.124)PGPNHT(0.006)S(0.018)NS(0.014)S(0.018)NAS(0.003)NATVVPQNSSAR;S(0.014)S(0.014)S(0.056)QRS(0.766)PS(0.149)PGPNHT(0.001)SNSSNASNATVVPQNSSAR;S(0.206)S(0.206)S(0.206)QRS(0.288)PS(0.079)PGPNHT(0.003)S(0.004)NS(0.006)S(0.002)NASNATVVPQNSSAR 135.47 3.21E-25 39624900 2015.7 1322.99 2115.892 1813.45 1820.91 1629.15 1402.17 1633.76 1994.13 2031.57 TRUE FALSE 2043.926019 1467.438522 1581.708896 1697.143434 2068.94877 1918.056878 1668.224438 1494.96189 2185.675097 1617.534919 1.263605499 0.907206704 0.977851468 1.049215948 1.279075182 1.185790091 1.031337511 0.924222329 1.351238277 1 10.65958114 -5.189693288 21.33359463 1.080165825 1.263620893 0.134340409 0.140950989 59142.70147 17580118.71 0.035650171 174.2970574 6.46E-06 5.189693288 0.183455068 SSSQSGSGPSS(ph)PDSVLRPR ddPTM_K562_Paclitaxel_30min_R1 1 SSSQSGSGPSSPDSVLRPR 19 1 O75427;H7C5D9 O75427 LRCH4 Leucine-rich repeat and calponin homology domain-containing protein 4 1 SSS(0.004)QS(0.01)GS(0.004)GPS(0.185)S(0.795)PDS(0.001)VLRPR 90.06 0.0011741 31103000 577.3 540.56 784.62 634.36 718.66 629.94 398.41 690.72 746.06 823.33 TRUE FALSE 585.3839811 599.5801689 586.5329769 593.6749889 816.553659 741.6510142 474.0062177 632.0390247 817.7223965 655.5348941 0.89298676 0.914642644 0.894739521 0.905634459 1.245629586 1.131367713 0.723083122 0.964157714 1.247412463 1 9.356528767 -6.584741215 24.9999918 1.041128622 0.901835875 0.209026933 0.141978332 125.5898583 50752.45061 0.044774508 0.057803648 2.60E-07 6.584741215 -0.139292747 SSSS(ph)FTPFIDPR ddPTM_K562_Paclitaxel_30min_R1 3 SSSSFTPFIDPR 12 0 C9J840;A0A0D9SG62;G5E948;A0A0D9SEY1;O95819-2;O95819-6;O95819-3;E7EX83;H7C0P6;E7ENQ1;G3XAA2;H7C360;E7EN19;O95819-4;O95819;O95819-5 C9J840 MAP4K4 Mitogen-activated protein kinase kinase kinase kinase 4 1 SSS(0.056)S(0.827)FT(0.116)PFIDPR;SSS(0.009)S(0.991)FTPFIDPR;SSS(0.012)S(0.988)FTPFIDPR 249.2 3.67E-54 54559000 4546.4 4926.8 5746.7 5052.8 3918.3 4357.4 4589.4 5147.5 5090.8 5824.2 TRUE FALSE 4610.063627 5464.724685 4295.874511 4728.736023 4452.038797 5130.123709 5460.214692 4710.187745 5579.794086 4637.224843 0.994142786 1.178447212 0.926389092 1.01973404 0.96006533 1.106291776 1.177474648 1.015734174 1.203261493 1 12.17904596 -7.294787817 22.3687228 1.106343528 1.020050331 0.197243328 0.084913624 296.8224892 199094.0033 0.028928603 0.025516205 5.07E-08 7.294787817 -0.086293197 SSSS(ph)QTLTQFDSNIAPADPDTAIVHPVPIR ddPTM_K562_Paclitaxel_30min_R1 2 SSSSQTLTQFDSNIAPADPDTAIVHPVPIR 30 0 Q96D71-3;Q96D71;H0YE73 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 1 S(0.251)S(0.251)S(0.064)S(0.309)QT(0.124)LTQFDSNIAPADPDTAIVHPVPIR;S(0.102)S(0.102)S(0.036)S(0.701)QT(0.058)LTQFDSNIAPADPDTAIVHPVPIR 147.8 3.27E-32 77801000 304.826 232.107 380.76 357.739 409.19 390.72 148.85 397.95 272.631 574.38 TRUE FALSE 309.0945045 257.4492272 284.6324288 334.7952217 464.9286056 460.008706 177.0935105 364.1416636 298.8184257 457.3210407 0.675880786 0.562950759 0.622390845 0.7320792 1.016635064 1.005876977 0.387241117 0.79624953 0.653410622 1 8.837063487 -6.357598343 4.225245152 0.794228681 0.614542103 0.173670072 0.18157629 0.448175613 14.0053638 0.054655811 0.083782647 4.39E-07 6.357598343 -0.179686579 SSSSASQSNHSCTSMPSS(ph)PATPASGTK ddPTM_K562_Paclitaxel_30min_R1 2 SSSSASQSNHSCTSMPSSPATPASGTK 27 0 H3BPE1;H3BQK9;Q9UPN3;H0Y390;A0A590UJG2;Q9UPN3-4;Q9UPN3-3;Q9UPN3-2;Q9UPN3-5;H0Y6T5;H0Y4F5;H0Y314 H3BPE1 MACF1 "Microtubule-actin cross-linking factor 1, isoforms 1/2/3/5" 1 SSSSASQSNHSCTSMPS(0.258)S(0.734)PAT(0.007)PAS(0.001)GTK;SSSSASQSNHSCTSMPS(0.255)S(0.739)PAT(0.005)PAS(0.001)GTK 155.4 8.34E-35 16970100 8014.6 7164.2 14493.4 8845.4 7611.5 7386.3 5175.3 8192.9 5925.4 9323 TRUE FALSE 8126.829127 7946.411584 10834.36192 8278.095635 8648.315164 8696.156596 6157.286158 7496.862007 6494.561145 7422.967482 1.094822138 1.070516825 1.459572865 1.11520031 1.165075178 1.171520233 0.829491194 1.009954849 0.874927872 1 12.85778033 -7.743682903 23.14949183 0.929423137 1.183658742 0.544166271 0.112438195 77.91996456 101585.663 0.043237512 0.033392635 1.80E-08 7.743682903 0.254235605 SSSSLLAS(ph)PGHISVK ddPTM_K562_Paclitaxel_30min_R1 1 SSSSLLASPGHISVK 15 0 A0A499FIX8;H7BXI1;A0A087WXU3;A0FGR8-5;A0FGR8-2;A0FGR8;A0FGR8-6 A0A499FIX8 ESYT2 Extended synaptotagmin-2 1 SSSSLLAS(0.999)PGHISVK 102.69 0.0029677 17570000 2940.3 2765 5361.2 3475.2 2843.5 2802.7 2050 3398 1801.8 3740.4 TRUE FALSE 2981.473272 3066.892051 4007.698754 3252.316226 3230.832841 3299.719493 2438.976798 3109.31869 1974.870941 2978.104427 1.001131204 1.029813469 1.345721365 1.092075952 1.084862173 1.107993213 0.818969535 1.044059658 0.663130185 1 11.54017863 -7.74958347 24.27635007 0.885211497 1.115330305 0.428657285 0.129257406 148.5804623 304236.0929 0.048750479 0.037431351 1.78E-08 7.74958347 0.230118808 SSSSLLASPGHISVKEPTPSIAS(ph)DISLPIATQELR ddPTM_K562_Paclitaxel_30min_R1 2 SSSSLLASPGHISVKEPTPSIASDISLPIATQELR 35 1 A0A499FIX8;H7BXI1;A0A087WXU3;A0FGR8-5;A0FGR8-2;A0FGR8;A0FGR8-6 A0A499FIX8 ESYT2 Extended synaptotagmin-2 1 SSSSLLAS(0.002)PGHIS(0.05)VKEPT(0.185)PS(0.01)IAS(0.669)DIS(0.081)LPIAT(0.003)QELR;S(0.025)S(0.025)S(0.025)S(0.026)LLAS(0.016)PGHIS(0.017)VKEPT(0.077)PS(0.082)IAS(0.662)DIS(0.041)LPIAT(0.003)QELR 73.916 1.72E-06 75107000 1791.82 1258.04 1991.75 1566.62 1244.11 1391.98 1381.29 2318.78 2208.92 2413.93 TRUE FALSE 1816.911008 1395.397062 1488.908079 1466.144005 1413.578845 1638.828109 1643.382567 2121.785166 2421.096636 1921.969741 0.945337988 0.72602447 0.77467821 0.762834073 0.735484443 0.852681535 0.855051217 1.103963876 1.259695501 1 10.90836991 -8.220886493 2.808912022 1.148438598 0.79288518 0.747937421 0.083879085 0.124747449 1.936507578 0.048482143 0.022904052 6.01E-09 8.220886493 -0.355553417 SSSSS(ph)QESLNRPFSSK ddPTM_K562_Paclitaxel_30min_R1 1 SSSSSQESLNRPFSSK 16 1 E3W994;J3KR49;O75122;E7ERI8;E7EW49;O75122-3;A0A0U1RQI6;B3KR06;E7ENG2;O75122-2 E3W994 CLASP2 CLIP-associating protein 2 1 SSSS(0.027)S(0.973)QESLNRPFSSK 165.58 4.08E-07 21144000 3298 2868.7 5063.4 3116.1 2335.5 2058.5 2196.6 3142.1 2778.2 3859.9 TRUE FALSE 3344.182175 3181.914367 3785.082047 2916.247293 2653.63464 2423.546072 2613.393383 2875.158993 3045.058523 3073.250261 1.088158103 1.03535804 1.231621809 0.948913055 0.863461942 0.78859379 0.850367904 0.935543398 0.990826735 1 11.58554954 -6.448349353 6.259490626 0.894007204 1.109149006 0.613419584 0.075667256 0.157013662 10.57428684 0.022301752 0.033048494 3.56E-07 6.448349353 0.215141802 SSSSS(ph)QESLNRPLSAK ddPTM_K562_Paclitaxel_30min_R1 1 SSSSSQESLNRPLSAK 16 1 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 S(0.031)S(0.031)S(0.021)S(0.175)S(0.74)QES(0.002)LNRPLSAK 72.968 0.024525 30113000 504.1 595.05 1365.2 830.17 793.52 515.3 559.24 734.12 727.58 862.22 TRUE FALSE 511.1589553 660.0195713 1020.538375 776.9266119 901.6108584 606.6812198 665.3528706 671.7519238 797.4673099 686.4990907 0.744587957 0.96142818 1.486583725 1.131722711 1.313346034 0.883732008 0.969197017 0.978518301 1.161643651 1 9.423113999 -7.277941195 24.95325024 0.995436778 1.138485597 0.097307105 0.194781208 2012.780371 3043620.514 0.072401866 0.064035596 5.27E-08 7.277941195 0.143048819 SSSSSASPSS(ph)PSSREEK ddPTM_K562_Paclitaxel_30min_R1 2 SSSSSASPSSPSSREEK 17 1 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;Q9NYF8-4;H0YF63 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 SSSSS(0.001)AS(0.004)PS(0.305)S(0.675)PS(0.016)S(0.001)REEK;SSSSSASPS(0.053)S(0.924)PS(0.018)S(0.004)REEK 197.67 8.76E-13 9679100 2685.23 2292.54 4050.6 2709.74 1934.98 1511.14 1848.77 2943.64 2162.9 3057.18 TRUE FALSE 2722.831505 2542.84727 3027.975933 2535.949405 2198.557035 1779.119462 2199.564456 2693.559408 2370.656209 2434.125038 1.118607903 1.044665837 1.243968936 1.04183202 0.903222719 0.730907178 0.903636593 1.106582187 0.973925403 1 11.24918756 -6.564100458 4.770810797 0.931211628 1.129634651 0.446096276 0.099846339 0.19750674 10.32124833 0.032762148 0.04372404 2.73E-07 6.564100458 0.198423023 SSSSSGVPYS(ph)PAIPNK ddPTM_K562_Paclitaxel_30min_R1 1 SSSSSGVPYSPAIPNK 16 0 B4DJ07;A0A0A0MRE1;A0A0A0MSB8;Q9UPT5-4;Q9UPT5-2;Q9UPT5-5;Q9UPT5-1;Q9UPT5-6;Q9UPT5 B4DJ07 EXOC7 Exocyst complex component 7 1 SSSSSGVPY(0.013)S(0.986)PAIPNK 75.911 0.03001 14212000 5241.4 4747.5 8153.4 5344.8 3810 3257.3 3909.9 5252.2 4306.2 6774.4 TRUE FALSE 5314.795771 5265.848105 6094.97333 5002.00845 4328.986504 3834.93642 4651.783114 4805.992827 4719.829751 5393.773561 0.9853576 0.976282754 1.130001707 0.927367156 0.802589589 0.710993218 0.862435744 0.891026064 0.875051519 1 12.39707924 -6.512965182 6.428753134 0.845865248 1.026296778 0.490032829 0.078710657 0.123240653 23.28788933 0.023355747 0.032518544 3.07E-07 6.512965182 0.18043153 SSSSSGVPYS(ph)PAIPNKR ddPTM_K562_Paclitaxel_30min_R1 2 SSSSSGVPYSPAIPNKR 17 1 B4DJ07;A0A0A0MRE1;A0A0A0MSB8;Q9UPT5-4;Q9UPT5-2;Q9UPT5-5;Q9UPT5-1;Q9UPT5-6;Q9UPT5 B4DJ07 EXOC7 Exocyst complex component 7 1 S(0.006)S(0.006)S(0.017)S(0.055)S(0.055)GVPY(0.043)S(0.818)PAIPNKR;SSSSSGVPY(0.004)S(0.995)PAIPNKR 67.655 0.022205 44239000 3686.4 2729.5 4875.3 3719 2597.83 2493.37 2888.5 3774.4 3683 5248 TRUE FALSE 3738.020974 3027.516041 3644.470218 3480.479986 2951.698428 2935.534161 3436.577796 3453.741161 4036.768606 4178.454719 0.894594108 0.72455399 0.872205268 0.832958646 0.706409098 0.702540618 0.822451846 0.826559432 0.966091265 1 12.02875379 -8.750304762 2.361618509 1.003052254 0.78917766 0.587312929 0.062896111 0.202711223 2.126121342 0.060073131 0.017275815 1.78E-09 8.750304762 -0.213874594 SSSSTGSEVGGQS(ph)TGSNHK ddPTM_K562_Paclitaxel_30min_R1 1 SSSSTGSEVGGQSTGSNHK 19 0 H0Y720;Q9UPQ9-1;Q9UPQ9 H0Y720 TNRC6B Trinucleotide repeat-containing gene 6B protein 1 S(0.159)S(0.159)S(0.044)S(0.044)T(0.055)GS(0.044)EVGGQS(0.324)T(0.05)GS(0.12)NHK 88.04 0.0018254 1928100 647.1 708.37 1126.4 622.97 536.65 632.31 550.25 984.01 660.95 1074.6 TRUE FALSE 656.1613965 785.7122322 842.0263889 583.0154925 609.7508156 744.4413004 654.657065 900.4122085 724.4372007 855.5959301 0.766905701 0.91832161 0.984140246 0.681414523 0.712662127 0.870085135 0.765147474 1.052380191 0.846704823 1 9.74078581 -8.252157842 24.93150015 0.962156883 0.817794387 0.330275363 0.09920995 802.2030662 2154836.097 0.049336697 0.027991762 5.60E-09 8.252157842 -0.144362496 SSSTGSSSSTGGGGQESQPS(ph)PLALLAATCSR ddPTM_K562_Paclitaxel_30min_R1 2 SSSTGSSSSTGGGGQESQPSPLALLAATCSR 31 0 P08047;H3BVI2;P08047-2 P08047 SP1 Transcription factor Sp1 1 SSSTGSSSSTGGGGQES(0.002)QPS(0.997)PLALLAATCSR;SSSTGSSSSTGGGGQES(0.001)QPS(0.999)PLALLAATCSR 124.31 1.47E-20 61537000 557.36 524.97 541.86 626.11 618.45 418.49 488.07 652.14 514.53 718.81 TRUE FALSE 565.1647596 582.2879999 405.0607414 585.954107 702.6933604 492.7033256 580.6787346 596.7366365 563.9529055 572.3161274 0.987504515 1.017423714 0.707756993 1.023829452 1.227806324 0.86089366 1.014611867 1.042669615 0.985387059 1 9.160668451 -6.450968884 24.99997295 1.025636882 0.90725538 0.18398873 0.113612662 258.8144313 89977.49585 0.032244118 0.047825745 3.54E-07 6.450968884 -0.118381503 SSSVGSSSSYPIS(ph)PAVSR ddPTM_K562_Paclitaxel_30min_R1 4 SSSVGSSSSYPISPAVSR 18 0 Q15149-4;H0YDN1;Q15149-7;Q15149-8;Q15149-9;Q15149-5;Q15149-6;Q15149-3;Q15149-2;Q15149 Q15149-4 PLEC Plectin 1 SSSVGSSSSYPIS(1)PAVSR;SSSVGSSSSYPIS(1)PAVSR;SSSVGSSSSYPIS(1)PAVSR;SSSVGSS(0.005)S(0.154)S(0.01)YPIS(0.83)PAVSR 248.01 1.21E-65 156931000 8739.1 8307.4 10415.8 8269.9 7476.6 7877.45 6688.8 8108.4 8051.28 9648.7 TRUE FALSE 8861.474362 9214.430026 7786.202469 7739.505629 8495.0395 9274.405153 7957.964882 7419.540809 8824.641418 7682.289644 1.153493916 1.199437987 1.013526283 1.007447778 1.105795263 1.207244921 1.035884515 0.965798109 1.148699389 1 12.90732064 -5.753008771 24.99909453 1.06340569 1.176465989 0.296964907 0.071232886 241.9408222 717405.6023 0.018962483 0.048462482 1.77E-06 5.753008771 0.113060299 SST(ph)PLPTISSSAENTR ddPTM_K562_Paclitaxel_30min_R1 9 SSTPLPTISSSAENTR 16 0 G5E972;P42167;H0YJH7;P42167-3;P42167-2;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 SS(0.01)T(0.99)PLPTISSSAENTR;S(0.001)S(0.003)T(0.997)PLPTISSSAENTR;S(0.096)S(0.096)T(0.809)PLPTISSSAENTR;S(0.37)S(0.077)T(0.553)PLPTISSSAENTR;S(0.006)S(0.075)T(0.919)PLPTISSSAENTR;S(0.004)S(0.006)T(0.987)PLPT(0.001)ISSSAENTR;S(0.007)S(0.007)T(0.987)PLPTISSSAENTR;S(0.001)S(0.002)T(0.997)PLPTISSSAENTR;S(0.006)S(0.006)T(0.981)PLPT(0.005)IS(0.001)SSAENTR 220.46 8.42E-30 6708790900 19408.57 18627.72 27377.28 21788.76 17427.3 17206.69 17606.09 20718.83 18580.52 23088.65 TRUE FALSE 19680.34986 20661.55746 20465.54707 20391.32646 19801.19331 20258.05488 20946.75367 18958.63607 20365.26197 18383.17046 1.070563421 1.123938741 1.11327625 1.109238828 1.077137013 1.101989177 1.139452725 1.031303937 1.107820983 1 14.16609798 -10.03479278 0.493301275 0.989110745 1.104933608 0.509076987 0.028884845 3.464391612 1.031824459 0.10284066 0.014338108 9.23E-11 10.03479278 0.115822864 SST(ph)PPGESYFGVSSLQLK ddPTM_K562_Paclitaxel_30min_R1 1 SSTPPGESYFGVSSLQLK 18 0 Q9UQ35;Q9UQ35-2 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 S(0.073)S(0.073)T(0.854)PPGESYFGVSSLQLK 140.91 2.93E-10 337530000 2734 2582.3 5722.9 2894.6 2459.3 2061.1 2545.5 4099.5 2986.8 4676.2 TRUE FALSE 2772.284435 2864.244247 4278.083115 2708.953312 2794.298296 2426.607146 3028.495337 3751.221887 3273.695485 3723.187873 0.744599663 0.769298876 1.149037669 0.727589744 0.750512301 0.651755224 0.81341459 1.007529573 0.879272171 1 11.8623227 -8.22378482 9.797174628 0.957493976 0.802479794 0.247391837 0.128890111 0.869842737 222.9114308 0.064584898 0.037037075 5.97E-09 8.22378482 -0.155014183 SST(ph)PPLHVHVDENTPVHVHIK ddPTM_K562_Paclitaxel_30min_R1 2 SSTPPLHVHVDENTPVHVHIK 21 0 Q5BJF6-9;Q5BJF6-3;Q5BJF6-4 Q5BJF6-9 ODF2 Outer dense fiber protein 2 1 S(0.155)S(0.155)T(0.69)PPLHVHVDENTPVHVHIK;S(0.154)S(0.154)T(0.691)PPLHVHVDENTPVHVHIK 90.882 0.00026174 105044000 8788.2 6878.9 14192.3 9857.4 7089.6 6384.5 6190.6 8968.3 7503 10591.3 TRUE FALSE 8911.261914 7629.961565 10609.27834 9225.190484 8055.323548 7516.701432 7365.234033 8206.386937 8223.696674 8432.787246 1.056739801 0.904797114 1.25809866 1.093966943 0.95523856 0.891366189 0.873404465 0.973152375 0.975205046 1 13.04179384 -6.808280769 5.807344071 0.935922208 1.07889438 0.358434467 0.087325725 0.215479028 16.70992492 0.028303081 0.032771939 1.55E-07 6.808280769 0.142972171 SST(ph)PPRQS(ph)PSRS(ph)SSPQPK ddPTM_K562_Paclitaxel_30min_R1 1 SSTPPRQSPSRSSSPQPK 18 2 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 S(0.104)S(0.129)T(0.766)PPRQS(0.998)PS(0.012)RS(0.408)S(0.324)S(0.258)PQPK 98.376 0.0011956 8558700 3153 2631.5 5071.8 3026 2444.7 2276.3 1839 2708.5 7202.7 2947 TRUE FALSE 3197.151728 2918.816069 3791.361363 2831.925904 2777.709529 2679.969844 2187.94065 2478.396019 7894.551518 2346.399782 1.362577576 1.24395514 1.61582071 1.206923869 1.183817673 1.142162501 0.932467121 1.056254794 3.364538122 1 11.19623313 SST(ph)PQHPLLLAQPR ddPTM_K562_Paclitaxel_30min_R1 1 SSTPQHPLLLAQPR 14 0 Q8TEK3-1;Q8TEK3 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 1 S(0.007)S(0.021)T(0.972)PQHPLLLAQPR 71.929 0.031155 0 1292.9 1080.2 1628.5 1633.1 1239.8 1176.1 1171.5 1599.5 1243.7 1817 TRUE FALSE 1311.004589 1198.139889 1217.365034 1528.360275 1408.68175 1384.664822 1393.786009 1463.612491 1363.162942 1446.694403 0.906206996 0.828191418 0.841480434 1.056449982 0.973724477 0.957123232 0.963428079 1.011694307 0.942260466 1 10.49854449 -6.244480326 24.9835646 0.984167156 0.855582781 0.728173041 0.035737812 411.3877766 606043.3199 0.009545887 0.016481762 5.70E-07 6.244480326 -0.128584375 SSTFPQTDVLSSS(ph)LEAEHR ddPTM_K562_Paclitaxel_30min_R1 2 SSTFPQTDVLSSSLEAEHR 19 0 D4PHA4;Q86WP2-4;Q86WP2-3;Q86WP2;Q86WP2-2 D4PHA4 GPBP1 Vasculin 1 SSTFPQTDVLS(0.002)S(0.289)S(0.709)LEAEHR;SSTFPQTDVLS(0.001)S(0.196)S(0.803)LEAEHR 234.73 8.37E-47 247780000 8822.5 9239.1 10884.7 9066.4 8054.2 7302.1 7695 9419.8 10110.3 10666.1 TRUE FALSE 8946.04222 10247.85618 8136.722865 8484.921684 9151.318399 8597.024908 9155.086079 8619.529193 11081.43949 8492.342965 1.053424509 1.206717183 0.958124619 0.999126121 1.077596423 1.012326627 1.078040079 1.014976577 1.30487423 1 13.05194692 SSTPLHS(ph)PSPIR ddPTM_K562_Paclitaxel_30min_R1 3 SSTPLHSPSPIR 12 0 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 1 SST(0.018)PLHS(0.966)PS(0.015)PIR;SSTPLHS(0.974)PS(0.026)PIR;S(0.001)S(0.004)T(0.065)PLHS(0.906)PS(0.024)PIR 120.7 0.0018389 114255000 4155.8 4220.08 5400 4434.9 3880.98 4149.3 4128.9 4814.8 3585.35 5753.5 TRUE FALSE 4213.994022 4680.842606 4036.703214 4150.465364 4409.635182 4885.120096 4912.337221 4405.752687 3929.738887 4580.933542 0.919898528 1.021809761 0.881196633 0.906030469 0.962606233 1.066402743 1.072344136 0.9617587 0.857846736 1 12.16142592 -7.003589068 24.61377002 0.99656493 0.93490307 0.153280282 0.065254683 249.5185835 1711215.426 0.021952836 0.02435446 9.92E-08 7.003589068 -0.06166186 SSTPLPTISS(ph)SAENTR ddPTM_K562_Paclitaxel_30min_R1 1 SSTPLPTISSSAENTR 16 0 G5E972;P42167;H0YJH7;P42167-3;P42167-2;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 SSTPLPTIS(0.092)S(0.591)S(0.317)AENTR 270.79 2.74E-112 72613000 2312 2104 2608.9 2090.4 2215.2 2016.1 2030 2292.6 1653.8 3006.2 TRUE FALSE 2344.375133 2333.721835 1950.250929 1956.3311 2516.947744 2373.627028 2415.181903 2097.82932 1812.654879 2393.53479 0.979461482 0.975010618 0.814799491 0.817339739 1.051560961 0.991682694 1.009043993 0.876456582 0.757312944 1 11.22492706 -12.4898271 2.236563249 1.970018047 0.922173526 0.062487791 0.093263681 15226405.7 1524781.317 74671046.99 0.026483346 3.24E-13 12.4898271 -1.047844521 SSTPLPTISSS(ph)AENTR ddPTM_K562_Paclitaxel_30min_R1 1 SSTPLPTISSSAENTR 16 0 G5E972;P42167;H0YJH7;P42167-3;P42167-2;P42166 G5E972;P42166 TMPO "Lamina-associated polypeptide 2, isoforms beta/gamma;Thymopoietin;Thymopentin;Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 1 SSTPLPTISS(0.004)S(0.996)AENTR 270.79 2.74E-112 78687000 3021.1 3196.8 3739.5 3266.7 2872.7 3041.4 2819 3216 2412 3855.8 TRUE FALSE 3063.404721 3545.837435 2795.416975 3057.188483 3264.010375 3580.749587 3353.890534 2942.780726 2643.683377 3069.985844 0.997856302 1.155001233 0.910563474 0.99583146 1.063200465 1.166373322 1.092477524 0.958564917 0.861138621 1 11.58401629 -8.407854512 5.029282855 0.924494599 1.054749137 0.31222381 0.078339914 0.270393104 9.984745958 0.047137932 0.02153787 3.91E-09 8.407854512 0.130254538 SSTPSS(ph)PTGTSSSDSGGHHIGWGER ddPTM_K562_Paclitaxel_30min_R1 3 SSTPSSPTGTSSSDSGGHHIGWGER 25 0 P46019 P46019 PHKA2 "Phosphorylase b kinase regulatory subunit alpha, liver isoform" 1 S(0.001)S(0.001)T(0.005)PS(0.03)S(0.747)PT(0.11)GT(0.09)S(0.017)S(0.001)SDSGGHHIGWGER;S(0.004)S(0.004)T(0.04)PS(0.141)S(0.438)PT(0.063)GT(0.173)S(0.098)S(0.03)S(0.009)DSGGHHIGWGER;S(0.011)S(0.011)T(0.04)PS(0.194)S(0.744)PTGTSSSDSGGHHIGWGER 150.11 7.90E-26 43534400 1903.58 1979 2609.07 2014.25 1502.87 1982.53 1861.13 2413.2 1628.12 2102.63 TRUE FALSE 1930.235993 2195.073913 1950.37801 1885.06502 1707.586338 2334.103859 2214.269702 2208.183597 1784.508201 1674.112852 1.152990368 1.311186346 1.165021825 1.126008332 1.019994761 1.394233284 1.322652591 1.319017171 1.065942597 1 10.70918107 -8.92804952 5.739969013 1.001129078 1.22520748 0.349094674 0.107356468 0.213909115 11.40924548 0.110938896 0.028834506 1.18E-09 8.92804952 0.224078402 SSTRPPS(ph)IADPDPSDLPVDR ddPTM_K562_Paclitaxel_30min_R1 1 SSTRPPSIADPDPSDLPVDR 20 1 Q9NX94;Q9NX94-2 Q9NX94 WBP1L WW domain binding protein 1-like 1 S(0.215)S(0.215)T(0.215)RPPS(0.327)IADPDPS(0.027)DLPVDR 73.688 0.011627 0 139.3 160.01 0 207.81 153.64 204.24 165.65 199.04 64.926 0 TRUE FALSE 141.2506298 177.4804329 0 194.4819967 174.5683691 240.4590963 197.0812227 182.1303096 71.1624324 0 0 SSTVPSSNTAS(ph)GGMT(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 SSTVPSSNTASGGMTR 16 0 J3KNR0;P27448-8;P27448-3;P27448-4;P27448-2;P27448;H0YIY6;P27448-6;P27448-7;A2SY06;H0YKP9 J3KNR0 MARK3 MAP/microtubule affinity-regulating kinase 3 2 SSTVPSSNTAS(1)GGMT(1)R;SSTVPSSNTAS(1)GGMT(1)R 94.007 0.018359 2826400000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 SSTVPSSNTAS(ph)GGMTRR ddPTM_K562_Paclitaxel_30min_R1 2 SSTVPSSNTASGGMTRR 17 1 J3KNR0;P27448-8;P27448-3;P27448-4;P27448-2;P27448;H0YIY6;P27448-6;P27448-7;A2SY06;H0YKP9 J3KNR0 MARK3 MAP/microtubule affinity-regulating kinase 3 1 SSTVPSSNT(0.003)AS(0.992)GGMT(0.005)RR;SSTVPSSNT(0.004)AS(0.951)GGMT(0.045)RR 81.379 0.0085919 8606500 1421.07 1575.5 2292 1738.05 1184.93 1493.76 1639.32 1642.36 1360.12 1712.49 TRUE FALSE 1440.969364 1747.518418 1713.356253 1626.579252 1346.337527 1758.657363 1950.372412 1502.831267 1490.765603 1363.483598 1.056829262 1.281657088 1.256602027 1.19295843 0.987424806 1.289826563 1.430433351 1.10219974 1.093350595 1 10.41308163 -8.504017693 24.81710433 1.063708492 1.215296308 0.253803292 0.118499897 1010.153703 1329155.121 0.069229609 0.032348111 3.13E-09 8.504017693 0.151587816 SSVQGAS(ph)S(ph)REGSPARS(ph)S(ph)TPLHSPSPIR ddPTM_K562_Paclitaxel_30min_R1 1 SSVQGASSREGSPARSSTPLHSPSPIR 27 2 O95817;C9JFK9 O95817 BAG3 BAG family molecular chaperone regulator 3 4 S(0.044)S(0.044)VQGAS(0.755)S(0.738)REGS(0.403)PARS(0.667)S(0.655)T(0.655)PLHS(0.032)PS(0.008)PIR 49.176 0.010225 7225200 1671.2 1550.6 1836.6 1792.3 1294.8 1427.7 1108.4 1563.1 1511.6 1650.6 TRUE FALSE 1694.601956 1719.899752 1372.927615 1677.3499 1471.173681 1680.882549 1318.713114 1430.304898 1656.795934 1314.206814 1.289448463 1.308697941 1.044681553 1.27632111 1.119438482 1.279009157 1.003428912 1.088340802 1.260681284 1 10.35997661 -2 0.088246659 0.920134815 1.883259416 0.285125763 0.102302621 215.4385271 1.37342815 2.010045191 25.13820514 0.01 2 0.963124601 ST(ph)EHRT(ph)VGTQRR ddPTM_K562_Paclitaxel_30min_R1 1 STEHRTVGTQRR 12 2 A0A1B0GVH6 A0A1B0GVH6 2 S(0.452)T(0.549)EHRT(0.998)VGT(0.002)QRR 56.569 0.029089 0 622.02 686.45 499.44 820.01 616.11 675.89 679.82 693.56 758.65 687.74 TRUE FALSE 630.7301991 761.3989324 373.350195 767.4182288 700.0346128 795.7496015 808.8122961 634.6377489 831.5217222 547.5782105 1.151854086 1.390484351 0.681820766 1.401476929 1.27841941 1.453216337 1.477071733 1.158990144 1.518544212 1 9.096921229 ST(ph)MMTPSPPFS(ph)AR ddPTM_K562_Paclitaxel_30min_R1 1 STMMTPSPPFSAR 13 0 E9PRC5 E9PRC5 PEX26 2 S(0.177)T(0.818)MMT(0.004)PS(0.007)PPFS(0.995)AR 46.318 0.030419 4816100 2466.7 2421.4 3862.1 2962.4 2378 2237.1 2150.4 2714.2 2570 3078.4 TRUE FALSE 2501.24141 2685.776641 2887.065089 2772.404923 2701.92386 2633.818275 2558.427174 2483.611768 2816.859983 2451.02039 1.020489842 1.095778987 1.177903334 1.13112275 1.102366945 1.07458032 1.043821253 1.013297065 1.149260118 1 11.25916677 -7.376404025 2.798399994 1.053186785 1.110968325 0.18972242 0.052074058 0.471517351 7.151817606 0.020592316 0.017767356 4.20E-08 7.376404025 0.057781539 ST(ph)SHTSDFNPNSGSDQR ddPTM_K562_Paclitaxel_30min_R1 1 STSHTSDFNPNSGSDQR 17 0 Q99700;Q99700-4;Q99700-2;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;A0A5F9ZHH4;A0A5F9ZHX3;F8WB06;F8W0B5;F8VRK6 Q99700 ATXN2 Ataxin-2 1 S(0.232)T(0.618)S(0.074)HT(0.074)S(0.002)DFNPNSGSDQR 174.35 4.42E-09 3751900 1649.8 1323.9 1812.1 1351.9 1378.1 1155.7 1206.4 1870.7 1388.5 2145.4 TRUE FALSE 1672.90229 1468.447879 1354.612943 1265.195185 1565.820551 1360.647168 1435.308102 1711.772358 1521.871629 1708.166302 0.979355633 0.859663299 0.793021699 0.740674478 0.91666751 0.796554274 0.840262509 1.002111069 0.890938796 1 10.73823272 -8.248561474 24.25081411 0.959893697 0.841737663 0.377458406 0.069029592 533.9097277 1005426.393 0.033160556 0.01896858 5.64E-09 8.248561474 -0.118156033 ST(ph)SPSAAGGQQK ddPTM_K562_Paclitaxel_30min_R1 1 STSPSAAGGQQK 12 0 Q2TB10 Q2TB10 ZNF800 Zinc finger protein 800 1 S(0.138)T(0.499)S(0.36)PS(0.003)AAGGQQK 111.79 0.012917 5061800 3871.6 3795.3 7924.6 4734.2 3485.4 3347 3112.9 4393.8 3745.8 5387.9 TRUE FALSE 3925.814345 4209.683689 5923.93672 4430.569601 3960.170488 3940.543456 3703.556525 4020.519265 4105.600827 4289.843023 0.915141725 0.981314157 1.38092156 1.032804599 0.923150443 0.91857521 0.86333148 0.937218272 0.95705153 1 12.06670914 -6.631750008 4.788567856 0.926597826 1.099557564 0.270711031 0.117685357 0.272331821 10.30245302 0.036846263 0.047996082 2.33E-07 6.631750008 0.172959739 ST(ph)VGS(ph)S(ph)DNS(ph)S(ph)PQPLKR ddPTM_K562_Paclitaxel_30min_R1 1 STVGSSDNSSPQPLKR 16 1 Q9UHG0 Q9UHG0 DCDC2 Doublecortin domain-containing protein 2 5 S(0.447)T(0.556)VGS(0.997)S(1)DNS(1)S(1)PQPLKR 58.658 0.020477 17691000 0 0 0 0 63.582 0 0 0 0 0 TRUE FALSE 0 0 0 0 72.24294485 0 0 0 0 0 0 STAGDTHLGGEDFDNR ddPTM_K562_Paclitaxel_30min_R1 4 STAGDTHLGGEDFDNR 16 0 P11142-2;P11142;E9PKE3;E9PN89;P54652 P11142-2 HSPA8;HSPA2 Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2 0 ;;; 188.15 1.06E-09 1621600000 19788.8 20504.4 24108.4 20181.4 18455.7 17880.9 20311.1 23657.2 18964.1 24636.4 FALSE TRUE 20065.90425 22743.13973 18021.93625 18887.05533 20969.6788 21051.82655 24165.02519 21647.3732 20785.68654 19615.48816 1.022962268 1.159448062 0.918760528 0.962864405 1.069036806 1.073224708 1.231935958 1.103585749 1.059656858 1 14.25970562 -7.145014159 2.949101801 1.109658527 1.019849756 0.154668421 0.080133997 0.457192152 7.64463276 0.029360203 0.029340714 7.16E-08 7.145014159 -0.089808771 STAPSAAASASAS(ph)AAASSPAGGGAEALELLEHCGVCR ddPTM_K562_Paclitaxel_30min_R1 1 STAPSAAASASASAAASSPAGGGAEALELLEHCGVCR 37 0 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 STAPSAAAS(0.008)AS(0.026)AS(0.322)AAAS(0.322)S(0.322)PAGGGAEALELLEHCGVCR 76.329 2.25E-07 6928400 1974.2 2009.9 2279.5 1983.6 1712.6 1896.8 1615.7 2308.6 2195.7 2093.4 TRUE FALSE 2001.844891 2229.347679 1704.012033 1856.380774 1945.885115 2233.170848 1922.27064 2112.47002 2406.606796 1666.763931 1.201036844 1.337530551 1.022347557 1.113763467 1.167462937 1.339824318 1.15329508 1.267408048 1.443879815 1 10.70283407 -7.079116352 24.97724024 1.252289821 1.166570757 0.06751161 0.131168514 282.4991264 89183.05892 0.042848889 0.0428489 8.33E-08 7.079116352 -0.085719064 STAPSAAASASASAAAS(ph)SPAGGGAEALELLEHCGVCR ddPTM_K562_Paclitaxel_30min_R1 13 STAPSAAASASASAAASSPAGGGAEALELLEHCGVCR 37 0 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 STAPSAAASASAS(0.011)AAAS(0.494)S(0.494)PAGGGAEALELLEHCGVCR;STAPSAAASASAS(0.003)AAAS(0.498)S(0.498)PAGGGAEALELLEHCGVCR;STAPSAAAS(0.012)AS(0.04)AS(0.138)AAAS(0.405)S(0.405)PAGGGAEALELLEHCGVCR;STAPSAAASAS(0.001)AS(0.002)AAAS(0.773)S(0.225)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.567)S(0.433)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.568)S(0.432)PAGGGAEALELLEHCGVCR;STAPSAAASASAS(0.003)AAAS(0.498)S(0.498)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.556)S(0.444)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.5)S(0.5)PAGGGAEALELLEHCGVCR;STAPSAAAS(0.094)AS(0.076)AS(0.076)AAAS(0.376)S(0.376)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.5)S(0.5)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.5)S(0.5)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.5)S(0.5)PAGGGAEALELLEHCGVCR 189.35 5.55E-69 4968137300 11003.24 11065.96 13899.35 12732.73 10164.324 10514.655 9678.46 11556.968 11031.63 12853.53 TRUE FALSE 11157.31931 12274.17894 10390.28719 11916.10969 11548.87701 12379.28143 11514.89726 10575.13143 12091.26735 10233.97353 1.090223585 1.199356135 1.015273995 1.164367843 1.128484159 1.209626094 1.12516387 1.03333582 1.181483157 1 13.32107879 -13.82751703 0.488299742 1.54E-09 1.128173664 0.269629051 0.062606102 804.5293502 13.23266015 849.4042033 0.029956368 1.49E-14 13.82751703 1.128173663 STAPSAAASASASAAASS(ph)PAGGGAEALELLEHCGVCR ddPTM_K562_Paclitaxel_30min_R1 16 STAPSAAASASASAAASSPAGGGAEALELLEHCGVCR 37 0 Q13263;Q13263-2 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 STAPSAAASASASAAAS(0.209)S(0.791)PAGGGAEALELLEHCGVCR;STAPSAAASASAS(0.002)AAAS(0.216)S(0.782)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.169)S(0.831)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.204)S(0.795)PAGGGAEALELLEHCGVCR;STAPSAAASASAS(0.001)AAAS(0.199)S(0.8)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.209)S(0.791)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.228)S(0.772)PAGGGAEALELLEHCGVCR;STAPSAAASASAS(0.001)AAAS(0.215)S(0.783)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.197)S(0.803)PAGGGAEALELLEHCGVCR;STAPSAAASAS(0.002)AS(0.005)AAAS(0.26)S(0.733)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.178)S(0.821)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.193)S(0.807)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.217)S(0.783)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.209)S(0.791)PAGGGAEALELLEHCGVCR;STAPSAAASASASAAAS(0.201)S(0.799)PAGGGAEALELLEHCGVCR;STAPSAAASASAS(0.002)AAAS(0.351)S(0.647)PAGGGAEALELLEHCGVCR 180.4 1.31E-65 2465905400 10604.29 10629.05 13013.12 11354.419 9652.847 10310.82 9635.37 12187.86 11272.01 11639.34 TRUE FALSE 10752.78278 11789.56562 9727.796912 10626.19739 10967.72819 12139.29916 11463.63116 11152.42522 12354.73693 9267.236119 1.16030094 1.272177106 1.049697751 1.146641485 1.183495062 1.309915815 1.237006483 1.203425172 1.333163067 1 13.17792342 -7.012697258 23.20977483 1.232465235 1.158653927 0.064879669 0.097953382 529.3199639 967566.385 0.030139465 0.031641582 9.71E-08 7.012697258 -0.073811308 STAQQELDGKPAS(ph)PTPVIVASHTANKEEK ddPTM_K562_Paclitaxel_30min_R1 3 STAQQELDGKPASPTPVIVASHTANKEEK 29 2 H0YAC7;P35606-2;P35606 H0YAC7 COPB2 Coatomer subunit beta 1 STAQQELDGKPAS(0.5)PT(0.5)PVIVASHTANKEEK;STAQQELDGKPAS(0.5)PT(0.5)PVIVASHTANKEEK;STAQQELDGKPAS(0.861)PT(0.139)PVIVAS(0.001)HTANKEEK 102.21 8.53E-09 222993000 5995.7 3677.84 17027.5 6781.9 4139.07 3152.76 2608.47 6388 5861.4 10104.6 TRUE FALSE 6079.658298 4079.399009 12728.69703 6346.939289 4702.881409 3711.857719 3103.413565 5845.299527 6424.413659 8045.276973 0.755680422 0.507055136 1.582132856 0.788902521 0.584551834 0.461371029 0.385743533 0.72655044 0.798532317 1 12.97392637 -6.522737477 24.9877053 0.628062065 0.951057928 0.152597239 0.299843563 8.477785947 1499746.315 0.090104766 0.11761264 3.00E-07 6.522737477 0.322995863 STCS(ph)CPDLQPNGQDLGENSR ddPTM_K562_Paclitaxel_30min_R1 2 STCSCPDLQPNGQDLGENSR 20 0 F5H7V1;O43847;O43847-2 F5H7V1 NRD1 Nardilysin 1 S(0.008)T(0.008)CS(0.983)CPDLQPNGQDLGENSR;S(0.051)T(0.051)CS(0.899)CPDLQPNGQDLGENSR 131.31 1.59E-09 40298000 1890.17 1875.8 1775.11 1883.33 1564.7 1699.04 1727.97 1952.71 1769.98 2292 TRUE FALSE 1916.638212 2080.606188 1326.961526 1762.541643 1777.838631 2000.340888 2055.843287 1786.815097 1939.994487 1824.889142 1.050276517 1.140127441 0.727146376 0.965834912 0.974217332 1.096143783 1.126557904 0.979136242 1.063075254 1 10.83359311 -7.180735246 7.049318789 1.056135775 0.966435044 0.129786831 0.104968806 0.571606258 43.08327741 0.036357397 0.036356024 6.60E-08 7.180735246 -0.089700731 STDEYS(ph)EADEEEEEEEGKPSR ddPTM_K562_Paclitaxel_30min_R1 1 STDEYSEADEEEEEEEGKPSR 21 1 Q96T23-3;Q96T23-2;Q96T23 Q96T23-3 RSF1 Remodeling and spacing factor 1 1 S(0.158)T(0.158)DEY(0.088)S(0.597)EADEEEEEEEGKPSR 65.213 0.010383 13006000 431.54 183.91 463.77 453.25 202.8 198.2 220.67 312.31 335.08 423.42 TRUE FALSE 437.5828914 203.9899157 346.6855277 424.1805737 230.4247934 233.3479871 262.5409805 285.7773161 367.2659312 337.1267716 1.297977284 0.605083704 1.028353595 1.25822275 0.683495981 0.692166884 0.778760403 0.847685026 1.089400078 1 8.397147388 -5.231914925 23.71731533 0.882443447 1.297978603 0.283421709 0.195913881 7950.038185 6386151.175 0.05050606 5.051520711 5.86E-06 5.231914925 0.415535156 STDS(ph)PIIIEPLSKPDYR ddPTM_K562_Paclitaxel_30min_R1 3 STDSPIIIEPLSKPDYR 17 1 A0A0D9SEJ8;Q86YH2 A0A0D9SEJ8 ZNF280B Zinc finger protein 280B 1 S(0.008)T(0.008)DS(0.984)PIIIEPLSKPDYR;S(0.018)T(0.018)DS(0.964)PIIIEPLSKPDYR;S(0.18)T(0.18)DS(0.64)PIIIEPLSKPDYR 153.68 9.46E-08 122652000 6112.7 5148.6 11222.1 7305.7 4970.03 4720.9 4791.8 6733.5 6990.5 8426 TRUE FALSE 6198.296659 5710.741559 8388.942062 6837.145101 5647.032229 5558.08533 5701.019035 6161.447146 7661.968759 6708.776575 0.923908643 0.851234423 1.250442904 1.019134417 0.841738008 0.828479719 0.849785199 0.91841591 1.142081373 1 12.71183398 STDSEVSQS(ph)PAK ddPTM_K562_Paclitaxel_30min_R1 3 STDSEVSQSPAK 12 0 A0A0G2JNJ7;H7C148;H7C3F5;A0A2H2FJL5;B7Z6J7;O75175 A0A0G2JNJ7 CNOT3 CCR4-NOT transcription complex subunit 3 1 STDSEVSQS(1)PAK;STDSEVSQS(1)PAK;STDSEVS(0.003)QS(0.997)PAK 180.3 0.00028256 138922000 7154.6 6030.9 12597.8 8178.1 6022.7 5457 5220.4 7937.6 4954.2 9838.1 TRUE FALSE 7254.786474 6689.374057 9417.329582 7653.59327 6843.093705 6424.72233 6210.943648 7263.251335 5430.073046 7833.08982 0.926171746 0.853989193 1.202249661 0.977084834 0.873613588 0.820202816 0.792911072 0.9272524 0.693222364 1 12.93536579 -6.800865005 3.932093645 0.840194607 0.996803417 0.270808206 0.111889105 0.282372997 9.221422016 0.035084991 0.04194796 1.58E-07 6.800865005 0.15660881 STELVLS(ph)PDMPR ddPTM_K562_Paclitaxel_30min_R1 1 STELVLSPDMPR 12 0 Q8TDY2-2;Q8TDY2 Q8TDY2-2 RB1CC1 RB1-inducible coiled-coil protein 1 1 STELVLS(1)PDMPR 90.793 0.018155 0 530.99 421.1 533.27 606.29 324.15 428.26 219.99 634.48 412.28 445.21 TRUE FALSE 538.4254982 467.0771221 398.6393931 567.4052731 368.3047179 504.2058979 261.7319541 580.5769637 451.8813361 354.4759576 1.518933757 1.317655294 1.124587957 1.600687609 1.039011843 1.422398013 0.738363064 1.637845815 1.274786982 1 8.46954397 -6.776901397 24.99888785 1.206791265 1.366274179 0.125750853 0.258125175 650.2086465 1051248.804 0.078034525 0.088786101 1.67E-07 6.776901397 0.159482914 STETSDFENIES(ph)PLNER ddPTM_K562_Paclitaxel_30min_R1 4 STETSDFENIESPLNER 17 0 Q96K76-2;Q96K76-4;Q96K76 Q96K76-2 USP47 Ubiquitin carboxyl-terminal hydrolase 47 1 S(0.004)T(0.004)ET(0.008)S(0.046)DFENIES(0.937)PLNER;STETSDFENIES(1)PLNER;STETSDFENIES(1)PLNER;STETSDFENIES(1)PLNER 191.41 4.42E-11 114613100 4566.05 4603.73 5836.66 5168.8 4515.22 4649.83 4404.37 5463.61 3348.24 6030.77 TRUE FALSE 4629.988787 5106.38081 4363.122996 4837.296303 5130.269407 5474.412064 5240.076215 4999.442228 3669.853412 4801.695764 0.964240347 1.063453634 0.908662941 1.00741416 1.068428668 1.140099734 1.091297007 1.041182631 0.764282785 1 12.22932828 -8.728658855 24.91820773 0.882141384 1.037789857 0.364138253 0.081071878 168.1019681 127783.6064 0.055632772 0.021023851 1.87E-09 8.728658855 0.155648474 STFAGS(ph)PERESIHILSVDEK ddPTM_K562_Paclitaxel_30min_R1 1 STFAGSPERESIHILSVDEK 20 1 H0YE03;H7C3G7;Q2TBE0-3;Q2TBE0-2;Q2TBE0 H0YE03 CWF19L2 CWF19-like protein 2 1 S(0.131)T(0.131)FAGS(0.618)PERES(0.12)IHILSVDEK 58.073 0.02159 39937000 5658.1 4712.2 10240 6642.3 4624.8 4778.3 4710.3 6755.3 4515.5 7907.1 TRUE FALSE 5737.330857 5226.693932 7654.785353 6216.292608 5254.776059 5625.664414 5604.054836 6181.3951 4949.233951 6295.62868 0.911319766 0.830210007 1.215888951 0.987398229 0.834670583 0.893582627 0.890150153 0.981855096 0.786138161 1 12.62013474 -6.687333919 10.27947369 0.896288728 0.991755778 0.137653312 0.108105706 0.822626651 108.472021 0.032470508 0.041910029 2.05E-07 6.687333919 0.09546705 STFS(ph)PISDIGLAK ddPTM_K562_Paclitaxel_30min_R1 2 STFSPISDIGLAK 13 0 Q8TEK3-1;Q8TEK3;H7C2S2 Q8TEK3-1 DOT1L "Histone-lysine N-methyltransferase, H3 lysine-79 specific" 1 S(0.009)T(0.011)FS(0.98)PISDIGLAK;S(0.005)T(0.015)FS(0.979)PIS(0.001)DIGLAK 214.48 8.22E-16 11116500 5914 5092.3 9371.7 5883.6 4391 4542.1 3933.76 6131.6 5604.7 8095.7 TRUE FALSE 5996.814246 5648.294535 7005.698427 5506.25223 4989.12854 5347.577661 4680.170424 5610.682308 6143.056477 6445.791896 0.930345618 0.876276279 1.086863886 0.854239839 0.774013282 0.82962307 0.726081527 0.870441119 0.953033634 1 12.6541419 -6.486340104 24.98758043 0.841544377 0.958153149 0.213375985 0.089694387 791.7981288 541484.8117 0.025145658 0.037283168 3.26E-07 6.486340104 0.116608772 STFVQSPADACTPPDTSSASEDEGS(ph)LRR ddPTM_K562_Paclitaxel_30min_R1 1 STFVQSPADACTPPDTSSASEDEGSLRR 28 1 Q9P265 Q9P265 DIP2B Disco-interacting protein 2 homolog B 1 STFVQSPADACT(0.01)PPDT(0.176)S(0.176)S(0.176)AS(0.176)EDEGS(0.286)LRR 45.842 0.021908 20868000 894.14 529.7 791.12 751.3 670.69 715.54 790.3 840.39 834.46 1104.2 TRUE FALSE 906.6607187 587.5344373 591.3919716 703.1149807 762.0493329 842.4309723 940.2552994 768.993624 914.6136115 879.1634339 1.031276647 0.668288073 0.672675806 0.799754578 0.866789158 0.958218847 1.069488633 0.874687907 1.040322625 1 9.779987573 -7.064700385 2.200670366 0.988007576 0.775053629 0.435968803 0.105187095 0.290774557 2.795732504 0.038537701 0.04040229 8.62E-08 7.064700385 -0.212953948 STGS(ph)ATSLASQGER ddPTM_K562_Paclitaxel_30min_R1 3 STGSATSLASQGER 14 0 H0Y2V6;Q5SW79-2;Q5SW79-3;Q5SW79 H0Y2V6 CEP170 Centrosomal protein of 170 kDa 1 S(0.038)T(0.002)GS(0.959)AT(0.001)SLASQGER;S(0.001)TGS(0.952)AT(0.045)S(0.002)LASQGER;S(0.276)T(0.039)GS(0.604)AT(0.039)S(0.018)LAS(0.025)QGER 222.75 9.19E-26 225809000 3473.03 2809.5 4233.32 3540.97 3035.04 2988.66 2768.12 3719.84 2660.96 4015.07 TRUE FALSE 3521.663135 3116.250711 3164.566009 3313.868033 3448.463832 3518.656888 3293.356319 3403.816373 2916.557097 3196.79653 1.101622547 0.974804208 0.989917869 1.036621506 1.078724842 1.100682153 1.030205172 1.06475853 0.91233742 1 11.64241121 -8.751854934 24.99927678 0.956168701 1.044765547 0.398413594 0.044649637 185.8570116 484782.973 0.032200949 0.011819864 1.77E-09 8.751854934 0.088596846 STIGVMVT(ph)ASHNPEEDNGVK ddPTM_K562_Paclitaxel_30min_R1 1 STIGVMVTASHNPEEDNGVK 20 0 D6RC77;D6RCQ8;D6RF77;A0A494C163;A0A494C099;A0A494C0G1;H0Y987;O95394;O95394-3;O95394-4 D6RC77 PGM3 Phosphoacetylglucosamine mutase 1 STIGVMVT(0.996)AS(0.004)HNPEEDNGVK 128.8 3.55E-07 126020000 4351.6 3296.9 6987.2 4112.4 3229.6 2711.1 3085.1 4399.2 2610.1 6171.4 TRUE FALSE 4412.535826 3656.866691 5223.194943 3848.64907 3669.526198 3191.875519 3670.48162 4025.460501 2860.811767 4913.665292 0.898013105 0.744223807 1.062993638 0.783254219 0.746800195 0.649591563 0.746994637 0.819237832 0.582215433 1 12.26258387 -6.504236341 24.1126096 0.744563493 0.892180292 0.205947733 0.125424831 694.1438403 897824.818 0.03363672 0.048861123 3.13E-07 6.504236341 0.147616798 STIGVMVTAS(ph)HNPEEDNGVK ddPTM_K562_Paclitaxel_30min_R1 2 STIGVMVTASHNPEEDNGVK 20 0 D6RC77;D6RCQ8;D6RF77;A0A494C163;A0A494C099;A0A494C0G1;H0Y987;O95394;O95394-3;O95394-4 D6RC77 PGM3 Phosphoacetylglucosamine mutase 1 STIGVMVT(0.005)AS(0.995)HNPEEDNGVK;STIGVMVT(0.435)AS(0.565)HNPEEDNGVK 133.15 8.56E-10 193174000 9590.7 7337.4 15117.3 9780.6 6873.6 6469.4 7188.3 10745 6416 13374.9 TRUE FALSE 9724.99939 8138.522145 11300.75065 9153.316092 7809.900691 7616.657255 8552.2424 9832.145182 7032.285467 10649.08804 0.913223682 0.764245926 1.061194217 0.859539902 0.733386809 0.715240331 0.803096225 0.923285181 0.660365042 1 13.37844227 -6.527121465 24.7359986 0.797303129 0.908414289 0.147871188 0.114329371 187.1869074 1091331.241 0.032627678 0.04230238 2.97E-07 6.527121465 0.11111116 STITS(ph)REIQTAVR ddPTM_K562_Paclitaxel_30min_R1 1 STITSREIQTAVR 13 1 Q99880;Q99877;Q5QNW6-2;P57053;O60814;P58876;P62807;Q5QNW6;Q93079;U3KQK0;Q99879;P06899;P23527;P33778;Q16778 Q99880 HIST1H2BL;HIST1H2BN;HIST2H2BF;H2BFS;HIST1H2BK;HIST1H2BD;HIST1H2BC;HIST1H2BH;HIST1H2BM;HIST1H2BJ;HIST1H2BO;HIST1H2BB;HIST2H2BE Histone H2B type 1-L;Histone H2B type 1-N;Histone H2B type 2-F;Histone H2B type F-S;Histone H2B type 1-K;Histone H2B type 1-D;Histone H2B type 1-C/E/F/G/I;Histone H2B type 1-H;Histone H2B;Histone H2B type 1-M;Histone H2B type 1-J;Histone H2B type 1-O;Histone H2B type 1-B;Histone H2B type 2-E 1 STIT(0.004)S(0.996)REIQTAVR 107.74 0.015571 12720000 2073 1943.2 3225.8 3079.7 2434.3 2224.4 1681.4 2630.1 2410.5 2584.1 TRUE FALSE 2102.028396 2155.365147 2411.406894 2882.181826 2765.892873 2618.866108 2000.436873 2406.656588 2642.039295 2057.459002 1.021662349 1.047585952 1.172031565 1.400845326 1.34432466 1.272864298 0.972285169 1.169722744 1.284127311 1 11.00664797 -11.15752593 15.61038174 0.999990276 1.189294348 0.148538217 0.134432598 0 0 0.143449148 0.034791529 6.96E-12 11.15752593 0.189304072 STLRDQINSDHR ddPTM_K562_Paclitaxel_30min_R1 3 STLRDQINSDHR 12 1 Q12874 Q12874 SF3A3 Splicing factor 3A subunit 3 0 ;; 88.441 0.021232 13281400 5831.3 5694.1 7209.4 6819.3 5529.5 6208.5 5310.2 6219.3 8441.8 6920.8 FALSE TRUE 5912.956191 6315.801094 5389.297805 6381.94062 6282.711515 7309.490303 6317.782729 5690.931645 9252.672609 5510.337161 1.073066133 1.146173258 0.978034129 1.158176067 1.140168257 1.326505092 1.146532879 1.032773763 1.679148179 1 12.42792488 -6.805959587 2.125134301 1.232385315 1.076409307 0.129853101 0.181794994 0.669715504 6.213491339 0.060088177 0.075088743 1.56E-07 6.805959587 -0.155976008 STLTSSYNCPS(ph)PYADGR ddPTM_K562_Paclitaxel_30min_R1 1 STLTSSYNCPSPYADGR 17 0 Q9HCU4 Q9HCU4 CELSR2 Cadherin EGF LAG seven-pass G-type receptor 2 1 STLTSS(0.003)YNCPS(0.996)PYADGR 218.05 1.35E-23 25195000 851.13 722.94 880.9 735.14 509.88 479.63 650.67 500.07 848.55 761.04 TRUE FALSE 863.048446 801.873034 658.5059002 687.9914108 579.3342883 564.6856462 774.1312358 457.5859322 930.0570189 605.9396303 1.424314243 1.323354661 1.086751662 1.135412468 0.956092421 0.931917336 1.277571555 0.755167527 1.534900463 1 9.243030255 -5.666985553 2.528988307 1.071018943 1.421002453 0.254908361 0.200016211 0.372137185 4.522909581 0.050046973 0.191664825 2.15E-06 5.666985553 0.34998351 STLTSSYNCPSPY(ph)ADGR ddPTM_K562_Paclitaxel_30min_R1 1 STLTSSYNCPSPYADGR 17 0 Q9HCU4 Q9HCU4 CELSR2 Cadherin EGF LAG seven-pass G-type receptor 2 1 STLTSSYNCPS(0.096)PY(0.904)ADGR 205.02 5.22E-17 24206000 1265.8 999.85 1364.3 1155 1101 1006.3 1025.7 1059.7 1229 1347.6 TRUE FALSE 1283.525105 1109.017004 1019.865592 1080.92347 1250.97484 1184.753176 1220.32122 969.6718706 1347.050941 1072.95838 1.196248735 1.033606731 0.950517383 1.007423484 1.165911803 1.10419304 1.13734255 0.903736704 1.255454979 1 10.0673784 -5.254038091 23.81927771 1.060740155 1.196248863 0.13846839 0.100398417 936.5820514 3014016.662 0.024296862 0.236865035 5.57E-06 5.254038091 0.135508708 STNGDTFLGGEDFDQALLR ddPTM_K562_Paclitaxel_30min_R1 2 STNGDTFLGGEDFDQALLR 19 0 P38646 P38646 HSPA9 "Stress-70 protein, mitochondrial" 0 ; 151.48 5.50E-31 10283000 495.13 463.93 431.03 597.48 408.34 343.92 419.18 467.54 272.64 419.25 FALSE TRUE 502.0633476 514.5834463 322.2111456 559.160307 463.9628213 404.9093831 498.7172167 427.8195587 298.8282902 333.8066199 1.504054497 1.541561538 0.965262899 1.675102511 1.38991498 1.213005851 1.494030337 1.281638929 0.895213793 1 8.382868755 -8.657976383 4.333306048 0.948823528 1.389565973 0.473573328 0.186407566 0.184003336 5.892885727 0.139742495 0.046921867 2.20E-09 8.657976383 0.440742444 STNIAAAASEPHS(ph) ddPTM_K562_Paclitaxel_30min_R1 1 STNIAAAASEPHS 13 0 Q7Z4H3-2;Q7Z4H3 Q7Z4H3-2 HDDC2 HD domain-containing protein 2 1 STNIAAAASEPHS(1) 89.507 0.017178 14915000 1119.8 1117.1 1756.8 1355 1350.6 1146 1065.5 1157.5 1099.3 1765.1 TRUE FALSE 1135.480655 1239.068756 1313.274112 1268.096365 1534.574586 1349.227009 1267.673063 1059.16315 1204.892677 1405.371651 0.807957563 0.881666252 0.934467485 0.902321008 1.091935065 0.960049968 0.902019805 0.753653419 0.857348073 1 10.45673599 -10.69299162 10.6023471 0.999999999 0.902952027 0.109052889 0.085916286 0 0 0.091572293 0.022209543 2.03E-11 10.69299162 -0.097047972 STPEDHRNSSTET(ph)DQQPHS(ph)PDSSSSVHSIR ddPTM_K562_Paclitaxel_30min_R1 1 STPEDHRNSSTETDQQPHSPDSSSSVHSIR 30 1 Q92613 Q92613 JADE3 Protein Jade-3 2 S(0.014)T(0.015)PEDHRNS(0.21)S(0.228)T(0.246)ET(0.288)DQQPHS(0.52)PDS(0.13)S(0.121)S(0.112)S(0.104)VHS(0.013)IR 52.577 0.0044419 4457100 944.41 722.25 1079.1 917.7 662 713.05 694.81 791.87 970.61 786.36 TRUE FALSE 957.6346538 801.1076975 806.6678589 858.8428295 752.1756078 839.4994058 826.6465703 724.5957008 1063.841427 626.0994004 1.52952495 1.279521586 1.288402222 1.371735589 1.201367718 1.340840456 1.32031203 1.157317353 1.699157397 1 9.290247909 -12.17770615 2.535893677 0.04330095 1.338942201 0.329529176 0.150167338 43621947.43 34692616.04 230118889.3 0.034754008 6.64E-13 12.17770615 1.295641251 STPESGDS(ph)DKESVGSSSTSNEGGR ddPTM_K562_Paclitaxel_30min_R1 1 STPESGDSDKESVGSSSTSNEGGR 24 1 Q6GQQ9-2;Q6GQQ9 Q6GQQ9-2 OTUD7B OTU domain-containing protein 7B 1 STPES(0.022)GDS(0.563)DKES(0.07)VGS(0.041)S(0.134)S(0.134)T(0.018)S(0.018)NEGGR 54.047 0.016822 14484000 1047.9 773.88 2102.8 1014.5 897.91 792.21 701.38 855.44 922.74 1410.1 TRUE FALSE 1062.573833 858.3748355 1571.922133 949.4345107 1020.220544 932.6973203 834.4631936 782.7650325 1011.3733 1122.720846 0.946427455 0.764548764 1.400100603 0.845655012 0.908703662 0.830747308 0.743250824 0.697203615 0.90082348 1 10.13278354 -6.479777351 24.99824313 0.830351775 1.028627904 0.209889013 0.167238643 708.4225609 410875.4405 0.046999898 0.069706423 3.31E-07 6.479777351 0.198276129 STPFIVPS(ph)SPTEQEGR ddPTM_K562_Paclitaxel_30min_R1 3 STPFIVPSSPTEQEGR 16 0 A6NNK5;Q12888;Q12888-3;Q12888-2;C9JXV0 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 STPFIVPS(0.495)S(0.495)PT(0.01)EQEGR;STPFIVPS(0.717)S(0.281)PT(0.003)EQEGR;STPFIVPS(0.627)S(0.37)PT(0.003)EQEGR 229.92 1.68E-39 1259810000 9070.4 8525.3 12158.5 10361.6 8843.1 8269.2 8212.1 10558.7 6909.1 11272.7 TRUE FALSE 9197.413585 9456.121085 9088.936301 9697.053353 10047.67993 9735.626515 9770.303105 9661.67253 7572.749926 8975.317552 1.0247452 1.053569529 1.012659023 1.0804134 1.119479046 1.084711093 1.088574644 1.076471386 0.843730585 1 13.13174727 -8.7433017 24.99738908 0.921865303 1.068709251 0.618596001 0.045759437 129.8532814 178965.5297 0.03070017 0.011552812 1.81E-09 8.7433017 0.146843948 STPFIVPSS(ph)PTEQEGR ddPTM_K562_Paclitaxel_30min_R1 1 STPFIVPSSPTEQEGR 16 0 A6NNK5;Q12888;Q12888-3;Q12888-2;C9JXV0 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 STPFIVPS(0.159)S(0.793)PT(0.048)EQEGR 147.75 8.11E-08 274050000 3650.3 3600.4 4554.5 3757.9 3419.2 3089.6 3554.4 3959.8 2242.6 4515.4 TRUE FALSE 3701.415462 3993.503848 3404.660146 3516.885114 3884.952928 3637.49718 4228.828845 3623.390274 2458.01175 3595.159001 1.029555427 1.110800342 0.947012398 0.978227976 1.080606706 1.011776441 1.176256417 1.00785258 0.683700429 1 11.81183986 -8.574665443 12.10333481 0.842779577 1.046969132 0.427893615 0.093917243 0.739043324 170.129364 0.060047488 0.02267587 2.66E-09 8.574665443 0.204189554 STPLAS(ph)PSPSPGR ddPTM_K562_Paclitaxel_30min_R1 1 STPLASPSPSPGR 13 0 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 STPLAS(0.999)PS(0.001)PSPGR 116.19 0.0030165 12153000 1144.7 1253.5 1437.3 1122 1215.7 1089.5 1028.8 1286.6 988.18 1407.1 TRUE FALSE 1160.729332 1390.361369 1074.435839 1050.039942 1381.298922 1282.707528 1224.009429 1177.295299 1083.099104 1120.332248 1.036058128 1.24102593 0.959033216 0.937257625 1.232936859 1.144934934 1.09254146 1.050844784 0.966765981 1 10.12971093 -8.563180802 3.275939905 0.984031031 1.093592534 0.169270958 0.095062735 0.470420041 10.09341979 0.077181408 0.026320107 2.73E-09 8.563180802 0.109561503 STPLASPS(ph)PSPGRS(ph)PQR ddPTM_K562_Paclitaxel_30min_R1 1 STPLASPSPSPGRSPQR 17 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 2 STPLASPS(0.999)PS(0.035)PGRS(0.965)PQR 162.82 1.25E-40 0 1779.6 1878.9 2237 2015.2 1914.2 1716.6 1811.2 1787.1 1980.2 2662.4 TRUE FALSE 1804.519891 2084.044656 1672.241683 1885.954092 2174.946448 2021.014908 2154.865745 1635.2747 2170.407058 2119.801419 0.851268366 0.983132023 0.78886714 0.889684324 1.026014243 0.953398224 1.016541326 0.771428251 1.023872821 1 11.04971341 -6.553995581 23.77773627 0.95594694 0.877623822 0.20516276 0.08300222 207.9733362 158919.8608 0.024086653 0.03109621 2.79E-07 6.553995581 -0.078323118 STPLASPS(ph)PSPGRSPQR ddPTM_K562_Paclitaxel_30min_R1 1 STPLASPSPSPGRSPQR 17 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 STPLAS(0.06)PS(0.455)PS(0.422)PGRS(0.064)PQR 136.01 2.84E-07 92449000 6265.6 6201.3 8820.2 7618.4 6053.8 5744.6 5406.5 7200.2 6480.1 7499.3 TRUE FALSE 6353.337731 6878.378905 6593.431423 7129.789923 6878.430052 6763.324152 6432.355151 6588.498068 7102.542559 5970.938544 1.064043397 1.151976168 1.104253774 1.194081947 1.151984734 1.132707045 1.077277065 1.103427547 1.189518617 1 12.543742 -10.32680102 6.273988135 1.000000001 1.130103505 0.470119358 0.041378452 4433840.278 1216328.65 0.040043594 0.010010898 4.71E-11 10.32680102 0.130103504 STPLASPSPSPGRS(ph)PQR ddPTM_K562_Paclitaxel_30min_R1 4 STPLASPSPSPGRSPQR 17 1 Q8WYP5;Q8WYP5-3;Q8WYP5-2 Q8WYP5 AHCTF1 Protein ELYS 1 STPLASPSPSPGRS(1)PQR;STPLASPSPS(0.031)PGRS(0.969)PQR;STPLASPS(0.004)PS(0.373)PGRS(0.623)PQR;STPLASPSPS(0.19)PGRS(0.81)PQR 146.68 1.00E-08 533520000 5297.74 4744.71 6386.5 5574.56 5004.45 4610.64 4079.03 5423.51 5502.08 6320.92 TRUE FALSE 5371.924705 5262.753483 4774.149088 5217.032672 5686.140816 5428.272267 4853.004649 4962.748973 6030.579368 5032.713034 1.067401354 1.045709034 0.948623348 1.036624309 1.12983609 1.078597613 0.964291947 0.986098142 1.198276025 1 12.29712062 -6.524943206 24.94839765 1.057579429 1.018013153 0.057345544 0.071138626 209.5438936 2532251.051 0.0215567 0.027992392 2.99E-07 6.524943206 -0.039566276 STPQPPS(ph)GKTTPNSGDVQVTEDAVRR ddPTM_K562_Paclitaxel_30min_R1 1 STPQPPSGKTTPNSGDVQVTEDAVRR 26 2 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 1 S(0.001)T(0.001)PQPPS(0.991)GKT(0.003)T(0.003)PNS(0.001)GDVQVTEDAVRR 65.365 0.00098888 30173000 974.7 830.14 1728.6 1115 940.39 925.14 678.79 1009.1 1364.2 1125 TRUE FALSE 988.3488072 920.7774926 1292.193551 1043.488891 1068.487039 1089.200589 807.586859 923.3706564 1495.237505 895.7243825 1.103407283 1.027969664 1.442624066 1.164966491 1.192874795 1.21599971 0.90160196 1.030864711 1.669305352 1 9.806911068 STPQPPSGKTT(ph)PNSGDVQVTEDAVRR ddPTM_K562_Paclitaxel_30min_R1 1 STPQPPSGKTTPNSGDVQVTEDAVRR 26 2 M0QXD6;P35269 M0QXD6 GTF2F1 General transcription factor IIF subunit 1 1 STPQPPS(0.098)GKT(0.139)T(0.623)PNS(0.139)GDVQVT(0.001)EDAVRR 70.897 0.0074274 23784000 1436.4 1273.2 2613 1780 1051.1 866.35 785.85 1541.7 1520.1 1469.7 TRUE FALSE 1456.514032 1412.212282 1953.315833 1665.838767 1194.277615 1019.985008 934.9609351 1410.722962 1666.112397 1170.174333 1.244698324 1.206839222 1.669251989 1.4235817 1.020598027 0.87165218 0.798992858 1.205566489 1.423815537 1 10.19250776 -6.762305466 24.99224453 1.041904304 1.393514678 0.400044948 0.199191453 25.10485191 724447.9963 0.066231471 0.079566925 1.73E-07 6.762305466 0.351610373 STPSHGSVSSLNST(ph)GSLSPK ddPTM_K562_Paclitaxel_30min_R1 1 STPSHGSVSSLNSTGSLSPK 20 0 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2;M0R2S2 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 STPSHGSVSSLNS(0.015)T(0.685)GS(0.229)LS(0.071)PK 143 4.11E-13 34122000 2674.4 2205.9 4432.4 2984 2259.4 2074.7 1792.5 2598.8 2385.1 3554.8 TRUE FALSE 2711.849851 2446.747622 3313.385801 2792.619596 2567.168532 2442.618915 2132.617518 2378.015719 2614.199512 2830.329809 0.958139169 0.864474385 1.170671273 0.986676389 0.907020985 0.863015648 0.753487283 0.840190324 0.92363777 1 11.46675446 -6.890043652 3.169571501 0.860138356 0.998586891 0.265271012 0.092036907 0.313478422 6.276484415 0.030903842 0.035762956 1.29E-07 6.890043652 0.138448535 STPSHGSVSSLNSTGSLS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 STPSHGSVSSLNSTGSLSPK 20 0 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2;M0R2S2 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 STPSHGSVSSLNSTGSLS(1)PK;STPSHGSVSSLNST(0.002)GS(0.021)LS(0.977)PK 228.38 2.03E-46 48746000 2626.59 2406.93 4755.6 3327.66 2560.52 2315.5 2151.41 2860.69 2963.76 4131.6 TRUE FALSE 2663.370364 2669.726757 3554.989963 3114.238782 2909.306174 2726.121414 2559.628816 2617.656529 3248.44239 3289.577652 0.809639001 0.811571283 1.080682793 0.946698668 0.884401124 0.828714717 0.778102567 0.795742434 0.987495276 1 11.68368665 -5.592096077 24.99999999 0.901047548 0.810053 0.157658916 0.09128615 91.99814827 33226.25822 0.025039713 0.066248875 2.56E-06 5.592096077 -0.090994548 STQIENQHQGAQDT(ph)SDLMSPSKR ddPTM_K562_Paclitaxel_30min_R1 1 STQIENQHQGAQDTSDLMSPSKR 23 1 H0YBW3;Q9NVR2 H0YBW3 INTS10 Integrator complex subunit 10 1 STQIENQHQGAQDT(0.636)S(0.175)DLMS(0.136)PS(0.052)KR 79.993 0.0026306 0 645.23 574.88 1178.4 833.15 768.08 746.12 716.54 751.99 862.2 922.48 TRUE FALSE 654.2652107 637.6473425 880.8983457 779.715488 872.7054997 878.433906 852.4997244 688.1037557 945.0181624 734.4780696 0.890789307 0.868163896 1.199352822 1.061591245 1.188198172 1.19599746 1.160687786 0.93686086 1.286652661 1 9.520575605 -5.753184365 24.9965447 1.129691378 0.879476463 0.505542881 0.098573302 135.8717315 411416.443 0.023880834 0.06094805 1.77E-06 5.753184365 -0.250214915 STQIENQHQGAQDTSDLMS(ph)PSKR ddPTM_K562_Paclitaxel_30min_R1 2 STQIENQHQGAQDTSDLMSPSKR 23 1 H0YBW3;Q9NVR2 H0YBW3 INTS10 Integrator complex subunit 10 1 STQIENQHQGAQDT(0.26)S(0.26)DLMS(0.354)PS(0.125)KR;STQIENQHQGAQDT(0.21)S(0.21)DLMS(0.41)PS(0.17)KR 71.289 0.0014955 39274000 1696.15 1293.71 2846.32 1985.11 1306.98 1331.12 1227.05 1956.81 1614.35 2408.68 TRUE FALSE 1719.901333 1434.961633 2127.731313 1857.79393 1485.012803 1567.175442 1459.876332 1790.566776 1769.415531 1917.789694 0.896814358 0.748237222 1.109470616 0.968716192 0.774335584 0.817177946 0.761228583 0.933661695 0.922632725 1 10.90522881 -8.917978288 1.982407191 0.994780975 0.871810173 0.122890958 0.104598326 0.71688103 6.188509238 0.105661431 0.02991352 1.21E-09 8.917978288 -0.122970802 STQIENQHQGAQDTSDLMSPS(ph)KR ddPTM_K562_Paclitaxel_30min_R1 1 STQIENQHQGAQDTSDLMSPSKR 23 1 H0YBW3;Q9NVR2 H0YBW3 INTS10 Integrator complex subunit 10 1 STQIENQHQGAQDT(0.065)S(0.065)DLMS(0.352)PS(0.519)KR 61.304 0.0052134 29006000 2068.4 2249.5 4059.9 2553 1950.4 1880.7 1518.9 2444.4 2280.9 2939.1 TRUE FALSE 2097.363982 2495.108017 3034.928033 2389.262007 2216.077501 2214.215739 1807.103346 2236.732963 2499.990636 2340.109807 0.896267336 1.066235443 1.296916933 1.021004228 0.946997228 0.946201641 0.772230149 0.955823934 1.068321935 1 11.19236051 -6.596580342 4.538893748 0.938229976 1.095074367 0.222402224 0.114248833 0.290677873 11.39723671 0.035887259 0.047324928 2.53E-07 6.596580342 0.156844391 STRPHS(ph)LDR ddPTM_K562_Paclitaxel_30min_R1 1 STRPHSLDR 9 1 Q3KP66-3;Q3KP66 Q3KP66-3 C1orf106 Uncharacterized protein C1orf106 1 S(0.036)T(0.155)RPHS(0.809)LDR 103.34 0.027915 767850000 0 66.488 178.38 0 0 167.65 0 0 67.098 0 TRUE FALSE 0 73.74738469 133.3457628 0 0 197.3803736 0 0 73.5430627 0 0 STRS(ph)VENLPECGITHEQR ddPTM_K562_Paclitaxel_30min_R1 2 STRSVENLPECGITHEQR 18 1 F8W860;A0A0B4J1S8;Q9UBF8-3;Q9UBF8-2;Q9UBF8 F8W860 PI4KB Phosphatidylinositol 4-kinase beta 1 S(0.074)T(0.074)RS(0.853)VENLPECGITHEQR;S(0.013)T(0.013)RS(0.973)VENLPECGITHEQR 124.45 3.97E-06 213500000 3039.5 2733.8 3682.6 3023.2 2383 2551.6 2193.6 2768.3 5078.9 2745.9 TRUE FALSE 3082.062378 3032.285529 2752.882084 2829.305483 2707.604945 3004.090434 2609.824149 2533.115636 5566.751038 2186.284073 1.409726401 1.386958615 1.259160289 1.29411613 1.238450656 1.37406226 1.193726003 1.158639752 2.546215795 1 11.09426515 STS(ph)ATDTHHVEMAR ddPTM_K562_Paclitaxel_30min_R1 1 STSATDTHHVEMAR 14 0 H3BQP2;H3BNP3;H3BTL2;H3BS02;O14874-2;O14874-3;O14874 H3BQP2 BCKDK "[3-methyl-2-oxobutanoate dehydrogenase [lipoamide]] kinase, mitochondrial" 1 S(0.204)T(0.276)S(0.513)AT(0.007)DTHHVEMAR 142.91 6.53E-06 5074600 830.88 658.12 794.19 894.26 648.59 944.45 799.69 678.25 594.96 914.49 TRUE FALSE 842.5148835 729.9757672 593.6869121 836.9061662 736.9389387 1111.934947 951.4270028 620.628429 652.1085664 728.116436 1.157115596 1.002553618 0.81537359 1.149412546 1.012116884 1.527138919 1.306696231 0.85237525 0.895610282 1 9.508025366 -8.282739304 24.66305646 0.905494544 1.131454538 0.238095683 0.181898742 1165.039167 1348982.971 0.109995574 0.052926157 5.22E-09 8.282739304 0.225959994 STS(ph)FRQGPEESGLGDGTGPK ddPTM_K562_Paclitaxel_30min_R1 1 STSFRQGPEESGLGDGTGPK 20 1 A0A0D9SFK2;Q92614-3;Q92614-4;Q92614;Q92614-5;Q92614-2 A0A0D9SFK2 MYO18A Unconventional myosin-XVIIIa 1 S(0.027)T(0.027)S(0.945)FRQGPEES(0.001)GLGDGTGPK 122.1 7.08E-06 27069000 3148.7 2687.8 5406.1 3429 2809.9 2689.8 2403.9 3799.3 3900.1 4448.7 TRUE FALSE 3192.791515 2981.263094 4041.263193 3209.079288 3192.655952 3166.798263 2860.027476 3476.525751 4274.722031 3542.052498 0.901395876 0.84167671 1.140938254 0.905994276 0.901357604 0.894057405 0.807449206 0.981500345 1.206848863 1 11.79036988 -8.549387367 9.97246356 1.100848567 0.916123007 0.385995855 0.095040254 0.39562902 140.6242822 0.063765587 0.02425737 2.82E-09 8.549387367 -0.184725561 STS(ph)GPRPGCQPSSPCVPK ddPTM_K562_Paclitaxel_30min_R1 2 STSGPRPGCQPSSPCVPK 18 1 O14545 O14545 TRAFD1 TRAF-type zinc finger domain-containing protein 1 1 S(0.163)T(0.163)S(0.675)GPRPGCQPSSPCVPK;S(0.045)T(0.045)S(0.91)GPRPGCQPSSPCVPK 117.55 0.00013478 46856000 3243.5 2978.4 5946.4 3959.9 2781 3143 2703.4 3517.9 4141.4 4545.2 TRUE FALSE 3288.919007 3303.591784 4445.157776 3705.929738 3159.819283 3700.36692 3216.356037 3219.032437 4539.199974 3618.885745 0.908820902 0.912875403 1.228322221 1.024052705 0.873147014 1.022515542 0.888769711 0.889509275 1.254308728 1 11.82132984 -8.751343726 24.99989129 1.12715441 0.973124036 0.229857248 0.115915132 280.9775133 695796.9667 0.082103895 0.03023487 1.77E-09 8.751343726 -0.154030374 STS(ph)HDRVPQSVQIR ddPTM_K562_Paclitaxel_30min_R1 1 STSHDRVPQSVQIR 14 1 Q5T5U3;A0A087WW76;A0A452Q6Z5;E7ESW5;A0A1B0GV73;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 S(0.01)T(0.12)S(0.87)HDRVPQSVQIR 118.16 0.0047936 6851700 2653.1 2683.5 2957.5 2972.7 2808.3 1987.1 2181 2459.1 2545.1 2717.6 TRUE FALSE 2690.251586 2976.493605 2210.842547 2782.044327 3190.838005 2339.484285 2594.833364 2250.184106 2789.568227 2163.751628 1.243327353 1.375617038 1.021763551 1.28575031 1.4746785 1.081216649 1.199228844 1.039945656 1.289227558 1 11.07931919 STS(ph)PIIGSPPVR ddPTM_K562_Paclitaxel_30min_R1 1 STSPIIGSPPVR 12 0 Q86TB9-2;Q86TB9-4;Q86TB9 Q86TB9-2 PATL1 Protein PAT1 homolog 1 1 S(0.002)T(0.002)S(0.997)PIIGSPPVR 207.34 6.25E-10 90601000 2073.6 2085.8 2991.3 2383.1 2405.2 2514 1694.8 2310.3 2010 2417.3 TRUE FALSE 2102.636798 2313.534698 2236.109319 2230.258632 2732.82896 2959.822602 2016.379453 2114.025595 2203.069481 1924.652933 1.092475823 1.20205293 1.161824701 1.158784835 1.419907409 1.537847448 1.047658733 1.098393148 1.144658054 1 10.9103826 STS(ph)PPPS(ph)PEVWADSR ddPTM_K562_Paclitaxel_30min_R1 1 STSPPPSPEVWADSR 15 0 Q08495-3;Q08495-2;Q08495;E5RFK4;E5RGQ7;E5RJC0;E5RGQ0;E5RJ61 Q08495-3 DMTN Dematin 2 S(0.05)T(0.032)S(0.918)PPPS(1)PEVWADSR 133.25 0.00013168 46400000 3054 2667.4 3774.1 3236.4 2950.3 2468.2 2730.2 3220 2165.5 3451.9 TRUE FALSE 3096.765422 2958.635753 2821.281778 3028.83179 3352.180809 2905.900615 3248.241197 2946.440901 2373.505951 2748.400885 1.126751719 1.076493523 1.026517563 1.102034207 1.219684081 1.057305952 1.181865868 1.072056452 0.86359525 1 11.42437674 -8.627125401 5.930336328 0.93485657 1.110862051 0.572931596 0.061546901 0.145996427 7.066523173 0.043042957 0.015633463 2.36E-09 8.627125401 0.176005482 STS(ph)PPPSPEVWADSR ddPTM_K562_Paclitaxel_30min_R1 1 STSPPPSPEVWADSR 15 0 Q08495-3;Q08495-2;Q08495;E5RFK4;E5RGQ7;E5RJC0;E5RGQ0;E5RJ61 Q08495-3 DMTN Dematin 1 S(0.002)T(0.072)S(0.926)PPPSPEVWADSR 142.95 3.80E-06 236010000 2387.7 2037.6 2895.7 2793.6 2453.2 2298.4 2043 2495.3 2128.2 2633 TRUE FALSE 2421.135167 2260.072059 2164.644721 2614.431 2787.367373 2705.988969 2430.648585 2283.30869 2332.623119 2096.393155 1.15490511 1.078076435 1.032556664 1.247109109 1.329601447 1.290783154 1.159443103 1.089160535 1.112683999 1 11.03369359 -8.789854871 1.347437634 1.01254296 1.185009278 0.294500799 0.087360472 0.604460536 2.270469724 0.095809565 0.029948136 1.62E-09 8.789854871 0.172466318 STS(ph)PSAAGGQQK ddPTM_K562_Paclitaxel_30min_R1 1 STSPSAAGGQQK 12 0 Q2TB10 Q2TB10 ZNF800 Zinc finger protein 800 1 S(0.215)T(0.215)S(0.568)PS(0.003)AAGGQQK 131.06 0.00074414 3718800 4043.2 3627.4 7259.2 4241 3570.2 3836.8 3088.8 4508.7 3473 5173.2 TRUE FALSE 4099.817274 4023.451799 5426.525179 3969.001242 4056.521684 4517.202609 3674.883675 4125.657793 3806.597168 4118.899 0.995367275 0.976827011 1.317469833 0.963607324 0.984855828 1.096701475 0.892200482 1.001640922 0.924178322 1 12.00804303 -7.249827574 1.1006259 0.960794506 1.072141089 0.142741671 0.104459314 0.97879954 2.472035923 0.056657067 0.051709866 5.63E-08 7.249827574 0.111346583 STS(ph)PTFNK ddPTM_K562_Paclitaxel_30min_R1 1 STSPTFNK 8 0 Q9BX63 Q9BX63 BRIP1 Fanconi anemia group J protein 1 S(0.1)T(0.089)S(0.806)PT(0.005)FNK 94.409 0.015355 14026000 3520.2 3381.5 6344 4217.8 3437.5 3022.3 3004 4095 2828.5 5584.8 TRUE FALSE 3569.493661 3750.703605 4742.378738 3947.289186 3905.745697 3558.26247 3573.993318 3747.10419 3100.190063 4446.614694 0.802744089 0.843496427 1.06651443 0.887706594 0.878363871 0.800218304 0.803756017 0.842686953 0.697202316 1 12.11849168 -7.062483792 3.153838397 0.817589723 0.906900849 0.106427646 0.094714188 0.497873682 9.762540069 0.032435478 0.033823952 8.66E-08 7.062483792 0.089311126 STS(ph)PVTDPSIPIR ddPTM_K562_Paclitaxel_30min_R1 2 STSPVTDPSIPIR 13 0 A0A087WU18;Q99607 A0A087WU18 ELF4 ETS-related transcription factor Elf-4 1 S(0.004)T(0.004)S(0.967)PVT(0.024)DPSIPIR;ST(0.002)S(0.646)PVT(0.351)DPSIPIR 203.74 3.04E-10 354660000 12775.4 10786.1 14507.8 12498.7 10447.2 10737.2 10444.7 12373.2 12037.4 13264.7 TRUE FALSE 12954.29502 11963.76287 10845.12646 11697.08932 11870.28551 12641.29166 12426.5273 11322.01943 13193.64605 10561.34686 1.226576041 1.132787611 1.026869641 1.107537654 1.123936717 1.196939352 1.176604411 1.072024201 1.249238968 1 13.36650621 -5.271777035 5.535630885 1.123512392 1.229683132 0.163579029 0.071796325 0.254088883 30.21320765 0.017501577 0.100385686 5.35E-06 5.271777035 0.10617074 STS(ph)PVTDPSIPIRK ddPTM_K562_Paclitaxel_30min_R1 1 STSPVTDPSIPIRK 14 1 A0A087WU18;Q99607 A0A087WU18 ELF4 ETS-related transcription factor Elf-4 1 S(0.127)T(0.127)S(0.719)PVT(0.027)DPSIPIRK 75.376 0.024663 19490000 3128.4 2490.7 4768.9 3238 2737.4 2410.9 2468.7 3163.9 3182.4 3958.9 TRUE FALSE 3172.207252 2762.643049 3564.932214 3030.329173 3110.280225 2838.439264 2937.122938 2895.106947 3488.083739 3152.074007 1.006387301 0.87645247 1.130979858 0.961376277 0.986740863 0.900498928 0.931806465 0.918476832 1.10659957 1 11.62208569 -8.758477967 24.99998464 1.053299783 0.964200395 0.200765744 0.07119727 116.5083855 983622.7629 0.052578113 0.01792022 1.74E-09 8.758477967 -0.089099387 STS(ph)SHGTDEMESSSYR ddPTM_K562_Paclitaxel_30min_R1 1 STSSHGTDEMESSSYR 16 0 Q5JRC6;A0A0D9SGE8;Q8IWS0-2;Q8IWS0-4;Q8IWS0-3;Q8IWS0-5;Q8IWS0 Q5JRC6;Q8IWS0-5 PHF6 PHD finger protein 6 1 STS(0.996)S(0.004)HGTDEMESSSYR 129.29 1.46E-05 6677800 1400.8 1361 1695.6 1507.2 1202.1 1175.8 988.17 1431.7 1095.4 1893.8 TRUE FALSE 1420.415522 1509.598583 1267.524809 1410.534938 1365.846372 1384.311621 1175.670099 1310.068149 1200.618064 1507.84252 0.942018482 1.001164619 0.840621479 0.935465686 0.905828263 0.918074402 0.779703505 0.868836189 0.796248977 1 10.55827005 -7.566530335 24.57951445 0.850069844 0.923822527 0.168034156 0.066613811 173.1373017 97489.26173 0.024169491 0.018721623 2.71E-08 7.566530335 0.073752683 STS(ph)TPNVHMVSTTLPVDSR ddPTM_K562_Paclitaxel_30min_R1 3 STSTPNVHMVSTTLPVDSR 19 0 H7C155;P04049;P04049-2 H7C155 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 S(0.104)T(0.104)S(0.753)T(0.037)PNVHMVSTTLPVDSR;S(0.018)T(0.018)S(0.938)T(0.025)PNVHMVS(0.001)TTLPVDSR;S(0.019)T(0.019)S(0.763)T(0.2)PNVHMVSTTLPVDSR 166.3 1.62E-12 399262000 3996.43 3664.57 4729.2 4410.5 3072.54 3673.74 3416.3 4239.94 4060.32 4494.01 TRUE FALSE 4052.39235 4064.680145 3535.25497 4127.630271 3491.071967 4325.226207 4064.525091 3879.730632 4450.331878 3578.128295 1.132545291 1.135979431 0.988017946 1.153572463 0.975669869 1.208795731 1.135936097 1.084290532 1.243759729 1 11.8049894 -7.284700627 24.97173211 1.139910792 1.079718018 0.104791433 0.082981718 1789.457369 1921035.264 0.027652384 0.024401053 5.19E-08 7.284700627 -0.060192774 STS(ph)YGYSR ddPTM_K562_Paclitaxel_30min_R1 1 STSYGYSR 8 0 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 1 ST(0.003)S(0.997)YGYSR 134.23 0.00010791 27136000 3169.3 2830.6 3704.2 3769.6 2903.8 2602.9 3154 3509.2 2823.4 3601.7 TRUE FALSE 3213.679978 3139.65448 2769.028897 3527.834728 3299.346722 3064.487768 3752.455035 3211.071556 3094.600185 2867.671563 1.120658314 1.094844515 0.965601826 1.230208778 1.15053159 1.068632757 1.308537241 1.119748718 1.079133407 1 11.48566408 -6.267632165 24.97124513 1.146576153 1.063815849 0.12590582 0.08939199 936.8321871 3777596.752 0.024640397 0.037554207 5.40E-07 6.267632165 -0.082760304 STSAPQMS(ph)PGSSDNQSS(ph)SPQPAQQK ddPTM_K562_Paclitaxel_30min_R1 1 STSAPQMSPGSSDNQSSSPQPAQQK 25 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 2 STS(0.001)APQMS(0.713)PGS(0.125)S(0.16)DNQS(0.122)S(0.542)S(0.337)PQPAQQK 103.92 6.78E-06 15357000 5516.4 4936.3 9288.5 6143 5024.8 3957.2 4080.7 6054.4 5501.2 6487.3 TRUE FALSE 5593.64662 5475.261927 6943.503296 5749.015475 5709.262831 4658.953858 4854.991522 5540.04093 6029.61484 5165.184699 1.082951907 1.060032167 1.34428945 1.113031926 1.105335658 0.901991725 0.939945385 1.072573635 1.167357063 1 12.33460422 -7.030704985 5.875227836 1.014396843 1.152541652 0.293956561 0.098480361 0.254673222 27.00255596 0.03442019 0.035671623 9.32E-08 7.030704985 0.138144809 STSAPQMS(ph)PGSSDNQSSS(ph)PQPAQQK ddPTM_K562_Paclitaxel_30min_R1 3 STSAPQMSPGSSDNQSSSPQPAQQK 25 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 2 STSAPQMS(0.985)PGS(0.012)S(0.003)DNQS(0.001)S(0.313)S(0.686)PQPAQQK;ST(0.001)S(0.002)APQMS(0.525)PGS(0.257)S(0.215)DNQSS(0.329)S(0.671)PQPAQQK;STSAPQMS(0.978)PGS(0.006)S(0.009)DNQS(0.101)S(0.293)S(0.613)PQPAQQK 159.96 1.02E-25 117753000 17336.89 14946.98 29059.4 19391.62 15341.27 13394.54 13386.81 17764.16 17657.7 22473.4 TRUE FALSE 17579.65995 16578.94182 21722.99507 18147.92829 17431.0107 15769.8736 15926.88731 16254.98373 19353.80098 17893.30874 0.982471168 0.926544222 1.214028963 1.014229875 0.974163636 0.881327977 0.890102973 0.908439236 1.081622257 1 14.12713257 -6.800352075 3.626928223 0.942055997 1.040845705 0.157636011 0.088019603 0.385083309 10.53710006 0.028851069 0.034703074 1.58E-07 6.800352075 0.098789708 STSAPQMS(ph)PGSSDNQSSSPQPAQQK ddPTM_K562_Paclitaxel_30min_R1 4 STSAPQMSPGSSDNQSSSPQPAQQK 25 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 STSAPQMS(0.958)PGS(0.04)S(0.001)DNQSSSPQPAQQK;S(0.001)TS(0.001)APQMS(0.942)PGS(0.054)S(0.003)DNQSSSPQPAQQK;S(0.003)T(0.001)S(0.003)APQMS(0.616)PGS(0.351)S(0.026)DNQSSSPQPAQQK;STS(0.001)APQMS(0.583)PGS(0.34)S(0.073)DNQS(0.001)S(0.001)SPQPAQQK 202.87 1.00E-34 328746000 20921.9 17397.9 34427.2 21493.2 17757.2 15459.1 14986.8 21622.6 20036.1 26309.1 TRUE FALSE 21214.87115 19297.46156 25735.62757 20114.72235 20176.03127 18200.55433 17830.46706 19785.62517 21960.65693 20947.29098 1.012773975 0.921239008 1.228589778 0.960254115 0.963180933 0.868873896 0.851206348 0.944543387 1.048376945 1 14.35447606 -6.499274561 24.90451654 0.9371183 1.049824265 0.227806009 0.088864588 1058.333647 1116636.538 0.025612816 0.037724499 3.17E-07 6.499274561 0.112705965 STSAPQMSPGS(ph)SDNQSSSPQPAQQK ddPTM_K562_Paclitaxel_30min_R1 3 STSAPQMSPGSSDNQSSSPQPAQQK 25 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 STSAPQMS(0.092)PGS(0.454)S(0.454)DNQSSSPQPAQQK;STSAPQMS(0.025)PGS(0.487)S(0.487)DNQSSSPQPAQQK;STSAPQMS(0.007)PGS(0.497)S(0.497)DNQSSSPQPAQQK 147.35 1.08E-24 52278000 21963 18462.4 36185.3 23635.6 17468.2 16504 14427.5 22777.3 20740 26133.7 TRUE FALSE 22270.54976 20478.18727 27049.87348 22119.71841 19847.66458 19430.75267 17165.04281 20842.22619 22732.16967 20807.63759 1.0703065 0.984166856 1.299997338 1.063057654 0.953864392 0.933827907 0.824939531 1.001662303 1.092491618 1 14.34482556 -6.649532232 4.562489249 0.959312014 1.115613668 0.329525535 0.096831923 0.251736191 8.907135726 0.03042248 0.039547458 2.24E-07 6.649532232 0.156301654 STSAPQMSPGSSDNQSS(ph)SPQPAQQK ddPTM_K562_Paclitaxel_30min_R1 1 STSAPQMSPGSSDNQSSSPQPAQQK 25 0 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 STSAPQMSPGSSDNQSS(0.5)S(0.5)PQPAQQK 155.42 2.56E-24 4424900 2865.6 2445.3 5384.5 3242.6 2558 2452.9 2027.3 3305.7 2905 4228.4 TRUE FALSE 2905.727241 2712.286123 4025.11638 3034.634149 2906.442907 2887.887375 2411.969592 3024.860151 3184.03823 3366.649759 0.863091634 0.805633588 1.195585127 0.901381007 0.863304209 0.857792637 0.716430209 0.898477825 0.945758679 1 11.71709793 -6.51396998 24.84375082 0.867394371 0.95796088 0.068862119 0.11673027 937.9160436 2615556.036 0.03472351 0.04732935 3.06E-07 6.51396998 0.090566509 STSSHGTDEMESS(ph)SYRDRSPHR ddPTM_K562_Paclitaxel_30min_R1 2 STSSHGTDEMESSSYRDRSPHR 22 2 Q5JRC6;A0A0D9SGE8;Q8IWS0-2;Q8IWS0-4;Q8IWS0-3;Q8IWS0-5;Q8IWS0 Q5JRC6;Q8IWS0-5 PHF6 PHD finger protein 6 1 STSSHGTDEMES(0.023)S(0.418)S(0.418)Y(0.063)RDRS(0.078)PHR;STSSHGTDEMES(0.281)S(0.343)S(0.343)Y(0.015)RDRS(0.018)PHR 82.865 0.0004343 357300000 6447.3 6022.2 7245.2 6858.3 5527.7 5573.3 5064 6406.6 7482.6 6653.9 TRUE FALSE 6537.582092 6679.724162 5416.059653 6418.439335 6280.666325 6561.646502 6024.867564 5862.319341 8201.337163 5297.831528 1.234010945 1.260841181 1.022316324 1.211521979 1.185516431 1.238553259 1.137232759 1.106550729 1.548055487 1 12.37118625 STSSHGTDEMESSS(ph)YRDRSPHR ddPTM_K562_Paclitaxel_30min_R1 1 STSSHGTDEMESSSYRDRSPHR 22 2 Q5JRC6;A0A0D9SGE8;Q8IWS0-2;Q8IWS0-4;Q8IWS0-3;Q8IWS0-5;Q8IWS0 Q5JRC6;Q8IWS0-5 PHF6 PHD finger protein 6 1 STSSHGT(0.001)DEMES(0.304)S(0.107)S(0.356)Y(0.107)RDRS(0.124)PHR 45.82 0.024232 19630000 846.97 1016.3 1087 795.65 757.5 873.77 914.24 967.09 1081.3 831.08 TRUE FALSE 858.8301931 1127.263071 812.5734062 744.6205702 860.6843246 1028.720841 1087.712267 884.9296681 1185.163696 661.7054398 1.297904085 1.703572319 1.227998679 1.125305197 1.300706134 1.554650724 1.643801308 1.337346824 1.791074434 1 9.37004533 -7.256351295 24.3761845 1.497610502 1.334629741 0.064464639 0.240385575 766.5220529 3672288.167 0.079065371 0.076727834 5.54E-08 7.256351295 -0.16298076 STSSHGTDEMESSSYRDRS(ph)PHR ddPTM_K562_Paclitaxel_30min_R1 1 STSSHGTDEMESSSYRDRSPHR 22 2 Q5JRC6;A0A0D9SGE8;Q8IWS0-2;Q8IWS0-4;Q8IWS0-3;Q8IWS0-5;Q8IWS0 Q5JRC6;Q8IWS0-5 PHF6 PHD finger protein 6 1 STSSHGTDEMES(0.002)S(0.007)S(0.021)Y(0.055)RDRS(0.915)PHR 57.41 0.0079991 11834000 375.7 477.97 579.55 601.86 740.47 423.42 518.93 522.73 637.13 602.02 TRUE FALSE 380.9609591 530.156381 433.2354347 563.2593934 841.3345503 498.5075919 617.3942585 478.3208237 698.3291833 479.3279935 0.794781369 1.106040933 0.903839209 1.175102229 1.755237669 1.040013516 1.288041314 0.997898788 1.456892134 1 8.904869388 -6.376198957 5.14052545 1.264006211 0.954073794 0.280021484 0.228719973 0.298921625 11.46836917 0.063865966 0.095925688 4.21E-07 6.376198957 -0.309932417 STST(ph)PNVHMVSTTLPVDSR ddPTM_K562_Paclitaxel_30min_R1 1 STSTPNVHMVSTTLPVDSR 19 0 H7C155;P04049;P04049-2 H7C155 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 S(0.001)T(0.001)S(0.287)T(0.71)PNVHMVSTTLPVDSR 205.15 1.38E-22 130840000 1214.7 1192 1669.1 1420.3 1172.3 1009.6 1398.1 1126.8 1096.1 1539.6 TRUE FALSE 1231.709548 1322.146591 1247.715062 1329.208315 1331.987107 1188.638385 1663.382176 1031.071307 1201.385303 1225.828675 1.004797467 1.078573718 1.01785436 1.084334493 1.086601362 0.969661103 1.356945069 0.84112187 0.980059716 1 10.25954164 STSTPTS(ph)PGPR ddPTM_K562_Paclitaxel_30min_R1 4 STSTPTSPGPR 11 0 H3BUF6;H3BRB0;A0A0C4DGL7;Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 H3BUF6;Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 STST(0.002)PT(0.001)S(0.997)PGPR;STSTPT(0.006)S(0.993)PGPR;STSTPTS(0.999)PGPR;STSTPTS(1)PGPR 144.7 0.00038628 211614000 21275.5 20231.2 27389.4 24178.1 21932.6 23377.5 21057 22982.7 19712.6 26575.3 TRUE FALSE 21573.42264 22440.11083 20474.60722 22627.42488 24920.19144 27523.17139 25052.45583 21030.17618 21606.08331 21159.23927 1.019574587 1.060534859 0.967643825 1.069387448 1.177745151 1.300763748 1.183996055 0.993900391 1.021118152 1 14.36900014 -6.528376402 10.14007714 1.125423239 1.020037127 0.173949974 0.092307649 0.252794349 363.2586965 0.029950524 0.039733212 2.96E-07 6.528376402 -0.105386113 STSYGYS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 STSYGYSR 8 0 Q13242 Q13242 SRSF9 Serine/arginine-rich splicing factor 9 1 STSYGYS(1)R 101.97 0.013674 29083000 2034.6 1627.8 2415.3 2350.7 2043.3 1614.5 1914.4 1974.8 1378.4 2289.6 TRUE FALSE 2063.090677 1805.528709 1805.527643 2199.936623 2321.632053 1900.808906 2277.647406 1807.028414 1510.801479 1822.978263 1.131714359 0.990427996 0.990427412 1.206781599 1.273537979 1.042694224 1.249410074 0.991250664 0.828754522 1 10.83208164 -8.512246828 20.74169424 0.9129186 1.121411198 0.429118561 0.101043063 51.71254557 100897.3359 0.063274234 0.027273992 3.07E-09 8.512246828 0.208492598 STT(ph)PPPAEPVSLPQEPPKPR ddPTM_K562_Paclitaxel_30min_R1 3 STTPPPAEPVSLPQEPPKPR 20 1 Q9UN86-2 Q9UN86-2 1 S(0.155)T(0.155)T(0.69)PPPAEPVSLPQEPPKPR;S(0.16)T(0.16)T(0.68)PPPAEPVSLPQEPPKPR;S(0.258)T(0.258)T(0.484)PPPAEPVSLPQEPPKPR 171.9 2.04E-13 802400000 8870.8 6944.8 15621.9 10488.2 7472 6624.4 6730.3 10087.2 5916.5 12482 TRUE FALSE 8995.018569 7703.05675 11677.95814 9815.533795 8489.812902 7799.144329 8007.33929 9230.229398 6484.806261 9938.161548 0.905098848 0.775098766 1.175062216 0.987660922 0.854263926 0.784767312 0.805716354 0.928766287 0.652515682 1 13.27876328 -6.851955935 5.246454202 0.827609673 0.962389229 0.187227795 0.125436523 0.346100134 15.53462515 0.039362002 0.045199072 1.41E-07 6.851955935 0.134779555 STT(ph)PTSSPFR ddPTM_K562_Paclitaxel_30min_R1 3 STTPTSSPFR 10 0 E7EPN9;Q9Y520-2;Q9Y520-6;Q9Y520-4;Q9Y520-5;Q9Y520;Q9Y520-7;A0A2R8Y424;A0A2R8Y7F4;A0A2R8YET2;H7C5N8 E7EPN9 PRRC2C Protein PRRC2C 1 S(0.001)T(0.022)T(0.974)PT(0.001)S(0.001)SPFR;STT(0.974)PT(0.007)S(0.015)S(0.004)PFR;S(0.003)T(0.087)T(0.885)PT(0.006)S(0.015)S(0.004)PFR 120.63 0.0064829 315038000 10427.5 10205.5 12756.7 10471.5 9801.9 10202.1 9718.2 12508.6 9619.4 13839.2 TRUE FALSE 10573.51717 11319.771 9536.113312 9799.904859 11137.08473 12011.29919 11562.17772 11445.91635 10543.38635 11018.76344 0.959591993 1.027317726 0.865443147 0.88938336 1.010738164 1.090076872 1.049317174 1.038765957 0.956857492 1 13.42767471 -6.914990106 6.692129555 1.032901778 0.937507754 0.416730195 0.051504621 0.220747331 14.32820805 0.017092111 0.019425183 1.22E-07 6.914990106 -0.095394023 STT(ph)SQVTPAEEKDGHSPMSK ddPTM_K562_Paclitaxel_30min_R1 2 STTSQVTPAEEKDGHSPMSK 20 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 S(0.029)T(0.15)T(0.813)S(0.008)QVTPAEEKDGHSPMSK;S(0.085)T(0.085)T(0.415)S(0.415)QVTPAEEKDGHSPMSK 97.214 0.0010505 40701000 3573.2 2676.7 9462.9 4431.3 2690.5 2829.9 3049.2 5582.2 5625.4 7046.1 TRUE FALSE 3623.235824 2968.951158 7073.873859 4147.096252 3056.991651 3331.743031 3627.769782 5107.957267 6165.744805 5610.100952 0.645841466 0.529215282 1.260917392 0.739219541 0.544908492 0.593882901 0.646649644 0.910492932 1.099043468 1 12.45381102 -8.474900663 3.921400797 1.043271161 0.71451237 0.330710844 0.198015465 0.286184516 9.059155491 0.138417743 0.056225599 3.35E-09 8.474900663 -0.328758791 STTSQVTPAEEKDGHS(ph)PMSK ddPTM_K562_Paclitaxel_30min_R1 4 STTSQVTPAEEKDGHSPMSK 20 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 STTSQVTPAEEKDGHS(0.943)PMS(0.057)K;STTSQVT(0.003)PAEEKDGHS(0.945)PMS(0.052)K;STTSQVTPAEEKDGHS(0.887)PMS(0.113)K;STTSQVTPAEEKDGHS(0.862)PMS(0.138)K 62.916 0.015041 167818000 15153.5 10361.6 34013.1 16017.6 11752.9 8888.6 8715.6 15980.2 14298.5 22160.2 TRUE FALSE 15365.69575 11492.91453 25426.07224 14990.30283 13353.84396 10464.86841 10369.3396 14622.58226 15671.93481 17643.93908 0.870876718 0.651380311 1.44106552 0.849600691 0.756851625 0.593114064 0.587699808 0.828759508 0.888233333 1 14.10688506 -6.516708368 24.74413845 0.75363635 0.986001152 0.156088675 0.216812335 417.6360247 1674786.892 0.064610656 0.086454981 3.04E-07 6.516708368 0.232364802 STTTGHLIYK ddPTM_K562_Paclitaxel_30min_R1 2 STTTGHLIYK 10 0 A0A087WVQ9;Q5VTE0;P68104;A6PW80;Q5JR01;A0A087WV01;A0A2R8YDN5;A0A2R8Y660;A0A2R8Y488;A0A2U3TZH3;Q05639 A0A087WVQ9 EEF1A1;EEF1A1P5;EEF1A2 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha;Elongation factor 1-alpha 2 0 ; 111.06 0.010437 82668000 23641.5 20635.7 35721 25164.8 20234 18949.4 17524 24645.2 22155.5 28981 FALSE TRUE 23972.55394 22888.77551 26702.79176 23550.84236 22990.21336 22309.81003 20849.08752 22551.43643 24283.63477 23074.65629 1.03891272 0.991944375 1.157234648 1.020636757 0.996340447 0.966853406 0.903549212 0.977324912 1.052394214 1 14.49402154 -6.687468815 3.234866751 0.975741934 1.059308233 0.313862748 0.05192495 0.292062719 6.134978541 0.016759691 0.021758244 2.05E-07 6.687468815 0.0835663 STVCS(ph)WKSR ddPTM_K562_Paclitaxel_30min_R1 1 STVCSWKSR 9 1 H0Y8I0 H0Y8I0 RUFY3 1 STVCS(0.995)WKS(0.005)R 97.813 0.0070894 1976700 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 STVEEDNDS(ph)GGFDALDLDDDSHER ddPTM_K562_Paclitaxel_30min_R1 1 STVEEDNDSGGFDALDLDDDSHER 24 0 Q9BXL7;H7BY05 Q9BXL7 CARD11 Caspase recruitment domain-containing protein 11 1 STVEEDNDS(1)GGFDALDLDDDSHER 106.44 2.87E-06 15306000 1067.9 866.48 1323.8 920.11 1184.3 897.18 1026.9 1046.6 975.78 1097.4 TRUE FALSE 1082.853895 961.0852166 989.5903174 861.0982629 1345.62171 1056.282276 1221.748914 957.6847973 1069.508029 873.7492776 1.239318787 1.099955378 1.132579268 0.985521001 1.540054733 1.208907753 1.398283175 1.096063621 1.224044536 1 9.771075548 -4.870749154 18.33968255 1.198732701 10.76618555 0.00468511 0.163307512 2862.823688 407029.3968 0.039170027 2313.035839 1.35E-05 4.870749154 9.567452847 STVTDES(ph)EMQDMMT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 STVTDESEMQDMMTR 15 0 A0A0G2JS52;Q01538;Q01538-2 A0A0G2JS52 MYT1 Myelin transcription factor 1 2 STVTDES(1)EMQDMMT(1)R 50.305 0.028648 93589000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 STVTGERQS(ph)GDGQESTEPVENK ddPTM_K562_Paclitaxel_30min_R1 2 STVTGERQSGDGQESTEPVENK 22 1 O15234;J3KSY7 O15234 CASC3 Protein CASC3 1 S(0.007)T(0.007)VT(0.006)GERQS(0.898)GDGQES(0.068)T(0.014)EPVENK;STVT(0.004)GERQS(0.995)GDGQESTEPVENK 76.98 0.0014464 186182000 2942.5 2657.96 5382.9 3630.3 2586.17 2288.11 2320.13 3664.5 2729.6 4135.9 TRUE FALSE 2983.704078 2948.165061 4023.92032 3397.468807 2938.450138 2693.874182 2760.362556 3353.177852 2991.790276 3293.00131 0.906074367 0.89528208 1.221961348 1.031724098 0.892331907 0.818060465 0.838251278 1.018274072 0.908529938 1 11.68518737 -6.761089379 24.99986535 0.90504643 1.020169237 0.188659794 0.101738214 15.57634374 1112514.559 0.032822234 0.03977724 1.73E-07 6.761089379 0.115122806 STVTGERQS(ph)GDGQESTEPVENKVGK ddPTM_K562_Paclitaxel_30min_R1 1 STVTGERQSGDGQESTEPVENKVGK 25 2 O15234;J3KSY7 O15234 CASC3 Protein CASC3 1 S(0.029)T(0.029)VT(0.133)GERQS(0.798)GDGQES(0.003)T(0.008)EPVENKVGK 62.823 0.002522 30979000 1031.5 951.43 2144.2 1156.4 1080.8 679.79 663.05 1237.9 1984.7 1554.2 TRUE FALSE 1045.944182 1055.310345 1602.870191 1082.23368 1228.023258 800.3412118 788.8602761 1132.732668 2175.339303 1237.453187 0.845239395 0.852808297 1.295297639 0.87456535 0.992379567 0.646764839 0.637486965 0.915374157 1.757916442 1 10.27315823 -8.644804325 9.579419715 1.376780425 0.880497774 0.402189222 0.242424385 0.26845449 20.99118425 0.163721229 0.061565582 2.27E-09 8.644804325 -0.49628265 STVTGERQSGDGQES(ph)TEPVENKVGK ddPTM_K562_Paclitaxel_30min_R1 1 STVTGERQSGDGQESTEPVENKVGK 25 2 O15234;J3KSY7 O15234 CASC3 Protein CASC3 1 S(0.003)T(0.003)VT(0.028)GERQS(0.304)GDGQES(0.33)T(0.33)EPVENKVGK 46.35 0.022749 34816000 1167.8 790.78 2215.5 1151.7 778.47 775.58 805.74 1225.1 1895.6 1537.4 TRUE FALSE 1184.152803 877.1200346 1656.169624 1077.835117 884.5107936 913.1182233 958.6249588 1121.020108 2077.68085 1224.077036 0.967384215 0.716556237 1.352994603 0.880528827 0.722594059 0.745964671 0.783141036 0.915808462 1.697344847 1 10.25747864 -8.64318327 9.26580899 1.346407204 0.879634588 0.383209864 0.235272373 0.262511233 19.80948102 0.156498998 0.05879254 2.27E-09 8.64318327 -0.466772616 SVAAEGALLPQTPPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 SVAAEGALLPQTPPSPR 17 0 H7C2H2;Q86X27-3;Q86X27 H7C2H2 RALGPS2 Ras-specific guanine nucleotide-releasing factor RalGPS2 1 SVAAEGALLPQT(0.003)PPS(0.997)PR;SVAAEGALLPQT(0.002)PPS(0.998)PR 141.18 8.50E-09 31180000 2940.5 2846.4 3550.9 3536 2660.5 2657.3 2771.6 3227.8 3096.9 3881.6 TRUE FALSE 2981.676072 3157.179578 2654.431378 3309.216787 3022.905143 3128.534845 3297.496631 2953.578243 3394.371082 3090.527789 0.964778923 1.021566474 0.858892577 1.070761052 0.978119386 1.012297917 1.066968769 0.955687327 1.09831437 1 11.59363752 -6.293764757 24.99668276 1.023313322 0.955727932 0.287264842 0.05554871 869.6590591 672490.8107 0.014795615 0.021947345 5.08E-07 6.293764757 -0.06758539 SVAEQHTPVCSRFS(ph)PPEPGDTPTDEPDALYVACQGQPK ddPTM_K562_Paclitaxel_30min_R1 1 SVAEQHTPVCSRFSPPEPGDTPTDEPDALYVACQGQPK 38 1 O14686;O14686-3 O14686 KMT2D Histone-lysine N-methyltransferase 2D 1 S(0.001)VAEQHT(0.02)PVCS(0.186)RFS(0.685)PPEPGDT(0.053)PT(0.053)DEPDALY(0.001)VACQGQPK 66.124 4.16E-06 27549000 1131.2 709.2 1628.5 1298.1 713.11 913.38 814.27 975.72 1011.4 1455.9 TRUE FALSE 1147.04029 786.6328544 1217.365034 1214.845676 810.2476551 1075.355119 968.7734817 892.8264957 1108.549489 1159.186781 0.989521541 0.678607509 1.050188851 1.048015468 0.698979378 0.927680626 0.835735446 0.770217976 0.956316538 1 10.17889733 -4.922578989 21.07724617 0.879299171 5.71350315 0.053878781 0.129266578 2169.546132 592988.2757 0.030521751 1975.118755 1.20E-05 4.922578989 4.834203979 SVANSGLSDSLTTSTPRPS(ph)NGDSPSHPYHR ddPTM_K562_Paclitaxel_30min_R1 1 SVANSGLSDSLTTSTPRPSNGDSPSHPYHR 30 1 A0A1W2PPM8;A0A1W2PPJ9;A0A1W2PQF1;Q7RTN6-2;Q7RTN6-5;Q7RTN6-3;Q7RTN6 A0A1W2PPM8 STRADA STE20-related kinase adapter protein alpha 1 SVANSGLSDSLT(0.003)T(0.107)S(0.107)T(0.144)PRPS(0.466)NGDS(0.107)PS(0.05)HPY(0.016)HR 78.978 1.79E-05 10254000 591.82 696.86 775.52 731.84 610.51 700.03 629.01 960.61 648.15 953.72 TRUE FALSE 600.1073059 772.9455314 579.7303845 684.903058 693.671798 824.1704916 748.3613638 879.0001846 710.4077035 759.3513405 0.790289388 1.017902373 0.763454746 0.901958055 0.913505727 1.085361212 0.985527152 1.157567173 0.935545466 1 9.568623743 -7.107939726 3.884299189 1.039387751 0.874338503 0.458273945 0.085096779 0.209863886 5.606633851 0.027158287 0.02753745 7.80E-08 7.107939726 -0.165049249 SVARLECS(ph)GAISAR ddPTM_K562_Paclitaxel_30min_R1 1 SVARLECSGAISAR 14 1 Q5T5D8 Q5T5D8 ZNF684 1 SVARLECS(0.71)GAIS(0.29)AR 109.07 0.010439 17486000 1096.1 1081.6 938.04 1625.9 1288.5 1183.2 867.36 1096.7 989.53 1027.2 TRUE FALSE 1111.448782 1199.692746 701.2202005 1521.622051 1464.015514 1393.023907 1031.937032 1003.52849 1084.578778 817.8560762 1.358978449 1.466875139 0.857388263 1.860501005 1.790064973 1.703262894 1.261758715 1.227023334 1.326124253 1 9.675703174 -8.662657673 1.113191826 1.055062344 1.488238652 0.214510585 0.275896193 0.805891623 1.954849176 0.27754424 0.094334986 2.17E-09 8.662657673 0.433176308 SVAVS(ph)DEEEVEEEAER ddPTM_K562_Paclitaxel_30min_R1 3 SVAVSDEEEVEEEAER 16 0 Q9Y6X9-2;Q9Y6X9 Q9Y6X9-2 MORC2 MORC family CW-type zinc finger protein 2 1 S(0.001)VAVS(0.999)DEEEVEEEAER;S(0.001)VAVS(0.999)DEEEVEEEAER;SVAVS(1)DEEEVEEEAER 167.18 1.49E-08 99200000 2966.08 2697.86 3902.64 3003.51 2856.76 3051.35 2477.37 3422.51 2720.69 3389.05 TRUE FALSE 3007.614271 2992.421478 2917.370265 2810.878312 3245.899077 3592.464079 2947.438025 3131.746413 2982.024431 2698.35975 1.114608336 1.108977955 1.081164313 1.041698874 1.202915615 1.331351048 1.09230729 1.16061115 1.105124856 1 11.39786699 -6.764339672 24.9997901 1.163059967 1.087820765 0.105183328 0.082585762 147.5130178 1271526.806 0.025546911 0.030233942 1.72E-07 6.764339672 -0.075239201 SVAVS(ph)DEEEVEEEAERR ddPTM_K562_Paclitaxel_30min_R1 1 SVAVSDEEEVEEEAERR 17 1 Q9Y6X9-2;Q9Y6X9 Q9Y6X9-2 MORC2 MORC family CW-type zinc finger protein 2 1 S(0.004)VAVS(0.996)DEEEVEEEAERR 100.97 0.001289 11470000 696.66 486.06 652.02 540.39 407.18 496.85 347.53 440.25 517.88 647.52 TRUE FALSE 706.4153894 539.1296745 487.4094869 505.7318041 462.6448096 584.9593714 413.4720033 402.8480145 567.6246879 515.5550686 1.370203558 1.04572665 0.945407225 0.980946236 0.897372246 1.134620542 0.801993867 0.781386973 1.100997202 1 9.009982726 -5.226834905 2.129382147 0.946459796 1.51061352 0.574412577 0.106796606 0.535195711 2.529250338 0.028291768 0.596380303 5.93E-06 5.226834905 0.564153724 SVAVS(ph)DEEEVEEEAERRK ddPTM_K562_Paclitaxel_30min_R1 1 SVAVSDEEEVEEEAERRK 18 2 Q9Y6X9-2;Q9Y6X9 Q9Y6X9-2 MORC2 MORC family CW-type zinc finger protein 2 1 S(0.083)VAVS(0.917)DEEEVEEEAERRK 69.612 0.012236 26795000 1227.3 1093.4 2457.1 1517.7 1118.7 1525 989.38 1351.6 2189.6 1479.8 TRUE FALSE 1244.485987 1212.78111 1836.774716 1420.361515 1271.08588 1795.437338 1177.10969 1236.773144 2399.920863 1178.215948 1.056246089 1.029336865 1.558945726 1.205518834 1.078822505 1.523861005 0.999061074 1.049699884 2.036910863 1 10.20238827 SVDALDDLT(ph)PPSTAESGSRS(ph)PTSNGGR ddPTM_K562_Paclitaxel_30min_R1 2 SVDALDDLTPPSTAESGSRSPTSNGGR 27 1 S4R3V8;Q86X29-6;Q86X29-5;Q86X29-2;Q86X29-3;Q86X29-4;Q86X29 S4R3V8 LSR Lipolysis-stimulated lipoprotein receptor 2 SVDALDDLT(0.897)PPS(0.028)T(0.013)AES(0.088)GS(0.125)RS(0.652)PT(0.148)S(0.049)NGGR;SVDALDDLT(0.646)PPS(0.083)T(0.099)AES(0.144)GS(0.051)RS(0.678)PT(0.223)S(0.076)NGGR 93.207 7.29E-06 49212000 5564.3 5313.8 7255.3 6188.3 5741.7 5296.4 5353.1 6516 6248.1 6836.5 TRUE FALSE 5642.217367 5893.978654 5423.609783 5791.410136 6523.816748 6235.642175 6368.82278 5962.425128 6848.257922 5443.217547 1.036559226 1.082811518 0.996397762 1.063968156 1.198522141 1.145580187 1.170047444 1.095386153 1.258126809 1 12.41024398 -6.626770152 6.177935609 1.15033112 1.041067962 0.354536121 0.066174368 0.211788935 10.95294838 0.018237553 0.023615034 2.36E-07 6.626770152 -0.109263159 SVDALDDLTPPST(ph)AESGSRS(ph)PTSNGGR ddPTM_K562_Paclitaxel_30min_R1 1 SVDALDDLTPPSTAESGSRSPTSNGGR 27 1 S4R3V8;Q86X29-6;Q86X29-5;Q86X29-2;Q86X29-3;Q86X29-4;Q86X29 S4R3V8 LSR Lipolysis-stimulated lipoprotein receptor 2 SVDALDDLT(0.063)PPS(0.408)T(0.476)AES(0.047)GS(0.068)RS(0.742)PT(0.148)S(0.047)NGGR 83.601 1.97E-05 32672000 1057.8 1274.9 1183.9 1018.1 1058.7 1187.8 832.33 1226.7 1094.4 1350.1 TRUE FALSE 1072.612464 1414.097893 885.0098027 952.8036228 1202.912864 1398.439652 990.2602724 1122.484178 1199.52201 1074.948879 0.997826487 1.315502459 0.823304085 0.886371102 1.119041926 1.300935961 0.921216154 1.044220986 1.115887493 1 10.07005234 -4.968792429 19.08127188 1.058466417 0.758922108 0.013660563 0.154661756 14820.10569 113370.3948 0.038118102 157507.6196 1.07E-05 4.968792429 -0.299544309 SVDALDDLTPPSTAESGSRS(ph)PTSNGGR ddPTM_K562_Paclitaxel_30min_R1 4 SVDALDDLTPPSTAESGSRSPTSNGGR 27 1 S4R3V8;Q86X29-6;Q86X29-5;Q86X29-2;Q86X29-3;Q86X29-4;Q86X29 S4R3V8 LSR Lipolysis-stimulated lipoprotein receptor 1 SVDALDDLTPPS(0.001)T(0.005)AES(0.196)GS(0.196)RS(0.54)PT(0.045)S(0.017)NGGR;SVDALDDLTPPS(0.052)T(0.052)AES(0.156)GS(0.156)RS(0.36)PT(0.156)S(0.069)NGGR;SVDALDDLTPPS(0.002)T(0.002)AES(0.032)GS(0.155)RS(0.614)PT(0.155)S(0.04)NGGR;SVDALDDLTPPSTAES(0.171)GS(0.171)RS(0.64)PT(0.014)S(0.004)NGGR 153.14 3.89E-32 1157818000 4926.93 4399.52 5401.65 5083.33 4709.68 4779.47 4588.89 5345.53 5418.42 5914.16 TRUE FALSE 4995.922221 4879.874472 4037.936651 4757.307966 5351.218152 5627.041897 5459.607922 4891.393861 5938.883451 4708.850946 1.060964188 1.036319588 0.857520592 1.010290625 1.136416976 1.194992571 1.159435282 1.038765915 1.261217125 1 12.20115934 -6.721155789 4.813611253 1.138803847 0.98222465 0.394542799 0.085269274 0.190585762 9.977814597 0.02541624 0.032192923 1.90E-07 6.721155789 -0.156579198 SVEDEMDS(ph)PGEEPFYTGQGR ddPTM_K562_Paclitaxel_30min_R1 2 SVEDEMDSPGEEPFYTGQGR 20 0 A0A590UJA3;S4R3W2;A0A590UJU2;A0A590UK38;A0A590UK73;B1AKN7;B1AKN5;A0A590UK09;B1AKN8;Q12857-2;Q12857-3;Q12857;Q12857-4 A0A590UJA3 NFIA Nuclear factor 1;Nuclear factor 1 A-type 1 S(0.005)VEDEMDS(0.995)PGEEPFYTGQGR;SVEDEMDS(1)PGEEPFYTGQGR 224.15 4.56E-190 12811000 1429.98 1329.17 1677.87 1359.12 1178.72 996.22 1119.88 1801.63 1237.6 1935.8 TRUE FALSE 1450.004132 1474.293276 1254.270967 1271.952126 1339.28162 1172.885629 1332.371384 1648.570286 1356.47701 1541.282897 0.94077741 0.956536453 0.813783744 0.82525546 0.868939519 0.76098011 0.864456088 1.069609148 0.880096063 1 10.58991597 -8.157718003 9.014778307 0.980913842 0.858015128 0.394961842 0.06894285 0.359675567 28.51718092 0.033365831 0.019238141 6.95E-09 8.157718003 -0.122898714 SVEST(ph)SPEPSK ddPTM_K562_Paclitaxel_30min_R1 1 SVESTSPEPSK 11 0 P18583-6;P18583-2;P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-8 P18583-6 SON Protein SON 1 SVEST(0.5)S(0.5)PEPSK 207.34 1.07E-08 95630000 8226.5 6967.6 13304 8266.5 6763.1 5721.3 6066 8751.7 5819.9 9604.6 TRUE FALSE 8341.696381 7728.346131 9945.240658 7736.323689 7684.34872 6735.892224 7216.991833 8008.188459 6378.927399 7647.177248 1.090820326 1.010614228 1.300511331 1.011657431 1.00486081 0.880833804 0.943745855 1.047208427 0.834154511 1 12.9007116 -6.505007765 17.55586163 0.955485683 1.127385766 0.458301357 0.088436166 14.38041977 14125.70489 0.024782495 0.035575768 3.13E-07 6.505007765 0.171900083 SVESTS(ph)PEPSK ddPTM_K562_Paclitaxel_30min_R1 1 SVESTSPEPSK 11 0 P18583-6;P18583-2;P18583-10;P18583-3;P18583-4;P18583-7;P18583;P18583-5;P18583-9;P18583-8 P18583-6 SON Protein SON 1 SVEST(0.055)S(0.944)PEPSK 117.27 0.0037543 99692000 5502.3 4180.1 9338.3 6364.3 4454.7 3642.5 3826.9 5281.4 3576.1 6882.1 TRUE FALSE 5579.349176 4636.497454 6980.73067 5956.122284 5061.505559 4288.446232 4553.034297 4832.712105 3919.600383 5479.524242 1.01821781 0.846149638 1.273966564 1.086977997 0.923712595 0.782631127 0.830917813 0.88195834 0.715317646 1 12.41983492 -6.947010951 4.080341767 0.8350345 1.055554465 0.418606346 0.11868474 0.215111261 7.492780131 0.038840409 0.043642567 1.13E-07 6.947010951 0.220519965 SVFDVLDGEEMRR ddPTM_K562_Paclitaxel_30min_R1 1 SVFDVLDGEEMRR 13 1 Q8N1G2 Q8N1G2 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 0 122.46 4.48E-07 0 1630.2 1696.4 2245.3 2131 1506 1697.5 1650.4 2123.1 1908.9 2480.5 FALSE TRUE 1653.02783 1881.618689 1678.446245 1994.327198 1711.142697 1998.527791 1963.554784 1942.729403 2092.258374 1974.972738 0.836987669 0.952731474 0.849857931 1.009799862 0.866413325 1.011926773 0.994218678 0.983674035 1.059385952 1 10.94761702 -6.83808851 0.511918706 1.026075955 0.863396009 0.499206505 0.052164964 1.014766822 0.53417304 0.040723685 0.081212587 1.45E-07 6.83808851 -0.162679946 SVFEPEDSS(ph)IVDNELWSEMRR ddPTM_K562_Paclitaxel_30min_R1 1 SVFEPEDSSIVDNELWSEMRR 21 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 S(0.001)VFEPEDS(0.25)S(0.749)IVDNELWSEMRR 63.522 0.016385 0 386.7 336.21 486.47 368.65 249.1 332.11 321.52 465.35 659.43 684.74 TRUE FALSE 392.1149931 372.9185448 363.6546319 345.006439 283.0316373 391.0050454 382.5267416 425.8156129 722.7711979 545.1896121 0.719226824 0.684016233 0.66702414 0.632819172 0.519143489 0.717190931 0.70163982 0.781041317 1.325724449 1 9.090614264 -8.622352523 5.073326729 1.15609546 0.664467574 0.820073302 0.092097117 0.078530491 3.193791515 0.065627503 0.023259519 2.39E-09 8.622352523 -0.491627886 SVFWASS(ph)PYRR ddPTM_K562_Paclitaxel_30min_R1 1 SVFWASSPYRR 11 1 F1T0I1;O15027-2;O15027-4;O15027-3;O15027;O15027-5 F1T0I1 SEC16A Protein transport protein Sec16A 1 SVFWAS(0.098)S(0.898)PY(0.005)RR 98.898 0.020226 10142000 1802.8 1987.4 1858.7 1545.8 1603.9 1740.4 1355.6 2022.9 1759.4 2438.2 TRUE FALSE 1828.044762 2204.391053 1389.448197 1446.659307 1822.378334 2049.035504 1612.818023 1851.042018 1928.398231 1941.293502 0.941663257 1.135526931 0.715733193 0.745203806 0.938744364 1.05550011 0.830795561 0.953509615 0.993357382 1 10.92280254 -6.983562687 24.96040142 0.959891017 0.884349379 0.094046382 0.119475578 708.9791243 1076593.62 0.03986135 0.045186908 1.04E-07 6.983562687 -0.075541638 SVGGDS(ph)DTEDMR ddPTM_K562_Paclitaxel_30min_R1 1 SVGGDSDTEDMR 12 0 Q9UK61-2;Q9UK61-3;Q9UK61;A0A087X0F1;Q9UK61-4 Q9UK61-2 FAM208A Protein FAM208A 1 SVGGDS(0.975)DT(0.025)EDMR 88.338 0.020498 35716000 1587.4 1244.1 1736.6 1692.8 1461.7 1237.9 1335.3 1580.7 1222.9 1610 TRUE FALSE 1609.628498 1379.935045 1298.173852 1584.231385 1660.808287 1457.424184 1588.666204 1446.409669 1340.365009 1281.881116 1.255676893 1.076492217 1.012710021 1.235864516 1.295602428 1.136941769 1.239324134 1.128349307 1.045623492 1 10.32404675 -8.760407588 2.676000871 1.00501043 1.174198135 0.365294941 0.081816697 0.317941267 4.272747017 0.080962454 0.023044829 1.74E-09 8.760407588 0.169187705 SVIDLRPEDVVHES(ph)GSLGDR ddPTM_K562_Paclitaxel_30min_R1 3 SVIDLRPEDVVHESGSLGDR 20 1 Q96C24-2;Q96C24 Q96C24-2 SYTL4 Synaptotagmin-like protein 4 1 SVIDLRPEDVVHES(0.585)GS(0.415)LGDR;SVIDLRPEDVVHES(0.83)GS(0.17)LGDR;SVIDLRPEDVVHES(0.588)GS(0.412)LGDR 79.177 0.0033625 40710300 3222.84 2962.5 3803.6 3328.13 2600.66 3158.8 3220.79 3803.46 3056.31 4162.1 TRUE FALSE 3267.969703 3285.955769 2843.334138 3114.678638 2954.913922 3718.968828 3831.918089 3480.332333 3349.882231 3313.861735 0.986151495 0.991579019 0.858012302 0.939893963 0.891682924 1.122246227 1.156330105 1.050234624 1.010869644 1 11.69429769 -7.260358417 24.99994278 1.07660041 0.93285802 0.576302487 0.057409762 72.14894084 1668631.856 0.020509302 0.019417191 5.49E-08 7.260358417 -0.14374239 SVIDLRPEDVVHESGS(ph)LGDR ddPTM_K562_Paclitaxel_30min_R1 1 SVIDLRPEDVVHESGSLGDR 20 1 Q96C24-2;Q96C24 Q96C24-2 SYTL4 Synaptotagmin-like protein 4 1 SVIDLRPEDVVHES(0.043)GS(0.957)LGDR 89.721 0.00072386 19649000 895.74 1040 1122.1 1027.6 791.04 814.14 907.88 1095.7 905.94 1241.6 TRUE FALSE 908.2831236 1153.550717 838.811977 961.6943354 898.7930404 958.5162979 1080.145491 1002.613446 992.9595848 988.5612385 0.918792977 1.166898592 0.848517972 0.972822217 0.909193083 0.969607406 1.092643985 1.014214807 1.00444924 1 9.949186529 -7.571737014 24.42981805 1.029313788 0.965785619 0.128932937 0.080854748 199.7380014 99869.70998 0.030551019 0.023664725 2.68E-08 7.571737014 -0.06352817 SVLPPDGNGS(ph)PVLPDKR ddPTM_K562_Paclitaxel_30min_R1 4 SVLPPDGNGSPVLPDKR 17 1 Q8N6S5 Q8N6S5 ARL6IP6 ADP-ribosylation factor-like protein 6-interacting protein 6 1 SVLPPDGNGS(1)PVLPDKR;SVLPPDGNGS(1)PVLPDKR;SVLPPDGNGS(1)PVLPDKR;SVLPPDGNGS(1)PVLPDKR 162.26 1.80E-40 78388000 8382.6 7158.9 13885.9 9721.2 7122.6 6546.31 6701.08 9396.5 8667.6 10222.9 TRUE FALSE 8499.982263 7940.532912 10380.23281 9097.725742 8092.818707 7707.206164 7972.574948 8598.208674 9500.161708 8139.467369 1.044292197 0.975559278 1.275296323 1.117729862 0.994268831 0.946893183 0.979495904 1.056360114 1.167172405 1 12.99071867 -6.755220545 24.99081482 1.020766024 1.106392056 0.156378817 0.089792165 293.087935 1177788.321 0.028668036 0.03607144 1.76E-07 6.755220545 0.085626032 SVLVHAGSQGQSSALLHPS(ph)PT(ph)NQQASPVIHYS(ph)PTNQQLR ddPTM_K562_Paclitaxel_30min_R1 1 SVLVHAGSQGQSSALLHPSPTNQQASPVIHYSPTNQQLR 39 0 Q13469-3;Q13469-4;Q13469-2;Q13469;Q13469-5 Q13469-3 NFATC2 "Nuclear factor of activated T-cells, cytoplasmic 2" 3 SVLVHAGS(0.001)QGQS(0.009)S(0.008)ALLHPS(0.647)PT(0.643)NQQAS(0.585)PVIHY(0.406)S(0.472)PT(0.229)NQQLR 54.273 0.00024747 16591000 406.22 271.3 426.84 450.19 301.9 406.69 440.8 384.84 322.51 457.96 TRUE FALSE 411.9083333 300.9214515 319.0789629 421.3168284 343.0238912 478.8107613 524.4394989 352.1454399 353.4885265 364.6275006 1.129668861 0.825284574 0.875082001 1.155471893 0.940751563 1.313150436 1.438288385 0.965767638 0.969451086 1 8.510279565 -6.266237343 24.68676421 1.125275047 0.931539086 0.167780143 0.169524534 555.5294636 2858348.543 0.050204785 0.077246732 5.42E-07 6.266237343 -0.193735962 SVMLENY(ph)S(ph)NLVSLGYQHT(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 SVMLENYSNLVSLGYQHTK 19 0 K7EMS6;K7EIF0;A0A087WV54;K7EQP6;F5H848;E7EV44;A0A075B6T9;A0A088AWK7;Q14587-8;Q14587 K7EMS6 ZNF268 Zinc finger protein 268 3 S(0.131)VMLENY(0.929)S(0.937)NLVS(0.004)LGY(0.006)QHT(0.992)K 51.798 0.029022 8572900 888.6 897.29 924.28 1146.7 949.03 930.09 946.15 1179.2 1385.4 1173.9 TRUE FALSE 901.0431416 995.2591566 690.9340826 1073.155794 1078.303953 1095.028402 1125.677023 1079.0196 1518.47386 934.6585356 0.964034572 1.064837177 0.739236905 1.148179526 1.15368759 1.171581236 1.204372485 1.154453267 1.624629533 1 9.868295583 -6.456846063 6.860147708 1.216821861 0.93613648 0.384450377 0.167213212 0.268894119 23.54925654 0.04634161 0.068557374 3.49E-07 6.456846063 -0.280685381 SVNEILGLAESS(ph)PNEPK ddPTM_K562_Paclitaxel_30min_R1 2 SVNEILGLAESSPNEPK 17 0 Q9H8G2-2;Q9H8G2 Q9H8G2-2 CAAP1 Caspase activity and apoptosis inhibitor 1 1 SVNEILGLAES(0.296)S(0.704)PNEPK;SVNEILGLAES(0.405)S(0.595)PNEPK 149.97 7.31E-09 25354000 5531.9 5074.8 8944.2 6362.3 5085.3 4573.6 4166.1 5688.7 5506.3 7346 TRUE FALSE 5609.363667 5628.883826 6686.12609 5954.250555 5778.003955 5384.663743 4956.595726 5205.409427 6035.204718 5848.881168 0.959049006 0.962386423 1.143146167 1.018015306 0.987881919 0.920631415 0.847443397 0.88998379 1.031856272 1 12.51394496 -7.06960447 3.143673141 0.925782374 1.024232821 0.237480073 0.068203284 0.342925618 6.63473049 0.024581282 0.025533135 8.52E-08 7.06960447 0.098450447 SVPGTTSSPLVGDIS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 SVPGTTSSPLVGDISPK 17 0 Q9UQR0;H0Y6S1;B4DRC2;Q9UQR0-2 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 1 SVPGTTSS(0.001)PLVGDIS(0.999)PK;SVPGTTS(0.003)S(0.052)PLVGDIS(0.945)PK 205.88 2.62E-17 23062000 2673.76 2076.83 4109.2 2905.52 2365.34 1733.83 1954.36 2604.2 2315.93 3667.5 TRUE FALSE 2711.200889 2303.585323 3071.781638 2719.172952 2687.539354 2041.300406 2325.189608 2382.956955 2538.385424 2920.061487 0.928473904 0.788882472 1.051957862 0.931204005 0.920370809 0.699060761 0.796281043 0.816063965 0.869291772 1 11.51178303 -7.054822534 24.97865337 0.82077045 0.924623348 0.177128076 0.091983953 454.8563414 207243.7857 0.029823883 0.029824033 8.81E-08 7.054822534 0.103852899 SVPS(ph)IAAATGTHSR ddPTM_K562_Paclitaxel_30min_R1 2 SVPSIAAATGTHSR 14 0 Q8IY63-2;Q8IY63 Q8IY63-2 AMOTL1 Angiomotin-like protein 1 1 S(0.307)VPS(0.693)IAAATGTHSR;S(0.483)VPS(0.517)IAAATGTHSR 128.35 0.00016395 20791900 3381.2 2851.8 5180.6 3439.9 3476.1 3391.4 2883.3 4049.8 2883.3 4586.9 TRUE FALSE 3428.547232 3163.169168 3872.693457 3219.28021 3949.603671 3992.817172 3430.391123 3705.744212 3160.253848 3652.087262 0.938791159 0.866126393 1.06040551 0.881490496 1.081464759 1.093297308 0.939296045 1.014692132 0.865328132 1 11.83450552 -6.748976114 24.99809236 1.001476044 0.940498066 0.131721103 0.077975995 515.3750411 1033704.714 0.023324504 0.029888379 1.78E-07 6.748976114 -0.060977978 SVPTAYRVS(ph)RS(ph)PGASR ddPTM_K562_Paclitaxel_30min_R1 1 SVPTAYRVSRSPGASR 16 2 Q12872;Q12872-2 Q12872 SFSWAP "Splicing factor, suppressor of white-apricot homolog" 2 S(0.001)VPT(0.002)AY(0.011)RVS(0.986)RS(0.622)PGAS(0.378)R 110.84 0.0032072 5410700 5082.3 4449 5486.7 4996 4467.9 4176.9 3863.2 4472.2 4256.7 5181.4 TRUE FALSE 5153.46788 4934.756866 4101.514726 4675.578921 5076.503622 4917.614568 4596.222033 4092.258695 4665.575054 4125.427836 1.249195983 1.196180629 0.994203484 1.133356129 1.230539916 1.192025352 1.11412009 0.99195983 1.1309312 1 12.01032803 -8.026618368 5.955274251 1.046573841 1.160564059 0.357726247 0.074642957 0.234497317 27.18406353 0.036498881 0.021840903 9.41E-09 8.026618368 0.113990218 SVPVNNLPERSPT(ph)DSPR ddPTM_K562_Paclitaxel_30min_R1 1 SVPVNNLPERSPTDSPR 17 1 P49454 P49454 CENPF Centromere protein F 1 SVPVNNLPERS(0.21)PT(0.787)DS(0.002)PR 195.17 1.93E-11 29223000 701.08 593.13 816.72 554.4 592.88 601.84 530.17 690.35 531.5 866.68 TRUE FALSE 710.897283 657.8899392 610.5289349 518.8432654 673.6402935 708.5678737 630.7669898 631.7004585 582.5529498 690.0501403 1.030211055 0.9533944 0.88476025 0.751892124 0.976219342 1.026835345 0.914088634 0.915441388 0.844218291 1 9.430557384 -11.19997265 4.250809115 1.000030486 0.920994528 0.079932626 0.079442889 126003034.3 2.763162046 38722.02617 0.02032964 6.31E-12 11.19997265 -0.079035958 SVQEGENPDDGVRGS(ph)PPEDYR ddPTM_K562_Paclitaxel_30min_R1 2 SVQEGENPDDGVRGSPPEDYR 21 1 H7C5M1;Q5TCT4;A2A2V2;P42696-2;P42696 H7C5M1 RBM34 RNA-binding protein 34 1 SVQEGENPDDGVRGS(0.962)PPEDY(0.038)R;SVQEGENPDDGVRGS(0.999)PPEDY(0.001)R 84.113 0.0010845 184224000 1616.65 1532.45 2065.72 1982.83 1656.6 1643.13 1606.23 1872.05 1558.42 2041.04 TRUE FALSE 1639.288088 1699.768073 1544.203437 1855.660159 1882.256966 1934.516035 1911.003757 1713.007668 1708.113204 1625.074928 1.008746157 1.045962893 0.950235224 1.141892061 1.158258573 1.190416517 1.17594809 1.05410996 1.051098122 1 10.66629052 -6.272292559 24.91039284 1.120579299 1.006079571 0.384724852 0.061901908 667.7468783 1532622.593 0.018181105 0.027241246 5.34E-07 6.272292559 -0.114499729 SVREDAS(ph)PLPHVCCCK ddPTM_K562_Paclitaxel_30min_R1 1 SVREDASPLPHVCCCK 16 1 C9J7Z4;Q8NCE0-5;Q8NCE0-3;Q8NCE0-2;Q8NCE0 C9J7Z4 TSEN2 tRNA-splicing endonuclease subunit Sen2 1 S(0.086)VREDAS(0.914)PLPHVCCCK 70.334 0.023366 21571000 1718.8 1743 2442.4 2121.8 1569.5 1427.3 1562.4 1947.5 1743.2 2468 TRUE FALSE 1742.868503 1933.306634 1825.785913 1985.717245 1783.292472 1680.411615 1858.857244 1782.047719 1910.642149 1965.020245 0.886946843 0.983860924 0.929143563 1.010532716 0.907518625 0.855162495 0.945973584 0.90688517 0.972326954 1 10.94032846 -8.96218021 5.184338302 0.999823093 0.930513495 0.238476327 0.042626786 0.243150464 15.45439247 0.041893054 0.010913117 1.09E-09 8.96218021 -0.069309598 SVRIPS(ph)PNILK ddPTM_K562_Paclitaxel_30min_R1 1 SVRIPSPNILK 11 1 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 S(0.007)VRIPS(0.993)PNILK 81.632 0.023291 32009000 3557.3 3055.8 5353.9 3454.3 3182.6 2825.4 2865.5 3700 4982.1 4890.5 TRUE FALSE 3607.113175 3389.442578 4002.241729 3232.756659 3616.124002 3326.445019 3409.213666 3385.661905 5460.652966 3893.813416 0.926370319 0.870468668 1.027846304 0.830228959 0.928684458 0.854289783 0.875546233 0.869497725 1.402392047 1 11.92696804 -8.738953869 24.9999697 1.201196105 0.897861994 0.576499998 0.103992374 126.883485 141073.1888 0.063862845 0.024099242 1.82E-09 8.738953869 -0.30333411 SVS(ph)CDNVSK ddPTM_K562_Paclitaxel_30min_R1 2 SVSCDNVSK 9 0 A0A087WXN4;Q96CB8 A0A087WXN4 INTS12 Integrator complex subunit 12 1 S(0.139)VS(0.861)CDNVSK;S(0.289)VS(0.711)CDNVSK 107.97 0.007327 123172000 6094.3 5219.6 10713.4 7662.6 5307.5 3987 4118 6226.7 6316.1 6862.8 TRUE FALSE 6179.639003 5789.49358 8008.669668 7171.155133 6030.471357 4694.03847 4899.369003 5697.702969 6922.789626 5464.157593 1.130940844 1.059540008 1.465673259 1.312399031 1.10364155 0.859059862 0.896637573 1.042741332 1.266945455 1 12.41578338 -6.965637832 5.839068228 1.005356786 1.242671615 0.363147338 0.142778975 0.210948253 19.8224101 0.048724031 0.054640248 1.08E-07 6.965637832 0.237314829 SVS(ph)DQFYR ddPTM_K562_Paclitaxel_30min_R1 1 SVSDQFYR 8 0 P55010;H0YK29;H0YK11;H0YMJ8;H0YM54;H0YLZ1;H0YN40 P55010 EIF5 Eukaryotic translation initiation factor 5 1 S(0.044)VS(0.956)DQFYR 93.561 0.015431 7039400 1814.3 1552.9 2080.6 1879.3 1511.3 1646.9 1508.9 1834.4 1818 2104.4 TRUE FALSE 1839.705798 1722.450874 1555.326797 1758.770109 1717.164647 1938.954591 1795.205898 1678.55627 1992.627023 1675.522125 1.097989558 1.028008433 0.928263957 1.049684802 1.02485346 1.157224105 1.071430733 1.001810865 1.189257363 1 10.71039502 -7.049473261 24.99456741 1.084138269 1.021415603 0.154701755 0.0676709 685.1262319 346133.6593 0.021967048 0.021967336 8.92E-08 7.049473261 -0.062722666 SVS(ph)GS(ph)PEPAAK ddPTM_K562_Paclitaxel_30min_R1 1 SVSGSPEPAAK 11 0 A9Z1X7;Q8IYB3-2;Q8IYB3;E9PCT1 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 2 S(0.465)VS(0.536)GS(0.999)PEPAAK 112.64 1.72E-05 0 6512.1 4955.2 10638 6965.5 5494.8 4468.1 4841.8 7384.4 5568.2 8213 TRUE FALSE 6603.289492 5496.225493 7952.305331 6518.764006 6243.284788 5260.4548 5760.506274 6757.049128 6103.050489 6539.186092 1.009802963 0.840506053 1.216100172 0.996876968 0.954749521 0.804451001 0.880920988 1.033316537 0.933304299 1 12.67489536 -6.796339512 4.158451128 0.92530896 1.018559488 0.132645667 0.102605983 0.434976998 16.34419889 0.033288886 0.03976071 1.60E-07 6.796339512 0.093250528 SVS(ph)PLLSTHVLGK ddPTM_K562_Paclitaxel_30min_R1 1 SVSPLLSTHVLGK 13 0 Q96H12;X6RL08;X6R907;Q96H12-2 Q96H12 MSANTD3 Myb/SANT-like DNA-binding domain-containing protein 3 1 S(0.029)VS(0.852)PLLS(0.06)T(0.06)HVLGK 105.95 0.005797 5865000 1102.5 1128.3 2201.4 1310.8 972.79 1007.2 952.7 1451.5 1744.7 1746.5 TRUE FALSE 1117.938402 1251.49161 1645.629343 1226.731155 1105.300467 1185.812778 1133.469852 1328.186015 1912.286231 1390.562341 0.803946985 0.899989574 1.183427233 0.882183501 0.794858623 0.852757725 0.815116171 0.955143093 1.37518914 1 10.44145271 -8.598017156 7.950177908 1.184905521 0.895733174 0.431960295 0.134307828 0.240162306 22.04896026 0.092768916 0.034672258 2.52E-09 8.598017156 -0.289172347 SVS(ph)PLVWCR ddPTM_K562_Paclitaxel_30min_R1 1 SVSPLVWCR 9 0 Q9P270 Q9P270 SLAIN2 SLAIN motif-containing protein 2 1 S(0.043)VS(0.957)PLVWCR 89.171 0.01783 5924300 657.51 721.09 804.93 819.11 619.15 794.03 963.6 1001.9 967.9 1025.3 TRUE FALSE 666.7171686 799.8210448 601.7154663 766.5759508 703.4887123 934.8400718 1146.43807 916.7823413 1060.87112 816.3432972 0.816711757 0.979760656 0.737086307 0.939036253 0.861755973 1.145155567 1.404357791 1.123035302 1.29954043 1 9.673032167 -7.329842822 4.073070173 1.223073846 0.868729126 0.66185097 0.117170579 0.128901891 4.212232992 0.039854925 0.035344696 4.68E-08 7.329842822 -0.354344721 SVS(ph)PSPVPLLFQPDQNAPPIR ddPTM_K562_Paclitaxel_30min_R1 1 SVSPSPVPLLFQPDQNAPPIR 21 0 Q02241-2;Q02241-3 Q02241-2 KIF23 Kinesin-like protein KIF23 1 S(0.015)VS(0.93)PS(0.054)PVPLLFQPDQNAPPIR 201.22 2.38E-26 130230000 1849.4 1874.6 2077.7 1739.7 1591.1 1550.4 1673.2 1844.4 1737.1 2408.3 TRUE FALSE 1875.297306 2079.275167 1553.158938 1628.123429 1807.834758 1825.341671 1990.680965 1687.706708 1903.956217 1917.487138 0.977997332 1.084375027 0.809997057 0.849092229 0.942814542 0.951944675 1.038171744 0.880165856 0.99294341 1 10.90500119 -7.321257216 3.824637565 0.970411006 0.929532136 0.06245824 0.078422892 0.875842432 25.95133621 0.030642834 0.027324738 4.77E-08 7.321257216 -0.040878871 SVS(ph)PTFLNPSDENLK ddPTM_K562_Paclitaxel_30min_R1 1 SVSPTFLNPSDENLK 15 0 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 S(0.002)VS(0.83)PT(0.169)FLNPSDENLK 176.29 1.54E-06 65612000 1127.2 1058.7 2566.2 1652.2 1084.6 890.87 1064.4 1582.1 1173.5 1748.6 TRUE FALSE 1142.984278 1174.292446 1918.331072 1546.235287 1232.340882 1048.853286 1266.364343 1447.69073 1286.219918 1392.23436 0.820971174 0.843458889 1.377879419 1.110614226 0.885153332 0.753359719 0.909591359 1.03983264 0.92385302 1 10.44318637 -6.770630275 24.96030129 0.911907681 1.048579249 0.115995975 0.160091575 422.2037477 1146602.557 0.053842734 0.061905607 1.70E-07 6.770630275 0.136671567 SVS(ph)TPSEAGSQDSGDGAVGSR ddPTM_K562_Paclitaxel_30min_R1 1 SVSTPSEAGSQDSGDGAVGSR 21 0 E9PGG1;E7EQU2;E7EQL5;E7EV09;E7EUM4;E7ESD3;E7EMU4;E7ETL8;E7ET01;E7ERH4;E7ERR6;Q13409-6;Q13409-3;Q13409-7;Q13409-2;Q13409-5;Q13409 E9PGG1 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 1 S(0.088)VS(0.453)T(0.453)PS(0.006)EAGSQDSGDGAVGSR 139.9 3.27E-16 6632600 630.59 739.71 818.89 647.57 687.31 547.1 485.23 874.63 545.81 799.81 TRUE FALSE 639.4202055 820.4740393 612.1510916 606.0377586 780.9332583 644.1205033 577.2998594 800.3247222 598.2374892 636.808283 1.004101584 1.288416092 0.96128004 0.951680081 1.226323965 1.011482609 0.906552058 1.256774988 0.939431074 1 9.314715291 -2.000000001 0.105252811 0.983835087 1.332836969 0.02866991 0.134740028 550.3292452 4.081711144 1.436540731 27.80794732 0.01 2.000000001 0.349001882 SVS(ph)TTNIAGHFNDESPLGLR ddPTM_K562_Paclitaxel_30min_R1 2 SVSTTNIAGHFNDESPLGLR 20 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 S(0.13)VS(0.482)T(0.37)T(0.017)NIAGHFNDESPLGLR;S(0.003)VS(0.488)T(0.488)T(0.021)NIAGHFNDESPLGLR 129.2 2.59E-07 178916000 3750.8 2906.3 3091.4 1906.64 1366.62 1377.98 1076.09 1188.41 997 1478.5 TRUE FALSE 3803.322772 3223.619662 2310.937836 1784.356644 1552.776781 1622.345405 1280.27246 1087.447153 1092.766305 1177.180888 3.2308737 2.738423376 1.963111922 1.515787983 1.319063872 1.378161522 1.087574962 0.923772347 0.928290899 1 10.20112031 -5.160007533 0.546275188 0.961568174 5.206250231 0.982747544 0.099627453 0.546866485 0.115297454 0.060831485 1.519611037 6.92E-06 5.160007533 4.244682057 up SVS(ph)TTNIAGHFNDESPLGLRR ddPTM_K562_Paclitaxel_30min_R1 1 SVSTTNIAGHFNDESPLGLRR 21 1 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 S(0.184)VS(0.692)T(0.095)T(0.028)NIAGHFNDESPLGLRR 70.295 0.0048499 59345000 707.65 454.73 540.59 461.44 321.24 245.76 217.14 259.84 361.58 202.46 TRUE FALSE 717.5592833 504.3789592 404.1113686 431.8453037 364.9983266 289.3420854 258.3411815 237.7649701 396.3113746 161.1985409 4.451400611 3.128930054 2.506917038 2.678965339 2.264278105 1.794942335 1.602627295 1.474982148 2.45852954 1 7.332694875 -2 0.355456506 1.536048492 35.87171736 0.843434501 0.367527638 23.01462123 0.322997788 0.301453625 532.3168733 0.01 2 34.33566886 SVSASS(ph)GPCSPAAPHPPPPPR ddPTM_K562_Paclitaxel_30min_R1 1 SVSASSGPCSPAAPHPPPPPR 21 0 Q86UY5 Q86UY5 FAM83A Protein FAM83A 1 S(0.008)VS(0.025)AS(0.158)S(0.616)GPCS(0.193)PAAPHPPPPPR 76.668 0.0024074 26699000 500.46 526.97 594.25 417.38 327.21 389.18 489.78 585.79 369.25 1001.3 TRUE FALSE 507.4679841 584.5063667 444.2242379 390.6111149 371.7815417 458.1956086 582.7131982 536.0234831 404.7181124 797.2345104 0.636535395 0.733167417 0.557206483 0.48995761 0.466338997 0.574731278 0.730918181 0.672353587 0.507652525 1 9.638860352 -11.72774591 2.955450242 1.063037016 0.597978175 0.64019719 0.090733856 61400781.18 51291415.84 28362320.74 0.02558578 1.87E-12 11.72774591 -0.465058841 SVSASSGPCS(ph)PAAPHPPPPPR ddPTM_K562_Paclitaxel_30min_R1 2 SVSASSGPCSPAAPHPPPPPR 21 0 Q86UY5 Q86UY5 FAM83A Protein FAM83A 1 SVS(0.001)AS(0.002)S(0.012)GPCS(0.985)PAAPHPPPPPR;S(0.001)VS(0.003)AS(0.009)S(0.044)GPCS(0.944)PAAPHPPPPPR 127.9 8.15E-08 61745000 2459.6 2208.1 2504.7 2743.8 2326.6 1955.58 2126.73 2278 1983.38 2533.6 TRUE FALSE 2494.041989 2449.187825 1872.357507 2567.824949 2643.52231 2302.374655 2530.265915 2084.469681 2173.892511 2017.250929 1.236356842 1.21412155 0.928172832 1.272932837 1.310457847 1.141342716 1.254313917 1.033321959 1.077651015 1 10.97817484 -8.275857706 23.92379121 1.041614824 1.190004746 0.335194487 0.101131078 611.1537026 1014055.938 0.056874327 0.027544711 5.30E-09 8.275857706 0.148389921 SVSGS(ph)PEPAAK ddPTM_K562_Paclitaxel_30min_R1 2 SVSGSPEPAAK 11 0 A9Z1X7;Q8IYB3-2;Q8IYB3;E9PCT1 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 S(0.191)VS(0.071)GS(0.738)PEPAAK;S(0.018)VS(0.412)GS(0.57)PEPAAK 140.63 0.00062663 80862000 7729.3 6632.2 15030.7 9811.6 7064.4 6823.1 5640.3 9036.6 6518 9623.2 TRUE FALSE 7837.534047 7356.326025 11236.01389 9182.327891 8026.690881 8033.080984 6710.517481 8268.884425 7144.083023 7661.986558 1.022911485 0.960106882 1.466462229 1.198426521 1.047599186 1.048433187 0.875819532 1.079208944 0.932406102 1 12.90350278 -7.005888112 2.776935313 0.985639636 1.167434069 0.268212437 0.135281775 0.396687439 6.188058157 0.049379354 0.053505275 9.87E-08 7.005888112 0.181794432 SVSGS(ph)PESDELQELR ddPTM_K562_Paclitaxel_30min_R1 1 SVSGSPESDELQELR 15 0 Q7Z2Z1-2;Q7Z2Z1 Q7Z2Z1-2 TICRR Treslin 1 S(0.002)VS(0.01)GS(0.908)PES(0.081)DELQELR 174.52 1.65E-06 12015000 926.01 752.31 935.13 941.09 967.53 877.27 774.74 847.88 1034.6 1190.4 TRUE FALSE 938.976997 834.4497499 699.044866 880.7326996 1099.323966 1032.841517 921.7428706 775.8473017 1133.977953 947.7958266 0.990695433 0.880410872 0.737547947 0.929243066 1.159874243 1.089729969 0.972512059 0.818580627 1.196436955 1 9.888432498 -6.530779179 24.77796885 1.030970091 0.864430378 0.316532078 0.113680012 205.6192706 644875.5005 0.034434904 0.044541001 2.95E-07 6.530779179 -0.166539714 SVSMLSLNT(ph)PNSNR ddPTM_K562_Paclitaxel_30min_R1 1 SVSMLSLNTPNSNR 14 0 H7C3G1;Q9H8V3-2;Q9H8V3-4;Q9H8V3;Q9H8V3-3 H7C3G1 ECT2 Protein ECT2 1 SVSMLSLNT(0.994)PNS(0.005)NR 152.88 0.00023695 8331000 923.33 915.89 1228.3 877.23 889.18 805.08 697.6 1177.5 845.66 1332 TRUE FALSE 936.2594687 1015.889968 918.2004736 820.9683941 1010.30137 947.8496341 829.9659583 1077.464025 926.8894215 1060.537669 0.882815855 0.957900881 0.865787704 0.774105832 0.952631292 0.89374443 0.782589796 1.015960165 0.873980669 1 10.05058015 -9.071246334 0.900622027 0.995711637 0.87973624 0.189168262 0.070550325 1.133097618 2.044647562 0.066906866 0.023236308 8.49E-10 9.071246334 -0.115975397 SVSPS(ph)PVPLLFQPDQNAPPIR ddPTM_K562_Paclitaxel_30min_R1 2 SVSPSPVPLLFQPDQNAPPIR 21 0 Q02241-2;Q02241-3 Q02241-2 KIF23 Kinesin-like protein KIF23 1 S(0.017)VS(0.36)PS(0.623)PVPLLFQPDQNAPPIR;S(0.009)VS(0.086)PS(0.905)PVPLLFQPDQNAPPIR 88.574 0.00075765 162901000 2188.37 2420.71 2939.8 2579.99 2423.22 2265.81 2015.28 2496.09 2207.65 2665.01 TRUE FALSE 2219.013932 2685.011304 2197.611131 2414.520989 2753.303589 2667.61959 2397.66886 2284.031574 2419.704647 2121.879499 1.045777544 1.265392924 1.035690826 1.137916168 1.297577733 1.257196552 1.129974092 1.076419078 1.140359124 1 11.05112701 -9.059065831 0.975792829 1.005399423 1.170773627 0.235108002 0.08648019 0.937023265 1.985618633 0.08499578 0.028586424 8.73E-10 9.059065831 0.165374203 SVSPT(ph)FLNPSDENLK ddPTM_K562_Paclitaxel_30min_R1 1 SVSPTFLNPSDENLK 15 0 Q9UKA4 Q9UKA4 AKAP11 A-kinase anchor protein 11 1 S(0.002)VS(0.407)PT(0.591)FLNPSDENLK 138.01 7.37E-06 64124000 3919.8 3332.1 6025.8 4691.9 3408.1 3176.7 2943.7 5033.3 4131.4 5341.7 TRUE FALSE 3974.689294 3695.909946 4504.512264 4390.982534 3872.34092 3740.043142 3502.251708 4605.689748 4528.23943 4253.058608 0.934548442 0.869000474 1.059123017 1.03242935 0.91048379 0.879377287 0.823466599 1.082912363 1.064701864 1 12.05428502 -8.290207016 24.99580525 1.055355359 0.933680786 0.376606011 0.070154429 861.5464329 748581.0984 0.041898153 0.020132553 5.13E-09 8.290207016 -0.121674573 SVSS(ph)PTSSNTPTPTK ddPTM_K562_Paclitaxel_30min_R1 1 SVSSPTSSNTPTPTK 15 0 Q5M775;Q5M775-4;Q5M775-2;Q5M775-5;Q5M775-3 Q5M775 SPECC1 Cytospin-B 1 SVS(0.006)S(0.976)PT(0.017)S(0.001)SNTPTPTK 211.13 4.69E-14 15511000 3534.7 2877.1 5948.6 4147.1 3207.1 2490.5 2552.8 3809.9 3861.5 4243.4 TRUE FALSE 3584.196705 3191.231508 4446.802359 3881.123568 3643.961317 2932.155207 3037.180473 3486.225214 4232.414329 3378.592751 1.060854909 0.944544591 1.316169982 1.148739684 1.078544112 0.867862872 0.898948378 1.031857188 1.252715151 1 11.72220675 -7.011736909 24.00691732 1.001742403 1.118682892 0.133627648 0.128825612 696.0300376 1423678.56 0.04405243 0.046543963 9.73E-08 7.011736909 0.116940488 SVSS(ph)YGNIR ddPTM_K562_Paclitaxel_30min_R1 1 SVSSYGNIR 9 0 Q8N122;Q8N122-3 Q8N122 RPTOR Regulatory-associated protein of mTOR 1 SVS(0.136)S(0.864)YGNIR 94.363 0.014224 153450000 2318.3 2255.2 2893.4 2776.8 2167.1 2235.6 2629.3 2846.1 2967.8 2950.2 TRUE FALSE 2350.763353 2501.430363 2162.925385 2598.708476 2462.295709 2632.052271 3128.195949 2604.30604 3252.87045 2348.947621 1.000772998 1.064915344 0.920806137 1.106328832 1.048254839 1.120524037 1.331743595 1.108711841 1.384820343 1 11.19779883 -7.434474628 3.206015378 1.216698856 1.028077434 0.361416214 0.110287936 0.257279162 5.07677669 0.039530218 0.033299843 3.68E-08 7.434474628 -0.188621423 SVSSNVASVS(ph)PIPAGSK ddPTM_K562_Paclitaxel_30min_R1 2 SVSSNVASVSPIPAGSK 17 0 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 SVSSNVAS(0.281)VS(0.7)PIPAGS(0.018)K;S(0.001)VS(0.001)S(0.001)NVAS(0.089)VS(0.909)PIPAGSK 130.36 3.16E-07 27762000 5770.52 4994.67 9148.3 6038.64 4959.07 5020.16 3912.01 5632.01 4943.08 7425.72 TRUE FALSE 5851.325084 5540.004961 6838.69852 5651.348658 5634.579292 5910.414889 4654.293475 5153.535597 5417.88492 5912.354188 0.989677698 0.937021834 1.156679438 0.955854213 0.953017886 0.999671992 0.787214928 0.871655424 0.916366772 1 12.52951698 -7.720623204 24.73207325 0.883113907 0.999015705 0.313133916 0.075407866 148.6106571 90048.51528 0.028702939 0.022232908 1.90E-08 7.720623204 0.115901798 SVSSNVASVSPIPAGS(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 SVSSNVASVSPIPAGSK 17 0 Q9Y6G9;E9PHI6 Q9Y6G9 DYNC1LI1 Cytoplasmic dynein 1 light intermediate chain 1 1 SVSSNVASVS(0.46)PIPAGS(0.54)K 138.98 3.33E-09 31277000 5590.5 4431.9 8708.9 5665.2 4254.6 4490.6 3844.6 5425.5 4381.4 6720.5 TRUE FALSE 5668.784248 4915.78983 6510.230485 5301.859428 4834.148551 5286.944859 4574.09278 4964.56991 4802.253047 5350.858411 1.059415857 0.918691816 1.216670296 0.990842781 0.903434212 0.988055458 0.854833454 0.927808125 0.897473392 1 12.38555464 -6.521505689 18.41844044 0.926353252 1.059211453 0.382348789 0.077618703 1.809390971 24267.30381 0.022107107 0.029233411 3.01E-07 6.521505689 0.132858201 SVSSS(ph)SYRR ddPTM_K562_Paclitaxel_30min_R1 1 SVSSSSYRR 9 1 P08670;B0YJC4;A0A1B0GVG8;A0A1B0GTT5 P08670 VIM Vimentin 1 SVSS(0.001)S(0.836)S(0.162)YRR 86.189 0.01412 1401700 384.77 369.76 708.5 392.01 387.43 377.56 428.64 461.94 405.99 603.73 TRUE FALSE 390.1579671 410.1316472 529.6304124 366.8682332 440.2045252 444.5149648 509.9722023 422.6953137 444.9871535 480.6894946 0.811663187 0.853215333 1.101813995 0.763212505 0.915777295 0.924744497 1.060918135 0.879352094 0.925726812 1 8.908961464 -7.345826669 3.602802958 0.959574372 0.89158907 0.124655256 0.094345433 0.622798556 15.41191375 0.035104143 0.030924052 4.51E-08 7.345826669 -0.067985302 SVSSVLSS(ph)LTPAK ddPTM_K562_Paclitaxel_30min_R1 1 SVSSVLSSLTPAK 13 0 H0Y4T7;E7ESY4;Q13330-3;Q13330;F8W9Y9 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 SVS(0.014)S(0.003)VLS(0.111)S(0.647)LT(0.226)PAK 172.58 7.42E-05 16301000 1754.4 1418 2362.4 1579.3 1160.9 1287.6 1725.8 2476.7 1334.1 3076.9 TRUE FALSE 1778.967013 1572.822035 1765.982902 1478.010767 1319.034234 1515.937781 2053.261541 2266.288876 1462.246266 2449.826091 0.72616053 0.64201375 0.720860517 0.603312526 0.538419539 0.618794039 0.838125428 0.925081533 0.596877579 1 11.25846362 -7.764232921 24.99978152 0.833777971 0.638785853 0.443706901 0.108728671 71.05882595 635902.38 0.043103231 0.030525357 1.72E-08 7.764232921 -0.194992117 SVSSVLSSLT(ph)PAK ddPTM_K562_Paclitaxel_30min_R1 1 SVSSVLSSLTPAK 13 0 H0Y4T7;E7ESY4;Q13330-3;Q13330;F8W9Y9 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 SVSSVLS(0.012)S(0.003)LT(0.985)PAK 180.11 0.00051479 16263000 1811.3 1603.8 2320 1488.8 1119.2 1277.6 1487.9 2486.8 1205.3 3309.6 TRUE FALSE 1836.663788 1778.908308 1734.287307 1393.315032 1271.653988 1504.164422 1770.221258 2275.530818 1321.07445 2635.101703 0.696999203 0.675081461 0.658148148 0.5287519 0.482582508 0.570818356 0.671784795 0.863545728 0.501337178 1 11.36364293 -11.17315103 0.433058777 1.168144493 0.61356973 0.508279671 0.108715012 17.63713745 2.010348645 3.644826855 0.066756987 6.71E-12 11.17315103 -0.554574763 SVST(ph)PSEAGSQDSGDGAVGSR ddPTM_K562_Paclitaxel_30min_R1 3 SVSTPSEAGSQDSGDGAVGSR 21 0 E9PGG1;E7EQU2;E7EQL5;E7EV09;E7EUM4;E7ESD3;E7EMU4;E7ETL8;E7ET01;E7ERH4;E7ERR6;Q13409-6;Q13409-3;Q13409-7;Q13409-2;Q13409-5;Q13409 E9PGG1 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 1 S(0.001)VS(0.164)T(0.83)PS(0.005)EAGSQDSGDGAVGSR;S(0.001)VS(0.113)T(0.866)PS(0.011)EAGS(0.009)QDSGDGAVGSR;S(0.002)VS(0.175)T(0.783)PS(0.04)EAGSQDSGDGAVGSR 165.66 3.14E-54 25400600 2521.45 1946.78 3232.12 2619.64 1982.6 2115.85 2094.6 2722.79 2596.33 3039.52 TRUE FALSE 2556.758079 2159.336024 2416.131332 2451.628015 2252.663686 2491.066289 2492.039415 2491.471994 2845.719097 2420.064156 1.056483595 0.892263959 0.998374909 1.013042572 0.930828086 1.029338947 1.029741054 1.029506589 1.175885809 1 11.24082958 -7.915374615 1.418343731 1.079012012 0.977527495 0.287219585 0.060227258 0.501434838 1.984313815 0.038330567 0.019575586 1.22E-08 7.915374615 -0.101484517 SVST(ph)RSPHQLLSPSSFSPSATPSQK ddPTM_K562_Paclitaxel_30min_R1 2 SVSTRSPHQLLSPSSFSPSATPSQK 25 1 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 1 S(0.04)VS(0.128)T(0.416)RS(0.416)PHQLLSPSSFSPSATPSQK;S(0.023)VS(0.099)T(0.439)RS(0.439)PHQLLSPSSFSPSATPSQK 149.64 5.67E-25 92450000 3363 2456.9 4951.6 3392.5 2264.6 2417.3 2153.9 2989.2 3127.7 3694.6 TRUE FALSE 3410.092376 2725.152651 3701.507339 3174.920234 2573.07686 2845.974214 2562.591281 2735.248802 3428.12956 2941.638492 1.159249304 0.926406375 1.25831483 1.079303335 0.874708727 0.967479254 0.87114419 0.929838527 1.165380984 1 11.52240424 -6.614684219 7.443441211 0.960194893 1.107661887 0.279770692 0.108698639 0.296618951 20.67410325 0.031829891 0.041145702 2.43E-07 6.614684219 0.147466994 SVSTPSEAGSQDS(ph)GDGAVGSR ddPTM_K562_Paclitaxel_30min_R1 2 SVSTPSEAGSQDSGDGAVGSR 21 0 E9PGG1;E7EQU2;E7EQL5;E7EV09;E7EUM4;E7ESD3;E7EMU4;E7ETL8;E7ET01;E7ERH4;E7ERR6;Q13409-6;Q13409-3;Q13409-7;Q13409-2;Q13409-5;Q13409 E9PGG1 DYNC1I2 Cytoplasmic dynein 1 intermediate chain 2 1 SVST(0.001)PS(0.055)EAGS(0.005)QDS(0.937)GDGAVGSR;S(0.01)VS(0.009)T(0.054)PS(0.03)EAGS(0.003)QDS(0.893)GDGAVGSR 154.08 1.26E-17 24052000 4315.1 3914.3 5472.2 4876.7 4511.3 3884.28 3753.74 4858.6 3984.5 4898.3 TRUE FALSE 4375.524713 4341.676511 4090.675431 4563.930289 5125.815437 4573.10252 4465.992569 4445.831604 4367.229028 3900.023771 1.121922575 1.113243602 1.048884743 1.170231403 1.31430364 1.172583243 1.14511932 1.139949873 1.11979549 1 11.9292672 -9.32971512 1.363632515 1.000154916 1.156208801 0.346278396 0.063378299 1.559775421 4.627544771 0.0680249 0.020185757 4.68E-10 9.32971512 0.156053885 SVSTRS(ph)PHQLLS(ph)PSS(ph)FSPSATPSQK ddPTM_K562_Paclitaxel_30min_R1 1 SVSTRSPHQLLSPSSFSPSATPSQK 25 1 E9PIQ6;A0A3B3ITS5;Q14181 E9PIQ6 POLA2 DNA polymerase alpha subunit B 3 S(0.073)VS(0.282)T(0.31)RS(0.376)PHQLLS(0.944)PS(0.184)S(0.473)FS(0.314)PS(0.032)AT(0.009)PS(0.003)QK 59.818 0.010085 7853700 1340.9 1262.5 2477.2 1793.6 1088.9 1215.5 1195.7 1633.3 2140.3 1645 TRUE FALSE 1359.676737 1400.34402 1851.800222 1678.566524 1237.226615 1431.051859 1422.577833 1494.54097 2345.885378 1309.748097 1.038120796 1.069170494 1.41385983 1.281594932 0.944629443 1.092616101 1.086146135 1.141090393 1.791096611 1 10.35507365 -8.591773003 24.9999984 1.419066966 1.135972721 0.188829482 0.216208822 75.01290299 27217.87856 0.140076123 0.052943786 2.56E-09 8.591773003 -0.283094245 SVSTTGS(ph)LQR ddPTM_K562_Paclitaxel_30min_R1 2 SVSTTGSLQR 10 0 Q7Z460;H0Y5T1;F8WA11;Q7Z460-2;Q7Z460-5;Q7Z460-3;Q7Z460-4 Q7Z460;Q7Z460-4 CLASP1 CLIP-associating protein 1 1 S(0.079)VS(0.026)T(0.003)T(0.002)GS(0.89)LQR;S(0.057)VS(0.024)T(0.006)T(0.006)GS(0.908)LQR 111.94 0.0048584 225210000 2613.6 3110.5 3761.6 3321.8 2916.7 3258.6 3615.3 4872.7 3953.6 5174.4 TRUE FALSE 2650.198464 3450.114909 2811.937557 3108.754616 3314.00392 3836.466957 4301.284302 4458.733721 4333.360945 4119.85444 0.643274781 0.837436118 0.68253323 0.754578751 0.804398303 0.9312142 1.04403793 1.082255159 1.051823798 1 12.00837765 -7.354373449 1.605267543 1.056278631 0.732292809 0.887576784 0.051131452 0.111425828 0.571685614 0.021985924 0.01861652 4.42E-08 7.354373449 -0.323985822 SVSTTNIAGHFNDES(ph)PLGLR ddPTM_K562_Paclitaxel_30min_R1 1 SVSTTNIAGHFNDESPLGLR 20 0 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 SVSTTNIAGHFNDES(1)PLGLR 82.517 0.0024109 39706000 1773.2 1788.7 1619.5 1492.2 1537.2 1588.1 1400.5 1802.9 1224.3 2173.5 TRUE FALSE 1798.030271 1983.996315 1210.637195 1396.496971 1746.592665 1869.727237 1666.237564 1649.732392 1341.899485 1730.539507 1.03899984 1.146461151 0.699572122 0.806972025 1.009276389 1.080430253 0.962842834 0.953305247 0.775422624 1 10.75700616 -8.563389057 24.96992944 0.879928683 0.960447421 0.047954136 0.132100996 529.7301959 326508.5247 0.094525429 0.035727322 2.73E-09 8.563389057 0.080518738 SVSTTNIAGHFNDES(ph)PLGLRR ddPTM_K562_Paclitaxel_30min_R1 3 SVSTTNIAGHFNDESPLGLRR 21 1 V9GYM8;A0A5F9ZI21;Q92974-3;Q92974-2;Q92974;V9GYF5;V9GYG5;V9GZ14 V9GYM8 ARHGEF2 Rho guanine nucleotide exchange factor 2 1 SVSTTNIAGHFNDES(1)PLGLRR;SVSTT(0.001)NIAGHFNDES(0.998)PLGLRR;SVSTT(0.001)NIAGHFNDES(0.998)PLGLRR 64.331 0.0099355 168362000 4915.33 4217.43 5450.79 4969.91 4175.13 4932.37 3915.65 4490.81 4118.5 5420.83 TRUE FALSE 4984.159785 4677.90327 4074.67065 4651.162217 4743.853392 5807.056566 4658.624146 4109.28766 4514.100327 4316.06187 1.154793405 1.083836008 0.944071418 1.077640302 1.09911617 1.345452577 1.079369176 0.952091926 1.045884063 1 12.07549983 -8.013920036 24.55461792 1.002538877 1.114342285 0.234269161 0.095383477 883.4199397 1558327.816 0.047139637 0.028684631 9.68E-09 8.013920036 0.111803408 SVT(ph)PASTLTK ddPTM_K562_Paclitaxel_30min_R1 2 SVTPASTLTK 10 0 A8MQ02;J3KN01;P55196;P55196-5;P55196-3;P55196-1;Q5TIG5;P55196-2;P55196-6 A8MQ02 MLLT4 Afadin 1 S(0.289)VT(0.709)PAST(0.002)LTK;S(0.209)VT(0.788)PAS(0.001)T(0.002)LTK 105.25 0.016177 116538000 9165.6 8706.6 14604 10019.1 7239.4 7614.5 7749 11665.5 9074.9 13052.9 TRUE FALSE 9293.946678 9657.216032 10917.03958 9376.51977 8225.528844 8964.824662 9219.332298 10674.44296 9946.584693 10392.71182 0.894275416 0.929229657 1.050451487 0.902220704 0.791470888 0.862606875 0.887095925 1.027108531 0.957073079 1 13.34328453 -8.254880428 24.74194777 0.994068104 0.903385862 0.312338054 0.062713076 627.0186286 2365278.965 0.034151078 0.019099339 5.56E-09 8.254880428 -0.090682242 SVTEQGAELSNEER ddPTM_K562_Paclitaxel_30min_R1 1 SVTEQGAELSNEER 14 0 E5RGE1;E5RIR4;E9PD24;E7EVZ2;E7ESK7;E7EX29;P63104 E5RGE1 YWHAZ 14-3-3 protein zeta/delta 0 150.09 0.00040134 20862000 257.53 214.8 195.96 228.73 237.52 245.7 218.28 364.25 223.22 149.92 FALSE TRUE 261.1362145 238.2525904 146.4874744 214.0602816 269.8742452 289.2714452 259.6974905 333.3046889 244.6612784 119.3662217 2.187689372 1.995979993 1.227210448 1.793307005 2.260892918 2.4233945 2.175636347 2.792286496 2.049669286 1 6.89925083 -6.756336641 20.97652647 2.224847897 1.773981309 0.064588731 0.491511741 31.38115425 128993.787 0.142012489 0.176861922 1.75E-07 6.756336641 -0.450866588 SVTVVEDDEDEDGDDLLHHHHGSHCSSSGDPAEYNLR ddPTM_K562_Paclitaxel_30min_R1 1 SVTVVEDDEDEDGDDLLHHHHGSHCSSSGDPAEYNLR 37 0 P02545-6;P02545;P02545-5;P02545-4 P02545-6 LMNA Prelamin-A/C;Lamin-A/C 0 57.088 0.0001807 22800000 1556.3 1242.8 1621.8 1518.3 1389.8 1242.5 1371.7 1562.1 1532.4 1566.6 FALSE TRUE 1578.093002 1378.493107 1212.356532 1420.923034 1579.11429 1462.839929 1631.972914 1429.389855 1679.593867 1247.32606 1.265180815 1.105158588 0.971964405 1.139175296 1.265999597 1.1727807 1.308377149 1.145963273 1.346555581 1 10.28462293 -6.577130116 7.246427232 1.216514623 1.103831058 0.122167255 0.111808377 0.368272437 40.45373366 0.031721881 0.041138386 2.65E-07 6.577130116 -0.112683565 SVTVVEDDEDEDGDDLLHHHHVSGS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 SVTVVEDDEDEDGDDLLHHHHVSGSR 26 0 Q3BDU5;P02545-2;Q5TCI8 Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C 1 SVTVVEDDEDEDGDDLLHHHHVS(0.389)GS(0.611)R;SVTVVEDDEDEDGDDLLHHHHVS(0.304)GS(0.696)R 67.396 0.0010819 63488000 6416.3 5932.3 6958.5 6058.9 5566.3 6037 5715.1 7191.5 3505 8462.7 TRUE FALSE 6506.147996 6580.008576 5201.740613 5670.309273 6324.524298 7107.577186 6799.51039 6580.537187 3841.670911 6737.997095 0.965590799 0.976552599 0.772001018 0.841542255 0.938635652 1.054850141 1.009129315 0.976631051 0.570150277 1 12.71810409 -12.37241122 2.344261277 1.684034363 0.90837034 0.043738684 0.135115736 7235492.896 2055536.119 26344696.5 0.03399724 4.24E-13 12.37241122 -0.775664023 SVTVVEDDEDEDGDDLLHHHHVSGSR ddPTM_K562_Paclitaxel_30min_R1 3 SVTVVEDDEDEDGDDLLHHHHVSGSR 26 0 Q3BDU5;P02545-2;Q5TCI8 Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C 0 ;; 121.39 2.44E-09 142835000 7286.7 6713.1 7920.1 8189.7 7337.7 6826.5 6610.5 7974.7 5789.3 8210.5 FALSE TRUE 7388.736281 7446.05896 5920.5728 7664.449298 8337.218968 8037.083926 7864.807866 7297.199458 6345.388132 6537.195593 1.130260855 1.139029551 0.905674722 1.172436894 1.275351005 1.229439109 1.203085903 1.116258395 0.97065906 1 12.67445615 -8.685389829 4.570491856 0.984790496 1.149990365 0.328946586 0.092878031 0.265186586 9.931051808 0.079563495 0.026606272 2.06E-09 8.685389829 0.165199869 SVTVVEDDEDEDGDDLLHHHHVSGSRR ddPTM_K562_Paclitaxel_30min_R1 1 SVTVVEDDEDEDGDDLLHHHHVSGSRR 27 1 Q3BDU5;P02545-2;Q5TCI8 Q3BDU5 LMNA Prelamin-A/C;Lamin-A/C 0 80.412 6.78E-05 20554000 1544.9 1450.3 1567.7 1637.9 1220.2 1364 1338.5 1413 2672.9 1683.2 FALSE TRUE 1566.533366 1608.648659 1171.914746 1532.852425 1386.411898 1605.886248 1592.473388 1292.95683 2929.643988 1340.162916 1.168912636 1.200338137 0.874456927 1.14378066 1.03450997 1.198276888 1.188268507 0.96477586 2.186035707 1 10.38819268 -8.704304917 24.99999979 1.593069806 1.098652565 0.327078265 0.284765546 73.24171288 32047.7347 0.173197293 0.065462321 1.98E-09 8.704304917 -0.494417241 SVVS(ph)DLEADDVK ddPTM_K562_Paclitaxel_30min_R1 1 SVVSDLEADDVK 12 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 SVVS(1)DLEADDVK 107.14 8.63E-05 0 920.24 778.44 2176.2 1182.7 696.3 821.82 525.41 1174 652.16 1406.5 TRUE FALSE 933.1261992 863.4327117 1626.791395 1106.846916 791.1478485 967.5582381 625.1038047 1074.261372 714.8028819 1119.854528 0.83325662 0.771022209 1.452681 0.988384552 0.706473768 0.864003506 0.558200899 0.959286537 0.638299765 1 10.12909562 -6.68184467 6.421515867 0.778477804 1.029303698 0.210314382 0.211548918 0.321081992 20.66940546 0.06311474 0.081395883 2.08E-07 6.68184467 0.250825894 SVVS(ph)DLEADDVKGSVPLS(ph)SSPPATHFPDETEITNPVPK ddPTM_K562_Paclitaxel_30min_R1 1 SVVSDLEADDVKGSVPLSSSPPATHFPDETEITNPVPK 38 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 2 S(0.083)VVS(0.792)DLEADDVKGS(0.138)VPLS(0.255)S(0.255)S(0.255)PPAT(0.215)HFPDET(0.005)EIT(0.003)NPVPK 44.814 0.012589 43229000 1065.2 908.98 2352.3 1337 901.74 680.33 666.67 1090.4 1389.6 1663.1 TRUE FALSE 1080.116086 1008.22551 1758.432772 1251.250804 1024.572255 800.9769732 793.1671522 997.7637139 1523.077289 1324.159307 0.815699501 0.761408016 1.327961645 0.94493978 0.773753014 0.60489472 0.598996773 0.753507307 1.150222092 1 10.37086099 -6.725342178 5.854364472 0.779826747 0.976349671 0.093839596 0.21114046 0.369379689 33.24615052 0.066368826 0.084172108 1.88E-07 6.725342178 0.196522924 SVVS(ph)DLEADDVKGSVPLSSSPPAT(ph)HFPDETEITNPVPK ddPTM_K562_Paclitaxel_30min_R1 1 SVVSDLEADDVKGSVPLSSSPPATHFPDETEITNPVPK 38 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 2 S(0.209)VVS(0.754)DLEADDVKGS(0.093)VPLS(0.187)S(0.177)S(0.167)PPAT(0.401)HFPDET(0.011)EIT(0.002)NPVPK 49.378 0.0010957 51551000 991.25 844.29 2305.8 1208.7 924.15 520.6 364.28 1000 1113.3 1394.9 TRUE FALSE 1005.130558 936.4724374 1723.672272 1131.179392 1050.034876 612.9211004 433.4002283 915.0437582 1220.237439 1110.618614 0.905018649 0.843198939 1.551992961 1.018512906 0.945450457 0.551873607 0.390233175 0.823904576 1.098700691 1 10.11714777 -6.970511254 3.519852415 0.737823519 1.09389024 0.227874071 0.26053668 0.332825628 8.734975148 0.091198649 0.100845864 1.07E-07 6.970511254 0.356066722 SVVS(ph)FDK ddPTM_K562_Paclitaxel_30min_R1 1 SVVSFDK 7 0 Q15424-2;Q15424;Q15424-3;Q15424-4 Q15424-2 SAFB Scaffold attachment factor B1 1 S(0.004)VVS(0.996)FDK 101.46 0.0096121 25696000 4517.5 4109.1 7629.7 5856.9 4215.2 3771.5 4096.7 5247.8 3157.7 6959.1 TRUE FALSE 4580.758938 4557.745434 5703.487872 5481.264649 4789.381604 4440.322571 4874.027439 4801.966634 3461.011194 5540.8316 0.826727695 0.822574257 1.029355931 0.989249456 0.864379564 0.801381975 0.879656303 0.866650889 0.624637499 1 12.43588681 -6.991982585 24.45317677 0.82939159 0.919330097 0.119504014 0.105196056 302.2335254 921804.6848 0.032991249 0.037338902 1.02E-07 6.991982585 0.089938507 SVVSDLEADDVKGSVPLS(ph)SSPPATHFPDETEITNPVPK ddPTM_K562_Paclitaxel_30min_R1 1 SVVSDLEADDVKGSVPLSSSPPATHFPDETEITNPVPK 38 1 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 S(0.002)VVS(0.002)DLEADDVKGS(0.048)VPLS(0.296)S(0.296)S(0.296)PPAT(0.048)HFPDET(0.009)EIT(0.003)NPVPK 45.408 0.0057425 234170000 1700.2 1023.6 2998 2180.3 1043.4 958.68 943.75 1901.5 1682 2390.4 TRUE FALSE 1724.008046 1135.36011 2241.117821 2040.465317 1185.528745 1128.688437 1122.821636 1739.955706 1843.563615 1903.235168 0.90583028 0.596542208 1.17753069 1.072103622 0.62290187 0.593036771 0.589954229 0.914209518 0.968647305 1 10.89423812 -6.762670561 24.99999821 0.758172493 0.930720936 0.123122336 0.198542757 70.98517962 1441413.748 0.06467014 0.077480491 1.73E-07 6.762670561 0.172548444 SVYATMGDHENRS(ph)PVKEPVEQPR ddPTM_K562_Paclitaxel_30min_R1 1 SVYATMGDHENRSPVKEPVEQPR 23 2 Q96T58 Q96T58 SPEN Msx2-interacting protein 1 SVY(0.002)AT(0.011)MGDHENRS(0.986)PVKEPVEQPR 53.188 0.015333 95634000 2285.2 1826.5 4036.5 2470.9 2084.5 1592.3 1951.7 2470.8 2087.4 3391.6 TRUE FALSE 2317.19985 2025.923447 3017.435652 2312.427533 2368.444191 1874.672048 2322.024886 2260.890118 2287.904097 2700.390058 0.858098201 0.750233634 1.117407333 0.856330931 0.877074845 0.694222689 0.859884993 0.837245757 0.847249489 1 11.3989521 SWDSSS(ph)PVDRPEPEAASPTTR ddPTM_K562_Paclitaxel_30min_R1 2 SWDSSSPVDRPEPEAASPTTR 21 1 C9J0I9;Q86WB0-2;Q86WB0 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 S(0.03)WDS(0.078)S(0.242)S(0.649)PVDRPEPEAASPTTR;SWDS(0.074)S(0.278)S(0.647)PVDRPEPEAASPTTR 82.216 0.0013211 1017350000 999.78 792.33 1272.13 950.6 1034.3 750.62 656.29 1229.76 833.12 1338.78 TRUE FALSE 1013.780005 878.8392689 950.965048 889.6327707 1175.189171 883.7319178 780.8176014 1125.284212 913.1448985 1065.935901 0.951070326 0.824476658 0.892140932 0.834602503 1.102495159 0.82906666 0.732518344 1.055677186 0.856660234 1 10.05790497 -9.464915427 0.892784999 0.998972718 0.89239208 0.071758502 0.106517425 4.510377092 5.792739177 0.105430905 0.034487869 3.43E-10 9.464915427 -0.106580637 SWEDS(ph)PER ddPTM_K562_Paclitaxel_30min_R1 1 SWEDSPER 8 0 Q9UDY2-7;Q9UDY2-4;A0A3B3IU51;A0A1B0GTW1;A0A3B3ITE1;A0A2R8YDH4;Q9UDY2-2;Q9UDY2-6;Q9UDY2-3;Q9UDY2;Q9UDY2-5;A0A3B3ISF1;A0A3B3ISZ5;A0A3B3IRI3;A0A3B3IRV6;B1AN86;A0A3B3IU26 Q9UDY2-7 TJP2 Tight junction protein ZO-2 1 S(0.007)WEDS(0.993)PER 94.409 0.015355 11924000 1396.8 1331 1720.4 1849.1 1190.6 1538.6 1106.9 1646.2 1215.1 1835.5 TRUE FALSE 1416.359509 1476.323081 1286.063742 1730.507002 1352.779877 1811.449107 1316.928497 1506.345035 1331.815784 1461.424092 0.969163925 1.010194843 0.880007213 1.184123767 0.925658667 1.239509542 0.901126855 1.030737787 0.911313691 1 10.51315918 SWEEPNWMGS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 SWEEPNWMGSPR 12 0 B0QY95;Q9NQG6;Q9NQG6-2 B0QY95 MIEF1 Mitochondrial dynamics protein MID51 1 SWEEPNWMGS(1)PR;SWEEPNWMGS(1)PR 111.07 0.0056278 17519100 1388.54 1139.19 1537.96 1133.86 1056.38 1097.68 1070.75 1598.56 1304.13 1479.23 TRUE FALSE 1407.983844 1263.570617 1149.682977 1061.139295 1200.276841 1292.338136 1273.919223 1462.75235 1429.397514 1177.762114 1.19547388 1.072857245 0.976158906 0.900979308 1.019116532 1.097282822 1.081643914 1.24197606 1.213655539 1 10.20183246 -7.778072973 2.010859745 1.166301308 1.027986082 0.194744659 0.094425487 0.455038307 3.763688173 0.050390832 0.031771994 1.67E-08 7.778072973 -0.138315226 SWLSPRVS(ph)PPASPGP ddPTM_K562_Paclitaxel_30min_R1 2 SWLSPRVSPPASPGP 15 1 A0A0C4DGU2;Q9Y4U1 A0A0C4DGU2 MMACHC Methylmalonic aciduria and homocystinuria type C protein 1 SWLSPRVS(1)PPASPGP;SWLS(0.006)PRVS(0.994)PPASPGP 178.68 4.11E-06 142311000 2621 2468.8 3245.2 2941.3 2329.7 2782.1 2330.13 2512.9 3567.5 3370.6 TRUE FALSE 2657.702086 2738.351933 2425.909124 2752.658183 2647.044582 3275.466372 2772.260003 2299.41346 3910.174315 2683.66987 0.990323779 1.020375853 0.903952141 1.025706706 0.986352536 1.220517624 1.033010816 0.856816811 1.457025083 1 11.38999149 -7.074970805 24.99678696 1.099934083 0.984840679 0.151280735 0.150043902 283.9248031 94664.50063 0.047708837 0.047708852 8.41E-08 7.074970805 -0.115093404 SWQEDSES(ph)GEAQLSPQAGR ddPTM_K562_Paclitaxel_30min_R1 1 SWQEDSESGEAQLSPQAGR 19 0 Q9NYF5-3;Q9NYF5-2;Q9NYF5 Q9NYF5-3 FAM13B Protein FAM13B 1 SWQEDS(0.249)ES(0.624)GEAQLS(0.127)PQAGR 84.581 0.0043562 8831700 570.5 572.08 722.81 567.53 496.01 522.7 608.38 576.42 429.67 660.14 TRUE FALSE 578.4887601 634.5416291 540.3276759 531.131166 563.5749595 615.3935059 723.816929 527.4495231 470.9417233 525.6031056 1.100618992 1.20726385 1.028014618 1.010517556 1.072244348 1.170833086 1.377116918 1.00351295 0.896002551 1 9.03782999 -8.507732572 24.94625226 0.948586705 1.134618982 0.38335823 0.101298892 718.8996206 1184061.523 0.062273804 0.028307679 3.11E-09 8.507732572 0.186032277 SWS(ph)ASDPFYTNDR ddPTM_K562_Paclitaxel_30min_R1 3 SWSASDPFYTNDR 13 0 Q9Y2G3 Q9Y2G3 ATP11B Probable phospholipid-transporting ATPase IF 1 S(0.04)WS(0.94)AS(0.019)DPFYTNDR;SWS(0.99)AS(0.01)DPFYTNDR;S(0.012)WS(0.89)AS(0.098)DPFYTNDR 137.93 5.70E-05 152998000 7124.1 7443.4 8810 8714.5 8205.2 8095.5 7931.6 9561.7 8197.2 9948 TRUE FALSE 7223.85938 8256.095584 6585.806539 8155.590975 9322.887155 9531.123259 9436.579694 8749.373903 8984.577686 7920.592139 0.912035269 1.042358379 0.831479064 1.029669352 1.177044215 1.203334686 1.19139826 1.104636339 1.134331566 1 12.95139257 -6.562869819 4.640580606 1.145295572 0.93785487 0.618417636 0.072541029 0.122852252 6.04704662 0.021027593 0.028158858 2.74E-07 6.562869819 -0.207440702 SWS(ph)PPPEVSR ddPTM_K562_Paclitaxel_30min_R1 1 SWSPPPEVSR 10 0 Q9NR19;Q9NR19-2;F8WCJ4;C9JXD9;C9IYL0;B4DEH9;C9JY31 Q9NR19 ACSS2 "Acetyl-coenzyme A synthetase, cytoplasmic" 1 S(0.026)WS(0.972)PPPEVS(0.002)R 111.86 0.0048787 482890000 2519.1 2269.7 2990.9 2729.9 2151.2 2416.9 2441.1 3078.3 2306.5 3112.8 TRUE FALSE 2554.375172 2517.513522 2235.810304 2554.816433 2444.22986 2845.50328 2904.285982 2816.779201 2528.049631 2478.409651 1.030650914 1.015777807 0.902114912 1.030828956 0.986208982 1.148116607 1.171834519 1.136526885 1.020028965 1 11.27519895 -7.250827552 24.66976924 1.108617645 0.991414791 0.400863885 0.061375314 549.9732041 1278547.836 0.020450176 0.020233266 5.61E-08 7.250827552 -0.117202854 SWSYNGYYS(ph)DLSTAR ddPTM_K562_Paclitaxel_30min_R1 1 SWSYNGYYSDLSTAR 15 0 A0A087WYW3;P30414 A0A087WYW3 NKTR NK-tumor recognition protein;Putative peptidyl-prolyl cis-trans isomerase 1 SWSYNGYY(0.001)S(0.996)DLS(0.001)TAR 98.552 0.0059454 11235000 626.12 590.64 1117.4 873.83 688.56 702.89 692.87 856.83 805.64 819.71 TRUE FALSE 634.8876117 655.1280726 835.2985502 817.7864549 782.3535294 827.5376724 824.3384655 784.0369433 883.0253217 652.6526521 0.972780253 1.003792861 1.279851614 1.253019431 1.198728798 1.267960331 1.263058478 1.20130814 1.352978983 1 9.35017157 -5.752102578 22.2640541 1.236956878 0.988285762 0.541672225 0.087500443 32.86397458 78358.44433 0.020337859 0.051917432 1.77E-06 5.752102578 -0.248671116 SY(ph)LQAHQRVHTGERPY(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 SYLQAHQRVHTGERPYK 17 2 Q02386 Q02386 ZNF45 Zinc finger protein 45 2 S(0.209)Y(0.79)LQAHQRVHT(0.001)GERPY(1)K 67.846 0.020027 11123000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 SYCAEIAHNVSSK ddPTM_K562_Paclitaxel_30min_R1 1 SYCAEIAHNVSSK 13 0 D3YTB1;F8W727;P62910 D3YTB1 RPL32 60S ribosomal protein L32 0 103.14 0.014566 10056000 1937 1675.5 2456.1 1665 1393.6 1367 1362.8 1813.1 1758.4 2085.5 FALSE TRUE 1964.123976 1858.436756 1836.027178 1558.214352 1583.431914 1609.418256 1621.384186 1659.065838 1927.302177 1660.473955 1.182869487 1.11922066 1.105724768 0.938415413 0.953602379 0.969252334 0.976458667 0.999151979 1.160694012 1 10.69737938 -6.085456553 4.376837018 0.995760439 1.144141084 0.528052489 0.059758463 0.177352824 6.039231165 0.017116072 0.031669497 8.21E-07 6.085456553 0.148380645 SYELPDGQVITIGNER ddPTM_K562_Paclitaxel_30min_R1 3 SYELPDGQVITIGNER 16 0 P60709;P63261;A0A2R8Y793;P63267;P68133;A5A3E0;Q6S8J3;P62736;P68032;P63267-2;Q9BYX7;A0A2R8YEA7;Q562R1 P60709 ACTB;ACTG1;ACTG2;ACTA1;POTEF;POTEE;ACTA2;ACTC1;POTEKP;ACTBL2 "Actin, cytoplasmic 1;Actin, cytoplasmic 1, N-terminally processed;Actin, cytoplasmic 2;Actin, cytoplasmic 2, N-terminally processed;Actin, gamma-enteric smooth muscle;Actin, alpha skeletal muscle;POTE ankyrin domain family member F;POTE ankyrin domain family member E;Actin, aortic smooth muscle;Actin, alpha cardiac muscle 1;Putative beta-actin-like protein 3;Putative beta-actin-like protein 3, N-terminally processed;Beta-actin-like protein 2" 0 ;; 179.5 3.92E-09 123857000 4477.75 4157.55 4940.39 4093.58 4350.56 3708.71 4015.42 4245.22 4303.96 5174.63 FALSE TRUE 4540.452315 4611.485369 3693.127443 3831.036101 4943.179928 4366.397646 4777.324983 3884.562063 4717.374589 4120.037566 1.102041485 1.11928236 0.896381983 0.929854653 1.199790014 1.059795591 1.159534326 0.942846273 1.144983392 1 12.00844178 SYES(ph)SEDCSEAAGSPAR ddPTM_K562_Paclitaxel_30min_R1 2 SYESSEDCSEAAGSPAR 17 0 Q6P6C2-3;Q6P6C2;K7ER58 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 SYES(0.5)S(0.5)EDCSEAAGSPAR;SYES(0.985)S(0.015)EDCSEAAGSPAR 257.46 1.54E-78 16896700 2440.6 2327.63 3170.9 2650.9 2188.1 1772.22 1987.54 2539.6 2777.9 2450.51 TRUE FALSE 2474.77593 2581.768515 2370.367078 2480.883139 2486.156265 2086.498334 2364.665339 2323.845128 3044.729707 1951.094717 1.268403788 1.323240995 1.214890829 1.271533933 1.274236583 1.069398792 1.211968501 1.191046805 1.560523782 1 10.9300681 SYESSEDCSEAAGS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 1 SYESSEDCSEAAGSPAR 17 0 Q6P6C2-3;Q6P6C2;K7ER58 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 SYESSEDCSEAAGS(1)PAR 134.08 1.72E-07 37275000 895.22 682.01 1350.4 888.74 1037.7 677.51 659.73 1027 921.52 1337.1 TRUE FALSE 907.755842 756.4741582 1009.474818 831.7401943 1179.052308 797.6568858 784.9103235 939.7499397 1010.036113 1064.598286 0.852674529 0.710572399 0.948221345 0.781271401 1.107509118 0.749256218 0.737283099 0.882727271 0.948748581 1 10.05609343 -15 0.178013521 1.606683338 0.823182982 0.14137561 0.114069149 283.6195564 2.719310608 60.40751215 0.371771509 1.00E-15 15 -0.783500356 SYGEEDFEYHR ddPTM_K562_Paclitaxel_30min_R1 2 SYGEEDFEYHR 11 0 P04920-2;P04920-3;P04920;C9J9M9;C9J722;C9J035;C9JVC2 P04920-2 SLC4A2 Anion exchange protein 2 0 ; 187.42 0.0044834 13279700 4150.1 3733.1 4546.7 5174.9 4052.9 3881.3 3717.7 4285.7 3334.9 4891.6 FALSE TRUE 4208.214204 4140.692483 3398.829352 4843.005076 4604.973596 4569.594059 4423.114167 3921.603034 3655.232046 3894.689235 1.080500638 1.063163768 0.872683068 1.243489476 1.182372538 1.173288492 1.13567833 1.006910384 0.938516997 1 11.9272925 -8.403209325 4.38578914 0.970118928 1.106911446 0.275115568 0.094412028 0.334418589 10.31528391 0.061086374 0.0272151 3.95E-09 8.403209325 0.136792518 SYGS(ph)RSPFEHSVEHK ddPTM_K562_Paclitaxel_30min_R1 1 SYGSRSPFEHSVEHK 15 1 O14646-2 O14646-2 CHD1 Chromodomain-helicase-DNA-binding protein 1 1 S(0.058)Y(0.289)GS(0.365)RS(0.289)PFEHSVEHK 71.279 0.025811 88823000 2840.8 2389.1 4698 3112.7 2576.9 2346.8 2077.8 3070.2 2596 3426.1 TRUE FALSE 2880.579965 2649.950017 3511.931796 2913.065354 2927.917407 2762.972029 2472.051703 2809.367346 2845.357399 2727.858939 1.055985675 0.971439534 1.287431599 1.067894425 1.073339008 1.012872033 0.90622417 1.029879993 1.04307351 1 11.41355333 -7.192626791 2.782800175 0.993211548 1.098189018 0.250075053 0.081319395 0.410672299 6.252443719 0.030602675 0.029718244 6.42E-08 7.192626791 0.10497747 SYNPFDDDGEDEGARPAPWR ddPTM_K562_Paclitaxel_30min_R1 1 SYNPFDDDGEDEGARPAPWR 20 1 O95721 O95721 SNAP29 Synaptosomal-associated protein 29 0 152.89 2.32E-11 91066000 944.84 816.13 1119.5 920.38 843.47 788.31 1078 1207.7 932.25 1325.9 FALSE TRUE 958.0706751 905.2378334 836.8683792 861.3509463 958.3648941 928.1057101 1282.544872 1105.098347 1021.796778 1055.680852 0.907538176 0.857491951 0.792728576 0.815919835 0.907816877 0.879153684 1.2148983 1.046811017 0.967903108 1 10.04395804 -7.622732417 8.796366782 1.060965705 0.854875412 0.664851695 0.068750468 0.163043838 12.95582672 0.026971918 0.020858396 2.38E-08 7.622732417 -0.206090293 SYQNS(ph)PS(ph)SDDGIRPLPEYSTEK ddPTM_K562_Paclitaxel_30min_R1 1 SYQNSPSSDDGIRPLPEYSTEK 22 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 2 S(0.078)Y(0.066)QNS(0.796)PS(0.526)S(0.526)DDGIRPLPEY(0.005)S(0.002)T(0.002)EK 71.853 0.0041219 13381000 3630.5 3052.9 6542.7 4245.2 3670.5 2777.8 2500.8 3800.8 3379.5 4619.6 TRUE FALSE 3681.338201 3386.225946 4890.914466 3972.931873 4170.484242 3270.403828 2975.313745 3477.898316 3704.116075 3678.122984 1.000874146 0.920639674 1.329731085 1.080151993 1.133862098 0.889150211 0.808921767 0.945563357 1.007066944 1 11.844754 -7.263003323 24.97907455 0.919161993 1.095905544 0.34613192 0.11141143 162.8585009 2601135.724 0.039984008 0.037132046 5.46E-08 7.263003323 0.17674355 SYQNSPS(ph)S(ph)DDGIRPLPEYSTEK ddPTM_K562_Paclitaxel_30min_R1 1 SYQNSPSSDDGIRPLPEYSTEK 22 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 2 S(0.002)Y(0.002)QNS(0.14)PS(0.926)S(0.926)DDGIRPLPEY(0.004)STEK 80.109 0.0015844 18635000 2656.6 2046 3921.9 2708.1 2040.7 1793.8 1447.5 2749 2069.8 3567.4 TRUE FALSE 2693.800596 2269.389199 2931.76784 2534.414587 2318.677889 2111.905244 1722.155569 2515.455291 2268.613538 2840.361922 0.948400475 0.798978884 1.032181081 0.892285792 0.816331845 0.743533853 0.606315539 0.885610834 0.798705799 1 11.47185906 -6.77237179 3.599192653 0.787036305 0.920165311 0.187639338 0.108705614 0.338645736 9.339382229 0.033985898 0.041660473 1.69E-07 6.77237179 0.133129006 SYQNSPS(ph)SDDGIRPLPEYSTEK ddPTM_K562_Paclitaxel_30min_R1 1 SYQNSPSSDDGIRPLPEYSTEK 22 1 Q15648 Q15648 MED1 Mediator of RNA polymerase II transcription subunit 1 1 S(0.001)Y(0.001)QNS(0.05)PS(0.468)S(0.468)DDGIRPLPEY(0.007)S(0.003)T(0.002)EK 57.227 0.017722 19712000 508.49 448.49 1127.2 569.33 437.68 644.76 463.95 662.4 505.67 860.43 TRUE FALSE 515.6104288 497.4576549 842.624419 532.815722 497.299426 759.0991331 551.9820905 606.1249854 554.2418629 685.0738937 0.752634765 0.726137223 1.229975958 0.777749272 0.725906257 1.108054387 0.805726354 0.884758551 0.809024936 1 9.420115799 SYS(ph)PDGK ddPTM_K562_Paclitaxel_30min_R1 1 SYSPDGK 7 0 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 1 S(0.41)YS(0.59)PDGK 106.68 0.0065059 113620000 3281.9 2530.9 6021.6 3602.9 2981.5 2582.5 2387.9 3719.2 2042.5 4645.1 TRUE FALSE 3327.856726 2807.232221 4501.372606 3371.82612 3387.630777 3040.470115 2840.991559 3403.230745 2238.691251 3698.42607 0.899803501 0.759034294 1.217104931 0.911692178 0.915965525 0.822098389 0.768162322 0.920183527 0.60530918 1 11.85269572 -7.149262613 2.62954817 0.813384068 0.95084876 0.146541515 0.142597627 0.542696973 7.311872791 0.050997599 0.050757396 7.09E-08 7.149262613 0.137464692 SYS(ph)PDGKESPSDK ddPTM_K562_Paclitaxel_30min_R1 2 SYSPDGKESPSDK 13 1 D6REM6;A0A0R4J2E8;A8MXP9;P43243;B3KM87;P43243-2 D6REM6 MATR3 Matrin-3 1 S(0.403)Y(0.002)S(0.595)PDGKESPSDK;S(0.314)YS(0.685)PDGKESPSDK 135.47 0.00049738 21229500 4116 2902.7 8911.5 3850.3 2788.26 2489.58 2190.06 4273 3528.7 5733.9 TRUE FALSE 4173.636699 3219.626602 6661.681609 3603.358991 3168.068218 2931.072058 2605.612452 3909.981979 3867.647402 4565.328033 0.914203025 0.70523445 1.459190131 0.789288079 0.693940982 0.642028795 0.570739372 0.856451486 0.847178423 1 12.15650281 -6.494508134 24.88079018 0.744702908 1.01579963 0.234267354 0.208546248 929.3156425 815002.1232 0.058776301 0.086961904 3.20E-07 6.494508134 0.271096722 SYS(ph)PDHR ddPTM_K562_Paclitaxel_30min_R1 2 SYSPDHR 7 0 A0A024RAC6;Q14241 A0A024RAC6 TCEB3 Transcription elongation factor B polypeptide 3 1 S(0.117)Y(0.001)S(0.882)PDHR;S(0.045)YS(0.955)PDHR 98.458 0.011524 2180800 2257.8 2518.9 2928.3 2655.2 2576.5 2770.4 2185.8 2809 2686.6 2717.3 TRUE FALSE 2289.416166 2793.92202 2189.014448 2484.907356 2927.462921 3261.691542 2600.544139 2570.357917 2944.659934 2163.512768 1.05819397 1.291382266 1.011787164 1.148552203 1.353106376 1.507590613 1.202000828 1.188048416 1.361055029 1 11.07915992 -5.249979404 23.46892859 1.237551695 1.058193716 0.103246199 0.14948595 1762.171298 3608594.753 0.03841444 0.55007307 5.62E-06 5.249979404 -0.179357979 SYS(ph)SPDITQAIQEEEK ddPTM_K562_Paclitaxel_30min_R1 1 SYSSPDITQAIQEEEK 16 0 P40818-2;P40818 P40818-2 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 S(0.007)YS(0.939)S(0.054)PDITQAIQEEEK 105.89 0.0015209 11253000 442.21 231.35 737.89 386.09 400.44 322.07 233.85 594.24 416.62 674.94 TRUE FALSE 448.4023043 256.6095754 551.6005434 361.3279155 454.9867075 379.1845924 278.2218167 543.7556029 456.6382125 537.3868575 0.834412487 0.477513679 1.026449634 0.672379517 0.846665119 0.705608236 0.517730966 1.011851323 0.849738333 1 9.069817229 -8.290137665 24.99607583 0.94809615 0.729649777 0.310962154 0.155412703 934.07131 813566.5488 0.081496959 0.039161242 5.13E-09 8.290137665 -0.218446373 SYS(ph)SPDITQAIQEEEKR ddPTM_K562_Paclitaxel_30min_R1 4 SYSSPDITQAIQEEEKR 17 1 P40818-2;P40818 P40818-2 USP8 Ubiquitin carboxyl-terminal hydrolase 8 1 S(0.023)YS(0.971)S(0.005)PDITQAIQEEEKR;S(0.038)Y(0.001)S(0.821)S(0.141)PDITQAIQEEEKR;S(0.037)YS(0.853)S(0.11)PDITQAIQEEEKR;S(0.194)Y(0.001)S(0.767)S(0.038)PDITQAIQEEEKR 169.77 1.11E-08 367249000 7286.8 5675.6 12401.1 7826.3 5720.7 5515.33 4906.4 7619.3 5939.8 10265.4 TRUE FALSE 7388.837682 6295.281202 9270.28893 7324.356147 6499.956192 6493.396336 5837.363787 6971.992907 6510.34433 8173.305845 0.904020701 0.770224597 1.134215348 0.896131417 0.795266483 0.794463888 0.714198624 0.853019946 0.796537466 1 12.99670401 -6.644079709 5.223287374 0.811587964 0.933865479 0.171878741 0.107512146 0.328077746 13.66747343 0.031726757 0.041143233 2.27E-07 6.644079709 0.122277515 SYSEDDIHR ddPTM_K562_Paclitaxel_30min_R1 2 SYSEDDIHR 9 0 Q9Y5A9;A0A024R7W5;A0A087X0Q1;A0A087WY31;Q9Y5A9-2;Q9BYJ9;Q7Z739 Q9Y5A9 YTHDF2;YTHDF3;YTHDF1 YTH domain-containing family protein 2;YTH domain-containing family protein 1;YTH domain-containing family protein 3 0 ; 185.81 6.01E-74 10505000 6375.4 6056 6758.8 6763.3 5998.8 5957.8 5325.4 6942 6249.3 7172.4 FALSE TRUE 6464.67527 6717.21456 5052.457348 6329.532209 6815.938121 7014.332178 6335.86685 6352.233769 6849.573188 5710.660943 1.132036262 1.17625869 0.884741258 1.108371215 1.193546279 1.228287277 1.109480481 1.11234651 1.199436152 1 12.47944202 T(ph)AS(ph)PPPPPK ddPTM_K562_Paclitaxel_30min_R1 1 TASPPPPPK 9 0 A9Z1X7;Q8IYB3-2;Q8IYB3;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 2 T(1)AS(1)PPPPPK 93.442 0.029792 84453000 8088.1 6783.3 17206 10180 7216.7 6379.5 6801.2 10981 6437.4 11698 TRUE FALSE 8201.358354 7523.923634 12862.1325 9527.100364 8199.73672 7510.814752 8091.692195 10048.09551 7055.741033 9313.941179 0.880546505 0.807813093 1.380954877 1.022886035 0.880372397 0.806405646 0.868772096 1.078823166 0.757546231 1 13.18517606 -6.741557548 9.06494447 0.896465067 1.033482885 0.12056721 0.163574707 0.502548825 201.9581168 0.050443431 0.063731375 1.81E-07 6.741557548 0.137017818 T(ph)ASELLLDR ddPTM_K562_Paclitaxel_30min_R1 1 TASELLLDR 9 0 Q92508 Q92508 PIEZO1 Piezo-type mechanosensitive ion channel component 1 1 T(0.695)AS(0.305)ELLLDR 133.42 0.0017727 12192000 2112.4 1996.9 2985.7 2315.4 1841.5 1906.2 1930.3 2202.8 2069.4 2553.8 TRUE FALSE 2141.980117 2214.928295 2231.923108 2166.900607 2092.343477 2244.237806 2296.564348 2015.658391 2268.175116 2033.334158 1.053432417 1.089308556 1.097666657 1.065688391 1.029020965 1.103723063 1.129457418 0.991307003 1.115495506 1 10.98963161 -14.48770088 0.451544623 9.54E-07 1.07536639 0.238529578 0.039877501 1205.521474 11.3677128 1188.972864 0.020988681 3.25E-15 14.48770088 1.075365435 T(ph)ASELLLDRR ddPTM_K562_Paclitaxel_30min_R1 4 TASELLLDRR 10 1 Q92508 Q92508 PIEZO1 Piezo-type mechanosensitive ion channel component 1 1 T(0.907)AS(0.093)ELLLDRR;T(0.992)AS(0.008)ELLLDRR;T(0.983)AS(0.017)ELLLDRR;T(0.996)AS(0.004)ELLLDRR 147.58 0.0004292 183947000 15381.6 14254.3 21469.7 15343.2 12798.9 12879.4 12988.5 16235 16235.6 19702.3 TRUE FALSE 15596.98986 15810.63268 16049.4087 14359.15583 14542.32687 15163.38075 15453.00007 14855.73541 17795.10192 15686.96045 0.994264626 1.00788376 1.023105066 0.915356157 0.9270328 0.966623254 0.985085678 0.947011721 1.134388143 1 13.93727822 -8.744587955 24.99998468 1.067194117 0.970805855 0.433011046 0.044123367 194.6846255 288827.6384 0.030331101 0.011394909 1.80E-09 8.744587955 -0.096388262 T(ph)ASIS(ph)SSPSEGTPTVGSYGCTPQSLPK ddPTM_K562_Paclitaxel_30min_R1 1 TASISSSPSEGTPTVGSYGCTPQSLPK 27 0 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 2 T(0.681)AS(0.265)IS(0.633)S(0.196)S(0.077)PS(0.029)EGT(0.041)PT(0.064)VGS(0.014)Y(0.001)GCTPQSLPK 59.838 0.0057594 16343000 851.25 788.78 1631.6 1234.4 784.31 840.39 572.17 1111.7 945.96 1288.3 TRUE FALSE 863.1701263 874.9016679 1219.682401 1155.231109 891.1463005 989.4213668 680.7362706 1017.254146 1036.823685 1025.743753 0.841506589 0.852943696 1.189071244 1.126237528 0.868780627 0.96458922 0.663651393 0.991723462 1.010801852 1 10.00245465 -6.80469851 24.9999707 0.905930158 1.005093114 0.082360709 0.137536064 349.1009572 201747.6217 0.045544862 0.051643293 1.57E-07 6.80469851 0.099162955 T(ph)ASISSSPSEGTPTVGSYGCTPQSLPK ddPTM_K562_Paclitaxel_30min_R1 1 TASISSSPSEGTPTVGSYGCTPQSLPK 27 0 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 1 T(0.753)AS(0.207)IS(0.026)S(0.009)S(0.003)PSEGTPTVGSYGCTPQSLPK 73.276 0.00020129 12396000 1861.4 1263.3 2872.8 1524.7 1295 1330.5 1253.3 1883.7 1593.7 2561.5 TRUE FALSE 1887.465343 1401.231366 2147.52611 1426.912566 1471.400925 1566.445494 1491.107132 1723.667927 1746.782006 2039.464894 0.925470867 0.687058341 1.052985083 0.699650467 0.721464208 0.768066907 0.731126648 0.845156949 0.856490352 1 10.99397496 -9.147986966 1.650307669 0.99896185 0.796800626 0.234049969 0.107711075 0.858020904 4.702820511 0.100277898 0.02880045 7.11E-10 9.147986966 -0.202161224 T(ph)ASPEDSDMPDHDLEPPR ddPTM_K562_Paclitaxel_30min_R1 1 TASPEDSDMPDHDLEPPR 18 0 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 T(0.457)AS(0.457)PEDS(0.086)DMPDHDLEPPR 104.35 0.00099878 6973400 796 809.7 1114.8 1164.4 568.2 448.5 802.54 802.32 766.12 758.41 TRUE FALSE 807.1464559 898.1057842 833.3549523 1089.720596 645.5984597 528.0351777 954.8177755 734.1579081 839.7092491 603.8456257 1.336676829 1.487310243 1.380079472 1.804634412 1.069144881 0.874453925 1.581228272 1.215803968 1.390602521 1 9.238035959 -6.786406724 24.99981572 1.203259348 1.492392637 0.328147093 0.219068988 299.8867782 300275.1177 0.069117138 0.07840308 1.64E-07 6.786406724 0.28913329 T(ph)ASPPPPPKR ddPTM_K562_Paclitaxel_30min_R1 1 TASPPPPPKR 10 1 A9Z1X7;Q8IYB3-2;Q8IYB3;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 T(0.992)AS(0.008)PPPPPKR 101.71 0.010305 77227000 2355.1 1655.6 4243.4 2798.2 1728.7 1705.7 1645.3 2365.9 2125.4 2879.4 TRUE FALSE 2388.078666 1836.364007 3172.101188 2618.735976 1964.178207 2008.181946 1957.487086 2164.902028 2329.554167 2292.576699 1.041657043 0.801004393 1.383640159 1.142267553 0.856755723 0.875949732 0.85383712 0.944309531 1.016129217 1 11.16275429 -6.759685748 24.99991025 0.915752012 1.092168012 0.249347263 0.142014332 69.25564388 987301.9986 0.044865079 0.05495359 1.74E-07 6.759685748 0.176416 T(ph)ATCHSSSSPPIDAASAEPYGFR ddPTM_K562_Paclitaxel_30min_R1 1 TATCHSSSSPPIDAASAEPYGFR 23 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 T(0.193)AT(0.193)CHS(0.193)S(0.193)S(0.193)S(0.036)PPIDAASAEPYGFR 59.814 0.015304 18332000 273.75 193.19 381.66 309.39 410.98 280.57 241.59 527.88 324.07 270.45 TRUE FALSE 277.5833446 214.2831375 285.3052127 289.5471102 466.9624339 330.3251501 287.4304413 483.0332991 355.1983715 215.3321415 1.289093874 0.995128437 1.324954141 1.344653465 2.168568197 1.534026215 1.334823679 2.243201111 1.64953717 1 7.750419869 -6.539598386 24.81579089 1.700715636 1.207688683 0.253438278 0.351286249 265.7629738 394451.1472 0.100760399 0.130114671 2.89E-07 6.539598386 -0.493026953 T(ph)CKRKS(ph)APT(ph)DR ddPTM_K562_Paclitaxel_30min_R1 1 TCKRKSAPTDR 11 3 P23409 P23409 MYF6 Myogenic factor 6 3 T(1)CKRKS(1)APT(1)DR 66.056 0.026099 45237000 1145.6 1635.1 1639.7 1588.4 1513.7 1166.8 1352.1 1249.9 617.66 1565.8 TRUE FALSE 1161.641934 1813.625748 1225.737455 1486.527133 1719.891567 1373.715597 1608.653917 1143.713193 676.9890028 1246.689101 0.931781576 1.454753833 0.98319417 1.192379987 1.379567341 1.101891078 1.290340884 0.917400491 0.543029535 1 10.28388602 -8.447736559 4.617760279 0.757355864 1.194781215 0.468652008 0.184414455 0.164214152 6.431976701 0.103022033 0.045314668 3.57E-09 8.447736559 0.43742535 T(ph)CLSPGSSEMSLQPDLVR ddPTM_K562_Paclitaxel_30min_R1 1 TCLSPGSSEMSLQPDLVR 18 0 Q6UB98-2;Q6UB98 Q6UB98-2 ANKRD12 Ankyrin repeat domain-containing protein 12 1 T(0.522)CLS(0.395)PGS(0.082)S(0.001)EMSLQPDLVR 98.508 0.0026976 20900000 580.51 443.41 640.75 587.63 499.33 424.51 478.88 558.71 530.97 653.39 TRUE FALSE 588.638931 491.8230033 478.9847378 549.9420419 567.3471997 499.7908881 569.7449801 511.2440981 581.9720409 520.2287593 1.131500173 0.945397567 0.920719451 1.057115802 1.090572541 0.960713684 1.095181629 0.982729403 1.118684868 1 9.023002346 T(ph)CNSPQNSTDSVSDIVPDSPFPGALGSDTR ddPTM_K562_Paclitaxel_30min_R1 1 TCNSPQNSTDSVSDIVPDSPFPGALGSDTR 30 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 T(0.547)CNS(0.453)PQNSTDSVSDIVPDSPFPGALGSDTR 151.4 2.19E-32 51403000 1481.8 1384.4 2424.2 1551.4 1554.1 1184 1238 1657 1440.4 1618.6 TRUE FALSE 1502.549772 1535.553474 1812.180728 1451.900148 1765.794731 1393.965776 1472.904037 1516.227507 1578.756856 1288.728432 1.165916523 1.191526032 1.406177348 1.126614508 1.370183731 1.08165983 1.142912658 1.17652988 1.22505007 1 10.33173257 -7.283893584 24.94033967 1.137368744 1.250309593 0.291890132 0.097861511 1134.903812 1260556.081 0.033287386 0.029376854 5.20E-08 7.283893584 0.11294085 T(ph)ELPVT(ph)E ddPTM_K562_Paclitaxel_30min_R1 1 TELPVTE 7 0 M0R2K3 M0R2K3 BABAM1 2 T(1)ELPVT(1)E 40.058 0.030466 2421000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 T(ph)ESPATAAETASEELDNR ddPTM_K562_Paclitaxel_30min_R1 1 TESPATAAETASEELDNR 18 0 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4 1 T(0.498)ES(0.498)PAT(0.004)AAETASEELDNR 94.639 0.0039649 265940000 1102.7 1161.7 1547.5 1374.2 1208.8 1002.4 1033.9 1278.7 923.15 1422.6 TRUE FALSE 1118.141202 1288.538335 1156.814486 1286.064963 1373.459025 1180.161566 1230.077128 1170.066454 1011.822682 1132.673339 0.987170055 1.137608073 1.021313424 1.135424414 1.212581755 1.041925792 1.085994598 1.03301315 0.893304934 1 10.14551614 -8.531237634 3.778909681 0.947104676 1.091969391 0.422707775 0.065644443 0.205581986 6.448387043 0.046878725 0.017243486 2.94E-09 8.531237634 0.144864715 T(ph)ESQKLT(ph)T(ph)S(ph)ES(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 TESQKLTTSESR 12 1 Q6UVM3-4;Q6UVM3-3 Q6UVM3-4 5 T(0.752)ES(0.248)QKLT(1)T(1)S(1)ES(1)R 50.806 0.025933 179290000 0 0 0 0 149.96 0 0 0 0 0 TRUE FALSE 0 0 0 0 170.3870908 0 0 0 0 0 0 T(ph)ESSPSEASQHSMQSPQK ddPTM_K562_Paclitaxel_30min_R1 1 TESSPSEASQHSMQSPQK 18 0 Q9UQR0 Q9UQR0 SCML2 Sex comb on midleg-like protein 2 1 T(0.321)ES(0.321)S(0.321)PS(0.036)EAS(0.002)QHSMQSPQK 71.001 0.023324 6907700 1743.4 1555.9 4193.9 2396.7 1680.3 1645.3 1362.6 2206 2352.6 2974.8 TRUE FALSE 1767.812979 1725.778424 3135.098076 2242.986389 1909.185308 1937.070854 1621.146237 2018.586531 2578.577742 2368.534127 0.746374291 0.728627215 1.323644882 0.946993486 0.80606198 0.817835315 0.684451289 0.852251402 1.088680848 1 11.20977874 -8.755650991 24.87812671 1.044340446 0.867544442 0.151805193 0.170956194 251.9286898 1082812.324 0.131858325 0.046782741 1.76E-09 8.755650991 -0.176796004 T(ph)FSDESNVL ddPTM_K562_Paclitaxel_30min_R1 1 TFSDESNVL 9 0 H7C113;Q8NB49 H7C113 ATP11C Phospholipid-transporting ATPase IG 1 T(0.626)FS(0.374)DESNVL 134.25 1.66E-10 0 900.55 858.39 1174 1020.6 777.52 932.62 807.89 839.83 787.31 1130.5 TRUE FALSE 913.1604784 952.1119231 877.6091802 955.143284 883.4313875 1098.007062 961.18291 768.4811994 862.9346433 900.1034795 1.014506109 1.057780516 0.975009207 1.061148308 0.981477583 1.21986759 1.067858232 0.853769835 0.958706041 1 9.813947059 -8.241864402 24.54209016 0.929678451 1.054931772 0.350675704 0.072377408 655.9384937 822383.3387 0.034713172 0.020001694 5.73E-09 8.241864402 0.125253321 T(ph)FSLTEVR ddPTM_K562_Paclitaxel_30min_R1 1 TFSLTEVR 8 0 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 T(0.494)FS(0.494)LT(0.012)EVR 131.12 0.00040459 81436000 3251.4 2235.5 3276.7 2939 2571.4 2070.8 2370.6 2369.6 2724.8 3448.3 TRUE FALSE 3296.929631 2479.57945 2449.456559 2750.505694 2921.668214 2438.027305 2820.408975 2168.287689 2986.529215 2745.534567 1.200833408 0.903131754 0.89216016 1.001810623 1.06415277 0.887997308 1.02727134 0.789750643 1.087776949 1 11.42287136 -7.263814364 24.93540169 0.949713174 0.999076035 0.046442653 0.110719154 795.9506303 8356784.914 0.037112804 0.034255604 5.45E-08 7.263814364 0.049362861 T(ph)FSPRT(ph)ST(ph)IYDMY(ph)RTR ddPTM_K562_Paclitaxel_30min_R1 1 TFSPRTSTIYDMYRTR 16 2 E9PPH6;Q8NEV8-2;Q8NEV8;F5GXG5;A0A087WZJ0 E9PPH6 EXPH5 Exophilin-5 4 T(0.861)FS(0.533)PRT(0.682)S(0.534)T(0.565)IY(0.265)DMY(0.555)RT(0.006)R 79.317 0.028087 0 0 70.358 192.25 212.77 45.561 0 0 186.06 0 54.662 TRUE FALSE 0 78.03992438 143.7141098 199.1238845 51.76717955 0 0 170.2530416 0 43.5218544 0 1.793120387 3.302113657 4.575261953 1.189452524 0 0 3.911897689 0 1 5.443668124 -6.96162186 24.99959971 1.046498465 2.491965541 0.168561089 1.522921293 310.4874795 202250.9731 0.495537546 0.561885848 1.09E-07 6.96162186 1.445467076 T(ph)GIRQS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 TGIRQSR 7 1 H3BMM1;H3BRD5;B2RTY4-5;B2RTY4-2;B2RTY4;B2RTY4-4 H3BMM1 MYO9A Unconventional myosin-IXa 2 T(1)GIRQS(1)R 44.425 0.029975 6038600 363.9 180.74 288.1 265.6 228.9 234.6 0 270.6 247.23 184.16 TRUE FALSE 368.9957227 200.4738044 215.3655918 248.5656048 260.0800553 276.2030161 0 247.610841 270.9775462 146.6280909 2.51654182 1.367226451 1.468788078 1.695211356 1.773739627 1.883697826 0 1.68869989 1.848060249 1 7.19601771 T(ph)GS(ph)FGVT(ph)AVTVGDSNS(ph)NVNR ddPTM_K562_Paclitaxel_30min_R1 1 TGSFGVTAVTVGDSNSNVNR 20 0 A0A1W2PR55;H0YDW7;P16070-11;P16070-10;P16070-16;P16070-9;P16070-17;P16070-6;P16070-4;P16070-3;P16070-7;P16070-5;P16070 A0A1W2PR55 CD44 CD44 antigen 4 T(0.997)GS(0.998)FGVT(0.937)AVT(0.055)VGDS(0.014)NS(1)NVNR 64.26 0.013983 16527000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 T(ph)GS(ph)T(ph)SSSS(ph)S(ph)GKK ddPTM_K562_Paclitaxel_30min_R1 1 TGSTSSSSSGKK 12 1 H0YJS9;G3V500;G3V3N9;F8W717;A0A3B3IU69;O00423;O00423-3 H0YJS9 EML1 Echinoderm microtubule-associated protein-like 1 5 T(0.998)GS(0.54)T(0.54)S(0.715)S(0.208)S(0.626)S(0.714)S(0.658)GKK 50.024 0.026413 26367000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 T(ph)GSESSQTGTSTTSSR ddPTM_K562_Paclitaxel_30min_R1 3 TGSESSQTGTSTTSSR 16 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 T(0.998)GS(0.002)ESSQTGTSTTSSR;T(0.74)GS(0.26)ESSQTGTSTTSSR;T(0.608)GS(0.392)ESSQTGTSTTSSR 172.26 1.23E-08 10748160 2058.889 1911.11 3527.92 2793.83 1912.96 1597.952 1851.95 2010.3 1542.56 2896.41 TRUE FALSE 2087.719798 2119.771453 2637.252963 2614.646249 2173.537539 1881.326351 2203.347845 1839.512467 1690.72978 2306.120052 0.905295367 0.919193886 1.143588757 1.133785835 0.942508408 0.81579723 0.955435014 0.797665527 0.733149074 1 11.1712519 -7.003106745 7.425552268 0.856196992 1.028017806 0.371799415 0.101088399 0.141668698 55.46926769 0.034081301 0.036770797 9.93E-08 7.003106745 0.171820814 T(ph)GSPGPELLFHEGQQKR ddPTM_K562_Paclitaxel_30min_R1 1 TGSPGPELLFHEGQQKR 17 1 A6NHN7;A6NHB5;Q14202-2;Q14202;A6NL54;Q14202-3 A6NHN7 ZMYM3 Zinc finger MYM-type protein 3 1 T(0.5)GS(0.5)PGPELLFHEGQQKR 81.157 0.008954 11862000 4293.1 3332.5 8195.1 5008.5 3780.1 3040.2 3065.3 4406.5 4785.8 6092.5 TRUE FALSE 4353.216645 3696.35362 6126.145649 4687.277227 4295.013618 3579.336783 3646.924673 4032.14032 5245.497474 4850.845156 0.89741406 0.762001981 1.262902742 0.96628053 0.885415527 0.737879002 0.751812222 0.83122429 1.081357435 1 12.24402041 -6.80090988 4.747982146 0.857575032 0.978471288 0.068121957 0.152055361 0.46480355 23.65039763 0.049441271 0.058301891 1.58E-07 6.80090988 0.120896256 T(ph)HGT(ph)FGREPAAVKPDDDRY(ph)LR ddPTM_K562_Paclitaxel_30min_R1 1 THGTFGREPAAVKPDDDRYLR 21 3 A0A087X097;Q9H251-11;Q9H251-10;Q9H251-9;Q9H251-7;Q9H251-4;Q9H251-2;Q9H251-3;Q9H251;Q9H251-8 A0A087X097 CDH23 Cadherin-23 3 T(1)HGT(1)FGREPAAVKPDDDRY(1)LR 45.138 0.022229 10590000 823 658.81 847.11 758.51 944.24 757.93 437.03 899.93 398.61 891.17 TRUE FALSE 834.5245392 730.7411038 633.2466036 709.8625636 1072.861474 892.3382436 519.9541611 823.4753293 436.8982715 709.5490648 1.176133661 1.029866911 0.892463446 1.000441828 1.512032821 1.257613163 0.732795217 1.160561503 0.615740747 1 9.470758639 -7.755998991 24.99958958 0.890654489 1.138202747 0.283343157 0.207810624 204.5947543 940155.5867 0.084740791 0.063703842 1.75E-08 7.755998991 0.247548258 T(ph)HSFENVSCHLPDSR ddPTM_K562_Paclitaxel_30min_R1 2 THSFENVSCHLPDSR 15 0 Q5VZ89-5;Q5VZ89-3;Q5VZ89;Q5VZ89-7;X6RAE7 Q5VZ89-5 DENND4C DENN domain-containing protein 4C 1 T(0.715)HS(0.285)FENVSCHLPDSR;T(0.552)HS(0.448)FENVSCHLPDSR 83.666 0.021816 55738000 1998.47 2073.89 2856.55 2519.46 2202.39 2034.73 1835.98 2316.45 2079.43 2497.67 TRUE FALSE 2026.454746 2300.324324 2135.378623 2357.873112 2502.392805 2395.560796 2184.347621 2119.653114 2279.168543 1988.643483 1.019013596 1.156730376 1.073786549 1.185669092 1.258341591 1.204620545 1.098410871 1.065878893 1.146092078 1 10.95756894 -7.950173478 9.490318427 1.080003013 1.153099682 0.202681413 0.070740559 0.637506392 115.5262616 0.031210091 0.021006422 1.12E-08 7.950173478 0.073096669 T(ph)IAHSPTSFTESSSK ddPTM_K562_Paclitaxel_30min_R1 1 TIAHSPTSFTESSSK 15 0 Q03164-2;Q03164;Q03164-3 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 T(0.909)IAHS(0.091)PTSFTESSSK 104.55 0.0032726 81667000 10278 8316.6 16713 10610 8431.3 7082.4 7174.6 10944 8613.3 12796 TRUE FALSE 10421.92371 9224.634513 12493.59645 9929.522089 9579.785803 8338.364198 8535.942896 10014.23889 9440.64595 10188.16818 1.022943824 0.905426211 1.226284866 0.974613092 0.940285401 0.818436058 0.837829014 0.982928306 0.926628397 1 13.31460706 -6.643955644 3.662600501 0.907400933 1.044619646 0.29365639 0.090725133 0.286953978 7.351650181 0.028201704 0.037100101 2.27E-07 6.643955644 0.137218713 T(ph)KFASDDEHDEHDENGATGPVK ddPTM_K562_Paclitaxel_30min_R1 1 TKFASDDEHDEHDENGATGPVK 22 1 P05455 P05455 SSB Lupus La protein 1 T(0.753)KFAS(0.247)DDEHDEHDENGATGPVK 82.517 0.001488 96350000 4167.8 2704.4 8628.1 4148.3 2461.6 1808 2206.6 3848 2673.6 4779.1 TRUE FALSE 4226.162059 2999.675538 6449.829444 3882.246605 2796.911595 2128.623414 2625.290831 3521.088382 2930.411226 3805.116797 1.110652388 0.788326797 1.695041122 1.020270024 0.735039618 0.559410796 0.68993699 0.92535619 0.770123858 1 11.89372502 -6.61041101 4.826255678 0.763265392 1.186398815 0.388358541 0.235870254 0.21342802 8.668821504 0.071531511 0.093569355 2.45E-07 6.61041101 0.423133424 T(ph)KFASDDEHDEHDENGATGPVKR ddPTM_K562_Paclitaxel_30min_R1 1 TKFASDDEHDEHDENGATGPVKR 23 2 P05455 P05455 SSB Lupus La protein 1 T(0.5)KFAS(0.5)DDEHDEHDENGATGPVKR 85.407 0.0045754 98815000 2360 1097.1 5181.1 2939.6 1656.3 1354.2 1182.8 1945.3 2917.7 2995.4 TRUE FALSE 2393.047281 1216.885088 3873.067226 2751.067213 1881.916101 1594.348356 1407.230125 1780.034623 3197.958122 2384.935836 1.003401117 0.510238083 1.623971248 1.153518334 0.789084584 0.668507862 0.59004947 0.746365833 1.340899019 1 11.21973474 -6.768475963 24.94819987 0.820482142 1.071971125 0.093944236 0.318956865 364.467397 1292215.845 0.10211444 0.118243294 1.70E-07 6.768475963 0.251488983 T(ph)KLHQLSGSDQLESTAHSR ddPTM_K562_Paclitaxel_30min_R1 1 TKLHQLSGSDQLESTAHSR 19 1 A0A087X2D8;O60271-5;O60271-3;O60271-4;O60271-2;O60271 A0A087X2D8 SPAG9 C-Jun-amino-terminal kinase-interacting protein 4 1 T(0.537)KLHQLS(0.231)GS(0.231)DQLESTAHSR 78.021 0.011011 41111000 3761.9 2936.1 5375.7 4103.1 3088 2784.4 2784.3 4047 4772.3 4828 TRUE FALSE 3814.578206 3256.673327 4018.538049 3839.945531 3508.63788 3278.174245 3312.60639 3703.182089 5230.700738 3844.05095 0.992332895 0.847198273 1.045391464 0.998932007 0.912744895 0.85279157 0.861748825 0.96335406 1.360726173 1 11.90841174 -8.616377092 8.704065725 1.178676198 0.92916715 0.482559089 0.102392515 0.212169694 17.61983117 0.066649056 0.024992888 2.42E-09 8.616377092 -0.249509047 T(ph)KS(ph)S(ph)RRGVS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 TKSSRRGVSR 10 3 F8WCQ3;P53355-4;P53355;P53355-3 F8WCQ3 DAPK1 Death-associated protein kinase 1 4 T(1)KS(1)S(1)RRGVS(1)R 59.225 0.026261 0 0 67.087 117.61 0 56.133 120.18 0 240.07 0 154.18 TRUE FALSE 0 74.41178553 87.91790092 0 63.77926494 141.4922356 0 219.674555 0 122.7580314 0 0.606166331 0.716188586 0 0.519552686 1.152610823 0 1.789492326 0 1 6.939673605 -7.009909484 24.57994981 0.793775876 0.363060769 0.139490584 0.535754445 796.7002673 1976178.214 0.159847154 0.171026056 9.77E-08 7.009909484 -0.430715108 T(ph)LGTPTQPGSTPR ddPTM_K562_Paclitaxel_30min_R1 1 TLGTPTQPGSTPR 13 0 Q8NFH5-2;Q8NFH5;Q8NFH5-3 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 T(0.712)LGT(0.271)PT(0.017)QPGSTPR 174.46 0.00027675 65426000 1976.8 1666.4 2588.1 2567.8 1921.8 1913.6 1612.3 2309.2 1919.5 2429.4 TRUE FALSE 2004.481299 1848.343187 1934.702146 2403.112801 2183.581696 2252.950092 1918.225508 2113.019046 2103.876552 1934.286946 1.036289524 0.955568247 1.000214652 1.24237658 1.128881989 1.164744505 0.991696455 1.092402061 1.087675515 1 10.91758612 -6.043171631 24.97424715 1.105524928 0.991419361 0.306977178 0.071177779 501.4759729 290096.8839 0.019555888 0.033874724 9.05E-07 6.043171631 -0.114105567 T(ph)LSPEFNER ddPTM_K562_Paclitaxel_30min_R1 1 TLSPEFNER 9 0 Q9BSJ8;Q9BSJ8-2 Q9BSJ8 ESYT1 Extended synaptotagmin-1 1 T(0.651)LS(0.349)PEFNER 157.97 1.18E-05 57662000 2303.3 2185.3 3208.4 3142.4 2341.7 2085.2 2621.2 2700.9 1929 3266 TRUE FALSE 2335.553306 2423.898444 2398.399739 2940.860529 2660.679185 2454.980942 3118.559016 2471.441687 2114.289069 2600.387407 0.898155905 0.932129742 0.922324009 1.130931691 1.023185691 0.944082768 1.199267081 0.950412881 0.813066954 1 11.34451086 -6.053640074 24.99755767 1.0135787 0.918163369 0.149888508 0.099069924 581.8461522 271153.3157 0.027585969 0.047780756 8.84E-07 6.053640074 -0.095415331 T(ph)LSSSSMDLSRR ddPTM_K562_Paclitaxel_30min_R1 1 TLSSSSMDLSRR 12 1 Q9H0B6;Q9H0B6-2 Q9H0B6 KLC2 Kinesin light chain 2 1 T(0.969)LS(0.031)SSSMDLSRR 96.135 0.014345 27013000 1756.2 1076.5 1306.7 1284.2 1110.3 896.33 1336.5 1249.5 1625.7 1698.5 TRUE FALSE 1780.792218 1194.03591 976.8074239 1201.83716 1261.541658 1055.28154 1590.093898 1143.347176 1781.855749 1352.344768 1.316818212 0.882937502 0.722306506 0.888706185 0.932855059 0.780334694 1.175805117 0.845455392 1.317604646 1 10.40124728 -8.750198003 24.99599285 1.158802386 0.933953366 0.179778051 0.183409474 304.8402775 677843.9114 0.123642503 0.045789331 1.78E-09 8.750198003 -0.22484902 T(ph)LTIFMEY(ph)MPGGS(ph)VK ddPTM_K562_Paclitaxel_30min_R1 1 TLTIFMEYMPGGSVK 15 0 J3KRN4;J3QRB6;Q99759;Q99759-2 J3KRN4 MAP3K3 Mitogen-activated protein kinase kinase kinase 3 3 T(0.885)LT(0.117)IFMEY(0.999)MPGGS(0.999)VK 50.787 0.030253 0 293.55 238.85 339.48 352.35 375.04 261.27 248.32 295.19 319.76 225.56 TRUE FALSE 297.6606057 264.9284507 253.7740754 329.7518481 426.1267975 307.6025661 295.4374237 270.111767 350.4743767 179.5907482 1.657438419 1.475178724 1.413068757 1.836129374 2.372765868 1.712797397 1.645059262 1.504040546 1.951516881 1 7.48856922 -11.25460953 4.599435488 0.999729485 1.725383106 0.405363023 0.265116479 216911267.8 288.5292518 621433.3575 0.069654204 5.56E-12 11.25460953 0.725653622 T(ph)LTPPLRR ddPTM_K562_Paclitaxel_30min_R1 1 TLTPPLRR 8 1 Q5T200-2;Q5T200 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 T(0.974)LT(0.026)PPLRR 84.568 0.028569 95990000 3375.3 3123.6 4909.4 4224 3026.7 2980.2 3072.6 3631 3370 4098.3 TRUE FALSE 3422.564614 3464.645211 3669.961251 3953.091546 3438.987782 3508.696626 3655.60981 3322.523886 3693.703558 3263.06421 1.048880559 1.061776596 1.124697835 1.211466061 1.05391361 1.075276611 1.120299686 1.018222037 1.131973911 1 11.67201166 -10.96472528 0.39349803 0.96138803 1.100381857 0.215481074 0.052855289 23.51057687 2.656474275 1.095237145 0.03712653 1.08E-11 10.96472528 0.138993826 T(ph)MAGASSS(ph)LVVKLADT(ph)DR ddPTM_K562_Paclitaxel_30min_R1 1 TMAGASSSLVVKLADTDR 18 1 Q96J87-4;Q96J87-2;Q96J87-3;Q96J87 Q96J87-4 CELF6 CUGBP Elav-like family member 6 3 T(1)MAGAS(0.206)S(0.206)S(0.588)LVVKLADT(1)DR 65.374 0.017295 13647000 1075.7 841.36 1032.6 1005 896.91 927.51 1102.9 1283.7 980.37 1182.2 TRUE FALSE 1090.763119 933.2225301 771.907359 940.5437982 1019.084327 1091.990876 1312.169517 1174.641672 1074.538919 941.2669911 1.15882436 0.991453582 0.820072696 0.999231681 1.082672968 1.160128726 1.394046036 1.247936753 1.141587806 1 9.878460192 -7.103178351 2.338059244 1.219655392 0.981649128 0.360484971 0.12068486 0.294879835 3.172077007 0.045197233 0.046217775 7.89E-08 7.103178351 -0.238006264 T(ph)PASGLQTPTSTPAPGSATR ddPTM_K562_Paclitaxel_30min_R1 1 TPASGLQTPTSTPAPGSATR 20 0 Q96DF8 Q96DF8 DGCR14 Protein DGCR14 1 T(0.825)PAS(0.017)GLQT(0.156)PTS(0.001)TPAPGSATR 128.72 8.89E-07 10371000 1123.4 1299.8 1821.6 1449.8 1359.4 1119 1151.1 1530.4 1095.4 1376.3 TRUE FALSE 1139.131066 1441.71656 1361.714551 1356.816317 1544.573295 1317.438938 1369.515216 1400.382968 1200.618064 1095.809305 1.039534033 1.315663732 1.242656496 1.238186527 1.40952745 1.20225201 1.24977513 1.277944038 1.095645072 1 10.09778104 -8.926578427 3.582495037 1.001662661 1.252740658 0.462657368 0.088344777 0.170911282 4.309129813 0.081653876 0.021673492 1.18E-09 8.926578427 0.251077997 T(ph)PASTPVSGTPQAS(ph)PMIER ddPTM_K562_Paclitaxel_30min_R1 2 TPASTPVSGTPQASPMIER 19 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 2 T(0.677)PAS(0.03)T(0.286)PVS(0.004)GT(0.002)PQAS(1)PMIER;T(0.783)PAS(0.019)T(0.197)PVSGT(0.001)PQAS(1)PMIER 174.04 1.47E-13 87164000 3028.7 2593.1 3896.3 2992.3 2476.6 2624.4 3135.7 3372.6 2341.04 4322.6 TRUE FALSE 3071.111144 2876.223427 2912.630876 2800.387271 2813.954849 3089.800492 3730.682706 3086.076579 2565.907352 3441.651747 0.892336404 0.835710188 0.846288669 0.813675374 0.817617544 0.897766746 1.083980303 0.896684733 0.74554532 1 11.74888541 -7.514520556 24.94132561 0.932647332 0.841397144 0.213734223 0.082294328 647.1416155 1931120.036 0.031550134 0.02566465 3.06E-08 7.514520556 -0.091250189 T(ph)PDYFL ddPTM_K562_Paclitaxel_30min_R1 1 TPDYFL 6 0 H0YBN9;P67775-2;P67775;P62714 H0YBN9 PPP2CB;PPP2CA Serine/threonine-protein phosphatase 2A catalytic subunit alpha isoform;Serine/threonine-protein phosphatase 2A catalytic subunit beta isoform 1 T(1)PDYFL 65.038 0.020052 8518800 2756.8 2326.4 3199.7 3041.2 2648.6 2355.4 2489.7 2704.3 1841.7 2666.6 TRUE FALSE 2795.403705 2580.404219 2391.896162 2846.151044 3009.384161 2773.097119 2962.107578 2474.552835 2018.603514 2123.145456 1.316633157 1.215368552 1.126581391 1.340535118 1.4174178 1.306126771 1.395150563 1.165512626 0.95076082 1 11.0519875 -8.582088553 3.778258409 0.979296634 1.298203626 0.723804081 0.080294185 0.132487862 3.782455715 0.06779568 0.023299972 2.62E-09 8.582088553 0.318906992 T(ph)PEFLR ddPTM_K562_Paclitaxel_30min_R1 1 TPEFLR 6 0 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 1 T(1)PEFLR 106.36 0.030572 8446600 753.1 1030.5 1174.7 1017 756.14 1054.5 841.52 1089.4 502.97 964.95 TRUE FALSE 763.6457235 1143.013475 878.1324565 951.7741719 859.1390696 1241.500769 1001.194027 996.8486702 551.2825158 768.2926603 0.993951606 1.487731868 1.142966088 1.238817213 1.118244536 1.615921683 1.30314147 1.297485609 0.717542343 1 9.585512161 -8.750705758 24.99382652 0.858771181 1.283386825 0.459083541 0.18043441 153.225061 356798.6185 0.119966234 0.044329034 1.78E-09 8.750705758 0.424615644 T(ph)PELPEPSVK ddPTM_K562_Paclitaxel_30min_R1 2 TPELPEPSVK 10 0 A9Z1X7;Q8IYB3-2;Q8IYB3;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 T(1)PELPEPSVK;T(1)PELPEPSVK 147.62 0.00088459 77811000 6968.7 5691 13012.9 8476.1 6779.6 5476.3 5572.4 8300.3 5785.6 10255.5 TRUE FALSE 7066.2833 6312.362626 9727.632453 7932.480884 7703.0963 6447.444914 6629.73381 7595.137706 6341.332731 8165.423471 0.865390916 0.773060044 1.19132002 0.971472075 0.94337989 0.78960325 0.811927738 0.930158458 0.776607944 1 12.99531199 -7.128532181 7.232072669 0.854408826 0.955101727 0.120682816 0.116733118 0.547319818 29.74278671 0.039625564 0.039687529 7.44E-08 7.128532181 0.100692902 T(ph)PMEHVT(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 TPMEHVTPK 9 0 A0A0A0MR08;O94966-2;O94966-7;O94966-6;O94966-5;E7ESU0;O94966-4;O94966-3;O94966 A0A0A0MR08 USP19 Ubiquitin carboxyl-terminal hydrolase 19;Ubiquitin carboxyl-terminal hydrolase 2 T(1)PMEHVT(1)PK 53.968 0.03113 0 485.3 320.02 264.94 355.53 286.3 339.43 238.28 317.21 120.91 215.07 TRUE FALSE 492.0956973 354.9608658 198.0526203 332.7278971 325.2989071 399.6231447 283.4923861 290.2610305 132.5239457 171.2386159 2.873742553 2.072901979 1.156588537 1.943065793 1.899681946 2.333720945 1.655540046 1.695067605 0.773913904 1 7.41986427 -2.00000002 0.078129006 0.116709505 5.992115559 0.45222956 0.44688962 221.1255183 1.26541064 14.75683025 140.6626162 0.01 2.00000002 5.875406055 T(ph)PPGPCCSPGVGWAQR ddPTM_K562_Paclitaxel_30min_R1 2 TPPGPCCSPGVGWAQR 16 0 H3BSW6;Q2VPK5-3;Q2VPK5;Q2VPK5-5 H3BSW6 CTU2 Cytoplasmic tRNA 2-thiolation protein 2 1 T(0.938)PPGPCCS(0.062)PGVGWAQR;T(1)PPGPCCSPGVGWAQR 178.46 2.69E-09 72985000 246.67 451.95 390.93 302.75 207.509 234.357 347.56 175.27 499.83 558.59 TRUE FALSE 250.124141 501.2954294 292.2348865 283.3329701 235.775239 275.9169234 413.5076956 160.3797195 547.8409048 444.7490514 0.562393872 1.127142212 0.657078156 0.637062562 0.530130954 0.620387885 0.929755093 0.360607221 1.231797804 1 8.796847718 -8.78099828 24.99999996 1.11589918 0.692507641 0.412172081 0.208576949 274.9339256 351408.0084 0.194451737 0.050501043 1.66E-09 8.78099828 -0.423391539 T(ph)PPRDLPTIPGVTSPSSDEPPMEASQSHLR ddPTM_K562_Paclitaxel_30min_R1 4 TPPRDLPTIPGVTSPSSDEPPMEASQSHLR 30 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 1 T(0.917)PPRDLPT(0.083)IPGVTSPSSDEPPMEASQSHLR;T(0.971)PPRDLPT(0.028)IPGVTSPSSDEPPMEASQSHLR;T(0.918)PPRDLPT(0.064)IPGVT(0.006)S(0.006)PS(0.004)S(0.002)DEPPMEASQSHLR;T(0.617)PPRDLPT(0.274)IPGVT(0.078)S(0.029)PS(0.001)S(0.001)DEPPMEASQSHLR 114.58 1.04E-11 355171000 400.65 759.78 1089.94 641.89 721.64 541.515 682.03 734.31 668.74 1104.28 TRUE FALSE 406.2603361 842.7353498 814.7711668 600.7220484 819.9395855 637.545082 811.4416321 671.9257821 732.975465 879.2271298 0.462065287 0.958495616 0.926690202 0.683238754 0.932568568 0.725119893 0.922903314 0.764223213 0.833658835 1 9.780092093 -14.99999857 0.024844065 2.095005018 3.64E-11 0.190846212 0.140895572 4345.136938 8.133861446 496.5442334 234.5212318 1.00E-15 14.99999857 -2.095005018 T(ph)PRTPRT(ph)PQLK ddPTM_K562_Paclitaxel_30min_R1 1 TPRTPRTPQLK 11 2 Q6PKG0;A0A0B4J210;Q6PKG0-3;E5RH50;H0YC33 Q6PKG0 LARP1 La-related protein 1 2 T(0.811)PRT(0.249)PRT(0.94)PQLK 84.468 0.017366 8847700 4547.1 3619.9 7185.9 4566.4 3281 2755.1 2910.7 4312.1 3687.4 5303.7 TRUE FALSE 4610.773429 4015.132924 5371.730671 4273.531542 3727.927748 3243.678301 3462.99013 3945.76019 4041.591246 4222.803029 1.091875088 0.95082174 1.272077015 1.012012995 0.882808817 0.768133934 0.820069065 0.934393616 0.957087323 1 12.04398524 -6.625478978 4.134512367 0.880955944 1.096691349 0.491708854 0.096020675 0.182884091 5.711037697 0.029626541 0.038938623 2.37E-07 6.625478978 0.215735405 T(ph)PS(ph)LGREGAHDKGAGR ddPTM_K562_Paclitaxel_30min_R1 1 TPSLGREGAHDKGAGR 16 2 Q9P2Q2;A0A0J9YYA7 Q9P2Q2 FRMD4A FERM domain-containing protein 4A 2 T(1)PS(1)LGREGAHDKGAGR 75.764 0.027098 10710000 1964.7 2346.7 2186.5 2270.1 2255.7 1761.6 2176.1 2190.6 2416.4 2314.9 TRUE FALSE 1992.211862 2602.920642 1634.491033 2124.505947 2562.964529 2073.995026 2589.003615 2004.494857 2648.506017 1843.122109 1.080889786 1.412234506 0.886805613 1.152666953 1.390556012 1.125261867 1.404683717 1.087554019 1.4369672 1 10.84793594 -6.550331923 24.96662759 1.249808714 1.132624638 0.078811536 0.180097871 529.0202672 481101.579 0.050092661 0.064670706 2.82E-07 6.550331923 -0.117184076 T(ph)PSASNDDQQE ddPTM_K562_Paclitaxel_30min_R1 2 TPSASNDDQQE 11 0 O43765 O43765 SGTA Small glutamine-rich tetratricopeptide repeat-containing protein alpha 1 T(0.541)PS(0.389)AS(0.069)NDDQQE;T(0.497)PS(0.497)AS(0.006)NDDQQE 171.92 0.00054154 7963200 2828.53 2783.58 3388.42 3118.02 2613.46 2627.23 2756.48 3448.96 2680.21 3777.13 TRUE FALSE 2868.138147 3087.500678 2532.971464 2918.044153 2969.457498 3093.132352 3279.50769 3155.94932 2937.656146 3007.348833 0.953709831 1.026651995 0.84226061 0.970304516 0.987400419 1.028524632 1.090497934 1.049412455 0.976825872 1 11.55427651 -6.992189633 2.341303267 1.035759876 0.945887036 0.360142877 0.05071954 0.323797693 3.573530003 0.01833972 0.020128093 1.02E-07 6.992189633 -0.08987284 T(ph)PSGEFLER ddPTM_K562_Paclitaxel_30min_R1 2 TPSGEFLER 9 0 B3KT28;B1ANM7;Q9UNN5-2;Q9UNN5 B3KT28 FAF1 FAS-associated factor 1 1 T(0.951)PS(0.049)GEFLER;T(0.806)PS(0.194)GEFLER 128.03 0.0025824 78249000 1983.65 2061.36 3020 2384.3 2313.2 2075.54 2070.53 2658.8 1477.22 2675.1 TRUE FALSE 2011.42722 2286.426256 2257.563649 2231.38167 2628.297003 2443.607877 2463.402259 2432.918344 1619.113581 2129.913152 0.944370534 1.073483327 1.059932255 1.047639744 1.23399257 1.147280524 1.15657404 1.14226176 0.760178217 1 11.05657889 -8.748100366 24.99989974 0.880089083 1.104516913 0.482710226 0.091278339 167.1861021 313342.9175 0.063275464 0.023612451 1.79E-09 8.748100366 0.22442783 T(ph)PSSEEISPTKFPGLYR ddPTM_K562_Paclitaxel_30min_R1 2 TPSSEEISPTKFPGLYR 17 1 J3QLT3;E7ENF8;A0A1W2PRI7;Q15311 J3QLT3 RALBP1 RalA-binding protein 1 1 T(0.454)PS(0.32)S(0.227)EEISPTKFPGLYR;T(0.852)PS(0.142)S(0.006)EEISPTKFPGLYR 143.97 6.23E-08 129574000 2055.14 2066.37 4019.9 2330.4 1980.22 1518.4 1834.18 2025.79 1987.17 3018.8 TRUE FALSE 2083.918301 2291.983265 3005.026528 2180.938574 2249.959489 1787.666921 2182.20608 1853.686495 2178.046557 2403.566903 0.867010732 0.953575813 1.250236273 0.907375855 0.936091892 0.74375584 0.907903199 0.771223174 0.906172636 1 11.23096125 -6.504026749 24.69857421 0.866444973 1.026971368 0.243882526 0.114422924 840.4647577 1101118.795 0.032441376 0.047186233 3.13E-07 6.504026749 0.160526395 T(ph)PSSSPPIT(ph)PPASETK ddPTM_K562_Paclitaxel_30min_R1 1 TPSSSPPITPPASETK 16 0 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 2 T(0.413)PS(0.054)S(0.303)S(0.578)PPIT(0.652)PPASETK 112.82 0.0089237 11855000 2438.3 2223.3 5516 2945.6 2591.6 2452.3 1887 2969.3 2369.3 3406.9 TRUE FALSE 2472.443723 2466.047413 4123.417579 2756.6824 2944.619796 2887.180973 2245.048399 2717.039431 2596.881851 2712.57191 0.911475826 0.909117802 1.520113647 1.016261501 1.08554534 1.064370298 0.827645671 1.001646969 0.957350418 1 11.40544567 -7.558313206 16.04315656 0.94667361 1.096148207 0.142503256 0.165973698 8.443733406 3819.998959 0.065303004 0.050589859 2.76E-08 7.558313206 0.149474597 T(ph)PSYSISSTLNPQAPEFILGCTASK ddPTM_K562_Paclitaxel_30min_R1 1 TPSYSISSTLNPQAPEFILGCTASK 25 0 Q14694;Q14694-3;Q14694-2;H3BQC6 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 T(0.461)PS(0.461)Y(0.011)S(0.044)IS(0.015)S(0.004)T(0.004)LNPQAPEFILGCTASK 66.413 0.0026592 5944400 2406.8 1980.5 2830.7 1786.4 1545.2 1745.1 2386.7 3049.5 2661.4 4493.1 TRUE FALSE 2440.502626 2196.737688 2116.054775 1671.8283 1755.6824 2054.568983 2839.563866 2790.425941 2917.039361 3577.403754 0.682199381 0.6140592 0.591505718 0.467330057 0.490769989 0.574318451 0.793749898 0.78001426 0.815406804 1 11.80469724 -7.811111183 3.447958448 0.839269809 0.562716666 0.749662174 0.078802395 0.132757736 3.219056304 0.036843626 0.02470508 1.54E-08 7.811111183 -0.276553143 T(ph)PTPEPAEVETR ddPTM_K562_Paclitaxel_30min_R1 1 TPTPEPAEVETR 12 0 F8W6G1;Q9UHY1 F8W6G1 NRBP1 Nuclear receptor-binding protein 1 T(0.923)PT(0.077)PEPAEVETR 179.67 0.0013332 172840000 1636.4 1532.5 1892 1509.9 1435.9 1518.1 1750.9 1690.7 1208.6 2239.4 TRUE FALSE 1659.314649 1699.823533 1414.3412 1413.061772 1631.49389 1787.31372 2083.124135 1547.064482 1324.69143 1783.009051 0.930626038 0.953345431 0.793232765 0.792515199 0.915022775 1.002414272 1.168319439 0.867670571 0.742952723 1 10.80009831 -6.999034715 24.93454601 0.960972121 0.866454647 0.122392071 0.111788924 73.21027609 1891012.696 0.037874761 0.042590106 1.00E-07 6.999034715 -0.094517474 T(ph)PTSSPAS(ph)SPLVAK ddPTM_K562_Paclitaxel_30min_R1 1 TPTSSPASSPLVAK 14 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 2 T(0.574)PT(0.033)S(0.033)S(0.367)PAS(0.452)S(0.541)PLVAK 108.36 0.0074578 45011000 4758.5 3458.4 5203.7 3596 3045.1 3010.6 3336.9 5235.4 4061 6102.4 TRUE FALSE 4825.133681 3835.999808 3889.961576 3365.368655 3459.894174 3544.487639 3970.059355 4790.620092 4451.077195 4858.72753 0.993085875 0.789507085 0.800613237 0.692644038 0.712098827 0.729509448 0.817098578 0.985982454 0.916099363 1 12.24636282 -8.171009258 4.317470791 0.96336827 0.779172771 0.501531554 0.080779955 0.19611892 6.445273289 0.042585843 0.023424481 6.75E-09 8.171009258 -0.1841955 T(ph)QNLVLY(ph)NIT(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 TQNLVLYNITK 11 0 Q6ZTR5-6;Q6ZTR5 Q6ZTR5-6 CXorf22 Uncharacterized protein CXorf22 3 T(1)QNLVLY(1)NIT(1)K 41.378 0.029417 20715000 0 140.93 0 0 0 102.31 0 0 0 0 TRUE FALSE 0 156.317214 0 0 0 120.453242 0 0 0 0 0 T(ph)QS(ph)IYDDMK ddPTM_K562_Paclitaxel_30min_R1 1 TQSIYDDMK 9 0 H0YEB1;A0A2R8Y5Y1;A0A2R8Y6B8;A0A2R8Y860;H0YEK4;A0A2R8Y4W1;A0A2U3TZS7;A0A163QEF0;A0A2R8YHI4;A0A2R8YG01;A0A2R8Y862;A0A2R8Y740;A0A2R8Y6J5;A0A2U3U0E3;A0A2R8YFE3;A0A2R8Y642;A0A2R8Y4N0;A0A2R8YD46;P43004-3;P43004-2;P43004 H0YEB1 SLC1A2 Amino acid transporter;Excitatory amino acid transporter 2 2 T(1)QS(0.607)IY(0.394)DDMK 89.355 0.011903 0 157.7 0 188.57 0 177.94 121.45 64.588 66.978 134.83 54.919 TRUE FALSE 159.9082865 0 140.9631713 0 202.1784405 142.9874523 76.84323583 61.28780084 147.7810239 43.72647765 3.657012756 0 3.223748604 0 4.623707451 3.270042773 1.757361671 1.401617604 3.379669067 1 5.450435233 -6.747648077 24.99958944 2.586311422 1.704717707 0.073940291 1.476007225 665.8732004 1207027.756 0.421241848 0.540927849 1.79E-07 6.747648077 -0.881593715 T(ph)QSGSSLSLASAATTEPESVHSGGTPSQR ddPTM_K562_Paclitaxel_30min_R1 1 TQSGSSLSLASAATTEPESVHSGGTPSQR 29 0 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 T(0.391)QS(0.16)GS(0.207)S(0.097)LS(0.125)LAS(0.018)AAT(0.001)TEPESVHSGGTPSQR 58.566 0.0024986 8489300 467.29 503.86 699.06 782.28 534.31 557.51 417.28 539.59 532.68 523.27 TRUE FALSE 473.8335017 558.8731387 522.5736571 732.1080622 607.0920679 656.3765707 496.4567017 493.7484615 583.8462941 416.6272868 1.137307893 1.341422313 1.254295323 1.757225428 1.457158682 1.575452668 1.191608705 1.185108314 1.401363551 1 8.702613521 -9.313872091 0.680939661 1.004629966 1.405597932 0.268678702 0.1826287 1.669890449 1.540608583 0.205484473 0.075471097 4.85E-10 9.313872091 0.400967967 T(ph)QSPEFEAQSSK ddPTM_K562_Paclitaxel_30min_R1 1 TQSPEFEAQSSK 12 0 H3BS42;Q9H5H4 H3BS42 ZNF768 Zinc finger protein 768 1 T(0.958)QS(0.042)PEFEAQSSK 99.069 0.024642 11393000 1333.5 1202.1 2470.1 1525.7 1074.8 1352.1 849.5 1863 1134.2 1706.4 TRUE FALSE 1352.173114 1333.349343 1846.492705 1427.848431 1221.205957 1591.875951 1010.68819 1704.726522 1243.144978 1358.634743 0.995244028 0.981389111 1.359079557 1.050943558 0.898847878 1.171673224 0.743899856 1.254734968 0.914995722 1 10.40794194 -6.517316269 24.96848943 1.003297923 1.116545852 0.08857336 0.164128069 608.2379606 2730224.773 0.046359012 0.061796564 3.04E-07 6.517316269 0.113247929 T(ph)QVS(ph)CFS(ph)NNYMMGDLR ddPTM_K562_Paclitaxel_30min_R1 1 TQVSCFSNNYMMGDLR 16 0 A2RUB1-1;A2RUB1-2;A2RUB1-5;A2RUB1 A2RUB1-1 C17orf104 Uncharacterized protein C17orf104 3 T(1)QVS(1)CFS(1)NNY(0.001)MMGDLR 55.546 0.029232 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 T(ph)RHSSNPPLESHVGWVMDSR ddPTM_K562_Paclitaxel_30min_R1 1 TRHSSNPPLESHVGWVMDSR 20 1 Q6PKG0;Q6PKG0-3;H0YC33 Q6PKG0 LARP1 La-related protein 1 1 T(0.333)RHS(0.333)S(0.333)NPPLESHVGWVMDSR 88.829 0.0015453 34458000 1717.3 1010.6 1993.7 1741.2 1386 1410.1 1330.5 1696.3 1688.6 2086.9 TRUE FALSE 1741.347498 1120.940726 1490.365777 1629.527225 1574.796665 1660.161436 1582.955429 1552.188727 1850.797575 1661.588634 1.04800157 0.67461988 0.896952318 0.980704364 0.94776567 0.999141064 0.952675889 0.934159451 1.113872313 1 10.69834754 -6.151316649 4.169185098 0.984096348 0.846334358 0.231497083 0.096429938 0.29064869 8.591534985 0.025089179 0.045574266 7.06E-07 6.151316649 -0.13776199 T(ph)RMQND ddPTM_K562_Paclitaxel_30min_R1 1 TRMQND 6 1 H0YDU3 H0YDU3 TOR1AIP1 1 T(1)RMQND 46.766 0.028167 3954600 3510.7 2971 6312.1 4213.5 3180.7 2925.7 2451.3 3886.9 3225.2 4318.5 TRUE FALSE 3559.860631 3295.383827 4718.532288 3943.264969 3613.96519 3444.531816 2916.421378 3556.683584 3534.994871 3438.38733 1.035328568 0.958409717 1.372309701 1.146835592 1.051064014 1.001787026 0.848194546 1.034404575 1.028096759 1 11.74751636 -7.039124115 2.910758424 0.976726519 1.132100157 0.278198334 0.110146595 0.37090479 6.291426372 0.040496984 0.042924245 9.14E-08 7.039124115 0.155373637 T(ph)RS(ph)ESPASLRRR ddPTM_K562_Paclitaxel_30min_R1 1 TRSESPASLRRR 12 3 Q9UBC3-8 Q9UBC3-8 DNMT3B DNA (cytosine-5)-methyltransferase 3B 2 T(0.999)RS(0.993)ES(0.009)PASLRRR 79.23 0.013366 4916300 809.51 651.25 804.99 953.71 667.31 731.32 820.09 856.18 612.81 827.37 TRUE FALSE 820.8456376 722.3556774 601.7603185 892.5433092 758.2089197 861.0093338 975.6977963 783.4421649 671.6731386 658.7515398 1.246062571 1.096552545 0.913486014 1.354901287 1.150978592 1.307031987 1.481131713 1.189283239 1.019615284 1 9.363590619 -4.914081379 18.01910067 1.184657884 3.415808544 0.010781608 0.166025596 1051.024935 232640.839 0.041738238 5243.603925 1.22E-05 4.914081379 2.23115066 T(ph)RS(ph)PSPTLGESLAPHK ddPTM_K562_Paclitaxel_30min_R1 1 TRSPSPTLGESLAPHK 16 1 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 2 T(0.935)RS(0.618)PS(0.438)PT(0.01)LGESLAPHK 90.718 0.030747 35078000 4386 3448.9 6780.5 4647.4 3464.1 3128.8 3526.2 4345.8 3030.1 5571 TRUE FALSE 4447.417532 3825.462565 5068.678915 4349.336565 3935.969068 3683.648749 4195.278042 3976.597164 3321.154644 4435.627142 1.002658111 0.862440066 1.14271979 0.980546026 0.887353455 0.830468529 0.945813953 0.896512948 0.748745225 1 12.11492238 -6.741172417 4.954079619 0.879377219 0.999425405 0.279893924 0.088390972 0.244700446 15.49729642 0.026628566 0.033200194 1.81E-07 6.741172417 0.120048186 T(ph)RS(ph)RS(ph)PESQVIGENTKQP ddPTM_K562_Paclitaxel_30min_R1 2 TRSRSPESQVIGENTKQP 18 3 O95218-2 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 3 T(0.99)RS(0.953)RS(0.597)PES(0.46)QVIGENTKQP;T(0.998)RS(0.994)RS(0.994)PES(0.013)QVIGENTKQP 75.877 0.0072346 31212000 4825.9 4553.3 11288.1 6139.6 5104 4836.6 4499.3 6986.1 6310.9 8304.8 TRUE FALSE 4893.477489 5050.444692 8438.279546 5745.833536 5799.251211 5694.303101 5353.018687 6392.587199 6917.090143 6612.277201 0.740059338 0.763798089 1.276153326 0.868964407 0.877042966 0.861171262 0.809557513 0.96677544 1.046098028 1 12.69093149 -8.505171058 8.4930613 1.017891823 0.893285095 0.137430486 0.140302346 0.456704112 196.5238699 0.086213035 0.038157755 3.12E-09 8.505171058 -0.124606728 T(ph)RSEPLPPSATAPPPPGPMQPR ddPTM_K562_Paclitaxel_30min_R1 2 TRSEPLPPSATAPPPPGPMQPR 22 1 J3KPH8;Q8WUI4-3;Q8WUI4-4;Q8WUI4;Q8WUI4-7;Q8WUI4-6;Q8WUI4-5;Q8WUI4-8;Q8WUI4-10 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 T(0.607)RS(0.393)EPLPPSATAPPPPGPMQPR;T(0.5)RS(0.5)EPLPPSATAPPPPGPMQPR 173.18 2.96E-19 163681000 1111.96 989.44 1318.13 1267.49 906.65 961.61 883.26 853.67 1086.49 1217.08 TRUE FALSE 1127.530871 1097.470405 985.3517791 1186.198864 1030.15108 1132.138032 1050.853974 781.1454051 1190.852219 969.0384279 1.163556406 1.132535484 1.016834576 1.22409889 1.063065251 1.16831077 1.08442962 0.806103641 1.228900924 1 9.920410068 -8.013067 24.72024283 0.999554699 1.124769961 0.18300701 0.10899883 795.6142133 1505144.327 0.045463265 0.027823445 9.70E-09 8.013067 0.125215261 T(ph)RSYDNLTTACDNTVPLASR ddPTM_K562_Paclitaxel_30min_R1 4 TRSYDNLTTACDNTVPLASR 20 1 G5E953;Q13615-3;Q13615-2;Q13615 G5E953 MTMR3 Myotubularin-related protein 3 1 T(0.861)RS(0.134)Y(0.005)DNLTTACDNTVPLASR;T(0.369)RS(0.369)Y(0.262)DNLTTACDNTVPLASR;T(0.794)RS(0.17)Y(0.036)DNLTTACDNTVPLASR;T(0.747)RS(0.142)Y(0.111)DNLTTACDNTVPLASR 143.47 1.08E-12 250997000 1955.96 2169.71 2902.49 2631.46 2249.87 1625.49 1826.06 2099.4 2044.39 2850.32 TRUE FALSE 1983.349475 2406.606275 2169.720502 2462.689934 2556.340385 1913.747828 2172.545352 1921.042866 2240.762794 2269.423219 0.873944295 1.060448423 0.956066935 1.08516116 1.126427351 0.843274984 0.957311679 0.846489473 0.987371053 1 11.14810996 -7.27102867 24.99747856 0.919196425 1.022656725 0.245159694 0.081445132 916.2279926 2388427.823 0.027892654 0.024903595 5.36E-08 7.27102867 0.1034603 T(ph)RSYDNLTTACDNTVPLASRR ddPTM_K562_Paclitaxel_30min_R1 1 TRSYDNLTTACDNTVPLASRR 21 2 G5E953;Q13615-3;Q13615-2;Q13615 G5E953 MTMR3 Myotubularin-related protein 3 1 T(0.553)RS(0.396)Y(0.014)DNLT(0.008)T(0.028)ACDNTVPLASRR 74.561 0.023972 12997000 183.56 267.13 305.86 191.49 248.9 186.14 192.21 343.09 251.82 150.83 TRUE FALSE 186.1304063 296.2961568 228.6418602 179.2086885 282.8043939 219.1493155 228.6808441 313.942363 276.0084362 120.0907632 1.549914426 2.467268496 1.903908794 1.492277039 2.354922114 1.824864041 1.904233415 2.614209075 2.298331935 1 6.90798138 -6.793330944 24.99992507 2.066649101 1.90080428 0.006604878 0.476454571 939.5809104 736536.1528 0.144585162 0.163957659 1.61E-07 6.793330944 -0.165844821 T(ph)S(ph)DLRKMVDMLQDS(ph)FPARFK ddPTM_K562_Paclitaxel_30min_R1 1 TSDLRKMVDMLQDSFPARFK 20 3 P12271 P12271 RLBP1 Retinaldehyde-binding protein 1 3 T(1)S(1)DLRKMVDMLQDS(1)FPARFK 42.044 0.025645 213540000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 T(ph)S(ph)EMPPVPGGLSLEEFSR ddPTM_K562_Paclitaxel_30min_R1 1 TSEMPPVPGGLSLEEFSR 18 0 Q6B0B8 Q6B0B8 TIGD3 Tigger transposable element-derived protein 3 2 T(1)S(1)EMPPVPGGLSLEEFSR 80.632 0.023611 32619000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 T(ph)S(ph)ETLWWLITLK ddPTM_K562_Paclitaxel_30min_R1 1 TSETLWWLITLK 12 0 Q9NP79-2;Q5TGM0 Q9NP79-2 VTA1 2 T(0.886)S(0.886)ET(0.229)LWWLITLK 68.132 0.028972 0 980.03 985.84 1115.9 1243.8 994.43 1063.7 1097.8 1031.1 1114.1 1129.3 TRUE FALSE 993.7534437 1093.477345 834.1772437 1164.028235 1129.888202 1252.33226 1306.101819 943.5016191 1221.114283 899.1480401 1.105216716 1.21612604 0.927741825 1.294590193 1.25662088 1.392798743 1.452599306 1.04932845 1.358079236 1 9.812414857 -6.303108036 24.93926 1.273474944 1.096337823 0.217725224 0.149028316 671.9673172 402180.0044 0.04085923 0.060604731 4.98E-07 6.303108036 -0.177137121 T(ph)S(ph)GDKPVS(ph)PHFVRR ddPTM_K562_Paclitaxel_30min_R1 1 TSGDKPVSPHFVRR 14 2 H0YGQ4;Q8IUG5-2;Q8IUG5;Q8IUG5-3 H0YGQ4 MYO18B Unconventional myosin-XVIIIb 3 T(1)S(1)GDKPVS(1)PHFVRR 83.894 0.026271 101470000 142.27 122.26 242.81 135.36 100.75 114.91 91.756 187.1 94.574 259.18 TRUE FALSE 144.2622189 135.6087603 181.5096125 126.6786154 114.4738557 135.2876751 109.166222 171.2046872 103.6582553 206.3589737 0.699083817 0.657149809 0.879581872 0.613875002 0.554731658 0.655593855 0.529011266 0.829644983 0.502320076 1 7.689012367 -11.28733158 4.672011534 1.000158592 0.661251925 0.440170641 0.115690253 0.000186465 2.84E-05 0.109293871 0.026495332 5.16E-12 11.28733158 -0.338906667 T(ph)S(ph)ISGSAESTMLPEISTTRK ddPTM_K562_Paclitaxel_30min_R1 1 TSISGSAESTMLPEISTTRK 20 1 Q8WXI7 Q8WXI7 MUC16 Mucin-16 2 T(0.498)S(0.498)IS(0.498)GS(0.498)AES(0.005)T(0.002)MLPEISTTRK 46.121 0.024407 23321000 0 0 0 0 0 0 0 0 63.994 0 TRUE FALSE 0 0 0 0 0 0 0 0 70.14090963 0 0 T(ph)S(ph)RT(ph)KRR ddPTM_K562_Paclitaxel_30min_R1 1 TSRTKRR 7 3 J3KN16 J3KN16 KIAA0368 3 T(1)S(1)RT(1)KRR 82.749 0.013515 69280000 2516.3 2729.8 4061.6 3086.1 2460 2379.2 2103.6 2744.7 2529.5 3575.3 TRUE FALSE 2551.535963 3027.848796 3036.198847 2888.171359 2795.093648 2801.117714 2502.747118 2511.520603 2772.469777 2846.651897 0.896328759 1.063652636 1.066585925 1.014585367 0.981888109 0.984004302 0.879189732 0.882271768 0.973940572 1 11.47505037 -7.424522155 2.42288242 0.925096915 1.01362126 0.232624433 0.057128692 0.361553146 4.171500206 0.023318551 0.019397848 3.76E-08 7.424522155 0.088524345 T(ph)S(ph)S(ph)PS(ph)TASTKSS(ph)GSGK ddPTM_K562_Paclitaxel_30min_R1 1 TSSPSTASTKSSGSGK 16 1 P25054-2;P25054-3;P25054 P25054-2 APC Adenomatous polyposis coli protein 5 T(0.945)S(0.95)S(0.932)PS(0.816)T(0.146)AS(0.115)T(0.109)KS(0.18)S(0.431)GS(0.376)GK 54.343 0.03099 5715100 0 53.984 106.93 0 0 0 0 0 0 0 TRUE FALSE 0 59.87815568 79.93419901 0 0 0 0 0 0 0 0 T(ph)SDANETEDHLESLICK ddPTM_K562_Paclitaxel_30min_R1 1 TSDANETEDHLESLICK 17 0 F2Z2T1;Q09161 F2Z2T1 NCBP1 Nuclear cap-binding protein subunit 1 1 T(0.498)S(0.498)DANET(0.004)EDHLESLICK 73.346 0.026519 7339600 1735.6 1905.5 4748.1 2700.4 1729 1748.2 1512.8 2589.4 2092.4 3321.5 TRUE FALSE 1759.903755 2113.548934 3549.383431 2527.208431 1964.519072 2058.218724 1799.845903 2369.414307 2293.384369 2644.576477 0.665476597 0.799201291 1.342136808 0.955619341 0.742848274 0.778279147 0.680580017 0.895952274 0.867202892 1 11.36882098 -5.522864752 25 0.899415757 0.698907634 0.159219426 0.172777833 0.859098754 1525800.419 0.048086911 0.130208766 3.00E-06 5.522864752 -0.200508123 T(ph)SDIFGSPVTATSR ddPTM_K562_Paclitaxel_30min_R1 1 TSDIFGSPVTATSR 14 0 A6NGP5;Q9H910;Q9H910-3;H3BU16;Q9H910-2;H3BMV3;H3BMT0;H3BTV5 A6NGP5 HN1L Hematological and neurological expressed 1-like protein 1 T(0.93)S(0.012)DIFGS(0.057)PVTATSR 149.82 0.00013771 16874000 1288.3 1492.2 1972.3 1663.2 1316.1 1060 1058.6 1540.9 1556.8 1760.3 TRUE FALSE 1306.340175 1655.123442 1474.368472 1556.529796 1495.375102 1247.976117 1259.463824 1409.990927 1706.337596 1401.549894 0.932068263 1.180923669 1.051955752 1.110577514 1.066943894 0.890425751 0.898622182 1.006022642 1.217464754 1 10.45280739 -7.034026577 24.82649999 0.994423347 1.077311059 0.090341324 0.101728593 1248.531826 910951.5919 0.034238129 0.034259095 9.25E-08 7.034026577 0.082887712 T(ph)SMLRSLLCSCSWR ddPTM_K562_Paclitaxel_30min_R1 1 TSMLRSLLCSCSWR 14 1 Q7L591-2;Q7L591-4;Q7L591-3 Q7L591-2 DOK3 Docking protein 3 1 T(0.803)S(0.197)MLRSLLCSCSWR 68.277 0.021781 0 3414.6 3376 4905.5 3691.7 2905.1 2608.6 3302.3 4246 3185.9 4203.9 TRUE FALSE 3462.414935 3744.603097 3667.045855 3454.930885 3300.823804 3071.198583 3928.894186 3885.275797 3491.91993 3347.142872 1.034438943 1.118746119 1.095574941 1.032202991 0.98616161 0.917558258 1.173805343 1.160773814 1.043253922 1 11.70871442 -10.56329613 11.64573838 0.99999386 1.063893262 0.059566033 0.074318926 0 0 0.078050692 0.018930073 2.73E-11 10.56329613 0.063899403 T(ph)SPADHGGSVGSESGGSAVDSVAGEHSVSGR ddPTM_K562_Paclitaxel_30min_R1 1 TSPADHGGSVGSESGGSAVDSVAGEHSVSGR 31 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 T(0.496)S(0.496)PADHGGS(0.004)VGS(0.002)ES(0.001)GGS(0.001)AVDSVAGEHSVSGR 50.224 0.0075447 20167000 380.31 288.69 616.53 499.29 403.91 398.3 317.15 435.84 242.21 421.67 TRUE FALSE 385.6355134 320.2101505 460.8793764 467.2677741 458.9293803 468.9329126 377.3275569 398.8126716 265.4753527 335.7334225 1.148636053 0.953763102 1.372753933 1.391782119 1.366945765 1.396741823 1.123890359 1.187884925 0.790732572 1 8.391172355 -8.647245499 4.974425921 0.898987339 1.252750929 0.484629932 0.144078555 0.189024369 7.217164294 0.11563312 0.040463234 2.25E-09 8.647245499 0.35376359 T(ph)SPDPSPVSAAPSK ddPTM_K562_Paclitaxel_30min_R1 2 TSPDPSPVSAAPSK 14 0 Q13469-3;Q13469-4;Q13469-2;Q13469;Q13469-5 Q13469-3 NFATC2 "Nuclear factor of activated T-cells, cytoplasmic 2" 1 T(0.997)S(0.003)PDPSPVSAAPSK;T(0.5)S(0.5)PDPSPVSAAPSK 223.03 2.10E-25 78063000 9580.9 7923.6 18289.1 11516.4 8365.2 7249.1 6750.6 9992.4 9260.2 12544.3 TRUE FALSE 9715.06216 8788.725444 13671.79051 10777.78965 9504.681864 8534.626103 8031.49111 9143.483249 10149.68359 9987.764774 0.972696332 0.879949182 1.368853874 1.079099267 0.95163253 0.85450812 0.804132986 0.915468421 1.016211717 1 13.28594613 -6.844059541 4.189054208 0.905923712 1.082387087 0.244447287 0.130171593 0.307569058 10.14377194 0.043493212 0.050644401 1.43E-07 6.844059541 0.176463376 T(ph)SPDSLRR ddPTM_K562_Paclitaxel_30min_R1 1 TSPDSLRR 8 1 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 1 T(0.986)S(0.014)PDSLRR 89.029 0.019313 2713700 775.52 604.98 849.01 912.79 845.22 748.15 730.46 952.46 533.21 1002.9 TRUE FALSE 786.3796727 671.0337623 634.6669251 854.2477349 960.3532737 880.823898 869.0609717 871.5425779 584.4272029 798.5084295 0.984810734 0.840359021 0.794815561 1.069804279 1.202683952 1.103086537 1.088355413 1.091463215 0.731898602 1 9.641163827 -6.27365803 24.42997937 1.056144391 0.870031498 0.271466684 0.124156623 661.099029 1321800.524 0.03578408 0.05353926 5.33E-07 6.27365803 -0.186112893 T(ph)SPHWK ddPTM_K562_Paclitaxel_30min_R1 1 TSPHWK 6 0 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 T(0.963)S(0.037)PHWK 89.369 0.029213 7429300 4265.6 3606.7 7633.3 4741.4 3572.1 3047.9 3170.5 4995.1 2159.6 6104.7 TRUE FALSE 4325.331561 4000.491703 5706.179008 4437.307826 4058.680496 3588.40227 3772.085824 4570.735077 2367.039229 4860.558789 0.889883601 0.823051809 1.173975926 0.912921336 0.835023435 0.738269492 0.776060117 0.940372347 0.486989116 1 12.24690647 -6.788205066 3.303298926 0.785009993 0.960366374 0.202483959 0.152411351 0.374275771 8.462091008 0.047231576 0.057604727 1.63E-07 6.788205066 0.175356381 T(ph)SPLVLDSNT(ph)VT(ph)QGHTAGR ddPTM_K562_Paclitaxel_30min_R1 1 TSPLVLDSNTVTQGHTAGR 19 0 Q92545 Q92545 TMEM131 Transmembrane protein 131 3 T(0.499)S(0.501)PLVLDS(0.04)NT(0.96)VT(0.601)QGHT(0.399)AGR 54.237 0.025841 7931600 0 0 0 0 0 160.61 0 0 0 0 TRUE FALSE 0 0 0 0 0 189.0919284 0 0 0 0 0 T(ph)SPPLLDR ddPTM_K562_Paclitaxel_30min_R1 6 TSPPLLDR 8 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 T(0.938)S(0.062)PPLLDR;T(0.936)S(0.064)PPLLDR;T(0.996)S(0.004)PPLLDR;T(0.941)S(0.059)PPLLDR;T(0.989)S(0.011)PPLLDR;T(0.537)S(0.463)PPLLDR 166.07 4.83E-09 1818468000 24099.6 24166.1 35204 29527.8 23743.4 22530.7 22678.9 27841.1 15780.1 31179.6 TRUE FALSE 24437.06875 26804.63652 26316.3148 27634.01907 26977.65306 26526.2033 26982.10288 25475.82478 17295.84911 24825.18041 0.98436621 1.07973582 1.0600654 1.113144743 1.086705217 1.068520062 1.086884463 1.026209049 0.696705878 1 14.59951658 -8.595910588 8.312856265 0.849691256 1.070006345 0.573811861 0.074820718 0.168447072 16.95956831 0.046342593 0.017357361 2.54E-09 8.595910588 0.220315089 T(ph)SPQVLGSILK ddPTM_K562_Paclitaxel_30min_R1 1 TSPQVLGSILK 11 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 T(0.977)S(0.023)PQVLGSILK 129.76 0.0023523 60412000 3802 3419.1 7132.7 4540.1 3019 3103.6 2860.5 5031.5 3475 5448.9 TRUE FALSE 3855.23973 3792.408901 5331.961669 4248.918307 3430.238912 3653.979883 3403.264942 4604.042669 3808.789277 4338.411189 0.8886294 0.874146948 1.22901252 0.979371969 0.790667081 0.84223918 0.784449605 1.061227825 0.877922611 1 12.08295108 T(ph)SPSDGAMANYESTEVMGDGESAHDSPR ddPTM_K562_Paclitaxel_30min_R1 2 TSPSDGAMANYESTEVMGDGESAHDSPR 28 0 Q14C86-4;Q14C86-2;Q14C86-6;F8W9S7;Q14C86-3 Q14C86-4 GAPVD1 GTPase-activating protein and VPS9 domain-containing protein 1 1 T(0.433)S(0.433)PS(0.134)DGAMANYESTEVMGDGESAHDSPR;T(0.499)S(0.499)PS(0.001)DGAMANYESTEVMGDGESAHDSPR 202.27 5.58E-46 25285000 1585.69 1282.29 1937.79 1722.54 1359.57 1569.68 1349.44 1870.8 963.83 1964.83 TRUE FALSE 1607.894552 1422.294759 1448.570948 1612.063994 1544.766452 1848.040709 1605.489195 1711.863863 1056.410178 1564.396567 1.027804961 0.909165098 0.925961472 1.030470168 0.987451957 1.181312173 1.026267398 1.09426465 0.675282853 1 10.61139056 -8.743092876 24.99996755 0.83764121 1.020290733 0.339539228 0.103267551 236.7515881 322613.5229 0.069569927 0.026184606 1.81E-09 8.743092876 0.182649524 T(ph)SPSGGTWSSVVSGVPR ddPTM_K562_Paclitaxel_30min_R1 3 TSPSGGTWSSVVSGVPR 17 0 Q99700;Q99700-4;Q99700-2;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;A0A5F9ZHH4;A0A5F9ZHX3 Q99700 ATXN2 Ataxin-2 1 T(0.911)S(0.089)PSGGTWSSVVSGVPR;T(0.984)S(0.016)PSGGTWSSVVSGVPR;T(0.776)S(0.224)PSGGTWSSVVSGVPR 228.49 2.41E-39 310266000 3783.37 3880.92 5856.2 4851.77 3862.2 3948.5 3793.31 4792.33 4074.48 4769 TRUE FALSE 3836.348853 4304.65197 4377.729881 4540.599188 4388.297028 4648.711035 4513.07077 4385.191654 4465.852009 3797.075182 1.010343137 1.133675728 1.15292157 1.195814929 1.15570454 1.22428733 1.188565028 1.154886707 1.176129467 1 11.89067285 -5.180885236 1.954405354 1.166937737 0.94045777 0.353207691 0.057413401 0.951168595 3.256705903 0.014188345 0.415685613 6.59E-06 5.180885236 -0.226479967 T(ph)SPTPPESATTVK ddPTM_K562_Paclitaxel_30min_R1 1 TSPTPPESATTVK 13 0 Q5M775;Q5M775-4;J3KSG2 Q5M775 SPECC1 Cytospin-B 1 T(0.626)S(0.374)PTPPESATTVK 191.53 0.00020489 21807000 2542 2011.2 5090.6 2807.9 1888.7 1811.3 1925.1 3110.3 1673.3 3420.9 TRUE FALSE 2577.595843 2230.789617 3805.41507 2627.813862 2145.972916 2132.508623 2290.377675 2846.060601 1834.027942 2723.718702 0.946351707 0.819023497 1.397139531 0.964789007 0.78788346 0.782940111 0.840900961 1.04491723 0.673354389 1 11.411362 -6.526274189 24.04541338 0.855064452 1.05570799 0.221648659 0.168682717 93.76843116 664027.7887 0.049752299 0.064603916 2.98E-07 6.526274189 0.200643538 T(ph)SPTVATQTGASATSTR ddPTM_K562_Paclitaxel_30min_R1 3 TSPTVATQTGASATSTR 17 0 Q6P1L5-2;Q6P1L5 Q6P1L5-2 FAM117B Protein FAM117B 1 T(0.971)S(0.029)PTVATQTGASATSTR;T(0.864)S(0.136)PTVATQTGASATSTR;T(0.864)S(0.136)PTVATQTGASATSTR 234.82 4.73E-40 44939000 5779.4 5844.1 7488.9 6283.6 5541.3 4845 4981.9 6457.4 5073.4 6589.3 TRUE FALSE 5860.329431 6482.178601 5598.234573 5880.59802 6296.118875 5704.192723 5927.189518 5908.803564 5560.722739 5246.397043 1.117019811 1.235548615 1.067062696 1.120883146 1.200084329 1.087259061 1.129763811 1.12625932 1.059912678 1 12.35711128 -9.06916088 0.802620588 0.997990351 1.143386028 0.468335619 0.046959985 0.65291263 0.943944605 0.044800402 0.016412056 8.53E-10 9.06916088 0.145395677 T(ph)SPVNLPNK ddPTM_K562_Paclitaxel_30min_R1 2 TSPVNLPNK 9 0 P35712-4;P35712-2;P35712-3;P35712 P35712-4 SOX6 Transcription factor SOX-6 1 T(0.619)S(0.381)PVNLPNK;T(0.983)S(0.017)PVNLPNK 120.63 0.0064417 14128800 11204.9 9945.8 20807.8 14133.7 10426.4 8840.9 8969.1 14477.8 7262.6 17272.4 TRUE FALSE 11361.80317 11031.71608 15554.61354 13227.22774 11846.6522 10408.70948 10670.9399 13247.82052 7960.20518 13752.2754 0.826176239 0.802173877 1.13105745 0.961821034 0.861432153 0.756871803 0.775939951 0.963318443 0.578828227 1 13.74738272 -6.957662422 4.90093548 0.809881531 0.934417399 0.136182558 0.136289355 0.383162877 21.25170104 0.043053671 0.048283774 1.10E-07 6.957662422 0.124535868 T(ph)SPVSLWSR ddPTM_K562_Paclitaxel_30min_R1 4 TSPVSLWSR 9 0 P11277 P11277 SPTB "Spectrin beta chain, erythrocytic" 1 T(0.991)S(0.009)PVSLWSR;T(0.941)S(0.059)PVSLWSR;T(0.996)S(0.004)PVSLWSR;T(0.995)S(0.005)PVSLWSR 187.99 1.43E-05 269030000 12718.7 12684.7 18345.4 14356.6 11547 11179.1 12642.9 15586.6 8463.9 17818.8 TRUE FALSE 12896.80104 14069.65844 13713.87688 13435.83193 13119.89689 13161.55642 15041.82427 14262.42104 9276.895413 14187.31878 0.909037235 0.991706655 0.966629219 0.947031088 0.924762254 0.927698646 1.060230232 1.005293619 0.653886443 1 13.79231434 -8.693797891 25 0.826893427 0.96717439 0.286223426 0.088178951 53.40149186 19736.26854 0.055408477 0.020942412 2.02E-09 8.693797891 0.140280963 T(ph)SSDSALHTSVMNPSPQDTYPGPTPPSILPSR ddPTM_K562_Paclitaxel_30min_R1 1 TSSDSALHTSVMNPSPQDTYPGPTPPSILPSR 32 0 Q53ET0;H0YDQ8 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 T(0.349)S(0.349)S(0.294)DS(0.007)ALHTSVMNPSPQDTYPGPTPPSILPSR 113.22 5.27E-15 48656000 415.57 336.53 725.15 517.3 442.19 277.72 377.72 487.17 260.74 602.28 TRUE FALSE 421.3892621 373.2734835 542.076914 484.1226933 502.4237643 326.9697426 449.3903982 445.7818677 285.785242 479.5350054 0.878745571 0.778407164 1.130421988 1.009566951 1.047731153 0.681847496 0.937137838 0.929612776 0.595963254 1 8.905492324 -7.241569847 24.92429984 0.831277146 0.969611916 0.192637683 0.143324982 1425.635582 1788315.649 0.047723565 0.047658594 5.73E-08 7.241569847 0.13833477 T(ph)SSDSALHTSVMNPSPQDTYPGPTPPSILPSRR ddPTM_K562_Paclitaxel_30min_R1 1 TSSDSALHTSVMNPSPQDTYPGPTPPSILPSRR 33 1 Q53ET0;H0YDQ8 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 T(0.329)S(0.329)S(0.329)DS(0.011)ALHTSVMNPSPQDTYPGPTPPSILPSRR 73.292 4.29E-05 14894000 0 0 0 0 0 0 138.12 0 0 69.451 TRUE FALSE 0 0 0 0 0 0 164.327549 0 0 55.29684808 0 0 0 0 0 0 2.97173446 0 0 1 5.789125344 T(ph)SSFTEQLDEGTPNRENASTHASK ddPTM_K562_Paclitaxel_30min_R1 1 TSSFTEQLDEGTPNRENASTHASK 24 1 E7EVX2;C9JHJ5;Q13439-5 E7EVX2 GOLGA4 Golgin subfamily A member 4 1 T(0.25)S(0.25)S(0.25)FT(0.25)EQLDEGTPNRENASTHASK 60.036 0.013246 33905000 1799.5 1558.7 2690.1 1972.2 1281.1 1103.6 1404.3 1818.9 1598 2401.6 TRUE FALSE 1824.698552 1728.884137 2010.950984 1845.711919 1455.607509 1299.307965 1670.758594 1664.373092 1751.49504 1912.152602 0.954264085 0.904155942 1.05166867 0.965253462 0.761240242 0.679500142 0.87375798 0.870418548 0.915980784 1 10.90098195 -6.721172941 14.90688752 0.836323365 0.970155323 0.297225544 0.087867544 3.063933268 1132.617879 0.026991404 0.034826492 1.90E-07 6.721172941 0.133831958 T(ph)SSGTSLSAMHSSGSSGK ddPTM_K562_Paclitaxel_30min_R1 3 TSSGTSLSAMHSSGSSGK 18 0 A6NNK5;Q12888;Q12888-3;Q12888-2;M0R142 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 T(0.318)S(0.318)S(0.318)GT(0.022)S(0.022)LS(0.001)AMHSSGSSGK;T(0.638)S(0.175)S(0.175)GT(0.01)S(0.003)LSAMHSSGSSGK;T(0.586)S(0.074)S(0.325)GT(0.013)S(0.001)LSAMHSSGSSGK 127.1 3.14E-06 143209800 11244.7 9607.9 18615.9 12061.5 8732.6 8726.7 7463.5 12037.6 10681.3 14594.5 TRUE FALSE 11402.16049 10656.92301 13916.08581 11287.92938 9922.127964 10274.25772 8879.660163 11014.93074 11707.28659 11620.13289 0.981241833 0.917108532 1.19758405 0.971411384 0.853873881 0.884177299 0.764161671 0.947917795 1.007500233 1 13.50433895 -6.526503844 21.79078264 0.899746908 1.031158905 0.252930678 0.093759549 27.85091621 167407.5272 0.028340575 0.036859768 2.98E-07 6.526503844 0.131411997 T(ph)SSLDTLAAPYLAGHWPR ddPTM_K562_Paclitaxel_30min_R1 1 TSSLDTLAAPYLAGHWPR 18 0 Q6P1L5-2;Q6P1L5 Q6P1L5-2 FAM117B Protein FAM117B 1 T(0.436)S(0.436)S(0.092)LDT(0.036)LAAPYLAGHWPR 159.4 1.91E-09 7229700 723.31 559.5 962.9 891.32 639.82 800.69 845.91 847.57 800.26 1152.1 TRUE FALSE 733.4385716 620.5881021 719.803986 834.1547246 726.9743162 942.6811293 1006.417007 775.5636381 877.1285487 917.3013876 0.799561171 0.676536753 0.78469737 0.909357313 0.792514136 1.027667833 1.09714977 0.845483991 0.956205409 1 9.841252012 -6.622051286 1.134946383 0.975579075 0.736949342 0.569555631 0.081689305 0.380886656 1.02271059 0.034506052 0.060106345 2.39E-07 6.622051286 -0.238629733 T(ph)SSLENHDQMS(ph)VNCRT(ph)LLS(ph)ES(ph)PGK ddPTM_K562_Paclitaxel_30min_R1 1 TSSLENHDQMSVNCRTLLSESPGK 24 1 Q9UPY3-3;Q9UPY3-2;Q9UPY3 Q9UPY3-3 DICER1 Endoribonuclease Dicer 5 T(0.436)S(0.436)S(0.132)LENHDQMS(0.999)VNCRT(0.999)LLS(0.999)ES(0.999)PGK 43.37 0.030814 0 0 0 0 0 0 0 0 79.255 138.59 119.27 TRUE FALSE 0 0 0 0 0 0 0 72.52179306 151.9021887 94.96270853 0 0 0 0 0 0 0 0.763687074 1.599598317 1 6.569289179 -8.432370195 3.098574658 1.290932262 2.52E-17 0.932185723 0.142889039 0.054050695 0.976936391 0.090132066 0.035396459 3.70E-09 8.432370195 -1.290932262 T(ph)SSPRSPPSSSEIFTPAHEENVR ddPTM_K562_Paclitaxel_30min_R1 2 TSSPRSPPSSSEIFTPAHEENVR 23 1 I3L3A7;I3L2L5;I3L317;I3L4Q0;C9JLW8 I3L3A7 FAM195B Protein FAM195B 1 T(0.307)S(0.307)S(0.307)PRS(0.066)PPS(0.004)S(0.004)S(0.004)EIFTPAHEENVR;T(0.634)S(0.132)S(0.036)PRS(0.171)PPS(0.021)S(0.004)S(0.002)EIFTPAHEENVR 138.46 4.42E-16 207271000 1738.19 1740.18 2354.7 1847.99 1711.9 1564.32 1206.58 1810 1839.18 1939.43 TRUE FALSE 1762.530023 1930.178737 1760.226862 1729.468193 1945.089763 1841.730188 1435.522256 1656.229202 2015.841457 1544.173101 1.141407023 1.249975625 1.139915506 1.119996321 1.259631942 1.192696717 0.92963817 1.072567059 1.305450441 1 10.59261877 T(ph)SSQTNAVHAK ddPTM_K562_Paclitaxel_30min_R1 1 TSSQTNAVHAK 11 0 A0A590UJ17;Q4G0S4 A0A590UJ17 CYP27C1 Cytochrome P450 27C1 1 T(0.959)S(0.014)S(0.025)QT(0.001)NAVHAK 95.428 0.013102 165540000 2098.2 2094.6 2009.3 2321.8 2295.9 2512.9 2427.3 2016.3 1692.6 2394 TRUE FALSE 2127.581274 2323.295511 1502.027364 2172.89014 2608.64045 2958.527532 2887.867504 1845.00273 1855.181793 1906.101486 1.116195171 1.218872934 0.788010174 1.139965608 1.368573746 1.552135368 1.515064924 0.967945696 0.973285949 1 10.89640922 -6.526401648 24.17641619 1.257941062 1.043006974 0.118334678 0.223130167 138.6946473 951799.7267 0.071637877 0.092999185 2.98E-07 6.526401648 -0.214934088 T(ph)SSTDEVLSLEEK ddPTM_K562_Paclitaxel_30min_R1 1 TSSTDEVLSLEEK 13 0 K7ENH8;A0A0A0MRB7;P15923-2;K7EMM4 K7ENH8 TCF3 Transcription factor E2-alpha 1 T(0.962)S(0.002)S(0.036)TDEVLSLEEK 156 0.0017196 9964800 1587 1407.8 2662.9 1799.5 1544.3 1357 1087.7 1668 1246.2 2660.6 TRUE FALSE 1609.222896 1561.508365 1990.617961 1684.088124 1754.659805 1597.644897 1294.085397 1526.292989 1365.903078 2118.36826 0.7596521 0.737127909 0.939694008 0.794993088 0.828307258 0.754186572 0.610887834 0.720504087 0.644790193 1 11.0487377 -7.45825582 5.453692419 0.715803756 0.812747215 0.058818331 0.110524026 0.421473694 24.76063112 0.038117884 0.032966864 3.48E-08 7.45825582 0.096943459 T(ph)T(ph)IQVLLDPMVK ddPTM_K562_Paclitaxel_30min_R1 1 TTIQVLLDPMVK 12 0 A0A0C4DG33;O43933-2;O43933 A0A0C4DG33 PEX1 Peroxisome biogenesis factor 1 2 T(1)T(1)IQVLLDPMVK 125.54 0.015224 115050000 2518.3 2426.7 2440 2180 2292.5 2084.5 1807.4 1754.5 1778.1 2179.5 TRUE FALSE 2553.56397 2691.655313 1823.991822 2040.184557 2604.777312 2454.156807 2150.344715 1605.444274 1948.89445 1735.316704 1.471526186 1.551103212 1.051100251 1.175684273 1.501038575 1.414241448 1.239165571 0.925159235 1.123077099 1 10.76098327 -8.070529071 4.385955197 1.021153225 1.352285283 0.515064083 0.149166272 0.205326261 7.517394538 0.078485249 0.044844402 8.50E-09 8.070529071 0.331132058 T(ph)T(ph)NVS(ph)LY(ph)PGYNFR ddPTM_K562_Paclitaxel_30min_R1 1 TTNVSLYPGYNFR 13 0 Q99572-7;Q99572-2;Q99572-4;Q99572-8;Q99572 Q99572-7 P2RX7 P2X purinoceptor 7 4 T(1)T(1)NVS(0.997)LY(0.835)PGY(0.168)NFR 95.183 0.004539 16248000 64.488 113.85 121.59 62.561 132.33 107.04 0 127.84 0 198.56 TRUE FALSE 65.39103096 126.280528 90.89310069 58.54861747 150.3555864 126.0220411 0 116.979194 0 158.093363 0.413622873 0.79877185 0.574933058 0.370342033 0.951055652 0.797136823 0 0.739937413 0 1 7.304632992 T(ph)T(ph)PAPGT(ph)AT(ph)SVK ddPTM_K562_Paclitaxel_30min_R1 2 TTPAPGTATSVK 12 0 P98088 P98088 MUC5AC Mucin-5AC 4 T(1)T(1)PAPGT(0.723)AT(0.671)S(0.607)VK;T(1)T(1)PAPGT(0.644)AT(0.713)S(0.644)VK 51.591 0.026029 4245600 0 0 49.708 0 0 0 0 0 0 0 TRUE FALSE 0 0 37.15860062 0 0 0 0 0 0 0 0 T(ph)T(ph)TS(ph)PS(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 TTTSPSK 7 0 B1B1J6 B1B1J6 FAM19A5 4 T(1)T(0.939)T(0.061)S(1)PS(1)K 83.287 0.020226 10759000 295.8 134.49 460.01 219.18 166.55 136.5 176.63 243.21 290.36 292.92 TRUE FALSE 299.9421126 149.174073 343.8747862 205.1227758 189.2369297 160.7063584 210.1446204 222.5477924 318.2503754 233.2227432 1.286075742 0.639620609 1.474447909 0.879514463 0.811399982 0.689068125 0.90104686 0.954228517 1.364576932 1 7.865564673 -11.67266928 15.52183944 1.000000159 0.980860703 0 0.270495457 1.45E-06 3.07E-08 0.25593509 0.062072862 2.12E-12 11.67266928 -0.019139456 T(ph)TRTPDTSTYCYETAEK ddPTM_K562_Paclitaxel_30min_R1 1 TTRTPDTSTYCYETAEK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 T(0.651)T(0.115)RT(0.234)PDTSTYCYETAEK 154.39 6.09E-07 24537000 1583.9 1291.4 3169.8 1806.1 1347.9 1248.1 1248.9 2118.9 1522.7 2512.4 TRUE FALSE 1606.079487 1432.399419 2369.544786 1690.26483 1531.5068 1469.433011 1485.872255 1938.886219 1668.962139 2000.371501 0.802890606 0.7160667 1.184552362 0.84497546 0.765611187 0.734580057 0.742798153 0.969263069 0.834326093 1 10.96605224 -9.337391646 1.155467475 0.998080588 0.839121309 0.109849704 0.133464281 2.92408933 6.588974006 0.133872836 0.04147766 4.60E-10 9.337391646 -0.15895928 T(ph)TSISPALAR ddPTM_K562_Paclitaxel_30min_R1 4 TTSISPALAR 10 0 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 T(0.974)T(0.008)S(0.003)IS(0.016)PALAR;T(0.86)T(0.001)S(0.001)IS(0.137)PALAR;T(0.634)T(0.004)S(0.047)IS(0.316)PALAR;T(0.991)T(0.006)S(0.001)IS(0.003)PALAR 166.86 0.0003632 1613520000 11030.9 10184.4 13082.8 11424.4 9163.8 9179.1 9552.5 11250.2 10031.2 11810.8 TRUE FALSE 11185.36663 11296.36723 9779.885334 10691.69012 10412.0647 10806.8845 11365.03701 10294.42529 10994.74158 9403.752477 1.189457789 1.201261652 1.039998166 1.136959968 1.107224454 1.1492098 1.208564032 1.094714617 1.169186621 1 13.19902085 -11.12425654 3.943075526 0.999951009 1.141990117 0.428495651 0.049861247 37529793.94 53949286.2 22357.83053 0.012567973 7.51E-12 11.12425654 0.142039108 T(ph)TSPPLSIPTTHLIHQPAGSR ddPTM_K562_Paclitaxel_30min_R1 2 TTSPPLSIPTTHLIHQPAGSR 21 0 Q5T5U3;A0A087WW76;A0A452Q6Z5;E7ESW5;A0A1B0GV73;Q5T5U3-3 Q5T5U3 ARHGAP21 Rho GTPase-activating protein 21 1 T(0.333)T(0.333)S(0.333)PPLS(0.001)IPTTHLIHQPAGSR;T(0.331)T(0.331)S(0.331)PPLS(0.007)IPTTHLIHQPAGSR 98.391 0.00078459 268060000 2268.7 2290.9 3349.1 2619.4 1889.74 2246.94 1815.63 2536.3 2389.7 2330.6 TRUE FALSE 2300.4688 2541.028209 2503.578284 2451.403408 2147.154582 2645.40326 2160.136314 2320.825484 2619.241362 1855.622441 1.239728917 1.36936704 1.349185173 1.32106799 1.157107467 1.42561504 1.164103358 1.25069919 1.411516322 1 10.85768748 -11.50119145 3.150562585 0.992054261 1.297126963 0.498248567 0.08991484 12546289.78 14489030.45 854327.3404 0.02141839 3.15E-12 11.50119145 0.305072702 T(ph)VFSPTLPAAR ddPTM_K562_Paclitaxel_30min_R1 1 TVFSPTLPAAR 11 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 T(0.999)VFS(0.001)PTLPAAR 196.16 7.46E-05 300290000 4182.5 3999.2 5243.3 4343.3 3866.1 3238.1 3521.2 4089.7 4094.6 4897.6 TRUE FALSE 4241.067904 4435.84618 3919.564067 4064.740178 4392.728274 3812.33157 4189.329318 3742.254458 4487.904625 3899.466432 1.087602106 1.137552088 1.005153945 1.042383682 1.126494701 0.977654671 1.074333987 0.959683722 1.150902233 1 11.92906102 -5.75523293 24.99957327 1.04251327 1.112577105 0.183702267 0.059440392 231.2046 931264.8802 0.014169223 0.035581486 1.76E-06 5.75523293 0.070063834 T(ph)VINDPLY(ph)KENAMK ddPTM_K562_Paclitaxel_30min_R1 1 TVINDPLYKENAMK 14 1 P06133-2;P06133 P06133-2 UGT2B4 UDP-glucuronosyltransferase 2B4 2 T(1)VINDPLY(1)KENAMK 58.098 0.027154 11589000 560.53 439.67 793.67 524.95 497.65 606.66 608.13 696.84 400.59 679.68 TRUE FALSE 568.3791494 487.6746575 593.2981925 491.2820566 565.4383553 714.2426331 723.5194928 637.6390925 439.0684594 541.1608429 1.050296149 0.901163977 1.096343537 0.907830016 1.044861916 1.319834283 1.336976801 1.178280175 0.811345583 1 9.079913643 -7.012215256 24.37585701 1.156625769 0.988568763 0.148071306 0.152632395 705.5847423 1408015.092 0.050570608 0.053262319 9.72E-08 7.012215256 -0.168057006 T(ph)VLIKTIET(ph)RNGEVVT(ph)ESQKEQR ddPTM_K562_Paclitaxel_30min_R1 1 TVLIKTIETRNGEVVTESQKEQR 23 3 P41219 P41219 PRPH Peripherin 3 T(0.858)VLIKT(0.311)IET(0.832)RNGEVVT(0.866)ES(0.134)QKEQR 42.355 0.02536 7048300 614.38 485.65 795.02 719.25 665.52 636.17 586.57 544.88 510.6 902.01 TRUE FALSE 622.9832155 538.6749094 594.3073683 673.1205242 756.1750913 748.9858172 697.8685954 498.589043 559.6454114 718.1798669 0.867447341 0.750055709 0.827518837 0.937258973 1.052904887 1.042894478 0.971718406 0.694239794 0.779255222 1 9.488201399 -6.190369529 4.935417778 0.924805058 0.805433925 0.176368906 0.109453822 0.430471285 19.95310899 0.034258017 0.060446716 6.45E-07 6.190369529 -0.119371133 T(ph)VRT(ph)TRKGEMPVS(ph)GLAVGS(ph)T(ph)LPSPR ddPTM_K562_Paclitaxel_30min_R1 1 TVRTTRKGEMPVSGLAVGSTLPSPR 25 3 Q3T8J9-3 Q3T8J9-3 GON4L GON-4-like protein 5 T(0.828)VRT(0.742)T(0.432)RKGEMPVS(0.685)GLAVGS(0.949)T(0.958)LPS(0.406)PR 43.349 0.022146 97988000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 T(ph)VS(ph)SGAKK ddPTM_K562_Paclitaxel_30min_R1 1 TVSSGAKK 8 1 O76090-4;O76090;O76090-3 O76090-4 BEST1 Bestrophin-1 2 T(1)VS(0.705)S(0.296)GAKK 76.1 0.030504 36829000 1756.7 1383 1207.5 1189.1 1216.3 1008.4 1795.5 2268.2 1938.2 2673.4 TRUE FALSE 1781.29922 1534.000617 902.6516908 1112.836448 1381.980652 1187.225581 2136.186752 2075.502252 2124.37277 2128.559613 0.836856628 0.720675431 0.424066907 0.522811972 0.649256259 0.557760081 1.00358324 0.975073585 0.998033016 1 11.05566178 -7.765303556 24.99984571 0.992095344 0.611413273 0.753694455 0.105138971 52.95160487 342572.4349 0.04653689 0.03271378 1.72E-08 7.765303556 -0.380682071 T(ph)VSFEALPIMR ddPTM_K562_Paclitaxel_30min_R1 2 TVSFEALPIMR 11 0 O15084-2;O15084;O15084-4;O15084-1 O15084-2 ANKRD28 Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit A 1 T(0.94)VS(0.06)FEALPIMR;T(0.993)VS(0.007)FEALPIMR 128.88 0.0027549 22868000 1423.47 1614.91 2420.8 2064.92 1537.06 1467.08 1571.83 1894.69 2062.99 1857.37 TRUE FALSE 1443.402972 1791.231335 1809.6391 1932.485273 1746.433595 1727.246039 1870.076537 1733.724258 2261.149407 1478.836974 0.976039277 1.211243272 1.223690732 1.306760182 1.180950723 1.167975963 1.264558954 1.17235658 1.529005189 1 10.5302473 -5.250377673 3.46005496 1.23613766 0.940356921 0.265099221 0.12619621 0.409351206 8.302849814 0.029906029 0.322799567 5.62E-06 5.250377673 -0.295780739 T(ph)VSPCQVQASCSQEENR ddPTM_K562_Paclitaxel_30min_R1 1 TVSPCQVQASCSQEENR 17 0 Q711Q0;Q711Q0-3 Q711Q0 C10orf71 Uncharacterized protein C10orf71 1 T(0.579)VS(0.407)PCQVQAS(0.013)CS(0.001)QEENR 93.768 0.011073 10755000 816.87 746.9 1313.5 930.77 748.85 818.43 556.33 1094.2 773.95 1123.9 TRUE FALSE 828.3087003 828.4490679 981.8906798 871.0745782 850.8560481 963.5670692 661.8907133 1001.24088 848.2913556 894.8485631 0.925641203 0.925798065 1.09727022 0.973432393 0.950838034 1.076793447 0.739667851 1.118894215 0.94797197 1 9.805499743 -11.1123579 0.005123111 1.520896787 0.455986569 0.005357833 0.103737125 280629.5376 263.4307758 28253.84258 26519.82945 7.72E-12 11.1123579 -1.064910219 T(ph)VSPPTVCTIPTVVGR ddPTM_K562_Paclitaxel_30min_R1 1 TVSPPTVCTIPTVVGR 16 0 A0A0C4DH56;Q9BWT3-2;Q9BWT3 A0A0C4DH56 PAPOLG Poly(A) polymerase gamma 1 T(1)VSPPTVCTIPTVVGR 213.51 2.16E-22 60415000 1029.9 961.74 1575.1 1193.8 1038.3 978.06 986.82 1282.7 1063.4 1240.8 TRUE FALSE 1044.321778 1066.746026 1177.446524 1117.235011 1179.734039 1151.505208 1174.063943 1173.726629 1165.544321 987.9242789 1.057086864 1.079785211 1.191838838 1.13089134 1.194154313 1.165580433 1.18841491 1.188073473 1.17979115 1 9.948256658 -5.669469693 5.60788264 1.163555698 1.06354618 0.268885994 0.055832105 0.212822677 10.16545043 0.013038565 0.035634205 2.14E-06 5.669469693 -0.100009517 T(ph)VSSDGCSTPSREEGGCSLASTPATTLHLLQLSGQR ddPTM_K562_Paclitaxel_30min_R1 1 TVSSDGCSTPSREEGGCSLASTPATTLHLLQLSGQR 36 1 A6NNK5;Q12888;Q12888-3;Q12888-2;C9JXV0 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 T(0.142)VS(0.126)S(0.126)DGCS(0.112)T(0.112)PS(0.112)REEGGCS(0.089)LAS(0.142)T(0.035)PAT(0.002)T(0.001)LHLLQLSGQR 54.904 0.0014868 10698000 240.49 393.27 588.79 491.32 344.59 314.47 367.03 626.08 373.18 589.58 TRUE FALSE 243.857602 436.2085486 440.1426824 459.8089343 391.528992 370.2368391 436.6720265 572.8905961 409.0256064 469.4232724 0.519483409 0.929243551 0.937624333 0.979518829 0.834063872 0.788705761 0.930230886 1.220413707 0.871336447 1 8.874745557 -5.260961786 5.500305766 0.943633326 0.503900756 0.569352712 0.110690325 0.114953395 13.53628091 0.029198712 0.190657762 5.48E-06 5.260961786 -0.439732569 T(ph)VT(ph)RS(ph)KY(ph)QR ddPTM_K562_Paclitaxel_30min_R1 1 TVTRSKYQR 9 2 A0A087X0N3;Q5W149 A0A087X0N3 NOL4L 4 T(1)VT(1)RS(1)KY(1)QR 68.355 0.019714 33050000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 T(ph)VY(ph)CEFLKK ddPTM_K562_Paclitaxel_30min_R1 1 TVYCEFLKK 9 1 B5MCY1 B5MCY1 TDRD15 Tudor domain-containing protein 15 2 T(1)VY(1)CEFLKK 58.676 0.025303 8682900 1006.6 1107.5 1144.9 1060.7 987.8 1178.7 1262.5 1503.2 1004 1355.3 TRUE FALSE 1020.695506 1228.420595 855.8558351 992.6714495 1122.355084 1387.725895 1502.052784 1375.493777 1100.438686 1079.089116 0.945886202 1.138386605 0.793128039 0.919916098 1.040094898 1.286016025 1.391963613 1.274680429 1.019784807 1 10.0755983 -7.084450192 4.179880811 1.222670028 0.953683203 0.410407662 0.137054262 0.2170497 6.900624585 0.047184485 0.048122106 8.23E-08 7.084450192 -0.268986825 T(ph)VY(ph)PDPR ddPTM_K562_Paclitaxel_30min_R1 1 TVYPDPR 7 0 H0YDH4;Q96Q83 H0YDH4 ALKBH3 Alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 2 T(1)VY(1)PDPR 106.76 0.017292 26740000 210.41 149.8 257.93 281.63 139.1 0 114.14 140.49 59.935 179.45 TRUE FALSE 213.3563892 166.1556706 192.8123815 263.5675123 158.047775 0 135.7974691 128.5544976 65.69202455 142.8779915 1.493276795 1.162919977 1.349489725 1.844703369 1.106172989 0 0.950443576 0.899750173 0.459777072 1 7.158639895 -7.005111598 24.98707286 0.660348821 1.438403552 0.591968209 0.313848367 160.4407435 784289.2813 0.097824692 0.107881589 9.88E-08 7.005111598 0.778054731 T(ph)Y(ph)HAY(ph)PDFAPQKFK ddPTM_K562_Paclitaxel_30min_R1 1 TYHAYPDFAPQKFK 14 1 Q9Y6X8 Q9Y6X8 ZHX2 Zinc fingers and homeoboxes protein 2 3 T(1)Y(1)HAY(1)PDFAPQKFK 63.682 0.021824 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 T(ph)YKPLMDRPK ddPTM_K562_Paclitaxel_30min_R1 1 TYKPLMDRPK 10 2 Q9BZE2;A0A087WY59 Q9BZE2 PUS3 tRNA pseudouridine(38/39) synthase;tRNA pseudouridine synthase 1 T(0.994)Y(0.006)KPLMDRPK 63.408 0.022402 0 820.25 683.54 1272.2 892.4 590.45 692.76 683.92 905.12 657.94 1284.2 TRUE FALSE 831.7360307 758.1712088 951.0173756 835.1654582 670.8792864 815.6112592 813.6902497 828.2244064 721.1380768 1022.479335 0.813450211 0.741502721 0.930109141 0.816804242 0.656129922 0.797679944 0.795801169 0.81001579 0.705283767 1 9.99785597 -11.07116081 6.504690256 1.000000194 0.786716872 0.460348124 0.06975345 1.99E-07 2.84E-08 0.068652605 0.016650687 8.49E-12 11.07116081 -0.213283322 T(ph)YLENPLTAATKAMMR ddPTM_K562_Paclitaxel_30min_R1 1 TYLENPLTAATKAMMR 16 1 Q8TE85-5;Q8TE85-2;Q8TE85 Q8TE85-5 GRHL3 Grainyhead-like protein 3 homolog 1 T(0.552)Y(0.448)LENPLTAATKAMMR 51.073 0.028368 32093000 2284.5 1778.2 1283.9 1956.8 1753.6 1965.8 1771.7 1945.9 2271.5 1876.4 TRUE FALSE 2316.490048 1972.349889 959.7635659 1831.299606 1992.470009 2314.407029 2107.870826 1780.583649 2489.687724 1493.98865 1.550540594 1.320190678 0.642416906 1.225778794 1.333658063 1.549146326 1.410901499 1.191832113 1.666470307 1 10.54495347 -6.733522563 4.205067928 1.38251553 1.150659194 0.084973646 0.272483108 0.453127512 17.82026181 0.085136367 0.106826238 1.85E-07 6.733522563 -0.231856336 T(ph)YSAPAINAIQVPKPFSGPVR ddPTM_K562_Paclitaxel_30min_R1 1 TYSAPAINAIQVPKPFSGPVR 21 1 Q9H4L5-6;Q9H4L5-2;Q9H4L5-8;Q9H4L5-4 Q9H4L5-6 OSBPL3 Oxysterol-binding protein-related protein 3 1 T(0.468)Y(0.063)S(0.468)APAINAIQVPKPFSGPVR 112.42 0.00033715 16010000 532.15 666.38 891.41 528.01 431.12 539.84 625.29 880.78 522.58 1127.5 TRUE FALSE 539.6017418 739.137622 666.3625207 494.1458019 489.8458429 635.5730443 743.9355133 805.9522413 572.7761439 897.7148811 0.601083655 0.823354539 0.742287484 0.550448491 0.545658597 0.707989873 0.828699099 0.897781978 0.638037929 1 9.8101135 -7.681095753 4.081714988 0.833408478 0.658761589 0.373628514 0.115048508 0.272196702 8.634729544 0.047865194 0.035586937 2.08E-08 7.681095753 -0.174646889 TAEIVY(ph)AATTSLR ddPTM_K562_Paclitaxel_30min_R1 1 TAEIVYAATTSLR 13 0 Q9NR09 Q9NR09 BIRC6 Baculoviral IAP repeat-containing protein 6 1 TAEIVY(0.983)AAT(0.017)TSLR 115.14 2.13E-06 0 722.08 537.8 532.81 383 411.81 654.1 440.2 547.61 493.99 528.84 TRUE FALSE 732.1913478 596.5188227 398.2955258 358.4360942 467.905494 770.095451 523.725652 501.0871124 541.4399467 421.0621177 1.738915274 1.416700286 0.945930562 0.851266545 1.111250512 1.828935491 1.243820401 1.190055081 1.285890903 1 8.717889274 -2.00008665 0.021347538 5.90E-06 2.897476675 0.081532809 0.29364832 11111.2262 18.31171621 903.2489753 1697.363754 0.009998005 2.00008665 2.89747078 TAENAT(ph)SGETLEENEAGD ddPTM_K562_Paclitaxel_30min_R1 1 TAENATSGETLEENEAGD 18 0 Q9UQ80;Q9UQ80-2 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 1 TAENAT(0.628)S(0.372)GETLEENEAGD 150.59 3.19E-09 8649600 1102.3 1100.9 1473.2 1239.3 891.03 988.69 1016.3 1069.8 986.67 1431.3 TRUE FALSE 1117.735601 1221.099985 1101.27244 1159.816845 1012.403371 1164.02029 1209.13762 978.9138125 1081.444062 1139.600274 0.980813734 1.07151605 0.9663673 1.017740054 0.888384633 1.02142858 1.061019067 0.858997523 0.948967885 1 10.15431216 -6.117867469 2.005582998 0.965778006 1.022860423 0.089284638 0.062316918 0.786752654 6.149090384 0.018928098 0.043722796 7.62E-07 6.117867469 0.057082417 TAENATS(ph)GETLEENEAGD ddPTM_K562_Paclitaxel_30min_R1 1 TAENATSGETLEENEAGD 18 0 Q9UQ80;Q9UQ80-2 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 1 TAENAT(0.346)S(0.654)GETLEENEAGD 136.63 1.29E-14 0 1573.1 1511.9 2319.6 1736.8 1467.8 1813.5 1253.1 1874.4 1713.6 1815.3 TRUE FALSE 1595.128253 1676.974355 1733.988292 1625.409422 1667.73921 2135.098762 1490.869183 1715.15802 1878.198937 1445.340864 1.103634647 1.160262189 1.199708896 1.12458553 1.153872593 1.477228532 1.031500057 1.18668064 1.299485114 1 10.49719406 -4.502817339 0.848058894 1.196584801 0.860170409 0.029838973 0.127317873 27.97017961 6.162790347 0.043638925 11.90505631 3.14E-05 4.502817339 -0.336414392 TAENATSGETLEENEAGD ddPTM_K562_Paclitaxel_30min_R1 2 TAENATSGETLEENEAGD 18 0 Q9UQ80;Q9UQ80-2 Q9UQ80 PA2G4 Proliferation-associated protein 2G4 0 ; 202.61 5.65E-15 25374000 6585.9 5842.6 8560.4 6532.1 6082.3 5353.9 5764 7297 6468.6 7720.2 FALSE TRUE 6678.122919 6480.514826 6399.221146 6113.160343 6910.812234 6303.338993 6857.68891 6677.074304 7089.937932 6146.819002 1.086435588 1.054287563 1.041062238 0.994524215 1.124290829 1.025463576 1.11564842 1.086264993 1.153432032 1 12.58562429 -7.769131003 24.99882523 1.09602511 1.054198039 0.101254924 0.04848522 344.4007961 1119337.041 0.019082083 0.013142826 1.70E-08 7.769131003 -0.041827071 TAFYNEDDS(ph)EEEQR ddPTM_K562_Paclitaxel_30min_R1 2 TAFYNEDDSEEEQR 14 0 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 TAFYNEDDS(1)EEEQR;TAFYNEDDS(1)EEEQR 239.7 8.05E-46 45428000 3345.9 3233.8 4400.1 3871.9 3101.9 3091.7 3204.9 3642.3 2380.5 3968.1 TRUE FALSE 3392.752923 3586.87722 3289.240335 3623.573664 3524.431296 3639.969585 3813.013044 3332.86388 2609.157661 3159.399042 1.073860211 1.135303636 1.041096833 1.146918644 1.115538509 1.152108213 1.206879218 1.054904378 0.82583986 1 11.62543445 -8.57511221 6.180124377 0.917012921 1.123932624 0.679039345 0.057510789 0.108986585 9.067240496 0.038437364 0.014217935 2.66E-09 8.57511221 0.206919703 TAFYNEDDS(ph)EEEQRQLLFEDTSLTFGTSSR ddPTM_K562_Paclitaxel_30min_R1 2 TAFYNEDDSEEEQRQLLFEDTSLTFGTSSR 30 1 Q8WWQ0 Q8WWQ0 PHIP PH-interacting protein 1 T(0.002)AFY(0.016)NEDDS(0.969)EEEQRQLLFEDT(0.005)S(0.006)LT(0.001)FGT(0.001)SSR;T(0.004)AFY(0.031)NEDDS(0.889)EEEQRQLLFEDT(0.023)S(0.027)LT(0.01)FGT(0.005)S(0.005)S(0.006)R 46.415 0.016438 42447800 884.88 577.54 778.75 672.7 557.998 827.69 460.011 607.67 910.7 863.24 TRUE FALSE 897.2710501 640.5977703 582.144931 629.5560329 634.0067746 974.4692002 547.2956858 556.0446405 998.1768041 687.3112142 1.305480009 0.932034509 0.846988844 0.915969389 0.922444973 1.41779907 0.79628511 0.809014358 1.452292329 1 9.424819688 TAHNSEAADLEESFNEHELEPS(ph)SPK ddPTM_K562_Paclitaxel_30min_R1 1 TAHNSEAADLEESFNEHELEPSSPK 25 0 Q5JRC6;A0A0D9SGE8;Q8IWS0-2 Q5JRC6 PHF6 PHD finger protein 6 1 TAHNSEAADLEES(0.264)FNEHELEPS(0.424)S(0.312)PK 64.383 0.0025092 30687000 1944.8 1497 3365.8 2057.4 1427.3 1359.7 1205.7 1801.4 1556.1 2551.8 TRUE FALSE 1972.0332 1660.447523 2516.062162 1925.447573 1621.722424 1600.823704 1434.475281 1648.359826 1705.570358 2031.741759 0.970612132 0.817253234 1.23837695 0.94768322 0.798193184 0.787907074 0.706032287 0.811303808 0.839462176 1 10.98850133 -6.670634267 4.677487793 0.806769187 1.004318321 0.330234756 0.11859588 0.229200199 8.746320087 0.035518877 0.045922804 2.13E-07 6.670634267 0.197549134 TAHNSEAADLEESFNEHELEPSS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 TAHNSEAADLEESFNEHELEPSSPK 25 0 Q5JRC6;A0A0D9SGE8;Q8IWS0-2 Q5JRC6 PHF6 PHD finger protein 6 1 TAHNSEAADLEES(0.034)FNEHELEPS(0.07)S(0.897)PK 111.95 4.89E-07 30155000 2242.4 1797.1 4678.2 2632.6 1572.5 1839 1523.9 2589.9 1864.5 3030.6 TRUE FALSE 2273.800518 1993.313455 3497.130551 2463.756819 1786.701123 2165.120829 1813.05207 2369.871829 2043.593556 2412.962056 0.942327507 0.826085702 1.449310212 1.021050792 0.740459684 0.897287557 0.751380265 0.982142186 0.846923204 1 11.23658951 -6.562744286 10.95880477 0.865618134 1.079050714 0.238992625 0.167774265 0.799011404 216.1162745 0.050278915 0.064978928 2.74E-07 6.562744286 0.21343258 TAHNSEADLEESFNEHELEPSS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 TAHNSEADLEESFNEHELEPSSPK 24 0 Q8IWS0-5;Q8IWS0 Q8IWS0-5 PHF6 PHD finger protein 6 1 TAHNSEADLEES(0.006)FNEHELEPS(0.234)S(0.761)PK;TAHNSEADLEESFNEHELEPS(0.167)S(0.833)PK 100.57 1.74E-05 125523000 6227.2 5226.7 10816.4 6751 5141.1 5010.5 3764.1 6549.2 4683.7 8377.1 TRUE FALSE 6314.400013 5797.368782 8085.666044 6318.021076 5841.40486 5899.041824 4478.318325 5992.804581 5133.590312 6669.842422 0.946709024 0.869191266 1.212272425 0.947251925 0.875793533 0.884434961 0.671427905 0.898492678 0.769671903 1 12.70343696 -6.783677768 2.792497931 0.83220908 1.005121037 0.280722152 0.114532355 0.325549941 5.202811313 0.036992226 0.045769703 1.65E-07 6.783677768 0.172911957 TAIHEVMEQGR ddPTM_K562_Paclitaxel_30min_R1 2 TAIHEVMEQGR 11 0 J3KQ69;A0A499FHX9;P25205;P25205-2 J3KQ69 MCM3 DNA replication licensing factor MCM3 0 ; 133.89 0.00093166 16189600 5103.1 4524.5 6457.2 5627 4368 4209.2 3863.2 5234.4 4356.5 5992.4 FALSE TRUE 5174.559144 5018.500211 4826.999998 5266.109406 4962.995551 4955.64252 4596.222033 4789.705048 4774.96129 4771.145591 1.084552765 1.051843863 1.011706708 1.103741084 1.04021046 1.038669314 0.9633372 1.003889937 1.000799745 1 12.22012 -7.590342926 5.117813893 0.99248509 1.056421683 0.603797653 0.02539963 0.146375543 7.339441114 0.009890212 0.007623362 2.57E-08 7.590342926 0.063936593 TALIHDGLAR ddPTM_K562_Paclitaxel_30min_R1 2 TALIHDGLAR 10 0 P25398 P25398 RPS12 40S ribosomal protein S12 0 ; 125.68 0.0034459 34558000 6166.3 6780.1 7341.9 5807.6 5527.4 5422.1 7194.4 8905.7 7774.7 9971.2 FALSE TRUE 6252.647225 7520.374247 5488.346542 5435.12653 6280.32546 6383.633305 8559.499843 8149.105197 8521.494673 7939.063967 0.787579902 0.94726208 0.691309021 0.684605459 0.791066237 0.804078835 1.078149751 1.026456674 1.073362642 1 12.95475321 -7.73367286 7.194528129 1.046882419 0.782429713 0.765274552 0.070595389 0.090609759 16.56519147 0.029466323 0.022240859 1.85E-08 7.73367286 -0.264452706 TALPT(ph)SGSSAGELELLAGEVPAR ddPTM_K562_Paclitaxel_30min_R1 1 TALPTSGSSAGELELLAGEVPAR 23 0 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 1 T(0.003)ALPT(0.302)S(0.302)GS(0.197)S(0.197)AGELELLAGEVPAR 81.316 0.0088884 0 1308.2 1059.6 1673.2 1413 1413.6 966.31 1085.1 1305.4 1166.6 1470.1 TRUE FALSE 1326.518836 1175.290711 1250.779966 1322.376504 1606.156252 1137.671511 1290.99206 1194.498122 1278.657143 1170.492813 1.133299429 1.004099041 1.068592607 1.129760465 1.372205138 0.971959416 1.102947447 1.02050872 1.092409221 1 10.19290036 -10.80416078 5.832731296 0.99999999 1.098747567 0.075532134 0.104430219 1.44E-08 3.17E-09 0.103276013 0.02504811 1.57E-11 10.80416078 0.098747577 TALPTSGS(ph)SAGELELLAGEVPAR ddPTM_K562_Paclitaxel_30min_R1 2 TALPTSGSSAGELELLAGEVPAR 23 0 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 1 TALPTS(0.045)GS(0.909)S(0.045)AGELELLAGEVPAR;TALPT(0.001)S(0.017)GS(0.676)S(0.305)AGELELLAGEVPAR 161.02 1.73E-18 47617000 4301.2 4576.8 5095.4 4037.4 3654.8 4291.5 4969.6 5142.2 4704.5 7351.7 TRUE FALSE 4361.43007 5076.510502 3809.003251 3778.459235 4152.645636 5052.537269 5912.555657 4705.338013 5156.388245 5853.419505 0.745108063 0.867272625 0.650731294 0.645513145 0.709439266 0.863177031 1.010102839 0.803861403 0.880918964 1 12.51506396 -7.358107685 4.314105572 0.910334601 0.723320706 0.586741298 0.079641724 0.187139008 6.052890228 0.030453042 0.02671656 4.38E-08 7.358107685 -0.187013895 TALPTSGSS(ph)AGELELLAGEVPAR ddPTM_K562_Paclitaxel_30min_R1 1 TALPTSGSSAGELELLAGEVPAR 23 0 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 1 TALPTSGS(0.035)S(0.965)AGELELLAGEVPAR 182.98 2.69E-23 48754000 1746.7 2040.6 2284.2 1830.5 2041.4 1580.5 1801.2 2048.5 1936.4 2247.5 TRUE FALSE 1771.159189 2263.399609 1707.525459 1713.099923 2319.473241 1860.779484 2142.968297 1874.467139 2122.399872 1789.458266 0.989773957 1.264851856 0.954213625 0.957328793 1.296187391 1.039856318 1.197551425 1.047505367 1.186057206 1 10.80530718 -5.761247976 25 1.091947507 1.127312818 0.016300919 0.12238973 32.36493774 4224271.662 0.030752217 0.071714871 1.73E-06 5.761247976 0.035365311 TALPTSGSSAGELELLAGEVPARS(ph)PGAFDMSGVR ddPTM_K562_Paclitaxel_30min_R1 3 TALPTSGSSAGELELLAGEVPARSPGAFDMSGVR 34 1 Q9Y6I3-3;Q9Y6I3;Q9Y6I3-1 Q9Y6I3-3 EPN1 Epsin-1 1 TALPTSGSSAGELELLAGEVPARS(0.994)PGAFDMS(0.006)GVR;TALPTSGSSAGELELLAGEVPARS(0.984)PGAFDMS(0.016)GVR;TALPTSGSSAGELELLAGEVPARS(0.912)PGAFDMS(0.087)GVR 74.381 3.84E-05 293429000 3404.8 2630.49 3472.83 3383.73 2305.7 2684.8 2706.63 3145.4 2858.73 3532.99 TRUE FALSE 3452.477705 2917.695794 2596.071115 3166.712703 2619.775376 3160.911584 3220.198913 2878.178637 3133.32379 2812.964699 1.227344839 1.037231571 0.922895021 1.12575629 0.93132181 1.12369401 1.144770467 1.023183348 1.113886638 1 11.45787573 TAMRVS(ph)PHHPAPTPNPR ddPTM_K562_Paclitaxel_30min_R1 1 TAMRVSPHHPAPTPNPR 17 1 A8MZI9;Q01196-7;Q01196-3;Q01196-4;Q01196-11;Q01196;Q01196-9;Q01196-10;Q01196-2;Q01196-8 A8MZI9 RUNX1 Runt-related transcription factor 1 1 T(0.313)AMRVS(0.687)PHHPAPTPNPR 65.784 0.020286 7057300 1345.3 1390.4 1773.1 1690.8 1549.1 1456.9 1228.5 1491.5 1607.3 1825.9 TRUE FALSE 1364.138351 1542.208574 1325.458976 1582.359656 1760.113646 1715.260759 1461.601462 1364.787765 1761.688347 1453.780578 0.938338544 1.060826233 0.911732483 1.088444625 1.21071479 1.179862206 1.005379687 0.938785252 1.211797966 1 10.50559382 -6.328777349 9.931773597 1.093440118 0.979426647 0.253992896 0.094102587 0.842459237 121.0589955 0.027651526 0.041046666 4.69E-07 6.328777349 -0.114013471 TANS(ph)PGSGARPDPVR ddPTM_K562_Paclitaxel_30min_R1 1 TANSPGSGARPDPVR 15 1 A0A3B3ISR7;E9PIF2;Q13206 A0A3B3ISR7 DDX10 Probable ATP-dependent RNA helicase DDX10 1 TANS(0.802)PGS(0.198)GARPDPVR 148.41 4.70E-05 7132200 2019.8 2008 2521.8 2067.3 1932.7 1594.7 1705.6 2071.3 1343.2 2205.9 TRUE FALSE 2048.083432 2227.240231 1885.140401 1934.712631 2195.966461 1877.497654 2029.228696 1895.330136 1472.220362 1756.336369 1.166111155 1.268117127 1.073336767 1.10156156 1.250310874 1.06898524 1.15537589 1.079138467 0.838233716 1 10.77835346 -8.585718862 4.820846314 0.922045027 1.152408234 0.622307746 0.072437016 0.130299073 5.979072774 0.051497005 0.018409684 2.60E-09 8.585718862 0.230363206 TAPAAPAEDAVAAAAAAPSEPS(ph)EPSRPSPQPKPR ddPTM_K562_Paclitaxel_30min_R1 1 TAPAAPAEDAVAAAAAAPSEPSEPSRPSPQPKPR 34 2 Q53GA4 Q53GA4 PHLDA2 Pleckstrin homology-like domain family A member 2 1 TAPAAPAEDAVAAAAAAPS(0.046)EPS(0.318)EPS(0.318)RPS(0.318)PQPKPR 97.059 1.49E-11 17331000 1425.9 1172 2751.2 1414.7 967.15 982.21 1057.8 1156 1177.1 1766.8 TRUE FALSE 1445.866999 1299.962923 2056.625534 1323.967474 1098.892204 1156.391153 1258.512028 1057.790584 1290.165714 1406.72519 1.027824773 0.924105812 1.461995241 0.941169948 0.781170488 0.822044818 0.894639576 0.751952543 0.917141261 1 10.4581248 -6.510161165 24.8617267 0.849628312 1.13075405 0.423860464 0.143945195 514.6769466 1006147.713 0.040558152 0.056960337 3.09E-07 6.510161165 0.281125738 TAPPALPT(ph)GYDSEEEEESRPMSYDEK ddPTM_K562_Paclitaxel_30min_R1 1 TAPPALPTGYDSEEEEESRPMSYDEK 26 1 A0A0G2JHN8;A0A140T9I1;H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440-4;P25440-3;P25440;P25440-2 A0A0G2JHN8 BRD2 Bromodomain-containing protein 2 1 TAPPALPT(0.354)GY(0.291)DS(0.354)EEEEESRPMS(0.001)Y(0.001)DEK 78.378 0.00084667 26914000 990.49 836.34 1698.2 921.45 797.25 958.2 634.23 917.62 786.66 1310.8 TRUE FALSE 1004.359916 927.6544295 1269.468407 862.3523213 905.8489476 1128.123316 754.5718316 839.6624534 862.2222079 1043.65824 0.9623456 0.888848853 1.216364091 0.826278458 0.867955536 1.080931738 0.723006634 0.804537751 0.826153787 1 10.02743364 -7.250397473 1.031785864 0.840421983 0.985603639 0.118059115 0.131251597 0.992080215 2.22441144 0.073474304 0.067336217 5.62E-08 7.250397473 0.145181656 TAPPALPTGYDS(ph)EEEEESRPMSYDEK ddPTM_K562_Paclitaxel_30min_R1 1 TAPPALPTGYDSEEEEESRPMSYDEK 26 1 A0A0G2JHN8;A0A140T9I1;H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440-4;P25440-3;P25440;P25440-2 A0A0G2JHN8 BRD2 Bromodomain-containing protein 2 1 TAPPALPT(0.312)GY(0.312)DS(0.364)EEEEES(0.003)RPMS(0.004)Y(0.004)DEK 60.939 0.0034858 21225000 1212.7 929.5 2049.4 1560.9 986.43 862.79 821.2 1321.8 886.91 1759 TRUE FALSE 1229.681541 1030.985953 1532.003623 1460.79086 1120.798466 1015.793692 977.018413 1209.50484 972.1016683 1400.514834 0.878021076 0.736147828 1.093886038 1.043038477 0.800276041 0.725300202 0.697613755 0.863614444 0.694103086 1 10.45174155 -6.901081291 8.407133804 0.779439716 0.934167806 0.232758362 0.123446972 0.365773739 27.79505429 0.039088417 0.04438009 1.26E-07 6.901081291 0.154728091 TAPPALPTGYDS(ph)EEEEESRPMSYDEKR ddPTM_K562_Paclitaxel_30min_R1 1 TAPPALPTGYDSEEEEESRPMSYDEKR 27 2 A0A0G2JHN8;A0A140T9I1;H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440-4;P25440-3;P25440;P25440-2 A0A0G2JHN8 BRD2 Bromodomain-containing protein 2 1 TAPPALPT(0.223)GY(0.154)DS(0.622)EEEEESRPMSYDEKR 73.153 0.0012453 37973000 1419 1187.4 2171.3 1595.8 1209.7 1114.9 896.8 1466.1 1353.8 1842.8 TRUE FALSE 1438.870378 1317.044348 1623.128461 1493.452531 1374.48162 1312.611861 1066.963118 1341.545654 1483.838539 1467.236348 0.980667075 0.897636123 1.106248807 1.017867729 0.936782695 0.894615147 0.727192398 0.914335073 1.01131528 1 10.51888557 -6.964366044 3.693339526 0.894009423 1.000247203 0.185795334 0.087065225 0.35813601 10.41979584 0.029978156 0.033292555 1.09E-07 6.964366044 0.10623778 TAPPALPTGYDSEEEEES(ph)RPMSYDEKR ddPTM_K562_Paclitaxel_30min_R1 1 TAPPALPTGYDSEEEEESRPMSYDEKR 27 2 A0A0G2JHN8;A0A140T9I1;H0Y6K2;A0A140T9E9;A0A0G2JK44;P25440-4;P25440-3;P25440;P25440-2 A0A0G2JHN8 BRD2 Bromodomain-containing protein 2 1 TAPPALPT(0.084)GY(0.076)DS(0.139)EEEEES(0.558)RPMS(0.076)Y(0.068)DEKR 74.584 0.0010198 45341000 2319.5 1902.4 3410.2 2356.3 1670.4 1613.7 1542.9 2246.9 1953.7 2946.3 TRUE FALSE 2351.980156 2110.110466 2549.252833 2205.177464 1897.93676 1899.867038 1835.657221 2056.01182 2141.361614 2345.842443 1.002616422 0.899510737 1.08671102 0.940036477 0.809064038 0.809886889 0.782515137 0.876449238 0.912832667 1 11.1958904 -6.573665859 5.843096845 0.852962222 0.99095187 0.395881902 0.072278042 0.178182976 13.53984159 0.021193273 0.02772985 2.67E-07 6.573665859 0.137989648 TAPPAS(ph)PEAR ddPTM_K562_Paclitaxel_30min_R1 2 TAPPASPEAR 10 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 TAPPAS(1)PEAR;TAPPAS(1)PEAR 128.88 0.0010896 48562000 3627.2 3290.4 4654.9 4385.4 3508.1 3362.2 3222.6 4388.3 4246.5 4669.5 TRUE FALSE 3677.991991 3649.656999 3479.712924 4104.140072 3985.962613 3958.438962 3834.071527 4015.486524 4654.395299 3717.853337 0.989278397 0.981657066 0.935946797 1.103900477 1.072114 1.064710897 1.031259488 1.080055118 1.251903956 1 11.86025414 -6.266351815 24.965402 1.08583214 0.970230383 0.415870384 0.063708771 396.5653358 2015379.649 0.017858018 0.027455516 5.42E-07 6.266351815 -0.115601757 TAPSS(ph)PLTSPSDTR ddPTM_K562_Paclitaxel_30min_R1 2 TAPSSPLTSPSDTR 14 0 A0A087WVA8;Q8IWB9;Q8IWB9-2 A0A087WVA8 TEX2 Testis-expressed sequence 2 protein 1 TAPS(0.045)S(0.831)PLT(0.094)S(0.028)PS(0.002)DTR;TAPS(0.126)S(0.827)PLT(0.046)S(0.001)PS(0.001)DTR 181.76 2.73E-06 63325000 2207.5 2273.72 3363 2609.4 2342.7 2133.3 1882.72 2143.96 1816.89 2528.1 TRUE FALSE 2238.411811 2521.972439 2513.969057 2442.044763 2661.815402 2511.610802 2239.956292 1961.817216 1991.410403 2012.871832 1.112048852 1.252922515 1.248946414 1.213214237 1.322396866 1.247774827 1.112816154 0.974635933 0.989337905 1 10.9750396 -8.007386994 2.861276674 0.987068386 1.237543552 0.82838383 0.049966838 0.105936237 1.747456408 0.026388658 0.015018173 9.83E-09 8.007386994 0.250475166 TAPTALGITLSS(ph)SPTSTPELR ddPTM_K562_Paclitaxel_30min_R1 2 TAPTALGITLSSSPTSTPELR 21 0 F5H1U9;O75970-5;O75970-3;O75970-2;O75970 F5H1U9 MPDZ Multiple PDZ domain protein 1 TAPTALGITLS(0.011)S(0.476)S(0.476)PT(0.013)S(0.021)T(0.003)PELR;TAPTALGITLS(0.002)S(0.943)S(0.055)PTSTPELR 252.77 1.02E-92 24392000 1267.82 1456.22 1563.31 1449.41 1271.33 1126.63 1177.23 1576.86 1251.37 2253.6 TRUE FALSE 1285.573392 1615.215024 1168.633056 1356.45133 1444.50667 1326.422012 1400.603247 1442.895901 1371.56968 1794.315083 0.716470259 0.900184722 0.651297571 0.755971648 0.805046273 0.739235837 0.780578205 0.804148566 0.764397342 1 10.80921754 -13.8196088 0.370741445 2.116918659 0.763667922 0.565600627 0.061036624 147.2790141 2.69297645 128.0760078 0.04151159 1.51E-14 13.8196088 -1.353250737 TAPTLS(ph)PEHWK ddPTM_K562_Paclitaxel_30min_R1 4 TAPTLSPEHWK 11 0 Q96JM3 Q96JM3 CHAMP1 Chromosome alignment-maintaining phosphoprotein 1 1 TAPT(0.016)LS(0.984)PEHWK;TAPT(0.004)LS(0.996)PEHWK;T(0.002)APT(0.086)LS(0.912)PEHWK;T(0.002)APT(0.047)LS(0.951)PEHWK 128.57 0.0012075 181604000 6519.8 5892.4 10338.8 7344.6 5562.64 4924.45 5522.52 7206.1 6660.52 9201.2 TRUE FALSE 6611.097315 6535.752159 7728.642071 6873.550229 6320.365744 5797.732065 6570.389341 6593.896826 7300.292706 7325.990389 0.90241687 0.892132232 1.054962082 0.938241775 0.862731919 0.791392256 0.896860218 0.900068998 0.996492258 1 12.83880809 -8.764104691 23.73024463 0.998246252 0.90509131 0.265764486 0.062093649 57.03825428 507735.292 0.057222953 0.017429017 1.72E-09 8.764104691 -0.093154942 TAQEKDSLITPHVS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 TAQEKDSLITPHVSR 15 1 P49792;Q99666;O14715;Q7Z3J3;P0DJD1;P0DJD0;F8VYC4;A0A1W2PNU4;A0A286YES2;J3KQ37;H7BZ48;J3KNE0;A6NKT7 P49792;J3KNE0 RANBP2;RGPD5;RGPD8;RGPD4;RGPD2;RGPD1;RGPD6;RGPD3 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 1;RanBP2-like and GRIP domain-containing protein 3 1 TAQEKDSLITPHVS(1)R 79.92 0.019289 41516000 1747.3 1247.5 2677.1 1688.8 1353.5 1472 1049.8 1898.5 1789.7 2607.7 TRUE FALSE 1771.767591 1383.706269 2001.232995 1580.487927 1537.869615 1733.038532 1248.99407 1737.210575 1961.608682 2076.249309 0.853350117 0.666445144 0.963869313 0.761222614 0.740696027 0.834696741 0.601562666 0.836706155 0.944784749 1 11.01976397 -8.743521269 3.256292566 0.988546399 0.775191992 0.404988843 0.094885895 0.230425044 4.678990388 0.082655652 0.023913177 1.81E-09 8.743521269 -0.213354407 TAQEVETYRR ddPTM_K562_Paclitaxel_30min_R1 1 TAQEVETYRR 10 1 J3KTA4;P17844-2;P17844;J3QR02;J3KRX8;J3KTQ4;J3QRQ7 J3KTA4 DDX5 Probable ATP-dependent RNA helicase DDX5 0 137.01 0.0015826 15984000 801.65 812.71 995.46 1092.6 793.53 658.93 789.08 1049.5 942.03 1217.1 FALSE TRUE 812.8755733 901.4444262 744.1438113 1022.525526 901.6222206 775.7819837 938.8038107 960.3384242 1032.516191 969.0543519 0.83883383 0.930231028 0.767907197 1.055178715 0.9304145 0.800555699 0.968783442 0.991005739 1.06548842 1 9.920433775 -7.990036508 23.78224987 1.012927196 0.892601367 0.374347518 0.077200747 130.9431306 312551.576 0.032570238 0.021924172 1.02E-08 7.990036508 -0.120325829 TAQVPS(ph)PPR ddPTM_K562_Paclitaxel_30min_R1 1 TAQVPSPPR 9 0 S4R3H4;E7EQT4;Q9UKV3-5;Q9UKV3;G3V3B0;Q9UKV3-3;Q9UKV3-2 S4R3H4 ACIN1 Apoptotic chromatin condensation inducer in the nucleus 1 TAQVPS(1)PPR 89.266 0.017646 40584000 1558.1 1335.8 2052 1481.5 1397.9 1230.6 1324.5 1445.1 956.52 2017.8 TRUE FALSE 1579.918207 1481.647161 1533.947221 1386.483221 1588.317647 1448.829632 1575.816961 1322.329735 1048.39802 1606.571252 0.983409982 0.922241799 0.954795636 0.863007613 0.98863816 0.901814737 0.980857188 0.823075686 0.652568642 1 10.64976925 -8.352967566 5.88416379 0.799657202 0.93881492 0.26235794 0.087107594 0.259242092 13.40941189 0.045223334 0.02124959 4.44E-09 8.352967566 0.139157719 TARPGGGTPLLNGAGPGAARQS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 TARPGGGTPLLNGAGPGAARQSPR 24 2 P51798 P51798 CLCN7 H(+)/Cl(-) exchange transporter 7 1 TARPGGGTPLLNGAGPGAARQS(1)PR;TARPGGGTPLLNGAGPGAARQS(1)PR 121.47 5.61E-08 45661000 749.82 732.91 1001.78 642.2 603.54 787.75 694.67 1021.52 575.11 932.96 TRUE FALSE 760.3197934 812.9315923 748.8682491 601.0121664 685.752366 927.4464019 826.4800061 934.7354999 630.3518852 742.8222399 1.023555506 1.094382409 1.008139241 0.809092854 0.92317156 1.248544204 1.112621515 1.258356912 0.848590485 1 9.5368732 -7.235044299 24.95403775 1.110957394 0.971479952 0.173748683 0.130258024 1208.137267 1142179.698 0.043559778 0.043547582 5.82E-08 7.235044299 -0.139477441 TAS(ph)DTDSSYCIPTAGMSPSR ddPTM_K562_Paclitaxel_30min_R1 1 TASDTDSSYCIPTAGMSPSR 20 0 Q13480-2;B7Z3B9;Q13480 Q13480-2 GAB1 GRB2-associated-binding protein 1 1 T(0.053)AS(0.824)DT(0.067)DS(0.02)S(0.031)Y(0.002)CIPT(0.003)AGMSPSR 93.753 0.00094113 7623800 177.55 251.1 427.53 290.47 218.53 242.18 291.75 258.78 220.58 337.41 TRUE FALSE 180.0362478 278.5159472 319.5947639 271.8405543 248.2974857 285.1272226 347.1080395 236.7950237 241.7676946 268.6456568 0.67016251 1.036740927 1.189651706 1.011892608 0.924256467 1.061350576 1.292066448 0.881439985 0.899950133 1 8.069560704 -5.261692732 9.093598246 1.03924518 0.668626164 0.445896404 0.12118029 0.076447149 135.0847188 0.031389058 0.1766275 5.47E-06 5.261692732 -0.370619016 TAS(ph)ELLLDR ddPTM_K562_Paclitaxel_30min_R1 5 TASELLLDR 9 0 Q92508 Q92508 PIEZO1 Piezo-type mechanosensitive ion channel component 1 1 T(0.004)AS(0.996)ELLLDR;T(0.078)AS(0.922)ELLLDR;TAS(1)ELLLDR;TAS(1)ELLLDR;T(0.002)AS(0.998)ELLLDR 149.94 0.00023009 73387100 9501.3 8512.78 12363.6 10090.5 8604.85 7810.68 7692.35 10009.5 9770.4 10536.7 TRUE FALSE 9634.347514 9442.234109 9242.256269 9443.340493 9776.976251 9195.794431 9151.933256 9159.130498 10708.89058 8389.314756 1.148406967 1.125507194 1.101669986 1.125639074 1.165408205 1.09613177 1.090903551 1.091761457 1.27649169 1 13.03433726 -10.33939658 17.6514799 0.999999889 1.131258262 0.370169457 0.052835152 0 0 0.049704365 0.012055079 4.58E-11 10.33939658 0.131258373 TAS(ph)GDYIDSSWELR ddPTM_K562_Paclitaxel_30min_R1 1 TASGDYIDSSWELR 14 0 F5H1C6;Q86UX7-2;Q86UX7 F5H1C6 FERMT3 Fermitin family homolog 3 1 T(0.003)AS(0.997)GDYIDSSWELR 89.26 0.015771 12555000 633.03 619.39 742.4 726.17 401.12 729.39 517.99 735.41 633.32 884.14 TRUE FALSE 641.8943731 687.0170948 554.9719381 679.5967064 455.759335 858.7370754 616.2758984 672.9323302 694.1532157 703.9517827 0.911844233 0.975943398 0.788366408 0.965402352 0.647429762 1.219880532 0.875451861 0.95593526 0.986080628 1 9.459332804 -7.260272396 24.99864198 0.996464487 0.866481713 0.276138985 0.120096807 165.2224821 3539355.998 0.039413779 0.037344721 5.49E-08 7.260272396 -0.129982775 TAS(ph)LTSAASVDGNR ddPTM_K562_Paclitaxel_30min_R1 4 TASLTSAASVDGNR 14 0 G3V578;H0YJT9;A0A0A0MS87;Q9UN36-4;Q9UN36-5;Q9UN36-2;Q9UN36-3;Q9UN36-6;Q9UN36 G3V578 NDRG2 Protein NDRG2 1 T(0.005)AS(0.871)LT(0.122)S(0.001)AAS(0.001)VDGNR;T(0.013)AS(0.974)LT(0.013)SAASVDGNR;T(0.397)AS(0.601)LT(0.002)SAASVDGNR;T(0.001)AS(0.475)LT(0.475)S(0.049)AASVDGNR 222.56 5.87E-67 174034000 3002.79 2466.48 4163.97 3390.7 2364 2794.9 2982.95 3881.55 3406.13 4126.89 TRUE FALSE 3044.838324 2735.778627 3112.724274 3173.235678 2686.016823 3290.536273 3548.94919 3551.7881 3733.304005 3285.827553 0.926657981 0.832599576 0.94731821 0.965734089 0.817455201 1.001433039 1.080077738 1.080941724 1.136183791 1 11.68204105 -7.521604002 4.095624618 1.078931836 0.900593556 0.708301645 0.053386784 0.114660187 4.507581683 0.020315613 0.016382655 3.01E-08 7.521604002 -0.17833828 TAS(ph)PLPLRPDAPVEK ddPTM_K562_Paclitaxel_30min_R1 1 TASPLPLRPDAPVEK 15 1 H0YJG4;Q9HCK8-2;Q9HCK8 H0YJG4 CHD8 Chromodomain-helicase-DNA-binding protein 8 1 T(0.076)AS(0.924)PLPLRPDAPVEK 119.96 0.0020347 11516000 996.15 865.96 1771.2 1133.3 876.1 1079.3 664.01 1064.2 790.49 1390.8 TRUE FALSE 1010.099173 960.5084413 1324.038654 1060.61521 995.4396525 1270.698701 790.0024311 973.7895675 866.4200965 1107.354197 0.912173518 0.867390438 1.195677642 0.957792199 0.898935188 1.147508814 0.713414401 0.879384004 0.782423636 1 10.11290104 -7.768857996 24.99999619 0.83375421 0.99355586 0.278172239 0.120068303 223.5648078 753382.5113 0.048576708 0.033479709 1.70E-08 7.768857996 0.159801651 TAS(ph)PPALPK ddPTM_K562_Paclitaxel_30min_R1 1 TASPPALPK 9 0 Q13029-5;Q13029-3;Q13029-2;Q13029 Q13029-5 PRDM2 PR domain zinc finger protein 2 1 T(0.153)AS(0.847)PPALPK 82.831 0.030116 24067000 4005.8 3046.4 6657.1 4694.6 3327.6 3196.1 2710.3 4275.4 3698.7 4976.7 TRUE FALSE 4061.893559 3379.016254 4976.432771 4393.509368 3780.875457 3762.88346 3224.565276 3912.178084 4053.976661 3962.445808 1.025097567 0.852760244 1.255899263 1.108787244 0.954177203 0.949636573 0.813781546 0.987313965 1.023099585 1 11.95217549 -6.818499801 8.89508183 0.946436709 1.059630783 0.19023837 0.106302457 0.528819076 76.35792737 0.034806892 0.039583342 1.52E-07 6.818499801 0.113194075 TAS(ph)PPGPPPYGK ddPTM_K562_Paclitaxel_30min_R1 2 TASPPGPPPYGK 12 0 P54259 P54259 ATN1 Atrophin-1 1 T(0.088)AS(0.912)PPGPPPYGK;T(0.012)AS(0.988)PPGPPPYGK 100.69 0.0095849 24946000 5013.4 3799.7 8191 5306.8 4410.9 3733.1 3275.4 5430 4127.6 6256.9 TRUE FALSE 5083.603068 4214.564096 6123.080745 4966.4456 5011.739257 4395.11287 3896.890051 4968.687607 4524.074423 4981.740346 1.020447216 0.846002361 1.229104755 0.996929839 1.006021773 0.88224447 0.782234677 0.997379884 0.908131317 1 12.28243411 -7.182965377 5.085503656 0.905781191 1.022037706 0.204600434 0.103782344 0.357496496 16.52354902 0.035094379 0.034952799 6.56E-08 7.182965377 0.116256515 TAS(ph)PPPPPK ddPTM_K562_Paclitaxel_30min_R1 3 TASPPPPPK 9 0 A9Z1X7;Q8IYB3-2;Q8IYB3;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 T(0.001)AS(0.999)PPPPPK;T(0.01)AS(0.99)PPPPPK;T(0.003)AS(0.997)PPPPPK 98.943 0.011606 217016000 9699.3 8028.8 16382.4 10651.1 8510.8 7881.1 6731.6 10583.5 9332.2 13055.7 TRUE FALSE 9835.120125 8905.411536 12246.46051 9967.986119 9670.115049 9278.702429 8008.885959 9684.365615 10228.59951 10394.94117 0.946144856 0.856706295 1.178117346 0.95892665 0.930271262 0.892617118 0.77045996 0.931642176 0.983997825 1 13.34359397 -6.766815653 3.486131952 0.904236777 0.991503211 0.103112556 0.09493305 0.48128792 12.35439355 0.031033756 0.038252397 1.71E-07 6.766815653 0.087266433 TAS(ph)PPPPPKR ddPTM_K562_Paclitaxel_30min_R1 2 TASPPPPPKR 10 1 A9Z1X7;Q8IYB3-2;Q8IYB3;E9PCT1;M0R088 A9Z1X7 SRRM1 Serine/arginine repetitive matrix protein 1 1 T(0.416)AS(0.584)PPPPPKR;T(0.155)AS(0.845)PPPPPKR 93.839 0.0085404 128329000 7899.5 6298.5 13457.9 8988.9 7278.7 5981.8 5769.1 8329.3 7839.3 10274.9 TRUE FALSE 8010.117372 6986.19153 10060.2867 8412.392187 8270.182169 7042.588241 6863.756608 7621.673975 8592.299792 8180.86974 0.979127847 0.853966846 1.229733148 1.028300469 1.010917229 0.860860577 0.839000843 0.931645927 1.050291725 1 12.99803851 -7.111951269 7.165500785 0.926214936 1.024772518 0.139760135 0.102975949 0.502706834 28.68832501 0.035564467 0.035636386 7.73E-08 7.111951269 0.098557582 TAS(ph)QEGCQELTQEQR ddPTM_K562_Paclitaxel_30min_R1 1 TASQEGCQELTQEQR 15 0 A0A0C4DG33;O43933-2;O43933 A0A0C4DG33 PEX1 Peroxisome biogenesis factor 1 1 TAS(1)QEGCQELTQEQR 154.81 5.22E-05 26000000 988.39 888.12 1634.3 1570.1 887.01 865.93 1034.4 1366.7 930.21 1407.1 TRUE FALSE 1002.230509 985.087945 1221.700752 1469.400814 1007.835779 1019.490527 1230.672 1250.590304 1019.560827 1120.332248 0.894583291 0.879281969 1.090480752 1.311575933 0.899586512 0.909989451 1.09848842 1.116267346 0.9100522 1 10.12971093 -5.753759812 24.81133167 1.048043913 0.886932536 0.21321275 0.118749628 242.8829315 784691.6698 0.031768493 0.080695971 1.76E-06 5.753759812 -0.161111377 TASDTDSSYCIPTAGMS(ph)PSR ddPTM_K562_Paclitaxel_30min_R1 3 TASDTDSSYCIPTAGMSPSR 20 0 Q13480-2;B7Z3B9;Q13480 Q13480-2 GAB1 GRB2-associated-binding protein 1 1 TASDTDSSYCIPTAGMS(0.999)PS(0.001)R;TASDTDSSYCIPTAGMS(0.889)PS(0.111)R;TASDTDSSYCIPT(0.003)AGMS(0.805)PS(0.192)R 280.63 1.20E-274 64855000 1514.54 2031.84 2112.15 1976.14 2049.04 1623.49 1480.73 2230.58 1212.48 2571.59 TRUE FALSE 1535.748233 2253.683162 1578.91161 1849.399225 2328.153939 1911.393157 1761.690788 2041.078306 1328.944122 2047.498546 0.750060719 1.100700739 0.771141749 0.903248126 1.137072328 0.933526014 0.860411252 0.996864349 0.649057419 1 10.99964671 -8.934394929 0.003501362 1.064960973 0.770837631 0 0.148265615 1177294.344 2913.068162 122841.8992 121841.1973 1.16E-09 8.934394929 -0.294123342 TASISSS(ph)PSEGTPTVGSYGCTPQSLPK ddPTM_K562_Paclitaxel_30min_R1 1 TASISSSPSEGTPTVGSYGCTPQSLPK 27 0 Q6PKG0;Q6PKG0-3 Q6PKG0 LARP1 La-related protein 1 1 T(0.006)AS(0.001)IS(0.029)S(0.134)S(0.828)PS(0.001)EGTPTVGSYGCTPQSLPK 179.86 9.05E-41 18886000 10789 9480.9 23519 14926 11576 9791.3 8239.8 12335 10739 12888 TRUE FALSE 10940.07929 10516.05672 17581.33757 13968.71317 13152.84718 11527.64958 9803.259035 11287.06476 11770.52893 10261.41853 1.066137129 1.024815107 1.713343777 1.36128481 1.281776701 1.123397272 0.955351252 1.099951701 1.147066451 1 13.32494256 -7.325798533 3.464161278 1.057361532 1.304228934 0.280218227 0.181608321 0.357537355 8.528414445 0.072252641 0.064328316 4.72E-08 7.325798533 0.246867402 TASLTSAAS(ph)VDGNR ddPTM_K562_Paclitaxel_30min_R1 3 TASLTSAASVDGNR 14 0 G3V578;H0YJT9;A0A0A0MS87;Q9UN36-4;Q9UN36-5;Q9UN36-2;Q9UN36-3;Q9UN36-6;Q9UN36 G3V578 NDRG2 Protein NDRG2 1 TASLTSAAS(1)VDGNR;TASLT(0.014)S(0.031)AAS(0.954)VDGNR;TASLTS(0.002)AAS(0.998)VDGNR 180.85 2.93E-06 35643000 3037.05 2824.18 3841.5 3289.69 2437.31 2528.19 2461 2359.44 2172.1 3052.96 TRUE FALSE 3079.57807 3132.533523 2871.665814 3078.704008 2769.312886 2976.528999 2927.961903 2158.990845 2380.73991 2430.765076 1.266917194 1.288702703 1.181383525 1.266557611 1.139276236 1.224523517 1.204543348 0.888193954 0.979419991 1 11.24719475 -8.233832512 9.864540674 0.950385478 1.223822939 0.861369762 0.049380745 0.164677904 57.99717244 0.023428261 0.013336525 5.84E-09 8.233832512 0.273437462 TASLTSAASVDGNRS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 TASLTSAASVDGNRSR 16 1 G3V578;H0YJT9;A0A0A0MS87;Q9UN36-4;Q9UN36-5;Q9UN36-2;Q9UN36-3;Q9UN36-6;Q9UN36 G3V578 NDRG2 Protein NDRG2 1 TASLTSAASVDGNRS(1)R;TASLTSAASVDGNRS(1)R 203.53 6.00E-14 21314000 3743.1 3540.3 5302.7 4135.3 3866.6 4137.6 3186.2 4043.3 3349.1 4443.3 TRUE FALSE 3795.514948 3926.841927 3963.967802 3870.080367 4393.296382 4871.345265 3790.764817 3699.796428 3670.796019 3537.753021 1.072860351 1.10998193 1.120476127 1.093937407 1.241832416 1.376960245 1.071517654 1.045804047 1.037606638 1 11.78861762 -7.982037073 24.99990357 1.036755276 1.169285468 0.37341576 0.084083187 294.4213989 409760.2026 0.039047378 0.026320311 1.04E-08 7.982037073 0.132530192 TAST(ph)PTPPQTGGGLEPQANGETPQVAVIVRPDDR ddPTM_K562_Paclitaxel_30min_R1 1 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR 34 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6;C9JSU8;C9J556;C9JF13;C9K073;C9J2Z7;C9J6B6;C9JWW9;C9JWH7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 T(0.018)AS(0.159)T(0.514)PT(0.172)PPQT(0.133)GGGLEPQANGET(0.004)PQVAVIVRPDDR 49.356 0.026344 262570000 831.44 597.99 1089.6 784.81 805.53 738.42 658.69 810.4 670.84 841.28 TRUE FALSE 843.0827252 663.2805705 814.517004 734.4757993 915.2568237 869.3684191 783.6729889 741.5514616 735.2771794 669.8266742 1.258658034 0.990227168 1.216011597 1.0965162 1.366408444 1.297900565 1.169963842 1.107079623 1.097712599 1 9.387644019 -8.738728564 1.459602427 1.012001332 1.197398707 0.292667209 0.099414062 0.537433859 2.26231461 0.097983643 0.03032665 1.83E-09 8.738728564 0.185397375 TASTPT(ph)PPQTGGGLEPQANGETPQVAVIVRPDDR ddPTM_K562_Paclitaxel_30min_R1 1 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR 34 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6;C9JSU8;C9J556;C9JF13;C9K073;C9J2Z7;C9J6B6;C9JWW9;C9JWH7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 T(0.008)AS(0.052)T(0.161)PT(0.413)PPQT(0.366)GGGLEPQANGET(0.001)PQVAVIVRPDDR 57.097 0.0048472 338110000 659.44 495.56 749.07 751.35 611.3 788.29 527.91 725.6 622.07 746.66 TRUE FALSE 668.6741945 549.6669167 559.9580141 703.1617739 694.5694094 928.0821634 628.0781666 663.9557509 681.822603 594.4902821 1.124785744 0.924602022 0.941912813 1.18279776 1.168344429 1.561139334 1.056498627 1.116848788 1.146902857 1 9.215509417 -6.272946794 21.83910255 1.191684508 0.989850389 0.225602085 0.149835735 178.785199 339304.4508 0.043061199 0.064714801 5.33E-07 6.272946794 -0.201834119 TASTPTPPQT(ph)GGGLEPQANGETPQVAVIVRPDDR ddPTM_K562_Paclitaxel_30min_R1 1 TASTPTPPQTGGGLEPQANGETPQVAVIVRPDDR 34 1 Q04637-9;Q04637;E7EX73;E9PGM1;Q04637-3;Q04637-8;E7EUU4;Q04637-7;Q04637-4;Q04637-5;Q04637-6;C9JSU8;C9J556;C9JF13;C9K073;C9J2Z7;C9J6B6;C9JWW9;C9JWH7 Q04637-9 EIF4G1 Eukaryotic translation initiation factor 4 gamma 1 1 TAS(0.002)T(0.015)PT(0.108)PPQT(0.87)GGGLEPQANGET(0.005)PQVAVIVRPDDR 59.573 0.0035156 19061000 681.18 622.58 801.81 843.26 610.26 423.65 598.36 663.11 749.14 811.46 TRUE FALSE 690.7186216 690.5553898 599.3831488 789.1770779 693.3877438 498.7783792 711.8956864 606.7746665 821.0982442 646.0840066 1.069084847 1.0688322 0.92771705 1.221477501 1.073216078 0.772002362 1.101862419 0.93915754 1.270884646 1 9.335577952 -12.15347783 2.383763096 0.901876664 1.042263795 0.009211315 0.136789413 15443151.11 5642354.152 8193821.335 0.033057455 7.02E-13 12.15347783 0.140387131 TATCHSSS(ph)SPPIDAASAEPYGFR ddPTM_K562_Paclitaxel_30min_R1 2 TATCHSSSSPPIDAASAEPYGFR 23 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 T(0.001)AT(0.001)CHS(0.001)S(0.001)S(0.56)S(0.435)PPIDAASAEPYGFR;TATCHSS(0.001)S(0.553)S(0.446)PPIDAASAEPYGFR 99.859 9.81E-05 130650000 1133.54 759.79 1191.02 925.67 965.15 1151.37 1061.32 1281.83 1229.88 1438.47 TRUE FALSE 1149.413057 842.7464416 890.3322707 866.3016693 1096.61977 1355.549303 1262.69993 1172.930541 1348.015469 1145.309024 1.003583341 0.735824501 0.777372964 0.756391202 0.957488107 1.183566421 1.102497145 1.024117086 1.176988429 1 10.1615212 -6.99099785 4.31424628 1.098208162 0.811333068 0.694170539 0.087205886 0.11036845 5.002642429 0.027878677 0.030386967 1.02E-07 6.99099785 -0.286875094 TATCHSSSS(ph)PPIDAASAEPYGFR ddPTM_K562_Paclitaxel_30min_R1 3 TATCHSSSSPPIDAASAEPYGFR 23 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 TATCHSS(0.006)S(0.26)S(0.733)PPIDAASAEPYGFR;TATCHSS(0.001)S(0.469)S(0.53)PPIDAASAEPYGFR;TATCHSS(0.002)S(0.012)S(0.986)PPIDAASAEPYGFR 136.26 3.57E-12 1506680000 3709.89 3589.23 5031.2 4484.04 3213.14 3329.41 3200.25 4260.33 3137.85 4606 TRUE FALSE 3761.839906 3981.114269 3761.011335 4196.453744 3650.824067 3919.834116 3807.480731 3898.388374 3439.254513 3667.294672 1.025780648 1.085572507 1.025554713 1.144291397 0.995508786 1.0688626 1.038226015 1.063014762 0.93781788 1 11.84050048 -8.751386783 24.9999786 0.968908938 1.05661502 0.42084429 0.040789196 156.9831362 390410.9729 0.026163615 0.009635997 1.77E-09 8.751386783 0.087706082 TATDS(ph)DERIDDEIDTEVEETQEEK ddPTM_K562_Paclitaxel_30min_R1 1 TATDSDERIDDEIDTEVEETQEEK 24 1 A0A0C4DGZ1;Q8N5P1 A0A0C4DGZ1 ZC3H8 Zinc finger CCCH domain-containing protein 8 1 T(0.11)AT(0.412)DS(0.478)DERIDDEIDTEVEETQEEK 87.739 0.00016097 10674000 1185.9 1064.4 1942.3 1449.4 1063.2 844.49 708.41 1312.9 927.42 1566.6 TRUE FALSE 1202.506259 1180.614792 1451.942343 1356.441971 1208.02584 994.2484443 842.8270994 1201.36095 1016.502835 1247.32606 0.964067293 0.946516576 1.164043941 1.087479862 0.968492425 0.797103882 0.67570712 0.963149082 0.81494556 1 10.28462293 -7.072909564 4.185797606 0.83819727 1.04183614 0.438689923 0.101458642 0.210870136 7.023238866 0.035027042 0.035892816 8.45E-08 7.072909564 0.203638871 TATPPGYKPGS(ph)PPSFR ddPTM_K562_Paclitaxel_30min_R1 1 TATPPGYKPGSPPSFR 16 1 P54259 P54259 ATN1 Atrophin-1 1 T(0.004)AT(0.016)PPGY(0.01)KPGS(0.963)PPS(0.007)FR 72.793 0.024748 21352000 1984.1 2229.1 3166.7 2216.2 1813 1517.6 1310.6 1796.3 2057.8 3072 TRUE FALSE 2011.883521 2472.480676 2367.22742 2074.062851 2059.961294 1786.725052 1559.279508 1643.693103 2255.460884 2445.924714 0.822545154 1.010857228 0.967825136 0.847966759 0.842201431 0.730490616 0.637501023 0.672012958 0.922130134 1 11.25616428 -6.699472615 1.950903879 0.765791417 0.938259731 0.187292745 0.113739873 0.41928395 3.280465577 0.038404599 0.052508552 2.00E-07 6.699472615 0.172468314 TATPPGYKPGSPPS(ph)FR ddPTM_K562_Paclitaxel_30min_R1 1 TATPPGYKPGSPPSFR 16 1 P54259 P54259 ATN1 Atrophin-1 1 TATPPGY(0.004)KPGS(0.395)PPS(0.601)FR 68.134 0.030704 21043000 2138.2 2610.2 3534 2479.2 1827.3 1847.8 1509.7 2378.7 2126.9 2439.6 TRUE FALSE 2168.141397 2895.190463 2641.797992 2320.195208 2076.209196 2175.481386 1796.157694 2176.614588 2331.198248 1942.408181 1.116213069 1.490515995 1.360063254 1.19449415 1.068884088 1.119991878 0.924706615 1.120575278 1.200158788 1 10.92363069 -6.508598444 2.934605698 1.073453519 1.337715577 0.506513826 0.11027104 0.205491999 3.581434654 0.033347211 0.048951552 3.10E-07 6.508598444 0.264262058 TAVAPSAVNLADPRT(ph)PTAPAVNLAGAR ddPTM_K562_Paclitaxel_30min_R1 1 TAVAPSAVNLADPRTPTAPAVNLAGAR 27 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 TAVAPSAVNLADPRT(0.723)PT(0.277)APAVNLAGAR 82.294 3.78E-05 116190000 1311.3 1143.2 1751.6 1662.7 1308.2 1278.7 1174 1328.5 778.63 1469.7 TRUE FALSE 1329.662246 1268.018442 1309.386916 1556.061864 1486.398988 1505.459491 1396.760371 1215.635633 853.4208905 1170.174333 1.136294147 1.083614985 1.118967387 1.329769266 1.270237217 1.286525818 1.193634428 1.038850023 0.729310895 1 10.19250776 -8.482763531 3.541219322 0.864291381 1.204351034 0.663955588 0.096118092 0.143849175 3.660545501 0.070176246 0.027261049 3.29E-09 8.482763531 0.340059654 TAVIPINGS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 TAVIPINGSPR 11 0 P06400;A0A3B3IS71 P06400 RB1 Retinoblastoma-associated protein 1 TAVIPINGS(1)PR;TAVIPINGS(1)PR;TAVIPINGS(1)PR 140.33 0.00064446 705850000 7987.2 6889.2 10089.3 8884.8 7648.4 6822.1 6199.4 8933.6 7099.7 8513.3 TRUE FALSE 8099.045443 7641.386154 7542.131432 8314.968695 8690.241568 8031.903648 7375.703787 8174.634918 7781.657907 6778.284787 1.19485175 1.127333299 1.112690256 1.226706897 1.282070884 1.184946325 1.088137194 1.206003462 1.148027584 1 12.72670454 -9.040924867 17.53607149 0.999999998 1.176379387 0.490800704 0.054077968 111.7192972 47872.33815 0.056376027 0.014556893 9.10E-10 9.040924867 0.176379388 TAVPPLSEGDGYS(ph)SENTSR ddPTM_K562_Paclitaxel_30min_R1 2 TAVPPLSEGDGYSSENTSR 19 0 Q9BYW2;H7C3H4;A0A1W2PPX9 Q9BYW2 SETD2 Histone-lysine N-methyltransferase SETD2 1 TAVPPLSEGDGYS(0.497)S(0.497)ENT(0.003)S(0.003)R;TAVPPLSEGDGY(0.001)S(0.768)S(0.143)ENT(0.006)S(0.082)R 190.37 1.70E-16 26256000 4972.6 5082.3 6294 5562.4 4660.5 4641.1 4834.7 5984.1 4447.6 6008.9 TRUE FALSE 5042.231742 5637.202701 4705.001857 5205.65256 5295.339003 5464.133921 5752.059086 5475.713353 4874.811852 4784.282882 1.053915888 1.178275374 0.983428859 1.088073738 1.106819796 1.142100928 1.202282396 1.144521235 1.018922161 1 12.22408698 -6.760736183 4.043817937 1.11721291 1.075920706 0.009969868 0.071855074 0.672213502 24.75732368 0.022422616 0.027568479 1.73E-07 6.760736183 -0.041292204 TAVPS(ph)PVEAAAASDPAAAR ddPTM_K562_Paclitaxel_30min_R1 1 TAVPSPVEAAAASDPAAAR 19 0 Q147X3;Q147X3-2;J3KNC2 Q147X3 NAA30 N-alpha-acetyltransferase 30 1 T(0.001)AVPS(0.997)PVEAAAAS(0.002)DPAAAR 103.41 0.00075377 15931000 1073.2 1072 1742 1368.8 1011.3 1218.5 1036.8 1082 1480.6 1558.8 TRUE FALSE 1088.228111 1189.044585 1302.210555 1281.011295 1149.056181 1434.583866 1233.527388 990.0773464 1622.818245 1241.115704 0.876814392 0.958044912 1.04922575 1.03214494 0.925825189 1.155882454 0.993885891 0.797731705 1.30754791 1 10.2774219 -5.45688381 2.880238677 1.024577946 0.875351358 0.12850135 0.126901591 0.648553767 9.296594032 0.031423388 0.178845973 3.49E-06 5.45688381 -0.149226588 TAVSVTQGGHS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 TAVSVTQGGHSR 12 0 P40425 P40425 PBX2 Pre-B-cell leukemia transcription factor 2 1 TAVSVTQGGHS(1)R;TAVSVTQGGHS(1)R 134.88 0.00030292 38404000 4725.8 4371.4 5377.5 4889.8 4039.6 3433.9 5072 5987.2 3816.2 6923.2 TRUE FALSE 4791.97578 4848.684235 4019.883617 4576.190114 4589.861911 4042.853951 6034.385522 5478.549989 4182.763061 5512.24804 0.869332393 0.879620111 0.729263921 0.830185812 0.83266607 0.733431065 1.094723147 0.993886696 0.758812563 1 12.42842509 -7.748308873 24.99989145 0.961346191 0.813419736 0.392332191 0.091105974 246.2826064 468911.3849 0.035217845 0.027110601 1.79E-08 7.748308873 -0.147926455 TCDSITPSKS(ph)SPVPVSDTQK ddPTM_K562_Paclitaxel_30min_R1 1 TCDSITPSKSSPVPVSDTQK 20 1 F5GWN9;F8WE42;F5H101;Q76FK4-2;Q76FK4-4;Q76FK4 F5GWN9 NOL8 Nucleolar protein 8 1 TCDSIT(0.001)PS(0.004)KS(0.492)S(0.492)PVPVS(0.008)DT(0.004)QK 89.344 0.00076282 22559000 1873.6 1240.5 3993.8 2355.7 1435.3 966.79 1086.6 2112 1869.3 2776.1 TRUE FALSE 1899.836181 1375.941985 2985.515795 2204.615946 1630.81216 1138.236632 1292.776678 1932.572417 2048.854617 2210.329296 0.859526309 0.622505428 1.350710865 0.997415159 0.737814118 0.514962469 0.584879674 0.874336879 0.92694542 1 11.1100456 TCDSITPSKSS(ph)PVPVSDTQK ddPTM_K562_Paclitaxel_30min_R1 1 TCDSITPSKSSPVPVSDTQK 20 1 F5GWN9;F8WE42;F5H101;Q76FK4-2;Q76FK4-4;Q76FK4 F5GWN9 NOL8 Nucleolar protein 8 1 TCDSITPS(0.001)KS(0.047)S(0.937)PVPVS(0.014)DT(0.001)QK 98.169 0.00056999 22807000 3119.5 2260.1 6780.4 3685.1 2313.1 1916 1893.8 3376.6 2843.1 4585 TRUE FALSE 3163.182624 2506.865361 5068.604161 3448.75418 2628.183381 2255.775698 2253.138664 3089.736754 3116.192458 3650.574483 0.866488998 0.686704345 1.388440144 0.944715468 0.719936929 0.617923483 0.617201121 0.846370008 0.853617005 1 11.8339078 -6.704182709 6.054783261 0.752444055 0.98397412 0.18777899 0.196036788 0.31342356 23.39726358 0.06050314 0.077633717 1.98E-07 6.704182709 0.231530065 TCEERPAEDGS(ph)DEEDPDSMEAPTR ddPTM_K562_Paclitaxel_30min_R1 7 TCEERPAEDGSDEEDPDSMEAPTR 24 1 D6RGJ8;Q9H6Y2 D6RGJ8 WDR55 WD repeat-containing protein 55 1 TCEERPAEDGS(0.999)DEEDPDS(0.001)MEAPTR;TCEERPAEDGS(1)DEEDPDSMEAPTR;T(0.006)CEERPAEDGS(0.977)DEEDPDS(0.012)MEAPT(0.004)R;T(0.001)CEERPAEDGS(0.999)DEEDPDSMEAPTR;T(0.002)CEERPAEDGS(0.998)DEEDPDSMEAPTR;T(0.003)CEERPAEDGS(0.978)DEEDPDS(0.014)MEAPT(0.005)R;T(0.005)CEERPAEDGS(0.994)DEEDPDS(0.001)MEAPTR 97.3 3.22E-05 921643500 6350.02 5859.21 8016.58 7334.2 6004.02 5695.63 5421.1 6831.62 6002.43 7790.23 TRUE FALSE 6438.939871 6498.938362 5992.695231 6863.817239 6821.869173 6705.67001 6449.725425 6251.231239 6578.990221 6202.57685 1.03810723 1.047780385 0.96616219 1.106607367 1.099844361 1.081110347 1.039846113 1.007844222 1.060686611 1 12.59865199 -6.267474753 24.99769541 1.059019252 1.02039298 0.174959455 0.038596276 880.7816517 3648076.983 0.011407005 0.01748879 5.40E-07 6.267474753 -0.038626271 TCFS(ph)PNRVIGLSSDLQQVGGASAR ddPTM_K562_Paclitaxel_30min_R1 2 TCFSPNRVIGLSSDLQQVGGASAR 24 1 O00303 O00303 EIF3F Eukaryotic translation initiation factor 3 subunit F 1 T(0.228)CFS(0.772)PNRVIGLSSDLQQVGGASAR;T(0.241)CFS(0.757)PNRVIGLS(0.002)S(0.001)DLQQVGGASAR 74.561 0.00028207 355377200 1064.41 1006.91 1434.68 1420.58 943.41 944.87 941.7 1240.62 1470.12 1310.52 TRUE FALSE 1079.315024 1116.847839 1072.47729 1329.470357 1071.918414 1112.429428 1120.382659 1135.221587 1611.331595 1043.435305 1.034386147 1.070356575 1.027833049 1.27412821 1.027297437 1.06612209 1.07374425 1.087965475 1.54425635 1 10.02712544 -8.590080298 24.99999899 1.286791577 1.083889442 0.226888739 0.139328965 69.20330635 25742.6391 0.086135892 0.032556296 2.57E-09 8.590080298 -0.202902135 TCNS(ph)PQNST(ph)DSVSDIVPDSPFPGALGSDTR ddPTM_K562_Paclitaxel_30min_R1 2 TCNSPQNSTDSVSDIVPDSPFPGALGSDTR 30 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 2 T(0.187)CNS(0.803)PQNS(0.309)T(0.347)DS(0.281)VS(0.073)DIVPDSPFPGALGSDTR;T(0.062)CNS(0.932)PQNS(0.403)T(0.469)DS(0.129)VS(0.006)DIVPDSPFPGALGSDTR 93.805 6.57E-07 19428900 1622.23 1575.6 2280.3 2136.6 1448.62 1615.69 1517.61 1724.45 877.73 1854.07 TRUE FALSE 1644.946225 1747.629336 1704.610063 1999.568039 1645.946569 1902.209936 1805.568575 1577.947209 962.0398883 1476.209516 1.114304038 1.183862668 1.154720955 1.35452862 1.114981682 1.288577207 1.223111323 1.068918193 0.651696035 1 10.52768178 -8.56291884 5.492867358 0.827976306 1.204176083 0.671473587 0.104987297 0.100514804 7.518549799 0.06864768 0.025413436 2.74E-09 8.56291884 0.376199777 TCNS(ph)PQNSTDSVSDIVPDSPFPGALGSDTR ddPTM_K562_Paclitaxel_30min_R1 3 TCNSPQNSTDSVSDIVPDSPFPGALGSDTR 30 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 T(0.066)CNS(0.925)PQNS(0.007)T(0.001)DS(0.001)VSDIVPDSPFPGALGSDTR;T(0.262)CNS(0.735)PQNS(0.003)T(0.001)DSVSDIVPDSPFPGALGSDTR;T(0.074)CNS(0.653)PQNS(0.224)T(0.047)DS(0.003)VSDIVPDSPFPGALGSDTR 178.05 1.39E-38 228795000 3007.86 2773.25 4001.9 3023.03 2650.68 2852.47 2628.75 3270.7 2606.47 3702.1 TRUE FALSE 3049.97932 3076.042814 2991.57085 2829.146386 3011.747492 3358.315504 3127.54159 2992.83362 2856.83309 2947.609988 1.034729606 1.043571852 1.01491407 0.959810286 1.021759156 1.139335094 1.061043219 1.015342475 0.969203219 1 11.52532993 -8.545189458 5.557036182 0.985933346 1.038695319 0.207302561 0.042694591 0.316275027 29.88622899 0.032445333 0.01234238 2.85E-09 8.545189458 0.052761973 TCPSLSPTS(ph)PLNNK ddPTM_K562_Paclitaxel_30min_R1 1 TCPSLSPTSPLNNK 14 0 O75925;O75925-2 O75925 PIAS1 E3 SUMO-protein ligase PIAS1 1 TCPSLS(0.001)PT(0.048)S(0.951)PLNNK 172.58 4.21E-06 7143200 2186.4 1877.3 3837.6 2530.1 2134.5 1873.2 1792.6 2316.6 1423.3 2750.1 TRUE FALSE 2217.016346 2082.269963 2868.750417 2367.83071 2425.255037 2205.385719 2132.736492 2119.79037 1560.014324 2189.62811 1.012508168 0.950969689 1.310154178 1.08138487 1.107610478 1.007196477 0.97401768 0.968105205 0.712456292 1 11.09647015 -7.898386166 1.348393159 0.873710141 1.09492908 0.375516732 0.111711753 0.471395465 1.684237799 0.076550672 0.039296933 1.26E-08 7.898386166 0.221218938 TCRS(ph)S(ph)GSKS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 TCRSSGSKSR 10 2 E7ESD5;E9PLN6;F2Z2Y1;O95677-3;O95677-5;O95677-2;O95677-4;O95677 E7ESD5 EYA4 Eyes absent homolog;Eyes absent homolog 4 3 TCRS(0.969)S(0.519)GS(0.519)KS(0.993)R 63.864 0.027535 0 820.57 655.12 1372.6 723.74 771.98 688.25 709.53 1026.6 691.02 1216.3 TRUE FALSE 832.0605117 726.6482171 1026.070154 677.3225557 877.1367457 810.301474 844.1596135 939.3839222 757.3955586 968.4173924 0.859196167 0.750346104 1.059532968 0.699411804 0.905742454 0.836727511 0.871689852 0.970019673 0.782096196 1 9.91948518 -15 0.236271386 1.7666516 0.847425578 0.146309286 0.0996648 317.3278741 3.17250721 116.7435913 0.153454559 1.00E-15 15 -0.919226021 TDAEAT(ph)DTEATET ddPTM_K562_Paclitaxel_30min_R1 1 TDAEATDTEATET 13 0 Q9Y3D3 Q9Y3D3 MRPS16 "28S ribosomal protein S16, mitochondrial" 1 T(0.001)DAEAT(0.795)DT(0.205)EATET 142.89 0.00011595 20873000 13848 11889 15995 13263 10719 10965 9991.1 12217 8450.6 14731 TRUE FALSE 14041.91472 13187.08123 11956.86443 12412.37054 12179.10927 12909.48879 11886.85907 11179.08959 9262.317888 11728.81411 1.197215216 1.124332017 1.019443595 1.058280097 1.038392216 1.100664455 1.01347493 0.953130426 0.789706257 1 13.51776953 -8.188543707 2.194948176 0.893054765 1.083947344 0.574238427 0.067701747 0.234661822 2.159386757 0.044217889 0.019910967 6.48E-09 8.188543707 0.190892579 TDASSASS(ph)FLDSDELER ddPTM_K562_Paclitaxel_30min_R1 1 TDASSASSFLDSDELER 17 0 G3XAC6;Q14498-2;Q14498;H0Y4X3;Q14498-3;A0A0U1RQW2;A0A0U1RQH7 G3XAC6 RBM39 RNA-binding protein 39 1 TDAS(0.001)S(0.004)AS(0.143)S(0.851)FLDSDELER 103.5 0.0016743 23028000 985.59 747.42 851.24 891.1 683.45 933.78 959.89 1186.8 815.56 1482.9 TRUE FALSE 999.3913008 829.0258432 636.333934 833.9488344 776.5474609 1099.372772 1142.024117 1085.973932 893.898182 1180.684166 0.846451007 0.702157162 0.53895356 0.706326771 0.657709727 0.931131969 0.967256231 0.9197836 0.757101863 1 10.20540738 -7.262639437 24.94796612 0.913303809 0.683457338 0.599541397 0.09174415 76.42586284 1588801.41 0.032265058 0.030046297 5.46E-08 7.262639437 -0.229846471 TDCEPVGLEPAVEQSSAASELAEASSEELAEAPTEAPS(ph)PEAR ddPTM_K562_Paclitaxel_30min_R1 3 TDCEPVGLEPAVEQSSAASELAEASSEELAEAPTEAPSPEAR 42 0 Q15424-2;Q15424;Q15424-3;Q15424-4;Q14151 Q15424-2;Q14151 SAFB;SAFB2 Scaffold attachment factor B1;Scaffold attachment factor B2 1 TDCEPVGLEPAVEQSSAASELAEASSEELAEAPT(0.005)EAPS(0.995)PEAR;TDCEPVGLEPAVEQSSAASELAEASSEELAEAPT(0.002)EAPS(0.998)PEAR;TDCEPVGLEPAVEQSSAASELAEASSEELAEAPT(0.005)EAPS(0.995)PEAR 91.707 1.74E-17 33284300 5175 5461.8 7762.3 6908.8 6049.5 5535.2 5424.8 6837 3776 7589.6 TRUE FALSE 5247.465966 6058.137795 5802.611362 6465.700491 6873.544319 6516.790002 6454.127481 6256.154175 4138.701672 6042.835354 0.868378114 1.002532328 0.960246477 1.069977935 1.137470064 1.078432494 1.068062772 1.035301114 0.684893999 1 12.56100992 -8.721636149 24.87295353 0.842446947 1.032597672 0.356669498 0.099254226 130.879268 81786.32295 0.066450895 0.02511524 1.90E-09 8.721636149 0.190150725 TDEDRTVMDGGLES(ph)DGPNMTENGLEDESRPQRR ddPTM_K562_Paclitaxel_30min_R1 1 TDEDRTVMDGGLESDGPNMTENGLEDESRPQRR 33 3 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 1 TDEDRTVMDGGLES(0.499)DGPNMT(0.499)ENGLEDES(0.002)RPQRR 51.296 0.0066775 19301000 816.05 582.72 719.72 755.2 619.83 717.91 483.43 649.17 886.12 854.3 TRUE FALSE 827.4772177 646.3433402 538.0177846 706.7648522 704.2613398 845.2212585 575.1583188 594.0189565 971.2357853 680.1931911 1.216532639 0.950234946 0.790977904 1.039064874 1.035384284 1.242619405 0.845580824 0.873309178 1.427882252 1 9.409800754 -6.501482749 24.32435339 1.05955851 0.971126198 0.036138596 0.186251099 2079.432476 2364032.966 0.052958498 0.077628633 3.15E-07 6.501482749 -0.088432312 TDEVPAGGS(ph)RS(ph)EAEDEDDEDYVPYVPLR ddPTM_K562_Paclitaxel_30min_R1 1 TDEVPAGGSRSEAEDEDDEDYVPYVPLR 28 1 D6RD33;D6RGI7;A0A499FJW5;Q9UJV9 D6RD33 DDX41 Probable ATP-dependent RNA helicase DDX41 2 T(0.001)DEVPAGGS(0.989)RS(0.998)EAEDEDDEDY(0.01)VPY(0.001)VPLR 68.024 0.00075071 20299000 1406.7 1335.3 1908.4 1481.8 1352.4 1112 1164.4 1652.8 1590 2242.5 TRUE FALSE 1426.39814 1481.09257 1426.600817 1386.76398 1536.619776 1309.197587 1385.338821 1512.384324 1742.726604 1785.477269 0.798888994 0.829521941 0.799002509 0.776690919 0.860621304 0.733247972 0.775892724 0.847047649 0.97605645 1 10.80209405 -8.711858256 2.893456757 1.000268177 0.797319024 0.849759745 0.031864102 0.092470887 1.446197047 0.028934832 0.008489539 1.94E-09 8.711858256 -0.202949152 TDEVPAGGSRS(ph)EAEDEDDEDYVPYVPLR ddPTM_K562_Paclitaxel_30min_R1 2 TDEVPAGGSRSEAEDEDDEDYVPYVPLR 28 1 D6RD33;D6RGI7;A0A499FJW5;Q9UJV9 D6RD33 DDX41 Probable ATP-dependent RNA helicase DDX41 1 TDEVPAGGS(0.155)RS(0.845)EAEDEDDEDYVPYVPLR;TDEVPAGGS(0.114)RS(0.886)EAEDEDDEDY(0.001)VPYVPLR 144.33 1.12E-24 163156000 2124.64 1840.18 2390.48 2187.21 1536.48 1718.82 1335.64 1784.34 1841.61 2098.71 TRUE FALSE 2154.391515 2041.097075 1786.973759 2046.93214 1745.774589 2023.628594 1589.070717 1632.749179 2018.504869 1670.99175 1.289289139 1.221488422 1.069409085 1.224980399 1.044753566 1.211034461 0.950974604 0.977113848 1.207968184 1 10.7064889 -2 0.294360377 1.03361849 3.13027316 0.381878745 0.092228428 55.32446726 0.787108442 0.094404381 60.69033117 0.01 2 2.09665467 TDGFAEAIHS(ph)PQVAGVPR ddPTM_K562_Paclitaxel_30min_R1 4 TDGFAEAIHSPQVAGVPR 18 0 P12270 P12270 TPR Nucleoprotein TPR 1 TDGFAEAIHS(1)PQVAGVPR;TDGFAEAIHS(1)PQVAGVPR;TDGFAEAIHS(1)PQVAGVPR;TDGFAEAIHS(1)PQVAGVPR 139.69 5.63E-11 642000000 11062.3 9100.8 12212.1 9117.6 7187.3 7537.1 7943.7 10444.6 4779.96 14617.4 TRUE FALSE 11217.20633 10094.45612 9129.004318 8532.837945 8166.331942 8873.698859 9450.975606 9557.266037 5239.096515 11638.36586 0.96381283 0.867343083 0.784388842 0.733164608 0.701673417 0.762452304 0.81205349 0.821186252 0.4501574 1 13.50660088 -5.546830975 1.751560972 0.747495972 0.980753877 0.212851155 0.128283172 0.778242559 3.61130974 0.034367139 0.252655376 2.84E-06 5.546830975 0.233257905 TDGS(ph)ISGDRQPVTVADYIS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 TDGSISGDRQPVTVADYISR 20 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 2 T(0.306)DGS(0.464)IS(0.229)GDRQPVT(0.001)VADYIS(0.999)R 98.684 0.0097911 21312000 1182.7 1001.1 1752.3 1396.9 1045.2 823.6 1166.6 1250.1 887.13 1700.7 TRUE FALSE 1199.261449 1110.403484 1309.910193 1307.309086 1187.573935 969.6538961 1387.95626 1143.896202 972.3428003 1354.096406 0.885654406 0.820032812 0.967368488 0.965447571 0.877023179 0.716089262 1.025005497 0.84476718 0.718075017 1 10.40311474 -6.994088604 24.8039597 0.854149778 0.909086371 0.047151181 0.101578554 466.363324 1956817.115 0.031592192 0.035723126 1.01E-07 6.994088604 0.054936593 TDGSIS(ph)GDRQPVT(ph)VADYISR ddPTM_K562_Paclitaxel_30min_R1 1 TDGSISGDRQPVTVADYISR 20 1 P51116 P51116 FXR2 Fragile X mental retardation syndrome-related protein 2 2 T(0.005)DGS(0.199)IS(0.914)GDRQPVT(0.881)VADYISR 101.72 0.0053377 23954000 1620.6 1587.9 2076.1 1865.6 1420.6 1546.4 1366.4 1950.5 1120.8 2228.2 TRUE FALSE 1643.2934 1761.272292 1551.962878 1745.948766 1614.109771 1820.632327 1625.667267 1784.79285 1228.457848 1774.091617 0.926273133 0.992774147 0.874792972 0.984136755 0.909823233 1.026233544 0.916337833 1.006031951 0.692443297 1 10.7928648 TDLYPNS(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 TDLYPNSK 8 0 Q6NW34;Q6NW34-2 Q6NW34 C3orf17 Uncharacterized protein C3orf17 1 TDLY(0.127)PNS(0.873)K 72.789 0.029003 13029000 0 0 125.36 0 0 0 61.952 0 65.646 0 TRUE FALSE 0 0 93.71131757 0 0 0 73.70706859 0 71.95159161 0 0 TDNSSLS(ph)SPLNPK ddPTM_K562_Paclitaxel_30min_R1 2 TDNSSLSSPLNPK 13 0 Q9UIG0-2;Q9UIG0 Q9UIG0-2 BAZ1B Tyrosine-protein kinase BAZ1B 1 TDNSSLS(0.764)S(0.236)PLNPK;TDNS(0.001)S(0.005)LS(0.497)S(0.497)PLNPK 172.33 6.89E-05 32834000 5747.2 5165.7 10764.5 6608.4 5486.6 4510.8 4159.1 6640.7 5973.9 7894.9 TRUE FALSE 5827.678532 5729.708595 8046.868841 6184.566802 6233.967809 5310.727045 4948.267513 6076.531085 6547.719787 6285.915046 0.927101065 0.911515436 1.280142793 0.983876931 0.991735931 0.844861409 0.787199235 0.966689979 1.041649424 1 12.61790706 -6.929343999 3.090227331 0.917574844 1.035933521 0.126967772 0.11711764 0.488200818 9.451736276 0.041052594 0.046557074 1.18E-07 6.929343999 0.118358677 TDRVGVEASEETPQTSSSSARPGT(ph)PSDHQSQEASQFER ddPTM_K562_Paclitaxel_30min_R1 1 TDRVGVEASEETPQTSSSSARPGTPSDHQSQEASQFER 38 2 I1E4Y6;Q6Y7W6;Q6Y7W6-4;Q6Y7W6-5;E7ESB6;C9JHW1 I1E4Y6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 TDRVGVEASEET(0.001)PQT(0.099)S(0.099)S(0.099)S(0.099)S(0.099)ARPGT(0.356)PS(0.086)DHQS(0.025)QEAS(0.036)QFER 53.091 0.0098157 88571000 685.53 601.75 854.04 829.57 571.42 708.36 481.81 927.98 677.74 801.55 TRUE FALSE 695.129535 667.4511 638.4270394 776.3650932 649.2570782 833.9777001 573.2309323 849.1423067 742.8399552 638.19367 1.089214086 1.045844124 1.000365672 1.216503907 1.017335503 1.306778396 0.898208427 1.330540158 1.163972615 1 9.317850489 -6.249164321 24.90902586 1.139703315 1.045211579 0.087403547 0.129452144 1707.175595 3464259.425 0.033112858 0.056838953 5.63E-07 6.249164321 -0.094491736 TDS(ph)QTIGDFATR ddPTM_K562_Paclitaxel_30min_R1 1 TDSQTIGDFATR 12 0 Q13480-2 Q13480-2 GAB1 GRB2-associated-binding protein 1 1 T(0.124)DS(0.862)QT(0.01)IGDFAT(0.004)R 88.78 0.019939 0 509.65 623.68 811.21 661.31 613.91 595.69 627.35 750.69 614.41 813.78 TRUE FALSE 516.7866724 691.7754916 606.4100026 618.8965365 697.5349356 701.3272576 746.3863875 686.9141988 673.4268258 647.9311893 0.797594993 1.067668146 0.93591729 0.955188679 1.076557121 1.082410091 1.15195317 1.060165354 1.039349296 1 9.339696796 -6.751008819 6.152802909 1.076625642 0.947272361 0.439919912 0.070914945 0.147401575 20.87218626 0.020755735 0.025617625 1.77E-07 6.751008819 -0.129353282 TDS(ph)TSDGRPAWMR ddPTM_K562_Paclitaxel_30min_R1 1 TDSTSDGRPAWMR 13 1 A0A2R8Y706;Q14204;A0A2R8Y6I5;A0A2R8Y542;A0A2R8Y5T0 A0A2R8Y706 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 1 TDS(0.996)T(0.003)S(0.001)DGRPAWMR 97.273 0.0046927 0 1479.9 1202.5 1782.9 1492.5 858.56 1221 1113.5 1707.2 1503.3 1743.6 TRUE FALSE 1500.623166 1333.793017 1332.784844 1396.77773 975.5104075 1437.527206 1324.780812 1562.162704 1647.698682 1388.253363 1.080943296 0.9607706 0.960044384 1.006140354 0.702689029 1.035493408 0.954278842 1.125272047 1.186886145 1 10.43905518 -8.259107273 22.53579367 1.117059357 0.952546808 0.293496577 0.103653241 59.83935062 578270.2656 0.051358236 0.027776646 5.51E-09 8.259107273 -0.164512549 TDSQSVRHS(ph)PIAPSSPSPQVLAQK ddPTM_K562_Paclitaxel_30min_R1 2 TDSQSVRHSPIAPSSPSPQVLAQK 24 1 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 T(0.001)DS(0.002)QS(0.002)VRHS(0.994)PIAPSSPSPQVLAQK;T(0.224)DS(0.224)QS(0.224)VRHS(0.265)PIAPS(0.021)S(0.021)PS(0.021)PQVLAQK 103.92 8.49E-06 127048000 5569.9 4961.2 9608.3 6335.1 4604.5 4595.6 3953.03 6503.4 5071.7 8162.3 TRUE FALSE 5647.895785 5502.880594 7182.565831 5928.795041 5231.710855 5410.565135 4703.096806 5950.895577 5558.859446 6498.81878 0.869064976 0.846750891 1.105210974 0.912288101 0.805024887 0.832545932 0.723684867 0.915688801 0.855364588 1 12.6659618 -6.578381306 7.357878352 0.84433352 0.943622897 0.1422307 0.093144599 0.372447426 41.13223752 0.02772085 0.035930334 2.64E-07 6.578381306 0.099289377 TDSREDEIS(ph)PPPPNPVVK ddPTM_K562_Paclitaxel_30min_R1 4 TDSREDEISPPPPNPVVK 18 1 K7EMU2;K7EMZ6;K7EIE5;K7EID3;K7EJ40;K7EK41;K7EPB2;P10644-2;P10644 K7EMU2 PRKAR1A "cAMP-dependent protein kinase type I-alpha regulatory subunit;cAMP-dependent protein kinase type I-alpha regulatory subunit, N-terminally processed" 1 TDSREDEIS(1)PPPPNPVVK;TDS(0.002)REDEIS(0.998)PPPPNPVVK;TDSREDEIS(1)PPPPNPVVK;TDSREDEIS(1)PPPPNPVVK 206.81 9.97E-19 59622000 6885.1 6301.6 12666.8 8115.4 5917.94 5450.09 4739.2 7934.6 6200.37 9533.9 TRUE FALSE 6981.512642 6989.629999 9468.909679 7594.914567 6724.06362 6416.586938 5638.43846 7260.506204 6795.943242 7590.885947 0.919723033 0.920792388 1.247405078 1.000530718 0.885807489 0.845301455 0.742790565 0.956476787 0.89527669 1 12.89005256 -6.726649815 4.649163682 0.875294744 1.03377579 0.275403565 0.106179043 0.249872025 12.35778703 0.033564354 0.042333862 1.88E-07 6.726649815 0.158481046 TDTPAPPTHALSQS(ph)PAEADGSVAFVPGEAQVAR ddPTM_K562_Paclitaxel_30min_R1 1 TDTPAPPTHALSQSPAEADGSVAFVPGEAQVAR 33 0 Q5SXM2 Q5SXM2 SNAPC4 snRNA-activating protein complex subunit 4 1 TDTPAPPTHALS(0.031)QS(0.95)PAEADGS(0.019)VAFVPGEAQVAR 87.265 4.26E-08 12812000 729.26 523.22 781.36 640.9 692.52 617.48 536.21 899.56 726.18 765.91 TRUE FALSE 739.47189 580.346929 584.0960043 599.7955426 786.8529485 726.9814082 637.9530483 823.1367631 795.9328337 609.8171216 1.212612542 0.951673721 0.957821589 0.983566255 1.290309702 1.192130202 1.046138302 1.349809203 1.305199224 1 9.252232847 -6.751965449 24.99412527 1.206941883 1.016179798 0.310842483 0.123747369 226.6747896 598010.3469 0.036742885 0.046806441 1.77E-07 6.751965449 -0.190762085 TDVSNFDEEFTGEAPT(ph)LSPPR ddPTM_K562_Paclitaxel_30min_R1 1 TDVSNFDEEFTGEAPTLSPPR 21 0 Q16512;Q16512-2 Q16512 PKN1 Serine/threonine-protein kinase N1 1 TDVSNFDEEFT(0.007)GEAPT(0.654)LS(0.339)PPR 86.32 0.0011687 4332400 722.51 774.65 1112.1 910.99 633.13 667.6 799.23 1131.1 529.24 1353 TRUE FALSE 732.6273691 859.2289067 831.3366007 852.5631788 719.373025 785.9894864 950.8797202 1035.005995 580.0758667 1077.257857 0.680085426 0.797607463 0.771715514 0.791419782 0.667781646 0.729620565 0.882685342 0.96077832 0.538474482 1 10.07314791 -7.751518357 24.61405679 0.842216065 0.742873421 0.152392784 0.121979785 345.0253466 856009.491 0.045259605 0.034611324 1.77E-08 7.751518357 -0.099342644 TDVSNFDEEFTGEAPT(ph)LSPPRDAR ddPTM_K562_Paclitaxel_30min_R1 1 TDVSNFDEEFTGEAPTLSPPRDAR 24 1 Q16512;Q16512-2 Q16512 PKN1 Serine/threonine-protein kinase N1 1 TDVSNFDEEFT(0.001)GEAPT(0.566)LS(0.434)PPRDAR 92.238 0.00087413 27280000 798.69 584.08 759.48 819.88 504.99 505.51 648.69 763.62 451.54 788.37 TRUE FALSE 809.8741242 647.8518296 567.7398809 767.2965664 573.7781876 595.1551008 771.7755411 698.7457146 494.9124345 627.6997613 1.290225318 1.03210463 0.904476815 1.22239423 0.914096552 0.948152505 1.229529767 1.113184611 0.788454075 1 9.29393085 -5.263100166 6.727240166 1.024347288 1.294714009 0.273034953 0.133338843 0.153153268 47.42451983 0.032789513 0.190737553 5.46E-06 5.263100166 0.270366721 TEAQDLCRAS(ph)PEPPGPESSSR ddPTM_K562_Paclitaxel_30min_R1 3 TEAQDLCRASPEPPGPESSSR 21 1 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 TEAQDLCRAS(1)PEPPGPESSSR;TEAQDLCRAS(1)PEPPGPESSSR;TEAQDLCRAS(1)PEPPGPESSSR 146.67 8.27E-18 726876000 6196.7 5599.3 7950.8 6778 5981.2 5084.4 5313.3 6113 6406 7738.5 TRUE FALSE 6283.472918 6210.65051 5943.522206 6343.289417 6795.940703 5986.046951 6321.470938 5593.662494 7021.324923 6161.389452 1.019814275 1.007995122 0.964639916 1.029522556 1.102988337 0.971541727 1.025981394 0.907857316 1.139568433 1 12.58904001 -4.776390236 10.76923366 1.014135543 2.473669314 0 0.063088781 580972.3353 94523.56474 0.014908547 20874555.65 1.67E-05 4.776390236 1.459533771 TEARSS(ph)DEENGPPS(ph)SPDLDR ddPTM_K562_Paclitaxel_30min_R1 1 TEARSSDEENGPPSSPDLDR 20 1 Q96B36-3;Q96B36;Q96B36-2 Q96B36-3 AKT1S1 Proline-rich AKT1 substrate 1 2 T(0.061)EARS(0.427)S(0.512)DEENGPPS(0.545)S(0.455)PDLDR 87.485 0.0017381 41666000 1129 1115.1 1731.7 1155.8 740.98 959.97 999.66 1240.3 761.29 1345.5 TRUE FALSE 1144.809483 1236.850389 1294.510918 1081.672161 841.9140209 1130.207201 1189.340266 1134.928773 834.415306 1071.286361 1.06863069 1.154546939 1.208370576 1.0096947 0.78589073 1.055000084 1.110198271 1.05940747 0.778891001 1 10.06512846 -6.392986036 5.87702919 0.972943796 1.143560117 0.352880121 0.107991984 0.278991067 12.14040633 0.032021393 0.047771122 4.05E-07 6.392986036 0.170616321 TEASKHIMQY(ph)IAAVT(ph)NPSQR ddPTM_K562_Paclitaxel_30min_R1 1 TEASKHIMQYIAAVTNPSQR 20 1 F8WEW9;A0A3B3IU30;B0I1T2-2;B0I1T2-3;B0I1T2-4;B0I1T2 F8WEW9 MYO1G Unconventional myosin-Ig;Minor histocompatibility antigen HA-2 2 TEASKHIMQY(0.934)IAAVT(0.992)NPS(0.073)QR 58.635 0.012695 81846000 1036.5 1392.6 1250.6 1047.8 1323.7 1186.8 1168.2 1346.6 1378 1175.1 TRUE FALSE 1051.014198 1544.648777 934.8705628 980.5987978 1504.01035 1397.262317 1389.859852 1232.197925 1510.363057 935.613975 1.123341705 1.650946671 0.999205429 1.048080537 1.607511635 1.493417535 1.485505656 1.316993929 1.614301515 1 9.869769601 -6.762917759 24.99998877 1.442455381 1.222491096 0.1622775 0.233754774 71.96089924 1216895.837 0.06979268 0.083479894 1.73E-07 6.762917759 -0.219964286 TEDEEFLIQHLLQAPS(ph)PPR ddPTM_K562_Paclitaxel_30min_R1 1 TEDEEFLIQHLLQAPSPPR 19 0 Q9ULL5;Q9ULL5-2 Q9ULL5 PRR12 Proline-rich protein 12 1 TEDEEFLIQHLLQAPS(1)PPR 122.6 3.07E-06 7099900 1877 1793.4 2519.2 2107.3 1749.2 1805.5 1955.9 2317.4 681.86 2997.8 TRUE FALSE 1903.283791 1989.209477 1883.196803 1972.14721 1987.470654 2125.680075 2327.021815 2120.522405 747.3556996 2386.846714 0.79740512 0.833404787 0.788989419 0.826256331 0.832676285 0.890580891 0.974935592 0.88842002 0.313114242 1 11.2208902 TEDGGWEWS(ph)DDEFDEESEEGKAAISQLR ddPTM_K562_Paclitaxel_30min_R1 1 TEDGGWEWSDDEFDEESEEGKAAISQLR 28 1 C9JIG9;O95747 C9JIG9 OXSR1 Serine/threonine-protein kinase OSR1 1 T(0.009)EDGGWEWS(0.964)DDEFDEES(0.025)EEGKAAIS(0.003)QLR 51.966 0.0093346 15715000 681.26 529.64 1301.9 932.51 644.84 584.09 493.08 793.38 565.7 970.55 TRUE FALSE 690.7997419 587.4678863 973.2192433 872.7029824 732.6781252 687.6701605 586.6393559 725.9774169 620.0380126 772.7513773 0.893948251 0.760228844 1.259420911 1.129345101 0.948142115 0.88989833 0.759156662 0.939470881 0.802377105 1 9.59386051 -7.135458335 3.59141266 0.866806063 1.012569117 0.16368492 0.138723872 0.455338029 10.65202092 0.050861221 0.051122873 7.32E-08 7.135458335 0.145763053 TEDSIRDYEDGMEVDT(ph)TPTVAGQFEDADVDH ddPTM_K562_Paclitaxel_30min_R1 1 TEDSIRDYEDGMEVDTTPTVAGQFEDADVDH 31 1 P54105;E9PMI6;J3KN38 P54105 CLNS1A Methylosome subunit pICln 1 TEDSIRDYEDGMEVDT(0.339)T(0.339)PT(0.323)VAGQFEDADVDH 104.51 1.24E-11 18320000 983.47 897.78 1304 899.79 884.15 691.16 941.02 937.24 850.82 1151.2 TRUE FALSE 997.2416143 995.8026565 974.7890723 842.0814967 1004.586199 813.7275216 1119.573633 857.6156119 932.5450626 916.5848081 1.087997101 1.086427189 1.063501232 0.918716402 1.096010091 0.88778203 1.221462131 0.935664223 1.017412742 1 9.840124564 -6.016119933 23.75734564 1.013626113 1.084150209 0.110761236 0.090069732 804.516737 1185694.327 0.022905794 0.041280245 9.64E-07 6.016119933 0.070524096 TEDVMFIS(ph)DNESFNPSLWEEQR ddPTM_K562_Paclitaxel_30min_R1 1 TEDVMFISDNESFNPSLWEEQR 22 0 Q96RT1-7;Q96RT1-6;Q96RT1-4;Q96RT1-5;Q96RT1-3;Q96RT1-9;Q96RT1-2;Q96RT1;Q96RT1-8 Q96RT1-7 ERBB2IP Protein LAP2 1 T(0.001)EDVMFIS(0.565)DNES(0.427)FNPS(0.007)LWEEQR 100.93 0.0002112 3843500 830.79 699.6 897.16 809.36 716.95 677.29 672.73 897.92 814.42 1105.5 TRUE FALSE 842.4236232 775.9846939 670.6608621 757.4512722 814.6107281 797.3978719 800.3770056 821.6360914 892.6486799 880.1984932 0.957083692 0.881601934 0.761942752 0.860545977 0.925485256 0.905929603 0.909314219 0.933466823 1.014144749 1 9.781685092 -8.276585501 0.815965427 1.010271827 0.868310413 0.491593758 0.048829771 0.561003159 0.692829512 0.048058029 0.021221394 5.29E-09 8.276585501 -0.141961413 TEEARPSPAPGPGT(ph)PT(ph)GTPTRTPSR ddPTM_K562_Paclitaxel_30min_R1 1 TEEARPSPAPGPGTPTGTPTRTPSR 25 2 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 2 T(0.001)EEARPS(0.001)PAPGPGT(0.95)PT(0.643)GT(0.226)PT(0.053)RT(0.069)PS(0.056)R 64.619 0.0016534 14730000 2380 2017.8 2852.6 2458.8 1928.8 1997.9 2047.1 2518 1785.9 2894.9 TRUE FALSE 2413.327343 2238.110228 2132.425849 2301.103573 2191.535215 2352.199513 2435.526538 2304.080183 1957.443675 2304.917791 1.047034021 0.971015208 0.925163517 0.998345183 0.950808408 1.020513409 1.056665252 0.9996366 0.849246634 1 11.17049958 TEEARPSPAPGPGT(ph)PTGTPTR ddPTM_K562_Paclitaxel_30min_R1 4 TEEARPSPAPGPGTPTGTPTR 21 1 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 TEEARPS(0.001)PAPGPGT(0.83)PT(0.061)GT(0.087)PT(0.02)R;TEEARPSPAPGPGT(0.955)PT(0.019)GT(0.006)PT(0.019)R;TEEARPSPAPGPGT(0.946)PT(0.048)GT(0.005)PT(0.001)R;TEEARPSPAPGPGT(0.946)PT(0.048)GT(0.005)PT(0.001)R 131.26 4.35E-10 222112000 2260.58 1938.84 2760.62 2088.48 1753.97 1706.64 1800.26 2478.54 1160.55 2543.08 TRUE FALSE 2292.235094 2150.529108 2063.667338 1954.53424 1992.890409 2009.288642 2141.849937 2267.972556 1272.026013 2024.7989 1.132080373 1.062095158 1.019196197 0.965297956 0.984241155 0.992339852 1.057808722 1.120097683 0.628223382 1 10.98356291 -2 0.348663141 0.950754731 3.005296943 0.180997553 0.121084082 118.2858284 1.66888037 0.101073254 159.5409777 0.01 2 2.054542212 TEEARPSPAPGPGT(ph)PTGTPTRTPSR ddPTM_K562_Paclitaxel_30min_R1 1 TEEARPSPAPGPGTPTGTPTRTPSR 25 2 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 TEEARPSPAPGPGT(0.89)PT(0.067)GT(0.02)PT(0.011)RT(0.011)PS(0.002)R 70.889 0.0069502 6053600 697.06 622.14 814.74 650.73 591.8 556.1 529.48 571.14 784.55 546.65 TRUE FALSE 706.8209906 690.0673491 609.0488104 608.9950904 672.4131793 654.716527 629.9460659 522.6180921 859.909533 435.2424299 1.623970785 1.585478119 1.399332346 1.39920892 1.544916426 1.504257126 1.447345255 1.20075171 1.975702445 1 8.765675395 -11.22957923 3.791934077 0.999425775 1.503652332 0.399415548 0.190372464 135653022.8 251544854.7 983387.95 0.045001392 5.89E-12 11.22957923 0.504226557 TEEARPSPAPGPGTPT(ph)GTPTRTPSR ddPTM_K562_Paclitaxel_30min_R1 1 TEEARPSPAPGPGTPTGTPTRTPSR 25 2 Q4KMP7 Q4KMP7 TBC1D10B TBC1 domain family member 10B 1 TEEARPSPAPGPGT(0.177)PT(0.35)GT(0.35)PT(0.083)RT(0.029)PS(0.01)R 69.398 0.010064 8506600 649.76 461.6 860.12 814.8 541.74 673.89 549.83 698.99 863.59 834.59 TRUE FALSE 658.8586447 511.999049 642.9720682 762.5423749 615.5341597 793.3949296 654.1573722 639.6064365 946.5416781 664.5000999 0.991510227 0.770502592 0.967602666 1.147542905 0.926311614 1.193972627 0.984435326 0.962537758 1.424441739 1 9.376125606 -6.020997892 6.22756341 1.081393728 0.877253673 0.255760811 0.146100025 0.21058429 31.53911278 0.037630361 0.070524915 9.53E-07 6.020997892 -0.204140055 TEELIES(ph)PKLESSEGEIIQTVDR ddPTM_K562_Paclitaxel_30min_R1 2 TEELIESPKLESSEGEIIQTVDR 23 1 F8VXG7;Q99590-2;Q99590;A0A0A0MTP7 F8VXG7 SCAF11 Protein SCAF11 1 TEELIES(1)PKLESSEGEIIQTVDR;T(0.001)EELIES(0.984)PKLES(0.013)S(0.002)EGEIIQTVDR 103.2 5.73E-05 75039000 1491.08 1253.45 2764.8 1702.2 1348.12 1005.63 1132.21 1776.74 1204.61 2185.41 TRUE FALSE 1511.95972 1390.30591 2066.792045 1593.028511 1531.756768 1183.964361 1347.040937 1625.794847 1320.318173 1740.022242 0.86893126 0.799016171 1.187796337 0.915521924 0.880308729 0.68043059 0.774151562 0.934352911 0.758793848 1 10.76489003 -6.862170281 3.637155415 0.819013486 0.95072352 0.145845601 0.125962816 0.413224599 10.53651854 0.04104773 0.047838048 1.37E-07 6.862170281 0.131710034 TEFLDLDNSPLSPPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 TEFLDLDNSPLSPPSPR 17 0 Q8NCF5 Q8NCF5 NFATC2IP NFATC2-interacting protein 1 TEFLDLDNSPLSPPS(1)PR;TEFLDLDNS(0.001)PLS(0.002)PPS(0.997)PR;TEFLDLDNS(0.001)PLSPPS(0.999)PR 221.51 1.48E-30 102547900 4781.3 4736.6 6588.6 5513.8 4887.8 5052.8 4459.3 5930.1 4799.3 6723.9 TRUE FALSE 4848.252952 5253.758006 4925.226443 5160.169547 5553.601111 5948.843135 5305.428896 5426.30099 5260.294209 5353.565489 0.905611963 0.98135682 0.919989949 0.963875301 1.037364934 1.111192746 0.991008498 1.013586366 0.982577727 1 12.38628434 -6.641143788 4.427930014 1.025956402 0.940518992 0.51653145 0.038349341 0.183209555 6.217292768 0.011998795 0.015644836 2.28E-07 6.641143788 -0.08543741 TEFLHSQNSLS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 TEFLHSQNSLSPR 13 0 F6RY50;Q96FS4 F6RY50 SIPA1 Signal-induced proliferation-associated protein 1 1 TEFLHS(0.001)QNS(0.079)LS(0.92)PR;TEFLHS(0.001)QNS(0.292)LS(0.707)PR;TEFLHS(0.004)QNS(0.156)LS(0.84)PR 95.067 0.008748 116023800 8529.2 8752.4 12143 10397.1 9287.7 7867.2 7913.4 10219.7 6250.7 11387.1 TRUE FALSE 8648.635115 9708.016631 9077.349467 9730.276542 10552.84198 9262.337459 9414.926339 9351.472696 6851.107664 9066.402769 0.953921344 1.070768294 1.001207392 1.073223503 1.163950273 1.021611073 1.038441218 1.031442451 0.755658869 1 13.14631454 -8.633963131 8.664413612 0.878845056 1.048895556 0.441065397 0.075058618 0.212861208 15.30904826 0.048747964 0.018271161 2.32E-09 8.633963131 0.1700505 TEGDGNS(ph)DPEST(ph)FIPGLK ddPTM_K562_Paclitaxel_30min_R1 1 TEGDGNSDPESTFIPGLK 18 0 Q9BZA7-5;Q9BZA7-3;Q9BZA8;Q9BZA7 Q9BZA7-5 PCDH11X;PCDH11Y Protocadherin-11 X-linked;Protocadherin-11 Y-linked 2 T(0.152)EGDGNS(0.848)DPES(0.047)T(0.953)FIPGLK 76.82 0.023993 18301000 6622.4 4639.7 13554 8446.5 6689.4 5533.4 3392.7 4760.2 4081.4 5785.1 TRUE FALSE 6715.134032 5146.278136 10132.12507 7904.779295 7600.609532 6514.670797 4036.447114 4355.791298 4473.436706 4606.093444 1.457880547 1.117276104 2.199721996 1.716156954 1.650120568 1.414359234 0.876327665 0.945658474 0.971199729 1 12.16932796 -7.617211124 3.428486619 0.942631899 1.63160206 0.616827723 0.25278543 0.172981975 4.014756409 0.109844738 0.082798004 2.41E-08 7.617211124 0.68897016 TEGTAHSSNTS(ph)DVDFTGASSAK ddPTM_K562_Paclitaxel_30min_R1 1 TEGTAHSSNTSDVDFTGASSAK 22 0 Q9Y483-2;Q9Y483-3;Q9Y483-4;Q9Y483 Q9Y483-2 MTF2 Metal-response element-binding transcription factor 2 1 TEGTAHS(0.001)S(0.04)NT(0.255)S(0.703)DVDFTGASSAK 78.456 0.0013269 9504800 2253.5 2457.7 3832.3 2586.5 1789.6 1636.8 1809.8 2519.8 2440.9 3347.9 TRUE FALSE 2285.055953 2726.039997 2864.788468 2420.613467 2033.373818 1927.063498 2153.200102 2305.727262 2675.359351 2665.596142 0.857240118 1.022675549 1.074727121 0.908094602 0.762821414 0.722939033 0.807774317 0.864994973 1.003662674 1 11.3802425 -6.518910069 24.50337031 0.843327332 0.989118815 0.228395614 0.099402526 162.5518155 1003630.463 0.030159735 0.0399005 3.03E-07 6.518910069 0.145791483 TEIMS(ph)PLYQDEAPK ddPTM_K562_Paclitaxel_30min_R1 1 TEIMSPLYQDEAPK 14 0 Q8IY81 Q8IY81 FTSJ3 pre-rRNA processing protein FTSJ3 1 TEIMS(1)PLYQDEAPK 136.81 1.85E-05 13053000 1451.8 1206 2305.3 1823.5 1110.5 1064.7 1184 1832.8 668.88 2268 TRUE FALSE 1472.129679 1337.675158 1723.298503 1706.548872 1261.768901 1253.509596 1408.657819 1677.0922 733.1289126 1805.780355 0.815231861 0.740774012 0.954323431 0.945047866 0.698738857 0.694165042 0.780082592 0.928735433 0.405990081 1 10.81840671 -6.77266288 24.99172091 0.746305954 0.861516363 0.107173177 0.1587104 496.3088081 1105142.728 0.047593282 0.054446685 1.69E-07 6.77266288 0.11521041 TEMDKSPFNSPS(ph)PQDSPR ddPTM_K562_Paclitaxel_30min_R1 1 TEMDKSPFNSPSPQDSPR 18 1 A0A286YEX4;P08651-4;P08651-5;P08651-3;P08651-6;P08651-2;P08651 A0A286YEX4 NFIC Nuclear factor 1 C-type 1 TEMDKSPFNS(0.024)PS(0.961)PQDS(0.015)PR 105.68 0.00067076 18906000 1871.5 1717.4 2922 1810.9 1472.5 1188.9 1388.2 2181.2 1485.3 2583.6 TRUE FALSE 1897.706774 1904.91154 2184.304961 1694.756979 1673.07943 1399.734722 1651.603703 1995.893445 1627.969701 2057.060902 0.922533102 0.926035558 1.061857215 0.823873021 0.813334903 0.68045371 0.802894898 0.970264635 0.79140569 1 11.00636879 -6.290836588 23.61932153 0.829734496 0.965731323 0.286140025 0.09284321 423.8400452 340535.0492 0.026638875 0.039521421 5.12E-07 6.290836588 0.135996827 TEPAAEAEAASGPSESPS(ph)PPAAEELPGSHAEPPVPAQGEAPGEQAR ddPTM_K562_Paclitaxel_30min_R1 1 TEPAAEAEAASGPSESPSPPAAEELPGSHAEPPVPAQGEAPGEQAR 46 0 P55884-2;P55884 P55884-2 EIF3B Eukaryotic translation initiation factor 3 subunit B 1 TEPAAEAEAAS(0.022)GPS(0.216)ES(0.238)PS(0.262)PPAAEELPGS(0.262)HAEPPVPAQGEAPGEQAR 66.009 2.49E-10 98248000 921.93 885.36 1326.8 1198 988.68 1085 925.23 1230.1 1123.8 1170.2 TRUE FALSE 934.8398644 982.0265989 991.8329303 1121.165642 1123.354954 1277.409516 1100.787562 1125.595327 1231.746011 931.7125977 1.003356471 1.054001632 1.064526693 1.203338503 1.205688275 1.371033856 1.181466866 1.208092849 1.322023566 1 9.86374119 -6.23340045 2.153975637 1.231346233 1.027289149 0.418123955 0.092798349 0.281071425 2.542672615 0.026595718 0.052695934 5.84E-07 6.23340045 -0.204057084 TEPSS(ph)PLSDPSDIIR ddPTM_K562_Paclitaxel_30min_R1 1 TEPSSPLSDPSDIIR 15 0 Q9ULJ3;Q9ULJ3-2 Q9ULJ3 ZBTB21 Zinc finger and BTB domain-containing protein 21 1 TEPS(0.261)S(0.734)PLS(0.005)DPSDIIR 151.07 3.12E-05 18182000 2108.5 1832.1 3330 2592.7 2482.1 2095.3 2034 3198.1 1700.7 2754.2 TRUE FALSE 2138.025505 2032.134874 2489.300315 2426.415826 2820.204042 2466.872036 2419.940882 2926.401443 1864.059834 2192.892528 0.974979612 0.926691503 1.135167494 1.106490991 1.286065781 1.124939779 1.103538295 1.334493782 0.850046142 1 11.09861939 -5.76600369 24.84306277 1.134919858 0.950835527 0.203160449 0.128487271 125.4355643 682749.6122 0.031509678 0.06933862 1.71E-06 5.76600369 -0.18408433 TES(ph)PATAAETASEELDNR ddPTM_K562_Paclitaxel_30min_R1 1 TESPATAAETASEELDNR 18 0 C9JWF0;C9IYK2;C9JJ64;C9JR83;Q9NTJ3-2;Q9NTJ3 C9JWF0 SMC4 Structural maintenance of chromosomes protein 4 1 T(0.227)ES(0.773)PATAAETASEELDNR 238.05 1.03E-52 224920000 797.76 812.22 1383.7 1092.8 878.61 903.34 648.73 949.16 485.86 908.24 TRUE FALSE 808.9311013 900.9009264 1034.367822 1022.712699 998.291557 1063.534665 771.8231309 868.5229335 532.5290239 723.1401895 1.118636626 1.245817809 1.430383537 1.41426616 1.380495195 1.470717132 1.067321582 1.201043651 0.736411876 1 9.498131548 -8.297461507 1.601283573 0.901261334 1.341047741 0.588494325 0.141369984 0.281389649 1.295417076 0.11360344 0.042874211 5.04E-09 8.297461507 0.439786406 TES(ph)SFQDTK ddPTM_K562_Paclitaxel_30min_R1 1 TESSFQDTK 9 0 Q0Z7S8 Q0Z7S8 FABP9 Fatty acid-binding protein 9 1 T(0.077)ES(0.461)S(0.461)FQDTK 91.636 0.015889 38964000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 TES(ph)VPSDINNPVDR ddPTM_K562_Paclitaxel_30min_R1 2 TESVPSDINNPVDR 14 0 A0A2R8Y4X0;A0A0A0MQW1;A0A2R8Y5H9;Q8IVT5-4;Q8IVT5-3;Q8IVT5-2;Q8IVT5;A8MY87 A0A2R8Y4X0 KSR1 Kinase suppressor of Ras 1 1 T(0.024)ES(0.973)VPS(0.002)DINNPVDR;T(0.007)ES(0.993)VPSDINNPVDR 230.97 6.68E-35 84245000 3477.4 2940 4186.4 3446 2835.6 2748.8 2363.5 3530.5 3068.6 4307.9 TRUE FALSE 3526.094329 3260.999142 3129.491543 3224.988984 3221.856727 3236.261085 2811.961787 3230.561988 3363.352741 3429.947615 1.02803154 0.950743133 0.91240214 0.940244384 0.939331176 0.943530761 0.819826453 0.941869192 0.980584288 1 11.74397083 -5.293161314 3.081092884 0.929224704 1.039897817 0.267370191 0.045301607 0.417364542 6.216868124 0.011645285 0.107978904 5.09E-06 5.293161314 0.110673113 TESPRT(ph)SGVLSQPHLPFFR ddPTM_K562_Paclitaxel_30min_R1 1 TESPRTSGVLSQPHLPFFR 19 1 O14733;O14733-4;O14733-3;O14733-2 O14733 MAP2K7 Dual specificity mitogen-activated protein kinase kinase 7 1 T(0.068)ES(0.257)PRT(0.337)S(0.337)GVLSQPHLPFFR 83.964 0.025771 12447000 745.76 776.07 725.78 865.21 555.85 752.05 438.46 582.99 1560 751.21 TRUE FALSE 756.2029409 860.8039471 542.5478627 809.7193031 631.5661806 885.4155082 521.6554961 533.4613606 1709.84497 598.1129897 1.264314526 1.439199553 0.907099281 1.353789864 1.055931223 1.480348234 0.872168813 0.891907332 2.85873238 1 9.22427424 -8.716681461 24.99999961 1.929391148 1.163426922 0.303259898 0.467564805 125.3686652 70026.0061 0.287532167 0.108675755 1.92E-09 8.716681461 -0.765964227 TFDETVSTYVPLAQQVEDFHKRT(ph)PNR ddPTM_K562_Paclitaxel_30min_R1 1 TFDETVSTYVPLAQQVEDFHKRTPNR 26 2 Q9ULW0;Q9ULW0-2 Q9ULW0 TPX2 Targeting protein for Xklp2 1 TFDETVST(0.001)YVPLAQQVEDFHKRT(0.998)PNR 63.726 0.028326 9330500 2040 1905.2 2809.5 1882.5 1394.2 1399.3 1469.2 2001.9 1378.5 2903.9 TRUE FALSE 2068.566294 2113.216179 2100.206978 1761.764876 1584.113644 1647.446208 1747.97303 1831.8261 1510.911084 2312.083586 0.894676259 0.913987795 0.908361181 0.761981481 0.685145491 0.712537478 0.756016366 0.792283683 0.653484629 1 11.17497784 -6.275122263 5.924844412 0.750772873 0.907144949 0.332143249 0.089085269 0.157678319 22.72578054 0.023310982 0.036793377 5.31E-07 6.275122263 0.156372077 TFEGVDPQTTSMR ddPTM_K562_Paclitaxel_30min_R1 1 TFEGVDPQTTSMR 13 0 P31150 P31150 GDI1 Rab GDP dissociation inhibitor alpha 0 79.23 0.015731 52155000 1127.1 1181.4 903.68 1216.5 1103.5 992.73 1229.1 1359.3 1214 1198.1 FALSE TRUE 1142.882877 1310.389247 675.5348074 1138.479135 1253.815382 1168.776727 1462.315309 1243.818981 1330.610124 953.9265623 1.198082664 1.373679378 0.708162278 1.193466227 1.314373068 1.225227154 1.532943275 1.303893853 1.394876898 1 9.897734395 -6.60523356 4.959785729 1.31703466 1.09618979 0.163344403 0.200286974 0.336828836 14.5880505 0.05953227 0.07785893 2.48E-07 6.60523356 -0.22084487 TFLEGDWT(ph)SPSK ddPTM_K562_Paclitaxel_30min_R1 1 TFLEGDWTSPSK 12 0 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 TFLEGDWT(0.498)S(0.498)PS(0.003)K 179.67 0.0013332 24429000 5543.8 4972 9338.3 6410 4675.8 4351.1 4159.5 6290.1 4333.5 7135.1 TRUE FALSE 5621.430304 5514.859774 6980.73067 5998.89129 5312.723122 5122.706493 4948.743411 5755.716743 4749.752038 5680.962703 0.98952072 0.970761482 1.22879361 1.055963857 0.935180074 0.901732111 0.871109998 1.013158692 0.836082243 1 12.47191972 -6.765179137 5.171469749 0.921932814 1.067889602 0.397618354 0.081419137 0.179395021 13.76001133 0.025397694 0.030826415 1.72E-07 6.765179137 0.145956788 TFLEGDWTS(ph)PSK ddPTM_K562_Paclitaxel_30min_R1 1 TFLEGDWTSPSK 12 0 Q8NDT2;Q8NDT2-2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 TFLEGDWT(0.285)S(0.713)PS(0.002)K 88.803 0.019854 25520000 4473.3 3935.8 8104.1 5792.2 4692 3761.1 4029.7 5145.1 3353.1 6876.9 TRUE FALSE 4535.940001 4365.523954 6058.119725 5420.714217 5331.129836 4428.078277 4794.314539 4707.99164 3675.180237 5475.384005 0.828424088 0.797300052 1.106428283 0.990015351 0.973654054 0.808724698 0.875612475 0.859846841 0.671218719 1 12.41874443 -7.262291311 24.98396451 0.836354219 0.94340051 0.158193458 0.110062428 143.2641793 4201362.196 0.038863289 0.036240052 5.47E-08 7.262291311 0.107046291 TFNKDTVIIVS(ph)EPS(ph)EDEESQGLPTMAR ddPTM_K562_Paclitaxel_30min_R1 2 TFNKDTVIIVSEPSEDEESQGLPTMAR 27 1 D6RAY8;Q9H4L7;Q9H4L7-2 D6RAY8 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 2 TFNKDTVIIVS(0.996)EPS(0.862)EDEES(0.129)QGLPT(0.012)MAR;TFNKDT(0.001)VIIVS(0.925)EPS(0.879)EDEES(0.113)QGLPT(0.081)MAR 66.556 0.0011455 526810000 6624.8 5772.4 12192.8 8162.7 6469.2 5367 4603.3 7667.5 6870.8 7451.7 TRUE FALSE 6717.567639 6402.650153 9114.576841 7639.180957 7350.414564 6318.762094 5476.752144 7016.098016 7530.77104 5933.03945 1.132230402 1.079151792 1.536240728 1.287566183 1.238895279 1.065012655 0.923093836 1.182547002 1.269293943 1 12.53455566 -7.197589618 5.176779696 1.089183161 1.264582518 0.25416179 0.14276193 0.336236958 18.19236565 0.051269134 0.050861254 6.34E-08 7.197589618 0.175399357 TFNKDTVIIVSEPS(ph)EDEESQGLPTMAR ddPTM_K562_Paclitaxel_30min_R1 2 TFNKDTVIIVSEPSEDEESQGLPTMAR 27 1 D6RAY8;Q9H4L7;Q9H4L7-2 D6RAY8 SMARCAD1 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 1 TFNKDTVIIVS(0.012)EPS(0.988)EDEESQGLPTMAR;TFNKDTVIIVSEPS(0.992)EDEES(0.005)QGLPT(0.002)MAR 108.68 1.96E-09 36017000 12276.5 10693.9 20065.5 14172.9 11352.8 10752.9 9199.4 13819.6 11517.4 14585 TRUE FALSE 12448.40888 11861.49617 14999.71636 13263.91363 12899.24356 12659.77584 10944.93813 12645.53872 12623.69773 11612.56899 1.071977173 1.021436012 1.291679418 1.142203214 1.110800166 1.09017874 0.942507909 1.088952731 1.087071925 1 13.50339955 -7.529492708 24.96439616 1.034088353 1.128529283 0.271372901 0.075599422 249.5092474 941760.8622 0.03019451 0.023447268 2.95E-08 7.529492708 0.09444093 TFPLAHS(ph)PQAECEDQLDAQER ddPTM_K562_Paclitaxel_30min_R1 3 TFPLAHSPQAECEDQLDAQER 21 0 A0A3B3IT55;A0A0G2JQF4;A0A0G2JNT7;Q7Z3B3-4;Q7Z3B3-2;Q7Z3B3;A0A1W2PRB5;A0A0J9YVS1;A0A0G2JQF5;A0A0G2JNB1 A0A3B3IT55 KANSL1 KAT8 regulatory NSL complex subunit 1 1 T(0.013)FPLAHS(0.987)PQAECEDQLDAQER;T(0.001)FPLAHS(0.999)PQAECEDQLDAQER;TFPLAHS(1)PQAECEDQLDAQER 172.6 7.23E-20 205202000 4406.78 3851.34 5151.6 4723.23 4088.87 4203.32 3958.83 4868.6 4069.24 5369.4 TRUE FALSE 4468.488516 4271.842326 3851.014866 4420.303168 4645.843319 4948.719784 4709.997326 4454.982041 4460.108684 4275.113333 1.045232762 0.999234872 0.90079831 1.033961634 1.086718166 1.157564584 1.101724553 1.042073436 1.043272619 1 12.06174695 -6.516906594 7.110580033 1.078270381 0.980725345 0.377459876 0.051449702 0.136757657 42.00199153 0.015684091 0.021611216 3.04E-07 6.516906594 -0.097545035 TFS(ph)ATVR ddPTM_K562_Paclitaxel_30min_R1 4 TFSATVR 7 0 H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9;Q9Y2V2 H3BTK3 CARHSP1 Calcium-regulated heat stable protein 1 1 T(0.078)FS(0.911)AT(0.012)VR;TFS(0.94)AT(0.06)VR;T(0.077)FS(0.908)AT(0.015)VR;T(0.041)FS(0.948)AT(0.012)VR 122.33 0.00069899 97732000 14713.5 11999.5 16515.2 12679.7 11244.5 10563.5 11037.4 14608.9 14208.9 16656.7 TRUE FALSE 14919.5344 13309.64599 12345.7335 11866.48079 12776.19127 12436.78841 13131.68903 13367.78276 15573.72833 13262.0554 1.124979043 1.003588478 0.930906495 0.894769358 0.963364342 0.937772316 0.990169973 1.00797217 1.17430729 1 13.69501677 -8.539294628 22.63792264 1.088482674 0.973756885 0.274860163 0.069785803 101.5503595 140031.6171 0.047742617 0.018063407 2.89E-09 8.539294628 -0.114725789 TFS(ph)DESNVL ddPTM_K562_Paclitaxel_30min_R1 1 TFSDESNVL 9 0 H7C113;Q8NB49 H7C113 ATP11C Phospholipid-transporting ATPase IG 1 T(0.366)FS(0.634)DESNVL 130.66 3.25E-07 0 2412.4 2345.4 3758.7 2724.4 2307.4 2223.8 2007.7 2744 2463.4 2639.8 TRUE FALSE 2446.181043 2601.478704 2809.769698 2549.669178 2621.706945 2618.159706 2388.650594 2510.880072 2700.020577 2101.807311 1.163846481 1.237734159 1.336835058 1.21308417 1.247358371 1.245670663 1.136474586 1.194629051 1.28461851 1 11.0374147 -13.84729283 0.339585637 5.77E-11 1.237982621 0.60258374 0.055252154 116.1157261 2.091593209 82.26817922 0.046641402 1.42E-14 13.84729283 1.237982621 TFS(ph)LTEVR ddPTM_K562_Paclitaxel_30min_R1 3 TFSLTEVR 8 0 O95239;O95239-2 O95239 KIF4A Chromosome-associated kinesin KIF4A 1 T(0.198)FS(0.686)LT(0.115)EVR;TFS(0.864)LT(0.136)EVR;T(0.022)FS(0.976)LT(0.002)EVR 133.99 0.00011247 269340000 8908.9 6973.2 10069.7 7477.3 6140.6 5918.6 6264 7824.1 6860.3 9238 TRUE FALSE 9033.652086 7734.557558 7527.479695 6997.739445 6977.053681 6968.180609 7452.5613 7159.393868 7519.262468 7355.290529 1.228184264 1.051563841 1.023410247 0.951388585 0.948576219 0.947369867 1.013224599 0.973366564 1.022293061 1 12.84456661 -5.092133491 1.391909498 0.978369714 1.413330966 0.882906609 0.026920832 0.59011017 0.767221891 0.008088009 0.40059021 8.09E-06 5.092133491 0.434961251 TFS(ph)S(ph)SS(ph)S(ph)S(ph)KK ddPTM_K562_Paclitaxel_30min_R1 1 TFSSSSSSKK 10 1 A0A087WVP4;A0A087X1R1;P53814-5;P53814;P53814-6;A0A096LNK9;B5MCI0;P53814-2;H7BZZ8 A0A087WVP4;H7BZZ8 SMTN Smoothelin 5 T(0.02)FS(0.963)S(0.556)S(0.556)S(0.915)S(0.996)S(0.996)KK 47.915 0.028258 8359900 69.005 0 0 68.993 0 150.66 0 0 62.959 184.69 TRUE FALSE 69.9712829 0 0 64.56809778 0 177.3774356 0 0 69.00649326 147.0500766 0.475833026 0 0 0.439089181 0 1.206238308 0 0 0.469272066 1 7.200163726 -15 0.33235865 8.401390164 0.250318979 0.255100131 0.366713074 524.940479 4.52704643 2747.618705 0.309776764 1.00E-15 15 -8.151071185 TFVNITPAEVGVLVGKDR ddPTM_K562_Paclitaxel_30min_R1 1 TFVNITPAEVGVLVGKDR 18 1 P07737;I3L3D5 P07737 PFN1 Profilin-1 0 88.781 0.0040382 0 358.4 287.32 476.91 415.3 348.76 281.88 306.99 303.68 441.19 367.49 FALSE TRUE 363.4187058 318.6905693 356.5081722 388.6645168 396.2670166 331.8674602 365.2397499 277.8804885 483.5682708 292.5953363 1.242052284 1.089185403 1.218434226 1.328334627 1.35431761 1.134219924 1.248276048 0.94970922 1.652686187 1 8.192762964 -10.31185166 16.34311252 0.999987548 1.234533048 0.146532493 0.176300023 0 0 0.160307815 0.038880356 4.88E-11 10.31185166 0.2345455 TGADTTAAGPLFQQRPYPS(ph)PGAVLR ddPTM_K562_Paclitaxel_30min_R1 1 TGADTTAAGPLFQQRPYPSPGAVLR 25 1 H7C053;O60828-5;O60828-4;O60828-2;O60828 H7C053 PQBP1 Polyglutamine-binding protein 1 1 TGADTTAAGPLFQQRPY(0.004)PS(0.996)PGAVLR 63.713 0.0030944 119830000 766.22 556.41 823.71 676.99 698.94 616.1 622.18 667.88 750.92 863.8 TRUE FALSE 776.949444 617.1607255 615.754223 633.5708915 794.1474612 725.3566845 740.235407 611.1394252 823.0492212 687.7570858 1.129685844 0.897352769 0.895307712 0.921213179 1.154691791 1.054669882 1.07630357 0.888597788 1.196715 1 9.425755288 -6.73485105 24.99974606 1.056625325 0.951667044 0.193510845 0.099908693 361.8964038 340272.4408 0.028872065 0.037263055 1.84E-07 6.73485105 -0.104958281 TGDLGIPPNPEDRS(ph)PS(ph)PEPIYNSEGK ddPTM_K562_Paclitaxel_30min_R1 2 TGDLGIPPNPEDRSPSPEPIYNSEGK 26 1 Q15637-6;Q15637-4;Q15637-7;Q15637-3;Q15637-2;Q15637;Q15637-5 Q15637-6 SF1 Splicing factor 1 2 T(0.001)GDLGIPPNPEDRS(0.999)PS(0.998)PEPIY(0.001)NS(0.001)EGK;TGDLGIPPNPEDRS(0.995)PS(0.986)PEPIY(0.009)NS(0.01)EGK 75.758 0.00021885 235040000 11155.5 9236.8 21251 13214.5 8851.2 8885.8 7728.9 12107.4 10076.4 15047.5 TRUE FALSE 11311.71142 10245.30506 15885.92222 12366.98112 10056.88329 10461.57187 9195.418427 11078.8008 11044.28324 11980.81124 0.944152378 0.855142849 1.325947125 1.032232365 0.839415887 0.873193948 0.76751217 0.924712073 0.921831003 1 13.54843798 -6.726236143 8.496619939 0.877302649 1.047213158 0.255425739 0.125776902 0.348846186 75.18209775 0.038606743 0.049414046 1.88E-07 6.726236143 0.16991051 TGDLGIPPNPEDRS(ph)PS(ph)PEPIYNSEGKR ddPTM_K562_Paclitaxel_30min_R1 3 TGDLGIPPNPEDRSPSPEPIYNSEGKR 27 2 Q15637-6;Q15637-4;Q15637-7;Q15637-3;Q15637-2;Q15637;Q15637-5 Q15637-6 SF1 Splicing factor 1 2 TGDLGIPPNPEDRS(0.985)PS(0.983)PEPIY(0.015)NS(0.016)EGKR;TGDLGIPPNPEDRS(1)PS(1)PEPIYNSEGKR;TGDLGIPPNPEDRS(0.999)PS(0.999)PEPIYNSEGKR 92.518 1.43E-06 245263000 3622.3 3511.69 7193.8 4458.8 3267.99 2869.31 3104.85 4366.1 3796.1 5572.6 TRUE FALSE 3673.023376 3895.10819 5377.636218 4172.832525 3713.145566 3378.141841 3693.979079 3995.172553 4160.732366 4436.901061 0.827835312 0.87788935 1.212025273 0.940483564 0.836878153 0.761374165 0.832558362 0.90044211 0.9377564 1 12.11533667 -5.525230458 24.99998524 0.920873479 0.840348718 0.068069795 0.115138523 211.9342555 2253004.035 0.032426489 0.086941333 2.98E-06 5.525230458 -0.080524761 TGGIGDSRPPSFHPHAGGGS(ph)QENLDNDTETDSLVSAQR ddPTM_K562_Paclitaxel_30min_R1 2 TGGIGDSRPPSFHPHAGGGSQENLDNDTETDSLVSAQR 38 1 Q92997-2;Q92997 Q92997-2 DVL3 Segment polarity protein dishevelled homolog DVL-3 1 T(0.001)GGIGDS(0.002)RPPS(0.009)FHPHAGGGS(0.987)QENLDNDT(0.001)ETDSLVSAQR;TGGIGDS(0.001)RPPS(0.004)FHPHAGGGS(0.995)QENLDNDTETDSLVSAQR 87.111 2.86E-10 89971000 2893.6 2523.9 3562.6 3021.3 2347.8 2165.7 2397.5 2797 2821.5 3260.7 TRUE FALSE 2934.119328 2799.467937 2663.177568 2827.527341 2667.610109 2549.756487 2852.413109 2559.377392 3092.517682 2596.16755 1.130173331 1.078307884 1.02581113 1.089115893 1.02751847 0.98212324 1.098701472 0.985829051 1.191185708 1 11.34216778 -5.379919497 3.033487727 1.049410458 1.133992895 0.141043588 0.060204187 0.56161942 8.274259607 0.014449673 0.096864706 4.17E-06 5.379919497 0.084582437 TGKEYIPGQPPLS(ph)QSSDSSPTRNSEPAGLETPEAK ddPTM_K562_Paclitaxel_30min_R1 2 TGKEYIPGQPPLSQSSDSSPTRNSEPAGLETPEAK 35 2 V9GYZ6;P07814 V9GYZ6 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 1 TGKEYIPGQPPLS(0.188)QS(0.188)S(0.188)DS(0.188)S(0.188)PT(0.041)RNS(0.019)EPAGLET(0.001)PEAK;TGKEYIPGQPPLS(0.182)QS(0.182)S(0.182)DS(0.182)S(0.182)PT(0.042)RNS(0.039)EPAGLET(0.007)PEAK 63.403 7.93E-05 64550000 4736.8 3575.9 11375.6 5479.8 3635.4 2934.7 2522.2 4358.3 8278.7 6727.8 TRUE FALSE 4803.129814 3966.328855 8503.689088 5128.350155 4130.603028 3455.12784 3000.774283 3988.035211 9073.906125 5356.670667 0.896663266 0.740446651 1.587495222 0.957376414 0.771113866 0.64501405 0.56019391 0.744498861 1.693945118 1 12.38712089 -6.518846805 24.88795193 0.860113357 1.079927778 0.036625596 0.35760435 480.5552076 2966334.419 0.107812738 0.142635137 3.03E-07 6.518846805 0.219814421 TGKEYIPGQPPLSQS(ph)S(ph)DSSPTR ddPTM_K562_Paclitaxel_30min_R1 1 TGKEYIPGQPPLSQSSDSSPTR 22 1 V9GYZ6;P07814 V9GYZ6 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 2 TGKEYIPGQPPLS(0.383)QS(0.546)S(0.474)DS(0.37)S(0.203)PT(0.024)R 100.7 0.00030587 11814000 4725.8 3177.2 8337.3 4989.1 3994.9 3976.2 3405.6 4703.3 4678.4 5871.4 TRUE FALSE 4791.97578 3524.097441 6232.445501 4669.121456 4539.073014 4681.323241 4051.794822 4303.725308 5127.781224 4674.805457 1.025064214 0.753849005 1.333198902 0.99878412 0.970965114 1.001394236 0.866730147 0.920621264 1.096897244 1 12.19069061 -6.519100804 24.85881039 0.969469022 1.035180667 0.035043793 0.141137396 568.8147267 3742809.828 0.041682076 0.055014647 3.03E-07 6.519100804 0.065711645 TGKEYIPGQPPLSQS(ph)SDS(ph)SPTR ddPTM_K562_Paclitaxel_30min_R1 1 TGKEYIPGQPPLSQSSDSSPTR 22 1 V9GYZ6;P07814 V9GYZ6 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 2 TGKEYIPGQPPLS(0.318)QS(0.472)S(0.21)DS(0.604)S(0.337)PT(0.059)R 95.287 0.000434 14093000 3451 2719.5 6127 3771.2 2935.7 3070.5 2906.1 4217.2 3963 4669.9 TRUE FALSE 3499.324647 3016.424207 4580.163072 3529.332111 3335.592042 3615.010063 3457.517304 3858.922537 4343.663857 3718.171817 0.94114119 0.811265416 1.231832013 0.949211679 0.897105407 0.97225471 0.929897131 1.037854819 1.168225696 1 11.86037772 -8.488810941 5.869148379 1.090685955 0.964738448 0.178815882 0.107619738 0.298069976 30.76590556 0.064079274 0.028320161 3.24E-09 8.488810941 -0.125947507 TGKEYIPGQPPLSQS(ph)SDSSPTRNSEPAGLETPEAK ddPTM_K562_Paclitaxel_30min_R1 1 TGKEYIPGQPPLSQSSDSSPTRNSEPAGLETPEAK 35 2 V9GYZ6;P07814 V9GYZ6 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 1 TGKEYIPGQPPLS(0.076)QS(0.246)S(0.076)DS(0.246)S(0.246)PT(0.076)RNS(0.031)EPAGLET(0.002)PEAK 58.111 0.0002925 57289000 4800.5 3336.1 10435 5289.6 3699 3072.2 2384.6 4610.3 8562.3 5631.5 TRUE FALSE 4867.721811 3700.34668 7800.555192 4950.348731 4202.866425 3617.011534 2837.065402 4218.626238 9384.747172 4483.797209 1.085624881 0.825270749 1.739720783 1.104052771 0.937345341 0.806684907 0.632737225 0.940860178 2.093035598 1 12.13050531 -11.78366671 7.517889302 0.997578616 1.102431448 0.00463543 0.427314264 0.017953446 0.000516624 0.428323614 0.101661585 1.65E-12 11.78366671 0.104852832 TGKEYIPGQPPLSQSSDS(ph)SPTR ddPTM_K562_Paclitaxel_30min_R1 4 TGKEYIPGQPPLSQSSDSSPTR 22 1 V9GYZ6;P07814 V9GYZ6 EPRS Bifunctional glutamate/proline--tRNA ligase;Glutamate--tRNA ligase;Proline--tRNA ligase 1 TGKEYIPGQPPLS(0.017)QS(0.017)S(0.017)DS(0.437)S(0.437)PT(0.077)R;TGKEYIPGQPPLS(0.017)QS(0.017)S(0.017)DS(0.432)S(0.432)PT(0.084)R;TGKEYIPGQPPLS(0.002)QS(0.005)S(0.028)DS(0.437)S(0.437)PT(0.092)R;TGKEYIPGQPPLS(0.006)QS(0.02)S(0.02)DS(0.418)S(0.418)PT(0.117)R 155.46 5.34E-18 309050000 12570.1 10325.8 21275.8 14497.5 10563.9 9940.5 8177.1 12118.8 12955.8 16490 TRUE FALSE 12746.12018 11453.20576 15904.46115 13567.69524 12002.88203 11703.3081 9728.662038 11089.2323 14200.26248 13129.32895 0.970812768 0.872337483 1.21136893 1.033388324 0.91420377 0.891386616 0.740986998 0.844615314 1.081568032 1 13.68050556 -6.816920004 5.029531331 0.893051544 1.024952559 0.168324767 0.115601183 0.325721957 17.00363928 0.03766149 0.043816127 1.52E-07 6.816920004 0.131901015 TGLKY(ph)CT(ph)MFKNCLFS(ph)PPY(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 TGLKYCTMFKNCLFSPPYPR 20 2 K7ENF0 K7ENF0 NARS 4 T(0.033)GLKY(0.984)CT(0.984)MFKNCLFS(1)PPY(1)PR 40.669 0.029792 44161000 494.74 672.9 875.83 658.56 827.06 563.02 656.03 727.72 647.79 846.46 TRUE FALSE 501.6678864 746.3694976 654.7158844 616.3229092 939.7195742 662.8636918 780.5082678 665.8956437 710.0131239 673.9509874 0.744368501 1.107453675 0.971459196 0.914492182 1.394344087 0.98354881 1.158108353 0.988047582 1.053508545 1 9.396499866 -5.256883894 24.48064514 1.066340238 0.744368326 0.353669414 0.129347717 395.7579733 2126655.078 0.031485546 0.244661338 5.53E-06 5.256883894 -0.321971912 TGLSIRSS(ph)QEEEPVDPQLMR ddPTM_K562_Paclitaxel_30min_R1 1 TGLSIRSSQEEEPVDPQLMR 20 1 P40425 P40425 PBX2 Pre-B-cell leukemia transcription factor 2 1 T(0.36)GLS(0.017)IRS(0.12)S(0.503)QEEEPVDPQLMR 62.556 0.018536 27788000 912.99 911.09 1124.9 922.91 863.15 726.73 700.92 791.35 857.5 1240.6 TRUE FALSE 925.7746768 1010.565887 840.9050824 863.7186834 980.7256433 855.6053617 833.915911 724.119878 939.8667064 987.765039 0.937241794 1.023083271 0.851320961 0.874417143 0.992873411 0.866203326 0.844245218 0.733089196 0.951508374 1 9.948024097 -7.41730855 9.398935922 0.859301459 0.93248083 0.084380275 0.081420239 0.724985706 59.63259199 0.028394063 0.025016926 3.83E-08 7.41730855 0.073179371 TGLYPASTVCPTREDS(ph)PPQAVEDLDGK ddPTM_K562_Paclitaxel_30min_R1 2 TGLYPASTVCPTREDSPPQAVEDLDGK 27 1 B7WNQ9;P15976-3;P15976-2;P15976 B7WNQ9 GATA1 Erythroid transcription factor 1 TGLY(0.005)PAS(0.084)T(0.084)VCPT(0.031)REDS(0.796)PPQAVEDLDGK;TGLY(0.001)PAS(0.068)T(0.068)VCPT(0.059)REDS(0.804)PPQAVEDLDGK 80.102 2.56E-05 64295000 2320.3 2079.6 3807.6 2915.8 1980.28 1662.69 2056.89 2766.1 1534.97 4000.8 TRUE FALSE 2352.791359 2306.657761 2846.324288 2728.793639 2250.027662 1957.544726 2447.17414 2531.10254 1682.410727 3185.434764 0.73860918 0.724126511 0.893543425 0.856647158 0.706348687 0.614529843 0.768238662 0.794586211 0.528157332 1 11.63727458 TGQPAQPAPSAQQPPRPPAS(ph)PDEPSVAASSVGSSR ddPTM_K562_Paclitaxel_30min_R1 3 TGQPAQPAPSAQQPPRPPASPDEPSVAASSVGSSR 35 1 O94964-2 O94964-2 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form 1 T(0.001)GQPAQPAPS(0.408)AQQPPRPPAS(0.428)PDEPS(0.092)VAAS(0.028)S(0.013)VGS(0.015)S(0.015)R;TGQPAQPAPS(0.155)AQQPPRPPAS(0.794)PDEPS(0.025)VAAS(0.01)S(0.01)VGS(0.002)S(0.002)R;TGQPAQPAPS(0.001)AQQPPRPPAS(0.897)PDEPS(0.096)VAAS(0.003)S(0.003)VGSSR 85.044 6.63E-09 219662000 2320.06 2079.49 3144.71 2903.9 2240.57 2289.44 2089.49 2359.82 2175.16 3098.05 TRUE FALSE 2352.547998 2306.535751 2350.789067 2717.656851 2545.773567 2695.440039 2485.95982 2159.338561 2384.093837 2466.665709 0.953736045 0.935082424 0.953022965 1.101753205 1.032070766 1.092746386 1.00782194 0.875407865 0.966524904 1 11.26834649 -11.01692298 5.895354642 1.000000012 0.992717795 0.001007379 0.066735306 1.13E-08 1.90E-09 0.071651697 0.017378061 9.62E-12 11.01692298 -0.007282216 TGS(ph)ESSQTGTSTTSSR ddPTM_K562_Paclitaxel_30min_R1 1 TGSESSQTGTSTTSSR 16 0 E7EX17;P23588-2;P23588 E7EX17 EIF4B Eukaryotic translation initiation factor 4B 1 T(0.242)GS(0.738)ES(0.02)SQTGTSTTSSR 170.09 3.02E-08 8297500 1405.3 1683 2429.9 1798.8 1282.2 1469 1170.5 1705 1306.9 2088 TRUE FALSE 1424.978536 1866.755632 1816.441692 1683.433019 1456.857348 1729.506524 1392.596265 1560.149608 1432.433584 1662.464454 0.857148273 1.122884539 1.092619868 1.012612941 0.876323908 1.04032692 0.837669799 0.93845592 0.861632609 1 10.69910778 -6.626575807 6.104155888 0.92437037 1.036930664 0.22020544 0.087180706 0.282357983 14.41589232 0.025105797 0.032515265 2.36E-07 6.626575807 0.112560295 TGSGS(ph)PFAGNS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 2 TGSGSPFAGNSPAR 14 0 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 2 T(0.21)GS(0.046)GS(0.744)PFAGNS(1)PAR;T(0.002)GS(0.016)GS(0.982)PFAGNS(1)PAR 117.07 0.011332 27724000 4773.2 4993.2 6440 6262.8 4615.1 4736.8 4545.9 6024.3 3349.7 6919.6 TRUE FALSE 4840.039527 5538.374462 4814.142351 5861.132039 5243.754754 5576.804972 5408.460794 5512.498112 3671.453652 5509.381722 0.878508655 1.005262431 0.873808096 1.063845697 0.951786429 1.012237898 0.981681987 1.000565652 0.666400304 1 12.42767471 TGSGS(ph)PFAGNSPAR ddPTM_K562_Paclitaxel_30min_R1 2 TGSGSPFAGNSPAR 14 0 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 T(0.446)GS(0.075)GS(0.479)PFAGNSPAR;TGS(0.007)GS(0.991)PFAGNS(0.002)PAR 89.484 0.015394 31168000 1705.23 1789.01 2332 1659.73 1628.35 1420.41 1585.01 1833.96 1456.49 1909.99 TRUE FALSE 1729.108481 1984.340162 1743.257758 1553.282346 1850.158838 1672.29977 1885.757373 1678.153651 1596.392372 1520.73299 1.137023063 1.304857707 1.146327311 1.021403729 1.21662307 1.099666925 1.24003187 1.103516306 1.049751918 1 10.57055115 -14.99999995 0.089339328 0.4693509 1.284136803 0.315767905 0.077251654 269.8130687 1.673950099 26.80619157 1.911527945 1.00E-15 14.99999995 0.814785903 TGSGSPFAGNS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 1 TGSGSPFAGNSPAR 14 0 Q9UPT8;M0QY97 Q9UPT8 ZC3H4 Zinc finger CCCH domain-containing protein 4 1 TGSGSPFAGNS(1)PAR 156.72 0.00012234 18914000 1129 888.1 1642.2 1135.2 1013 976.93 1044.3 1100 876.17 1381.4 TRUE FALSE 1144.809483 985.0657614 1227.6063 1062.393353 1150.98775 1150.174819 1242.450473 1006.548134 960.3300433 1099.869922 1.040858979 0.895620238 1.116137713 0.965926363 1.046476249 1.045737133 1.129634013 0.915151978 0.873130562 1 10.1031172 -8.305735859 24.89608747 0.920605856 1.030425779 0.318589 0.069792198 510.1272484 286705.8216 0.037194093 0.017867592 4.95E-09 8.305735859 0.109819923 TGSSPNSVSSS(ph)PTNSAITQLR ddPTM_K562_Paclitaxel_30min_R1 2 TGSSPNSVSSSPTNSAITQLR 21 0 A0A1B0GWI0;A0A1B0GVV8;A0JP08;A0A1B0GV02;O60315-2;O60315;U3KQ51;E7ESP8;A0A1X7SC99;E7EUW9;A0A1B0GW50 A0A1B0GWI0 ZEB2 Zinc finger E-box-binding homeobox 2 1 TGSSPNSVSS(0.232)S(0.766)PT(0.001)NSAITQLR;TGSSPNSVSS(0.153)S(0.758)PT(0.088)NSAITQLR 228.11 4.86E-46 58322000 1697.89 1618.49 1938.13 1802.55 1484.56 1445.58 1245.82 1669.67 1534.62 1859.93 TRUE FALSE 1721.665698 1795.202212 1448.825111 1686.942511 1686.782206 1701.933316 1482.207841 1527.821112 1682.027108 1480.875245 1.162600094 1.21225756 0.978357303 1.139152347 1.139044097 1.149275283 1.000899871 1.031701433 1.135833092 1 10.53223439 -2.000000003 0.095790091 0.953638797 1.542712496 0.252479438 0.068250027 206.8668596 1.416118725 1.050824369 16.00426156 0.01 2.000000003 0.5890737 TGTITTFEHAHNMR ddPTM_K562_Paclitaxel_30min_R1 4 TGTITTFEHAHNMR 14 0 P13639 P13639 EEF2 Elongation factor 2 0 ;;; 180.24 1.40E-06 91115400 15319.5 13957.9 19480.1 16911.3 14176.8 13734.4 14703.7 17019.5 14898.9 20130.6 FALSE TRUE 15534.02026 15481.87072 14562.10783 15826.68491 16107.92018 16170.003 17493.65032 15573.58724 16330.00592 16027.97267 0.969181854 0.965928196 0.90854334 0.987441471 1.004987999 1.008861403 1.09144498 0.971650474 1.018844133 1 13.96830433 -6.603836798 2.904850436 1.018583936 0.949354593 0.461469451 0.032590111 0.232963036 3.970882111 0.010229165 0.014063876 2.49E-07 6.603836798 -0.069229342 TGTIVVEGHELHDEDIR ddPTM_K562_Paclitaxel_30min_R1 1 TGTIVVEGHELHDEDIR 17 0 J3KR24;A0A0A0MSX9;P41252 J3KR24 IARS "Isoleucine--tRNA ligase, cytoplasmic" 0 99.915 0.0018809 10716000 2102.2 1811.6 2240.3 1892.6 1478.5 1541.5 1728 2251.9 1552.2 2202 FALSE TRUE 2131.637286 2009.396614 1674.708557 1771.217107 1679.896731 1814.863381 2055.878979 2060.587039 1701.295745 1753.231191 1.21583354 1.146110464 0.955212619 1.010258724 0.958171826 1.035153487 1.172622863 1.175308225 0.970377298 1 10.77580054 -5.564297224 6.690991407 1.042327401 1.199505722 0.383738542 0.075948578 0.188314248 22.08062721 0.021379834 0.058904248 2.73E-06 5.564297224 0.157178321 TGTLQDLIQHGS(ph)PINNECHPSLER ddPTM_K562_Paclitaxel_30min_R1 2 TGTLQDLIQHGSPINNECHPSLER 24 0 A0A2R8YH03;Q5VWN6 A0A2R8YH03 FAM208B Protein FAM208B 1 TGTLQDLIQHGS(1)PINNECHPSLER;TGTLQDLIQHGS(1)PINNECHPSLER 116.57 5.17E-08 84888000 5244.7 4231.6 6731.4 6082.6 4490.8 4037 5062.9 5565.5 5310 5946.3 TRUE FALSE 5318.141981 4693.620398 5031.974817 5692.489261 5102.52299 4752.905268 6023.558845 5092.676036 5820.049226 4734.440796 1.123288306 0.99137799 1.062844596 1.202357259 1.077745654 1.003900032 1.272285177 1.075665798 1.229300244 1 12.20897832 -6.028382362 24.13098298 1.126098512 1.049777672 0.092606648 0.090755513 907.3017874 771398.107 0.023586512 0.040987188 9.37E-07 6.028382362 -0.076320839 TGVTST(ph)S(ph)DSEEEGDDQEGEKKR ddPTM_K562_Paclitaxel_30min_R1 1 TGVTSTSDSEEEGDDQEGEKKR 22 2 O75475-3;O75475-2;O75475 O75475-3 PSIP1 PC4 and SFRS1-interacting protein 2 T(0.007)GVT(0.082)S(0.28)T(0.508)S(0.497)DS(0.626)EEEGDDQEGEKKR 63.488 0.020925 10600000 4951.1 2822.1 10826 4808.5 3114.3 2466.6 2092.6 4389 4508.9 6334.4 TRUE FALSE 5020.430675 3130.226422 8092.842406 4500.104332 3538.520386 2904.016877 2489.659926 4016.127055 4941.999991 5043.445803 0.995436626 0.620652337 1.604625631 0.892267808 0.701607695 0.575800155 0.493642645 0.796306179 0.979885615 1 12.30019404 -6.521548905 24.16178614 0.73187952 1.064974096 0.215451333 0.267032102 47.32112863 859792.4205 0.079742764 0.104508892 3.01E-07 6.521548905 0.333094576 TGVTSTS(ph)DS(ph)EEEGDDQEGEKKR ddPTM_K562_Paclitaxel_30min_R1 1 TGVTSTSDSEEEGDDQEGEKKR 22 2 O75475-3;O75475-2;O75475 O75475-3 PSIP1 PC4 and SFRS1-interacting protein 2 T(0.001)GVT(0.022)S(0.109)T(0.162)S(0.707)DS(0.999)EEEGDDQEGEKKR 87.748 0.0013237 12142000 4191.1 2486.1 9770.1 3876 2514.2 2276.6 2033.3 4062.4 3992 5321.2 TRUE FALSE 4249.788331 2757.540805 7303.51742 3627.410708 2856.676606 2680.323045 2419.10806 3717.273763 4375.449437 4236.736519 1.003080629 0.650864361 1.723854525 0.856180386 0.674263456 0.632638596 0.570983834 0.877390828 1.032740511 1 12.0487377 -6.503505324 24.96091732 0.771613977 1.113691469 0.210252686 0.282722897 1133.332826 1460198.481 0.080964483 0.118055023 3.14E-07 6.503505324 0.342077492 TGYGGGFNERENVEYIEREES(ph)DGEYDEFGR ddPTM_K562_Paclitaxel_30min_R1 3 TGYGGGFNERENVEYIEREESDGEYDEFGR 30 2 O95218-2;O95218 O95218-2 ZRANB2 Zinc finger Ran-binding domain-containing protein 2 1 TGYGGGFNERENVEY(0.179)IEREES(0.82)DGEYDEFGR;TGYGGGFNERENVEY(0.178)IEREES(0.815)DGEY(0.007)DEFGR;T(0.001)GY(0.001)GGGFNERENVEY(0.411)IEREES(0.576)DGEY(0.011)DEFGR 88.541 5.53E-06 217901000 1781.02 1828.03 2546.47 2165.04 1807.57 1690.65 1751.11 1978.55 2529.24 2347.84 TRUE FALSE 1805.959775 2027.620497 1903.582154 2026.184025 2053.791636 1990.46304 2083.373981 1810.459828 2772.184803 1869.348919 0.966090255 1.084666686 1.018312919 1.083898251 1.098666822 1.064789467 1.114491768 0.968497539 1.482968094 1 10.86832016 -8.720105003 24.99998358 1.241489411 1.055435565 0.293623043 0.118598916 145.2322512 87839.9572 0.071947896 0.027193093 1.91E-09 8.720105003 -0.186053847 THAPSALS(ph)PPR ddPTM_K562_Paclitaxel_30min_R1 1 THAPSALSPPR 11 0 H9KVB4;O15417-2;O15417 H9KVB4 TNRC18 Trinucleotide repeat-containing gene 18 protein 1 THAPS(0.226)ALS(0.774)PPR 98.253 0.0078209 6082800 1428.5 1599.2 1952.5 1653.7 1261.1 1697.1 1232.4 1844.1 925.6 1982.1 TRUE FALSE 1448.503407 1773.806064 1459.567227 1547.639084 1432.883171 1998.056857 1466.241466 1687.432194 1014.508016 1578.146932 0.917850789 1.123980301 0.924861429 0.980668563 0.907952955 1.266077839 0.929090591 1.069249105 0.64284763 1 10.62401582 -8.734813596 24.99998161 0.821423315 1.01639424 0.250539987 0.133879108 244.693669 229753.5218 0.084658334 0.031977824 1.84E-09 8.734813596 0.194970925 THDHQLESSLS(ph)PVEVFAK ddPTM_K562_Paclitaxel_30min_R1 2 THDHQLESSLSPVEVFAK 18 0 Q9H410-4;Q9H410;Q5JW53 Q9H410-4 DSN1 Kinetochore-associated protein DSN1 homolog 1 THDHQLES(0.002)S(0.041)LS(0.957)PVEVFAK;THDHQLESSLS(1)PVEVFAK 111.35 0.00039046 45184000 4044.8 3528.8 7017.8 4730.8 3587.7 2841.6 3187.7 4706.7 4271.4 5830.8 TRUE FALSE 4101.439679 3914.086318 5246.069595 4427.387662 4076.40548 3345.517862 3792.549434 4306.836457 4681.687055 4642.479759 0.883458818 0.843102506 1.130014532 0.953668705 0.878066398 0.720631653 0.816923203 0.92770172 1.008445335 1 12.1806799 -2.001341199 22.48040754 0.909892982 0.000487482 0 0.109158004 0 0 0.026843313 0 0.009969165 2.001341199 -0.9094055 THLGTGMERS(ph)PGAMER ddPTM_K562_Paclitaxel_30min_R1 2 THLGTGMERSPGAMER 16 1 Q05397-5;Q05397;Q05397-7;E7ESA6;H0YBP1;E5RGA6;E5RIK4;E5RH08;E5RJP0;E5RI72;E5RG66;E5RH01;E5RH48;E5RG54;E5RFW9 Q05397-5 PTK2 Focal adhesion kinase 1 1 THLGT(0.001)GMERS(0.998)PGAMER;THLGT(0.003)GMERS(0.997)PGAMER 69.045 0.026243 54626000 878.82 914.36 1270.92 966.45 962.33 972.3 996.07 890.11 1091.18 967.07 TRUE FALSE 891.1261914 1014.192917 950.0605275 904.4662227 1093.415638 1144.723753 1185.069083 814.4895996 1195.992715 769.9806032 1.157335896 1.317166839 1.233875923 1.174661049 1.420056082 1.486691676 1.539089527 1.057805348 1.55327642 1 9.588678293 -6.760554123 24.99999762 1.362717188 1.228582988 0.092146057 0.180685169 54.18004082 1530043.076 0.05253895 0.063916309 1.74E-07 6.760554123 -0.1341342 THLMSEEEWR ddPTM_K562_Paclitaxel_30min_R1 1 THLMSEEEWR 10 0 P33552 P33552 CKS2 Cyclin-dependent kinases regulatory subunit 2 0 169.76 0.00014888 8750600 645.55 806.02 690.86 712.04 558.82 766.49 678.26 721.11 581.69 789.88 FALSE TRUE 654.5896917 894.0239894 516.4438486 666.3729414 634.9407449 902.4162394 806.9562942 659.8472045 637.5639236 628.9020224 1.040845264 1.421563228 0.821183317 1.059581489 1.009602008 1.434907517 1.283119255 1.049205092 1.013773053 1 9.296691465 -8.501778162 22.95065189 1.015087245 1.153270313 0.105024966 0.179089376 638.6734405 694681.9015 0.103563389 0.048748444 3.15E-09 8.501778162 0.138183067 THLMSEEEWRR ddPTM_K562_Paclitaxel_30min_R1 3 THLMSEEEWRR 11 1 P33552 P33552 CKS2 Cyclin-dependent kinases regulatory subunit 2 0 ;; 93.556 0.0066145 28805100 5559.19 5583.97 7072.4 6202.21 5070.42 5210.96 5457.67 6504.57 6612.2 6833.88 FALSE TRUE 5637.035812 6193.646728 5286.88515 5804.428011 5761.097047 6135.05059 6493.234392 5951.966178 7247.331354 5441.131505 1.036004332 1.138301238 0.971651787 1.066768558 1.058804964 1.127532129 1.193361047 1.093883905 1.331952986 1 12.40969098 -7.369754429 3.003677567 1.16282485 1.054169231 0.232392035 0.086784708 0.370796096 6.429781322 0.031237556 0.027115759 4.27E-08 7.369754429 -0.108655619 THLMSESEWR ddPTM_K562_Paclitaxel_30min_R1 2 THLMSESEWR 10 0 Q9BZU3;Q5T179;P61024 Q9BZU3 CKS1B Cyclin-dependent kinases regulatory subunit;Cyclin-dependent kinases regulatory subunit 1 0 ; 171.33 0.00015096 36717000 2428.1 2194.5 3206 2916.9 2514.3 2510.5 2408.7 2714.4 2426.4 3402.5 FALSE TRUE 2462.100891 2434.102931 2396.605649 2729.82309 2856.790227 2955.701926 2865.738251 2483.794777 2659.466561 2709.068632 0.908836661 0.898501759 0.884660366 1.007661104 1.054528554 1.091039884 1.057831543 0.916844537 0.98169036 1 11.40358123 -6.294021644 6.213079909 1.01915559 0.897305284 0.588222223 0.04532699 0.145909465 18.39792014 0.014568097 0.022288364 5.08E-07 6.294021644 -0.121850306 THNDIIHNENMR ddPTM_K562_Paclitaxel_30min_R1 5 THNDIIHNENMR 12 0 E7EQR4;P15311 E7EQR4 EZR Ezrin 0 ;;;; 179.94 9.48E-05 40883700 3110.45 2673.41 4623.06 3979.67 3211.59 2913.49 2702.92 3388.33 3532.59 3757.12 FALSE TRUE 3154.005897 2965.301945 3455.911326 3724.431779 3649.062931 3430.156544 3215.78496 3100.470217 3871.911054 2991.416882 1.054351841 0.991270044 1.155275731 1.245039366 1.219844333 1.146666172 1.075003949 1.036455412 1.294340176 1 11.54661326 -5.769055747 24.96897424 1.151460182 1.022810935 0.23793781 0.088253721 206.6648139 677522.9013 0.02321211 0.049823263 1.70E-06 5.769055747 -0.128649246 THPYS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 THPYSPK 7 0 M0QZ39;M0R1C6;H0YD59;E9PME6;M0QXT0;B1AQP1;B4DLJ1;Q15853-4;P22415-2;Q15853-3;P22415;Q15853-2;Q15853 M0QZ39 USF2;USF1 Upstream stimulatory factor 2;Upstream stimulatory factor 1 1 THPYS(1)PK;THPYS(1)PK 102.62 0.0088722 9513100 6129.1 4877 11499.1 6994.7 5184.3 4863.9 4209.5 6234.8 4531.1 8579.5 TRUE FALSE 6214.92631 5409.487353 8596.009986 6546.091249 5890.489431 5726.444372 5008.23065 5705.114824 4966.3324 6830.993191 0.909812986 0.791903491 1.258383627 0.95829275 0.862318153 0.838303335 0.733162881 0.835180868 0.72702933 1 12.73787964 -6.843427094 3.200676823 0.813908058 0.987460137 0.237506168 0.129537377 0.344547999 7.072574003 0.042515913 0.050348522 1.43E-07 6.843427094 0.173552079 THS(ph)QGGYGSQGYK ddPTM_K562_Paclitaxel_30min_R1 1 THSQGGYGSQGYK 13 0 K7ERS0;K7EPH2;K7ER00;Q9Y285-2;Q9Y285 K7ERS0 FARSA Phenylalanine--tRNA ligase alpha subunit 1 T(0.209)HS(0.791)QGGYGSQGYK 97.095 0.0073884 6154400 1821.5 1131.8 2771.6 1941.6 1746.5 1461.1 1322.9 1816.1 1713.4 2905.9 TRUE FALSE 1847.00662 1255.373752 2071.875301 1817.074466 1984.402868 1720.20557 1573.913369 1661.810969 1877.979726 2313.675985 0.798299603 0.5425884 0.895490689 0.785362548 0.857683998 0.743494587 0.680265249 0.718255702 0.811686571 1 11.17597112 -9.106792542 4.680006105 0.999978785 0.75267752 0.393155166 0.09233303 0.712448396 29.48493024 0.089620342 0.02339868 7.82E-10 9.106792542 -0.247301265 THS(ph)TSSSLGSGESPFSR ddPTM_K562_Paclitaxel_30min_R1 1 THSTSSSLGSGESPFSR 17 0 F8WBF9;Q5TH30;Q9UGV2-3;Q9UGV2-2;Q9UGV2 F8WBF9 NDRG3 Protein NDRG3 1 T(0.227)HS(0.719)T(0.05)S(0.004)SSLGSGESPFSR 156.29 1.04E-07 79710000 516.05 600.31 972.89 514.92 411.73 653.83 644.44 754.53 741.56 886.91 TRUE FALSE 523.2762922 665.8538759 727.2718869 481.8953359 467.8145966 769.7775703 766.7191258 690.4279669 812.7901514 706.1572552 0.741019494 0.942925773 1.02990075 0.682419295 0.662479346 1.090093693 1.085762584 0.977725516 1.151004462 1 9.463845685 -7.283444538 24.90544467 1.061077952 0.823971093 0.543439577 0.113917027 690.6008526 781619.4797 0.043085479 0.038028403 5.21E-08 7.283444538 -0.237106859 THSTSS(ph)SLGSGESPFSR ddPTM_K562_Paclitaxel_30min_R1 1 THSTSSSLGSGESPFSR 17 0 F8WBF9;Q5TH30;Q9UGV2-3;Q9UGV2-2;Q9UGV2 F8WBF9 NDRG3 Protein NDRG3 1 THSTS(0.001)S(0.5)S(0.5)LGSGESPFSR 290.39 4.72E-154 29067000 1247.8 1290.2 1992.1 1568.3 1470 1393.7 1070.3 1542 1019.1 1896.5 TRUE FALSE 1265.27305 1431.068399 1489.169717 1467.716257 1670.238887 1640.853126 1273.383838 1410.997475 1116.989108 1509.992259 0.837933468 0.947732275 0.986210166 0.972002504 1.106124139 1.08666327 0.843304878 0.934440204 0.739731679 1 10.56032544 -7.782610844 24.99584046 0.873905844 0.99191214 0.250336373 0.093067535 346.0315989 408534.2077 0.039961508 0.026971571 1.65E-08 7.782610844 0.118006296 THSTSSS(ph)LGSGESPFSR ddPTM_K562_Paclitaxel_30min_R1 1 THSTSSSLGSGESPFSR 17 0 F8WBF9;Q5TH30;Q9UGV2-3;Q9UGV2-2;Q9UGV2 F8WBF9 NDRG3 Protein NDRG3 1 THS(0.001)T(0.003)S(0.002)S(0.233)S(0.739)LGS(0.023)GESPFSR 113.67 0.0005907 31377000 1424.7 1639.5 1904.6 1741.4 1492.2 2163.5 1250.3 1796.4 1319.7 2127.8 TRUE FALSE 1444.650196 1818.506154 1423.760174 1629.714398 1695.462903 2547.166348 1487.537898 1643.784607 1446.463082 1694.153192 0.852727016 1.07340125 0.840396359 0.96196401 1.000773077 1.503504146 0.878042142 0.970269167 0.8537971 1 10.72634862 -5.245958762 22.4887232 1.012543451 0.852726547 0.063650494 0.179530774 2229.004381 3237856.879 0.046078058 0.932892446 5.68E-06 5.245958762 -0.159816904 THTTALAGRS(ph)PSPAS(ph)GR ddPTM_K562_Paclitaxel_30min_R1 1 THTTALAGRSPSPASGR 17 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 THTTALAGRS(0.992)PS(0.112)PAS(0.896)GR 197.05 4.10E-12 25939000 3735.2 4034.1 4943.4 3838.1 3712.2 3441.7 3223 3608.5 3345.2 4519.1 TRUE FALSE 3787.504324 4474.55668 3695.377531 3591.941445 4217.864488 4052.037171 3834.547425 3301.935401 3666.521407 3598.104939 1.052638649 1.243587043 1.027034395 0.998287016 1.172246102 1.126158697 1.06571306 0.917687354 1.019014584 1 11.81302155 -8.066863009 5.48158258 0.977196321 1.104108427 0.380927332 0.070876443 0.232908644 13.45297865 0.034362975 0.01981768 8.57E-09 8.066863009 0.126912106 THTTALAGRS(ph)PSPASGR ddPTM_K562_Paclitaxel_30min_R1 1 THTTALAGRSPSPASGR 17 1 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182;I3L1I8;Q9UQ35-3;A0A087X1W1 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 THTTALAGRS(0.809)PS(0.185)PAS(0.007)GR 80.733 0.010673 9439100 785.81 548.32 815.91 822.6 471.46 534.23 524.29 783.09 669.42 574.35 TRUE FALSE 796.8137644 608.1874319 609.9234295 769.8421178 535.6808339 628.9681895 623.7712905 716.5616166 733.720782 457.2971547 1.74244199 1.329961111 1.333757324 1.683461421 1.171406444 1.37540368 1.364039299 1.56694965 1.60447266 1 8.836988133 -5.25404165 24.13282349 1.399480392 1.742442259 0.234704569 0.193210647 840.5826459 2742033.231 0.0461048 0.454726068 5.57E-06 5.25404165 0.342961867 THY(ph)RLELMEK ddPTM_K562_Paclitaxel_30min_R1 1 THYRLELMEK 10 1 Q08945 Q08945 SSRP1 FACT complex subunit SSRP1 1 T(0.188)HY(0.812)RLELMEK 57.149 0.031211 38503000 3103.1 3929.7 3362.8 3626.7 2899.8 3160.5 3376.2 3686.9 2897.2 3734.3 TRUE FALSE 3146.552974 4358.757935 2513.819549 3394.099695 3294.801854 3720.970299 4016.816325 3373.674832 3175.489005 2973.24761 1.058288238 1.465992244 0.845479381 1.141546262 1.108149164 1.251483491 1.350986144 1.134676715 1.068020367 1 11.5378239 -8.848124579 2.88297238 1.006704201 1.175621266 0.113418877 0.15823087 0.544633207 8.664548283 0.148824378 0.040768468 1.42E-09 8.848124579 0.168917065 TIAHS(ph)PTSFTESSSK ddPTM_K562_Paclitaxel_30min_R1 3 TIAHSPTSFTESSSK 15 0 Q03164-2;Q03164;Q03164-3 Q03164-2 KMT2A Histone-lysine N-methyltransferase 2A;MLL cleavage product N320;MLL cleavage product C180 1 T(0.008)IAHS(0.987)PT(0.005)SFTESSSK;TIAHS(0.956)PT(0.033)S(0.009)FT(0.001)ESSSK;TIAHS(0.624)PT(0.363)S(0.011)FT(0.002)ESSSK 238.07 4.51E-46 113931000 9803.3 7651.7 14997.2 10654.1 8526.6 7642.7 7151.3 10546.4 7406.7 12566.9 TRUE FALSE 9940.576446 8487.138482 11210.97138 9970.793712 9688.067277 8998.025536 8508.221843 9650.417491 8118.146629 10005.75888 0.993485508 0.848225365 1.120451883 0.996505495 0.968249124 0.899284666 0.850332488 0.964486313 0.811347418 1 13.28854297 -7.18187371 3.763281939 0.899170642 0.988092998 0.208260909 0.078590744 0.3773157 10.22289911 0.026725696 0.026387559 6.58E-08 7.18187371 0.088922356 TICTFDSSGFESMS(ph)PIKETVSSR ddPTM_K562_Paclitaxel_30min_R1 1 TICTFDSSGFESMSPIKETVSSR 23 1 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 1 TICTFDS(0.002)S(0.001)GFES(0.016)MS(0.98)PIKETVS(0.001)SR 111.81 1.10E-05 56528000 1078.7 985.54 1611.5 1176.9 1087.8 871.46 1002.2 1059.1 1206.6 1285.8 TRUE FALSE 1093.805128 1093.14459 1204.656894 1101.418902 1235.976777 1026.001195 1192.362218 969.1228443 1322.499321 1023.753254 1.068426521 1.067781309 1.176706291 1.075863639 1.207299485 1.002195784 1.164696877 0.946637132 1.291814522 1 9.999652322 -9.922232809 11.46307647 1.000000073 1.107218976 0.10564217 0.096479822 0 0 0.084412512 0.020473041 1.20E-10 9.922232809 0.107218903 TIDLGAAAHYTGDKAS(ph)PDQNASTHTPQSSVK ddPTM_K562_Paclitaxel_30min_R1 2 TIDLGAAAHYTGDKASPDQNASTHTPQSSVK 31 1 Q14677-2;Q14677;Q14677-3 Q14677-2 CLINT1 Clathrin interactor 1 1 TIDLGAAAHY(0.014)T(0.066)GDKAS(0.829)PDQNAS(0.066)T(0.022)HT(0.003)PQSSVK;T(0.001)IDLGAAAHY(0.024)T(0.075)GDKAS(0.736)PDQNAS(0.066)T(0.066)HT(0.029)PQS(0.002)S(0.001)VK 71.927 5.47E-05 61589000 5002.6 3154.8 10397 5469 3824.2 3012.7 2553.4 4805.8 5543.2 7396.7 TRUE FALSE 5072.651834 3499.251733 7772.148762 5118.242818 4345.120784 3546.960045 3037.89432 4397.517293 6075.649128 5889.24848 0.861341112 0.594176276 1.319718261 0.869082504 0.737805647 0.602277193 0.515837348 0.746702624 1.031651008 1 12.52386783 -4.913411414 20.06698937 0.808785116 3.733651208 0 0.231156653 5572.633286 1315337.214 0.05840301 13669.81048 1.22E-05 4.913411414 2.924866091 TIEAAEALLHMES(ph)PTCLR ddPTM_K562_Paclitaxel_30min_R1 1 TIEAAEALLHMESPTCLR 18 0 Q15723-2;Q15723-3;Q15723-1;Q15723;Q15723-4;D6RHI1 Q15723-2 ELF2 ETS-related transcription factor Elf-2 1 TIEAAEALLHMES(0.625)PT(0.375)CLR 134.15 4.88E-09 13052000 2475.4 2393 3347.4 2821.7 2377.4 2052.6 2825 3167.8 1848.5 3592.8 TRUE FALSE 2510.063237 2654.275833 2502.30747 2640.728791 2701.24213 2416.59979 3361.029003 2898.675617 2026.056684 2860.585388 0.877464888 0.927878554 0.874753636 0.923142795 0.944296975 0.844792049 1.174944477 1.013315537 0.708266459 1 11.48209469 TIEAAEALLHMESPT(ph)CLR ddPTM_K562_Paclitaxel_30min_R1 1 TIEAAEALLHMESPTCLR 18 0 Q15723-2;Q15723-3;Q15723-1;Q15723;Q15723-4;D6RHI1 Q15723-2 ELF2 ETS-related transcription factor Elf-2 1 TIEAAEALLHMES(0.414)PT(0.586)CLR 126.91 3.32E-06 14291000 2999.2 3168.9 3350.7 2519.4 3032.2 3051 2854.6 3714.9 1823.7 3950.2 TRUE FALSE 3041.198053 3514.891219 2504.774344 2357.81696 3445.236976 3592.052012 3396.245448 3399.296057 1998.874534 3145.147072 0.966949393 1.117560209 0.796393392 0.749668269 1.095413632 1.142093495 1.079836768 1.080806709 0.635542468 1 11.61891177 -4.969130078 17.36469736 0.974137088 0.942312195 0 0.168324881 71303.02884 9512.05102 0.042031631 70294.4681 1.07E-05 4.969130078 -0.031824893 TIET(ph)SPSLSR ddPTM_K562_Paclitaxel_30min_R1 2 TIETSPSLSR 10 0 H3BP78;F8W7R3;Q9NVI1-2;Q9NVI1-1;Q9NVI1 H3BP78 FANCI Fanconi anemia group I protein 1 T(0.111)IET(0.385)S(0.385)PS(0.119)LSR;TIET(0.498)S(0.498)PS(0.005)LSR 152.54 0.00057625 228311000 5563 5785.1 7513.3 6270.6 5368.8 5657.4 5186.3 6249.4 5679.7 6729.3 TRUE FALSE 5640.899163 6416.736782 5616.474492 5868.431782 6100.121455 6660.660456 6170.373351 5718.474462 6225.260563 5357.864966 1.05282593 1.197629433 1.048267272 1.095292961 1.138535871 1.243155716 1.151647791 1.0673047 1.161892023 1 12.38744251 -11.24062375 3.576042384 0.999752076 1.129749671 0.288038439 0.060581954 33819164.96 85988541.88 106749.3006 0.015850664 5.75E-12 11.24062375 0.129997595 TIETS(ph)PSLSR ddPTM_K562_Paclitaxel_30min_R1 1 TIETSPSLSR 10 0 H3BP78;F8W7R3;Q9NVI1-2;Q9NVI1-1;Q9NVI1 H3BP78 FANCI Fanconi anemia group I protein 1 TIET(0.198)S(0.686)PS(0.115)LSR 149.94 0.00030785 219070000 3678.3 3568.5 4310.3 4176.8 3418.2 3301.4 3131.3 3643.5 3406.1 3823.3 TRUE FALSE 3729.807549 3958.120898 3222.111456 3908.918743 3883.816711 3886.856936 3725.447829 3333.961933 3733.271124 3044.109361 1.225254124 1.300255815 1.058474277 1.284092744 1.275846643 1.276845367 1.223821941 1.095217529 1.22639192 1 11.57180447 -9.521880276 0.652407206 0.996602897 1.234359778 0.443100955 0.075211859 1.677798194 1.210900536 0.093879175 0.030224907 3.01E-10 9.521880276 0.237756881 TIGGGDDS(ph)FNTFFSETGAGK ddPTM_K562_Paclitaxel_30min_R1 4 TIGGGDDSFNTFFSETGAGK 20 0 P68363;Q71U36;Q9BQE3;F8VVB9;F8VQQ4;Q71U36-2;F5H5D3;A0A1W2PQM2;F8VS66;F8VRZ4;F8VWV9;P0DPH8;P0DPH7;P0DPH7-2;F8VX09;P68363-2;Q6PEY2;F8VRK0;F8W0F6;F8VXZ7 P68363 TUBA1B;TUBA1A;TUBA1C;TUBA3E Tubulin alpha-1B chain;Tubulin alpha-1A chain;Tubulin alpha-1C chain;Tubulin alpha-3E chain 1 TIGGGDDS(0.953)FNT(0.044)FFS(0.003)ETGAGK;TIGGGDDS(0.997)FNT(0.003)FFSETGAGK;TIGGGDDS(1)FNTFFSETGAGK;TIGGGDDS(1)FNTFFSETGAGK 285.34 2.34E-161 96106500 7324.4 6488.9 12285.9 8841.8 6524.2 5913.26 6506.8 9148.6 6460.32 12384.9 TRUE FALSE 7426.964198 7197.380046 9184.172595 8274.726522 7412.906496 6961.893635 7741.431332 8371.369326 7080.862601 9860.850582 0.753176832 0.729894443 0.931377321 0.839149367 0.751751224 0.7060135 0.785067299 0.848950023 0.718078278 1 13.26749638 -11.14792176 4.332710791 1.000042362 0.787722883 0.483707334 0.066629879 104328044.4 3.80411563 44923.11646 0.016911137 7.11E-12 11.14792176 -0.212319479 TIGVDFLER ddPTM_K562_Paclitaxel_30min_R1 2 TIGVDFLER 9 0 Q9ULC3 Q9ULC3 RAB23 Ras-related protein Rab-23 0 ; 106.68 0.016332 40625000 4628.2 4533 5102.2 5900.3 4724.7 4875.2 4395.5 3658 4654.8 4213.4 FALSE TRUE 4693.009079 5027.92827 3814.086507 5521.881167 5368.28413 5739.748269 5229.523179 3347.230067 5101.914338 3354.706767 1.398932725 1.498768333 1.136935885 1.646010084 1.600224551 1.710953793 1.558861487 0.997771281 1.52082274 1 11.71197095 -11.51566502 7.815423705 0.999925945 1.451687296 0.288650835 0.212936062 0.000286442 1.78E-05 0.214938276 0.052121736 3.05E-12 11.51566502 0.451761351 TILETS(ph)FHQHR ddPTM_K562_Paclitaxel_30min_R1 1 TILETSFHQHR 11 0 Q5M775;Q5M775-4;Q5M775-2;Q5M775-5;Q5M775-3 Q5M775 SPECC1 Cytospin-B 1 TILET(0.163)S(0.837)FHQHR 90.731 0.012351 19154000 2925.5 2637.4 2670.9 2406.4 2382.3 2428.3 2546.7 2915.8 2702.6 3338 TRUE FALSE 2966.466026 2925.360251 1996.598262 2252.064275 2706.809593 2858.92491 3029.92303 2668.08459 2962.196806 2657.713768 1.116172126 1.100705534 0.751246536 0.847369006 1.018472954 1.075708357 1.140048664 1.003902159 1.114565775 1 11.37597002 -6.993983981 24.34699539 1.068933735 0.947767084 0.194691928 0.107989353 197.0447808 797434.4651 0.036490551 0.041250041 1.01E-07 6.993983981 -0.121166652 TIMQVSS(ph)GSRGSSGEAT(ph)R ddPTM_K562_Paclitaxel_30min_R1 3 TIMQVSSGSRGSSGEATR 18 1 K7EJ87 K7EJ87 POLR2E 2 T(0.023)IMQVS(0.416)S(0.512)GS(0.049)RGSS(0.043)GEAT(0.957)R;T(0.063)IMQVS(0.416)S(0.516)GS(0.005)RGSS(0.004)GEAT(0.996)R;T(0.01)IMQVS(0.42)S(0.523)GS(0.048)RGSS(0.002)GEAT(0.998)R 98.957 0.0034216 175919000 0 63.067 64.413 0 115.66 0 0 0 0 119.34 TRUE FALSE 0 69.95286834 48.1511415 0 131.4148501 0 0 0 0 95.01844249 0 0.736203062 0.506755744 0 1.383045719 0 0 0 0 1 6.570135654 TIQEVLEEQS(ph)EDEDREAK ddPTM_K562_Paclitaxel_30min_R1 6 TIQEVLEEQSEDEDREAK 18 1 M0R0Q7;P18858-2;P18858-3;P18858 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 1 TIQEVLEEQS(1)EDEDREAK;TIQEVLEEQS(1)EDEDREAK;TIQEVLEEQS(1)EDEDREAK;TIQEVLEEQS(1)EDEDREAK;TIQEVLEEQS(1)EDEDREAK;TIQEVLEEQS(1)EDEDREAK 117.35 0.00014051 348066000 3710.21 2979.44 5497.73 3764.84 2965.81 2922.09 2587.83 3704 4312.8 4888.47 TRUE FALSE 3762.164387 3304.745335 4109.760066 3523.380013 3369.803534 3440.281633 3078.857233 3389.32208 4727.06371 3892.197131 0.966591429 0.849069362 1.055897204 0.905241922 0.865784394 0.88389193 0.791033221 0.870799183 1.214497507 1 11.92636907 -8.747339771 24.99988755 1.107248767 0.897194774 0.504207728 0.082775835 161.6043895 286542.5194 0.056385576 0.021082659 1.79E-09 8.747339771 -0.210053993 TIQNSSVS(ph)PTSSSSSSSSTGETQTQSSSR ddPTM_K562_Paclitaxel_30min_R1 1 TIQNSSVSPTSSSSSSSSTGETQTQSSSR 29 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 TIQNS(0.003)S(0.008)VS(0.787)PT(0.188)S(0.011)S(0.003)SSSSSSTGETQTQSSSR 154.83 3.90E-35 18444000 1810.9 1475.7 2073.2 1830 1659.4 1308.1 1522.9 1700.2 1287.7 1887.2 TRUE FALSE 1836.258187 1636.821916 1549.795019 1712.631991 1885.438374 1540.073168 1811.862325 1555.757398 1411.389339 1502.587604 1.22206398 1.089335432 1.031417413 1.139788446 1.254794309 1.02494734 1.20582808 1.035385487 0.939305858 1 10.55323339 -8.489034413 5.471624695 0.973557136 1.13227105 0.469220274 0.073494768 0.162025269 13.63169821 0.043962511 0.019148971 3.24E-09 8.489034413 0.158713915 TIQNSSVSPT(ph)SSSSSSSSTGETQTQSSSR ddPTM_K562_Paclitaxel_30min_R1 2 TIQNSSVSPTSSSSSSSSTGETQTQSSSR 29 0 Q7Z417 Q7Z417 NUFIP2 Nuclear fragile X mental retardation-interacting protein 2 1 TIQNSS(0.002)VS(0.177)PT(0.765)S(0.016)S(0.025)S(0.009)S(0.004)S(0.001)S(0.001)SSTGETQTQSSSR;TIQNS(0.004)S(0.012)VS(0.288)PT(0.462)S(0.103)S(0.103)S(0.02)S(0.005)S(0.001)SSSTGETQTQSSSR 125.95 8.05E-15 20545700 1731.98 1762.87 2527.3 2755.8 2061.34 1904.26 1920.73 2417.9 2141.43 2600.5 TRUE FALSE 1756.233064 1955.346108 1889.251858 2579.055323 2342.129407 2241.953774 2285.178491 2212.484303 2347.12392 2070.516673 0.848210056 0.94437593 0.912454308 1.245609541 1.131181138 1.082799189 1.103675484 1.068566282 1.133593344 1 11.0157751 -6.187650432 10.02326439 1.111715244 0.905384153 0.699568924 0.062338418 0.307500607 40.46626348 0.01664327 0.028865097 6.49E-07 6.187650432 -0.206331091 TIQT(ph)AFRQY(ph)RMNK ddPTM_K562_Paclitaxel_30min_R1 1 TIQTAFRQYRMNK 13 2 A0A1W2PR28;Q5JU85-3;A0A1W2PR18;Q5JU85 A0A1W2PR28 IQSEC2 IQ motif and SEC7 domain-containing protein 2 2 T(0.004)IQT(0.997)AFRQY(1)RMNK 48.602 0.03122 0 271.71 243.75 554.7 252.08 301.92 272.51 215.1 232.71 180.33 424.35 TRUE FALSE 275.5147783 270.3634493 414.6591246 235.9127171 343.0466155 320.8358223 255.9141021 212.939833 197.6515022 337.8672371 0.815452782 0.800206175 1.227284208 0.69824088 1.015329626 0.949591399 0.757439829 0.63024706 0.584997539 1 8.400312649 -7.865738431 4.605724781 0.704080083 0.920599312 0.194635136 0.169286932 0.296900592 10.70905653 0.070796726 0.047113401 1.36E-08 7.865738431 0.216519229 TISGPLIPPAS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 TISGPLIPPASPR 13 0 A0A0A0MSG0;A6NGB9 A0A0A0MSG0 WIPF3 WAS/WASL-interacting protein family member 3 1 TISGPLIPPAS(1)PR;TISGPLIPPAS(1)PR;TISGPLIPPAS(1)PR 135.91 0.00014947 103744000 5109.9 5027.8 5519.61 5234.94 4312.17 4402.61 3939.61 5160.92 3481.48 5678.3 TRUE FALSE 5181.454365 5576.752207 4126.11619 4899.194379 4899.56056 5183.351068 4687.130431 4722.467633 3815.89171 4521.059343 1.146070859 1.233505642 0.91264367 1.083638592 1.083719586 1.146490385 1.036732782 1.044548915 0.844026017 1 12.14244514 -8.592466169 5.210902384 0.923027495 1.088764043 0.377202367 0.085865107 0.218170395 10.97147429 0.061898736 0.022288395 2.56E-09 8.592466169 0.165736548 TISINS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 TISINSPK 8 0 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 TISINS(1)PK;T(0.001)IS(0.002)INS(0.998)PK 107.11 0.011474 78396000 9791.5 8739 17091.5 12019.4 9337.4 8344 6435.6 10743.1 9535.7 14258.3 TRUE FALSE 9928.611209 9693.153573 12776.53944 11248.52948 10609.31196 9823.691244 7656.721504 9830.406599 10451.64659 11352.45063 0.874578673 0.853837985 1.125443294 0.990845928 0.934539361 0.865336619 0.674455389 0.865928152 0.920651138 1 13.47071614 -7.219730108 3.703209005 0.844018149 0.964101793 0.149827327 0.10333177 0.383491582 11.11613459 0.03779514 0.036480317 6.03E-08 7.219730108 0.120083644 TIVEELLADSEFRR ddPTM_K562_Paclitaxel_30min_R1 1 TIVEELLADSEFRR 14 1 Q5QJE6 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 0 106.58 0.0060652 2420200 1190.3 1125.9 1221.2 1371.4 1080.7 1095.2 1170.2 1085.3 1179.4 1545.2 FALSE TRUE 1206.967872 1248.82957 912.8929564 1283.444542 1227.909636 1289.418343 1392.239341 993.0969908 1292.68664 1230.287392 0.98104547 1.01507142 0.742016022 1.0432071 0.998067317 1.048062714 1.131637494 0.807207322 1.050719245 1 10.26477965 TIVLVPS(ph)PLGQQQDMIFEAR ddPTM_K562_Paclitaxel_30min_R1 2 TIVLVPSPLGQQQDMIFEAR 20 0 F5GZT2;Q96R06 F5GZT2 SPAG5 Sperm-associated antigen 5 1 TIVLVPS(1)PLGQQQDMIFEAR;TIVLVPS(1)PLGQQQDMIFEAR 171.25 4.03E-14 137454000 9675.2 10186.1 10377 9463.6 8268.7 8471.9 9439.8 11567.9 10634.1 12590.8 TRUE FALSE 9810.682651 11298.25285 7757.198009 8856.647054 9395.03693 9974.272514 11230.95277 10585.13469 11655.55282 10024.78805 0.978642401 1.127031593 0.773801697 0.883474744 0.937180605 0.994960937 1.120318227 1.055896109 1.162673242 1 13.29128411 -7.570844657 3.634103387 1.089019654 0.939273817 0.357706085 0.091115719 0.270259909 7.442679162 0.038059106 0.029479193 2.69E-08 7.570844657 -0.149745837 TKEVYELLDS(ph)PGKVLLQSK ddPTM_K562_Paclitaxel_30min_R1 1 TKEVYELLDSPGKVLLQSK 19 2 E9PBS1;P22234;P22234-2 E9PBS1 PAICS Multifunctional protein ADE2;Phosphoribosylaminoimidazole-succinocarboxamide synthase;Phosphoribosylaminoimidazole carboxylase 1 T(0.001)KEVYELLDS(0.941)PGKVLLQS(0.058)K 62.94 0.015529 9461000 1287.1 783.26 3320.5 1427.5 1049.8 550.86 637.69 1699.9 1329.4 2390.6 TRUE FALSE 1305.123371 868.7789756 2482.198708 1335.946539 1192.800533 648.5472865 758.6883485 1555.482885 1457.09481 1903.394408 0.685682046 0.456436654 1.304090575 0.701875835 0.626670189 0.340731949 0.39859755 0.817215223 0.765524373 1 10.89435882 -11.48347665 7.71576139 1.000033656 0.674590917 0.123640534 0.257540232 0.000157547 1.05E-05 0.26348503 0.063897921 3.28E-12 11.48347665 -0.325442739 TKEYVSNDAAQS(ph)DDEEKLQSQPTDTDGGR ddPTM_K562_Paclitaxel_30min_R1 2 TKEYVSNDAAQSDDEEKLQSQPTDTDGGR 29 2 Q5JSH3-4;Q5JSH3-2;Q5JSH3;H7BY83 Q5JSH3-4 WDR44 WD repeat-containing protein 44 1 TKEYVSNDAAQS(0.995)DDEEKLQS(0.005)QPTDTDGGR;T(0.015)KEY(0.002)VS(0.002)NDAAQS(0.683)DDEEKLQS(0.258)QPT(0.034)DT(0.006)DGGR 72.848 7.62E-05 52785000 2631.63 2002.01 6727.7 3057.8 1822.22 1688.55 1411.48 2759 2442.83 4218.3 TRUE FALSE 2668.480939 2220.596222 5029.208928 2861.686394 2070.437214 1987.990634 1679.300962 2524.605729 2677.474736 3358.608145 0.79451988 0.661165616 1.497408662 0.852045333 0.616456915 0.591909073 0.499999074 0.751682131 0.797197714 1 11.71364777 -6.527128889 19.80424844 0.685627523 0.989158026 0.208950475 0.238211787 12.95775133 60372.62238 0.071434002 0.093016661 2.97E-07 6.527128889 0.303530503 TKFAS(ph)DDEHDEHDENGATGPVKR ddPTM_K562_Paclitaxel_30min_R1 1 TKFASDDEHDEHDENGATGPVKR 23 2 P05455 P05455 SSB Lupus La protein 1 T(0.455)KFAS(0.543)DDEHDEHDENGAT(0.002)GPVKR 75.044 0.0066826 20434000 2055.3 1530.2 4564.5 1916.1 1616.1 1131.4 949.95 1908.6 2377.7 2695.4 TRUE FALSE 2084.080541 1697.272411 3412.135522 1793.209922 1836.240181 1332.037904 1130.198053 1746.452517 2606.088709 2146.076 0.971112179 0.790872462 1.589941606 0.83557615 0.855626819 0.620685336 0.526634683 0.813788755 1.214350614 1 11.06748545 -6.48406606 24.99726333 0.80661657 1.10601411 0.189901227 0.258989679 859.3576641 553468.0032 0.074823222 0.110955989 3.28E-07 6.48406606 0.299397539 TKFICVTPTTCSNTIDLPMS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 TKFICVTPTTCSNTIDLPMSPR 22 1 G8JLH9;P40763-2;P40763 G8JLH9 STAT3 Signal transducer and activator of transcription;Signal transducer and activator of transcription 3 1 TKFICVTPTTCSNT(0.005)IDLPMS(0.995)PR;TKFICVTPTTCSNTIDLPMS(1)PR 103.42 0.00013846 41150000 3100.7 2577.8 4243.8 3071.8 1966.84 2468.76 2435.56 3822.6 4108.5 4737.4 TRUE FALSE 3144.119366 2859.252922 3172.400203 2874.788497 2234.756907 2906.559923 2897.694796 3497.84627 4503.139782 3771.91528 0.833560442 0.758037419 0.841058181 0.762156168 0.59247272 0.770579323 0.768229024 0.927339564 1.193860267 1 11.88108156 -8.473469886 3.130214751 1.095046537 0.757949551 0.746871473 0.078312473 0.125435138 2.392786483 0.057197372 0.0215668 3.36E-09 8.473469886 -0.337096986 TKPPRPDS(ph)PATTPNISVK ddPTM_K562_Paclitaxel_30min_R1 1 TKPPRPDSPATTPNISVK 18 2 A0A0U1RRL5;P32519-2;P32519 A0A0U1RRL5 ELF1 ETS-related transcription factor Elf-1 1 TKPPRPDS(0.981)PAT(0.017)T(0.002)PNISVK 100.35 0.0065427 33271000 1872.5 1077 3655.8 1852.3 1527.9 958.35 806.48 1922.3 1385.5 1966.5 TRUE FALSE 1898.720777 1194.590502 2732.848076 1733.501769 1736.025848 1128.299917 959.5053699 1758.988616 1518.583466 1565.726221 1.212677384 0.762962571 1.74541886 1.107155099 1.108767181 0.720624016 0.612818101 1.123433071 0.969890806 1 10.61261625 -7.043723538 3.926023354 0.876473877 1.206971618 0.256092492 0.26036268 0.331742653 10.74070975 0.089263099 0.093305837 9.04E-08 7.043723538 0.33049774 TKS(ph)PPASSAASADQHSQSGSSSDNTER ddPTM_K562_Paclitaxel_30min_R1 1 TKSPPASSAASADQHSQSGSSSDNTER 27 1 Q8IY57-3;Q8IY57;Q8IY57-5 Q8IY57-3 YAF2 YY1-associated factor 2 1 T(0.075)KS(0.701)PPAS(0.075)S(0.075)AAS(0.075)ADQHSQSGSSSDNTER 66.019 0.00069789 5204700 1126.3 797.11 2019.8 1168.3 915.34 964.06 726.49 1176.7 794.97 1580.4 TRUE FALSE 1142.071675 884.1411655 1509.876509 1093.370467 1040.024805 1135.022505 864.337685 1076.73199 871.3304205 1258.313612 0.907620853 0.702639753 1.199920667 0.8689173 0.826522732 0.902018776 0.686901641 0.855694462 0.692458869 1 10.29727582 -6.51812679 24.60582665 0.819583805 0.933501768 0.105833769 0.141212281 365.1108595 1890565.519 0.040539427 0.053817795 3.03E-07 6.51812679 0.113917963 TKSPPAS(ph)SAASADQHSQSGSSSDNTER ddPTM_K562_Paclitaxel_30min_R1 1 TKSPPASSAASADQHSQSGSSSDNTER 27 1 Q8IY57-3;Q8IY57;Q8IY57-5 Q8IY57-3 YAF2 YY1-associated factor 2 1 T(0.01)KS(0.027)PPAS(0.366)S(0.366)AAS(0.23)ADQHS(0.001)QSGSSSDNTER 64.035 0.0010118 4154300 1066.9 825.56 2088.3 1457.7 1003.4 1087.8 674.35 1306 795.79 1700.6 TRUE FALSE 1081.839892 915.6974327 1561.082837 1364.209646 1140.080068 1280.706057 802.3043922 1195.047148 872.2291852 1354.016787 0.798985583 0.676282186 1.15292724 1.007527868 0.841998474 0.945856853 0.592536518 0.882594042 0.644179004 1 10.40302991 TKSPPASSAASADQHSQS(ph)GSSSDNTER ddPTM_K562_Paclitaxel_30min_R1 1 TKSPPASSAASADQHSQSGSSSDNTER 27 1 Q8IY57-3;Q8IY57;Q8IY57-5 Q8IY57-3 YAF2 YY1-associated factor 2 1 TKSPPASSAASADQHS(0.057)QS(0.891)GS(0.038)S(0.012)S(0.003)DNTER 127.44 6.82E-15 5448900 1189.2 935.64 2219.4 1305.9 957.18 811 674.27 1118.3 1350.6 1338.1 TRUE FALSE 1205.852469 1037.796339 1659.085021 1222.145419 1087.564121 954.819463 802.2092126 1023.293435 1480.331165 1065.394486 1.131836597 0.974095843 1.557249492 1.147129477 1.020808852 0.896212132 0.75296918 0.960483134 1.389467643 1 10.057172 -6.725912666 3.980470855 0.981302635 1.217471374 0.18904709 0.202723089 0.353908626 11.98005363 0.065178707 0.082255228 1.88E-07 6.725912666 0.23616874 TKSPPASSAASADQHSQSGS(ph)SSDNTER ddPTM_K562_Paclitaxel_30min_R1 2 TKSPPASSAASADQHSQSGSSSDNTER 27 1 Q8IY57-3;Q8IY57;Q8IY57-5 Q8IY57-3 YAF2 YY1-associated factor 2 1 TKSPPASSAASADQHSQS(0.056)GS(0.581)S(0.179)S(0.179)DNT(0.004)ER;TKSPPASSAASADQHS(0.011)QS(0.181)GS(0.505)S(0.137)S(0.137)DNT(0.029)ER 91.603 1.86E-06 7829700 1964.16 1741.47 3384.3 2501.2 1561.36 1541.46 1616.42 2191.3 1977.07 2602 TRUE FALSE 1991.6643 1931.609584 2529.891609 2340.784227 1774.043666 1814.816288 1923.127257 2005.135387 2166.976407 2071.710972 0.961362047 0.932374067 1.221160501 1.129879727 0.85631813 0.875998782 0.928279708 0.967864444 1.045983941 1 11.01660703 -6.756633549 24.99998773 0.939773898 1.063418823 0.274939677 0.091514439 171.3584634 891402.6495 0.029875302 0.037327213 1.75E-07 6.756633549 0.123644925 TKSVSSMS(ph)EFESLLDCSPYLAGGDAR ddPTM_K562_Paclitaxel_30min_R1 1 TKSVSSMSEFESLLDCSPYLAGGDAR 26 1 O94964-2;X6R3R3;H0YDM2;O94964-3;O94964-4;O94964 O94964-2 SOGA1 Protein SOGA1;N-terminal form;C-terminal 80 kDa form 1 T(0.103)KS(0.088)VS(0.088)S(0.103)MS(0.59)EFES(0.023)LLDCS(0.003)PY(0.001)LAGGDAR 53.865 0.010977 10363000 1184.8 1116.9 1479.8 1394 781.39 1037.3 641.52 1240 1475.8 1857.1 TRUE FALSE 1201.390855 1238.846919 1106.206188 1304.595079 887.828547 1221.250591 763.245071 1134.65426 1617.557184 1478.622001 0.812507088 0.837838825 0.748133186 0.882304659 0.600443214 0.825938333 0.516186741 0.76737277 1.093962611 1 10.53003757 -8.740075734 9.733103161 1.047058081 0.745916356 0.54918446 0.108026787 0.185348995 81.7042691 0.075781791 0.027381538 1.82E-09 8.740075734 -0.301141726 TLAPQMCS(ph)S(ph)FATGPR ddPTM_K562_Paclitaxel_30min_R1 1 TLAPQMCSSFATGPR 15 0 Q9UFN0 Q9UFN0 NIPSNAP3A Protein NipSnap homolog 3A 2 T(0.001)LAPQMCS(0.999)S(0.999)FAT(0.001)GPR 58.723 0.028523 0 732.17 713.38 1079.9 910.58 799.43 620.88 496.82 795.74 676.21 900.77 TRUE FALSE 742.4226389 791.2692409 807.265889 852.1794744 908.3259005 730.9843504 591.0890014 728.1369201 741.1629919 717.1925796 1.035178919 1.103286988 1.125591524 1.188215688 1.266502089 1.01923022 0.824170548 1.015259975 1.03342256 1 9.486216751 -7.509206678 24.85857612 0.96265857 1.14295762 0.543054422 0.076909611 479.1269149 871152.3192 0.029338996 0.024793887 3.10E-08 7.509206678 0.18029905 TLDFDPLLS(ph)PASPK ddPTM_K562_Paclitaxel_30min_R1 1 TLDFDPLLSPASPK 14 0 Q53H80 Q53H80 AKIRIN2 Akirin-2 1 TLDFDPLLS(0.517)PAS(0.483)PK 171.76 4.32E-06 19820000 5378.9 4821.6 9489.9 6089.4 4560 4251.2 4223.5 5426.8 5426 7191.3 TRUE FALSE 5454.221195 5348.038594 7094.057375 5698.853139 5181.149201 5005.09063 5024.887077 4965.759467 5947.191544 5725.709113 0.952584403 0.93403952 1.238983196 0.995309581 0.904892145 0.874143365 0.877600831 0.867274144 1.038682096 1 12.48323866 -6.613652819 5.115540611 0.916200269 1.043921056 0.2316239 0.093055629 0.278899973 12.11572403 0.028444892 0.037080251 2.43E-07 6.613652819 0.127720787 TLDFDPLLSPAS(ph)PKR ddPTM_K562_Paclitaxel_30min_R1 2 TLDFDPLLSPASPKR 15 1 Q53H80 Q53H80 AKIRIN2 Akirin-2 1 TLDFDPLLS(0.044)PAS(0.956)PKR;TLDFDPLLS(0.011)PAS(0.989)PKR 122.29 0.00021385 31808000 5972.7 5482.4 10345.6 6344.1 5161.7 4573.2 4502.3 6885.2 5684.4 8425.7 TRUE FALSE 6056.336227 6080.986972 7733.725327 5937.217821 5864.810928 5384.192809 5356.587921 6300.259284 6230.412019 6708.537715 0.90278038 0.906454913 1.152818342 0.88502414 0.874230895 0.80258814 0.798473251 0.939140473 0.928728776 1 12.71178262 -5.545706107 24.9943209 0.91672467 0.903698102 0.002636293 0.096510933 3258.02139 3567287.969 0.026720278 0.070702293 2.85E-06 5.545706107 -0.013026568 TLEEVVMAEEEDEGT(ph)DR ddPTM_K562_Paclitaxel_30min_R1 3 TLEEVVMAEEEDEGTDR 17 0 F8WC89;A6NKF1 F8WC89 SAC3D1 SAC3 domain-containing protein 1 1 TLEEVVMAEEEDEGT(1)DR;TLEEVVMAEEEDEGT(1)DR;TLEEVVMAEEEDEGT(1)DR 82.925 0.010045 102137000 8059.2 8295.5 9404 9555.8 9042.3 8755.6 7813.9 9231.1 8507.1 9170.5 TRUE FALSE 8172.053665 9201.230744 7029.843893 8942.933758 10274.01435 10308.28273 9296.546734 8446.860436 9324.244966 7301.547066 1.119222213 1.260175503 0.962788273 1.224799851 1.407101023 1.411794327 1.273229721 1.156859 1.277023195 1 12.83398646 -5.250666927 22.58486692 1.2299339 1.119221971 0.038630503 0.141092373 1497.955234 3140274.484 0.036795697 0.477735347 5.61E-06 5.250666927 -0.110711929 TLEEVVMAEEEDEGTDRPGS(ph)PA ddPTM_K562_Paclitaxel_30min_R1 4 TLEEVVMAEEEDEGTDRPGSPA 22 1 F8WC89;A6NKF1 F8WC89 SAC3D1 SAC3 domain-containing protein 1 1 TLEEVVMAEEEDEGT(0.001)DRPGS(0.999)PA;TLEEVVMAEEEDEGTDRPGS(1)PA;TLEEVVMAEEEDEGTDRPGS(1)PA;TLEEVVMAEEEDEGTDRPGS(1)PA 222.25 1.12E-44 46740000 13004.4 11567.7 17274.6 14267.1 12067.8 11902.6 12075.7 13918.1 12642.8 16641.6 TRUE FALSE 13186.50172 12830.70061 12913.41358 13352.07206 13711.63867 14013.35899 14367.00104 12735.67053 13857.19743 13250.03279 0.995205215 0.968352367 0.97459484 1.007701059 1.034838094 1.057609382 1.084299282 0.961180303 1.045823633 1 13.69370831 -6.497567365 3.045900799 1.032569799 0.978507535 0.341879745 0.031727133 0.292306919 5.485843819 0.009844359 0.014500896 3.18E-07 6.497567365 -0.054062264 TLEPVKPPTVPNDYMT(ph)SPAR ddPTM_K562_Paclitaxel_30min_R1 1 TLEPVKPPTVPNDYMTSPAR 20 1 B6VEX4;A0A0A0MRT6;Q8IZP0-11;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0 B6VEX4 ABI1 Abl interactor 1 1 TLEPVKPPT(0.002)VPNDY(0.019)MT(0.489)S(0.489)PAR 94.456 0.0050838 35023000 1630.5 1462 2538.7 1950.9 1513.8 1579.4 1280.1 1806.9 1288.3 2201 TRUE FALSE 1653.332031 1621.626104 1897.773787 1825.778006 1720.005189 1859.484414 1522.992292 1653.392567 1412.046971 1752.434992 0.943448424 0.925355926 1.082935342 1.04185206 0.981494433 1.061086102 0.869072062 0.943482968 0.805762826 1 10.77514521 -7.769377284 24.999953 0.8998697 1.006370666 0.364069733 0.065566068 195.4426982 615528.2866 0.026973684 0.018556287 1.70E-08 7.769377284 0.106500966 TLEPVKPPTVPNDYMTS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 1 TLEPVKPPTVPNDYMTSPAR 20 1 B6VEX4;A0A0A0MRT6;Q8IZP0-11;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0 B6VEX4 ABI1 Abl interactor 1 1 TLEPVKPPT(0.001)VPNDYMT(0.248)S(0.751)PAR 101.16 0.00044922 31538000 1638.5 1473.1 2704.4 1806.1 1554.1 1848.4 1596.8 1894.7 1829.3 2784 TRUE FALSE 1661.444055 1633.93804 2021.640772 1690.26483 1765.794731 2176.187787 1899.784464 1733.733409 2005.012439 2216.619272 0.74953966 0.737130666 0.912037894 0.762541791 0.796616159 0.981759842 0.857063948 0.782152096 0.90453623 1 11.11414528 -7.126265289 0.031509845 1.672543797 1.95E-10 0.443833919 0.0686103 276.0439753 3.145822168 75.38877744 91.0090205 7.48E-08 7.126265289 -1.672543797 TLEVVS(ph)PSQSVTGSAGHTPYYQSPTDEK ddPTM_K562_Paclitaxel_30min_R1 1 TLEVVSPSQSVTGSAGHTPYYQSPTDEK 28 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 TLEVVS(0.376)PS(0.376)QS(0.037)VT(0.106)GS(0.106)AGHTPYYQSPTDEK 123.04 1.55E-14 11769000 664.61 765.56 962.24 636.03 575.02 509.52 571.8 717.97 421.37 928.33 TRUE FALSE 673.9165905 849.1464298 719.3106112 595.2378826 653.3474592 599.876218 680.296065 656.9739671 461.8444712 739.1358364 0.911762842 1.148836774 0.973177832 0.805315956 0.88393422 0.811591305 0.920393832 0.888840636 0.624843836 1 9.529695713 -6.091656939 4.710150898 0.847065354 1.0372507 0.338523549 0.106231672 0.221267906 8.227745317 0.02768986 0.050428588 8.10E-07 6.091656939 0.190185346 TLEVVSPSQS(ph)VTGSAGHTPYYQSPTDEK ddPTM_K562_Paclitaxel_30min_R1 1 TLEVVSPSQSVTGSAGHTPYYQSPTDEK 28 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 T(0.001)LEVVS(0.104)PS(0.255)QS(0.299)VT(0.117)GS(0.222)AGHT(0.001)PYYQSPTDEK 79.177 3.51E-05 19696000 686.39 831.39 1393.9 1148.6 650.31 520.59 634.4 957.93 594.26 1129.5 TRUE FALSE 696.0015777 922.1639718 1041.992705 1074.933937 738.8932318 612.9093271 754.7740882 876.5478673 651.3413282 899.30728 0.773930772 1.025415887 1.158661482 1.195291043 0.821624875 0.681534933 0.839283863 0.974692285 0.72427005 1 9.812670337 -6.788471225 24.95652513 0.830986353 1.045998215 0.326724316 0.13875277 245.6747872 226812.2395 0.044593937 0.050577717 1.63E-07 6.788471225 0.215011862 TLEVVSPSQSVTGS(ph)AGHTPYYQSPTDEK ddPTM_K562_Paclitaxel_30min_R1 1 TLEVVSPSQSVTGSAGHTPYYQSPTDEK 28 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 TLEVVS(0.045)PS(0.216)QS(0.216)VT(0.042)GS(0.348)AGHT(0.096)PY(0.016)Y(0.02)QS(0.001)PTDEK 79.395 3.19E-05 14690000 1055.6 1026.4 1771.9 1339.8 1022.8 883.2 903.48 1421.9 739.06 1737.7 TRUE FALSE 1070.381657 1138.465823 1324.56193 1253.871225 1162.122676 1039.823119 1074.910614 1301.10072 810.0500152 1383.555786 0.773645463 0.822855019 0.957360696 0.906267197 0.839953609 0.751558506 0.776918881 0.940403512 0.585484173 1 10.4341651 -7.00378768 23.74407003 0.803996094 0.869176362 0.046219365 0.113436712 246.916473 1547892.423 0.03424321 0.037940608 9.91E-08 7.00378768 0.065180268 TLFAS(ph)PLAK ddPTM_K562_Paclitaxel_30min_R1 1 TLFASPLAK 9 0 Q96HA1 Q96HA1 POM121 Nuclear envelope pore membrane protein POM 121 1 TLFAS(1)PLAK 92.866 0.015138 8826700 2211.7 2486.5 4258.6 2495.1 2160.7 2259.1 1874.9 2703.4 2418.1 3532.6 TRUE FALSE 2242.670624 2757.984479 3183.46376 2335.075454 2455.023921 2659.719666 2230.652487 2473.729296 2650.369309 2812.654181 0.797350289 0.980562949 1.131836179 0.830203539 0.872849545 0.945626264 0.793077408 0.87949998 0.942301875 1 11.45771647 TLGT(ph)PTQPGSTPR ddPTM_K562_Paclitaxel_30min_R1 1 TLGTPTQPGSTPR 13 0 Q8NFH5-2;Q8NFH5;Q8NFH5-3 Q8NFH5-2 NUP35 Nucleoporin NUP53 1 T(0.004)LGT(0.996)PTQPGSTPR 219.97 2.80E-17 71589000 3035.2 2718.8 3557.5 3434.9 2661.7 2737.7 2580.6 3215.1 2641.6 3324.8 TRUE FALSE 3077.702164 3015.647778 2659.365126 3214.600888 3024.268603 3223.192656 3070.255378 2941.957187 2895.337483 2647.203935 1.162623749 1.139182266 1.004593976 1.21433821 1.142438844 1.217583811 1.159810673 1.111345125 1.093734202 1 11.37025363 -9.076895712 1.540063236 1.001113105 1.146570115 0.394220391 0.055566913 0.526161491 2.730414978 0.05474263 0.016012851 8.38E-10 9.076895712 0.14545701 TLHCEGTEINS(ph)DDEQESK ddPTM_K562_Paclitaxel_30min_R1 1 TLHCEGTEINSDDEQESK 18 0 Q9BPX3;H0Y9Z8 Q9BPX3 NCAPG Condensin complex subunit 3 1 TLHCEGTEINS(1)DDEQESK 110.34 0.0011236 0 678.46 636.53 1285.9 1018.5 787.69 695.59 579.29 978.05 639.29 932.88 TRUE FALSE 687.9605332 706.028498 961.2586412 953.1779686 894.9867137 818.9431199 689.2072534 894.9585477 700.6966609 742.7585439 0.926223655 0.950549144 1.294173792 1.283294519 1.204949739 1.102569774 0.927902155 1.204911818 0.943370718 1 9.536749485 -7.533473611 24.60820981 1.033138399 1.140655487 0.132505529 0.134129084 432.5087399 1004555.923 0.055288123 0.042870046 2.93E-08 7.533473611 0.107517088 TLHCEGTEINS(ph)DDEQESKEVEETATAK ddPTM_K562_Paclitaxel_30min_R1 3 TLHCEGTEINSDDEQESKEVEETATAK 27 1 Q9BPX3;H0Y9Z8 Q9BPX3 NCAPG Condensin complex subunit 3 1 TLHCEGT(0.235)EINS(0.764)DDEQES(0.001)KEVEETATAK;TLHCEGTEINS(1)DDEQESKEVEETATAK;TLHCEGTEINS(1)DDEQESKEVEETATAK 117.02 3.96E-12 159293000 2074.46 1215.83 5162.4 2279.88 1878.67 1530.98 739.34 2492.9 1855.99 3061.31 TRUE FALSE 2103.50884 1348.578431 3859.088272 2133.658701 2134.57666 1802.477807 879.6259054 2281.112585 2034.266132 2437.413342 0.863008668 0.553282616 1.58327199 0.875378281 0.875754893 0.739504366 0.360884997 0.935874333 0.834600393 1 11.25113521 -6.930509822 2.719258838 0.748333383 0.983375548 0.089421806 0.287428499 0.635422443 9.539343419 0.099796683 0.1134053 1.17E-07 6.930509822 0.235042165 TLHS(ph)PPLQLQQR ddPTM_K562_Paclitaxel_30min_R1 1 TLHSPPLQLQQR 12 0 A0A2R8YGT1;F8W9A8;B7WPL9;Q6PFW1-7;Q6PFW1-4;Q6PFW1-3;Q6PFW1-2;Q6PFW1 A0A2R8YGT1 PPIP5K1 Inositol hexakisphosphate and diphosphoinositol-pentakisphosphate kinase 1 1 T(0.013)LHS(0.987)PPLQLQQR 82.578 0.02068 18962000 1542.2 1179.1 1753.4 1327.3 1308.8 1179.9 1318 1548.3 1189.6 1547.2 TRUE FALSE 1563.795558 1307.838125 1310.732484 1242.172919 1487.080718 1389.138698 1568.08362 1416.762251 1303.866395 1231.879791 1.269438439 1.061660509 1.064010055 1.008355627 1.207163823 1.127657673 1.272919348 1.150081576 1.058436387 1 10.26664577 -8.941529958 3.660949505 1.001306346 1.140599235 0.250732851 0.082768617 0.306546443 8.439194856 0.083049738 0.021989656 1.14E-09 8.941529958 0.139292889 TLLEQLDDDQ ddPTM_K562_Paclitaxel_30min_R1 1 TLLEQLDDDQ 10 0 O75400-3;O75400;O75400-2 O75400-3 PRPF40A Pre-mRNA-processing factor 40 homolog A 0 151.44 3.20E-27 0 2611.8 2405.2 2909.5 2888.4 2458 2754.5 2352.1 2911.5 2469 3357.9 FALSE TRUE 2648.373258 2667.80787 2174.960741 2703.150952 2792.821214 3242.9719 2798.398696 2664.149902 2706.158482 2673.558137 0.990580015 0.997849208 0.813507928 1.011068701 1.044608373 1.212979757 1.046694537 0.996481006 1.012193617 1 11.38454533 -6.509831533 16.57941044 1.056851875 0.935685905 0.334475666 0.074367483 8.715906003 11073.93028 0.022601211 0.031690374 3.09E-07 6.509831533 -0.12116597 TLLISSLS(ph)PALPAEHLEDR ddPTM_K562_Paclitaxel_30min_R1 1 TLLISSLSPALPAEHLEDR 19 0 Q8NDT2 Q8NDT2 RBM15B Putative RNA-binding protein 15B 1 TLLIS(0.049)S(0.423)LS(0.528)PALPAEHLEDR 83.727 0.0034942 5787500 993.3 1077.5 1133.6 1008.3 1010.4 1327.7 1044.8 1052.1 974.8 1404.6 TRUE FALSE 1007.209265 1195.145094 847.4086598 943.632151 1148.033586 1563.148953 1243.045346 962.717538 1068.433896 1118.341749 0.900627438 1.068676096 0.757736766 0.843777988 1.026549878 1.397738173 1.111507593 0.86084378 0.955373343 1 10.12714541 -6.896422371 6.052318619 1.075170768 0.897067889 0.22921762 0.149452232 0.346773273 17.58523444 0.051416877 0.058553335 1.27E-07 6.896422371 -0.178102879 TLLSES(ph)SSQSSKSPSLSSK ddPTM_K562_Paclitaxel_30min_R1 1 TLLSESSSQSSKSPSLSSK 19 1 Q9UPU5 Q9UPU5 USP24 Ubiquitin carboxyl-terminal hydrolase 24 1 T(0.065)LLS(0.306)ES(0.309)S(0.259)S(0.02)QS(0.008)S(0.008)KS(0.003)PS(0.019)LS(0.001)SK 61.524 0.025368 57728000 1313.7 1130.5 4205.8 1955.8 1327.7 1142.1 1001.7 1647.7 1674.9 2769.3 TRUE FALSE 1332.095853 1253.931813 3143.993773 1830.363742 1508.555218 1344.635399 1191.767346 1507.7176 1835.781629 2204.91514 0.604148354 0.568698446 1.425902393 0.830128883 0.684178357 0.609835442 0.540504859 0.683798471 0.832586069 1 11.10650742 TLMLPLTEGS(ph)LR ddPTM_K562_Paclitaxel_30min_R1 3 TLMLPLTEGSLR 12 0 Q7L4E1-3;Q7L4E1 Q7L4E1-3 FAM73B Protein FAM73B 1 TLMLPLT(0.009)EGS(0.991)LR;TLMLPLTEGS(1)LR;TLMLPLTEGS(1)LR 152 0.00012319 45939400 5411.5 5196.39 4653.8 4795.9 4836.03 4487.3 6161.1 7040.2 5592.8 9355 TRUE FALSE 5487.277696 5763.749433 3478.890633 4488.31244 5494.779161 5283.05965 7330.136562 6442.091066 6130.013429 7448.445865 0.736701024 0.773819067 0.467062619 0.60258375 0.737708142 0.709283486 0.984116243 0.864890634 0.822992278 1 12.86272372 -7.640490847 4.997557381 0.90584527 0.661530896 0.621159822 0.094596961 0.157577283 6.236847628 0.039530004 0.030160411 2.29E-08 7.640490847 -0.244314374 TLNAETPKSS(ph)PLPAK ddPTM_K562_Paclitaxel_30min_R1 1 TLNAETPKSSPLPAK 15 1 Q7L2J0 Q7L2J0 MEPCE 7SK snRNA methylphosphate capping enzyme 1 TLNAETPKS(0.1)S(0.899)PLPAK 152.07 0.00010787 17094000 2161.4 1356.3 4888.7 2700.6 1466.4 1701.7 1239.2 2007.3 2091.6 2900.3 TRUE FALSE 2191.666268 1504.385421 3654.487222 2527.395603 1666.148506 2003.472602 1474.331731 1836.767336 2292.507526 2309.217268 0.949094872 0.651469847 1.582565345 1.09448151 0.721520893 0.867598138 0.638455182 0.795406894 0.992763893 1 11.1731882 -6.750652811 24.92532288 0.817434762 1.076205061 0.186262943 0.236980366 341.7470935 789696.4455 0.072474922 0.092613129 1.78E-07 6.750652811 0.258770299 TLNMTTS(ph)PEEK ddPTM_K562_Paclitaxel_30min_R1 2 TLNMTTSPEEK 11 0 P49915-2;P49915 P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] 1 TLNMT(0.108)T(0.198)S(0.694)PEEK;T(0.01)LNMT(0.069)T(0.22)S(0.701)PEEK 169.58 0.00019367 344360000 10731.8 8764.4 19311.4 12500.4 8935.1 7966.7 7950.9 11799.1 8144.7 13413.9 TRUE FALSE 10882.07831 9721.326831 14435.99823 11698.68029 10152.21189 9379.482387 9459.541769 10796.69281 8927.034826 10680.13982 1.018907851 0.910224679 1.351667532 1.09536771 0.950569194 0.878217191 0.885713289 1.010913058 0.835853742 1 13.38264291 -6.800221604 4.795476798 0.92072367 1.100070693 0.34023476 0.114349765 0.23194425 12.14456244 0.036823246 0.043411903 1.58E-07 6.800221604 0.179347022 TLPANRSS(ph)PSGASS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 TLPANRSSPSGASSPR 16 1 A0A499FJI4;O75592-2;O75592 A0A499FJI4 MYCBP2 E3 ubiquitin-protein ligase MYCBP2 2 TLPANRS(0.167)S(0.778)PS(0.055)GAS(0.311)S(0.689)PR;T(0.001)LPANRS(0.414)S(0.58)PS(0.19)GAS(0.235)S(0.58)PR 140.75 1.90E-07 7524500 3666.1 3198.2 4316.1 3696.5 3192.4 3308.8 2978 3449 3384.5 4629.7 TRUE FALSE 3717.436711 3547.390292 3226.447174 3459.423035 3627.258928 3895.569222 3543.059954 3155.985922 3709.596347 3686.164599 1.008483645 0.962352656 0.875285704 0.938488486 0.984019794 1.056808267 0.961177902 0.856170645 1.006356675 1 11.84790478 -5.278258579 5.580989317 0.955898317 1.009844323 0.057701018 0.056796379 0.411636379 48.0118018 0.014881811 0.079938871 5.27E-06 5.278258579 0.053946005 TLPGAS(ph)S(ph)S(ph)LVVK ddPTM_K562_Paclitaxel_30min_R1 2 TLPGASSSLVVK 12 0 H0Y623;Q5SZQ8-4;Q5SZQ8-3;Q5SZQ8-2;Q5SZQ8 H0Y623 CELF3 CUGBP Elav-like family member 3 3 TLPGAS(1)S(1)S(1)LVVK;TLPGAS(1)S(1)S(1)LVVK 95.018 0.013214 6502000 6206.7 5224.8 9896.8 7226.9 5564 4405.9 4562.4 6603.9 6038.5 7995.3 TRUE FALSE 6293.612949 5795.261333 7398.230438 6763.39898 6321.910999 5187.224503 5428.091583 6042.857475 6618.524906 6365.853471 0.988651872 0.91036675 1.162174164 1.06244968 0.993097159 0.814851383 0.852688741 0.949261164 1.039691682 1 12.63613823 -7.011472892 24.11156763 0.921076513 1.031188465 0.233447864 0.084613995 505.9977786 1063413.674 0.028917972 0.030608839 9.74E-08 7.011472892 0.110111952 TLPMS(ph)PPSER ddPTM_K562_Paclitaxel_30min_R1 2 TLPMSPPSER 10 0 O15062 O15062 ZBTB5 Zinc finger and BTB domain-containing protein 5 1 T(0.002)LPMS(0.792)PPS(0.206)ER;T(0.001)LPMS(0.987)PPS(0.012)ER 112.94 0.0046065 30748000 3965.7 3849.1 4872.6 4171.3 3487.8 3996.7 3479.6 4150.5 3932.3 4744.5 TRUE FALSE 4021.232035 4269.357755 3642.451866 3903.771488 3962.897409 4705.458629 4139.835935 3797.889118 4310.014985 3777.568296 1.064502802 1.130186782 0.964231903 1.03340858 1.049060427 1.24563165 1.095899693 1.00537934 1.140949587 1 11.88324212 TLPS(ph)PIDAK ddPTM_K562_Paclitaxel_30min_R1 1 TLPSPIDAK 9 0 H0YLX2;A0A669KBM4;Q2KHR2-2;Q2KHR2 H0YLX2 RFX7 DNA-binding protein RFX7 1 T(0.025)LPS(0.975)PIDAK 93.561 0.014714 7235900 3810.4 3290.5 5553.1 3928.8 2730.1 3206.9 2540.7 4009.7 3155.9 4434.5 TRUE FALSE 3863.757356 3649.767918 4151.151225 3676.824353 3101.985841 3775.598688 3022.784562 3669.050957 3459.038296 3530.746466 1.094317418 1.033709997 1.175714899 1.041373089 0.878563746 1.069348571 0.856131866 1.039171459 0.979690366 1 11.78575751 -6.527116928 24.97287422 0.97060484 1.096835417 0.424529439 0.068692856 107.9135804 635860.2521 0.019002061 0.024634655 2.97E-07 6.527116928 0.126230577 TLQPPES(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 TLQPPESPR 9 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 TLQPPES(1)PR;TLQPPES(1)PR;TLQPPES(1)PR 126.71 0.0013487 285012000 7842.8 7348.6 8969.8 7949.5 7008.2 6687.8 6810.1 8039.2 6627 8608.7 TRUE FALSE 7952.623397 8150.944999 6705.263053 7439.654651 7962.83549 7873.787429 8102.280924 7356.219781 7263.55296 6854.242215 1.160248376 1.189182516 0.978264678 1.085408776 1.16173827 1.148746598 1.182082668 1.073236041 1.059716411 1 12.74278146 -8.820678072 1.951385836 1.005702917 1.12557535 0.322823279 0.059187064 0.406572292 3.127172251 0.059760891 0.01721998 1.51E-09 8.820678072 0.119872433 TLQTDSIDSFETQRT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 TLQTDSIDSFETQRTPR 17 1 P06400;A0A3B3IS71 P06400 RB1 Retinoblastoma-associated protein 1 TLQTDSIDSFET(0.007)QRT(0.993)PR;TLQTDSIDSFETQRT(1)PR;TLQTDSIDSFET(0.001)QRT(0.999)PR;TLQTDSIDSFETQRT(1)PR 185.86 6.96E-10 686221000 11049.1 10769.9 13571 11940.1 9828.3 10289.4 13357.1 14935.7 8317.8 16201.8 TRUE FALSE 11203.82149 11945.7941 10144.83321 11174.31543 11167.08085 12114.08062 15891.54 13666.81906 9116.761855 12899.86427 0.868522432 0.926040294 0.786429454 0.866235117 0.865674291 0.939085898 1.231915287 1.059454485 0.706733161 1 13.65506827 -7.523803618 24.99948555 1.016054594 0.866108475 0.208815432 0.124243104 48.76750619 1318102.156 0.048266338 0.037716008 2.99E-08 7.523803618 -0.149946119 TLRS(ph)HMELT(ph)AHFR ddPTM_K562_Paclitaxel_30min_R1 1 TLRSHMELTAHFR 13 1 Q9Y4E5;Q9Y4E5-2;E9PH99 Q9Y4E5 ZNF451 Zinc finger protein 451 2 T(0.001)LRS(0.999)HMELT(1)AHFR 138.55 0.00024833 274210000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 TLS(ph)PEFNER ddPTM_K562_Paclitaxel_30min_R1 3 TLSPEFNER 9 0 Q9BSJ8;Q9BSJ8-2 Q9BSJ8 ESYT1 Extended synaptotagmin-1 1 T(0.127)LS(0.873)PEFNER;T(0.001)LS(0.999)PEFNER;T(0.142)LS(0.858)PEFNER 172.21 2.04E-05 205389000 7612.3 7907.2 10924.1 9139.5 8821.6 7505.9 8417.7 9410.3 6332.8 10663.9 TRUE FALSE 7718.895686 8770.534836 8166.175847 8553.333377 10023.25127 8836.965977 10014.91463 8610.836278 6941.093736 8490.591326 0.909111673 1.032971026 0.96179118 1.007389597 1.180512745 1.040795115 1.179530877 1.014162141 0.817504161 1 13.05164932 -4.079651225 0.932093928 1.041077234 3.80E-08 0.101681737 0.098853444 36.76674034 4.542334816 0.033699722 64.06471158 8.32E-05 4.079651225 -1.041077196 TLS(ph)SSSMDLSRR ddPTM_K562_Paclitaxel_30min_R1 1 TLSSSSMDLSRR 12 1 Q9H0B6;Q9H0B6-2 Q9H0B6 KLC2 Kinesin light chain 2 1 T(0.079)LS(0.871)S(0.04)S(0.002)S(0.008)MDLSRR 97.203 0.0067616 25009000 1937.6 1325.2 1754.7 1636.5 1479.2 1239.7 1311.4 1639 1552.7 1392.7 TRUE FALSE 1964.732378 1469.889818 1311.704283 1531.542215 1680.692083 1459.543389 1560.231304 1499.75672 1701.843773 1108.866976 1.77183776 1.325578135 1.182923031 1.381177588 1.515684135 1.316247504 1.407050024 1.352512747 1.534759182 1 10.11487059 -11.19336664 4.279652866 0.999871476 1.407190691 0.406904056 0.151626405 112380111.2 42.434764 159215.3641 0.03628477 6.41E-12 11.19336664 0.407319214 TLSDFNSLIS(ph)SPHLGR ddPTM_K562_Paclitaxel_30min_R1 1 TLSDFNSLISSPHLGR 16 0 Q9NRJ4 Q9NRJ4 TULP4 Tubby-related protein 4 1 TLSDFNSLIS(0.646)S(0.354)PHLGR 137.13 7.87E-08 4888700 1488.4 1487.7 1756.6 1504.9 1325.1 1647.6 1396.9 1350.5 1104 1620 TRUE FALSE 1509.242192 1650.132117 1313.124605 1408.38245 1505.601054 1939.778727 1661.954483 1235.766595 1210.044133 1289.843111 1.170097494 1.279327775 1.018049865 1.091902138 1.167274564 1.503887341 1.288493514 0.958075122 0.938132803 1 10.33297988 -8.271435836 24.27229548 0.96107792 1.216059221 0.464378632 0.123798307 481.9744804 1170267.454 0.074202918 0.036352584 5.35E-09 8.271435836 0.254981301 TLSDVEDQKELAS(ph)PVSPELR ddPTM_K562_Paclitaxel_30min_R1 1 TLSDVEDQKELASPVSPELR 20 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 TLSDVEDQKELAS(0.683)PVS(0.317)PELR 62.589 0.018482 43906000 381.27 311.97 638.58 382.08 386.83 315.26 152.55 434.3 354.98 527.78 TRUE FALSE 386.6089563 346.0319396 477.3625811 357.5750989 439.5227951 371.1669345 181.4955661 397.4035042 389.0774151 420.2181463 0.920019661 0.82345787 1.135987547 0.850927315 1.045939589 0.883272029 0.431907969 0.945707623 0.925893892 1 8.714994653 -7.526276424 24.99911307 0.797958338 0.953429041 0.107840076 0.168348498 199.7206095 1469455.066 0.063733408 0.049616966 2.98E-08 7.526276424 0.155470703 TLSDVEDQKELASPVS(ph)PELR ddPTM_K562_Paclitaxel_30min_R1 2 TLSDVEDQKELASPVSPELR 20 1 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;Q5T4S7-5 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 TLSDVEDQKELAS(0.103)PVS(0.897)PELR;TLSDVEDQKELAS(0.084)PVS(0.916)PELR 65.881 0.013606 458850000 2616.9 2343.5 4507.5 2792.6 2253.8 2062.3 1798.96 2833 2362 3706.9 TRUE FALSE 2653.544674 2599.371255 3369.525877 2613.495135 2560.805717 2428.019949 2140.303269 2592.318967 2588.880654 2951.431745 0.899070317 0.880715354 1.141658072 0.885500788 0.867648632 0.822658343 0.725174577 0.878325908 0.877160943 1 11.52719926 -6.507145414 24.52605994 0.849646044 0.972683789 0.226528537 0.091192618 745.5215095 1162163.884 0.02616062 0.037473873 3.11E-07 6.507145414 0.123037745 TLSEVDY(ph)APAGPAR ddPTM_K562_Paclitaxel_30min_R1 4 TLSEVDYAPAGPAR 14 0 O15357;A0A0A0MTP6;O15357-2;H0YFZ4 O15357 INPPL1 "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2" 1 TLSEVDY(1)APAGPAR;TLSEVDY(1)APAGPAR;TLSEVDY(1)APAGPAR;TLSEVDY(1)APAGPAR 308.21 1.43E-195 435722000 3746 3726.1 4596.55 3780.67 3262.05 3091.94 3488.12 4112.52 4462.02 5238.08 TRUE FALSE 3798.455557 4132.928199 3436.094103 3538.194748 3706.396437 3640.252146 4149.972561 3763.135756 4890.616958 4170.556421 0.910779084 0.990977649 0.823893446 0.848374747 0.888705502 0.872845678 0.995064481 0.902310238 1.17265335 1 12.02602416 -8.743961715 24.98874265 1.086326636 0.903957096 0.5612394 0.064441528 148.2077685 211902.3226 0.043726528 0.01644404 1.80E-09 8.743961715 -0.18236954 TLSEYARPHVMS(ph)PTNR ddPTM_K562_Paclitaxel_30min_R1 1 TLSEYARPHVMSPTNR 16 1 Q9P2R6;B1AKN3;Q9P2R6-2 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 TLS(0.001)EY(0.001)ARPHVMS(0.885)PT(0.114)NR 63.639 0.031168 10619000 2105.4 2468.2 2345.2 1961.3 1860.8 1762.1 2204.4 2769.2 2257.4 2622.6 TRUE FALSE 2134.882096 2737.686423 1753.125255 1835.510996 2114.272464 2074.583694 2622.673392 2533.939175 2474.233356 2088.11268 1.022397937 1.311081748 0.839574067 0.87902871 1.012527956 0.99352095 1.256001851 1.213506914 1.184913716 1 11.02798385 -7.749144538 24.99284111 1.181397864 1.009845726 0.239218094 0.132963995 312.506107 635260.541 0.053237339 0.04093439 1.78E-08 7.749144538 -0.171552138 TLSNAEDYLDDEDS(ph)D ddPTM_K562_Paclitaxel_30min_R1 4 TLSNAEDYLDDEDSD 15 0 Q92882 Q92882 OSTF1 Osteoclast-stimulating factor 1 1 TLSNAEDYLDDEDS(1)D;TLSNAEDYLDDEDS(1)D;TLSNAEDYLDDEDS(1)D;TLSNAEDYLDDEDS(1)D 363.37 0 148082000 8748.6 7977.7 10649.3 10418.6 8279.7 8059.9 8393.7 9215.2 8613.9 10441.8 TRUE FALSE 8871.107392 8848.732265 7960.752506 9750.397628 9407.535316 9489.210098 9986.360757 8432.311241 9441.303583 8313.755428 1.067039735 1.064348397 0.957539896 1.172803039 1.131562673 1.141386727 1.201185294 1.0142602 1.135624408 1 13.02128459 -6.27074798 24.99725317 1.119952578 1.033113246 0.250552908 0.066052425 860.707173 2311338.168 0.018176751 0.027406003 5.36E-07 6.27074798 -0.086839332 TLSS(ph)PSNRPSGETSVPPPPAAPPFLPVGR ddPTM_K562_Paclitaxel_30min_R1 2 TLSSPSNRPSGETSVPPPPAAPPFLPVGR 29 1 H3BUF6 H3BUF6 ATXN2L 1 T(0.017)LS(0.215)S(0.738)PS(0.017)NRPS(0.005)GET(0.004)S(0.004)VPPPPAAPPFLPVGR;T(0.018)LS(0.08)S(0.376)PS(0.068)NRPS(0.153)GET(0.153)S(0.153)VPPPPAAPPFLPVGR 91.416 1.03E-06 38652000 374.4 414.95 721.35 641.61 561.8 530.83 620.32 579.86 649.31 546.07 TRUE FALSE 379.6427551 460.2556443 539.236271 600.4600063 638.3266714 624.9652473 738.0224817 530.5972736 711.6791267 434.7806343 0.873182302 1.058592789 1.240249055 1.381064286 1.468158011 1.437426596 1.697459416 1.220379271 1.636869425 1 8.764143872 -5.71861818 1.282386177 1.437854234 0.824290402 0.475759812 0.186788298 0.533505585 1.318739608 0.054436838 0.35185274 1.91E-06 5.71861818 -0.613563832 TLSS(ph)PSNRPSGETSVPPPPAVGR ddPTM_K562_Paclitaxel_30min_R1 2 TLSSPSNRPSGETSVPPPPAVGR 23 1 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 T(0.058)LS(0.192)S(0.666)PS(0.077)NRPS(0.006)GET(0.001)S(0.001)VPPPPAVGR;T(0.036)LS(0.156)S(0.611)PS(0.192)NRPS(0.005)GET(0.001)S(0.001)VPPPPAVGR 79.36 0.00056078 394057000 1442.05 1033.76 1605.87 1345 924.31 1285.92 918.29 1237.58 1067.87 1590.84 TRUE FALSE 1462.243149 1146.629413 1200.448257 1258.73772 1050.216671 1513.959857 1092.530734 1132.439854 1170.443685 1266.625935 1.154439609 0.905262857 0.947752785 0.993772262 0.829145087 1.195269902 0.862552 0.894060214 0.924064203 1 10.30677481 TLSS(ph)SSMDLSR ddPTM_K562_Paclitaxel_30min_R1 2 TLSSSSMDLSR 11 0 Q9H0B6;Q9H0B6-2 Q9H0B6 KLC2 Kinesin light chain 2 1 TLS(0.057)S(0.398)S(0.398)S(0.146)MDLSR;TLS(0.02)S(0.656)S(0.236)S(0.088)MDLSR 155.99 0.00066611 72489000 2898.8 2761.9 3239.9 2327.2 2573.4 2140.6 2220.98 3132.7 2797.7 3155.7 TRUE FALSE 2939.392144 3063.453582 2421.947174 2177.943808 2923.940648 2520.205354 2642.399361 2866.557581 3066.431585 2512.566608 1.169876307 1.219252685 0.96393352 0.866820327 1.163726621 1.003040217 1.051673358 1.140888195 1.220437928 1 11.29494613 -8.262285953 24.77598257 1.135497302 1.05891317 0.048061458 0.111223165 189.7999418 5554509.697 0.059145455 0.03116609 5.47E-09 8.262285953 -0.076584132 TLSSFFT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 TLSSFFTPR 9 0 M0R0Q7;P18858-2;P18858-3;P18858;B4E135;F5GZ28 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 1 TLSSFFT(1)PR;TLSSFFT(1)PR 121.36 0.0059847 96251000 8109.8 7683.5 9143.4 7973.5 6908.5 7173.5 7756.4 8467.7 5617.1 10118.6 TRUE FALSE 8223.362221 8522.410514 6835.035586 7462.115398 7849.554662 8445.619504 9228.136409 7748.316031 6156.647553 8056.423766 1.020721161 1.057840397 0.848395738 0.926231739 0.974322465 1.048308747 1.145438308 0.961756265 0.764191126 1 12.97592386 -8.53671474 24.69369392 0.875721519 1.000931052 0.213291591 0.091758657 320.5132853 572019.9491 0.064218277 0.024298786 2.91E-09 8.53671474 0.125209533 TLSSPS(ph)NRPSGETSVPPPPAVGR ddPTM_K562_Paclitaxel_30min_R1 1 TLSSPSNRPSGETSVPPPPAVGR 23 1 Q8WWM7-6;Q8WWM7-8;Q8WWM7-5;Q8WWM7-4;Q8WWM7-9;Q8WWM7-2;Q8WWM7;Q8WWM7-3 Q8WWM7-6 ATXN2L Ataxin-2-like protein 1 T(0.004)LS(0.075)S(0.319)PS(0.54)NRPS(0.06)GET(0.002)S(0.001)VPPPPAVGR 99.409 9.92E-05 480320000 780.19 591.7 711.42 654.56 674.82 697.23 493.79 816.85 586.34 775.39 TRUE FALSE 791.1150671 656.303807 531.8132223 612.5794513 766.7419088 820.8739509 587.4840747 747.4534939 642.6605768 617.3650924 1.281437964 1.063072427 0.861424186 0.99224828 1.241958637 1.32964102 0.951599114 1.210715512 1.040973299 1 9.269980101 -5.257730749 23.86502797 1.083202627 1.281438112 0.167006527 0.136412596 399.6973962 2571835.027 0.03602106 0.257685655 5.52E-06 5.257730749 0.198235485 TLSSS(ph)SMDLSR ddPTM_K562_Paclitaxel_30min_R1 2 TLSSSSMDLSR 11 0 Q9H0B6;Q9H0B6-2 Q9H0B6 KLC2 Kinesin light chain 2 1 TLS(0.022)S(0.432)S(0.52)S(0.027)MDLSR;TLSS(0.216)S(0.748)S(0.035)MDLSR 150.09 0.00043446 78102000 4544.1 3724.3 3862.3 3401 3493.2 3402.9 3519.4 4415 3985.1 4634.3 TRUE FALSE 4607.73142 4130.931669 2887.214597 3182.875082 3969.03298 4006.356536 4187.187778 4039.918192 4367.886661 3689.827116 1.248766209 1.11954613 0.782479641 0.862608188 1.075669091 1.08578435 1.134792402 1.094880076 1.183764584 1 11.84933751 -6.981778666 24.88606234 1.104932814 0.992531449 0.112269744 0.12703364 495.3059434 676468.132 0.042836131 0.04856235 1.04E-07 6.981778666 -0.112401365 TLSVAAAFNEDEDS(ph)EPEEMPPEAK ddPTM_K562_Paclitaxel_30min_R1 2 TLSVAAAFNEDEDSEPEEMPPEAK 24 0 Q8WW12 Q8WW12 PCNP PEST proteolytic signal-containing nuclear protein 1 TLSVAAAFNEDEDS(1)EPEEMPPEAK;TLSVAAAFNEDEDS(1)EPEEMPPEAK 114.39 7.17E-08 26028000 5284.6 4554.2 8984.5 5384.7 4595.9 3885.2 3586.6 5523.8 4968.2 6967.5 TRUE FALSE 5358.600704 5051.442957 6716.251856 5039.349443 5221.939389 4574.185669 4267.138627 5054.518712 5445.417809 5547.519675 0.965945327 0.910576844 1.210676527 0.908396858 0.941310657 0.824546092 0.769197565 0.911131282 0.981595042 1 12.43762716 -6.488224393 24.99814636 0.892632869 1.024270547 0.25170228 0.096488885 823.1122931 593757.4627 0.027804709 0.041217456 3.25E-07 6.488224393 0.131637678 TLTDEVNS(ph)PDSDRR ddPTM_K562_Paclitaxel_30min_R1 2 TLTDEVNSPDSDRR 14 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 TLTDEVNS(0.982)PDS(0.018)DRR;T(0.001)LTDEVNS(0.998)PDSDRR 140.89 2.60E-06 378620000 3849 3923.3 4265.4 3793.2 3676.1 3507.2 3060.1 4544.9 3379.7 4546 TRUE FALSE 3902.897875 4351.659162 3188.547016 3549.92113 4176.847057 4129.152676 3640.738 4158.782377 3704.335286 3619.522705 1.078290756 1.20227431 0.880930243 0.98077051 1.153977305 1.140800325 1.005861352 1.148986404 1.023431979 1 11.82158375 -7.845873316 16.29547057 1.057032169 1.069839161 0.013758173 0.094236259 24.7697526 4742.435931 0.041609138 0.028052759 1.43E-08 7.845873316 0.012806992 TLTDEVNSPDS(ph)DRR ddPTM_K562_Paclitaxel_30min_R1 2 TLTDEVNSPDSDRR 14 1 F8VXC8;Q8TAQ2-2;Q8TAQ2-3;Q8TAQ2 F8VXC8 SMARCC2 SWI/SNF complex subunit SMARCC2 1 TLTDEVNS(0.073)PDS(0.927)DRR;TLTDEVNS(0.205)PDS(0.795)DRR 227.74 1.56E-26 317980000 5736.3 5745.2 7729.4 6304.3 5181 5579.3 5447.1 6523.2 4905.8 6808.8 TRUE FALSE 5816.625898 6372.480365 5778.017374 5899.970415 5886.739915 6568.710518 6480.658789 5969.013443 5377.02401 5421.162823 1.072948017 1.175482193 1.065826201 1.088321935 1.085881407 1.211679253 1.195437031 1.101057769 0.991858054 1 12.40438662 -8.701493266 4.421840209 0.99419423 1.128595766 0.52634858 0.049243318 0.166492239 6.280871081 0.041632595 0.013557493 1.99E-09 8.701493266 0.134401536 TLTRT(ph)SQETADVK ddPTM_K562_Paclitaxel_30min_R1 1 TLTRTSQETADVK 13 1 H3BNN5;H3BV11;H3BRI8;H3BM93;H3BVG0;Q8N1F7 H3BNN5 NUP93 Nuclear pore complex protein Nup93 1 T(0.08)LT(0.08)RT(0.574)S(0.264)QET(0.001)ADVK 125.33 0.0040286 15887000 4328.8 3838.4 6885.3 4507.3 3751.7 3320.8 3147.5 5058.6 4699.1 5419.3 TRUE FALSE 4389.416555 4257.489493 5147.020859 4218.221952 4262.745057 3909.697254 3744.721694 4628.840355 5150.469551 4314.843685 1.017282867 0.986707701 1.192863806 0.97760713 0.987925721 0.90610403 0.867869607 1.072771273 1.193663068 1 12.07509258 -8.508939526 24.66752909 1.108960095 0.99289042 0.195508895 0.091153594 839.4300472 1485512.103 0.055682309 0.024974932 3.10E-09 8.508939526 -0.116069675 TLVHS(ph)SSDGHIDPQHAAGK ddPTM_K562_Paclitaxel_30min_R1 2 TLVHSSSDGHIDPQHAAGK 19 0 F6SS63;Q8N5C8-2;Q8N5C8 F6SS63 TAB3 TGF-beta-activated kinase 1 and MAP3K7-binding protein 3 1 T(0.019)LVHS(0.327)S(0.327)S(0.327)DGHIDPQHAAGK;T(0.16)LVHS(0.423)S(0.344)S(0.072)DGHIDPQHAAGK 81.89 0.0038645 51931000 5909 5700.5 9813.5 7201.4 5584.3 5185 4392.4 6786.8 5762.6 8564 TRUE FALSE 5991.744231 6322.899868 7335.960553 6739.534436 6344.976203 6104.486949 5225.83497 6210.218978 6316.123478 6818.652099 0.878728544 0.927294688 1.075866674 0.988396876 0.930532327 0.895263002 0.766402933 0.910769297 0.926300886 1 12.73527086 -7.052835123 3.269833385 0.886388491 0.971799347 0.151398044 0.071698278 0.403176307 8.599467686 0.025565641 0.026778058 8.85E-08 7.052835123 0.085410855 TLVITST(ph)PASPNRELHPQLLSPTK ddPTM_K562_Paclitaxel_30min_R1 1 TLVITSTPASPNRELHPQLLSPTK 24 1 E9PK89;Q8TBN0 E9PK89 RAB3IL1 Guanine nucleotide exchange factor for Rab-3A 1 TLVIT(0.09)S(0.09)T(0.402)PAS(0.402)PNRELHPQLLS(0.014)PT(0.001)K 96.466 0.00035623 56981000 1490.1 1334.5 2516.1 1823.7 1134.9 1591.4 1364.3 1815 1596.7 1880.6 TRUE FALSE 1510.965997 1480.205223 1880.879436 1706.736045 1289.492594 1873.612446 1623.168803 1660.804421 1750.070169 1497.332688 1.009105064 0.98856135 1.256153326 1.139850922 0.86119311 1.251300036 1.084040184 1.109175292 1.168791801 1 10.54817909 TLVITSTPAS(ph)PNR ddPTM_K562_Paclitaxel_30min_R1 2 TLVITSTPASPNR 13 0 E9PK89;Q8TBN0 E9PK89 RAB3IL1 Guanine nucleotide exchange factor for Rab-3A 1 TLVIT(0.023)S(0.015)T(0.015)PAS(0.946)PNR;TLVIT(0.015)S(0.015)T(0.015)PAS(0.956)PNR 93.823 0.013194 59028000 3575.6 3426.4 4528.8 4235 2885.91 3019.3 2919.07 3711.6 2457.1 4052.5 TRUE FALSE 3625.669432 3800.505939 3385.448429 3963.386055 3279.019801 3554.730462 3472.948294 3396.276413 2693.115434 3226.598276 1.123681699 1.177867715 1.049231463 1.22834816 1.016246685 1.101696015 1.076349764 1.052587314 0.834660904 1 11.65579825 -8.585429393 5.045531359 0.918770857 1.108598498 0.55494971 0.068160699 0.14262133 7.150920502 0.046672627 0.016797483 2.60E-09 8.585429393 0.189827642 TLVITSTPAS(ph)PNRELHPQLLS(ph)PTK ddPTM_K562_Paclitaxel_30min_R1 1 TLVITSTPASPNRELHPQLLSPTK 24 1 E9PK89;Q8TBN0 E9PK89 RAB3IL1 Guanine nucleotide exchange factor for Rab-3A 2 T(0.001)LVIT(0.047)S(0.178)T(0.322)PAS(0.486)PNRELHPQLLS(0.81)PT(0.157)K 58.515 0.013159 32115000 3194.6 2469.8 5034.7 3469.6 2327.2 2527.6 2424.1 3572.3 2274.6 3854.5 TRUE FALSE 3239.334256 2739.461116 3763.627717 3247.075385 2644.20404 2975.834371 2884.06032 3268.810817 2493.085493 3068.950784 1.055518476 0.892637683 1.226356492 1.058040879 0.861598711 0.969658551 0.939754503 1.065123245 0.8123576 1 11.58352979 -6.725511894 23.74235185 0.946000732 1.058332733 0.248724426 0.099188625 156.4530687 103389.2313 0.028878935 0.037280655 1.88E-07 6.725511894 0.112332001 TLVLDFETEGERNS(ph)PNPR ddPTM_K562_Paclitaxel_30min_R1 2 TLVLDFETEGERNSPNPR 18 1 Q5VUA4 Q5VUA4 ZNF318 Zinc finger protein 318 1 TLVLDFETEGERNS(1)PNPR;TLVLDFETEGERNS(1)PNPR 83.54 0.0048732 8434400 1128.63 1256.5 1888.65 1562.1 1227.79 1329.61 1104.16 1312.9 1161.16 1760.59 TRUE FALSE 1144.434302 1393.688919 1411.836949 1461.913898 1395.035785 1565.397665 1313.668596 1201.36095 1272.694606 1401.780792 0.816414598 0.994227434 1.007173844 1.042897653 0.995188258 1.116720727 0.937142672 0.857024834 0.907912716 1 10.45304505 -11.08226992 4.661138022 1.000001591 0.969837754 0.0119289 0.084090988 1.48E-06 2.91E-07 0.086565089 0.02099401 8.27E-12 11.08226992 -0.030163837 TMCPLLSMKPGEYSYFS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 TMCPLLSMKPGEYSYFSPR 19 1 Q15003;C9J470;E9PHA2;Q15003-2 Q15003 NCAPH Condensin complex subunit 2 1 TMCPLLSMKPGEYS(0.001)YFS(0.999)PR 107.57 0.00039328 16643000 926.14 947.69 1575.3 978.11 826.26 833.67 962.91 1052.2 1151.1 2007.3 TRUE FALSE 939.1088174 1051.161999 1177.596032 915.3784025 938.8106007 981.5096692 1145.617146 962.8090424 1261.668298 1598.211158 0.587599963 0.657711588 0.736821305 0.572751853 0.587413369 0.614130157 0.716812131 0.602429183 0.789425285 1 10.64224232 -9.040742811 3.098327574 0.999667583 0.637236235 0.821630807 0.053086868 0.106431195 2.555191138 0.052348357 0.013966389 9.10E-10 9.040742811 -0.362431347 TMPPGSHSPS(ph)GAGQGRT(ph)AR ddPTM_K562_Paclitaxel_30min_R1 5 TMPPGSHSPSGAGQGRTAR 19 1 Q96PY0 Q96PY0 PSMG3-AS1 Putative uncharacterized protein PSMG3-AS1 2 TMPPGS(0.001)HS(0.001)PS(0.998)GAGQGRT(1)AR;TMPPGS(0.001)HS(0.002)PS(0.997)GAGQGRT(1)AR;TMPPGS(0.01)HS(0.01)PS(0.98)GAGQGRT(1)AR;TMPPGS(0.003)HS(0.005)PS(0.991)GAGQGRT(1)AR;TMPPGS(0.005)HS(0.006)PS(0.989)GAGQGRT(1)AR 98.573 0.0082332 1450196700 539.53 560.03 683.523 528.56 662.26 467.14 487.53 527.52 478.77 610.039 TRUE FALSE 547.0850846 621.1759693 510.9591649 494.6605273 752.4710242 549.98072 580.0362724 482.7038833 524.7579977 485.7127169 1.126355283 1.278895832 1.051978149 1.018422022 1.549210053 1.132316904 1.194196183 0.993805323 1.080387602 1 8.923959449 -8.253389838 23.10549372 1.027822348 1.195574874 0.231299906 0.140532043 323.3418658 928131.5111 0.068796551 0.038703464 5.58E-09 8.253389838 0.167752526 TNHPEVS(ph)MS(ph)TISEVLGR ddPTM_K562_Paclitaxel_30min_R1 1 TNHPEVSMSTISEVLGR 17 0 E5RH37;E9PBN4;F8W7M8;Q9P243-4;Q9P243-2;Q9P243 E5RH37 ZFAT Zinc finger protein ZFAT 2 T(0.315)NHPEVS(0.974)MS(0.403)T(0.307)IS(0.001)EVLGR 92.8 0.030273 391360000 2559.8 2817.2 3020.4 3152.6 2998.1 2900.3 2554.1 2666.1 2306.8 3059.7 TRUE FALSE 2595.645098 3124.791423 2257.862664 2950.406347 3406.491978 3414.627483 3038.727142 2439.598164 2528.378447 2436.13146 1.065478255 1.282685879 0.926822998 1.211103093 1.39832026 1.401659778 1.24735762 1.001423036 1.037866178 1 11.25037627 -8.263142037 24.81310996 1.014733439 1.223879836 0.330064194 0.134339483 179.5610595 2616710.457 0.075367372 0.039148186 5.46E-09 8.263142037 0.209146397 TNLSGRQS(ph)PSFK ddPTM_K562_Paclitaxel_30min_R1 1 TNLSGRQSPSFK 12 1 Q6IN85-4;Q6IN85-2;Q6IN85 Q6IN85-4 SMEK1 Serine/threonine-protein phosphatase 4 regulatory subunit 3A 1 TNLSGRQS(0.999)PSFK 130.61 0.002291 28689000 2334.1 1692.1 3388.1 2457.9 1493.4 1834.2 1412.8 2288.7 1705.7 2861 TRUE FALSE 2366.784601 1876.8492 2532.732252 2300.261295 1696.826363 2159.469617 1680.871425 2094.260649 1869.540106 2277.92663 1.039008268 0.823928732 1.111858573 1.009804822 0.744899481 0.94799788 0.737895331 0.919371424 0.820720071 1 11.15350556 -6.732294588 24.98646718 0.855895818 0.992113546 0.288960145 0.102906135 261.6541594 224320.7562 0.028797389 0.037171126 1.85E-07 6.732294588 0.136217727 TNNVSEHEDTDKYR ddPTM_K562_Paclitaxel_30min_R1 1 TNNVSEHEDTDKYR 14 1 E9PP73;P53618 E9PP73 COPB1 Coatomer subunit beta 0 124.38 0.00054725 4623800 2522.2 1815.3 3940.3 2686.7 2167.1 1725.9 1767.2 2457.3 1876.7 3355.4 FALSE TRUE 2557.518582 2013.500593 2945.522532 2514.387087 2462.295709 2031.964132 2102.516975 2248.537027 2056.96542 2671.567638 0.957310062 0.753677565 1.102544622 0.941165423 0.921666992 0.760588691 0.786997471 0.841654538 0.769946975 1 11.38347083 -7.145704687 6.367465591 0.819454979 0.936286656 0.20461148 0.10078322 0.361101433 17.71472381 0.03265489 0.032709554 7.15E-08 7.145704687 0.116831677 TNPPTQKPPS(ph)PPMSGR ddPTM_K562_Paclitaxel_30min_R1 1 TNPPTQKPPSPPMSGR 16 1 B6VEX4;A0A0A0MRT6;Q8IZP0-11;Q8IZP0-10;Q8IZP0-8;Q8IZP0-7;Q8IZP0-2;Q8IZP0-4;Q8IZP0-3;Q8IZP0-5;Q8IZP0-6;Q8IZP0-9;Q8IZP0-12;Q8IZP0 B6VEX4 ABI1 Abl interactor 1 1 TNPPT(0.003)QKPPS(0.97)PPMS(0.027)GR 78.418 0.017866 84317000 2149.7 2055.1 4580 2829 1776.2 2001.4 1988.3 2406.2 2391 3591.5 TRUE FALSE 2179.802432 2279.482768 3423.722355 2647.560602 2018.148511 2356.320189 2365.569545 2201.778291 2620.666233 2859.550329 0.762288536 0.797147281 1.197293966 0.925866062 0.705757297 0.824017736 0.827252286 0.769973611 0.916460958 1 11.48157258 -5.543918464 24.99330998 0.884905763 0.771002512 0.113050014 0.128808901 500.1574809 594141.0728 0.035115806 0.092926437 2.86E-06 5.543918464 -0.113903251 TNS(ph)MGSATGPLPGTK ddPTM_K562_Paclitaxel_30min_R1 1 TNSMGSATGPLPGTK 15 0 O15014 O15014 ZNF609 Zinc finger protein 609 1 T(0.014)NS(0.966)MGS(0.021)ATGPLPGTK 95.554 0.0081745 15784000 1846.5 1685.8 3723 2131.3 1454.2 1398.9 1387 2219.5 1463.9 3090.8 TRUE FALSE 1872.356697 1869.861345 2783.082605 1994.607957 1652.28666 1646.975273 1650.176009 2030.939621 1604.514136 2460.893263 0.760844334 0.759830332 1.130923736 0.81052193 0.671417442 0.669259126 0.670559765 0.825285538 0.652004766 1 11.26496637 TNS(ph)SDS(ph)ERSPDLGHSTQIPR ddPTM_K562_Paclitaxel_30min_R1 1 TNSSDSERSPDLGHSTQIPR 20 1 B4DF77;Q6VY07;Q6VY07-2 B4DF77 PACS1 Phosphofurin acidic cluster sorting protein 1 2 T(0.042)NS(0.487)S(0.486)DS(0.849)ERS(0.134)PDLGHS(0.001)T(0.001)QIPR 77.795 0.0056624 39089000 2418.3 1985.5 3299.4 2076.5 1831.6 2098.3 1758.3 2271.6 2522.5 2886.1 TRUE FALSE 2452.163661 2202.283605 2466.425664 1943.322584 2081.094929 2470.404043 2091.928246 2078.613401 2764.797396 2297.911236 1.067127234 0.958384976 1.073333741 0.845690884 0.905646353 1.075065044 0.910360772 0.904566447 1.203178501 1 11.16610735 -8.75089167 24.99984005 1.101589288 0.966300271 0.266004239 0.089062497 239.2936517 567175.1726 0.060143842 0.022205414 1.77E-09 8.75089167 -0.135289017 TNS(ph)TGGSSGSSVGGGSGK ddPTM_K562_Paclitaxel_30min_R1 2 TNSTGGSSGSSVGGGSGK 18 0 K7EKH8;K7EIZ7;X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2 K7EKH8 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 T(0.05)NS(0.59)T(0.36)GGSSGSSVGGGSGK;T(0.014)NS(0.966)T(0.013)GGS(0.003)S(0.003)GS(0.001)SVGGGSGK 193.36 2.21E-100 4488200 1894.19 1581.42 3524.6 2032.15 1562.44 1201.47 1590.52 2222 1702.86 2649.4 TRUE FALSE 1920.714504 1754.084784 2634.771138 1901.816995 1775.27078 1414.533835 1892.312867 2033.227231 1866.427312 2109.450826 0.910528219 0.831536228 1.249031789 0.901569722 0.841579599 0.670569713 0.897064223 0.963865669 0.884792994 1 11.04265174 -6.505869268 24.88422663 0.865830229 0.996285529 0.147322796 0.128856395 1279.139376 1871333.745 0.037854775 0.05464622 3.12E-07 6.505869268 0.1304553 TNTNVNCPIECFMPLDVQADREDS(ph)RE ddPTM_K562_Paclitaxel_30min_R1 2 TNTNVNCPIECFMPLDVQADREDSRE 26 2 P02751;P02751-8;P02751-13;P02751-7;P02751-1;P02751-11;P02751-3;P02751-17;P02751-14;P02751-9;P02751-5;P02751-6;P02751-10;P02751-12;H0Y7Z1 P02751 FN1 Fibronectin;Anastellin;Ugl-Y1;Ugl-Y2;Ugl-Y3 1 TNTNVNCPIECFMPLDVQADREDS(1)RE;TNTNVNCPIECFMPLDVQADREDS(1)RE 88.709 0.00042541 545259000 2125 2208.7 2154.37 2635.7 2324.6 2321.8 1977.05 3091.6 2577.4 2832.9 TRUE FALSE 2154.756556 2449.853335 1610.472649 2466.657999 2641.249876 2733.53863 2352.184917 2828.949283 2824.970786 2255.553425 0.955311691 1.086142899 0.714003327 1.093593249 1.170998588 1.211914823 1.042841588 1.254215152 1.252451285 1 11.13926574 -6.506841334 23.48693199 1.162310396 0.93000939 0.459790067 0.114630671 280.429206 410690.7104 0.031878585 0.045710141 3.11E-07 6.506841334 -0.232301006 TNYNDRYDEIR ddPTM_K562_Paclitaxel_30min_R1 2 TNYNDRYDEIR 11 1 Q5T8U2;P62424 Q5T8U2 RPL7A 60S ribosomal protein L7a 0 ; 119.27 0.024838 49080000 5757.2 5228.8 7630 6335.8 5373.5 5005.8 4938.8 5876.3 4636.5 6435.1 FALSE TRUE 5837.818562 5799.698067 5703.712133 5929.450146 6105.461674 5893.508345 5875.911518 5377.071636 5081.856541 5123.623088 1.139392665 1.13195252 1.113218524 1.157276803 1.191629745 1.150261884 1.146827434 1.049466665 0.99184824 1 12.32294863 -8.413426868 2.653564735 0.997092244 1.148281484 0.91286627 0.019328822 0.087434134 1.158076656 0.016006537 0.00609143 3.86E-09 8.413426868 0.151189239 TNYNDRYDEIRR ddPTM_K562_Paclitaxel_30min_R1 2 TNYNDRYDEIRR 12 2 Q5T8U2;P62424 Q5T8U2 RPL7A 60S ribosomal protein L7a 0 ; 185.08 0.00078916 211102600 5032.8 4891.3 6320.3 5406.6 4755.8 4707.5 4215.9 5394.3 5309.5 6159.5 FALSE TRUE 5103.274728 5425.348675 4724.662097 5059.844875 5403.620476 5542.309028 5015.845017 4936.020545 5819.501198 4904.190519 1.040594713 1.106267926 0.963392853 1.031739052 1.101837389 1.13011699 1.022767161 1.006490373 1.186638483 1 12.25979931 -6.737955679 24.46848568 1.075146289 1.035403148 0.085100281 0.062862194 510.0970096 531484.5313 0.01855723 0.023941793 1.83E-07 6.737955679 -0.039743141 TPAAAAAMNLAS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 6 TPAAAAAMNLASPR 14 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 TPAAAAAMNLAS(1)PR;TPAAAAAMNLAS(1)PR;TPAAAAAMNLAS(1)PR;TPAAAAAMNLAS(1)PR;TPAAAAAMNLAS(1)PR;TPAAAAAMNLAS(1)PR 130.47 7.82E-05 1167498000 3045.68 2996.45 3367.9 3074.9 3212.65 3015.53 3237.46 3778.39 2774.59 3536.66 TRUE FALSE 3088.328917 3323.612544 2517.631991 2877.689677 3650.267321 3550.291905 3851.751134 3457.392186 3041.101767 2815.886751 1.096751819 1.180307604 0.894081408 1.021947944 1.296311835 1.260807774 1.367864362 1.22781649 1.07998014 1 11.4593736 -6.752851333 24.97913765 1.227741524 1.046689634 0.281985837 0.119745876 220.0235843 639955.9088 0.036133189 0.045895486 1.77E-07 6.752851333 -0.18105189 TPAALAALSLTGSGT(ph)PPTAANYPSSSR ddPTM_K562_Paclitaxel_30min_R1 2 TPAALAALSLTGSGTPPTAANYPSSSR 27 0 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 TPAALAALSLTGS(0.082)GT(0.918)PPTAANYPSSSR;TPAALAALSLTGS(0.026)GT(0.974)PPTAANYPSSSR 156.95 1.03E-34 32955000 1550.03 1733.69 2100.7 1876.9 1792.36 1722.33 1530.78 2110.7 1507.54 2476.8 TRUE FALSE 1571.735202 1922.980137 1570.352304 1756.524035 2036.509777 2027.761043 1821.237514 1931.38286 1652.345953 1972.0268 0.797015133 0.975128805 0.796313875 0.890720164 1.032698834 1.028262416 0.923535884 0.979389763 0.83789224 1 10.94546344 -6.574198493 8.998169357 0.966562077 0.863983102 0.34324766 0.070207042 0.370609264 60.61899418 0.020455281 0.026448166 2.67E-07 6.574198493 -0.102578974 TPAAPAS(ph)PAAVPSEGSGGSTTGWR ddPTM_K562_Paclitaxel_30min_R1 4 TPAAPASPAAVPSEGSGGSTTGWR 24 0 P07199 P07199 CENPB Major centromere autoantigen B 1 T(0.119)PAAPAS(0.881)PAAVPSEGSGGSTTGWR;TPAAPAS(0.977)PAAVPS(0.02)EGS(0.002)GGSTTGWR;TPAAPAS(0.689)PAAVPS(0.062)EGS(0.014)GGS(0.138)T(0.048)T(0.048)GWR;TPAAPAS(0.997)PAAVPS(0.001)EGSGGSTTGWR 163.41 1.24E-25 507016000 8341.7 7585.4 9784.6 8526.4 7850.6 7555.9 6833.3 9142.6 8376.8 9555.7 TRUE FALSE 8458.509536 8413.599624 7314.356716 7979.554867 8919.984632 8895.832775 8129.883003 8365.879064 9181.429069 7608.243095 1.111755951 1.105853154 0.961372636 1.048803879 1.172410571 1.169236138 1.068562466 1.099580936 1.206773884 1 12.89334763 -6.736652985 24.91810573 1.12435358 1.053613006 0.169585329 0.067043437 368.9448797 370903.869 0.019894706 0.025673216 1.83E-07 6.736652985 -0.070740574 TPADRGPS(ph)PAPAPAAS(ph)PQPGSR ddPTM_K562_Paclitaxel_30min_R1 4 TPADRGPSPAPAPAASPQPGSR 22 1 Q8IX07 Q8IX07 ZFPM1 Zinc finger protein ZFPM1 2 T(0.005)PADRGPS(0.995)PAPAPAAS(0.881)PQPGS(0.119)R;TPADRGPS(1)PAPAPAAS(0.924)PQPGS(0.076)R;T(0.002)PADRGPS(0.998)PAPAPAAS(0.76)PQPGS(0.24)R;T(0.002)PADRGPS(0.998)PAPAPAAS(0.772)PQPGS(0.228)R 79.163 0.0017467 318784000 7560.9 7468.5 11020.1 8662.9 7755.4 8023.1 7434.18 8218.6 6822.1 9729.6 TRUE FALSE 7666.775927 8283.936087 8237.93946 8107.300368 8811.81678 9445.884135 8844.776846 7520.378631 7477.393187 7746.702179 0.989682545 1.069350014 1.063412439 1.046548606 1.137492649 1.21934262 1.141747371 0.97078453 0.965235659 1 12.91936656 -8.273191788 24.47726723 0.976007549 1.097649041 0.447038851 0.059415028 593.8903587 1236913.359 0.036219597 0.017636592 5.33E-09 8.273191788 0.121641492 TPADRGPS(ph)PAPAPAAS(ph)PQPGSRGPR ddPTM_K562_Paclitaxel_30min_R1 2 TPADRGPSPAPAPAASPQPGSRGPR 25 2 Q8IX07 Q8IX07 ZFPM1 Zinc finger protein ZFPM1 2 T(0.17)PADRGPS(0.83)PAPAPAAS(0.938)PQPGS(0.062)RGPR;T(0.085)PADRGPS(0.915)PAPAPAAS(0.976)PQPGS(0.024)RGPR 83.639 8.75E-05 81091000 2725.35 2692.5 3503.3 3137.6 2427.9 2694.9 2327.7 2818.2 6304.2 3255.3 TRUE FALSE 2763.513308 2986.476255 2618.848587 2936.368379 2758.621085 3172.802677 2769.368924 2578.776319 6909.746578 2591.868073 1.066224526 1.15224856 1.010409679 1.132915834 1.064336998 1.224137413 1.068483752 0.994948912 2.665932981 1 11.33977657 -8.676304839 24.99950011 1.833938778 1.093116361 0.382505425 0.377964556 19.03884344 5587.088924 0.226674824 0.085674941 2.11E-09 8.676304839 -0.740822417 TPADRGPS(ph)PAPAPAASPQPGSRGPR ddPTM_K562_Paclitaxel_30min_R1 1 TPADRGPSPAPAPAASPQPGSRGPR 25 2 Q8IX07 Q8IX07 ZFPM1 Zinc finger protein ZFPM1 1 T(0.172)PADRGPS(0.555)PAPAPAAS(0.172)PQPGS(0.1)RGPR 46.368 0.022701 9564200 438.59 301.48 657.47 531.69 440.03 766 401.8 449.54 1148.1 517.62 TRUE FALSE 444.7316132 334.3966059 491.483567 497.5897832 499.9695358 901.8393448 478.0394525 411.3487711 1258.380135 412.1287599 1.079108416 0.811388669 1.192548579 1.207364862 1.213139156 2.188246569 1.159927428 0.998107415 3.053366465 1 8.686951334 -7.024512639 21.31085215 1.653242884 1.080978939 0.197944088 0.587108804 204.9772794 178203.2057 0.187738222 0.1891553 9.45E-08 7.024512639 -0.572263946 TPADRGPSPAPAPAAS(ph)PQPGSR ddPTM_K562_Paclitaxel_30min_R1 3 TPADRGPSPAPAPAASPQPGSR 22 1 Q8IX07 Q8IX07 ZFPM1 Zinc finger protein ZFPM1 1 TPADRGPSPAPAPAAS(0.822)PQPGS(0.178)R;TPADRGPSPAPAPAAS(0.969)PQPGS(0.031)R;TPADRGPSPAPAPAAS(0.671)PQPGS(0.329)R 90.744 0.00031284 218314000 2712.51 2821.1 4204.01 3238.99 2874.55 2703.2 2479.03 3191.89 2237.58 3514.05 TRUE FALSE 2750.493509 3129.117238 3142.655681 3031.255679 3266.112377 3182.574565 2949.413001 2920.719021 2452.509557 2797.884681 0.983061785 1.11838678 1.123225593 1.083409799 1.167350605 1.137493116 1.054158172 1.043902574 0.876558485 1 11.45012079 -8.459511329 2.437827703 0.941355489 1.102608155 0.533762087 0.056690962 0.221651123 2.463580036 0.043311752 0.015385976 3.47E-09 8.459511329 0.161252666 TPADRGPSPAPAPAAS(ph)PQPGSRGPR ddPTM_K562_Paclitaxel_30min_R1 1 TPADRGPSPAPAPAASPQPGSRGPR 25 2 Q8IX07 Q8IX07 ZFPM1 Zinc finger protein ZFPM1 1 T(0.005)PADRGPS(0.041)PAPAPAAS(0.689)PQPGS(0.265)RGPR 44.541 0.027457 10645000 394.61 463.24 695.61 523.89 480.24 505.25 362.16 534.86 1076.1 504.14 TRUE FALSE 400.1357575 513.8181098 519.9946523 490.2900402 545.6568185 594.8489934 430.8779694 489.4203045 1179.464213 401.3959913 0.996860373 1.280077831 1.295465484 1.221462224 1.359397778 1.481950509 1.073448611 1.219295447 2.938405562 1 8.648882398 TPADRGPSPAPAPAASPQPGS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 TPADRGPSPAPAPAASPQPGSR 22 1 Q8IX07 Q8IX07 ZFPM1 Zinc finger protein ZFPM1 1 TPADRGPSPAPAPAAS(0.4)PQPGS(0.6)R 61.561 0.012064 69710000 1296.3 1171 2341.9 1758.2 1553.4 1624.1 1526 1797.9 1343.9 1919.4 TRUE FALSE 1314.452199 1298.85374 1750.658381 1645.436921 1764.999379 1912.111332 1815.550534 1645.157173 1472.9876 1528.225226 0.860116805 0.849909894 1.145549982 1.076697919 1.154934069 1.251197336 1.18801241 1.076514865 0.963855048 1 10.57764146 -5.758536636 24.99778993 1.118487208 0.855013236 0.603861363 0.081250816 47.66902477 410494.3521 0.022165292 0.053577214 1.74E-06 5.758536636 -0.263473972 TPADTGFAFPDWAYKPES(ph)SPGSR ddPTM_K562_Paclitaxel_30min_R1 1 TPADTGFAFPDWAYKPESSPGSR 23 1 P50548 P50548 ERF ETS domain-containing transcription factor ERF 1 TPADTGFAFPDWAYKPES(0.495)S(0.495)PGS(0.01)R 111.27 1.26E-05 17008000 1155 1115.6 2031.6 1231.4 1105.8 969.04 1228.2 1554.9 917.7 2142 TRUE FALSE 1171.173563 1237.404981 1518.697453 1152.423516 1256.428681 1140.885638 1461.244538 1422.80154 1005.849185 1705.459224 0.686720355 0.725555301 0.890491799 0.67572622 0.736709892 0.668960959 0.856804148 0.834263006 0.589782019 1 10.73594455 -11.43402245 3.105823915 1.004414318 0.746575071 0.428684846 0.089610804 64027868.48 77903494.35 2475784.683 0.021728387 3.68E-12 11.43402245 -0.257839247 TPADTGFAFPDWAYKPESS(ph)PGSR ddPTM_K562_Paclitaxel_30min_R1 1 TPADTGFAFPDWAYKPESSPGSR 23 1 P50548 P50548 ERF ETS domain-containing transcription factor ERF 1 TPADTGFAFPDWAYKPES(0.244)S(0.719)PGS(0.037)R 104.55 4.24E-05 22009000 1002.2 1246.6 1528.1 1009.2 861.69 717.9 993.73 1372.6 782.9 1924 TRUE FALSE 1016.233892 1382.708004 1142.312256 944.474429 979.0667665 845.2094852 1182.28508 1255.989062 858.1010431 1531.887744 0.663386659 0.902617055 0.745689271 0.616542846 0.639124355 0.551743748 0.771783105 0.81989628 0.56015922 1 10.58109487 -13.6603366 19.46489648 0.993445456 0.718340054 0 0.141294488 0 0 0 0.031478798 2.19E-14 13.6603366 -0.275105401 TPAPPEPGS(ph)PAPGEGPSGR ddPTM_K562_Paclitaxel_30min_R1 3 TPAPPEPGSPAPGEGPSGR 19 0 P0C1Z6-2;P0C1Z6 P0C1Z6-2 TFPT TCF3 fusion partner 1 TPAPPEPGS(1)PAPGEGPSGR;T(0.001)PAPPEPGS(0.999)PAPGEGPSGR;T(0.008)PAPPEPGS(0.992)PAPGEGPSGR 183.71 7.92E-16 160202000 3826.72 3572.5 5787 4450.2 3611.03 3893.72 3922.07 4363.66 3358.93 5087.2 TRUE FALSE 3880.305886 3962.557631 4326.000277 4164.78409 4102.913421 4584.216571 4666.262308 3992.939846 3681.570235 4050.425848 0.957999488 0.978306425 1.068035915 1.028233634 1.012958532 1.131786322 1.152042398 0.985807418 0.908934115 1 11.98385788 -2.023915317 22.77803209 1.028596761 0.005129503 0 0.07222741 0 0 0.017736814 0 0.009464217 2.023915317 -1.023467258 TPAPSYPHAASAGTPAS(ph)PPPLHRPEAYPPSSHNGGLGAR ddPTM_K562_Paclitaxel_30min_R1 1 TPAPSYPHAASAGTPASPPPLHRPEAYPPSSHNGGLGAR 39 1 A0A087WWH3;Q9NZM4-2;Q9NZM4 A0A087WWH3 GLTSCR1 Glioma tumor suppressor candidate region gene 1 protein 1 TPAPSYPHAASAGT(0.007)PAS(0.99)PPPLHRPEAY(0.003)PPSSHNGGLGAR 89.285 1.10E-11 18118000 586.38 708.61 752.25 556.14 718.16 582.45 612.95 871.61 637.13 804.3 TRUE FALSE 594.5911291 785.9784362 562.3351838 520.4716696 815.9855505 685.7393295 729.2540627 797.5612901 698.3291833 640.3832185 0.928492677 1.227356391 0.878122923 0.812750326 1.27421445 1.070826514 1.138777597 1.24544377 1.090486389 1 9.322791692 -6.768320881 24.9999797 1.145714682 0.974689016 0.313986913 0.125666838 207.2083188 752770.497 0.039156248 0.045378803 1.70E-07 6.768320881 -0.171025665 TPAS(ph)PHFR ddPTM_K562_Paclitaxel_30min_R1 2 TPASPHFR 8 0 P29590-2 P29590-2 PML Protein PML 1 TPAS(1)PHFR;T(0.054)PAS(0.946)PHFR 93.096 0.011237 65506000 2179.81 2424.1 2496.7 2353.9 1922.16 2193.6 1853.53 2231.58 2503.6 2725.6 TRUE FALSE 2210.334065 2688.771436 1866.377206 2202.93139 2183.990734 2582.60416 2205.227641 2041.99335 2744.081966 2170.121224 1.018530228 1.238995963 0.860033617 1.015119047 1.006391122 1.190073684 1.016177169 0.940958195 1.264483263 1 11.08355992 TPASGLQT(ph)PTSTPAPGSATR ddPTM_K562_Paclitaxel_30min_R1 1 TPASGLQTPTSTPAPGSATR 20 0 Q96DF8 Q96DF8 DGCR14 Protein DGCR14 1 TPAS(0.025)GLQT(0.971)PT(0.002)S(0.001)TPAPGSATR 134.04 2.35E-09 7792200 617.59 525.48 818.49 929.31 694.98 647.37 514.92 622.58 485.13 1002.3 TRUE FALSE 626.2381654 582.8536835 611.8520765 869.708216 789.6480421 762.17198 612.6233819 569.687943 531.7289041 798.0307098 0.784729407 0.73036498 0.76670242 1.08981798 0.989495808 0.955065978 0.767668931 0.713867193 0.666301306 1 9.640300455 -11.06777267 6.392627797 1.000000181 0.835441921 0.132744329 0.130026873 3.78E-07 5.51E-08 0.142051082 0.03445241 8.56E-12 11.06777267 -0.16455826 TPASGLQTPTS(ph)TPAPGSATR ddPTM_K562_Paclitaxel_30min_R1 1 TPASGLQTPTSTPAPGSATR 20 0 Q96DF8 Q96DF8 DGCR14 Protein DGCR14 1 T(0.001)PAS(0.001)GLQT(0.24)PT(0.111)S(0.635)T(0.001)PAPGS(0.004)AT(0.007)R 132.52 1.32E-09 10293000 729.06 633.04 595 504.38 629.06 612.36 534.76 559.27 625.2 689.18 TRUE FALSE 739.2690893 702.157448 444.7848911 472.0313243 714.7486221 720.953448 636.2279184 511.7565226 685.2532535 548.7247377 1.347249429 1.2796169 0.810579259 0.860233359 1.302563149 1.313870869 1.15946644 0.932628853 1.248810572 1 9.099938807 -10.21185143 0.013004974 1.62E-07 2.151693375 0.038977788 0.190749207 11958.10779 42.07071776 3666.184993 3294.939322 6.14E-11 10.21185143 2.151693213 TPASGLQTPTSTPAPGS(ph)ATR ddPTM_K562_Paclitaxel_30min_R1 1 TPASGLQTPTSTPAPGSATR 20 0 Q96DF8 Q96DF8 DGCR14 Protein DGCR14 1 TPASGLQTPTSTPAPGS(0.5)AT(0.5)R 136.53 2.43E-15 0 672.66 551.41 836.56 567.6 649.34 684.87 558.71 644.06 371.54 660.3 TRUE FALSE 682.0793153 611.6148085 625.3600816 531.1966765 737.7911014 806.3220784 664.7223058 589.3430829 407.2280771 525.7304976 1.297393472 1.163361858 1.189506952 1.010397302 1.40336371 1.533717527 1.264378439 1.120998469 0.774594738 1 9.038179618 -8.558838686 4.13649959 0.891084454 1.262021317 0.528841868 0.141523019 0.182285118 6.865572823 0.112656944 0.040463829 2.76E-09 8.558838686 0.370936862 TPAST(ph)PVSGTPQAS(ph)PMIER ddPTM_K562_Paclitaxel_30min_R1 2 TPASTPVSGTPQASPMIER 19 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 2 T(0.006)PAS(0.081)T(0.865)PVS(0.011)GT(0.038)PQAS(1)PMIER;T(0.013)PAS(0.104)T(0.639)PVS(0.107)GT(0.141)PQAS(0.996)PMIER 159.75 1.50E-11 83486000 5572.7 5264.3 6810.9 5772.3 5040.1 4628.1 5670.8 6844.1 4841.9 7397.1 TRUE FALSE 5650.734993 5839.074077 5091.404059 5402.090514 5726.64695 5448.828553 6746.804696 6262.650985 5306.986129 5889.56696 0.959448298 0.991426724 0.864478508 0.917230511 0.972337523 0.925166246 1.145551913 1.063346597 0.901082569 1 12.52394585 TPASTPVSGT(ph)PQAS(ph)PMIER ddPTM_K562_Paclitaxel_30min_R1 1 TPASTPVSGTPQASPMIER 19 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 2 TPASTPVS(0.151)GT(0.854)PQAS(0.995)PMIER 78.552 0.021133 9116400 923.46 628.26 922.04 668.73 601.86 616.17 675.8 872.29 533.68 985.64 TRUE FALSE 936.3912891 696.8555514 689.2595984 625.8406509 683.8435216 725.439098 804.0295221 798.1835198 584.9423485 784.766027 1.193210788 0.887978745 0.878299486 0.797486932 0.871397968 0.924401762 1.024546801 1.017097444 0.74537165 1 9.616118777 -5.259359323 24.34814093 0.904780393 1.193210931 0.497450232 0.086851507 114.0039956 1334335.831 0.022280269 0.141349428 5.50E-06 5.259359323 0.288430538 TPASTPVSGT(ph)PQASPMIER ddPTM_K562_Paclitaxel_30min_R1 3 TPASTPVSGTPQASPMIER 19 0 Q9UHR4 Q9UHR4 BAIAP2L1 Brain-specific angiogenesis inhibitor 1-associated protein 2-like protein 1 1 TPAS(0.004)T(0.002)PVS(0.123)GT(0.871)PQASPMIER;T(0.001)PAST(0.001)PVS(0.018)GT(0.98)PQASPMIER;TPASTPVS(0.254)GT(0.692)PQAS(0.054)PMIER 214.42 1.06E-28 67536000 3371.52 3274.34 4418.77 3870.01 3431 3203.94 3575.04 4186.06 2446.28 4085.97 TRUE FALSE 3418.731682 3631.843514 3303.196863 3621.80488 3898.360287 3772.113773 4253.385177 3830.428074 2681.256124 3253.247071 1.05086752 1.116374943 1.015353827 1.113289216 1.198298255 1.159491945 1.307427651 1.177416898 0.824178449 1 11.66766468 -8.753093334 24.99037728 0.912089206 1.144193239 0.535946998 0.08567704 129.9892972 389232.591 0.064479587 0.023476127 1.77E-09 8.753093334 0.232104033 TPEELDDS(ph)DFETEDFDVR ddPTM_K562_Paclitaxel_30min_R1 5 TPEELDDSDFETEDFDVR 18 0 G3XAM7;P35221-3;P35221;P35221-2 G3XAM7 CTNNA1 Catenin alpha-1 1 TPEELDDS(1)DFETEDFDVR;T(0.002)PEELDDS(0.998)DFETEDFDVR;TPEELDDS(0.999)DFET(0.001)EDFDVR;TPEELDDS(1)DFETEDFDVR;T(0.216)PEELDDS(0.783)DFETEDFDVR 219.85 2.05E-26 834156000 3666.09 3532.9 4624.62 4622.23 3358.11 3567.61 3500.85 4176.36 3821.54 5070.94 TRUE FALSE 3717.426571 3918.63397 3457.077484 4325.780856 3815.541435 4200.275542 4165.118012 3821.55215 4188.615992 4037.479645 0.920729489 0.97056439 0.856246418 1.071406233 0.945030507 1.040321169 1.031613377 0.946519236 1.03743334 1 11.97923927 -6.26191697 24.99999982 1.007518994 0.921318531 0.470024286 0.045798662 39.0176504 2042469.409 0.012055182 0.019207945 5.47E-07 6.26191697 -0.086200463 TPEGRAS(ph)PAPGSGHPEGPGAHLDMNSLDR ddPTM_K562_Paclitaxel_30min_R1 3 TPEGRASPAPGSGHPEGPGAHLDMNSLDR 29 1 O94826 O94826 TOMM70A Mitochondrial import receptor subunit TOM70 1 T(0.469)PEGRAS(0.517)PAPGS(0.014)GHPEGPGAHLDMNSLDR;T(0.193)PEGRAS(0.754)PAPGS(0.053)GHPEGPGAHLDMNSLDR;T(0.092)PEGRAS(0.904)PAPGS(0.004)GHPEGPGAHLDMNSLDR 75.193 5.96E-05 112557000 1889.18 1548.79 2201.16 1956.3 1808.1 1794.77 1489.49 1603.7 2080.71 1739.15 TRUE FALSE 1915.634349 1717.89213 1645.449934 1830.831674 2054.393831 2113.04726 1772.112952 1467.455675 2280.571492 1384.710275 1.383418887 1.24061485 1.188299071 1.322176708 1.483627202 1.525985108 1.279771649 1.059756471 1.646966541 1 10.43536844 -11.21667009 4.600018803 0.999915751 1.338002368 0.288030131 0.163408407 0.000142061 2.42E-05 0.159188199 0.038599219 6.07E-12 11.21667009 0.338086618 TPESQPDT(ph)PPGTPLVSQDEKR ddPTM_K562_Paclitaxel_30min_R1 2 TPESQPDTPPGTPLVSQDEKR 21 1 A0A0D9SEV0;M0R000;M0QYI1;A0A0D9SFD6;M0R3C8;A0A0D9SFL2;M0QYH2;Q96T60-2;Q96T60 A0A0D9SEV0 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase 1 TPES(0.004)QPDT(0.995)PPGTPLVSQDEKR;T(0.002)PES(0.043)QPDT(0.918)PPGT(0.037)PLVSQDEKR 124.25 3.29E-07 86696000 4223.8 3837.8 8814.8 5223.9 4099.8 3522 3358.8 5544.6 3181.1 5816.6 TRUE FALSE 4282.946232 4256.823983 6589.39472 4888.862435 4658.26217 4146.577249 3996.114766 5073.551622 3486.658869 4631.173727 0.924807939 0.919167415 1.422834708 1.055642203 1.005849153 0.89536206 0.862873 1.095521766 0.752867216 1 12.17716216 -6.934604821 3.015915048 0.924959837 1.093337567 0.190218948 0.154201364 0.445686689 8.237761468 0.052766748 0.059684539 1.16E-07 6.934604821 0.16837773 TPETVVPTAPELQISTSTDQPVT(ph)PKPTSR ddPTM_K562_Paclitaxel_30min_R1 1 TPETVVPTAPELQISTSTDQPVTPKPTSR 29 1 Q14676;Q14676-2 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 TPETVVPTAPELQIS(0.005)T(0.007)S(0.007)T(0.021)DQPVT(0.869)PKPT(0.023)S(0.069)R 68.543 0.0028338 15153000 713.23 466.09 928.74 451.06 376.01 357.99 447.51 525.64 605.16 842.13 TRUE FALSE 723.2174205 516.9792824 694.2681005 422.1310305 427.2289279 421.4745001 532.4226863 480.9836011 663.2883219 670.5034437 1.078618503 0.77103151 1.035443005 0.629573247 0.637176337 0.628594087 0.794064059 0.717346951 0.989239247 1 9.389100932 -4.063932064 0.936234062 0.765961191 3.320864158 0.214938203 0.151824196 23.73823238 2.857193991 0.049571568 102.6345459 8.63E-05 4.063932064 2.554902967 TPGHPPPPEIPS(ph)ELGACDFEKPESPR ddPTM_K562_Paclitaxel_30min_R1 1 TPGHPPPPEIPSELGACDFEKPESPR 26 1 A0A669KB10;A0A669KBG8;Q92538-3;Q92538-2;Q92538 A0A669KB10 GBF1 Golgi-specific brefeldin A-resistance guanine nucleotide exchange factor 1 1 TPGHPPPPEIPS(0.948)ELGACDFEKPES(0.052)PR 62.099 0.0024514 11094000 1243 794.56 2096.7 1287.1 1009.7 1155.3 1145.7 1348.6 977.38 1737.5 TRUE FALSE 1260.405835 881.3127478 1567.362153 1204.551167 1147.238234 1360.176234 1363.090594 1234.028012 1071.261716 1383.396546 0.911095115 0.637064441 1.132981109 0.870720091 0.829290949 0.983214999 0.985321669 0.89202768 0.774370674 1 10.43399904 -5.744679816 24.99984106 0.927298511 0.774079933 0.238177526 0.113608223 353.0576866 526639.4012 0.027995527 0.073628436 1.80E-06 5.744679816 -0.153218577 TPGVLLPGAGGAAGFGMTS(ph)PPPPT(ph)SPSR ddPTM_K562_Paclitaxel_30min_R1 1 TPGVLLPGAGGAAGFGMTSPPPPTSPSR 28 0 Q96L91-3;Q96L91-5;Q96L91-2;Q96L91;A0A0A0MR72;A0A0A0MR80;Q96L91-4;Q6ZTU2-4;Q6ZTU2-5;Q6ZTU2-2;Q6ZTU2-6;Q6ZTU2 Q96L91-3 EP400;EP400NL E1A-binding protein p400;EP400 N-terminal-like protein 2 TPGVLLPGAGGAAGFGMT(0.052)S(0.948)PPPPT(0.418)S(0.345)PS(0.237)R 136.87 1.07E-18 6945500 3442.5 3157.7 4165.5 3289.7 3085 2753.8 3147.9 3831.6 3189.3 4212.7 TRUE FALSE 3490.705621 3502.468365 3113.868007 3078.713366 3505.229229 3242.147765 3745.197592 3506.081664 3495.646515 3354.149428 1.040712615 1.044219538 0.928362935 0.917881994 1.045042657 0.966608028 1.116586387 1.0452968 1.042185684 1 11.71173125 -7.737505522 24.99744812 1.054792002 0.989272286 0.25760575 0.050165363 316.3061742 330362.43 0.019983627 0.015471134 1.83E-08 7.737505522 -0.065519716 TPGVLLPGAGGAAGFGMTSPPPPT(ph)SPSR ddPTM_K562_Paclitaxel_30min_R1 1 TPGVLLPGAGGAAGFGMTSPPPPTSPSR 28 0 Q96L91-3;Q96L91-5;Q96L91-2;Q96L91;A0A0A0MR72;A0A0A0MR80;Q96L91-4;Q6ZTU2-4;Q6ZTU2-5;Q6ZTU2-2;Q6ZTU2-6;Q6ZTU2 Q96L91-3 EP400;EP400NL E1A-binding protein p400;EP400 N-terminal-like protein 1 TPGVLLPGAGGAAGFGMTSPPPPT(0.446)S(0.446)PS(0.107)R 114.88 6.95E-12 48871000 1710.9 1699.8 2124.9 2338.7 2233.3 2223.1 1951.7 2185 1761.4 2475.7 TRUE FALSE 1734.857879 1885.389912 1588.442715 2188.70625 2537.51327 2617.335571 2322.024886 1999.370612 1930.59034 1971.150981 0.880124301 0.956491882 0.80584528 1.110369663 1.287325676 1.327820951 1.178004581 1.014316321 0.979422864 1 10.94482257 -6.351317552 5.870012819 1.148030968 0.889333669 0.487138058 0.115329696 0.203848505 10.65944554 0.036199029 0.054209428 4.45E-07 6.351317552 -0.258697299 TPHDILEDINAS(ph)PEMR ddPTM_K562_Paclitaxel_30min_R1 2 TPHDILEDINASPEMR 16 0 Q9Y6Q9-2;Q9Y6Q9-3;Q9Y6Q9-5;Q9Y6Q9;Q9Y6Q9-4 Q9Y6Q9-2 NCOA3 Nuclear receptor coactivator 3 1 TPHDILEDINAS(1)PEMR;TPHDILEDINAS(1)PEMR 184.6 2.36E-10 74434000 2405.33 2071.21 2483.34 2252.41 2082 2310.1 2149.4 2497.6 2157.15 2595.03 TRUE FALSE 2439.012041 2297.351712 1856.390103 2107.950504 2365.603649 2719.7638 2557.237429 2285.41329 2364.353896 2066.161462 1.180455684 1.111893603 0.898472911 1.020225449 1.144926809 1.316336526 1.237675505 1.106115535 1.144321942 1 11.01273728 -6.871230327 5.36045112 1.178028518 1.046595791 0.191614027 0.102826251 0.307105311 13.29905578 0.033788919 0.038658207 1.35E-07 6.871230327 -0.131432727 TPHYGSQT(ph)PLHDGSR ddPTM_K562_Paclitaxel_30min_R1 1 TPHYGSQTPLHDGSR 15 0 O00267-2;O00267 O00267-2 SUPT5H Transcription elongation factor SPT5 1 TPHYGS(0.001)QT(0.998)PLHDGS(0.001)R 141.18 2.84E-06 6753300 916.48 748.39 1073.1 972.22 819.25 928.08 847.59 1124.9 1057.5 1079.4 TRUE FALSE 929.3135476 830.1017511 802.1826331 909.8661607 930.84572 1092.661957 1008.415778 1029.332724 1159.0776 859.4176875 1.081329325 0.965888605 0.933402517 1.058700762 1.083112128 1.271398033 1.173370984 1.197709494 1.348677851 1 9.747215659 -6.933010033 2.249621915 1.208639301 0.995859094 0.478259286 0.092201664 0.238066204 2.446820718 0.030943653 0.035351447 1.17E-07 6.933010033 -0.212780207 TPKDS(ph)PGIPPSAGAHQLFR ddPTM_K562_Paclitaxel_30min_R1 1 TPKDSPGIPPSAGAHQLFR 19 1 E9PGT3;Q15418-3;Q15418-4;Q15418;Q15418-2;Q5SVM6 E9PGT3 RPS6KA1 Ribosomal protein S6 kinase;Ribosomal protein S6 kinase alpha-1 1 T(0.264)PKDS(0.736)PGIPPSAGAHQLFR 71.402 0.0095781 28796000 1401.8 1213.6 2711.7 1852 1143.2 1141.2 1193.5 1843.1 1707.8 2366.8 TRUE FALSE 1421.429525 1346.104952 2027.097797 1733.221009 1298.923195 1343.575797 1419.960395 1686.517151 1871.841821 1884.444861 0.754296161 0.714324404 1.075700244 0.919751512 0.68928692 0.712982282 0.753516552 0.89496763 0.993312067 1 10.87992387 -8.576440262 3.294353558 0.996359681 0.806907916 0.329360562 0.110581785 0.336496851 7.213492321 0.096411443 0.032424045 2.65E-09 8.576440262 -0.189451764 TPLIADVY(ph)YIVGGTSPR ddPTM_K562_Paclitaxel_30min_R1 1 TPLIADVYYIVGGTSPR 17 0 H0Y988;R4GNC0;B4DVL2;Q02083-2;Q02083 H0Y988 NAAA N-acylethanolamine-hydrolyzing acid amidase;N-acylethanolamine-hydrolyzing acid amidase subunit alpha;N-acylethanolamine-hydrolyzing acid amidase subunit beta 1 TPLIADVY(0.5)Y(0.5)IVGGTSPR 90.913 0.010375 23242000 0 0 0 0 0 49.476 0 0 0 0 TRUE FALSE 0 0 0 0 0 58.24987392 0 0 0 0 0 TPLSFTNPLHS(ph)DDS(ph)DSDERNSDGAVTQNK ddPTM_K562_Paclitaxel_30min_R1 1 TPLSFTNPLHSDDSDSDERNSDGAVTQNK 29 1 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 2 TPLSFT(0.005)NPLHS(0.954)DDS(0.798)DS(0.234)DERNS(0.008)DGAVTQNK 69.284 0.00050803 14964000 975.81 896.98 1744.8 1163 1002.6 1076.5 819.98 1055.5 913.99 1344.7 TRUE FALSE 989.4743506 994.9153098 1304.303661 1088.410385 1139.171094 1267.40216 975.5669244 965.8286868 1001.782823 1070.649402 0.924181482 0.929263406 1.218236015 1.016588982 1.064000122 1.18376955 0.911191771 0.902096134 0.93567775 1 10.06427041 -7.806762181 24.99997627 0.929082537 1.056191549 0.286060194 0.09155463 170.9322781 94284.37657 0.039656203 0.026736323 1.56E-08 7.806762181 0.127109012 TPLSFTNPLHSDDS(ph)DSDERNSDGAVTQNK ddPTM_K562_Paclitaxel_30min_R1 1 TPLSFTNPLHSDDSDSDERNSDGAVTQNK 29 1 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 TPLSFTNPLHS(0.013)DDS(0.972)DS(0.013)DERNS(0.002)DGAVTQNK 67.285 0.00043126 8195100 646.18 364.55 737.04 621.43 420.47 406.44 355.43 457.4 250.54 569.12 TRUE FALSE 655.2285136 404.3528018 550.9651364 581.5742612 477.7451326 478.5164273 422.870987 418.541015 274.6054864 453.1330316 1.445995917 0.892348987 1.215901508 1.283451483 1.054315398 1.056017536 0.933215982 0.923660351 0.60601516 1 8.823790851 -7.695402521 1.178203468 0.818185256 1.181190967 0.467236368 0.161929677 0.431975268 1.210157622 0.101033464 0.061208967 2.02E-08 7.695402521 0.363005711 TPLSTGGTLAFVS(ph)PSLAVHK ddPTM_K562_Paclitaxel_30min_R1 2 TPLSTGGTLAFVSPSLAVHK 20 0 Q86YP4-2;Q86YP4;Q86YP4-3 Q86YP4-2 GATAD2A Transcriptional repressor p66-alpha 1 TPLSTGGTLAFVS(1)PSLAVHK;TPLSTGGTLAFVS(0.988)PS(0.012)LAVHK 143.58 3.24E-13 22521900 3283.4 2845.16 4451.7 2676.5 2504.6 2550.12 2092.05 3231.1 2933.4 3850.1 TRUE FALSE 3329.37773 3155.804191 3327.813277 2504.84127 2845.768923 3002.347977 2489.005566 2956.597887 3215.166177 3065.447507 1.086098432 1.029475854 1.085588081 0.817120914 0.92833719 0.979415883 0.811955044 0.964491442 1.048840722 1 11.58188198 -6.232074995 24.93214137 0.930611784 1.063296323 0.411581614 0.071727223 682.2445457 579266.3116 0.019550187 0.033855871 5.86E-07 6.232074995 0.132684539 TPMYGSQT(ph)PLQDGSR ddPTM_K562_Paclitaxel_30min_R1 1 TPMYGSQTPLQDGSR 15 0 O00267-2;O00267 O00267-2 SUPT5H Transcription elongation factor SPT5 1 TPMYGS(0.001)QT(0.998)PLQDGSR 203.92 1.18E-12 22821000 730.69 394.25 570.64 507.18 378.3 500.56 700.63 768.77 706.18 663.66 TRUE FALSE 740.9219144 437.2955483 426.5748744 474.6517449 429.8308647 589.3272878 833.570885 703.45819 774.0117443 528.4057277 1.40218373 0.827575337 0.807286621 0.898271385 0.813448534 1.115293149 1.577520533 1.331284188 1.464805742 1 9.045502295 -7.5453729 6.386306351 1.370025615 0.934626401 0.4288854 0.21284043 0.14236397 20.84178486 0.078765901 0.061972785 2.85E-08 7.5453729 -0.435399214 TPMYGSQTPLQDGS(ph)RTPHYGSQTPLHDGSR ddPTM_K562_Paclitaxel_30min_R1 1 TPMYGSQTPLQDGSRTPHYGSQTPLHDGSR 30 1 O00267-2;O00267 O00267-2 SUPT5H Transcription elongation factor SPT5 1 TPMYGS(0.001)QT(0.004)PLQDGS(0.488)RT(0.488)PHY(0.01)GS(0.003)QT(0.005)PLHDGSR 51.386 0.005105 30177000 831.14 911.9 1295.1 913.87 775.95 774.27 763.04 820.7 955.74 930.37 TRUE FALSE 842.7785243 1011.464326 968.1359874 855.2584685 881.6475269 911.5759132 907.8228567 750.9764124 1047.543097 740.7600833 1.137721299 1.365441185 1.306949455 1.154568784 1.190193082 1.230595349 1.225528855 1.013791684 1.414146255 1 9.532862549 -14.90621157 0.212730209 1.25E-09 1.253249855 0.245919935 0.112157353 196.0120206 2.0297389 84.2427996 0.225121531 1.24E-15 14.90621157 1.253249854 TPMYGSQTPLQDGSRT(ph)PHYGSQTPLHDGSR ddPTM_K562_Paclitaxel_30min_R1 1 TPMYGSQTPLQDGSRTPHYGSQTPLHDGSR 30 1 O00267-2;O00267 O00267-2 SUPT5H Transcription elongation factor SPT5 1 TPMYGS(0.001)QT(0.003)PLQDGS(0.208)RT(0.679)PHY(0.03)GS(0.042)QT(0.037)PLHDGSR 54.732 0.0057411 31761000 678.5 841.18 981.15 722.46 942.09 673.54 601.06 895.85 721.53 932.05 TRUE FALSE 688.0010934 933.0228771 733.4465478 676.1246492 1070.418608 792.982862 715.1079973 819.7419508 790.8361804 742.0976984 0.927103122 1.257277686 0.988342302 0.91109924 1.442422757 1.068569359 0.963630528 1.104628073 1.065676638 1 9.535465322 -9.218535326 0.739516929 1.001800182 1.093694313 0.024345504 0.154121082 4.68016265 5.373390954 0.155637945 0.057404548 6.05E-10 9.218535326 0.091894131 TPPGPCCS(ph)PGVGWAQR ddPTM_K562_Paclitaxel_30min_R1 2 TPPGPCCSPGVGWAQR 16 0 H3BSW6;Q2VPK5-3;Q2VPK5;Q2VPK5-5 H3BSW6 CTU2 Cytoplasmic tRNA 2-thiolation protein 2 1 T(0.033)PPGPCCS(0.967)PGVGWAQR;T(0.15)PPGPCCS(0.85)PGVGWAQR 176.42 2.43E-09 98947000 735.6 628.102 1012.17 706.503 611.43 388.89 616.69 729.61 883.29 792.42 TRUE FALSE 745.9006695 696.6803005 756.6351651 661.1910598 694.7171176 457.8541812 733.7037082 667.6250764 968.1339511 630.924369 1.18223468 1.104221575 1.199248598 1.047971979 1.101109977 0.725687901 1.162902789 1.058169741 1.534469104 1 9.301323265 -11.20180133 6.165885133 0.99999868 1.110216518 0.033451246 0.187201443 3.38E-06 4.38E-07 0.180400705 0.043753074 6.28E-12 11.20180133 0.110217838 TPPRAS(ph)LT(ph)RSPSTAS(ph)LT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 TPPRASLTRSPSTASLTR 18 2 A8MUU9 A8MUU9 Putative uncharacterized protein ENSP00000383309 4 T(0.211)PPRAS(0.737)LT(0.724)RS(0.097)PS(0.116)T(0.116)AS(0.998)LT(1)R 56.551 0.028356 0 0 0 0 0 0 0 0 65.096 0 0 TRUE FALSE 0 0 0 0 0 0 0 59.56568848 0 0 0 TPPSTTVGSHS(ph)PPETPVLTR ddPTM_K562_Paclitaxel_30min_R1 2 TPPSTTVGSHSPPETPVLTR 20 0 Q9ULU4-19;Q9ULU4-16;H7C4X9;A0A087WVZ6;Q9ULU4-22;Q9ULU4-7;Q9ULU4-11;Q9ULU4-10;Q9ULU4-13;Q9ULU4;Q9ULU4-20;Q9ULU4-5;Q9ULU4-9;Q9ULU4-14;Q9ULU4-12;Q9ULU4-4;Q9ULU4-18;Q9ULU4-21;Q9ULU4-23;Q9ULU4-15;Q9ULU4-6;Q9ULU4-3;Q9ULU4-2 Q9ULU4-19 ZMYND8 Protein kinase C-binding protein 1 1 TPPSTTVGS(0.012)HS(0.988)PPETPVLTR;TPPST(0.001)T(0.001)VGS(0.035)HS(0.953)PPET(0.009)PVLTR 143.48 3.20E-13 1484210000 2060.91 1899.35 2420.5 1905.76 2173.41 1630 1866 2201.2 2012.6 2349.5 TRUE FALSE 2089.769098 2106.727456 1809.414839 1783.533083 2469.465238 1919.057614 2220.063759 2014.194321 2205.919223 1870.67061 1.117122965 1.126188354 0.967254646 0.953419097 1.32009624 1.025866127 1.186774276 1.076723133 1.179213064 1 10.86933983 TPQCQHVS(ph)PGMLGSINR ddPTM_K562_Paclitaxel_30min_R1 1 TPQCQHVSPGMLGSINR 17 0 Q6P0N0 Q6P0N0 MIS18BP1 Mis18-binding protein 1 1 TPQCQHVS(0.972)PGMLGS(0.028)INR 86.573 0.0094104 4608600 527.17 620.7 615.18 445.6 507.06 589.28 594.18 678.83 360.73 648.21 TRUE FALSE 534.5520065 688.4701251 459.8702006 417.0212104 576.1301566 693.7805341 706.9225532 621.1591544 395.3797283 516.1044462 1.035743851 1.333974412 0.891040959 0.808017086 1.116305354 1.34426382 1.369727694 1.203553193 0.766084716 1 9.011519249 -6.990681835 24.95710375 1.171374374 1.022229175 0.059004412 0.206000987 519.6147819 1391688.499 0.06779643 0.076777025 1.02E-07 6.990681835 -0.149145199 TPQEAIMDGTEIAVS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 TPQEAIMDGTEIAVSPR 17 0 Q06587 Q06587 RING1 E3 ubiquitin-protein ligase RING1 1 TPQEAIMDGTEIAVS(1)PR;TPQEAIMDGTEIAVS(1)PR 210.66 5.39E-18 73197000 1137.24 1440.08 1535.37 1449.75 1166.55 1096.79 1186.97 1850.72 1157.13 1725.1 TRUE FALSE 1153.164869 1597.312804 1147.746854 1356.769524 1325.45386 1291.290307 1412.191361 1693.489784 1268.277507 1373.523673 0.839566795 1.162930669 0.835622186 0.987802067 0.965002559 0.940129633 1.028152182 1.232952746 0.923375062 1 10.42366606 -7.962221574 6.826117045 1.072559051 0.962483311 0.129206437 0.112166376 0.32371205 42.6572037 0.044730737 0.029725013 1.09E-08 7.962221574 -0.11007574 TPQEAITDGLEIVVS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 3 TPQEAITDGLEIVVSPR 17 0 X6RFN3;Q99496-2;Q99496 X6RFN3 RNF2 E3 ubiquitin-protein ligase RING2 1 TPQEAITDGLEIVVS(1)PR;TPQEAITDGLEIVVS(1)PR;TPQEAITDGLEIVVS(1)PR 149.94 7.51E-08 40298200 1332.97 1273.8 1724.64 1224.65 1257.52 1127.88 1423.08 1745.97 1591.58 1541.88 TRUE FALSE 1351.635693 1412.877792 1289.233302 1146.10643 1428.815514 1327.893682 1693.102001 1597.63895 1744.45837 1227.64401 1.100999705 1.150885583 1.05016869 0.933582066 1.163867948 1.081660214 1.379147365 1.301386182 1.42098064 1 10.26167656 -7.747909936 24.68379799 1.300494047 1.079181618 0.378730508 0.120763088 180.0656555 328521.0368 0.044392906 0.034182451 1.79E-08 7.747909936 -0.22131243 TPQMHGTEMANS(ph)PQPPPLS(ph)PHPCDVVDEGVTK ddPTM_K562_Paclitaxel_30min_R1 1 TPQMHGTEMANSPQPPPLSPHPCDVVDEGVTK 32 0 J3QRB7;Q9UHV7 J3QRB7 MED13 Mediator of RNA polymerase II transcription subunit 13 2 TPQMHGTEMANS(1)PQPPPLS(0.999)PHPCDVVDEGVT(0.001)K 82.503 2.18E-07 8151800 864.26 1037.4 1849.1 1057.7 771.34 720.89 738.02 1391 813.26 1671.3 TRUE FALSE 876.3623065 1150.66684 1382.271836 989.8638561 876.4095669 848.7297197 878.0554423 1272.825868 891.3772567 1330.688143 0.658578279 0.864715634 1.038764675 0.743873658 0.658613794 0.637812642 0.659850655 0.956517028 0.669861877 1 10.37795679 -11.37460375 9.380586593 1.000000311 0.771350377 0.213537316 0.134633075 9.26E-07 6.18E-08 0.137965904 0.033461601 4.22E-12 11.37460375 -0.228649934 TPQPS(ph)SPMDQMGK ddPTM_K562_Paclitaxel_30min_R1 1 TPQPSSPMDQMGK 13 0 O14497-2;O14497 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 T(0.072)PQPS(0.479)S(0.449)PMDQMGK 106.58 0.011141 4034000 1905.8 2193.8 3435.9 2331.6 1803.3 1617.5 1707.2 2432.2 1789.4 2853.3 TRUE FALSE 1932.48708 2433.326503 2568.46455 2182.061612 2048.93999 1904.340914 2031.132288 2225.569429 1961.279865 2271.795894 0.850642914 1.071102606 1.130587725 0.960500729 0.901903202 0.838253524 0.8940646 0.979652017 0.863316934 1 11.14961751 -6.512257983 9.413314223 0.909275102 1.026632272 0.251986203 0.080239256 0.252141485 192.4597297 0.023287489 0.032319894 3.07E-07 6.512257983 0.11735717 TPQPSS(ph)PMDQMGK ddPTM_K562_Paclitaxel_30min_R1 2 TPQPSSPMDQMGK 13 0 O14497-2;O14497 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 1 TPQPS(0.133)S(0.866)PMDQMGK;T(0.001)PQPS(0.152)S(0.847)PMDQMGK 107.61 0.0053516 82362000 4052.3 3890.8 7271 4975.1 3978.4 3491.2 3380.83 5080.2 3432.56 6380 TRUE FALSE 4109.044702 4315.610702 5435.346123 4656.019354 4520.325435 4110.315301 4022.324843 4648.6053 3762.272725 5079.752498 0.808906478 0.849571058 1.070002156 0.9165839 0.889871197 0.809156608 0.791834808 0.915124369 0.740640952 1 12.31054249 -7.03871656 4.653533198 0.842450441 0.917049727 0.082535763 0.091551255 0.457525104 23.10080041 0.030340992 0.031560901 9.15E-08 7.03871656 0.074599286 TPQS(ph)PAPCVLLR ddPTM_K562_Paclitaxel_30min_R1 2 TPQSPAPCVLLR 12 0 Q9Y613 Q9Y613 FHOD1 FH1/FH2 domain-containing protein 1 1 TPQS(1)PAPCVLLR;T(0.001)PQS(0.999)PAPCVLLR 167.22 0.00071262 242120000 2566.6 2454.9 2361.72 2494.5 2307.4 2241.1 2195.9 2895.2 2311.5 2819.6 TRUE FALSE 2602.540319 2722.934284 1765.474577 2334.513935 2621.706945 2638.527618 2612.560562 2649.234689 2533.529903 2244.963972 1.159279325 1.212907787 0.78641555 1.039889265 1.167816935 1.17530956 1.163742757 1.180078933 1.128539226 1 11.13247658 -6.755780206 24.79042384 1.148279678 1.042485626 0.11185034 0.115326613 247.4706091 1084055.457 0.035663837 0.044755433 1.75E-07 6.755780206 -0.105794052 TPS(ph)GEFLER ddPTM_K562_Paclitaxel_30min_R1 2 TPSGEFLER 9 0 B3KT28;B1ANM7;Q9UNN5-2;Q9UNN5 B3KT28 FAF1 FAS-associated factor 1 1 T(0.065)PS(0.935)GEFLER;T(0.378)PS(0.622)GEFLER 115 0.0041505 76209000 2687.5 2839.4 3888.8 3097.5 2570.9 2446.5 2695.5 3446.3 1941.69 3680.7 TRUE FALSE 2725.133292 3149.415294 2907.024344 2898.840214 2921.100106 2880.352424 3206.957054 3153.515304 2128.198 2930.57132 0.929898301 1.074676215 0.991965056 0.989172382 0.996768134 0.982863787 1.094311212 1.076075263 0.726205838 1 11.51696623 -8.741957055 24.99999928 0.863102716 1.017898267 0.383639434 0.078002905 198.2540767 254404.3653 0.049586983 0.018682694 1.81E-09 8.741957055 0.154795551 TPS(ph)IQPSLLPHAAPFAK ddPTM_K562_Paclitaxel_30min_R1 2 TPSIQPSLLPHAAPFAK 17 0 A0A494C1F2;P35658-2;P35658-4;P35658;P35658-3;P35658-5;A0A0A0MSW3;H0YF36 A0A494C1F2 NUP214 Nuclear pore complex protein Nup214 1 T(0.166)PS(0.834)IQPSLLPHAAPFAK;T(0.153)PS(0.847)IQPSLLPHAAPFAK 114.53 0.00038625 280060000 10295.6 8598.3 14736 10077.6 7217 7832.3 8986 13811.1 16617.7 16210.1 TRUE FALSE 10439.77016 9537.091472 11015.71455 9431.267842 8200.077585 9221.248434 10691.04659 12637.76085 18213.90433 12906.47272 0.808878645 0.738938646 0.853503105 0.730739377 0.635346137 0.714466968 0.828347669 0.979180069 1.411222472 1 13.65580715 -8.414942367 2.800649206 1.204543726 0.75124765 0.715827201 0.112239122 0.136157698 2.009697346 0.076170154 0.029432629 3.85E-09 8.414942367 -0.453296075 TPS(ph)SNTLDDYMSCFR ddPTM_K562_Paclitaxel_30min_R1 1 TPSSNTLDDYMSCFR 15 0 P33981-2;P33981 P33981-2 TTK Dual specificity protein kinase TTK 1 T(0.004)PS(0.915)S(0.078)NT(0.003)LDDYMSCFR 85.473 0.019118 7455800 263.91 486.07 475.89 613.56 282.58 433.97 305.42 396.49 496.83 564.85 TRUE FALSE 267.6055542 539.1407664 355.7456838 574.2090078 321.0721801 510.9284863 363.3718506 362.8056997 544.5527414 449.7332599 0.595031718 1.198801188 0.791014842 1.276776834 0.713916912 1.136070048 0.807971931 0.806713072 1.210834932 1 8.812925772 -5.238118383 24.03474045 0.979961333 0.595030983 0.270953866 0.194971837 5193.913442 5352740.391 0.04457317 2.35285732 5.78E-06 5.238118383 -0.38493035 TPS(ph)SPLQSCTPSLS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 TPSSPLQSCTPSLSPR 16 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 2 T(0.083)PS(0.458)S(0.458)PLQSCTPS(0.049)LS(0.951)PR 110.61 0.0065975 34171000 2742.6 2420.4 3696.3 3200.3 2386 2477.2 2323.8 2860.2 2821 2856.7 TRUE FALSE 2781.004862 2684.667457 2763.12335 2995.047082 2711.013595 2916.496638 2764.728919 2617.208157 3091.969655 2274.502972 1.222686845 1.180331479 1.214825122 1.316791897 1.19191473 1.282256684 1.215531021 1.15067256 1.359404535 1 11.1513356 -11.67796575 2.733612888 0.969181287 1.233987298 0.575035321 0.061108051 16931563.39 15511437.02 3639017.366 0.014584387 2.10E-12 11.67796575 0.26480601 TPSHPTATVLST(ph)GSPPSESPSR ddPTM_K562_Paclitaxel_30min_R1 3 TPSHPTATVLSTGSPPSESPSR 22 0 A0A087WV69;P56645;P56645-2 A0A087WV69 PER3 Period circadian protein homolog 3 1 TPSHPTAT(0.001)VLS(0.265)T(0.694)GS(0.031)PPS(0.004)ES(0.002)PS(0.002)R;TPSHPTAT(0.001)VLS(0.171)T(0.421)GS(0.313)PPS(0.065)ES(0.008)PS(0.022)R;TPSHPTATVLS(0.064)T(0.803)GS(0.094)PPS(0.017)ES(0.017)PS(0.006)R 162.2 4.54E-18 438934000 7613.1 7580.3 9940.2 8406.1 7745.7 7349.4 6715.7 9935.9 8230 10060.4 TRUE FALSE 7719.706888 8407.942789 7430.673571 7866.97037 8800.795476 8652.712899 7989.969017 9091.783277 9020.528273 8010.084958 0.963748441 1.049669614 0.927664764 0.9821332 1.098714373 1.080227357 0.997488673 1.135042053 1.126146392 1 12.96760183 -6.752930019 24.97931734 1.076280732 0.981927291 0.435162529 0.051331491 178.1275521 522893.0366 0.015311265 0.019449765 1.77E-07 6.752930019 -0.094353441 TPSHPTATVLSTGS(ph)PPSESPSR ddPTM_K562_Paclitaxel_30min_R1 1 TPSHPTATVLSTGSPPSESPSR 22 0 A0A087WV69;P56645;P56645-2 A0A087WV69 PER3 Period circadian protein homolog 3 1 TPSHPTATVLS(0.001)T(0.008)GS(0.463)PPS(0.147)ES(0.102)PS(0.278)R 89.882 0.00032922 392520000 3283.3 3171.2 4055.9 3252.9 2888.9 2898.7 2967.5 3742.5 2695.6 3768.1 TRUE FALSE 3329.27633 3517.44234 3031.937882 3044.273553 3282.417089 3412.743745 3530.567634 3424.551265 2954.524424 3000.159152 1.109699906 1.172418583 1.010592348 1.014704021 1.094080988 1.137520902 1.176793448 1.141456533 0.984789231 1 11.55082332 -8.770162973 24.99821712 0.992394525 1.10593035 0.417503152 0.054207217 229.8576937 658652.2077 0.055428373 0.015183024 1.70E-09 8.770162973 0.113535826 TPSHPTATVLSTGSPPSESPS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 TPSHPTATVLSTGSPPSESPSR 22 0 A0A087WV69;P56645;P56645-2 A0A087WV69 PER3 Period circadian protein homolog 3 1 TPSHPTATVLSTGSPPS(0.03)ES(0.03)PS(0.94)R;TPSHPTATVLSTGS(0.003)PPS(0.222)ES(0.127)PS(0.648)R 175.99 2.11E-20 43135000 4415.1 4309.8 5249.6 4844.2 4056.4 3873 4116.3 5236.6 3500.5 5715.3 TRUE FALSE 4476.925022 4780.358539 3924.273554 4533.514694 4608.950355 4559.82217 4897.346436 4791.718144 3836.738666 4550.518723 0.983827404 1.050508487 0.862379389 0.996263277 1.012840653 1.002044481 1.076217182 1.053004819 0.843143145 1 12.1518153 TPSNTPSAEADWS(ph)PGLELHPDYK ddPTM_K562_Paclitaxel_30min_R1 1 TPSNTPSAEADWSPGLELHPDYK 23 0 A0A2R8Y7R5;A0A2R8Y755;A0A2R8Y586;A0A2R8YF51;A0A2R8Y5D2;A0A2R8YCS7;Q9Y3Z3-3;Q9Y3Z3-4;Q9Y3Z3 A0A2R8Y7R5 SAMHD1 Deoxynucleoside triphosphate triphosphohydrolase SAMHD1 1 TPSNT(0.003)PS(0.005)AEADWS(0.992)PGLELHPDYK 103.85 5.23E-05 17051000 2988.2 3407.4 5575.8 3905.8 3014.3 2398 2735.9 4176.1 2580.3 4281 TRUE FALSE 3030.044019 3779.431455 4168.120329 3655.29947 3424.898693 2823.25163 3255.022743 3821.314239 2828.149344 3408.52985 0.888959215 1.108815713 1.222849883 1.07239767 1.004802317 0.828290129 0.954963837 1.121103351 0.829727029 1 11.7349339 -6.871738985 3.927485635 0.951731427 1.086642462 0.222334138 0.109494514 0.340494507 9.767971801 0.035725054 0.041334751 1.34E-07 6.871738985 0.134911036 TPSS(ph)PCPASK ddPTM_K562_Paclitaxel_30min_R1 3 TPSSPCPASK 10 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 TPS(0.008)S(0.989)PCPAS(0.003)K;T(0.001)PS(0.013)S(0.985)PCPASK;T(0.017)PS(0.029)S(0.954)PCPAS(0.001)K 99.752 0.01006 90584000 11309.8 10332.5 19007.4 13185.2 10540.9 8508.6 8867.4 12891.9 10956.4 15381.3 TRUE FALSE 11468.17209 11460.63729 14208.74679 12339.56029 11976.74904 10017.48074 10549.94286 11796.65263 12008.81117 12246.58262 0.936438552 0.935823295 1.160221364 1.007592132 0.977966622 0.817981722 0.861460147 0.963260772 0.98058467 1 13.5800916 -7.01181566 21.2826771 0.916140604 1.012614465 0.211958679 0.07716446 119.6451798 215510.9513 0.026305967 0.027783004 9.73E-08 7.01181566 0.096473862 TPSS(ph)PLQSCTPS(ph)LSPR ddPTM_K562_Paclitaxel_30min_R1 1 TPSSPLQSCTPSLSPR 16 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 2 T(0.008)PS(0.032)S(0.96)PLQS(0.072)CT(0.124)PS(0.46)LS(0.344)PR 135.69 1.32E-06 35674000 1555.8 1388.9 2174.7 1474.9 1447.7 1702 1426.4 1920.6 1489.8 2083.9 TRUE FALSE 1577.586 1540.544799 1625.670089 1380.306515 1644.90125 2003.825803 1697.051954 1757.433042 1632.901947 1659.200036 0.950811214 0.928486479 0.979791498 0.831910852 0.99138212 1.207705978 1.022813354 1.059205041 0.984150139 1 10.69627212 -7.000967238 24.99778544 1.061262782 0.925285679 0.461311495 0.067066557 31.45775064 813045.1044 0.02062912 0.023092443 9.98E-08 7.000967238 -0.135977103 TPSS(ph)PLQSCTPSLSPR ddPTM_K562_Paclitaxel_30min_R1 2 TPSSPLQSCTPSLSPR 16 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 1 TPS(0.021)S(0.979)PLQSCTPSLSPR;T(0.001)PS(0.156)S(0.844)PLQSCTPSLSPR 183.75 3.70E-10 62396000 3136.9 2467.92 3550.3 3276.5 2722.5 2704.4 2527.3 2586.1 2575.5 2913 TRUE FALSE 3180.826278 2737.375852 2653.982855 3066.359955 3093.350592 3183.987368 3006.841982 2366.394663 2822.888283 2319.329001 1.371442463 1.180244739 1.144289083 1.322089257 1.333726518 1.372805396 1.296427536 1.020292792 1.217114209 1 11.17949177 -8.250824559 24.72524618 1.089027626 1.285239623 0.53801985 0.088814579 504.2127731 1174472.882 0.044098918 0.025122049 5.61E-09 8.250824559 0.196211997 TPSSPLQSCTPS(ph)LSPR ddPTM_K562_Paclitaxel_30min_R1 1 TPSSPLQSCTPSLSPR 16 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 1 TPSSPLQSCTPS(0.588)LS(0.412)PR 156 2.97E-07 18624000 846.79 758.28 1322.4 988.78 881.06 884.68 916.74 1036.8 862.72 1237.7 TRUE FALSE 858.6476726 841.0715747 988.5437648 925.3640764 1001.075288 1041.565576 1090.686629 948.7173685 945.5881107 985.4560606 0.871320099 0.853484603 1.003133274 0.939021143 1.015849746 1.056937613 1.106783623 0.962719097 0.959543656 1 9.944647736 -5.825811781 1.187018118 1.017769916 0.837227546 0.553676921 0.049243126 0.533283934 1.176282494 0.017216459 0.094620069 1.49E-06 5.825811781 -0.180542369 TPSSPLQSCTPSLS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 TPSSPLQSCTPSLSPR 16 0 R4GNJ5;A0A590TQL1;Q96AP0-2;Q96AP0 R4GNJ5 ACD Adrenocortical dysplasia protein homolog 1 TPSSPLQSCT(0.001)PS(0.009)LS(0.99)PR 147.1 5.96E-08 16935000 1040.7 937.07 1397.9 703.33 828.11 654.37 826.74 844.19 936.91 1170 TRUE FALSE 1055.273011 1039.382472 1044.982856 658.2215618 940.912602 770.4133317 983.6095991 772.4707902 1026.904392 931.5533578 1.132810055 1.115751946 1.121763823 0.706584928 1.010046922 0.827020079 1.055881116 0.829228711 1.102357029 1 9.863494596 -6.087400564 24.99999991 0.928610277 1.122924854 0.37303872 0.113029163 68.49444708 19590.25818 0.028323017 0.049056933 8.18E-07 6.087400564 0.194314577 TPSSS(ph)PPIT(ph)PPASETK ddPTM_K562_Paclitaxel_30min_R1 1 TPSSSPPITPPASETK 16 0 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 2 T(0.187)PS(0.061)S(0.09)S(0.801)PPIT(0.86)PPASETK 111.11 0.0021374 10857000 3153.3 2802.9 5198.4 3512 3070 2705.7 2073.1 3039.3 2999.3 3856.2 TRUE FALSE 3197.455929 3108.930101 3885.999627 3286.756039 3488.185976 3185.517905 2466.459903 2781.092494 3287.396166 3070.304323 1.041413356 1.012580439 1.26567246 1.070498457 1.13610431 1.037525134 0.803327502 0.90580353 1.070706946 1 11.58416594 -7.530302292 24.57861357 0.934726397 1.105059404 0.410496888 0.090228339 141.9340985 469922.7067 0.034883178 0.027080359 2.95E-08 7.530302292 0.170333007 TPSSS(ph)PPITPPASETK ddPTM_K562_Paclitaxel_30min_R1 2 TPSSSPPITPPASETK 16 0 F5GZ90;Q9NZJ0 F5GZ90 DTL Denticleless protein homolog 1 TPSS(0.041)S(0.958)PPIT(0.001)PPASETK;TPSS(0.016)S(0.982)PPIT(0.002)PPASETK 153.23 2.63E-07 42661000 6138.9 5957.1 10433.9 7130.1 5013.2 4558.8 4685.8 6805.6 5966.7 6978.8 TRUE FALSE 6224.86354 6607.516324 7799.7329 6672.807299 5696.082714 5367.239171 5574.906088 6227.421801 6539.828195 5556.516729 1.120281616 1.189147202 1.403709065 1.200897545 1.025117532 0.965935933 1.003309512 1.120742023 1.176965447 1 12.43996505 -6.68140857 5.112660427 1.048473917 1.242669833 0.50096759 0.088179393 0.182448888 8.329517541 0.028501582 0.036737682 2.08E-07 6.68140857 0.194195915 TPST(ph)VTLNNNSAPANR ddPTM_K562_Paclitaxel_30min_R1 2 TPSTVTLNNNSAPANR 16 0 Q9ULH0-2;Q9ULH0-4;Q9ULH0;Q9ULH0-5 Q9ULH0-2 KIDINS220 Kinase D-interacting substrate of 220 kDa 1 T(0.034)PS(0.405)T(0.561)VTLNNNSAPANR;T(0.069)PS(0.34)T(0.59)VT(0.001)LNNNSAPANR 246.38 5.20E-63 60971000 1152.39 1043.44 1325.62 1044.24 1433.87 1150.08 1495.09 1933.89 1774.5 2198.6 TRUE FALSE 1168.527015 1157.366308 990.9508359 977.2671202 1629.18737 1354.03054 1778.775523 1769.593974 1944.948654 1750.524113 0.667529802 0.661154165 0.566088081 0.558271156 0.930685477 0.773500079 1.016138829 1.0108938 1.111066474 1 10.77357122 -7.299688758 1.01333083 1.052205535 0.612364242 0.808577687 0.086068631 0.218416893 0.471695945 0.049802948 0.043573955 5.02E-08 7.299688758 -0.439841293 TPT(ph)PEPAEVETR ddPTM_K562_Paclitaxel_30min_R1 1 TPTPEPAEVETR 12 0 F8W6G1;Q9UHY1 F8W6G1 NRBP1 Nuclear receptor-binding protein 1 T(0.196)PT(0.804)PEPAEVETR 132.97 0.0013948 164560000 1272 1175.3 1645.6 1642.8 1429.3 1185.5 1504.1 1646.3 954.41 1780.1 TRUE FALSE 1289.811924 1303.623229 1230.147927 1537.438161 1623.994858 1395.73178 1789.495123 1506.436539 1046.085345 1417.314643 0.910039229 0.919783927 0.867942721 1.084754305 1.145825217 0.984772003 1.262595523 1.062880812 0.738075593 1 10.46894436 -6.262003642 24.99585302 1.053865999 0.901308151 0.198495686 0.12727522 78.21409073 3464799.565 0.035937086 0.057183478 5.47E-07 6.262003642 -0.152557847 TPTHQPPKPGS(ph)PGRPACPLSNLLLQSYEER ddPTM_K562_Paclitaxel_30min_R1 1 TPTHQPPKPGSPGRPACPLSNLLLQSYEER 30 2 Q96F63 Q96F63 CCDC97 Coiled-coil domain-containing protein 97 1 T(0.001)PT(0.001)HQPPKPGS(0.99)PGRPACPLS(0.004)NLLLQS(0.001)Y(0.001)EER 49.959 0.0049431 12762000 904.2 652.8 991.9 839.54 701.29 538.39 578.38 868.19 548.55 1029.2 TRUE FALSE 916.8615897 724.0749116 741.4825773 785.695662 796.8175709 633.8659071 688.1245857 794.4318404 601.2406785 819.4484751 1.118876437 0.883612495 0.904855644 0.958810329 0.972382761 0.773527472 0.839741127 0.969471376 0.733713829 1 9.678509429 -7.228036585 24.53496831 0.859910845 0.959049545 0.230064925 0.09474876 809.6708233 594718.3807 0.030096564 0.03009489 5.92E-08 7.228036585 0.0991387 TPTS(ph)PLK ddPTM_K562_Paclitaxel_30min_R1 1 TPTSPLK 7 0 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 1 T(0.004)PT(0.046)S(0.95)PLK 93.598 0.016163 719140000 5975.5 4927.5 10278 7170.8 5180.9 4246 4451.5 6534.1 5307.4 7944 TRUE FALSE 6059.175436 5465.501114 7683.191783 6710.896983 5886.626293 4998.968483 5296.148887 5978.98742 5817.199484 6325.008439 0.957971123 0.864109695 1.214732258 1.061009965 0.930690662 0.790349694 0.837334675 0.945293193 0.919714106 1 12.62685169 -6.91269986 5.326515271 0.888194439 1.0255463 0.265947686 0.098359129 0.281391186 13.18093455 0.032725965 0.03725428 1.22E-07 6.91269986 0.137351861 TPTS(ph)SPASSPLVAK ddPTM_K562_Paclitaxel_30min_R1 2 TPTSSPASSPLVAK 14 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 T(0.001)PT(0.004)S(0.496)S(0.496)PAS(0.004)SPLVAK;T(0.016)PT(0.015)S(0.484)S(0.484)PASSPLVAK 211.83 9.26E-15 94841000 5912.1 4759.8 8685 5928.4 4731.2 3800.3 4749.9 7023.7 7728.2 8314 TRUE FALSE 5994.88764 5279.491061 6492.364335 5548.178959 5375.66954 4474.229846 5651.168729 6426.992844 8470.528141 6619.602236 0.905626566 0.797554124 0.980778618 0.838143858 0.812083468 0.675906148 0.85370216 0.970903177 1.279612859 1 12.69252881 -8.509813098 3.922853406 1.141412383 0.836654529 0.604043644 0.097238165 0.140335006 4.844038706 0.067054067 0.025803091 3.09E-09 8.509813098 -0.304757853 TPTSS(ph)PASS(ph)PLVAK ddPTM_K562_Paclitaxel_30min_R1 1 TPTSSPASSPLVAK 14 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 2 T(0.002)PT(0.078)S(0.078)S(0.839)PAS(0.124)S(0.878)PLVAK 120.29 0.0067658 41935000 3899.1 3436.8 5432.7 4015.1 3533.8 3270.2 3221.8 4958.6 4518.8 6652.4 TRUE FALSE 3953.69943 3812.041447 4061.147694 3757.589457 4015.163388 3850.124054 3833.119731 4537.335979 4952.850931 5296.637228 0.746454639 0.719709748 0.766740768 0.709429265 0.758058975 0.726899708 0.723689308 0.856644657 0.935093479 1 12.37086099 -8.617325997 1.796055771 0.992028657 0.734796015 0.955645375 0.020275037 0.061028395 0.358389354 0.017447764 0.005416189 2.41E-09 8.617325997 -0.257232641 TPTSS(ph)PASSPLVAK ddPTM_K562_Paclitaxel_30min_R1 1 TPTSSPASSPLVAK 14 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 TPT(0.001)S(0.025)S(0.973)PAS(0.001)SPLVAK 135.81 2.79E-05 73419000 6178.8 4514.2 8630.7 5766.8 4453.4 3921.4 5057.5 7037.3 7151.6 9106.9 TRUE FALSE 6265.322263 5007.075622 6451.773042 5396.943259 5060.028477 4616.805231 6017.134223 6439.43744 7838.543134 7250.908781 0.86407407 0.690544561 0.889788196 0.744312668 0.697847488 0.636720909 0.829845528 0.888086947 1.081042856 1 12.82394611 -8.4431905 2.214249417 1.037426389 0.755603703 0.665457046 0.077942917 0.193272268 1.748654511 0.062619864 0.02209507 3.60E-09 8.4431905 -0.281822686 TPTSSPAS(ph)SPLVAK ddPTM_K562_Paclitaxel_30min_R1 1 TPTSSPASSPLVAK 14 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 T(0.003)PT(0.002)S(0.002)S(0.02)PAS(0.486)S(0.486)PLVAK 113.76 0.0026732 18872000 2530.9 2175.7 3541.7 2352.6 2081 1928.6 1361.7 2210.5 2339.8 2667.9 TRUE FALSE 2566.340408 2413.250284 2647.554032 2201.714766 2364.467432 2270.610131 1620.075466 2022.704227 2564.548245 2124.180516 1.208155517 1.136085312 1.246388437 1.036500782 1.113119819 1.068934638 0.762682576 0.95222803 1.20731182 1 11.05269066 -6.79131844 1.245252558 0.982986599 1.187781393 0.33365878 0.112376558 0.530781617 1.734301538 0.047943037 0.067066775 1.62E-07 6.79131844 0.204794794 TPTVPDS(ph)PGYMGPTR ddPTM_K562_Paclitaxel_30min_R1 3 TPTVPDSPGYMGPTR 15 0 Q765P7;A0A087WXN9 Q765P7 MTSS1L MTSS1-like protein 1 TPT(0.001)VPDS(0.998)PGY(0.001)MGPTR;T(0.001)PTVPDS(0.996)PGY(0.001)MGPT(0.001)R;TPT(0.001)VPDS(0.999)PGYMGPTR 160.03 4.98E-05 71791000 4116.3 4531.9 4966.6 3926.41 3730.9 3547.18 3920 4725.3 2961.93 5336.4 TRUE FALSE 4173.9409 5026.708168 3712.720404 3674.587637 4239.111745 4176.222568 4663.799536 4323.856271 3246.436611 4248.838751 0.98237216 1.183078122 0.87382003 0.864845162 0.997710667 0.98290917 1.097664517 1.017656005 0.76407621 1 12.05285288 -5.766551725 24.99960854 0.955601106 1.082725137 0.218224023 0.100135456 182.291103 891429.2677 0.026684005 0.058385142 1.71E-06 5.766551725 0.127124031 TPVASTHSISSAAT(ph)PDRIR ddPTM_K562_Paclitaxel_30min_R1 1 TPVASTHSISSAATPDRIR 19 1 J3KNR0;P27448-8;P27448-3;P27448-4;P27448-2;P27448;H0YIY6;P27448-6;P27448-7;A2SY06 J3KNR0 MARK3 MAP/microtubule affinity-regulating kinase 3 1 TPVASTHSIS(0.033)S(0.049)AAT(0.919)PDRIR 110.1 0.0023487 21288000 752.29 736.78 723.32 766.58 599.46 677.49 744.35 719.41 562.42 725.54 TRUE FALSE 762.824381 817.224132 540.7089201 717.4149899 681.1166009 797.6333391 885.5865267 658.2916301 616.442954 577.6745497 1.320508894 1.414679134 0.936009593 1.241901673 1.179066312 1.380765934 1.533019807 1.139554495 1.067111151 1 9.174113126 -8.512682864 22.56718341 1.056814256 1.280101826 0.317305752 0.150746585 186.385449 412557.4921 0.096915191 0.041519273 3.07E-09 8.512682864 0.22328757 TPVLLHDHDER ddPTM_K562_Paclitaxel_30min_R1 1 TPVLLHDHDER 11 0 A0A1B0GU86;C9JMV9;A0A1B0GW23;Q03154-2;Q03154-3;Q03154-4;Q03154 A0A1B0GU86 ABHD14A-ACY1;ACY1 Aminoacylase-1 0 117.25 0.0030029 8134700 855.92 738.97 1025.9 911.11 690.8 729.6 838.25 854.95 751.82 1075.6 FALSE TRUE 867.9055207 819.6532436 766.8988568 852.6754826 784.8986553 858.9843159 997.3035615 782.3166611 824.0356702 856.3921296 1.013444065 0.957100393 0.895499655 0.995660111 0.916517829 1.003026868 1.164540783 0.913502862 0.962217706 1 9.742127727 -7.496464279 23.6124874 1.014418138 0.95512353 0.132519049 0.067636738 747.6016477 668299.5717 0.024572795 0.021584316 3.19E-08 7.496464279 -0.059294609 TPVQYS(ph)QQQNSPQK ddPTM_K562_Paclitaxel_30min_R1 1 TPVQYSQQQNSPQK 14 0 P46013 P46013 MKI67 Antigen KI-67 1 T(0.001)PVQYS(0.727)QQQNS(0.272)PQK 166.52 1.03E-52 0 1843.1 1616.2 3821.7 2576.2 1840.2 1536.4 1722.6 2280.8 1203.2 2894.6 TRUE FALSE 1868.909086 1792.662182 2856.864569 2410.974063 2090.866395 1808.858968 2049.454357 2087.031804 1318.772736 2304.678931 0.8109195 0.777835974 1.239593303 1.046121449 0.907226758 0.784863758 0.889258078 0.905562929 0.572215382 1 11.17035006 -7.014042666 6.109295115 0.829527775 0.975021658 0.146473708 0.157326133 0.325773893 48.4325239 0.052892342 0.055992975 9.68E-08 7.014042666 0.145493882 TPVQYSQQQNS(ph)PQK ddPTM_K562_Paclitaxel_30min_R1 2 TPVQYSQQQNSPQK 14 0 P46013 P46013 MKI67 Antigen KI-67 1 TPVQYSQQQNS(1)PQK;TPVQYS(0.001)QQQNS(0.999)PQK 241.66 4.78E-46 29427000 5621.4 4828.1 10104.3 6641.1 4896.9 4591.4 4422.5 6744.9 2918.4 7845.3 TRUE FALSE 5700.116944 5355.248286 7553.344497 6215.16957 5563.940685 5405.620324 5261.646288 6171.878645 3198.72536 6246.423554 0.912540896 0.857330317 1.209227077 0.9949965 0.890740219 0.865394458 0.842345423 0.988065986 0.512089091 1 12.60881468 -6.898725631 3.146940224 0.842945851 0.999256961 0.1843678 0.150833145 0.440960688 8.731744057 0.04900838 0.056477466 1.26E-07 6.898725631 0.15631111 TPVQYSQQQNS(ph)PQKHK ddPTM_K562_Paclitaxel_30min_R1 2 TPVQYSQQQNSPQKHK 16 1 P46013 P46013 MKI67 Antigen KI-67 1 TPVQYSQQQNS(1)PQKHK;TPVQYSQQQNS(1)PQKHK 80.975 0.012355 46236000 5990.7 4481.4 12253 6492.6 4458.6 3751.3 3294.2 6287.4 5952.9 8425.4 TRUE FALSE 6074.588283 4970.694407 9159.578607 6076.193696 5065.936805 4416.540384 3919.257253 5753.246125 6524.702643 6708.298855 0.905533342 0.740976888 1.36541004 0.90577266 0.755174585 0.658369652 0.584240109 0.857631159 0.97263148 1 12.71173125 -6.530231938 13.14557138 0.783846419 1.003973663 0.18052252 0.188071721 0.923613112 1637.583222 0.057178359 0.074916806 2.95E-07 6.530231938 0.220127243 TQDPS(ph)S(ph)PGTTPPQAR ddPTM_K562_Paclitaxel_30min_R1 2 TQDPSSPGTTPPQAR 15 0 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 2 T(0.001)QDPS(0.999)S(0.999)PGT(0.002)TPPQAR;T(0.001)QDPS(0.857)S(0.894)PGT(0.096)T(0.151)PPQAR 145.49 3.11E-05 12401400 5817.9 5470.2 7233.9 6941.6 5420.2 5139 4715 6847.9 5125.4 6696.7 TRUE FALSE 5899.36855 6067.454935 5407.612477 6496.396845 6158.523005 6050.329495 5609.646636 6266.128152 5617.717571 5331.908864 1.106427116 1.137951734 1.01419822 1.218399828 1.155031558 1.134739856 1.052089745 1.175212914 1.053603449 1 12.38043641 -8.981417397 6.268289677 1.00008463 1.122936441 0.353405385 0.055112624 0.144109154 20.910859 0.052191078 0.013537096 1.04E-09 8.981417397 0.122851811 TQDPSS(ph)PGTT(ph)PPQAR ddPTM_K562_Paclitaxel_30min_R1 1 TQDPSSPGTTPPQAR 15 0 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 2 TQDPS(0.165)S(0.923)PGT(0.289)T(0.622)PPQAR 114.06 0.0032076 117640000 2492.6 2106.2 3297.5 2556.2 2139.9 2137.6 2178.5 2761.8 2651.5 2910.7 TRUE FALSE 2527.50409 2336.162039 2465.005342 2392.256773 2431.390609 2516.673347 2591.859002 2527.167851 2906.188422 2317.497742 1.090617714 1.008053642 1.063649512 1.032258513 1.049144758 1.08594425 1.118386851 1.090472627 1.254019958 1 11.17835222 -7.55180036 1.858856061 1.126132659 1.045654122 0.203994665 0.061219929 0.479422575 3.348693787 0.027043845 0.020046243 2.81E-08 7.55180036 -0.080478537 TQDPSS(ph)PGTTPPQAR ddPTM_K562_Paclitaxel_30min_R1 1 TQDPSSPGTTPPQAR 15 0 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 1 TQDPSS(0.997)PGT(0.002)TPPQAR 228.49 4.08E-35 199040000 4595.1 4282.6 6131.6 5429.3 4652.8 4063.7 3799.4 4561.1 4140.7 5855.8 TRUE FALSE 4659.445577 4750.188751 4583.601745 5081.088999 5286.590133 4784.340138 4520.316316 4173.606086 4538.432736 4662.384746 0.9993696 1.018832424 0.983102424 1.089804741 1.13388114 1.026157299 0.969528806 0.895165524 0.973414461 1 12.18685235 -7.772099372 3.821784804 0.94830075 1.045553665 0.416138873 0.047805767 0.216061387 6.868261422 0.022107294 0.015342853 1.69E-08 7.772099372 0.097252914 TQDPSSPGT(ph)TPPQAR ddPTM_K562_Paclitaxel_30min_R1 1 TQDPSSPGTTPPQAR 15 0 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 1 TQDPS(0.028)S(0.289)PGT(0.677)T(0.006)PPQAR 217.39 1.04E-18 184910000 4022.3 3919.7 5832.9 4781.8 4236.6 3541.8 3530.6 4396.5 4525.2 4641 TRUE FALSE 4078.62461 4347.666102 4360.312255 4475.116751 4813.696646 4169.888501 4200.512919 4022.989883 4959.865679 3695.161653 1.103774339 1.176583465 1.18000582 1.211074689 1.302702588 1.128472552 1.13676026 1.088718238 1.342259459 1 11.85142176 TQDPSSPGTT(ph)PPQAR ddPTM_K562_Paclitaxel_30min_R1 2 TQDPSSPGTTPPQAR 15 0 Q13112 Q13112 CHAF1B Chromatin assembly factor 1 subunit B 1 TQDPS(0.008)S(0.001)PGT(0.118)T(0.873)PPQAR;TQDPSSPGT(0.216)T(0.784)PPQAR 144.41 8.62E-06 34849000 6593.5 5987.5 8655.8 7140.3 5985.6 6613.1 6055 7164.1 6774.8 8857.4 TRUE FALSE 6685.829343 6641.235498 6470.536236 6682.353117 6800.940057 7785.840432 7203.904641 6555.464988 7425.549811 7052.257018 0.948041078 0.941717734 0.917512822 0.947548154 0.964363613 1.104021083 1.021503417 0.929555598 1.052932386 1 12.78386934 -7.014492596 23.90890129 1.019082291 0.939725082 0.473265052 0.041681127 365.2386692 602546.8061 0.013977731 0.014510006 9.67E-08 7.014492596 -0.079357209 TQEISRPNS(ph)PSEGEGESSDSR ddPTM_K562_Paclitaxel_30min_R1 2 TQEISRPNSPSEGEGESSDSR 21 1 Q9P2R6;A0A590UJ84;B1AKN3;Q9P2R6-2 Q9P2R6 RERE Arginine-glutamic acid dipeptide repeats protein 1 TQEISRPNS(0.84)PS(0.158)EGEGES(0.001)S(0.001)DSR;TQEISRPNS(0.927)PS(0.073)EGEGESSDSR 113.52 2.86E-05 23914000 1537.18 1411.06 1933.13 2025.34 1560.83 1431.74 1509.06 1835.02 1274.27 1519.84 TRUE FALSE 1558.705263 1565.124303 1445.087423 1895.443757 1773.441471 1685.638986 1795.396257 1679.123597 1396.669327 1210.095774 1.288084213 1.293388785 1.194192604 1.566358464 1.465538108 1.392979814 1.483681124 1.387595621 1.154180816 1 10.24090552 -8.921297407 3.089318131 1.003208302 1.387720303 0.608288647 0.102065169 0.161193955 3.141819978 0.10617286 0.028524281 1.20E-09 8.921297407 0.384512002 TQGLEYRT(ph)HRAVLAACS(ph)HYFKK ddPTM_K562_Paclitaxel_30min_R1 1 TQGLEYRTHRAVLAACSHYFKK 22 3 O15156;O15156-2 O15156 ZBTB7B Zinc finger and BTB domain-containing protein 7B 2 T(0.323)QGLEY(0.222)RT(0.455)HRAVLAACS(0.627)HY(0.373)FKK 43.306 0.028877 13828000 1677.3 1702.1 2957.3 1787 1605.4 1515.4 1427.5 1962.7 1580.5 2099.8 TRUE FALSE 1700.787375 1887.941034 2210.69304 1672.389818 1824.08266 1784.134913 1698.360673 1795.956384 1732.314087 1671.859607 1.017302749 1.129246155 1.322295861 1.000317138 1.091050141 1.067155941 1.015851251 1.074226793 1.036160022 1 10.70723799 TQLSQGRSS(ph)PQLDPLR ddPTM_K562_Paclitaxel_30min_R1 1 TQLSQGRSSPQLDPLR 16 1 Q8ND56-2;Q8ND56 Q8ND56-2 LSM14A Protein LSM14 homolog A 1 TQLS(0.001)QGRS(0.032)S(0.966)PQLDPLR 74.338 0.022841 24630000 1740.4 1818.5 2421.4 1754.6 1515.3 1583.1 1543.6 2261.2 1860.7 1848.5 TRUE FALSE 1764.77097 2017.04998 1810.087623 1642.067809 1721.709514 1863.840557 1836.490042 2069.096946 2039.428549 1471.774685 1.199076861 1.370488295 1.229867344 1.115705974 1.169818676 1.266389873 1.247806516 1.405851702 1.385693455 1 10.52334111 -7.76202536 2.685160027 1.297943815 1.221960863 0 0.121331997 0.820796855 12.10766254 0.055308224 0.037238634 1.73E-08 7.76202536 -0.075982952 TQLWASEPGT(ph)PPLPTSLPSQNPILK ddPTM_K562_Paclitaxel_30min_R1 2 TQLWASEPGTPPLPTSLPSQNPILK 25 0 Q9BXP5-5;Q9BXP5-4;Q9BXP5-2;Q9BXP5-3;Q9BXP5;H7C3A1 Q9BXP5-5 SRRT Serrate RNA effector molecule homolog 1 TQLWAS(0.005)EPGT(0.995)PPLPTSLPSQNPILK;T(0.001)QLWAS(0.112)EPGT(0.887)PPLPTSLPSQNPILK 162.52 8.95E-26 158936000 7053.1 7098.9 12781.6 8719 6446.8 5925.4 6355.1 8705 6143.8 11576.6 TRUE FALSE 7151.865161 7873.981909 9554.726999 8159.802365 7324.963305 6976.186493 7560.947049 7965.455915 6733.939441 9217.282565 0.775919053 0.854262832 1.03660997 0.885272021 0.79469879 0.75685935 0.820301102 0.864187016 0.73057752 1 13.17012576 -6.689928307 6.657895496 0.817184392 0.897174149 0.085326687 0.091292028 0.433654383 32.18093315 0.026946003 0.034722259 2.04E-07 6.689928307 0.079989757 TQMAEVLPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 TQMAEVLPSPR 11 0 P11388;P11388-2;P11388-3;P11388-4 P11388 TOP2A DNA topoisomerase 2-alpha 1 TQMAEVLPS(1)PR;TQMAEVLPS(1)PR;TQMAEVLPS(1)PR;TQMAEVLPS(1)PR 136.33 0.00078695 746278000 9125.6 9005.2 11070.1 9857.6 7944.3 8444.7 8442.2 9887.5 9055 11402.3 TRUE FALSE 9253.386555 9988.41819 8275.316342 9225.377657 9026.448158 9942.248976 10044.06338 9047.495159 9924.773209 9078.505001 1.019263255 1.100227206 0.911528533 1.016178066 0.994265923 1.095141653 1.10635654 0.996584257 1.093216692 1 13.14823903 -7.247505622 24.81186014 1.06105239 1.008462374 0.169796781 0.055070234 1313.283687 2338566.935 0.018198215 0.018111358 5.66E-08 7.247505622 -0.052590017 TQPDGTSVPGEPAS(ph)PISQR ddPTM_K562_Paclitaxel_30min_R1 5 TQPDGTSVPGEPASPISQR 19 0 A0A087WY61;Q14980-5;Q14980-2;Q14980;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 TQPDGTSVPGEPAS(1)PISQR;TQPDGTSVPGEPAS(1)PISQR;TQPDGTSVPGEPAS(1)PISQR;TQPDGTSVPGEPAS(1)PISQR;TQPDGTSVPGEPAS(0.993)PIS(0.007)QR 325.98 2.67E-266 1224363900 9540.97 8353.86 12827.48 10721.01 8821.69 8743.1 9467.79 10156.04 6527.19 12077.2 TRUE FALSE 9674.573016 9265.962686 9589.024026 10033.4124 10023.35353 10293.56603 11264.25373 9293.22101 7154.155764 9615.860011 1.006105851 0.963612477 0.997209196 1.043423302 1.042377231 1.070477941 1.171424471 0.966447203 0.743995415 1 13.23120018 -6.006148936 22.02833204 1.015607542 0.983747067 0 0.103013983 379.2824436 1358873.858 0.028935912 0.056854 9.86E-07 6.006148936 -0.031860475 TQPDGTSVPGEPASPISQRLPPKVESLESLY(ph)FTPIPAR ddPTM_K562_Paclitaxel_30min_R1 1 TQPDGTSVPGEPASPISQRLPPKVESLESLYFTPIPAR 38 2 A0A087WY61;Q14980-5;Q14980-2;Q14980;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 TQPDGTS(0.001)VPGEPAS(0.018)PIS(0.103)QRLPPKVES(0.234)LES(0.269)LY(0.289)FT(0.086)PIPAR 52.155 0.0010573 23841000 1531.3 1206.7 2376.7 1577.6 1221.1 1138.5 905.38 1551.2 2560.8 2262 TRUE FALSE 1552.742924 1338.451587 1776.67269 1476.419797 1387.434493 1340.39699 1077.171129 1419.415878 2806.776282 1801.003158 0.862154471 0.743170039 0.986490602 0.819776351 0.770367607 0.744250216 0.59809508 0.788125146 1.558451616 1 10.814585 -8.738947674 24.99862145 1.279225636 0.786647815 0.613481585 0.155620471 123.5931678 137369.6708 0.101064001 0.038137339 1.82E-09 8.738947674 -0.492577821 TQPSSGVDSAVGTLPATS(ph)PQSTSVQAK ddPTM_K562_Paclitaxel_30min_R1 2 TQPSSGVDSAVGTLPATSPQSTSVQAK 27 0 Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 Q13428 TCOF1 Treacle protein 1 TQPSSGVDSAVGTLPAT(0.315)S(0.48)PQS(0.069)T(0.104)S(0.032)VQAK;TQPSSGVDSAVGTLPAT(0.277)S(0.714)PQS(0.003)T(0.005)S(0.001)VQAK 123.02 2.16E-14 27329000 3669.8 2645.81 5630.4 3599.8 2878.29 2985.9 2333.89 3541.31 3146.44 4086.7 TRUE FALSE 3721.188522 2934.688483 4208.935884 3368.92494 3270.361828 3515.407441 2776.733444 3240.453611 3448.669621 3253.828297 1.143633955 0.901918668 1.293533494 1.035372685 1.005081255 1.080391195 0.8533743 0.995889554 1.059880641 1 11.66792241 -6.512197374 24.61277449 0.997907244 1.104006924 0.189542358 0.10484478 740.9808603 1707423.095 0.029791769 0.041186018 3.07E-07 6.512197374 0.10609968 TQQS(ph)PISNGSPELGIK ddPTM_K562_Paclitaxel_30min_R1 1 TQQSPISNGSPELGIK 16 0 Q15723-2;Q15723-3;Q15723-1;Q15723 Q15723-2 ELF2 ETS-related transcription factor Elf-2 1 T(0.024)QQS(0.698)PIS(0.232)NGS(0.047)PELGIK 100.69 0.0034101 6558100 1091.2 1101.4 1810.9 1417.6 862.21 1010.2 688.88 1505.1 1187.2 1484.9 TRUE FALSE 1106.480167 1221.654577 1353.715898 1326.681481 979.6575993 1189.344786 819.5913838 1377.23236 1301.235865 1182.276565 0.935889452 1.033306938 1.145007808 1.122141401 0.828619655 1.005978484 0.693231523 1.164898638 1.100618843 1 10.20735184 -5.245904253 21.02909727 1.007540222 0.935888985 0.024391917 0.140350212 1649.486759 2232465.752 0.036219379 0.664194755 5.68E-06 5.245904253 -0.071651237 TQS(ph)LSALPK ddPTM_K562_Paclitaxel_30min_R1 1 TQSLSALPK 9 0 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 T(0.013)QS(0.986)LS(0.002)ALPK 84.289 0.027289 8416000 2385 1806.2 3824.6 2155.6 1626.3 1274.8 1560.8 2489.8 1801.9 3183.7 TRUE FALSE 2418.397358 2003.407024 2859.032428 2017.349464 1847.829593 1500.867881 1856.953652 2278.275949 1974.980546 2534.860192 0.95405552 0.790342217 1.127885647 0.795842497 0.728967065 0.59209099 0.732566497 0.898777753 0.779127998 1 11.30769046 -6.491925061 24.59329455 0.770128872 0.944243424 0.259215854 0.127193275 724.6012415 575709.3056 0.035876874 0.053137309 3.22E-07 6.491925061 0.174114551 TQS(ph)PEFEAQSSK ddPTM_K562_Paclitaxel_30min_R1 1 TQSPEFEAQSSK 12 0 H3BS42;Q9H5H4 H3BS42 ZNF768 Zinc finger protein 768 1 T(0.002)QS(0.885)PEFEAQS(0.105)S(0.008)K 87.647 0.020943 0 625.92 879.81 1593.6 1137.3 504.13 788.06 701.59 770.37 664.04 1419.7 TRUE FALSE 634.6848111 975.8706311 1191.275971 1064.358668 572.801041 927.8113761 834.71304 704.92226 727.824009 1130.364361 0.561486927 0.863323956 1.053886704 0.941606711 0.506740181 0.820807351 0.738445999 0.623623926 0.643884427 1 10.14257217 -6.721962057 24.99974633 0.709168433 0.869865982 0.124412143 0.168704337 288.5737964 182743.4463 0.049795452 0.064284649 1.90E-07 6.721962057 0.160697548 TQSEESRPQSLQQPATSTTETPAS(ph)PAHTTPQTQSTSGR ddPTM_K562_Paclitaxel_30min_R1 2 TQSEESRPQSLQQPATSTTETPASPAHTTPQTQSTSGR 38 1 B8ZZU6;E9PBF9;P15336-5;P15336;P15336-4;F5H629;P15336-2 B8ZZU6 ATF2 Cyclic AMP-dependent transcription factor ATF-2 1 TQSEESRPQSLQQPAT(0.002)S(0.004)T(0.004)T(0.004)ET(0.011)PAS(0.89)PAHT(0.074)T(0.01)PQT(0.002)QSTSGR;TQSEESRPQS(0.001)LQQPAT(0.003)S(0.007)T(0.007)T(0.007)ET(0.019)PAS(0.871)PAHT(0.003)T(0.021)PQT(0.007)QS(0.008)T(0.008)S(0.037)GR 78.834 6.71E-08 521120000 943.12 967.11 1560.36 1445.82 1270.23 1230.33 1054.7 1072.67 1373.05 1402.59 TRUE FALSE 956.3265898 1072.70234 1166.42782 1353.091576 1443.256831 1448.511751 1254.823819 981.5399881 1504.937587 1116.741388 0.856354569 0.960564686 1.044492335 1.211642723 1.292382325 1.297087908 1.123647635 0.878932221 1.347615127 1 10.12507941 -5.824779894 2.079795298 1.167398605 0.877934314 0.36745512 0.135656835 0.374656075 3.132716882 0.039564314 0.133401194 1.50E-06 5.824779894 -0.28946429 TQSEESRPQSLQQPATSTTETPAS(ph)PAHTTPQTQSTSGRR ddPTM_K562_Paclitaxel_30min_R1 4 TQSEESRPQSLQQPATSTTETPASPAHTTPQTQSTSGRR 39 2 B8ZZU6;E9PBF9;P15336-5;P15336;P15336-4;F5H629;P15336-2 B8ZZU6 ATF2 Cyclic AMP-dependent transcription factor ATF-2 1 TQSEESRPQSLQQPATS(0.001)T(0.001)T(0.001)ET(0.024)PAS(0.96)PAHT(0.004)T(0.001)PQT(0.004)QS(0.002)TSGRR;TQSEESRPQSLQQPATS(0.003)T(0.003)T(0.003)ET(0.013)PAS(0.883)PAHT(0.011)T(0.045)PQT(0.01)QS(0.01)T(0.01)S(0.01)GRR;TQSEESRPQSLQQPAT(0.001)S(0.001)T(0.002)T(0.002)ET(0.002)PAS(0.438)PAHT(0.049)T(0.049)PQT(0.216)QS(0.08)T(0.08)S(0.08)GRR;TQSEESRPQSLQQPAT(0.003)S(0.003)T(0.003)T(0.003)ET(0.029)PAS(0.683)PAHT(0.051)T(0.015)PQT(0.015)QS(0.081)T(0.081)S(0.035)GRR 99.311 1.01E-17 117123000 2148.44 2454.85 2721.58 2719.25 2217.41 2350.56 2195.82 2648.78 2912.3 2915.16 TRUE FALSE 2178.524789 2722.878825 2034.483469 2544.849476 2519.458783 2767.398813 2612.465382 2423.749606 3192.039428 2321.048792 0.938594999 1.173124337 0.876536278 1.096422223 1.085482904 1.192305316 1.125553841 1.044247589 1.375257357 1 11.18056114 -6.712891928 2.351267107 1.146210121 1.012891044 0.210280131 0.118812251 0.471787403 5.33958075 0.037012741 0.048709336 1.94E-07 6.712891928 -0.133319076 TQSLS(ph)ALPK ddPTM_K562_Paclitaxel_30min_R1 1 TQSLSALPK 9 0 I3L2J0;A0A0A0MQR4;Q96RK0 I3L2J0 CIC Protein capicua homolog 1 T(0.005)QS(0.38)LS(0.615)ALPK 98.156 0.011976 7793100 1855 1561.5 3322.9 1977.6 1619.3 1287.4 1505.5 1956.1 1810.3 3073.2 TRUE FALSE 1880.975723 1731.989851 2483.992798 1850.765587 1839.876075 1515.702314 1791.160766 1789.917095 1984.187404 2446.880153 0.768724092 0.707835996 1.015167332 0.756377702 0.751927336 0.619442808 0.732018184 0.731509916 0.810905022 1 11.25672773 -9.12283342 4.707385748 0.999988337 0.761360204 0.365709946 0.094533112 1.070198648 39.51878119 0.096147128 0.02509713 7.54E-10 9.12283342 -0.238628134 TQT(ph)PPLGQTPQLGLK ddPTM_K562_Paclitaxel_30min_R1 1 TQTPPLGQTPQLGLK 15 0 H0Y3P2;D3DQV9;P78344-2;P78344;E9PKF8 H0Y3P2 EIF4G2 Eukaryotic translation initiation factor 4 gamma 2 1 T(0.001)QT(0.998)PPLGQT(0.001)PQLGLK 141.86 7.67E-06 67319000 2293.2 1637.6 3885.8 2663.8 1509.3 1264.3 1468 2305.2 1256.6 3009.4 TRUE FALSE 2325.311875 1816.398706 2904.781731 2492.955791 1714.892213 1488.505853 1746.545337 2109.358871 1377.302045 2396.082628 0.970463976 0.758070145 1.212304491 1.040429809 0.715706626 0.621224759 0.72891699 0.880336449 0.574814085 1 11.22646194 -6.764535736 24.9982311 0.739673719 0.993870012 0.371488041 0.153455418 84.61853855 683162.8245 0.046673019 0.055199397 1.72E-07 6.764535736 0.254196293 TQTES(ph)STPPGIPGGSR ddPTM_K562_Paclitaxel_30min_R1 1 TQTESSTPPGIPGGSR 16 0 H3BQ10;E9PER6;Q6A1A2;O15530-4;O15530-5;O15530-3;O15530 H3BQ10 PDPK1;PDPK2P Putative 3-phosphoinositide-dependent protein kinase 2;3-phosphoinositide-dependent protein kinase 1 1 TQT(0.001)ES(0.51)S(0.243)T(0.243)PPGIPGGS(0.003)R 133.23 4.13E-07 19378000 2595.5 2508.6 2856.8 2827.4 2141.8 1966.8 1947.2 2271.3 2290 2654.5 TRUE FALSE 2631.845008 2782.497432 2135.565508 2646.063219 2433.549421 2315.584365 2316.671035 2078.338888 2509.964732 2113.511443 1.245247579 1.316528208 1.010434798 1.251974872 1.151424767 1.095610044 1.096124198 0.983358238 1.187580384 1 11.04542621 -2 0.18453669 1.007417953 2.175270801 0.383149292 0.086611499 55.90388205 0.640002465 0.181308561 18.44457003 0.01 2 1.167852848 TQTESS(ph)TPPGIPGGSR ddPTM_K562_Paclitaxel_30min_R1 1 TQTESSTPPGIPGGSR 16 0 H3BQ10;E9PER6;Q6A1A2;O15530-4;O15530-5;O15530-3;O15530 H3BQ10 PDPK1;PDPK2P Putative 3-phosphoinositide-dependent protein kinase 2;3-phosphoinositide-dependent protein kinase 1 1 T(0.012)QT(0.003)ES(0.073)S(0.454)T(0.454)PPGIPGGS(0.003)R 102.39 0.0027854 12582000 1382.3 1429.8 1747.1 1216 1539.6 1394.4 998.84 1443.8 1290.9 1702.6 TRUE FALSE 1401.656465 1585.910399 1306.022997 1138.011203 1749.319586 1641.677262 1188.364676 1321.140178 1414.896713 1355.609185 1.033967961 1.169887617 0.963421472 0.839483248 1.290430608 1.211025478 0.876627784 0.97457305 1.04373497 1 10.4047256 -7.772850273 24.99862388 0.971615079 1.081266928 0.157122999 0.125723038 481.9867587 1055910.558 0.05616169 0.038240542 1.69E-08 7.772850273 0.109651849 TQTPPVS(ph)PAPQPT(ph)EERLPSSPVYEDAASFK ddPTM_K562_Paclitaxel_30min_R1 1 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 2 T(0.113)QT(0.283)PPVS(0.666)PAPQPT(0.539)EERLPS(0.143)S(0.141)PVY(0.114)EDAAS(0.002)FK 51.861 0.025088 26939000 1978.5 1114.8 3818 2331.4 1354.9 1391.8 1050.7 2106.1 1658.6 3009.2 TRUE FALSE 2006.205104 1236.517634 2854.09868 2181.874439 1539.460319 1638.616188 1250.06484 1927.173659 1817.915941 2395.923388 0.837341091 0.516092309 1.191231194 0.910661188 0.642533199 0.683918441 0.521746583 0.804355293 0.758753786 1 11.22636606 -4.923361116 20.87311209 0.770463398 3.498199432 0.00458689 0.200273477 4840.451947 1419342.112 0.049406016 47429.40126 1.19E-05 4.923361116 2.727736034 TQTPPVSPAPQPTEERLPS(ph)SPVYEDAASFK ddPTM_K562_Paclitaxel_30min_R1 3 TQTPPVSPAPQPTEERLPSSPVYEDAASFK 30 1 H0YEV2;H0YCD9;Q14247-3;Q14247;Q14247-2 H0YEV2 CTTN Src substrate cortactin 1 TQTPPVS(0.001)PAPQPT(0.007)EERLPS(0.471)S(0.471)PVY(0.049)EDAASFK;TQTPPVS(0.006)PAPQPT(0.061)EERLPS(0.427)S(0.427)PVY(0.076)EDAAS(0.002)FK;TQTPPVS(0.03)PAPQPT(0.141)EERLPS(0.378)S(0.378)PVY(0.072)EDAAS(0.002)FK 62.858 0.00067395 377623000 5513.7 4553.8 8966 5629.7 4454.5 4575.4 4079.2 5826.1 4730.3 7222.1 TRUE FALSE 5590.908811 5050.999284 6702.42241 5268.63624 5061.278315 5386.782948 4853.206905 5331.13644 5184.666451 5750.232056 0.972292728 0.878399208 1.16559164 0.916247586 0.880186794 0.93679401 0.844001922 0.927116747 0.901644734 1 12.48940446 -6.482648509 24.97459693 0.907889873 1.000757433 0.225547615 0.075848283 725.7816596 450558.9018 0.020737923 0.030754239 3.29E-07 6.482648509 0.09286756 TQTPQLHFLDT(ph)DDEVSPTSWGDSR ddPTM_K562_Paclitaxel_30min_R1 1 TQTPQLHFLDTDDEVSPTSWGDSR 24 0 Q86US8 Q86US8 SMG6 Telomerase-binding protein EST1A 1 TQTPQLHFLDT(1)DDEVSPTSWGDSR 121.41 1.00E-08 15258000 3049.2 2716.3 2699.9 3012.5 1798.3 1972.3 2637.8 2803.4 4012.3 3415.9 TRUE FALSE 3091.898208 3012.87482 2018.276853 2819.291733 2043.258905 2322.059713 3138.30878 2565.233672 4397.699342 2719.737705 1.13683691 1.107781392 0.74208511 1.036604276 0.751270574 0.853780756 1.153901266 0.943191568 1.616957155 1 11.40925181 -8.719362012 24.97362643 1.30847962 0.960725707 0.325356311 0.197345624 133.709635 79359.01678 0.128315249 0.048497676 1.91E-09 8.719362012 -0.347753913 TQTPQLHFLDTDDEVS(ph)PTSWGDSR ddPTM_K562_Paclitaxel_30min_R1 1 TQTPQLHFLDTDDEVSPTSWGDSR 24 0 Q86US8 Q86US8 SMG6 Telomerase-binding protein EST1A 1 TQTPQLHFLDTDDEVS(0.87)PT(0.095)S(0.031)WGDS(0.004)R 142.34 1.52E-19 19456000 742.69 1072 1109.4 1160.6 1022 971.12 944.84 1125.1 755.25 1336.6 TRUE FALSE 753.0899514 1189.044585 829.3182491 1086.164311 1161.213703 1143.334497 1124.118458 1029.515732 827.795137 1064.200186 0.707658165 1.11731289 0.779287826 1.020639091 1.091160965 1.074360361 1.056303571 0.967407961 0.777856598 1 10.05555385 -5.243694036 24.15752995 0.988817108 0.707657792 0.352909857 0.113516703 2770.870895 3772019.606 0.028586271 0.83488278 5.71E-06 5.243694036 -0.281159316 TQVLS(ph)PDSLFTAK ddPTM_K562_Paclitaxel_30min_R1 1 TQVLSPDSLFTAK 13 0 A8MQ02;J3KN01;P55196;P55196-5;P55196-1;H0Y8L4;H0Y948 A8MQ02 MLLT4 Afadin 1 T(0.01)QVLS(0.915)PDS(0.066)LFT(0.008)AK 99.711 0.0086923 18565000 1865.3 1830.3 3871.6 2295.1 1590.3 1320.4 1568.2 2119.3 2205.2 2560.8 TRUE FALSE 1891.419955 2030.138344 2894.166697 2147.902558 1806.925784 1554.554401 1865.757763 1939.252237 2417.019313 2038.907554 0.92766342 0.995699064 1.419469309 1.053457551 0.886222517 0.76244477 0.915077174 0.95112318 1.185448211 1 10.99358065 -6.549167308 8.908232303 0.939198581 1.124555291 0.185618224 0.155391105 0.398256177 122.821907 0.048395473 0.062983653 2.82E-07 6.549167308 0.18535671 TRDDGDEEGLLT(ph)HS(ph)EEELEHSQDTDADDGALQ ddPTM_K562_Paclitaxel_30min_R1 1 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9-2;Q9UKM9 Q9UKM9-2 RALY RNA-binding protein Raly 2 TRDDGDEEGLLT(0.5)HS(0.5)EEELEHS(0.358)QDT(0.641)DADDGALQ 45.558 0.013142 214600000 860.46 749.53 933.28 801.01 826.9 690.8 629.87 869.93 720.79 832.41 TRUE FALSE 872.5090947 831.3662201 697.6619213 749.6368038 939.5377795 813.3036807 749.3845444 796.0240166 790.0251001 662.7643851 1.316469494 1.254391815 1.052654513 1.13107587 1.417604507 1.227138481 1.130695253 1.201066374 1.192015017 1 9.372352268 -10.47496494 0.478910396 0.958799062 1.22271067 0.317258717 0.096129588 11.70236521 2.431028293 0.903127968 0.054068969 3.35E-11 10.47496494 0.263911609 TRDDGDEEGLLTHS(ph)EEELEHS(ph)QDT(ph)DADDGALQ ddPTM_K562_Paclitaxel_30min_R1 1 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9-2;Q9UKM9 Q9UKM9-2 RALY RNA-binding protein Raly 3 TRDDGDEEGLLT(0.213)HS(0.903)EEELEHS(0.98)QDT(0.903)DADDGALQ 56.854 0.00087778 31585000 338.85 370.12 672.89 499 627.89 413.11 411.84 676.64 369.73 687.65 TRUE FALSE 343.5949454 410.5309533 503.0105973 466.9963734 713.4192483 486.3692581 489.9844901 619.1552085 405.2442185 547.5065525 0.627563166 0.749819251 0.918729822 0.852951204 1.30303326 0.888335045 0.89493813 1.130863559 0.74016323 1 9.096732421 -5.645515837 1.499207183 0.985335209 0.597818512 0.382795995 0.146903523 0.599042475 2.068000967 0.0424677 0.28168146 2.26E-06 5.645515837 -0.387516697 TRDDGDEEGLLTHS(ph)EEELEHSQDTDADDGALQ ddPTM_K562_Paclitaxel_30min_R1 1 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9-2;Q9UKM9 Q9UKM9-2 RALY RNA-binding protein Raly 1 TRDDGDEEGLLT(0.001)HS(0.458)EEELEHS(0.271)QDT(0.271)DADDGALQ 80.406 4.60E-06 471400000 832.32 718.67 1195.8 798.55 784.19 765.24 504.19 824.98 735.07 1065.6 TRUE FALSE 843.9750479 797.136821 893.9055005 747.3345772 891.0099544 900.9445695 599.8574205 754.8927996 805.6767579 848.4301351 0.994749023 0.939543267 1.053599423 0.88084398 1.050186595 1.061896003 0.707020408 0.88975246 0.949608842 1 9.728652054 TRDDGDEEGLLTHSEEELEHS(ph)QDT(ph)DADDGALQ ddPTM_K562_Paclitaxel_30min_R1 1 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9-2;Q9UKM9 Q9UKM9-2 RALY RNA-binding protein Raly 2 TRDDGDEEGLLT(0.182)HS(0.182)EEELEHS(0.701)QDT(0.934)DADDGALQ 92.819 3.95E-10 201500000 1228.6 1299 1948.8 1569.4 1478 1117.7 1188 1350.8 1253.2 1348.5 TRUE FALSE 1245.804191 1440.829213 1456.801338 1468.745708 1679.328623 1315.908402 1413.416798 1236.041109 1373.575459 1073.67496 1.160317822 1.341960339 1.356836466 1.36796122 1.564094056 1.225611522 1.316428948 1.151224677 1.279321499 1 10.06834159 -9.078918271 0.691577264 1.005968992 1.348988179 0.454621517 0.107438237 0.755967484 0.82110667 0.109618949 0.043194024 8.34E-10 9.078918271 0.343019187 TRDDGDEEGLLTHSEEELEHS(ph)QDTDADDGALQ ddPTM_K562_Paclitaxel_30min_R1 2 TRDDGDEEGLLTHSEEELEHSQDTDADDGALQ 32 1 Q9UKM9-2;Q9UKM9 Q9UKM9-2 RALY RNA-binding protein Raly 1 TRDDGDEEGLLTHS(0.274)EEELEHS(0.363)QDT(0.363)DADDGALQ;TRDDGDEEGLLTHS(0.004)EEELEHS(0.498)QDT(0.498)DADDGALQ 91.583 5.66E-10 465009000 3007.46 2490.25 4009.35 3268.89 2519.48 2656.46 2351.76 2925.02 2366.17 3345.45 TRUE FALSE 3049.573719 2762.143916 2997.140005 3059.238026 2862.675831 3127.545882 2797.994183 2676.521294 2593.451201 2663.645454 1.14488725 1.036978819 1.125202306 1.148515476 1.074721047 1.174159976 1.050437917 1.004833917 0.973647299 1 11.37918635 -8.057945761 3.40547378 0.992820286 1.113783185 0.684240966 0.037897104 0.144822129 3.315441671 0.018804279 0.010581334 8.75E-09 8.057945761 0.120962899 TRDELEVIHLIEEHR ddPTM_K562_Paclitaxel_30min_R1 2 TRDELEVIHLIEEHR 15 1 P10155-3;P10155-5;P10155-4;P10155 P10155-3 TROVE2 60 kDa SS-A/Ro ribonucleoprotein 0 ; 146.84 6.64E-06 49639000 6073.4 5567 7741.2 6008.1 5210.7 5074 6375.1 7022.7 5535.3 8344.3 FALSE TRUE 6158.446338 6174.823886 5786.838318 5622.767357 5920.485558 5973.802658 7584.741945 6426.077801 6066.990297 6643.72708 0.926956551 0.929421665 0.871022883 0.846327263 0.891139188 0.899164368 1.141639603 0.967239883 0.913190777 1 12.69777709 -7.568716232 24.99999583 1.005304082 0.891583579 0.469818455 0.058054538 116.4065775 63487.77174 0.022786422 0.017650294 2.70E-08 7.568716232 -0.113720503 TRHGS(ph)ASQVQK ddPTM_K562_Paclitaxel_30min_R1 1 TRHGSASQVQK 11 1 H0Y465;P21359-2;P21359-6;P21359;J3QSG6 H0Y465 NF1 Neurofibromin;Neurofibromin truncated 1 T(0.016)RHGS(0.962)AS(0.022)QVQK 77.068 0.02978 1677900 484.18 550.72 1005.2 767.36 623.89 383.86 532.57 732.23 792.49 1121.4 TRUE FALSE 490.9600138 610.849472 751.4248278 718.1449642 708.8743805 451.9321813 633.6223773 670.0224911 868.6122054 892.8580645 0.549874648 0.684150702 0.841594939 0.80432153 0.793938487 0.506163521 0.70965633 0.750424415 0.972844666 1 9.802287042 -8.742360284 3.370423184 1.003110656 0.704989794 0.562210316 0.100263359 0.188127104 4.1304161 0.09615729 0.027948343 1.81E-09 8.742360284 -0.298120862 TRHS(ph)SNPPLESHVGWVMDSR ddPTM_K562_Paclitaxel_30min_R1 1 TRHSSNPPLESHVGWVMDSR 20 1 Q6PKG0;Q6PKG0-3;H0YC33 Q6PKG0 LARP1 La-related protein 1 1 T(0.095)RHS(0.453)S(0.453)NPPLESHVGWVMDSR 96.723 0.00050795 28997000 1865.7 1781.9 2337.1 2561.7 1809.4 1802.6 1989.9 2458.3 2682.9 2919.2 TRUE FALSE 1891.825556 1976.453868 1747.0702 2397.404028 2055.870913 2122.2658 2367.473137 2249.452071 2940.604533 2324.265438 0.81394557 0.850356347 0.751665525 1.0314674 0.884525012 0.913090977 1.01858983 0.967812038 1.265175864 1 11.18255912 -7.466279739 0.625056016 1.100179153 0.81940427 0.510616922 0.095642546 0.656392198 0.544242255 0.078686429 0.071041198 3.42E-08 7.466279739 -0.280774882 TRLS(ph)TASEETVQNR ddPTM_K562_Paclitaxel_30min_R1 1 TRLSTASEETVQNR 14 1 O43379;O43379-4;H7C3R4;O43379-3;O43379-2 O43379 WDR62 WD repeat-containing protein 62 1 TRLS(0.949)T(0.046)AS(0.004)EETVQNR 119.54 0.0038327 5446600 1225.9 1045.8 1281.2 983.46 680.07 916.49 900.41 1015.9 1231.2 1211.9 TRUE FALSE 1243.066382 1159.983981 957.7452143 920.3852774 772.7070477 1079.016633 1071.258097 929.592954 1349.462261 964.9141148 1.288266347 1.202162931 0.992570426 0.95385202 0.800803964 1.118251476 1.110210827 0.963394503 1.398530958 1 9.914256726 -5.621064469 4.189819768 1.034620815 1.270715637 0.240906827 0.146714094 0.284121264 8.809548169 0.038400601 0.11537317 2.39E-06 5.621064469 0.236094822 TRPWLQELSMGS(ph)PGPVTNK ddPTM_K562_Paclitaxel_30min_R1 1 TRPWLQELSMGSPGPVTNK 19 1 A0A1B0GV70;Q96N21-2;Q96N21 A0A1B0GV70 ENTHD2 AP-4 complex accessory subunit tepsin 1 TRPWLQELSMGS(0.999)PGPVT(0.001)NK 123.64 2.55E-06 20403000 1882.2 1756.5 2986.5 2022.4 1421.4 1362.4 1548.3 2603.4 1994.2 3182.1 TRUE FALSE 1908.556607 1948.28061 2232.521138 1892.692316 1615.018745 1604.002511 1842.081842 2382.22492 2185.75182 2533.586273 0.753302395 0.768981357 0.881170364 0.7470408 0.637443754 0.633095675 0.727064976 0.940258062 0.862710634 1 11.30696524 -8.260308321 24.6544559 0.926113274 0.735078068 0.611491832 0.072556132 65.6261119 1430546.126 0.040909509 0.021909485 5.49E-09 8.260308321 -0.191035205 TRRGRLQ ddPTM_K562_Paclitaxel_30min_R1 1 TRRGRLQ 7 3 A0A096LNK7 A0A096LNK7 ARHGEF9 0 63.148 0.023542 17510000 3595.5 4270.4 3520.3 4158.8 3739.3 3938.6 3815.1 4002.9 3103.5 4111.1 FALSE TRUE 3645.848093 4736.656714 2631.556726 3892.073182 4248.655967 4637.055409 4538.995309 3662.82866 3401.605042 3273.255563 1.113829343 1.447078183 0.803957001 1.189052644 1.29799091 1.416649363 1.386691391 1.119017012 1.039211567 1 11.67651053 -8.50963465 5.885939204 1.035628375 1.23689669 0.199159921 0.175766423 0.27900279 37.41718938 0.114295225 0.047992502 3.09E-09 8.50963465 0.201268315 TRS(ph)LSSLR ddPTM_K562_Paclitaxel_30min_R1 1 TRSLSSLR 8 1 H0Y9X0;A0A286YEZ9;A0A2C9F2R7;O94915 H0Y9X0 FRYL Protein furry homolog-like 1 T(0.007)RS(0.845)LS(0.114)S(0.034)LR 87.789 0.013144 35377000 2273.6 2171.2 1904.8 2368.1 2343.3 2237 2349.1 2445.3 2103.1 2664.6 TRUE FALSE 2305.437415 2408.258959 1423.909682 2216.220665 2662.497132 2633.700541 2794.829462 2237.556502 2305.112152 2121.553057 1.086674409 1.135139633 0.671163833 1.044621843 1.254975511 1.241402157 1.317350727 1.05467855 1.086521095 1 11.05090504 -6.534675255 15.37689328 1.171727019 0.960824696 0.265362693 0.146140012 2.949385994 3841.643411 0.044512425 0.05779531 2.92E-07 6.534675255 -0.210902323 TRS(ph)MDDLLSACDTSSPLTR ddPTM_K562_Paclitaxel_30min_R1 2 TRSMDDLLSACDTSSPLTR 19 1 Q9NYA4;J3QR65 Q9NYA4 MTMR4 Myotubularin-related protein 4 1 T(0.005)RS(0.899)MDDLLS(0.089)ACDT(0.005)S(0.002)SPLTR;T(0.113)RS(0.786)MDDLLS(0.074)ACDT(0.018)S(0.004)S(0.004)PLTR 117.65 0.00035402 61314000 1965.53 1873.08 2832.3 2247.05 1868.98 1624.07 1849.58 2605.5 2006.12 2649.2 TRUE FALSE 1993.053484 2077.589209 2117.250836 2102.93427 2123.566718 1912.076011 2200.52815 2384.146512 2198.81679 2109.291586 0.94489235 0.984970131 1.003773423 0.996986042 1.006767738 0.906501512 1.0432546 1.130306748 1.042443256 1 11.04254283 -7.983850548 24.78907648 1.069181141 0.978080272 0.463957998 0.04165363 167.124819 256532.4819 0.016876723 0.011374474 1.04E-08 7.983850548 -0.09110087 TRS(ph)PDVISSASTALSQDIPEIASEALSR ddPTM_K562_Paclitaxel_30min_R1 1 TRSPDVISSASTALSQDIPEIASEALSR 28 1 Q6P2E9;Q6P2E9-2 Q6P2E9 EDC4 Enhancer of mRNA-decapping protein 4 1 T(0.041)RS(0.436)PDVIS(0.261)S(0.261)AS(0.002)TALSQDIPEIASEALSR 144.44 1.06E-24 670380000 843.38 777.7 1158.4 1027.8 594.63 720.49 877.84 988.56 794.56 1201 TRUE FALSE 855.1899221 862.611916 865.9475931 961.8815083 675.6286732 848.2587853 1044.405557 904.5756576 870.8810382 956.2355408 0.894329781 0.902091461 0.905579803 1.005904369 0.706550473 0.887081424 1.092205333 0.945975776 0.91073904 1 9.901222218 -7.57594034 24.99961624 0.98371622 0.882528468 0.2805191 0.081257783 139.0316299 65502.54767 0.031712606 0.024564482 2.65E-08 7.57594034 -0.101187752 TRS(ph)WDSSSPVDRPEPEAASPTTR ddPTM_K562_Paclitaxel_30min_R1 1 TRSWDSSSPVDRPEPEAASPTTR 23 2 C9J0I9;Q86WB0-2;Q86WB0 C9J0I9 ZC3HC1 Nuclear-interacting partner of ALK 1 T(0.138)RS(0.567)WDS(0.051)S(0.051)S(0.194)PVDRPEPEAASPTTR 73.072 0.007904 80317000 295.38 331.08 610.95 407.52 149.2 293.56 302.81 412.08 346.18 552.85 TRUE FALSE 299.5162313 367.228434 456.7081164 381.3834912 169.523566 345.6187442 360.2666167 377.0712319 379.4321358 440.1788665 0.680442098 0.834270934 1.037551212 0.866428446 0.385124273 0.785177959 0.818455051 0.856631839 0.861995349 1 8.781946071 -8.944275618 1.136997394 0.994066919 0.774191883 0.167813845 0.156538001 1.013807631 2.945990857 0.161216671 0.051908013 1.14E-09 8.944275618 -0.219875036 TRT(ph)PAS(ph)INATPANINLADLTR ddPTM_K562_Paclitaxel_30min_R1 1 TRTPASINATPANINLADLTR 21 1 Q7KZ85;Q7KZ85-2 Q7KZ85 SUPT6H Transcription elongation factor SPT6 2 T(0.443)RT(0.559)PAS(0.998)INAT(0.001)PANINLADLTR 66.793 0.011906 0 571.82 336.95 552.56 488.11 625.21 703.56 532.24 571.22 605.71 866.26 TRUE FALSE 579.8272442 373.7393405 413.059394 456.8048093 710.3741869 828.3264875 633.2297615 522.6912956 663.8911519 689.7157365 0.840675678 0.541874457 0.598883529 0.662308811 1.029952123 1.20096794 0.918102528 0.757835827 0.96255764 1 9.429858073 -6.753619373 24.20891039 0.974257731 0.647998817 0.60647043 0.125017856 87.13095434 269734.6557 0.04027895 0.050983958 1.76E-07 6.753619373 -0.326258914 TRTFS(ph)ATVR ddPTM_K562_Paclitaxel_30min_R1 1 TRTFSATVR 9 1 H3BTK3;I3L3X8;H3BSW7;H3BUY4;H3BPY5;H3BNU9;Q9Y2V2 H3BTK3 CARHSP1 Calcium-regulated heat stable protein 1 1 T(0.011)RT(0.22)FS(0.769)ATVR 76.165 0.028033 51200000 1144.8 1036.3 1229.9 1203.3 1121.9 1171.4 1043.3 1552.4 1137.4 1733.4 TRUE FALSE 1160.830732 1149.446739 919.3965338 1126.125724 1274.721774 1379.131343 1241.260729 1420.51393 1246.652352 1380.132129 0.841101158 0.832852678 0.66616559 0.815955009 0.923622998 0.999274862 0.899378185 1.029259374 0.903284784 1 10.43059068 -6.776656686 3.340285746 0.96331679 0.77950437 0.673456454 0.058849614 0.139445027 3.245627108 0.018524288 0.022742523 1.67E-07 6.776656686 -0.18381242 TS(ph)DANETEDHLESLICK ddPTM_K562_Paclitaxel_30min_R1 1 TSDANETEDHLESLICK 17 0 F2Z2T1;Q09161 F2Z2T1 NCBP1 Nuclear cap-binding protein subunit 1 1 T(0.426)S(0.524)DANET(0.05)EDHLESLICK 71.894 0.021091 9811700 2284.5 1854.4 4333.9 2823.3 1953.6 1887.3 1669.3 2368 2039.2 3483.2 TRUE FALSE 2316.490048 2056.869663 3239.753344 2642.226175 2219.713395 2221.986156 1986.040961 2166.823619 2235.074271 2773.321928 0.835276289 0.741662784 1.168185096 0.952729702 0.800380718 0.801200226 0.716123484 0.781309807 0.805919518 1 11.43739938 -6.768162068 24.09114987 0.800671704 0.928814969 0.147129822 0.122036209 170.1742163 609828.1117 0.038604429 0.044809328 1.71E-07 6.768162068 0.128143266 TS(ph)PDPSPVSAAPSK ddPTM_K562_Paclitaxel_30min_R1 2 TSPDPSPVSAAPSK 14 0 Q13469-3;Q13469-4;Q13469-2;Q13469;Q13469-5 Q13469-3 NFATC2 "Nuclear factor of activated T-cells, cytoplasmic 2" 1 T(0.322)S(0.678)PDPSPVSAAPSK;T(0.414)S(0.586)PDPSPVSAAPSK 154.13 0.0001157 52403000 5644.8 4442.8 9980.8 5739.8 4308 3831.5 3652.1 5556.9 5503.7 7786.2 TRUE FALSE 5723.844616 4927.879929 7461.023599 5371.674918 4894.822535 4510.962728 4345.06691 5084.80666 6032.354976 6199.368166 0.923294836 0.794900351 1.203513552 0.866487483 0.789567969 0.727648787 0.70088867 0.820213693 0.973059643 1 12.59790547 -4.894046555 16.96683158 0.866333886 4.498547582 0.006804338 0.142364206 727.0671878 117538.4909 0.036421145 967.2769245 1.28E-05 4.894046555 3.632213696 TS(ph)PSGGTWSSVVSGVPR ddPTM_K562_Paclitaxel_30min_R1 1 TSPSGGTWSSVVSGVPR 17 0 Q99700;Q99700-4;Q99700-2;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;A0A5F9ZHH4;A0A5F9ZHX3 Q99700 ATXN2 Ataxin-2 1 T(0.174)S(0.826)PSGGTWSSVVSGVPR 132.15 2.46E-07 48930000 2146.6 1810.6 2708.1 2329.7 2127.7 1840.6 1828.2 2259.3 2063.3 2697.8 TRUE FALSE 2176.659023 2008.287431 2024.406662 2180.283469 2417.528762 2167.004567 2175.091406 2067.358363 2261.489184 2147.986879 1.013348379 0.934962616 0.942466959 1.015035748 1.125485815 1.008853726 1.012618572 0.962463218 1.052841247 1 11.06876947 -6.352423101 5.93095037 1.027306738 0.961019972 0.290761811 0.044296676 0.28908112 15.1935471 0.013091148 0.01959293 4.44E-07 6.352423101 -0.066286766 TS(ph)PTPPESATTVK ddPTM_K562_Paclitaxel_30min_R1 1 TSPTPPESATTVK 13 0 Q5M775;Q5M775-4;J3KSG2 Q5M775 SPECC1 Cytospin-B 1 T(0.141)S(0.859)PTPPESATTVK 162.93 0.00071228 21942000 1818.4 1112.8 2988.9 1913.1 1260.3 1382.9 1145.2 2020 1220.6 2278 TRUE FALSE 1843.86321 1234.299267 2234.315229 1790.402329 1431.974197 1628.137898 1362.495722 1848.388392 1337.844084 1813.74235 1.016607023 0.680526243 1.23188127 0.987131568 0.78951357 0.897667686 0.751206875 1.019101965 0.737615287 1 10.82475381 -6.739971077 24.80503003 0.862664627 0.975774752 0.116436934 0.152488886 504.4932588 582901.5172 0.043898118 0.056616684 1.82E-07 6.739971077 0.113110125 TS(ph)PTVATQTGASATSTR ddPTM_K562_Paclitaxel_30min_R1 1 TSPTVATQTGASATSTR 17 0 Q6P1L5-2;Q6P1L5 Q6P1L5-2 FAM117B Protein FAM117B 1 T(0.217)S(0.783)PTVATQTGASATSTR 142.74 1.22E-08 13298000 816.74 1027 1637.4 1296.5 948.74 1025.1 1017 1294.2 1050.3 1393.4 TRUE FALSE 828.1768799 1139.131333 1224.018119 1213.348293 1077.97445 1206.887092 1209.970441 1184.249632 1151.186008 1109.424315 0.746492454 1.026776967 1.103291231 1.093673788 0.971652086 1.087849865 1.090629099 1.067445175 1.037642669 1 10.11559553 -5.267007837 4.029590998 1.059942405 0.720418503 0.836048124 0.040902831 0.082029618 2.842592017 0.010237439 0.080762429 5.41E-06 5.267007837 -0.339523902 TS(ph)PYILR ddPTM_K562_Paclitaxel_30min_R1 1 TSPYILR 7 0 P49454 P49454 CENPF Centromere protein F 1 T(0.204)S(0.796)PYILR 101.72 0.0094455 10695000 2261.6 1768.9 3306.7 2593.9 2302.4 2230.4 2277.2 2544.4 1621.5 3181.3 TRUE FALSE 2293.269378 1962.034484 2471.882688 2427.538864 2616.02586 2625.930124 2709.286812 2328.237338 1777.25232 2532.949314 0.905375155 0.774604716 0.975891099 0.958384304 1.032798345 1.036708516 1.06961746 0.91918039 0.70165333 1 11.30660249 -5.77828557 24.88942537 0.967835358 0.839989941 0.186434008 0.101134922 327.7710379 484266.7393 0.02774966 0.058013521 1.67E-06 5.77828557 -0.127845417 TS(ph)SFHLLR ddPTM_K562_Paclitaxel_30min_R1 1 TSSFHLLR 8 0 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 T(0.001)S(0.499)S(0.499)FHLLR 91.584 0.011336 5196100 3699.4 2896.6 4231.7 3219 2474.2 3817.7 2518.8 3815.5 2123.5 4206.9 TRUE FALSE 3751.203014 3212.860584 3163.354998 3012.547748 2811.227929 4494.715492 2996.729151 3491.349459 2327.471663 3349.531471 1.119918725 0.959197014 0.94441716 0.899393773 0.839289899 1.341893794 0.894671143 1.04233965 0.694864844 1 11.70974359 TS(ph)SNNNS(ph)MVSNT(ph)LAKMR ddPTM_K562_Paclitaxel_30min_R1 2 TSSNNNSMVSNTLAKMR 17 1 A0A0C4DG07;O60934 A0A0C4DG07 NBN Nibrin 3 T(0.353)S(0.513)S(0.143)NNNS(0.991)MVS(0.009)NT(0.991)LAKMR;T(0.375)S(0.492)S(0.144)NNNS(0.988)MVS(0.024)NT(0.976)LAKMR 74.214 0.0089026 82888000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 TS(ph)SPNRLVY(ph)REQHR ddPTM_K562_Paclitaxel_30min_R1 1 TSSPNRLVYREQHR 14 2 O95714 O95714 HERC2 E3 ubiquitin-protein ligase HERC2 2 T(0.055)S(0.937)S(0.01)PNRLVY(0.998)REQHR 58.32 0.029273 0 1163.8 1206.1 1234.6 1427.7 1544.3 1316.7 1221.3 1220.6 1199.8 1426.9 TRUE FALSE 1180.096791 1337.786077 922.9099607 1336.133712 1754.659805 1550.198258 1453.035299 1116.902411 1315.046151 1136.096997 1.038728906 1.177528046 0.812351378 1.176073624 1.544463026 1.364494636 1.278971165 0.9831048 1.157512215 1 10.1498703 -5.261051197 19.12922472 1.176342345 1.038728899 0.03440855 0.195634773 5.38787276 262075.0731 0.053203589 0.301582413 5.48E-06 5.261051197 -0.137613447 TSADAQEPAS(ph)PVVSPQQS(ph)PPT(ph)SPHTWR ddPTM_K562_Paclitaxel_30min_R1 1 TSADAQEPASPVVSPQQSPPTSPHTWR 27 0 Q96D71-3;Q96D71;E9PMG1;H0YDT0;Q96D71-4;Q96D71-2;F2Z3L2 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 3 T(0.043)S(0.05)ADAQEPAS(0.903)PVVS(0.004)PQQS(0.972)PPT(0.483)S(0.415)PHT(0.129)WR 96.751 5.39E-07 10969000 986.97 1024.8 1292.2 1125.9 936.88 1229.9 889.37 897.14 966.09 1311.9 TRUE FALSE 1000.790625 1136.69113 965.9681283 1053.689813 1064.498918 1448.005496 1058.123315 820.9223572 1058.887261 1044.53406 0.958121581 1.088227922 0.924783753 1.008765395 1.019113649 1.386269296 1.013009872 0.785922057 1.013741248 1 10.02864382 -8.009678636 24.92336461 0.919792165 1.066500594 0.163182704 0.131648616 759.9517438 1956942.089 0.060017439 0.037859047 9.78E-09 8.009678636 0.146708429 TSADAQEPASPVVSPQQS(ph)PPT(ph)SPHTWR ddPTM_K562_Paclitaxel_30min_R1 1 TSADAQEPASPVVSPQQSPPTSPHTWR 27 0 Q96D71-3;Q96D71;E9PMG1;H0YDT0;Q96D71-4;Q96D71-2;F2Z3L2 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 2 TSADAQEPASPVVS(0.045)PQQS(0.859)PPT(0.46)S(0.462)PHT(0.174)WR 68.97 0.0013184 6511800 971.65 807.29 1199.6 989.65 741.37 708.96 890.56 988.24 702.06 909.59 TRUE FALSE 985.2560978 895.4326523 896.7461435 926.1782785 842.3571455 834.6841017 1059.539111 904.2828436 769.4959999 724.2150587 1.360446853 1.236418163 1.238231838 1.278871887 1.163131221 1.152536241 1.463017233 1.248638554 1.062524164 1 9.500274365 -8.813501139 3.887203829 1.007996621 1.266164448 0.554746894 0.085622661 0.166608535 4.790568864 0.082310438 0.02246045 1.54E-09 8.813501139 0.258167826 TSADAQEPASPVVSPQQS(ph)PPTS(ph)PHTWRK ddPTM_K562_Paclitaxel_30min_R1 1 TSADAQEPASPVVSPQQSPPTSPHTWRK 28 1 Q96D71-3;Q96D71;E9PMG1;H0YDT0;Q96D71-4;Q96D71-2;F2Z3L2 Q96D71-3 REPS1 RalBP1-associated Eps domain-containing protein 1 2 T(0.001)S(0.002)ADAQEPAS(0.234)PVVS(0.276)PQQS(0.476)PPT(0.093)S(0.866)PHT(0.052)WRK 57.811 0.0083265 16454000 471.61 521.21 1190.4 488.78 363.26 439.41 236.48 563.01 602.74 645.59 TRUE FALSE 478.213995 578.1174704 889.8687973 457.4318385 412.742162 517.3331939 281.3508455 515.1787863 660.6358701 514.0184036 0.930344112 1.124701891 1.731200266 0.889913348 0.802971565 1.006448777 0.547355588 1.002257473 1.285237776 1 9.005676204 TSAVSS(ph)PLLDQQR ddPTM_K562_Paclitaxel_30min_R1 4 TSAVSSPLLDQQR 13 0 Q5T200-2;Q5T200;A0A087WX14 Q5T200-2 ZC3H13 Zinc finger CCCH domain-containing protein 13 1 T(0.011)SAVS(0.067)S(0.921)PLLDQQR;TSAVS(0.017)S(0.983)PLLDQQR;TSAVS(0.078)S(0.922)PLLDQQR;TSAVS(0.225)S(0.775)PLLDQQR 225.79 2.16E-23 736839000 11423.3 11157.1 15610.4 13052.3 10258 10107 9658.7 12504.1 11333.8 14167.1 TRUE FALSE 11583.26144 12375.26991 11669.36145 12215.1839 11655.31327 11899.33454 11491.3879 11441.79866 12422.46213 11279.83724 1.026899697 1.097114226 1.034532786 1.082921999 1.033287362 1.054920766 1.018754762 1.014358489 1.101297994 1 13.46145863 -6.794421261 24.99887612 1.037794597 1.06114668 0.111238852 0.032148851 422.3882532 320150.4911 0.009451856 0.010718086 1.61E-07 6.794421261 0.023352083 TSCS(ph)PQKAQEANK ddPTM_K562_Paclitaxel_30min_R1 1 TSCSPQKAQEANK 13 1 Q8IY33-4;Q8IY33-2;Q8IY33;Q8IY33-5 Q8IY33-4 MICALL2 MICAL-like protein 2 1 T(0.199)S(0.071)CS(0.73)PQKAQEANK 74.966 0.030454 13209000 2017.2 1016.6 4666.1 2079.1 1405.5 1417.4 1012.8 1619.5 2260.4 2503.4 TRUE FALSE 2045.447024 1127.595826 3488.085345 1945.755832 1596.952895 1668.755989 1204.973513 1481.913366 2477.52152 1993.205706 1.026209697 0.565719746 1.749987638 0.976194191 0.801198236 0.837222161 0.604540469 0.743482402 1.242983357 1 10.96087489 -6.522191046 24.98971405 0.847768924 1.109804367 0.106176359 0.310569692 53.53104247 1945267.34 0.09220531 0.120496769 3.00E-07 6.522191046 0.262035442 TSDIFGS(ph)PVTATSR ddPTM_K562_Paclitaxel_30min_R1 4 TSDIFGSPVTATSR 14 0 A6NGP5;Q9H910;Q9H910-3;H3BU16;Q9H910-2;H3BMV3;H3BMT0;H3BTV5 A6NGP5 HN1L Hematological and neurological expressed 1-like protein 1 TSDIFGS(0.991)PVT(0.007)ATS(0.001)R;T(0.007)S(0.185)DIFGS(0.805)PVT(0.002)ATSR;T(0.247)S(0.077)DIFGS(0.675)PVT(0.001)ATSR;T(0.014)SDIFGS(0.986)PVTATSR 247.11 1.83E-58 897082000 11068.36 10259.62 14356.4 12165.68 9529.19 8931.7 8973.7 10828.09 11025.5 11671.08 TRUE FALSE 11223.35119 11379.80001 10731.94926 11385.42774 10827.22701 10515.61159 10676.41273 9908.176168 12084.54854 9292.50749 1.207785003 1.224621021 1.154903483 1.225226641 1.165156662 1.131622611 1.148926997 1.066254311 1.300461533 1 13.18185223 -7.001855354 4.004763055 1.135422156 1.201202635 0.179852788 0.073433233 0.412777583 15.23704795 0.022786793 0.024604265 9.96E-08 7.001855354 0.065780479 TSDS(ph)PWFLSGSETLGR ddPTM_K562_Paclitaxel_30min_R1 2 TSDSPWFLSGSETLGR 16 0 E7EMW7;O95071-2;O95071 E7EMW7 UBR5 E3 ubiquitin-protein ligase UBR5 1 T(0.066)S(0.217)DS(0.716)PWFLSGSETLGR;T(0.017)S(0.256)DS(0.727)PWFLSGSETLGR 109.48 0.0012045 15259600 1555.53 1198.52 1622.44 1288.81 1291.91 1055.42 914.43 1539.65 1568.38 1590.74 TRUE FALSE 1577.312219 1329.378467 1212.834956 1206.151495 1467.890014 1242.583918 1087.938319 1408.847122 1719.029907 1266.546315 1.245364817 1.049609044 0.957592266 0.952315348 1.158970657 0.981080521 0.858980288 1.112353418 1.357257833 1 10.30668412 -8.522281624 24.99999191 1.197354511 1.024380009 0.174549048 0.130762815 33.52166434 1403844.539 0.084516553 0.032744318 3.00E-09 8.522281624 -0.172974502 TSDS(ph)TPDPQRVPLR ddPTM_K562_Paclitaxel_30min_R1 1 TSDSTPDPQRVPLR 14 1 P52948-6;P52948-2;P52948-5;P52948;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 T(0.001)S(0.001)DS(0.499)T(0.499)PDPQRVPLR 77.42 0.025834 54373000 1790.7 1634.3 2677.9 2169.2 1960.9 1673.9 1321 1943.9 1465.3 2678.9 TRUE FALSE 1815.775325 1812.738401 2001.831025 2030.077221 2228.007778 1970.742662 1571.652854 1778.753562 1606.048612 2132.93871 0.851302157 0.849878336 0.938531903 0.951774757 1.044571871 0.923956536 0.736848577 0.833944995 0.752974572 1 11.05862679 -7.663108379 9.458756757 0.81727006 0.930697099 0.230777012 0.084019463 0.387555384 33.87253207 0.032353454 0.025026767 2.17E-08 7.663108379 0.113427039 TSDST(ph)PDPQRVPLR ddPTM_K562_Paclitaxel_30min_R1 1 TSDSTPDPQRVPLR 14 1 P52948-6;P52948-2;P52948-5;P52948;H7C3P6 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 TSDS(0.005)T(0.995)PDPQRVPLR 104.16 0.027609 46853000 2456.4 2415.6 3011.8 3026.9 2352.3 2092.7 2074.8 2821.1 1688.9 2979.9 TRUE FALSE 2490.797179 2679.343377 2251.433841 2832.768182 2672.723085 2463.810962 2468.482469 2581.429946 1851.126391 2372.594744 1.049819901 1.129288254 0.948933165 1.193953661 1.126497937 1.038445764 1.040414708 1.088019752 0.780211789 1 11.21224998 -8.740926236 24.99936182 0.890105899 1.077455137 0.469454554 0.079438133 168.4128114 205246.0857 0.051272207 0.019329414 1.82E-09 8.740926236 0.187349237 TSELLSGMGVSALEKEEPDSENIPQELLS(ph)NLGHPESPPR ddPTM_K562_Paclitaxel_30min_R1 1 TSELLSGMGVSALEKEEPDSENIPQELLSNLGHPESPPR 39 1 D6RF40;D6RAG5;D6R9R7;A0A0A0MTL5;Q13309-2;Q13309 D6RF40 SKP2 S-phase kinase-associated protein 2 1 TSELLSGMGVSALEKEEPDSENIPQELLS(0.826)NLGHPES(0.174)PPR 92.956 2.08E-14 32887000 417.61 488.24 763.41 561.14 338.15 296.37 292.65 537.31 324.85 678.05 TRUE FALSE 423.4578284 541.5476943 570.6777038 525.150992 384.2117549 348.9270583 348.1788098 491.6621617 356.053294 539.8630378 0.784380109 1.003120526 1.057078673 0.972748559 0.711683757 0.646325149 0.644939152 0.910716473 0.65952523 1 9.076449635 -6.757165693 24.98845035 0.746077493 0.965155957 0.346783411 0.127696914 108.9977048 637310.5065 0.037605893 0.046834315 1.75E-07 6.757165693 0.219078464 TSFSQEQSCDS(ph)AGEGSER ddPTM_K562_Paclitaxel_30min_R1 1 TSFSQEQSCDSAGEGSER 18 0 Q1RLN5;Q8IWW6-3;Q8IWW6-2;Q8IWW6-4;Q8IWW6 Q1RLN5 ARHGAP12 Rho GTPase-activating protein 12 1 TSFSQEQS(0.014)CDS(0.986)AGEGSER 130.09 2.12E-07 5233300 518.36 643.35 947.68 592.4 464.5 475.02 262.1 616.08 515.84 691.52 TRUE FALSE 525.6186393 713.5931287 708.4264632 554.4061155 527.772764 559.2581274 311.8321067 563.7401585 565.3887368 550.5878444 0.954649916 1.296056816 1.286672909 1.006934899 0.958562325 1.01574732 0.566362134 1.023887767 1.026881982 1 9.104828949 -6.471562665 3.739721053 0.921379569 1.189765443 0.332572121 0.155307333 0.257057279 7.286754448 0.046814796 0.069044709 3.38E-07 6.471562665 0.268385874 TSFSVGS(ph)DDELGPIR ddPTM_K562_Paclitaxel_30min_R1 3 TSFSVGSDDELGPIR 15 0 Q9NRY4 Q9NRY4 ARHGAP35 Rho GTPase-activating protein 35 1 TSFSVGS(1)DDELGPIR;TSFSVGS(1)DDELGPIR;T(0.001)S(0.005)FS(0.192)VGS(0.802)DDELGPIR 201.3 1.11E-09 294260000 5002.22 5007.55 6360.67 5489.25 4443.93 4226.32 4245.28 4770.71 5150.14 5735.38 TRUE FALSE 5072.266513 5554.291243 4754.840191 5137.194074 5049.268502 4975.798512 5050.799718 4365.408408 5644.833958 4566.506408 1.110754275 1.21631084 1.041242422 1.124972488 1.105718037 1.089629153 1.106053352 0.955962396 1.236138407 1 12.15687514 -8.185962608 0.013504563 6.11E-07 2.169727668 0.135068863 0.076215914 1064.752598 13.15015842 1046.942531 1062.813016 6.52E-09 8.185962608 2.169727057 TSGGDHAPDS(ph)PSGENSPAPQGR ddPTM_K562_Paclitaxel_30min_R1 2 TSGGDHAPDSPSGENSPAPQGR 22 0 E9PL60;E9PII7;H0YDE3;H0YDU2;E9PRI1;Q96NY9 E9PL60 MUS81 Crossover junction endonuclease MUS81 1 TSGGDHAPDS(0.955)PS(0.044)GENSPAPQGR;T(0.002)S(0.001)GGDHAPDS(0.878)PS(0.092)GENS(0.027)PAPQGR 101.86 0.00018604 8371600 1555.66 1585.49 2120.36 1567.13 1296.54 1456.51 1390.53 1736.51 1687.52 1836.2 TRUE FALSE 1577.44404 1758.59916 1585.048894 1466.621296 1473.150699 1714.801598 1654.375808 1588.982637 1849.613836 1461.981432 1.078976795 1.20288748 1.084178539 1.003173682 1.007639814 1.172929806 1.131598372 1.086869232 1.265141811 1 10.51370927 -7.285958925 24.96455326 1.136755325 1.078933795 0.104490155 0.08076099 1906.144419 1940732.233 0.028993994 0.025584025 5.18E-08 7.285958925 -0.05782153 TSGSVY(ph)IT(ph)LK ddPTM_K562_Paclitaxel_30min_R1 1 TSGSVYITLK 10 0 H0YLA2;P37108 H0YLA2 SRP14 Signal recognition particle 14 kDa protein 2 T(0.003)S(0.003)GS(0.004)VY(0.991)IT(1)LK 60.518 0.025818 0 2110.2 1901.5 2460.5 2615.3 2103.1 1725.7 1994 2354.4 2234.8 2426.3 TRUE FALSE 2139.749311 2109.1122 1839.316344 2447.566364 2389.577826 2031.728665 2372.351091 2154.379024 2449.462525 1931.818728 1.107634624 1.091775419 0.952116426 1.266975171 1.236957584 1.05171807 1.228040217 1.11520765 1.267956713 1 10.91574401 -6.263727629 24.99996258 1.17218707 1.054635486 0.242820546 0.093582946 280.3743063 3063199.427 0.025030791 0.039186541 5.45E-07 6.263727629 -0.117551584 TSLAEDSCLGRHS(ph)PVPR ddPTM_K562_Paclitaxel_30min_R1 2 TSLAEDSCLGRHSPVPR 17 1 Q13469-3;Q13469-4;Q13469-2;Q13469;Q13469-5 Q13469-3 NFATC2 "Nuclear factor of activated T-cells, cytoplasmic 2" 1 TSLAEDS(0.002)CLGRHS(0.998)PVPR;TSLAEDSCLGRHS(1)PVPR 90.707 0.0042192 198359000 3083.2 2971.8 4483.8 4047.4 3190.1 2897.1 2936.5 3913.7 2036.32 4082.6 TRUE FALSE 3126.374312 3296.271174 3351.809235 3787.817879 3624.645629 3410.860008 3493.685545 3581.206756 2231.917635 3250.563879 0.961794454 1.014061343 1.031147013 1.165280247 1.11508211 1.04931333 1.07479369 1.101718622 0.686624757 1 11.66647429 -8.740259476 24.99996928 0.843312258 1.066308374 0.500681266 0.088193175 158.5312855 187125.6781 0.057768803 0.021786995 1.82E-09 8.740259476 0.222996117 TSLAEDSCLGRHS(ph)PVPRPASR ddPTM_K562_Paclitaxel_30min_R1 2 TSLAEDSCLGRHSPVPRPASR 21 2 Q13469-3;Q13469-4;Q13469-2;Q13469;Q13469-5 Q13469-3 NFATC2 "Nuclear factor of activated T-cells, cytoplasmic 2" 1 TSLAEDSCLGRHS(0.906)PVPRPAS(0.094)R;TSLAEDS(0.003)CLGRHS(0.978)PVPRPAS(0.019)R 53.554 0.020895 303930000 1917.68 1796.56 3161.6 2758.7 2201.7 1845.14 1681.05 1997.58 1561.21 1878.41 TRUE FALSE 1944.533437 1992.714496 2363.414978 2581.769329 2501.608815 2172.349672 2000.020462 1827.87311 1711.171196 1495.589011 1.300179008 1.332394449 1.580256983 1.726255884 1.672657927 1.452504435 1.337279458 1.222176077 1.144145339 1 10.54649806 -8.299451577 1.228849664 1.046539479 1.525218507 0.662078706 0.128178089 0.336431556 0.893253269 0.128074993 0.048375881 5.02E-09 8.299451577 0.478679029 TSLMSAES(ph)PTPR ddPTM_K562_Paclitaxel_30min_R1 1 TSLMSAESPTPR 12 0 E5RHT1;B1AP22;P49810-2;P49810-3;P49810 E5RHT1 PSEN2 Presenilin;Presenilin-2;Presenilin-2 NTF subunit;Presenilin-2 CTF subunit 1 TSLMS(0.005)AES(0.799)PT(0.195)PR 124.48 0.0017179 23192000 1191.1 984.62 1811.9 1389.1 1384.1 1392.7 1136.5 1229.8 1122.4 1590.8 TRUE FALSE 1207.779075 1092.124141 1354.463436 1300.009343 1572.637853 1639.675791 1352.144942 1125.320814 1230.211535 1266.594087 0.953564435 0.862252676 1.069374514 1.026381977 1.241627345 1.294555065 1.067544019 0.888462078 0.971275287 1 10.30673853 -5.773935526 23.11859801 1.078436919 0.907908613 0.23585828 0.11582055 122.4326834 226511.1159 0.034456868 0.072702531 1.68E-06 5.773935526 -0.170528306 TSNRY(ph)SPESQAQSVHHQRPGSR ddPTM_K562_Paclitaxel_30min_R1 1 TSNRYSPESQAQSVHHQRPGSR 22 2 O75376-2;O75376;A0A088AWL3;E7EVK1;J3KS29;J3QKP0 O75376-2 NCOR1 Nuclear receptor corepressor 1 1 T(0.055)S(0.055)NRY(0.68)S(0.209)PES(0.001)QAQSVHHQRPGSR 58.635 0.010232 15614000 1054.1 1080.2 1567.5 1378.8 1131.1 995.3 930.75 1236.1 983.17 1204.6 TRUE FALSE 1068.860652 1198.139889 1171.765238 1290.369939 1285.17497 1171.80248 1107.354954 1131.08559 1077.607871 959.1018588 1.114439142 1.24923112 1.221731798 1.345394055 1.339977561 1.221770628 1.154574922 1.179317482 1.123559361 1 9.905540231 -8.839475597 0.821382133 1.004903751 1.253264276 0.579511435 0.0646854 0.45457642 0.68789952 0.066844042 0.025164208 1.45E-09 8.839475597 0.248360524 TSNS(ph)LTEDSK ddPTM_K562_Paclitaxel_30min_R1 1 TSNSLTEDSK 10 0 A6NNK5;Q12888;Q12888-3;Q12888-2;C9JXV0;H7C3N7 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 T(0.001)SNS(0.99)LT(0.006)EDS(0.003)K 105.66 0.0064926 9447300 1572.7 1136.7 2572.4 1834.3 1267.4 1303.9 928.35 1666.6 1208 2160.8 TRUE FALSE 1594.722652 1260.80875 1922.965805 1716.656208 1440.041337 1535.128357 1104.499566 1525.011927 1324.033797 1720.427774 0.926933799 0.73284608 1.11772539 0.997807774 0.837025163 0.892294568 0.641991244 0.886414385 0.769595689 1 10.74855161 -6.86105069 6.877925409 0.823893718 0.940846366 0.143901816 0.123972121 0.412947655 24.69357504 0.038824485 0.04420665 1.38E-07 6.86105069 0.116952648 TSNTLEKDLDLLASVPS(ph)PSSSGSR ddPTM_K562_Paclitaxel_30min_R1 2 TSNTLEKDLDLLASVPSPSSSGSR 24 1 A0A087WV97;Q8WU79-3;Q8WU79-2;Q8WU79 A0A087WV97 SMAP2 Stromal membrane-associated protein 2 1 TSNTLEKDLDLLAS(0.087)VPS(0.827)PS(0.08)S(0.006)SGSR;TSNTLEKDLDLLAS(0.25)VPS(0.709)PS(0.033)S(0.007)S(0.001)GSR 145.21 4.80E-20 324180000 8796.3 7041.2 14330.4 9280.7 7364.6 6571.2 6204.8 9944 10984.7 12287.7 TRUE FALSE 8919.475339 7809.982028 10712.51328 8685.477441 8367.783204 7736.510056 7382.128409 9099.195131 12039.82952 9783.459995 0.911689253 0.79828425 1.094961628 0.88777155 0.855298965 0.790774436 0.754551908 0.930059011 1.230631037 1 13.25612906 -8.603196143 6.566664046 1.11098391 0.871221946 0.471248965 0.102188515 0.188994456 12.38024343 0.072230795 0.026631607 2.49E-09 8.603196143 -0.239761964 TSPADHGGSVGSESGGSAVDSVAGEHSVS(ph)GR ddPTM_K562_Paclitaxel_30min_R1 3 TSPADHGGSVGSESGGSAVDSVAGEHSVSGR 31 0 Q5T4S7-3;Q5T4S7-4;Q5T4S7;Q5T4S7-2;X6RE05;A0A0A0MSW0 Q5T4S7-3 UBR4 E3 ubiquitin-protein ligase UBR4 1 TSPADHGGSVGSESGGSAVDSVAGEHS(0.243)VS(0.756)GR;TSPADHGGSVGSESGGSAVDS(0.007)VAGEHS(0.103)VS(0.89)GR;TSPADHGGSVGSESGGS(0.001)AVDS(0.071)VAGEHS(0.182)VS(0.744)GR 180.54 2.99E-52 48852000 4575 3831.36 5413.5 5111.4 3755.15 4054.06 3935.08 4713.8 3699.22 5109.2 TRUE FALSE 4639.064115 4249.680842 4046.794972 4783.577682 4266.665005 4772.990619 4681.740888 4313.333267 4054.54661 4067.942235 1.140395769 1.044675808 0.994801484 1.175920749 1.048850932 1.17331819 1.150886767 1.060323136 0.996707027 1 11.99008348 -8.60889227 3.845331731 0.999177581 1.101272795 0.35308503 0.05673864 0.273415497 7.578578406 0.045317416 0.015254949 2.46E-09 8.60889227 0.102095214 TSPS(ph)SPAPLPHQEATPR ddPTM_K562_Paclitaxel_30min_R1 2 TSPSSPAPLPHQEATPR 17 0 P04920-2;P04920-3;P04920 P04920-2 SLC4A2 Anion exchange protein 2 1 T(0.001)SPS(0.499)S(0.499)PAPLPHQEATPR;T(0.005)S(0.001)PS(0.497)S(0.497)PAPLPHQEATPR 221.34 1.52E-30 53024000 3967 3165.2 4605.4 3978.1 3458.9 3626.7 3109.9 4083.8 3734.2 4498.9 TRUE FALSE 4022.550239 3510.78724 3442.709811 3722.962471 3930.06074 4269.844324 3699.98729 3736.8557 4092.886595 3582.021711 1.12298321 0.980113334 0.961108025 1.039346708 1.097162736 1.192020783 1.032932681 1.043225307 1.142619148 1 11.80655837 -6.628518958 4.659653205 1.089306409 1.014867564 0.161440816 0.065262752 0.341027865 12.52112662 0.019755263 0.025778902 2.35E-07 6.628518958 -0.074438845 TSPSGGTWSSVVSGVPRLS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 1 TSPSGGTWSSVVSGVPRLSPK 21 1 Q99700;Q99700-4;Q99700-2;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;A0A5F9ZHH4;A0A5F9ZHX3 Q99700 ATXN2 Ataxin-2 1 TSPSGGTWSSVVS(0.001)GVPRLS(0.998)PK 65.023 0.01056 46139000 1686.9 1792.2 2761 1872.4 1633.1 1237.4 1251.9 1820.6 1723 2637.6 TRUE FALSE 1710.521805 1987.878457 2063.951402 1752.312645 1855.555869 1456.835516 1489.44149 1665.928666 1888.501849 2100.055672 0.814512599 0.946583694 0.982807946 0.834412472 0.883574609 0.693712807 0.70923905 0.793278335 0.899262755 1 11.03621186 -6.728554264 2.213417935 0.801923088 0.913673466 0.098342894 0.095735874 0.499700153 5.023420994 0.032009373 0.042001891 1.87E-07 6.728554264 0.111750379 TSPSS(ph)PAPLPHQEATPR ddPTM_K562_Paclitaxel_30min_R1 2 TSPSSPAPLPHQEATPR 17 0 P04920-2;P04920-3;P04920 P04920-2 SLC4A2 Anion exchange protein 2 1 T(0.001)S(0.001)PS(0.124)S(0.873)PAPLPHQEATPR;T(0.003)S(0.003)PS(0.228)S(0.766)PAPLPHQEATPR 169.6 1.49E-08 219658000 1725.71 1763.12 2372.5 2188.49 1521.8 1690.62 1387.71 1817.71 2108.51 2219.18 TRUE FALSE 1749.875264 1955.623404 1773.533032 2048.130047 1729.094924 1990.42772 1651.020728 1663.28419 2311.041807 1766.909898 0.990359082 1.106804261 1.003748428 1.159159304 0.978598245 1.126502105 0.934411387 0.941352013 1.307956795 1 10.78701276 -11.25283176 4.467165997 0.99997436 1.055801488 0.024694256 0.110748276 2.67E-05 4.46E-06 0.101052767 0.024497641 5.59E-12 11.25283176 0.055827128 TSPVTASDPAGPSYAAATLQASSAASS(ph)ASPVSR ddPTM_K562_Paclitaxel_30min_R1 1 TSPVTASDPAGPSYAAATLQASSAASSASPVSR 33 0 M0R1U8;M0QYS5;F5H8D7;P18887 M0R1U8 XRCC1 DNA repair protein XRCC1 1 TSPVTASDPAGPSYAAATLQAS(0.002)S(0.005)AAS(0.168)S(0.456)AS(0.281)PVS(0.089)R 92.424 3.41E-10 17459000 1326.4 1122 1992.2 1185.6 1516.6 1405.4 1345.3 1356.3 949.83 1440.5 TRUE FALSE 1344.973692 1244.503754 1489.244471 1109.560923 1723.186596 1654.627957 1600.563652 1241.073849 1041.065415 1146.925309 1.172677664 1.085078291 1.29846683 0.967422127 1.502440117 1.44266409 1.395525619 1.082087769 0.907701144 1 10.16355573 -8.49032502 5.156705236 0.962671758 1.26446329 0.404531594 0.155014623 0.199798893 14.2574551 0.102492683 0.043944331 3.23E-09 8.49032502 0.301791532 TSPYGSSLDLSTGSSS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 TSPYGSSLDLSTGSSSR 17 0 J3KNZ9 J3KNZ9 FBRS 1 T(0.113)S(0.085)PYGS(0.002)S(0.03)LDLS(0.084)T(0.003)GS(0.007)S(0.019)S(0.656)R 74.428 0.024724 25102000 859.69 689.04 973.18 1053 805.39 867.46 943.54 1139.9 769.15 1200.2 TRUE FALSE 871.7283124 764.2717174 727.4886729 985.4652931 915.0977534 1021.291851 1122.571789 1043.05838 843.0302942 955.5985812 0.91223274 0.799783227 0.761291077 1.031254454 0.957617321 1.068745676 1.174731536 1.091523575 0.882201283 1 9.900260902 -6.273248037 23.73694641 1.037951676 0.821970441 0.566821024 0.081881299 262.846092 528354.7884 0.024261784 0.036355002 5.33E-07 6.273248037 -0.215981234 TSQCSSPSLSASPGSPT(ph)RPQIR ddPTM_K562_Paclitaxel_30min_R1 1 TSQCSSPSLSASPGSPTRPQIR 22 1 H0YMD3;H0YND9;P37275-3;P37275-4;P37275-5;P37275;P37275-2 H0YMD3 ZEB1 Zinc finger E-box-binding homeobox 1 1 TSQCSSPSLSASPGS(0.002)PT(0.998)RPQIR 121.47 9.87E-06 17556000 506.81 536.25 854.31 637.16 420.46 329.64 454.19 591.61 621.9 606.49 TRUE FALSE 513.9069036 594.7995885 638.6288745 596.2954094 477.7337704 388.0970256 540.3701815 541.3490378 681.6362737 482.8870051 1.064238421 1.231757289 1.322522387 1.234854952 0.989328281 0.803701532 1.119040636 1.121067728 1.411585457 1 8.91554183 -6.74506312 24.87880594 1.06889904 1.222457113 0.161265597 0.154714081 433.5119349 658588.1139 0.048905404 0.062940333 1.80E-07 6.74506312 0.153558073 TSQEELLAEVVQGQSRT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 TSQEELLAEVVQGQSRTPR 19 1 A0A087WTC9;G3V5I6;G3V256;H0YJA2;Q6PJT7-10;Q6PJT7-4;Q6PJT7-3;Q6PJT7-11;Q6PJT7-5;Q6PJT7-9;Q6PJT7-2;Q6PJT7 A0A087WTC9 ZC3H14 Zinc finger CCCH domain-containing protein 14 1 TSQEELLAEVVQGQS(0.061)RT(0.939)PR;TSQEELLAEVVQGQS(0.049)RT(0.951)PR 145.72 8.92E-12 41507000 3098.6 3002.8 3804.2 3547.1 3129.45 2715.3 2712.85 3525.3 2594.65 3743 TRUE FALSE 3141.98996 3330.655859 2843.78266 3319.604882 3555.734072 3196.82033 3227.599125 3225.803761 2843.877726 2980.174545 1.054297294 1.117604291 0.954233592 1.113896126 1.193129469 1.07269567 1.08302352 1.082421084 0.954265491 1 11.54118111 -8.752866433 24.32105242 0.977132742 1.084949547 0.357021669 0.057305707 131.572683 373276.8894 0.04146134 0.015097323 1.77E-09 8.752866433 0.107816805 TSQVGAASAPAKES(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 TSQVGAASAPAKESPR 16 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR;TSQVGAASAPAKES(1)PR 267.69 2.17E-94 1653566000 19463.7 15411.8 34858.6 21553.3 17116.4 14674.2 13780.9 19517.2 13300.1 25436.2 TRUE FALSE 19736.25185 17094.51244 26058.1153 20170.96781 19447.94346 17276.46333 16395.75383 17859.09204 14577.63403 20252.28848 0.974519589 0.844078064 1.2866751 0.995984618 0.960283747 0.853062278 0.809575365 0.881830814 0.719801816 1 14.30579732 -7.088332869 2.426619137 0.841178108 1.029843322 0.311269673 0.121293246 0.358929937 4.161958647 0.044156932 0.045566764 8.16E-08 7.088332869 0.188665214 TSQVGAASAPAKES(ph)PRK ddPTM_K562_Paclitaxel_30min_R1 1 TSQVGAASAPAKESPRK 17 2 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 TSQVGAASAPAKES(1)PRK 78.326 0.0089258 22602000 3116.6 2574.7 7543.2 4051 2873.5 2125 2457.5 4036.1 2562 5536 TRUE FALSE 3160.242016 2855.814453 5638.825867 3791.186992 3264.919349 2501.838914 2923.797796 3693.208112 2808.091547 4407.760161 0.716972317 0.647906045 1.279295075 0.860116443 0.740720736 0.567598695 0.663329603 0.83788772 0.637079025 1 12.10583001 TSRDTS(ph)PSSGSAVSSSK ddPTM_K562_Paclitaxel_30min_R1 2 TSRDTSPSSGSAVSSSK 17 1 F8WF16;B7Z8L1;F8W6A0;F8W0Q9;Q8NEY8-5;Q8NEY8-6;Q8NEY8-9;Q8NEY8-8;Q8NEY8-2;Q8NEY8-3;Q8NEY8;Q8NEY8-7 F8WF16 PPHLN1 Periphilin-1 1 T(0.007)S(0.018)RDT(0.357)S(0.61)PS(0.006)S(0.002)GS(0.001)AVSSSK;T(0.028)S(0.028)RDT(0.235)S(0.704)PS(0.003)S(0.001)GS(0.001)AVSSSK 93.416 0.003331 21306700 4507.1 3520.7 6573.9 4023.2 3086.18 2869.13 2711.03 3509.6 5821.8 4235.6 TRUE FALSE 4570.213306 3905.101932 4914.23764 3765.169959 3506.569965 3377.929921 3225.43379 3211.437574 6381.009902 3372.382395 1.355188342 1.157965342 1.457200597 1.116471834 1.039790141 1.001644987 0.956425877 0.952275631 1.892137117 1 11.71955242 -6.304160546 21.66368903 1.117765278 1.30690278 0.086688493 0.270851742 249.0403603 126285.858 0.075839508 0.112491439 4.96E-07 6.304160546 0.189137502 TSRFGGPEMY(ph)GY(ph)PDPS(ph)YLKRVK ddPTM_K562_Paclitaxel_30min_R1 1 TSRFGGPEMYGYPDPSYLKRVK 22 3 Q8TDB6;Q8TDB6-2 Q8TDB6 DTX3L E3 ubiquitin-protein ligase DTX3L 3 T(0.031)S(0.031)RFGGPEMY(0.968)GY(0.968)PDPS(0.56)Y(0.441)LKRVK 50.397 0.015696 13695000 0 0 0 132.39 0 0 73.568 0 0 0 TRUE FALSE 0 0 0 123.899098 0 0 87.52714395 0 0 0 0 TSS(ph)DPNLNNHCQEVR ddPTM_K562_Paclitaxel_30min_R1 2 TSSDPNLNNHCQEVR 15 0 Q9NYA4;J3QR65 Q9NYA4 MTMR4 Myotubularin-related protein 4 1 T(0.001)S(0.003)S(0.996)DPNLNNHCQEVR;T(0.001)S(0.018)S(0.981)DPNLNNHCQEVR 150.12 1.97E-06 15280900 3553.7 3851.9 5669.5 4301 3799.6 3876.2 3019.9 4783 3910.6 5177.3 TRUE FALSE 3603.462764 4272.463468 4238.164606 4025.153111 4317.169848 4563.589645 3592.91026 4376.654295 4286.230603 4122.163418 0.874167858 1.036461449 1.028140851 0.976466166 1.047306817 1.107086057 0.871607914 1.061737212 1.039801233 1 12.00918598 -5.257053727 24.47274103 1.018692755 0.874167779 0.348895563 0.059246926 383.4532109 2139631.378 0.014412455 0.110530506 5.53E-06 5.257053727 -0.144524976 TSS(ph)DPVLLK ddPTM_K562_Paclitaxel_30min_R1 2 TSSDPVLLK 9 0 Q9BRG2;Q9BRG2-2 Q9BRG2 SH2D3A SH2 domain-containing protein 3A 1 T(0.002)S(0.089)S(0.909)DPVLLK;T(0.022)S(0.212)S(0.766)DPVLLK 135.86 0.00083883 19102800 7610.4 6596 12124.8 9184.2 6501.9 5545.3 5381.1 8319.8 5147.7 10567.8 TRUE FALSE 7716.96908 7316.173586 9063.744282 8595.166519 7387.568858 6528.681095 6402.135634 7612.981059 5642.159586 8414.076559 0.917149853 0.869515928 1.077212005 1.021522262 0.878001146 0.775923662 0.760883929 0.904791037 0.67056195 1 13.03858923 -6.96757878 4.965780017 0.813566746 0.970804835 0.33996638 0.097404113 0.208529789 12.85949995 0.030489702 0.033991766 1.08E-07 6.96757878 0.157238089 TSS(ph)EDNLYLAVLR ddPTM_K562_Paclitaxel_30min_R1 3 TSSEDNLYLAVLR 13 0 Q15149-4 Q15149-4 PLEC Plectin 1 T(0.003)S(0.05)S(0.947)EDNLYLAVLR;T(0.202)S(0.018)S(0.781)EDNLYLAVLR;T(0.033)S(0.137)S(0.83)EDNLYLAVLR 219.41 9.54E-17 219935000 9895.9 9065.1 14038.3 11625.6 8811 8705.2 9007.9 10746.5 9084.7 12576.4 TRUE FALSE 10034.47313 10054.85827 10494.15754 10879.98605 10011.20737 10248.94499 10717.102 9833.517747 9957.326027 10013.32278 1.002112221 1.004148023 1.048019501 1.086551017 0.999788741 1.023530872 1.070284284 0.98204342 0.994407775 1 13.28963317 -8.289248829 24.86921156 0.99116919 1.033282394 0.319622806 0.027627757 900.9238102 805665.1107 0.015814533 0.007599725 5.14E-09 8.289248829 0.042113204 TSS(ph)FHLLR ddPTM_K562_Paclitaxel_30min_R1 1 TSSFHLLR 8 0 Q9ULL5;Q9ULL5-2;A0A3Q5ADB5 Q9ULL5 PRR12 Proline-rich protein 12 1 TS(0.203)S(0.797)FHLLR 108.57 0.0075462 6112700 4042.1 3687.7 4874.7 3713.6 3284.2 4294.6 3434.3 3966.8 2758.9 5683.2 TRUE FALSE 4098.701871 4090.335557 3644.021695 3475.426317 3731.563642 5056.187011 4085.940497 3629.79558 3023.904672 4524.96072 0.905798332 0.903949406 0.805315653 0.768056682 0.824662107 1.117399094 0.902978114 0.802171732 0.668272027 1 12.14368955 -12.5637442 2.166170902 3.339366863 0.859421842 0.130073006 0.111750638 3682244.338 365192.5361 42682543.69 0.029928079 2.73E-13 12.5637442 -2.479945021 TSS(ph)FTEQLDEGTPNR ddPTM_K562_Paclitaxel_30min_R1 3 TSSFTEQLDEGTPNR 15 0 E7EVX2;C9JHJ5;Q13439-5;C9J0Y3;Q86W71;Q13439-3;Q13439-4;Q13439 E7EVX2 GOLGA4 Golgin subfamily A member 4 1 T(0.052)S(0.052)S(0.846)FT(0.05)EQLDEGTPNR;TS(0.001)S(0.918)FT(0.081)EQLDEGTPNR;T(0.001)S(0.035)S(0.917)FT(0.047)EQLDEGTPNR 172.91 1.74E-06 51386000 3572.04 3799.19 4568.93 3447.75 3157.17 3015.61 3081.01 4114.7 2640.38 5121.5 TRUE FALSE 3622.059581 4213.998412 3415.447114 3226.626747 3587.230005 3550.386092 3665.615564 3765.130552 2894.000297 4077.735489 0.888252706 1.033416322 0.837584273 0.79127907 0.879711304 0.870675919 0.89893412 0.923338594 0.709707705 1 11.99355248 -5.780265031 24.99761702 0.860629702 0.960834556 0.189467204 0.079964402 315.1881859 418522.5054 0.019883516 0.041499928 1.66E-06 5.780265031 0.100204854 TSS(ph)GTSLSAMHSSGSSGK ddPTM_K562_Paclitaxel_30min_R1 2 TSSGTSLSAMHSSGSSGK 18 0 A6NNK5;Q12888;Q12888-3;Q12888-2;M0R142 A6NNK5 TP53BP1 Tumor suppressor p53-binding protein 1 1 T(0.001)S(0.208)S(0.791)GTSLSAMHSSGSSGK;T(0.119)S(0.119)S(0.612)GT(0.119)S(0.03)LSAMHSSGSSGK 226.22 6.80E-33 50907000 5682.9 4510.5 10528.5 6297.9 4896.8 3978.3 4238.3 5636.6 6239.9 7777.8 TRUE FALSE 5762.478133 5002.971644 7870.44996 5893.980882 5563.827064 4683.795647 5042.4953 5157.735647 6839.270276 6192.680091 0.93053057 0.807884724 1.270927909 0.951765762 0.898452202 0.756343873 0.814267042 0.832876165 1.104412012 1 12.5963482 -6.671956332 4.456818415 0.881044036 1.001515176 0.081296795 0.142316036 0.471718629 16.82818133 0.044072587 0.056997504 2.13E-07 6.671956332 0.120471141 TSS(ph)LDGAAVAVLSR ddPTM_K562_Paclitaxel_30min_R1 2 TSSLDGAAVAVLSR 14 0 D6R9V6;A6NJ38;A6NHM7;Q7Z5H3-4;Q7Z5H3-3;Q7Z5H3;Q7Z5H3-5;Q7Z5H3-2 D6R9V6 ARHGAP22 Rho GTPase-activating protein 22 1 T(0.379)S(0.047)S(0.573)LDGAAVAVLSR;T(0.005)S(0.005)S(0.99)LDGAAVAVLSR 224.34 6.52E-26 149098000 3794.3 3801.4 5066.2 4373.4 3978.2 3583.3 3803.8 4972.8 4184.8 5166.9 TRUE FALSE 3847.431906 4216.449708 3787.175152 4092.909699 4520.098191 4218.747943 4525.551193 4550.329601 4586.768738 4113.882944 0.935231254 1.024931862 0.920584082 0.994901837 1.098742539 1.025490516 1.100068051 1.106091171 1.114948772 1 12.00628503 -6.643295135 4.665318929 1.078167861 0.965443367 0.594892568 0.043040406 0.143205404 5.201497606 0.012540177 0.016312227 2.27E-07 6.643295135 -0.112724495 TSS(ph)LDTLAAPYLAGHWPR ddPTM_K562_Paclitaxel_30min_R1 1 TSSLDTLAAPYLAGHWPR 18 0 Q6P1L5-2;Q6P1L5 Q6P1L5-2 FAM117B Protein FAM117B 1 T(0.246)S(0.246)S(0.341)LDT(0.167)LAAPYLAGHWPR 153.04 1.41E-09 9535700 1488.2 1531.1 1581.3 1871.7 1283.9 1515.2 1308.9 1863 1788.1 1761 TRUE FALSE 1509.039391 1698.270676 1182.081258 1751.657539 1458.788917 1783.899446 1557.256942 1704.726522 1959.854994 1402.107233 1.076265321 1.211227384 0.843074787 1.249303547 1.040426069 1.272298868 1.110654667 1.215831772 1.397792514 1 10.45338098 -7.048653619 1.397964019 1.208404082 1.074925955 0.116700415 0.142318422 0.845927255 3.385775275 0.058353046 0.062894346 8.94E-08 7.048653619 -0.133478127 TSS(ph)LTQFPPSQSEER ddPTM_K562_Paclitaxel_30min_R1 5 TSSLTQFPPSQSEER 15 0 B7Z7F3;Q9H6Z4-3;Q9H6Z4-2;Q9H6Z4 B7Z7F3 RANBP3 Ran-binding protein 3 1 TS(0.003)S(0.879)LT(0.118)QFPPSQSEER;T(0.021)S(0.021)S(0.953)LT(0.005)QFPPSQSEER;T(0.008)S(0.085)S(0.907)LTQFPPSQSEER;T(0.114)S(0.114)S(0.772)LTQFPPSQSEER;T(0.003)S(0.013)S(0.529)LT(0.456)QFPPSQSEER 200.63 1.04E-118 45524100 7350.85 6809.08 8588.35 7290.35 6150.3 6453.58 6001.8 7794.91 7177.55 8787.89 TRUE FALSE 7453.784579 7552.518381 6420.114823 6822.779581 6988.074985 7598.0318 7140.610219 7132.683741 7866.985748 6996.913194 1.065296135 1.079407186 0.917563881 0.975112795 0.998736842 1.085911971 1.020537203 1.019404349 1.124350914 1 12.77250288 -7.231049027 23.9462984 1.049409688 1.004468566 0.135907789 0.053746341 888.1452548 699819.9712 0.01856701 0.018564161 5.87E-08 7.231049027 -0.044941122 TSS(ph)PPS(ph)SPQHSPALR ddPTM_K562_Paclitaxel_30min_R1 1 TSSPPSSPQHSPALR 15 0 Q13029-5;Q13029-3;Q13029-2;Q13029 Q13029-5 PRDM2 PR domain zinc finger protein 2 2 TS(0.053)S(0.946)PPS(0.58)S(0.397)PQHS(0.023)PALR 165.64 0.00019723 5884200 3083.3 2787.5 4447.6 3600.7 2690.9 2696.2 2575.5 3504.7 2028.9 3760.1 TRUE FALSE 3126.475713 3091.848677 3324.748373 3369.767218 3057.446137 3174.333213 3064.18768 3206.953859 2223.78491 2993.789556 1.044320469 1.03275418 1.110548457 1.125585869 1.021262878 1.060306062 1.02351472 1.071202167 0.742799341 1 11.5477571 -8.735912073 24.96241961 0.871399648 1.061415273 0.567798629 0.066232489 124.4594086 121705.9067 0.041801097 0.015786863 1.84E-09 8.735912073 0.190015625 TSS(ph)PPSS(ph)PQHSPALR ddPTM_K562_Paclitaxel_30min_R1 1 TSSPPSSPQHSPALR 15 0 Q13029-5;Q13029-3;Q13029-2;Q13029 Q13029-5 PRDM2 PR domain zinc finger protein 2 2 T(0.05)S(0.096)S(0.854)PPS(0.305)S(0.678)PQHS(0.017)PALR 117.13 2.33E-05 0 2254.8 2335.7 3299.6 2594 2481.1 1999.5 2072.5 2635.9 1905.6 3362.3 TRUE FALSE 2286.374157 2590.719625 2466.575171 2427.63245 2819.067825 2354.083251 2465.746056 2411.963842 2088.641394 2677.061414 0.854061152 0.96774755 0.921374145 0.906827328 1.053045631 0.879353472 0.921064434 0.900974415 0.780199282 1 11.38643452 -10.48971926 6.031873011 0.999999998 0.914833212 0.135802274 0.067319182 26787027.33 23291965.92 0.067561726 0.016206853 3.24E-11 10.48971926 -0.085166786 TSS(ph)PRS(ph)PPSSSEIFTPAHEENVR ddPTM_K562_Paclitaxel_30min_R1 2 TSSPRSPPSSSEIFTPAHEENVR 23 1 I3L3A7;I3L2L5;I3L317;I3L4Q0;C9JLW8 I3L3A7 FAM195B Protein FAM195B 2 T(0.19)S(0.216)S(0.592)PRS(0.316)PPS(0.347)S(0.288)S(0.051)EIFTPAHEENVR;T(0.281)S(0.335)S(0.398)PRS(0.458)PPS(0.383)S(0.12)S(0.026)EIFTPAHEENVR 86.707 0.00045139 32196000 1806.78 1748.79 2708.8 1779.11 1875.72 1947.17 1584.66 1946.37 1904.24 2468.1 TRUE FALSE 1832.080494 1939.728806 2024.929938 1665.005848 2131.22482 2292.47326 1885.340963 1781.01372 2087.15076 1965.099865 0.932309104 0.987089176 1.030446327 0.847288159 1.084537665 1.16659377 0.95941229 0.906322244 1.062109258 1 10.94038692 -5.306582073 3.133173116 1.005084719 0.924765108 0.064276985 0.085497819 1.043225289 16.36897724 0.022925574 0.19366282 4.94E-06 5.306582073 -0.080319611 TSS(ph)TDEVLSLEEKDLR ddPTM_K562_Paclitaxel_30min_R1 1 TSSTDEVLSLEEKDLR 16 1 K7ENH8;A0A0A0MRB7;P15923-2;K7EMM4 K7ENH8 TCF3 Transcription factor E2-alpha 1 T(0.145)S(0.145)S(0.687)T(0.023)DEVLSLEEKDLR 124.99 5.18E-05 19452000 2096.9 1648 3604.1 2462.9 1621.3 1855.9 1529.6 2028.5 1981.1 2766.9 TRUE FALSE 2126.263069 1827.934213 2694.20038 2304.940618 1842.148509 2185.017807 1819.833615 1856.166264 2171.393507 2203.004261 0.96516521 0.829746109 1.222966486 1.04627152 0.836198341 0.991835488 0.82606904 0.842561359 0.98565107 1 11.10525657 -6.748319743 24.97969793 0.905370584 1.017511485 0.171962881 0.109054704 400.9329651 763370.2239 0.033077936 0.042437183 1.79E-07 6.748319743 0.112140901 TSSAVWNS(ph)PPLQGAR ddPTM_K562_Paclitaxel_30min_R1 1 TSSAVWNSPPLQGAR 15 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 T(0.001)S(0.003)S(0.06)AVWNS(0.936)PPLQGAR 108.66 0.0023063 16515000 1025.8 1049.4 1448.1 1183.8 1014 750.62 896.13 1361.4 911.51 1266.3 TRUE FALSE 1040.164365 1163.977041 1082.509245 1107.876366 1152.123967 883.7319178 1066.165989 1245.740572 999.0646082 1008.227365 1.031676387 1.154478723 1.073675723 1.098835843 1.142722373 0.876520464 1.057465832 1.235575046 0.990912014 1 9.977605302 TSSGSSSSSSTPSSQPS(ph)SQGGSQPGSQAGSSER ddPTM_K562_Paclitaxel_30min_R1 1 TSSGSSSSSSTPSSQPSSQGGSQPGSQAGSSER 33 0 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 T(0.093)S(0.026)S(0.02)GS(0.02)S(0.001)S(0.001)S(0.001)S(0.001)S(0.001)T(0.001)PS(0.006)S(0.019)QPS(0.747)S(0.063)QGGSQPGSQAGSSER 109.2 1.58E-14 1361900 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 TSSLES(ph)LNS(ph)NSGVGGTIK ddPTM_K562_Paclitaxel_30min_R1 1 TSSLESLNSNSGVGGTIK 18 0 Q9BX26 Q9BX26 SYCP2 Synaptonemal complex protein 2 2 T(0.092)S(0.092)S(0.093)LES(0.676)LNS(0.796)NS(0.249)GVGGT(0.001)IK 41.482 0.029762 76098000 3282.5 3569.3 2680.3 3265.2 3738.8 3668.2 4169.7 3724.6 2855.3 3232.7 TRUE FALSE 3328.465127 3959.008245 2003.625115 3055.784686 4248.087858 4318.703766 4960.878808 3408.171982 3129.564323 2573.873966 1.293173315 1.538151556 0.778447252 1.18723167 1.650464597 1.677900248 1.927397718 1.324140975 1.215896491 1 11.3297257 -6.746375028 24.31568342 1.515841937 1.193400561 0.146403793 0.301264996 292.9032616 472778.1072 0.091958565 0.11819637 1.79E-07 6.746375028 -0.322441376 TSSPRS(ph)PPSSSEIFTPAHEENVR ddPTM_K562_Paclitaxel_30min_R1 2 TSSPRSPPSSSEIFTPAHEENVR 23 1 I3L3A7;I3L2L5;I3L317;I3L4Q0;C9JLW8 I3L3A7 FAM195B Protein FAM195B 1 T(0.232)S(0.232)S(0.232)PRS(0.292)PPS(0.008)S(0.002)S(0.001)EIFTPAHEENVR;T(0.066)S(0.016)S(0.083)PRS(0.826)PPS(0.007)S(0.002)SEIFTPAHEENVR 138.46 1.65E-15 230755000 1448.98 1228.75 1852.94 1416.31 1434.92 1226.06 1018.07 1646.63 1576.12 1611.4 TRUE FALSE 1469.27019 1362.90908 1385.14238 1325.474216 1630.380397 1443.484526 1211.243468 1506.738504 1727.513368 1282.995795 1.145187066 1.062286474 1.079615682 1.033108776 1.270760515 1.125089054 0.944074386 1.174390835 1.346468456 1 10.32530073 TSSS(ph)S(ph)PANSDVEIDGIGR ddPTM_K562_Paclitaxel_30min_R1 1 TSSSSPANSDVEIDGIGR 18 0 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 2 T(0.009)S(0.011)S(0.153)S(0.788)S(0.554)PANS(0.485)DVEIDGIGR 104.16 0.0059525 21362000 2092.7 2319.5 2793 2585.8 2354.5 2241.1 2127.8 2685.1 2482.1 2986 TRUE FALSE 2122.004257 2572.750854 2087.872607 2419.958362 2675.222762 2638.527618 2531.538942 2456.983995 2720.516795 2377.451561 0.89255415 1.082146487 0.878197748 1.017879145 1.125248062 1.109813408 1.064811996 1.03345281 1.144299568 1 11.21520023 -6.529408036 8.794993617 1.081217858 0.961368199 0.439820165 0.064903199 0.11750617 90.82225124 0.017961929 0.023916834 2.96E-07 6.529408036 -0.11984966 TSSS(ph)SPANS(ph)DVEIDGIGR ddPTM_K562_Paclitaxel_30min_R1 1 TSSSSPANSDVEIDGIGR 18 0 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 2 T(0.009)S(0.009)S(0.071)S(0.628)S(0.286)PANS(0.998)DVEIDGIGR 149.72 6.63E-09 16639000 1876.6 1633.9 2375 2107.8 1625.5 1411.4 1776 1973.5 2032.8 2566.5 TRUE FALSE 1902.87819 1812.294727 1775.401876 1972.615142 1846.92062 1661.691973 2112.986729 1805.838857 2228.059523 2043.445891 0.931210461 0.886881681 0.868827447 0.965337595 0.903826535 0.813181293 1.034031162 0.883722375 1.090344272 1 10.99678833 -8.426187556 1.356217664 1.028931016 0.902283456 0.34568021 0.064792377 0.489284113 1.580204541 0.054217883 0.018939416 3.75E-09 8.426187556 -0.12664756 TSSSS(ph)PANS(ph)DVEIDGIGR ddPTM_K562_Paclitaxel_30min_R1 1 TSSSSPANSDVEIDGIGR 18 0 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 2 T(0.038)S(0.013)S(0.031)S(0.247)S(0.672)PANS(1)DVEIDGIGR 138.28 1.79E-09 18577000 2567.2 2361.5 3402.8 2843.9 2260 2350.3 2612.4 3114.5 2455.2 3375.3 TRUE FALSE 2603.14872 2619.336556 2543.721055 2661.504983 2567.850262 2767.092705 3108.089262 2849.903785 2691.03293 2687.412007 0.968645192 0.97466877 0.946531848 0.990359861 0.955510452 1.029649603 1.156536197 1.060464036 1.001347364 1 11.3920018 -7.417831556 4.719995631 1.063629364 0.968305408 0.486713184 0.042321858 0.184242215 6.546025064 0.015534341 0.013487579 3.82E-08 7.417831556 -0.095323957 TSSSSLQADQASSNAPGPRPS(ph)SGSHRSPAR ddPTM_K562_Paclitaxel_30min_R1 1 TSSSSLQADQASSNAPGPRPSSGSHRSPAR 30 2 Q9ULC8-2;Q9ULC8;Q9ULC8-3 Q9ULC8-2 ZDHHC8 Probable palmitoyltransferase ZDHHC8 1 TSSSSLQADQAS(0.142)S(0.108)NAPGPRPS(0.188)S(0.188)GS(0.188)HRS(0.188)PAR 87.952 4.63E-07 3882400 624.42 727.45 824.14 755.57 520.65 599 579.47 748.81 478.38 780.08 TRUE FALSE 633.1638065 806.8754511 616.0756642 707.111122 591.5713447 705.2242396 689.4214075 685.1939166 524.3305365 621.0992678 1.019424494 1.299108682 0.991911754 1.138483265 0.952458609 1.135445292 1.110001965 1.103195499 0.844197641 1 9.278680057 -8.746447254 24.98064879 0.922098837 1.095916636 0.333135514 0.097107309 217.2359405 361973.4255 0.062556282 0.023438359 1.79E-09 8.746447254 0.173817799 TSSSSLQADQASSNAPGPRPSSGSHRS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 1 TSSSSLQADQASSNAPGPRPSSGSHRSPAR 30 2 Q9ULC8-2;Q9ULC8;Q9ULC8-3 Q9ULC8-2 ZDHHC8 Probable palmitoyltransferase ZDHHC8 1 TSSSSLQADQAS(0.036)S(0.036)NAPGPRPS(0.135)S(0.135)GS(0.135)HRS(0.523)PAR 87.196 5.03E-07 6019500 979.51 749.15 1335.5 1386.3 782.73 770.71 958.95 1028.8 713.11 1032.5 TRUE FALSE 993.226162 830.9447305 998.3365077 1297.388923 889.3510777 907.3845972 1140.905756 941.3970184 781.6074018 822.0759332 1.208192725 1.010788294 1.214409116 1.578186236 1.081835682 1.103772244 1.387835004 1.145146063 0.950772757 1 9.683127848 -8.632914448 4.49902654 0.978567052 1.223668659 0.293920347 0.153233684 0.287827332 9.732720646 0.119548985 0.041109704 2.33E-09 8.632914448 0.245101608 TSSSSPANS(ph)DVEIDGIGR ddPTM_K562_Paclitaxel_30min_R1 1 TSSSSPANSDVEIDGIGR 18 0 O60293-2;O60293 O60293-2 ZFC3H1 Zinc finger C3H1 domain-containing protein 1 TSSS(0.001)S(0.001)PANS(0.998)DVEIDGIGR 190.96 3.65E-100 0 368.06 525.68 492.8 394.42 397.59 296.63 423.91 545.5 563.5 460.99 TRUE FALSE 373.2139756 583.0755201 368.3865451 369.1236666 451.7484893 349.2331656 504.3447095 499.1563701 617.6266928 367.039985 1.01682103 1.588588557 1.003668702 1.005676988 1.230788219 0.951485342 1.374086558 1.359950933 1.682723186 1 8.519793427 -7.874235629 10.44324156 1.386054845 1.146469827 0.173693737 0.231381443 0.552071384 48.47338577 0.094554014 0.063736283 1.34E-08 7.874235629 -0.239585019 TSSTCS(ph)NESLSVGGTSVTPR ddPTM_K562_Paclitaxel_30min_R1 2 TSSTCSNESLSVGGTSVTPR 20 0 A0A3B3IRT3;O60343-2;O60343-3;O60343;Q5JU47 A0A3B3IRT3 TBC1D4 TBC1 domain family member 4 1 TSST(0.004)CS(0.67)NES(0.323)LS(0.003)VGGTSVTPR;TSS(0.001)T(0.002)CS(0.982)NES(0.014)LSVGGTSVTPR 239.13 8.82E-58 35053000 1808.34 1684.13 2176.39 2355.4 1695.78 1634.27 1586.82 1915.49 1381.37 2354.8 TRUE FALSE 1833.662339 1868.009009 1626.933427 2204.335186 1926.773946 1924.084838 1887.910811 1752.757168 1514.056761 1874.890467 0.97801038 0.996329674 0.867748519 1.175714115 1.027672805 1.026238531 1.006944589 0.934858435 0.807544114 1 10.8725906 -8.358564492 3.753899452 0.895706238 1.012923762 0.225899029 0.082744346 0.335635451 8.617300564 0.050480231 0.022218963 4.38E-09 8.358564492 0.117217524 TSSVSSISQVS(ph)PER ddPTM_K562_Paclitaxel_30min_R1 4 TSSVSSISQVSPER 14 0 P42356 P42356 PI4KA Phosphatidylinositol 4-kinase alpha 1 TSSVSSISQVS(1)PER;TSSVSSISQVS(1)PER;TSSVSSISQVS(1)PER;TSSVSSISQVS(1)PER 279.19 2.73E-126 298277000 3811.96 3574.72 4841.55 3944.02 3308.08 3018.75 2957.5 3404.16 3358.95 3989.66 TRUE FALSE 3865.339201 3965.020019 3619.240823 3691.06821 3758.696502 3554.082927 3518.670186 3114.95536 3681.592156 3176.565102 1.216829839 1.248209903 1.139356729 1.161968381 1.183258136 1.118844668 1.107696544 0.980604918 1.158985268 1 11.63325187 -6.57155668 0.230533448 0.987013059 1.3366339 0.624649923 0.049815954 3.786578987 0.315383941 0.097440936 0.387740311 2.68E-07 6.57155668 0.34962084 TST(ph)WWSTVAGCLSVGS(ph)PMY(ph)FR ddPTM_K562_Paclitaxel_30min_R1 1 TSTWWSTVAGCLSVGSPMYFR 21 0 A0A075B6H4;Q9H8E8-2;Q9H8E8 A0A075B6H4 CSRP2BP Cysteine-rich protein 2-binding protein 3 T(0.216)S(0.243)T(0.274)WWS(0.127)T(0.141)VAGCLS(0.205)VGS(0.885)PMY(0.909)FR 50.189 0.025489 41708000 889.67 1107.1 1323.3 924.39 785.74 1088.3 875.67 1153 1639.5 1135.5 TRUE FALSE 902.1281249 1227.976922 989.2165486 865.1037628 892.7710907 1281.294725 1041.823811 1055.045453 1796.9813 904.0844767 0.997836096 1.358254625 1.094163847 0.95688377 0.987486362 1.417228984 1.152352283 1.166976627 1.987625434 1 9.820313773 -8.570245107 24.99951888 1.521643603 1.143783423 0.221868669 0.263290313 158.0672827 83423.64395 0.165969136 0.062730472 2.69E-09 8.570245107 -0.37786018 TSTPS(ph)PQPSKR ddPTM_K562_Paclitaxel_30min_R1 2 TSTPSPQPSKR 11 1 Q8IY18 Q8IY18 SMC5 Structural maintenance of chromosomes protein 5 1 TST(0.003)PS(0.84)PQPS(0.157)KR;TS(0.006)T(0.358)PS(0.629)PQPS(0.008)KR 126.5 0.0031161 2717400 1815.93 1575.44 3018 1718.09 1495.27 1248.58 1145.28 1916.32 1691.33 2146.08 TRUE FALSE 1841.358623 1747.451867 2256.068574 1607.899397 1698.951089 1469.998132 1362.590901 1753.516655 1853.789804 1708.707718 1.077632297 1.022674533 1.320336152 0.941003181 0.994290054 0.860298175 0.797439426 1.026223874 1.084907491 1 10.73868992 -6.378689007 20.84268635 0.949600773 1.128932889 0.384710208 0.105109012 5.995163666 1044.973366 0.030849279 0.045756855 4.18E-07 6.378689007 0.179332117 TSVPS(ph)PEQPQPYR ddPTM_K562_Paclitaxel_30min_R1 2 TSVPSPEQPQPYR 13 0 Q8TEH3 Q8TEH3 DENND1A DENN domain-containing protein 1A 1 T(0.239)S(0.01)VPS(0.751)PEQPQPYR;T(0.064)SVPS(0.936)PEQPQPYR 150.26 5.48E-05 54197000 2953.8 3148 3938.1 3538.8 2730.4 2473 2591.6 3647.8 2885.6 3349.9 TRUE FALSE 2995.162313 3491.709286 2943.877949 3311.837207 3102.326706 2911.551827 3083.342571 3337.896621 3162.774773 2667.188541 1.1229661 1.309134781 1.103738226 1.241695949 1.163144884 1.091618302 1.156027226 1.251466317 1.185808474 1 11.3811041 -10.92745589 4.214173436 0.999994578 1.182165484 0.403468858 0.065863602 46958395.98 162859744.2 4713.200959 0.016008633 1.18E-11 10.92745589 0.182170906 TSVSQNVIPS(ph)SAQK ddPTM_K562_Paclitaxel_30min_R1 1 TSVSQNVIPSSAQK 14 0 H0Y8J2;Q03188;Q03188-2 H0Y8J2 CENPC Centromere protein C 1 TSVSQNVIPS(0.5)S(0.5)AQK 248.81 1.28E-58 9243100 7778.4 4908.9 9319.7 6365.4 4362.5 4626.2 5454.4 7830.7 6117.9 12186 TRUE FALSE 7887.321598 5444.870303 6966.82647 5957.151734 4956.746358 5446.591615 6489.343926 7165.433157 6705.551631 9702.486511 0.812917554 0.561182981 0.718045468 0.613981965 0.510873821 0.56136039 0.668833079 0.738515137 0.691116821 1 13.24413881 -9.464422888 0.869973654 1.000632081 0.62920124 0.608489503 0.085278166 1.051160986 1.295519995 0.086784502 0.028541349 3.43E-10 9.464422888 -0.37143084 TSVSQNVIPS(ph)SAQKR ddPTM_K562_Paclitaxel_30min_R1 1 TSVSQNVIPSSAQKR 15 1 H0Y8J2;Q03188;Q03188-2 H0Y8J2 CENPC Centromere protein C 1 TSVSQNVIPS(0.5)S(0.5)AQKR 106.57 0.0015438 15047000 2618.6 1612 3278.3 2392 1369.2 1840.5 1358.5 2515.8 2770.9 3933.6 TRUE FALSE 2655.268479 1788.003611 2450.652619 2238.587826 1555.708221 2166.886833 1616.268283 2302.067087 3037.057326 3131.930161 0.847805776 0.570895109 0.782473585 0.714763009 0.496725068 0.691869461 0.516061406 0.735031424 0.96970787 1 11.61283633 -8.715417538 3.630195008 0.998265346 0.65660018 0.597308799 0.105068451 0.146980936 3.746173401 0.087638035 0.026532255 1.93E-09 8.715417538 -0.341665166 TSVSQNVIPSS(ph)AQK ddPTM_K562_Paclitaxel_30min_R1 1 TSVSQNVIPSSAQK 14 0 H0Y8J2;Q03188;Q03188-2 H0Y8J2 CENPC Centromere protein C 1 T(0.001)SVS(0.003)QNVIPS(0.218)S(0.778)AQK 126.07 0.00039771 12832000 6464.4 4482.8 7829.8 4797.4 3884.1 3357.9 4598 6809.8 5360.3 10627 TRUE FALSE 6554.921544 4972.247264 5853.070152 4489.716236 4413.180178 3953.376418 5470.446497 6231.264985 5875.180765 8461.211567 0.774702475 0.587651925 0.691753197 0.530623328 0.521577808 0.467235264 0.646532291 0.736450677 0.69436637 1 13.04664854 -9.228500607 0.973439596 0.996956119 0.597060628 0.63331572 0.088791211 0.577552115 1.091811072 0.089955321 0.029737147 5.91E-10 9.228500607 -0.399895491 TSVSQNVIPSS(ph)AQKR ddPTM_K562_Paclitaxel_30min_R1 1 TSVSQNVIPSSAQKR 15 1 H0Y8J2;Q03188;Q03188-2 H0Y8J2 CENPC Centromere protein C 1 TSVSQNVIPS(0.364)S(0.636)AQKR 92.096 0.0066855 14082000 2019.6 1398.8 2486.8 1340.6 1045.7 979.77 1316.4 1862 2656.4 3012.5 TRUE FALSE 2047.880631 1551.525714 1858.976584 1254.619916 1188.142044 1153.518453 1566.180028 1703.811478 2911.559089 2398.550846 0.853799132 0.646859631 0.775041557 0.523074138 0.495358289 0.480923077 0.652969284 0.710350369 1.21388258 1 11.22794731 -8.668987162 5.144621632 1.103236207 0.627592614 0.700373588 0.122063692 0.111697909 4.678685268 0.094798819 0.033129292 2.14E-09 8.668987162 -0.475643593 TT(ph)T(ph)ENMAPIPGSKR ddPTM_K562_Paclitaxel_30min_R1 1 TTTENMAPIPGSKR 14 1 Q5VT06 Q5VT06 CEP350 Centrosome-associated protein 350 2 T(0.628)T(0.686)T(0.686)ENMAPIPGSKR 53.001 0.030069 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 TT(ph)VT(ph)MVGS(ph)FS(ph)PRHSK ddPTM_K562_Paclitaxel_30min_R1 1 TTVTMVGSFSPRHSK 15 1 O60486 O60486 PLXNC1 Plexin-C1 4 T(0.598)T(0.651)VT(0.737)MVGS(0.903)FS(0.991)PRHS(0.12)K 45.614 0.031211 0 0 0 0 0 0 0 76.941 0 0 126.36 TRUE FALSE 0 0 0 0 0 0 91.54015309 0 0 100.6077626 0 0 0 0 0 0 0.909871671 0 0 1 6.652597814 -15 0.218044935 5.443807335 1.67E-23 0.514636559 0.266484129 131.5528488 1.315902047 256.4071846 0.54369419 1.00E-15 15 -5.443807335 TTATPLGDTTFFS(ph)LNMT(ph)T(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 TTATPLGDTTFFSLNMTTR 19 0 Q5T1S8 Q5T1S8 NCMAP Noncompact myelin-associated protein 3 T(0.02)T(0.023)AT(0.127)PLGDT(0.109)T(0.118)FFS(0.855)LNMT(0.815)T(0.933)R 61.096 0.022573 63963000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 TTEEQVQAS(ph)TPCPR ddPTM_K562_Paclitaxel_30min_R1 1 TTEEQVQASTPCPR 14 0 Q14137 Q14137 BOP1 Ribosome biogenesis protein BOP1 1 TTEEQVQAS(0.88)T(0.12)PCPR 190.41 9.59E-07 7992600 2678.6 2716.8 2559.8 2168.9 1532.6 1678.9 2627.3 3078.6 2725.8 3487.8 TRUE FALSE 2716.108664 3013.429412 1913.546831 2029.796462 1741.366067 1976.629342 3125.81646 2817.053714 2987.625269 2776.984446 0.978078458 1.085144505 0.689073658 0.730935481 0.627070875 0.71178985 1.125615401 1.014429058 1.07585236 1 11.43930338 -7.76385301 24.9998791 1.055176649 0.799931947 0.457919965 0.133370332 66.89917003 692910.8936 0.061102 0.043390242 1.72E-08 7.76385301 -0.255244702 TTEEQVQAST(ph)PCPR ddPTM_K562_Paclitaxel_30min_R1 3 TTEEQVQASTPCPR 14 0 Q14137 Q14137 BOP1 Ribosome biogenesis protein BOP1 1 TTEEQVQAS(0.002)T(0.998)PCPR;TTEEQVQAS(0.16)T(0.84)PCPR;TTEEQVQAS(0.012)T(0.988)PCPR 173.03 9.95E-06 41570400 9257.4 8896.8 9284.5 8119.1 6717.8 7466.4 7604.5 9555 10145.8 12410.1 TRUE FALSE 9387.032162 9868.182711 6940.513146 7598.377266 7632.878093 8790.461207 9047.414177 8743.24311 11120.34942 9880.914808 0.950016506 0.998711446 0.70241605 0.768995322 0.772486985 0.889640421 0.915645398 0.884861704 1.125437233 1 13.2704289 -8.668187848 5.652557756 1.060738204 0.854554579 0.450399187 0.089609421 0.191195224 9.048538735 0.069937152 0.02496592 2.15E-09 8.668187848 -0.206183625 TTHLAGALS(ph)PGEAWPFESV ddPTM_K562_Paclitaxel_30min_R1 3 TTHLAGALSPGEAWPFESV 19 0 Q9Y3X0 Q9Y3X0 CCDC9 Coiled-coil domain-containing protein 9 1 TTHLAGALS(1)PGEAWPFESV;TTHLAGALS(1)PGEAWPFESV;TTHLAGALS(0.999)PGEAWPFESV 126.77 1.94E-06 154712300 4918.2 4805.38 5297.6 5356.9 4251.47 3976.42 5060.2 6198.3 5469.6 6737.2 TRUE FALSE 4987.069974 5330.047639 3960.15536 5013.332411 4830.592192 4681.582255 6020.346534 5671.715726 5994.979519 5364.154942 0.92970282 0.993641626 0.738262672 0.934598733 0.900531816 0.872752988 1.122328978 1.057336298 1.117599992 1 12.38913519 -7.757349886 24.99999389 1.079094354 0.8943412 0.618051791 0.069049142 67.40918876 412090.7738 0.026765313 0.019960983 1.75E-08 7.757349886 -0.184753154 TTHLAGALS(ph)PGGGQSAPAFPESGPSLR ddPTM_K562_Paclitaxel_30min_R1 4 TTHLAGALSPGGGQSAPAFPESGPSLR 27 0 A0A2R8Y4Z8 A0A2R8Y4Z8 1 TTHLAGALS(1)PGGGQSAPAFPESGPSLR;TTHLAGALS(0.971)PGGGQS(0.029)APAFPESGPSLR;TTHLAGALS(0.782)PGGGQS(0.215)APAFPES(0.002)GPSLR;T(0.001)THLAGALS(0.999)PGGGQSAPAFPESGPSLR 97.878 7.82E-08 188447000 3131.4 3607.39 5148.12 4438.83 3333.74 3677.08 3325.67 4656.09 3746.78 4722.14 TRUE FALSE 3175.249261 4001.25704 3848.413435 4154.143311 3787.851829 4329.158509 3956.698521 4260.526092 4106.67496 3759.765276 0.844533908 1.064230543 1.02357811 1.104894324 1.007470294 1.151443825 1.052379133 1.133189383 1.092268974 1 11.87642688 -4.595926754 1.381519307 1.079506146 1.76E-12 0.645930793 0.049561662 4.008125009 1.813062306 0.013193688 9.472570156 2.54E-05 4.595926754 -1.079506146 TTIPEEEEEEEEAAGVVVEEELFHQQGT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 12 TTIPEEEEEEEEAAGVVVEEELFHQQGTPR 30 0 P20700 P20700 LMNB1 Lamin-B1 1 TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR;TTIPEEEEEEEEAAGVVVEEELFHQQGT(1)PR 157.16 1.91E-35 2353927000 20183.74 18899.09 24268.17 21043.02 18396.03 17510.61 16910.3 21759.42 19801.59 24497.82 TRUE FALSE 20466.37463 20962.55656 18141.37034 19693.41488 20901.88073 20615.87082 20118.94115 19910.82145 21703.6212 19505.15084 1.049280511 1.074719018 0.930081007 1.009652017 1.071608259 1.056944958 1.031468114 1.020798128 1.112712297 1 14.25156753 -6.742284012 24.94990985 1.049490325 1.013999822 0.114179251 0.044868638 542.3638322 706427.0141 0.013534217 0.017444496 1.81E-07 6.742284012 -0.035490503 TTKS(ph)PSDSGYSYETIGK ddPTM_K562_Paclitaxel_30min_R1 1 TTKSPSDSGYSYETIGK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 T(0.137)T(0.137)KS(0.523)PS(0.187)DS(0.014)GY(0.001)SYETIGK 67.299 0.026359 17903000 1910.3 1400.1 4772.5 2446.8 1511.6 1359 949.19 1925.1 1740.6 2970.1 TRUE FALSE 1937.050094 1552.967653 3567.623349 2289.873199 1717.505512 1599.999569 1129.293847 1761.550739 1907.792407 2364.79199 0.81912071 0.656703701 1.508641506 0.968319078 0.726281854 0.676592096 0.477544686 0.744907267 0.806748507 1 11.20749757 -6.7504834 5.438581157 0.708450062 1.004275726 0.204552043 0.236694964 0.254495589 22.78154491 0.074574536 0.092072758 1.78E-07 6.7504834 0.295825664 TTLARCSEWSSGQRRQK ddPTM_K562_Paclitaxel_30min_R1 1 TTLARCSEWSSGQRRQK 17 3 A0A0U1RQG8 A0A0U1RQG8 0 48.568 0.028396 11257000 1086.9 911.78 983.92 961.89 967.54 1046.6 759.51 1106.5 1179 1256.1 FALSE TRUE 1102.119953 1011.331224 735.517227 900.1986807 1099.335329 1232.199815 903.6230576 1012.495918 1292.248218 1000.106131 1.102002997 1.011223902 0.735439174 0.900103152 1.099218668 1.232069055 0.903527166 1.012388473 1.292111086 1 9.965937391 -6.76517665 24.81552717 1.088296423 0.928069328 0.231035444 0.136045704 134.9221973 895885.9546 0.043390225 0.051106773 1.72E-07 6.76517665 -0.160227095 TTPATGEQS(ph)PGAR ddPTM_K562_Paclitaxel_30min_R1 3 TTPATGEQSPGAR 13 0 O00308-4;O00308-2;O00308 O00308-4 WWP2 NEDD4-like E3 ubiquitin-protein ligase WWP2 1 TTPAT(0.002)GEQS(0.998)PGAR;TTPATGEQS(1)PGAR;TTPATGEQS(1)PGAR 176.19 3.58E-05 51351200 5033.8 4254.8 6124 5528.2 4355.27 4701.1 4073.98 4907.5 4093.4 4964.9 TRUE FALSE 5104.288731 4719.353453 4577.920459 5173.645995 4948.531509 5534.774078 4846.996437 4490.577243 4486.58936 3953.050655 1.291227757 1.193850994 1.158072805 1.308773008 1.25182598 1.400127284 1.226140736 1.135977663 1.134968851 1 11.94875073 -8.753118818 1.324483643 1.013566653 1.261229741 0.615694213 0.065805011 0.292532103 1.037005521 0.065989359 0.020863808 1.77E-09 8.753118818 0.247663088 TTPES(ph)PPYSSGSYDSIK ddPTM_K562_Paclitaxel_30min_R1 1 TTPESPPYSSGSYDSIK 17 0 A0A087X0N3;A0A087WTU5;Q96MY1-2;Q96MY1 A0A087X0N3 NOL4L Nucleolar protein 4-like 1 TT(0.001)PES(0.999)PPYSSGSYDSIK 174.35 1.84E-09 17968000 866.31 603.49 1627.9 960.93 715.68 401.68 888.92 1175.5 741.04 1135.7 TRUE FALSE 878.4410128 669.3810791 1216.916511 899.3002508 813.1677326 472.9123081 1057.58793 1075.633938 812.2202031 904.2437166 0.971464879 0.740266221 1.345783763 0.994533038 0.899279384 0.522992087 1.169582835 1.189539853 0.898231515 1 9.820567858 -10.54862903 7.202177147 1 0.972264645 0.001542583 0.221953349 0 0 0.220899736 0.053576056 2.83E-11 10.54862903 -0.027735355 TTPESPPYS(ph)SGSYDSIKTEVSGCPEDLTVGR ddPTM_K562_Paclitaxel_30min_R1 1 TTPESPPYSSGSYDSIKTEVSGCPEDLTVGR 31 1 A0A087X0N3;A0A087WTU5;Q96MY1-2;Q96MY1 A0A087X0N3 NOL4L Nucleolar protein 4-like 1 T(0.002)T(0.001)PES(0.023)PPY(0.198)S(0.223)S(0.198)GS(0.175)Y(0.156)DS(0.017)IKT(0.006)EVS(0.001)GCPEDLTVGR 54.622 0.002442 22374000 1760.8 1330.5 2896 1919.1 1411.9 1163.4 1227.2 1639.6 1387.3 2101.5 TRUE FALSE 1785.456633 1475.768489 2164.868983 1796.017516 1604.224684 1369.712655 1460.054794 1500.305746 1520.556364 1673.213146 1.067082599 0.881996709 1.293839334 1.073394337 0.958768874 0.818612176 0.87260538 0.896661462 0.908764294 1 10.70840552 -6.887133077 3.742390101 0.890980785 1.080293141 0.408890142 0.101642403 0.228904407 6.094315875 0.033130795 0.038188447 1.30E-07 6.887133077 0.189312356 TTPPPGAQCEVPASPQRPS(ph)RPGALPEQTRPLR ddPTM_K562_Paclitaxel_30min_R1 1 TTPPPGAQCEVPASPQRPSRPGALPEQTRPLR 32 3 D6R9H8;Q9H074 D6R9H8 PAIP1 Polyadenylate-binding protein-interacting protein 1 1 TTPPPGAQCEVPAS(0.35)PQRPS(0.638)RPGALPEQT(0.012)RPLR 51.978 0.0072261 99450000 360.67 343.5 391.15 517.82 460 334.92 364.09 403.76 199.45 322.62 TRUE FALSE 365.7204928 381.0044916 292.3993448 484.6093429 522.6597879 394.3133595 433.1741768 369.4580678 218.6080637 256.8698669 1.423757863 1.483258804 1.138317033 1.886594752 2.034725965 1.535070517 1.686356528 1.438308324 0.851045965 1 8.004893849 -8.659822349 4.165119129 0.92540195 1.599358563 0.55683036 0.23591819 0.173499081 5.245710055 0.200267715 0.066402282 2.19E-09 8.659822349 0.673956614 TTPSYVAFTDTER ddPTM_K562_Paclitaxel_30min_R1 3 TTPSYVAFTDTER 13 0 P11142-2;P11142;E9PKE3;E9PNE6;E9PQQ4;E9PQK7;E9PK54;E9PLF4;P54652;E9PN25;E9PPY6;E9PI65;A0A0G2JIW1;P0DMV8-2;P0DMV9;P0DMV8;P48741;P17066;Q53FA3;P34931 P11142-2;A0A0G2JIW1;P48741;Q53FA3 HSPA8;HSPA2;HSPA1A;HSPA1B;HSPA7;HSPA6;HSPA1L Heat shock cognate 71 kDa protein;Heat shock-related 70 kDa protein 2;Heat shock 70 kDa protein 1A;Heat shock 70 kDa protein 1B;Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 6;Heat shock 70 kDa protein 1-like 0 ;; 187.31 0.0011251 128612000 1848.95 1654.05 2373.35 1973.12 1979.77 1701.09 2209.78 2270.5 1783.89 2353.29 FALSE TRUE 1874.841004 1834.644773 1774.168439 1846.572915 2249.448192 2002.754427 2629.074219 2077.606853 1955.240605 1873.688206 1.000615256 0.979162257 0.946885631 0.985528386 1.200545632 1.06888351 1.403154597 1.108832754 1.043525064 1 10.87166518 -6.748276001 22.20974858 1.152784747 0.97590131 0.349781995 0.105249337 63.41021047 106985.5934 0.031167815 0.039899405 1.79E-07 6.748276001 -0.176883437 TTRT(ph)PEEGGYSYDISEK ddPTM_K562_Paclitaxel_30min_R1 1 TTRTPEEGGYSYDISEK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 T(0.001)TRT(0.999)PEEGGYSYDISEK 131.82 1.07E-06 31475000 1714.1 1358.9 3228.2 1651 1550.2 1288.3 1280.6 1939.3 1508.8 2320.3 TRUE FALSE 1738.102688 1507.269298 2413.200984 1545.11225 1761.363485 1516.761916 1523.587165 1774.54436 1653.726981 1847.421586 0.940826231 0.815877279 1.306253538 0.836361479 0.953417183 0.821015586 0.824710059 0.960551925 0.895154086 1 10.85129742 TTRTPDT(ph)STYCYETAEK ddPTM_K562_Paclitaxel_30min_R1 1 TTRTPDTSTYCYETAEK 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 T(0.046)T(0.01)RT(0.159)PDT(0.749)S(0.037)TYCYETAEK 130.64 1.26E-06 18405000 3053 2722.9 5544.9 2966.8 2642.9 2257.6 2037.4 3131.3 3297 3859.9 TRUE FALSE 3095.751419 3020.19543 4145.021417 2776.522727 3002.907725 2657.953662 2423.986014 2865.27652 3613.691581 3073.250261 1.007321616 0.982736573 1.348741907 0.903448301 0.977111354 0.864867302 0.788736942 0.932327756 1.175853339 1 11.58554954 TTS(ph)LELVPEEPSEPVPPLIVDRER ddPTM_K562_Paclitaxel_30min_R1 1 TTSLELVPEEPSEPVPPLIVDRER 24 1 Q9ULI0-2;Q9ULI0;H7BYF1 Q9ULI0-2 ATAD2B ATPase family AAA domain-containing protein 2B 1 T(0.219)T(0.219)S(0.559)LELVPEEPS(0.004)EPVPPLIVDRER 52.192 0.020969 5211900 116.3 136.28 174.01 263.21 215.22 195.82 0 195.63 126.38 118.13 TRUE FALSE 117.9285588 151.1595113 130.0790234 246.3288887 244.5366077 230.5459276 0 179.0100104 138.5193637 94.05504116 1.253824966 1.607138856 1.383009584 2.61898656 2.599930899 2.451180976 0 1.903247377 1.472747893 1 6.555433366 -7.715996399 24.99999987 1.169254301 1.997785369 0.316783831 0.637552895 178.4001783 98144.6595 0.258394225 0.20015047 1.92E-08 7.715996399 0.828531068 TTS(ph)PPEVSGYSYEK ddPTM_K562_Paclitaxel_30min_R1 1 TTSPPEVSGYSYEK 14 0 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 T(0.386)T(0.084)S(0.529)PPEVSGYSYEK 87.863 0.018109 104250000 3268.7 2429.7 6015.9 4042.4 3069.4 2540.6 2813.9 4054.2 2048.3 5055.2 TRUE FALSE 3314.471885 2694.982863 4497.111641 3783.138557 3487.504245 2991.139738 3347.822835 3709.770404 2245.048367 4024.947465 0.823482024 0.669569699 1.117309401 0.939922469 0.866471991 0.743150007 0.831768083 0.921694118 0.557783272 1 11.97475424 -7.017648099 22.53512881 0.807015009 0.890257775 0.056286602 0.149794415 652.4710372 833151.6909 0.048966187 0.050118802 9.60E-08 7.017648099 0.083242766 TTS(ph)PPEVSGYSYEKTER ddPTM_K562_Paclitaxel_30min_R1 3 TTSPPEVSGYSYEKTER 17 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 T(0.155)T(0.155)S(0.689)PPEVSGYSYEKTER;T(0.075)T(0.061)S(0.864)PPEVSGYSYEKTER;T(0.149)T(0.149)S(0.703)PPEVSGYSYEKTER 136.01 2.84E-07 79602700 5904.3 4726 9355.3 6222.4 4774.7 4799.8 3431.91 6623.4 8111.2 7523.4 TRUE FALSE 5986.978416 5242.000662 6993.43881 5823.323114 5425.094976 5650.977137 4083.097007 6060.700828 8890.317002 5990.12695 0.999474379 0.875106772 1.167494256 0.972153539 0.905672788 0.943381866 0.681637808 1.0117817 1.484161701 1 12.54837086 -8.543063399 23.93562889 1.244045057 0.935428317 0.374114966 0.156689564 148.8049206 176452.113 0.102456952 0.038737598 2.86E-09 8.543063399 -0.30861674 TTS(ph)PSSDTDLLDR ddPTM_K562_Paclitaxel_30min_R1 1 TTSPSSDTDLLDR 13 0 K7ENU0;K7ERZ4;K7EJ43;C9J9G2;Q96QT6-2;Q96QT6-5;Q96QT6-3;Q96QT6 K7ENU0 PHF12 PHD finger protein 12 1 T(0.072)T(0.072)S(0.855)PSSDTDLLDR 214.61 8.02E-16 25725000 1836.5 1958 2748.2 2030.3 1684 1967.4 1714.2 2332.2 1893.2 2429 TRUE FALSE 1862.216666 2171.781062 2054.382921 1900.085645 1913.38931 2316.290766 2039.460501 2134.065053 2075.050319 1933.968467 0.962899188 1.122966118 1.062262884 0.982480158 0.989359105 1.19768797 1.054546926 1.103464244 1.072949407 1 10.91734856 TTS(ph)SSDLTTSSSSSGPR ddPTM_K562_Paclitaxel_30min_R1 1 TTSSSDLTTSSSSSGPR 17 0 Q5QP82;A0A0A0MQT4 Q5QP82 DCAF10 DDB1- and CUL4-associated factor 10 1 T(0.007)T(0.029)S(0.942)S(0.022)S(0.001)DLTTSSSSSGPR 118.21 2.50E-05 0 549.78 613.14 887.65 741.64 578.71 521.08 697.16 655.69 722.74 860.22 TRUE FALSE 557.4786162 680.0846987 663.5517792 694.0745299 657.5400996 613.4862217 829.4424706 599.9850418 792.1624063 684.9066918 0.813948269 0.992959635 0.968820698 1.013385528 0.960043328 0.895722336 1.211029883 0.876009899 1.156599017 1 9.419763646 -4.487224256 1.222912355 1.01078272 1.20E-18 0.25969922 0.09865616 11.71237179 3.712888023 0.027248073 23.68868534 3.26E-05 4.487224256 -1.01078272 TTSPSPEPDRLS(ph)GSSSDSR ddPTM_K562_Paclitaxel_30min_R1 1 TTSPSPEPDRLSGSSSDSR 19 1 Q9NQ75-2;Q9NQ75 Q9NQ75-2 CASS4 Cas scaffolding protein family member 4 1 T(0.011)T(0.011)S(0.148)PS(0.148)PEPDRLS(0.265)GS(0.265)S(0.076)S(0.076)DS(0.001)R 78.244 0.0061328 28792000 2195.8 1893.6 2971.4 2558.1 2319.3 1894.9 1842.6 2388.3 2218 2527.8 TRUE FALSE 2226.547975 2100.349652 2221.23332 2394.034916 2635.227926 2230.933909 2192.223731 2185.399008 2431.04881 2012.632972 1.106286146 1.043583048 1.103645499 1.189503972 1.309343513 1.108465349 1.089231748 1.085840805 1.207894755 1 10.97486839 -11.10769032 15.74979514 0.999999963 1.137088189 0.241410232 0.073470451 0 0 0.077344879 0.018758889 7.80E-12 11.10769032 0.137088226 TTSQAHSLPLS(ph)PASTR ddPTM_K562_Paclitaxel_30min_R1 2 TTSQAHSLPLSPASTR 16 0 P19838-3;P19838;P19838-2 P19838-3 NFKB1 Nuclear factor NF-kappa-B p105 subunit;Nuclear factor NF-kappa-B p50 subunit 1 TTSQAHS(0.001)LPLS(0.795)PAS(0.154)T(0.05)R;TTSQAHS(0.011)LPLS(0.429)PAS(0.429)T(0.131)R 93.255 0.0058114 29954000 4637.7 4322.4 5743.2 5039.9 4374.9 3458.6 3716.4 4328.5 3728.6 4765.6 TRUE FALSE 4702.642109 4794.334249 4293.258129 4716.663372 4970.835448 4071.934149 4421.567499 3960.766907 4086.74869 3794.368104 1.239374246 1.263539572 1.131481715 1.243069529 1.310056197 1.073152113 1.165297456 1.043854154 1.077056463 1 11.88964393 -7.932825629 0.911889971 1.023103373 1.232299353 0.646273563 0.059626185 0.384051117 0.601313762 0.049192533 0.024920578 1.17E-08 7.932825629 0.20919598 TTSSANNPNLMYQDECDRR ddPTM_K562_Paclitaxel_30min_R1 1 TTSSANNPNLMYQDECDRR 19 1 A0A1X7SBZ2;A0A5H1ZRQ2;Q92841;Q92841-1;Q92841-3;Q92841-2 A0A1X7SBZ2 DDX17 Probable ATP-dependent RNA helicase DDX17 0 74.147 0.030553 15732000 827.04 598.17 995.01 1004.8 644.2 830.83 809.18 745.32 958.54 973.9 FALSE TRUE 838.6211116 663.4802235 743.8074194 940.3566253 731.9509464 978.1660351 962.7176808 682.0004139 1050.61205 775.4186454 1.08150754 0.855641307 0.959233343 1.212708297 0.943942928 1.261468293 1.241545695 0.879525425 1.354896553 1 9.598831616 -6.237324319 21.68967664 1.125364289 0.954478538 0.194500577 0.150774964 226.9106918 204085.7962 0.038795683 0.067107739 5.79E-07 6.237324319 -0.170885751 TTTAAGSSHSRPGVPVEGS(ph)PGRNPGV ddPTM_K562_Paclitaxel_30min_R1 2 TTTAAGSSHSRPGVPVEGSPGRNPGV 26 2 Q8NE01-2;Q8NE01 Q8NE01-2 CNNM3 Metal transporter CNNM3 1 TTTAAGSSHSRPGVPVEGS(1)PGRNPGV;TTTAAGSSHSRPGVPVEGS(1)PGRNPGV 72.859 0.00016431 188868000 4498.4 4142.7 5997.3 4925.2 4715.2 4168.5 3835.3 4778.1 4441.5 5631.1 TRUE FALSE 4561.391479 4595.013996 4483.207441 4609.319716 5357.490069 4907.724946 4563.028153 4372.170581 4868.12592 4483.478729 1.017377745 1.024876948 0.999939492 1.028067711 1.194940445 1.09462434 1.017742791 0.975173709 1.08579213 1 12.13040284 -6.540551645 24.99898419 1.064334948 1.014955492 0.124570406 0.057467363 528.4297685 747480.0436 0.018435241 0.023805168 2.88E-07 6.540551645 -0.049379457 TTTASLVCQELGYS(ph)Y(ph)VELNAS(ph)DT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 TTTASLVCQELGYSYVELNASDTR 24 0 P35251;P35251-2 P35251 RFC1 Replication factor C subunit 1 4 T(0.008)T(0.008)T(0.008)AS(0.007)LVCQELGY(0.051)S(0.954)Y(0.981)VELNAS(0.991)DT(0.991)R 42.181 0.023969 253960000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 TTWGDGGENS(ph)PCNVVSK ddPTM_K562_Paclitaxel_30min_R1 3 TTWGDGGENSPCNVVSK 17 0 H3BM38;O00161;H3BV99;H3BP15;H3BQY9 H3BM38 SNAP23 Synaptosomal-associated protein;Synaptosomal-associated protein 23 1 TTWGDGGENS(1)PCNVVSK;TTWGDGGENS(1)PCNVVSK;TTWGDGGENS(1)PCNVVSK 230.67 7.25E-40 124555000 6848.8 6038.5 12011.3 7854.7 5606.9 4982 4616.9 7528 5703 9010 TRUE FALSE 6944.70433 6697.803851 8978.898761 7350.934698 6370.654706 5865.487749 5492.932673 6888.449412 6250.798632 7173.757054 0.968070744 0.933653565 1.251631285 1.024698027 0.888049966 0.817631222 0.765698173 0.960228979 0.871342392 1 12.80851317 -6.745957986 4.667439156 0.871408384 1.053924062 0.381841169 0.099834906 0.196791316 10.62223274 0.031579661 0.039197181 1.79E-07 6.745957986 0.182515679 TVAEQDMKMNDMLDR ddPTM_K562_Paclitaxel_30min_R1 1 TVAEQDMKMNDMLDR 15 1 H0YFP6;Q8TBY8-4;Q8TBY8;Q8TBY8-1 H0YFP6 PMFBP1 Polyamine-modulated factor 1-binding protein 1 0 46.73 0.031158 0 68.799 162.88 152.31 121.14 58.726 50.06 160.79 59.192 227.64 173.26 FALSE TRUE 69.76239826 180.6637892 113.8574568 113.3706226 66.72547544 58.93743812 191.2990631 54.16327014 249.5058391 137.9495169 0.505709624 1.309636984 0.825355966 0.821826891 0.483694883 0.427239177 1.386732389 0.392631097 1.808674976 1 7.107996594 -7.765010054 24.99996807 1.096395474 0.752768436 0.196869576 0.406910677 189.4146888 1326157.915 0.16128194 0.113602448 1.72E-08 7.765010054 -0.343627038 TVAISDAAQLPHDY(ph)CTTPGGTLFSTTPGGTR ddPTM_K562_Paclitaxel_30min_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 1 TVAISDAAQLPHDY(0.772)CT(0.017)T(0.017)PGGT(0.042)LFS(0.028)T(0.028)T(0.086)PGGT(0.011)R 75.939 0.00012493 178960000 1244 1631 2107.6 2138 1457.1 1504.1 1248.6 1576.1 1203.4 1945.9 TRUE FALSE 1261.419838 1809.078096 1575.510314 2000.878249 1655.581689 1770.831016 1485.515332 1442.200467 1318.991947 1549.324512 0.814174066 1.167656022 1.016901431 1.291452006 1.068582906 1.142969728 0.958814839 0.930857581 0.851333557 1 10.59742364 -7.880535127 5.098069883 0.923330535 1.092790341 0.269594225 0.11955767 0.263793918 10.65298441 0.050034047 0.033358363 1.32E-08 7.880535127 0.169459806 TVAISDAAQLPHDYCT(ph)TPGGT(ph)LFSTTPGGTRIIYDRK ddPTM_K562_Paclitaxel_30min_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTRIIYDRK 37 2 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 TVAISDAAQLPHDY(0.033)CT(0.462)T(0.462)PGGT(0.259)LFS(0.259)T(0.259)T(0.259)PGGT(0.003)RIIY(0.003)DRK 66.124 3.74E-06 408210000 2118.9 1740.2 3192.6 2132.9 1490 1540.5 1853 2424.9 3171.7 2597.1 TRUE FALSE 2148.571137 1930.200921 2386.588644 1996.105341 1692.963226 1813.686045 2204.597077 2218.889609 3476.355957 2067.809594 1.039056567 0.933451961 1.154162671 0.96532357 0.818722976 0.877104957 1.066150908 1.073062827 1.68117798 1 11.01388763 -8.54208547 24.96879533 1.352766475 0.980353572 0.393874945 0.176783913 220.3440747 286442.2518 0.11286707 0.0426727 2.87E-09 8.54208547 -0.372412902 TVAISDAAQLPHDYCT(ph)TPGGTLFS(ph)TTPGGTRIIYDR ddPTM_K562_Paclitaxel_30min_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTRIIYDR 36 1 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 TVAISDAAQLPHDY(0.085)CT(0.283)T(0.283)PGGT(0.289)LFS(0.269)T(0.269)T(0.269)PGGT(0.064)RIIY(0.189)DR 86.095 8.38E-10 119510000 902.05 965.94 1165.5 807.14 672.99 795.9 758.12 693.01 1144.6 1074.6 TRUE FALSE 914.6814831 1071.404596 871.2551103 755.373653 764.6626318 937.04169 901.9693123 634.1344749 1254.543944 855.5959301 1.069057777 1.252231992 1.018302074 0.882862607 0.893719342 1.095191851 1.054200097 0.741161163 1.466280869 1 9.74078581 -5.861146085 8.054597563 1.003535002 1.159812689 0.082551207 0.18369041 0.495058752 35.04426257 0.045750586 0.096020167 1.38E-06 5.861146085 0.156277687 TVAISDAAQLPHDYCT(ph)TPGGTLFS(ph)TTPGGTRIIYDRK ddPTM_K562_Paclitaxel_30min_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTRIIYDRK 37 2 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 TVAISDAAQLPHDY(0.149)CT(0.382)T(0.382)PGGT(0.223)LFS(0.266)T(0.266)T(0.266)PGGT(0.034)RIIY(0.031)DRK 58.111 0.00028733 332400000 2135.4 2050.9 3770 2483.4 1849.4 1644 1515.4 2404.6 3241.5 2767.9 TRUE FALSE 2165.302188 2274.824198 2818.216873 2324.125839 2101.319591 1935.540317 1802.939239 2200.314221 3552.860558 2203.800461 0.982530963 1.032227844 1.278798568 1.054599035 0.953498118 0.878273851 0.818104575 0.998418078 1.612151654 1 11.10577789 -8.662856352 25 1.306160559 1.000155457 0.319965405 0.178742303 13.29235228 3350.381504 0.121017718 0.045740384 2.17E-09 8.662856352 -0.306005103 TVAISDAAQLPHDYCT(ph)TPGGTLFSTTPGGTR ddPTM_K562_Paclitaxel_30min_R1 2 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 1 TVAISDAAQLPHDY(0.016)CT(0.474)T(0.474)PGGT(0.033)LFS(0.002)T(0.001)TPGGTR;TVAISDAAQLPHDY(0.039)CT(0.443)T(0.443)PGGT(0.057)LFS(0.012)T(0.003)T(0.004)PGGT(0.001)R 92.924 8.55E-10 80744000 2767.6 2668.9 3270.2 3091.7 2373.1 2311.86 2346.98 3031.1 2529.78 2899.9 TRUE FALSE 2806.354939 2960.299528 2444.597565 2893.4122 2696.356397 2721.835911 2792.307203 2773.589135 2772.776672 2308.898788 1.215451692 1.282126156 1.058772077 1.253156793 1.167810564 1.178845918 1.209367521 1.201260596 1.200908713 1 11.17298922 -10.95810624 4.70789006 0.999998149 1.195718814 0.526532181 0.055871857 39018686.33 13.07105932 1029.989903 0.012868644 1.10E-11 10.95810624 0.195720665 TVAISDAAQLPHDYCTT(ph)PGGTLFS(ph)TTPGGTRIIYDR ddPTM_K562_Paclitaxel_30min_R1 1 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTRIIYDR 36 1 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 TVAISDAAQLPHDY(0.155)CT(0.172)T(0.486)PGGT(0.225)LFS(0.312)T(0.312)T(0.312)PGGT(0.017)RIIY(0.011)DR 70.264 3.75E-06 129500000 1374.5 984.24 1353.8 1444.3 933.25 1055 1185.9 1471.3 1569.7 1528.7 TRUE FALSE 1393.747241 1091.702652 1012.016446 1351.669062 1060.37445 1242.089437 1410.918334 1346.303881 1720.476699 1217.150101 1.145090683 0.89693346 0.831463963 1.110519616 0.871194481 1.020489943 1.159198305 1.10611163 1.413528781 1 10.24929138 -7.733519604 2.819564088 1.186109925 0.964764093 0.331421563 0.133398237 0.289810443 4.712911768 0.057377016 0.039652991 1.85E-08 7.733519604 -0.221345832 TVAISDAAQLPHDYCTT(ph)PGGTLFSTT(ph)PGGTR ddPTM_K562_Paclitaxel_30min_R1 2 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 2 TVAISDAAQLPHDY(0.001)CT(0.448)T(0.54)PGGT(0.025)LFS(0.117)T(0.264)T(0.602)PGGT(0.004)R;TVAISDAAQLPHDY(0.052)CT(0.455)T(0.519)PGGT(0.055)LFS(0.232)T(0.203)T(0.471)PGGT(0.013)R 119.98 2.99E-17 1178420000 2560.3 3009.1 3975 3037.2 2405.8 2888.7 3106.5 3352.7 2063.08 3949.4 TRUE FALSE 2596.152099 3337.643714 2971.462088 2842.407586 2733.510691 3400.970386 3695.942158 3067.867208 2261.248052 3144.510112 0.825614168 1.061419297 0.944968209 0.903926998 0.8692962 1.081558101 1.175363419 0.975626441 0.719109805 1 11.61861956 -5.235618038 23.16037237 0.973267019 0.825613647 0.116372882 0.119195488 7078.14516 6348452.693 0.031110754 1.973001926 5.81E-06 5.235618038 -0.147653371 TVAISDAAQLPHDYCTTPGGTLFSTT(ph)PGGTR ddPTM_K562_Paclitaxel_30min_R1 3 TVAISDAAQLPHDYCTTPGGTLFSTTPGGTR 31 0 Q13542 Q13542 EIF4EBP2 Eukaryotic translation initiation factor 4E-binding protein 2 1 TVAISDAAQLPHDY(0.001)CT(0.017)T(0.049)PGGT(0.092)LFS(0.07)T(0.188)T(0.512)PGGT(0.07)R;TVAISDAAQLPHDYCT(0.001)T(0.004)PGGT(0.047)LFS(0.197)T(0.198)T(0.498)PGGT(0.054)R;TVAISDAAQLPHDYCTTPGGT(0.003)LFS(0.023)T(0.26)T(0.708)PGGT(0.006)R 146.87 9.42E-38 425790000 4644.7 4606.9 6543.8 6049.9 5363.5 4857.5 4737.5 5366.3 4408.4 6026.3 TRUE FALSE 4709.74013 5109.896922 4891.736757 5661.886492 6094.099505 5718.909422 5636.415894 4910.39932 4831.846517 4798.136752 0.981576886 1.064975257 1.019507573 1.180017741 1.270097086 1.191902132 1.174709306 1.023397117 1.007025595 1 12.22825856 -8.355214594 5.952936999 1.008281686 1.129620235 0.298093768 0.081594904 0.345789542 17.84377938 0.052313851 0.024595199 4.41E-09 8.355214594 0.121338549 TVANLLSGKS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 TVANLLSGKSPR 12 1 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;A0A2R8Y857;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8 E7ETY2;Q13428 TCOF1 Treacle protein 1 TVANLLS(0.008)GKS(0.992)PR 86.411 0.016153 687420000 5940.6 4514.4 8814.2 6615.4 5360.6 4527.1 4533.9 6606.5 6016.8 6857.3 TRUE FALSE 6023.786728 5007.297459 6588.946197 6191.117853 6090.804476 5329.917621 5394.183856 6045.236589 6594.740524 5459.778496 1.103302402 0.917124653 1.206815662 1.133950371 1.115577213 0.976214992 0.987985842 1.107231107 1.207876937 1 12.41462671 -8.503346549 24.6080563 1.121810318 1.063136185 0.034269503 0.093160764 1806.375205 2275819.016 0.053001969 0.024873396 3.14E-09 8.503346549 -0.058674133 TVAS(ph)DLQK ddPTM_K562_Paclitaxel_30min_R1 1 TVASDLQK 8 0 Q7L8J4-2;Q7L8J4 Q7L8J4-2 SH3BP5L SH3 domain-binding protein 5-like 1 T(0.023)VAS(0.977)DLQK 93.442 0.015442 12486000 1752.2 1448.4 2717.7 1819.3 1527.3 1530.6 1342.6 2223.5 1837.2 2563.4 TRUE FALSE 1776.736206 1606.54121 2031.583023 1702.618241 1735.344117 1802.030419 1597.351341 2034.599796 2013.671269 2040.977673 0.870531917 0.787142962 0.995396985 0.834216985 0.850251397 0.882925102 0.782640282 0.996875088 0.98662092 1 10.99504468 -8.283691574 24.41260806 0.993811049 0.859971168 0.55822745 0.055785054 463.8676962 508899.8238 0.029721309 0.014297271 5.20E-09 8.283691574 -0.133839882 TVAT(ph)PLNQVANPNSAIFGGARPR ddPTM_K562_Paclitaxel_30min_R1 2 TVATPLNQVANPNSAIFGGARPR 23 1 Q15056-2;Q15056 Q15056-2 EIF4H Eukaryotic translation initiation factor 4H 1 T(0.011)VAT(0.989)PLNQVANPNSAIFGGARPR;T(0.032)VAT(0.968)PLNQVANPNSAIFGGARPR 119.5 1.22E-05 106051000 1821.83 1690.67 2310.2 1834.77 1493.42 1536.75 1494.02 1625.58 1515.11 1819.16 TRUE FALSE 1847.341241 1875.263068 1726.961438 1717.096064 1696.849088 1809.271035 1777.502496 1487.476832 1660.643085 1448.414193 1.275423321 1.294700837 1.192311872 1.185500717 1.171521997 1.249139261 1.227205936 1.026969246 1.146525001 1 10.5002585 -7.725643469 0.029929038 1.88E-05 2.334480685 0.674186816 0.05304729 110.9788925 1.947773179 71.86570741 79.15290632 1.88E-08 7.725643469 2.33446185 TVDLGIS(ph)DLEDDC ddPTM_K562_Paclitaxel_30min_R1 4 TVDLGISDLEDDC 13 0 F5H5U2;Q8NHQ9-2;Q8NHQ9 F5H5U2 DDX55 ATP-dependent RNA helicase DDX55 1 TVDLGIS(1)DLEDDC;TVDLGIS(1)DLEDDC;TVDLGIS(1)DLEDDC;T(0.001)VDLGIS(0.999)DLEDDC 191.33 8.95E-05 29986400 17046.8 16273.2 19390.8 18154.1 14689 13749.5 15558.8 18578.3 18931.7 18148.4 TRUE FALSE 17285.50779 18049.96301 14495.35272 16989.77728 16689.89049 16187.78077 18511.00108 16999.95745 20750.17437 14449.74612 1.196249931 1.249154335 1.003156222 1.175783792 1.155030016 1.120281328 1.281060645 1.176488314 1.436023457 1 13.81875652 -7.755899762 24.99554514 1.238100466 1.149185962 0.081234262 0.116883465 294.7442342 1329935.342 0.043280321 0.032565715 1.75E-08 7.755899762 -0.088914504 TVDSQGPT(ph)PVCT(ph)PTFLER ddPTM_K562_Paclitaxel_30min_R1 2 TVDSQGPTPVCTPTFLER 18 0 H7BZL0;Q9BYG3;C9J808 H7BZL0 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 2 TVDS(0.001)QGPT(0.999)PVCT(0.993)PT(0.007)FLER;TVDS(0.001)QGPT(0.999)PVCT(0.936)PT(0.064)FLER 153.21 1.65E-08 39102000 2472.14 1915.19 2421.9 1943.38 2063.4 2242.18 1958.52 2682.3 1890.33 3507.9 TRUE FALSE 2506.757587 2124.296921 1810.461391 1818.740305 2344.470014 2639.799141 2330.138946 2454.421873 2071.904643 2792.988054 0.897518191 0.760582172 0.648216661 0.651180839 0.839412832 0.945152321 0.834281744 0.878779939 0.741823668 1 11.44759369 -6.932441035 7.747497338 0.872060041 0.734917868 0.349638822 0.090436998 0.290160391 28.7651667 0.028772959 0.03265306 1.17E-07 6.932441035 -0.137142173 TVDSQGPTPVCT(ph)PTFLER ddPTM_K562_Paclitaxel_30min_R1 2 TVDSQGPTPVCTPTFLER 18 0 H7BZL0;Q9BYG3;C9J808 H7BZL0 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 1 TVDS(0.001)QGPT(0.029)PVCT(0.78)PT(0.189)FLER;T(0.004)VDSQGPT(0.034)PVCT(0.851)PT(0.11)FLER 152.13 4.11E-09 64283000 1792.37 1945.56 2352.33 2224.07 2008 1766.68 1919.36 2154.72 1007.29 2056.39 TRUE FALSE 1817.46871 2157.98282 1758.455198 2081.428105 2281.523596 2079.975893 2283.54854 1971.663087 1104.044705 1637.296589 1.110042446 1.318015828 1.073999182 1.271259049 1.39346995 1.270372092 1.394706711 1.204218649 0.674309537 1 10.67709997 -8.664980954 6.43895281 0.841922312 1.264350042 0.649959568 0.122863545 0.115767814 6.338033424 0.083746481 0.03057708 2.16E-09 8.664980954 0.422427731 TVDVPASLPT(ph)PPHNNQEELR ddPTM_K562_Paclitaxel_30min_R1 2 TVDVPASLPTPPHNNQEELR 20 0 H7BY37;Q8NEZ4-2;Q8NEZ4;Q8NEZ4-3;H7C2V8;H0Y765 H7BY37 KMT2C Histone-lysine N-methyltransferase 2C 1 TVDVPASLPT(1)PPHNNQEELR;TVDVPAS(0.007)LPT(0.993)PPHNNQEELR 90.884 0.0010171 33576000 3117.57 3194.85 4157.7 3886.5 2889.76 3210.87 3022.73 3978.65 3148.24 3977 TRUE FALSE 3161.225599 3543.674527 3108.037213 3637.237285 3283.394236 3780.272712 3596.277238 3640.638849 3450.642519 3166.485217 0.998338973 1.119119239 0.981541678 1.148667067 1.036920753 1.193838737 1.135731573 1.149741306 1.089739027 1 11.62866663 -6.274825238 24.97975448 1.11583949 1.041611887 0.214670147 0.063657771 1092.741753 2039196.078 0.016980924 0.025358182 5.31E-07 6.274825238 -0.074227603 TVECEEGS(ph)EDDESLREMVELAAQR ddPTM_K562_Paclitaxel_30min_R1 2 TVECEEGSEDDESLREMVELAAQR 24 1 G5E9W3;Q9UKF6 G5E9W3 CPSF3 Cleavage and polyadenylation specificity factor subunit 3 1 T(0.082)VECEEGS(0.918)EDDESLREMVELAAQR;T(0.002)VECEEGS(0.976)EDDES(0.022)LREMVELAAQR 64.779 0.0030776 42330000 176.4 210.11 437.92 318.77 236.25 0 125.37 406.57 406.95 183.97 TRUE FALSE 178.8701442 233.0505203 327.3616799 298.325519 268.4312497 0 149.158303 372.0293408 446.0393658 146.476813 1.221149891 1.591040353 2.234904441 2.036674016 1.832585269 0 1.018306583 2.539851415 3.045119269 1 7.194528497 -10.85415431 13.73975703 0.999965443 1.700360464 0.066777981 0.807927325 0 0 0.850899191 0.206373367 1.40E-11 10.85415431 0.700395022 TVEDEDQDS(ph)EEEKDNDSYIKER ddPTM_K562_Paclitaxel_30min_R1 2 TVEDEDQDSEEEKDNDSYIKER 22 2 Q9Y5T5-4;Q9Y5T5-3;Q9Y5T5-2;Q9Y5T5 Q9Y5T5-4 USP16 Ubiquitin carboxyl-terminal hydrolase 16 1 T(0.001)VEDEDQDS(0.958)EEEKDNDS(0.022)Y(0.019)IKER;T(0.002)VEDEDQDS(0.998)EEEKDNDSYIKER 57.045 0.012162 47665000 2273.34 1860.86 6724.6 2785.58 1913.12 1336.65 1574.72 3206.1 3033.7 3866.1 TRUE FALSE 2305.173774 2064.034988 5026.891561 2606.925367 2173.719333 1573.68611 1873.514899 2933.721793 3325.10044 3078.186698 0.748873931 0.670535997 1.633069094 0.846902941 0.706168776 0.511238032 0.608642387 0.95306818 1.080214024 1 11.58786502 -6.505260082 24.97326734 0.782000606 1.025662053 0.088574171 0.290947503 1671.435232 2369148.025 0.086907601 0.125832916 3.12E-07 6.505260082 0.243661447 TVFAEHISDECK ddPTM_K562_Paclitaxel_30min_R1 1 TVFAEHISDECK 12 0 F8WCR1;H7C3M2;H7C422;P39023;B5MCW2;G5E9G0 F8WCR1 RPL3 60S ribosomal protein L3 0 107.09 0.00012298 0 4869.3 4224 8282.3 5689.5 4111.3 3917 4031.3 5401 4599.9 6766.1 FALSE TRUE 4937.485223 4685.190605 6191.330931 5324.600935 4671.328665 4611.624953 4796.21813 4942.151338 5041.740948 5387.165106 0.916527548 0.869695009 1.149274397 0.988386439 0.867121867 0.856039283 0.890304647 0.917393702 0.935880161 1 12.39531057 -6.746472733 24.58245844 0.903197833 0.985044291 0.159613879 0.077016011 337.8516937 554912.4673 0.023735258 0.030507005 1.79E-07 6.746472733 0.081846458 TVFPGAVPVLPAS(ph)PPPKDSLR ddPTM_K562_Paclitaxel_30min_R1 2 TVFPGAVPVLPASPPPKDSLR 21 1 M0R165;Q9UBC2-4;Q9UBC2-3;Q9UBC2;Q9UBC2-2;M0R2S2 M0R165 EPS15L1 Epidermal growth factor receptor substrate 15-like 1 1 TVFPGAVPVLPAS(0.997)PPPKDS(0.003)LR;TVFPGAVPVLPAS(0.995)PPPKDS(0.005)LR 167.98 1.92E-18 269550000 5052.1 4746.6 8347.6 5448.5 4721.8 4184.4 4426.4 6188.7 5725 7820.8 TRUE FALSE 5122.844987 5264.84984 6240.145138 5099.057597 5364.989101 4926.444588 5266.286293 5662.931306 6274.91183 6226.916667 0.82269368 0.845498683 1.002124402 0.818873589 0.86158036 0.791153126 0.845729367 0.909427829 1.007707693 1 12.60430226 -8.62002143 3.057286878 1.006103496 0.85750555 0.546994471 0.053426418 0.208895899 3.688575176 0.046523414 0.014780135 2.40E-09 8.62002143 -0.148597946 TVFSPT(ph)LPAAR ddPTM_K562_Paclitaxel_30min_R1 1 TVFSPTLPAAR 11 0 C9J6P4;Q7Z2W4-3;Q7Z2W4-2;Q7Z2W4 C9J6P4 ZC3HAV1 Zinc finger CCCH-type antiviral protein 1 1 TVFS(0.278)PT(0.722)LPAAR 111.5 0.012383 306520000 2179 2138.8 2882.2 2128.1 2102 1945.3 1957.7 2435.3 2186.8 2460.3 TRUE FALSE 2209.512723 2372.321417 2154.552963 1991.613191 2388.327987 2290.271642 2329.163355 2228.406064 2396.851911 1958.88951 1.127941475 1.211054225 1.099884885 1.016705221 1.219225472 1.169168363 1.189022323 1.1375864 1.223576878 1 10.93582031 -5.764028775 24.99961929 1.139186305 1.169497837 0.031606089 0.075024039 303.9811443 2934944.604 0.019433986 0.04374919 1.72E-06 5.764028775 0.030311532 TVGGCGALPHGAS(ph)CPYSQERPGAIGLDGCYSE ddPTM_K562_Paclitaxel_30min_R1 1 TVGGCGALPHGASCPYSQERPGAIGLDGCYSE 32 1 Q8NB46 Q8NB46 ANKRD52 Serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit C 1 TVGGCGALPHGAS(0.73)CPY(0.153)S(0.047)QERPGAIGLDGCY(0.039)S(0.03)E 50.505 0.0043177 10970000 752.06 599.59 778.81 701.8 799.02 704.88 815.04 976.63 868.72 964.54 TRUE FALSE 762.5911603 665.0552639 582.1897833 656.7896891 907.8600515 829.880571 969.6895852 893.6591856 952.1644375 767.9662186 0.993000918 0.865995467 0.758092959 0.855232526 1.182161441 1.080621193 1.262672188 1.163669917 1.239851981 1 9.584899041 -6.759998695 24.99999435 1.164694698 0.860075237 0.716172311 0.088246914 19.37735672 336247.6781 0.026343118 0.032192708 1.74E-07 6.759998695 -0.304619461 TVHPNS(ph)PGIPYR ddPTM_K562_Paclitaxel_30min_R1 1 TVHPNSPGIPYR 12 0 J3KPH8;Q8WUI4-3;Q8WUI4-4;Q8WUI4;Q8WUI4-7;Q8WUI4-6;Q8WUI4-5;Q8WUI4-8;C9J102;C9JNI4;F8VWY3 J3KPH8 HDAC7 Histone deacetylase;Histone deacetylase 7 1 T(0.003)VHPNS(0.684)PGIPY(0.313)R 117.08 0.0036633 8634600 2029.8 2115 2321.3 1917.7 1792.4 1537.7 1425.5 2128.6 1824.2 2042.4 TRUE FALSE 2058.223462 2345.922852 1735.259106 1794.707305 2036.555226 1810.389505 1695.981183 1947.762144 1999.422561 1626.157759 1.265697286 1.442617015 1.06709149 1.103648951 1.25237248 1.113292665 1.04293767 1.197769486 1.229537878 1 10.66725151 -5.764964105 24.9997416 1.133213318 1.354157167 0.525798793 0.086506448 63.61653672 451225.6994 0.022197623 0.04936819 1.72E-06 5.764964105 0.22094385 TVHRDS(ph)EEEDDYLFDDPLPIPLR ddPTM_K562_Paclitaxel_30min_R1 3 TVHRDSEEEDDYLFDDPLPIPLR 23 1 B3KSJ7;Q96SD1-2;Q96SD1-3;Q96SD1 B3KSJ7 DCLRE1C Protein artemis 1 T(0.304)VHRDS(0.694)EEEDDY(0.002)LFDDPLPIPLR;T(0.317)VHRDS(0.683)EEEDDYLFDDPLPIPLR;T(0.214)VHRDS(0.758)EEEDDY(0.028)LFDDPLPIPLR 103.73 5.14E-05 16064900 2104.32 2046.47 2489.03 2259.13 2118.92 2080.16 1802.77 2369.85 2375.03 2659.81 TRUE FALSE 2133.786972 2269.910515 1860.643593 2114.239513 2407.552778 2449.047169 2144.836196 2168.51645 2603.162243 2117.739262 1.007577756 1.071855519 0.878598998 0.998347413 1.136850424 1.156444144 1.012795217 1.023977073 1.229217539 1 11.04830926 -6.682334632 7.215556296 1.093377086 0.98598378 0.289986772 0.079872793 0.303033118 23.19687126 0.023837703 0.030751652 2.08E-07 6.682334632 -0.107393306 TVIESSPES(ph)PVTITEPYR ddPTM_K562_Paclitaxel_30min_R1 1 TVIESSPESPVTITEPYR 18 0 Q8TEQ6 Q8TEQ6 GEMIN5 Gem-associated protein 5 1 TVIES(0.012)S(0.158)PES(0.299)PVT(0.233)IT(0.298)EPYR 86.016 0.0051313 20037000 966.07 1083.2 1070.5 1259.6 992.19 864.57 900.36 1314.8 990.07 1334.2 TRUE FALSE 979.5979606 1201.467439 800.2390352 1178.814894 1127.343076 1017.88935 1071.19861 1203.099533 1085.170647 1062.289308 0.922157414 1.131017163 0.753315532 1.109692892 1.06123922 0.958203517 1.008386889 1.132553556 1.02153965 1 10.05296101 TVIIEQS(ph)WGSPK ddPTM_K562_Paclitaxel_30min_R1 2 TVIIEQSWGSPK 12 0 E7EXB4;E7ESH4;P10809-2;P10809;C9JL19;C9JCQ4;C9JL25 E7EXB4 HSPD1 "60 kDa heat shock protein, mitochondrial" 1 T(0.107)VIIEQS(0.706)WGS(0.186)PK;TVIIEQS(0.646)WGS(0.354)PK 164.7 0.00011904 116846000 7796.5 6706.3 13074.4 7904.8 5542.8 6114.9 5756.4 7331.2 6759.9 9787.8 TRUE FALSE 7905.675054 7438.516513 9773.606018 7397.821509 6297.8232 7199.291658 6848.64685 6708.3688 7409.218599 7793.040987 1.01445316 0.954507557 1.254145337 0.94928559 0.808134233 0.923810316 0.87881571 0.860815285 0.95074806 1 12.92797069 -6.509113109 24.87703941 0.894901442 1.068938065 0.437507695 0.086205638 530.0996839 957988.367 0.023994551 0.033945045 3.10E-07 6.509113109 0.174036623 TVIIHDRPDITHPR ddPTM_K562_Paclitaxel_30min_R1 1 TVIIHDRPDITHPR 14 1 Q9NWH9-3;Q9NWH9;H7C3F4 Q9NWH9-3 SLTM SAFB-like transcription modulator 0 89.43 0.014403 5073400 2049.5 1952.3 2198.5 2425.2 2064.2 1972 1841.9 1957.9 1953.3 2634.7 FALSE TRUE 2078.199323 2165.458716 1643.461484 2269.658527 2345.378987 2321.706512 2191.39091 1791.564174 2140.923193 2097.746694 0.99068173 1.032278455 0.783441342 1.081950711 1.118046804 1.106762088 1.044640383 0.854042187 1.020582322 1 11.03462477 -4.848513745 12.34672333 1.004031824 0.000819676 0.001658745 0.101744007 803488.8661 512098.8562 0.026854564 22434668.85 1.42E-05 4.848513745 -1.003212148 TVIRLPSGSGAAS(ph)PTGSAVDIR ddPTM_K562_Paclitaxel_30min_R1 2 TVIRLPSGSGAASPTGSAVDIR 22 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 TVIRLPSGSGAAS(0.651)PT(0.307)GS(0.042)AVDIR;TVIRLPS(0.151)GS(0.091)GAAS(0.378)PT(0.378)GS(0.002)AVDIR 129.77 4.30E-08 133245000 2515.88 2592.02 3312.22 2831.8 2473.01 2715.25 2168.16 2767.43 4141.52 3245.95 TRUE FALSE 2551.110082 2875.025509 2476.009096 2650.181023 2809.87583 3196.761463 2579.557041 2532.319548 4539.331501 2584.423608 0.987109882 1.112443603 0.958050796 1.025443745 1.087235011 1.236934012 0.998116962 0.979839195 1.756419298 1 11.33562684 -8.701815041 24.99999809 1.378247213 1.052457725 0.334131085 0.186296827 66.82944093 28020.75894 0.115163227 0.043527542 1.99E-09 8.701815041 -0.325789487 TVIRLPSGSGAASPTGS(ph)AVDIR ddPTM_K562_Paclitaxel_30min_R1 1 TVIRLPSGSGAASPTGSAVDIR 22 1 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 TVIRLPSGSGAAS(0.019)PT(0.028)GS(0.953)AVDIR 125.51 9.27E-08 116780000 948.87 1109.6 1584.5 1655.2 1072.6 1198.7 1015.6 1445.2 1700.9 1354.9 TRUE FALSE 962.1571075 1230.74988 1184.473378 1549.04288 1218.706279 1411.272614 1208.304798 1322.421239 1864.279045 1078.770636 0.891901462 1.140881888 1.097984445 1.435933486 1.129717697 1.308223052 1.120075721 1.225859506 1.728151455 1 10.07517244 -4.532506045 0.794688714 1.278971533 7.05E-12 0.261077342 0.193463711 9.739611336 2.054277036 0.068632741 14.42649393 2.93E-05 4.532506045 -1.278971533 TVKQEQINTEPLEDTVLS(ph)PTK ddPTM_K562_Paclitaxel_30min_R1 2 TVKQEQINTEPLEDTVLSPTK 21 1 O15446;O15446-2 O15446 CD3EAP DNA-directed RNA polymerase I subunit RPA34 1 TVKQEQINTEPLEDT(0.006)VLS(0.497)PT(0.497)K;TVKQEQINTEPLEDT(0.05)VLS(0.769)PT(0.181)K 106.06 0.00012384 44813000 7696 5203.5 16297.4 8664.6 6492.1 4749.7 4215.9 7209.6 6413 10660.3 TRUE FALSE 7803.767744 5771.635727 12182.91981 8108.891337 7376.433932 5591.992606 5015.845017 6597.099479 7028.997304 8487.725008 0.91941807 0.679997964 1.435357507 0.955366877 0.869070796 0.658832915 0.590952819 0.777251793 0.828136785 1 13.0511622 -6.917188249 3.23981129 0.746999403 1.006176894 0.2139928 0.201224806 0.360788945 7.60598158 0.067703744 0.077234122 1.21E-07 6.917188249 0.259177491 TVLEGSTAST(ph)SPADHSALPNQSLTVR ddPTM_K562_Paclitaxel_30min_R1 1 TVLEGSTASTSPADHSALPNQSLTVR 26 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 TVLEGS(0.041)T(0.041)AS(0.131)T(0.43)S(0.357)PADHSALPNQSLTVR 93.2 4.30E-05 43072000 761.51 667.53 962.75 726.61 699.6 661.55 700.71 811.94 779.97 681.37 TRUE FALSE 772.1734895 740.4131828 719.6918554 680.0084868 794.8973643 778.8666039 833.6660645 742.960629 854.8896035 542.50642 1.423344427 1.364800776 1.326605232 1.253457032 1.465231258 1.435681819 1.536693454 1.369496474 1.575814722 1 9.0834964 -11.15909343 5.072802234 0.999977661 1.411921813 0.654616963 0.090761262 2.39E-05 3.96E-06 0.091455759 0.022180078 6.93E-12 11.15909343 0.411944151 TVLEGSTASTS(ph)PADHSALPNQSLTVR ddPTM_K562_Paclitaxel_30min_R1 1 TVLEGSTASTSPADHSALPNQSLTVR 26 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 TVLEGST(0.001)AS(0.142)T(0.216)S(0.64)PADHSALPNQSLTVR 123.18 1.51E-10 61138000 277.87 273.98 513.07 280.68 233.65 417.1 239.27 264.3 200.12 460.54 TRUE FALSE 281.7610373 303.8940629 383.5391329 262.6784411 265.4770857 491.0668286 284.6702334 241.8460653 219.3424202 366.6816952 0.768407698 0.828768021 1.045972946 0.716366387 0.723998741 1.339218279 0.776341544 0.659553145 0.598182083 1 8.518384438 -7.985490591 24.995778 0.72090985 0.904119213 0.107761251 0.199484753 449.6898351 774692.014 0.083940882 0.056567254 1.03E-08 7.985490591 0.183209364 TVNLSVTPS(ph)PAPR ddPTM_K562_Paclitaxel_30min_R1 1 TVNLSVTPSPAPR 13 0 Q8IZ21-3;Q8IZ21;Q8IZ21-2 Q8IZ21-3 PHACTR4 Phosphatase and actin regulator 4 1 TVNLS(0.012)VT(0.159)PS(0.829)PAPR 110.97 0.0044477 14056000 851.09 848.1 794.26 844.3 644.36 787.71 648.51 953.53 1047.1 1479.5 TRUE FALSE 863.0078858 940.6984261 593.7392397 790.1503769 732.1327411 927.3993085 771.5613871 872.5216748 1147.678634 1177.977088 0.732618567 0.798571072 0.504032927 0.670768884 0.621516962 0.787281279 0.65498845 0.740694945 0.97427925 1 10.20209576 -8.727985956 3.277835753 1.003969698 0.68097354 0.696226767 0.079723212 0.133686879 2.740789679 0.072120833 0.021169009 1.87E-09 8.727985956 -0.322996158 TVNSGGSSEPSPT(ph)EVDVSR ddPTM_K562_Paclitaxel_30min_R1 2 TVNSGGSSEPSPTEVDVSR 19 0 Q6PIJ6;Q6PIJ6-2 Q6PIJ6 FBXO38 F-box only protein 38 1 TVNSGGSS(0.001)EPS(0.078)PT(0.921)EVDVSR;TVNS(0.001)GGS(0.002)S(0.002)EPS(0.096)PT(0.892)EVDVS(0.007)R 147.28 5.93E-12 7277000 1804.64 1828.19 2352.7 2109.94 1944.88 1609.04 2032.94 2080.81 1906.82 2649 TRUE FALSE 1829.910528 2027.797967 1758.731787 1974.617892 2209.805583 1894.380652 2418.679752 1904.032202 2089.978581 2109.132346 0.867612946 0.961437043 0.833865068 0.936222848 1.047732063 0.898180077 1.146765283 0.902756153 0.990918652 1 11.04243391 -6.534750724 11.64760442 0.995055495 0.89334929 0.319218548 0.072507229 0.525155039 505.8452522 0.020208046 0.026409121 2.92E-07 6.534750724 -0.101706205 TVPS(ph)DVDS ddPTM_K562_Paclitaxel_30min_R1 1 TVPSDVDS 8 0 Q9H6H4 Q9H6H4 REEP4 Receptor expression-enhancing protein 4 1 TVPS(0.999)DVDS(0.001) 146.79 6.60E-06 21488000 3016.2 2835.4 3791.1 2859.5 2108 2054.3 2628.7 3125.7 3193.3 3410 TRUE FALSE 3058.436106 3144.978561 2833.989917 2676.104469 2395.145289 2418.601261 3127.482102 2860.152275 3500.030733 2715.040128 1.126479154 1.158354357 1.043811429 0.985659269 0.882176755 0.890816027 1.151910084 1.053447515 1.289126704 1 11.40675781 -10.36939025 10.6256295 0.999989747 1.056221156 0.021581921 0.118978875 0 0 0.123375497 0.029922953 4.27E-11 10.36939025 0.05623141 TVPSTPTLVVPHRTDGFAEAIHS(ph)PQVAGVPR ddPTM_K562_Paclitaxel_30min_R1 1 TVPSTPTLVVPHRTDGFAEAIHSPQVAGVPR 31 1 P12270 P12270 TPR Nucleoprotein TPR 1 TVPST(0.002)PT(0.007)LVVPHRT(0.271)DGFAEAIHS(0.721)PQVAGVPR 57.025 0.00068221 31350000 1256.8 1015.3 1641.2 1422 1077.7 1028 1084.6 1215.9 912.32 1717.7 TRUE FALSE 1274.399078 1126.153888 1226.858762 1330.799285 1224.500986 1210.301366 1290.397188 1112.601706 999.9524124 1367.631797 0.931829079 0.823433537 0.89706803 0.9730684 0.895344045 0.884961412 0.943526752 0.813524304 0.731156159 1 10.41746416 -8.27261427 24.61549838 0.829255168 0.904675738 0.103728985 0.072857975 1057.277408 2328903.796 0.037732852 0.018392505 5.34E-09 8.27261427 0.07542057 TVQS(ph)PNSSVPSPGLAGPVTMTSVHPPIR ddPTM_K562_Paclitaxel_30min_R1 1 TVQSPNSSVPSPGLAGPVTMTSVHPPIR 28 0 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 T(0.138)VQS(0.751)PNS(0.055)S(0.055)VPSPGLAGPVTMTSVHPPIR 112.39 4.46E-10 63839000 394.84 472.4 643.69 702.54 328.41 565.91 436.58 604.06 418.4 673.54 TRUE FALSE 400.3689782 523.9782296 481.1824984 657.4822289 373.145002 666.2661927 519.4187759 552.7413326 458.5891895 536.2721783 0.74657794 0.97707517 0.897272911 1.22602338 0.695812718 1.242403055 0.968573044 1.03071044 0.855142609 1 9.066821598 -4.767820638 1.462627467 0.998116281 0.19471031 0.181609682 0.153417918 7.22885748 5.246306833 0.040209432 12.07242637 1.71E-05 4.767820638 -0.803405971 TVQSNS(ph)PISALAPTGKEEGLSTR ddPTM_K562_Paclitaxel_30min_R1 1 TVQSNSPISALAPTGKEEGLSTR 23 1 O95292 O95292 VAPB Vesicle-associated membrane protein-associated protein B/C 1 T(0.024)VQS(0.241)NS(0.73)PIS(0.005)ALAPTGKEEGLSTR 70.174 0.0022638 10746000 547.24 351.18 586.97 272.54 332.09 313.95 273.01 382.04 437.87 585.82 TRUE FALSE 554.9030484 389.52302 438.7821639 255.0605042 377.3262803 369.6246244 324.8122223 349.5833174 479.92937 466.4295624 1.189682415 0.835116492 0.940725458 0.54683606 0.808967336 0.792455398 0.696380008 0.749487909 1.028942864 1 8.86551542 -4.894491192 1.535005678 0.794038589 1.765320467 0.379729316 0.138258295 2.96453603 3.113627207 0.037430201 5.71441376 1.27E-05 4.894491192 0.971281878 TVQSPNS(ph)SVPSPGLAGPVTMTSVHPPIR ddPTM_K562_Paclitaxel_30min_R1 1 TVQSPNSSVPSPGLAGPVTMTSVHPPIR 28 0 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 T(0.019)VQS(0.214)PNS(0.743)S(0.024)VPSPGLAGPVTMTSVHPPIR 163.27 2.71E-35 80081000 958.23 926.72 1107.6 1224.4 668.63 750.57 899.93 1153.8 745.08 1261.5 TRUE FALSE 971.6481764 1027.902424 827.9726814 1145.872464 759.708726 883.673051 1070.68702 1055.777488 816.6482631 1004.405608 0.967386252 1.023393752 0.824340959 1.140846343 0.756376428 0.879797011 1.065990683 1.051146549 0.813066212 1 9.972126273 -8.759549217 24.99992157 0.906533161 0.960619292 0.035450118 0.118346037 208.7136906 2760823.869 0.088072439 0.029483593 1.74E-09 8.759549217 0.054086131 TVQSPNSSVPSPGLAGPVTMTSVHPPIRS(ph)PSASSVGSR ddPTM_K562_Paclitaxel_30min_R1 1 TVQSPNSSVPSPGLAGPVTMTSVHPPIRSPSASSVGSR 38 1 O15164-2;O15164 O15164-2 TRIM24 Transcription intermediary factor 1-alpha 1 TVQSPNSSVPS(0.001)PGLAGPVT(0.075)MT(0.075)S(0.075)VHPPIRS(0.231)PS(0.101)AS(0.118)S(0.163)VGS(0.163)R 40.864 0.012109 16175000 537.08 635.87 767.27 617.04 743.32 561.04 455.37 626.97 642.39 936.47 TRUE FALSE 544.600777 705.296437 573.563199 577.4658162 844.5727685 660.5325666 541.7740803 573.7049851 704.0944298 745.6169 0.730402942 0.945923352 0.769246511 0.774480589 1.132716773 0.885887333 0.726611857 0.769436671 0.944311254 1 9.54229075 TVS(ph)DNSLSNSR ddPTM_K562_Paclitaxel_30min_R1 2 TVSDNSLSNSR 11 0 B7ZL14;H0Y7W6;Q96RU3-4;Q96RU3-3;Q96RU3-5;Q96RU3-2;Q96RU3 B7ZL14 FNBP1 Formin-binding protein 1 1 T(0.019)VS(0.951)DNS(0.03)LSNSR;T(0.004)VS(0.952)DNS(0.042)LS(0.002)NSR 148.89 0.00037881 28468000 1708.4 1577.49 2509.5 2114.9 1647.43 1407.64 1710.29 2262.94 1246.13 2586.5 TRUE FALSE 1732.322871 1749.725693 1875.945688 1979.25978 1871.837857 1657.26519 2034.808599 2070.689122 1365.826354 2059.36988 0.841190739 0.849641295 0.910931885 0.961099703 0.908937183 0.804743823 0.9880734 1.005496459 0.663225372 1 11.00798726 -5.740613032 6.950094568 0.907036315 0.844684078 0.055282018 0.098885359 0.502017077 95.05565818 0.02463198 0.062463227 1.82E-06 5.740613032 -0.062352237 TVS(ph)PCQVQASCSQEENR ddPTM_K562_Paclitaxel_30min_R1 2 TVSPCQVQASCSQEENR 17 0 Q711Q0;Q711Q0-3 Q711Q0 C10orf71 Uncharacterized protein C10orf71 1 T(0.016)VS(0.979)PCQVQAS(0.002)CS(0.003)QEENR;TVS(1)PCQVQASCSQEENR 201.9 9.04E-14 24130200 1878.45 1580.82 2483.01 2225.72 1571.54 1469.38 1752.5 2225.56 1357.55 2808.2 TRUE FALSE 1904.754096 1753.419274 1856.143416 2082.972281 1785.610354 1729.953912 2085.027726 2036.484786 1487.948743 2235.887299 0.851900763 0.784216304 0.830159649 0.931608799 0.798613756 0.773721427 0.932528096 0.910817279 0.66548468 1 11.12663175 -11.07368698 4.35770318 1.000014016 0.835259341 0.294056007 0.078303905 114421277.6 139692331.5 21705.87685 0.019246188 8.44E-12 11.07368698 -0.164754676 TVS(ph)PSTIR ddPTM_K562_Paclitaxel_30min_R1 1 TVSPSTIR 8 0 Q96JH7 Q96JH7 VCPIP1 Deubiquitinating protein VCIP135 1 T(0.007)VS(0.962)PS(0.031)TIR 97.565 0.015071 101150000 2252.4 2459 3076.7 3010.4 2524.8 2081.8 2471.2 2729.1 1511 3433.3 TRUE FALSE 2283.940549 2727.481936 2299.949033 2817.326418 2868.720505 2450.978 2940.097299 2497.24592 1656.138301 2733.591575 0.835509068 0.997764977 0.841365277 1.030631804 1.049432743 0.896614557 1.075543737 0.913540246 0.605847017 1 11.41658199 -8.538725105 24.99389349 0.788513453 0.963767151 0.216420343 0.118107893 309.9204098 488816.4956 0.073790284 0.027907925 2.89E-09 8.538725105 0.175253698 TVSASS(ph)TGDLPK ddPTM_K562_Paclitaxel_30min_R1 1 TVSASSTGDLPK 12 0 H7C5L6;P78362;P78362-2 H7C5L6 SRPK2 SRSF protein kinase 2;SRSF protein kinase 2 N-terminal;SRSF protein kinase 2 C-terminal 1 TVSAS(0.003)S(0.996)TGDLPK 226.42 9.72E-23 25360000 6086.5 5583 11055 7044.5 5539.1 4799.9 4437.4 6667.4 6035.1 7786.4 TRUE FALSE 6171.729778 6192.57082 8264.028523 6592.6973 6293.619198 5651.094871 5279.373485 6100.962753 6614.798321 6199.527406 0.99551617 0.998877885 1.333009435 1.063419333 1.015177252 0.911536396 0.851576764 0.984101264 1.066984286 1 12.59794253 -6.833210293 3.074288093 0.956250067 1.109784747 0.276295651 0.102408863 0.329202695 6.287549418 0.035200557 0.042019334 1.47E-07 6.833210293 0.15353468 TVSGPGTPEPRPAT(ph)PGASSVEQLR ddPTM_K562_Paclitaxel_30min_R1 1 TVSGPGTPEPRPATPGASSVEQLR 24 1 Q9H3U1 Q9H3U1 UNC45A Protein unc-45 homolog A 1 TVSGPGTPEPRPAT(0.979)PGAS(0.011)S(0.011)VEQLR 132.52 5.41E-13 74611000 1484.4 951 1669.2 1259.8 1081.9 1065.2 838.26 1146.7 1269.1 1235.5 TRUE FALSE 1505.18618 1054.833396 1247.789816 1179.002067 1229.273097 1254.098264 997.315459 1049.280678 1391.002725 983.7044218 1.530120376 1.072307263 1.268460106 1.198532852 1.249636648 1.274873057 1.013836511 1.066662561 1.414045413 1 9.942081077 -5.250093453 24.20772411 1.179595782 1.5301207 0.414903382 0.126965007 1094.683488 2335555.199 0.030655842 0.450297079 5.62E-06 5.250093453 0.350524918 TVSGPGTPEPRPAT(ph)PGASSVEQLRK ddPTM_K562_Paclitaxel_30min_R1 2 TVSGPGTPEPRPATPGASSVEQLRK 25 2 Q9H3U1 Q9H3U1 UNC45A Protein unc-45 homolog A 1 TVSGPGT(0.101)PEPRPAT(0.884)PGAS(0.011)S(0.004)VEQLRK;TVSGPGT(0.011)PEPRPAT(0.986)PGAS(0.001)S(0.001)VEQLRK 92.034 0.00065457 133590000 5435.1 4458 8482.8 5373.2 3872.2 4297.8 3885.4 5879 5734.7 7025.7 TRUE FALSE 5511.208169 4944.739516 6341.212226 5028.587002 4399.659197 5059.954486 4622.634367 5379.542254 6285.543558 5593.858484 0.985224811 0.883958636 1.133602547 0.89894784 0.786516 0.904555326 0.826376709 0.961687227 1.1236508 1 12.44962804 -8.576885371 6.699478103 1.058399589 0.916214749 0.275216666 0.092785574 0.289828112 27.45431086 0.066527603 0.024723415 2.65E-09 8.576885371 -0.14218484 TVSLPLS(ph)SPNIK ddPTM_K562_Paclitaxel_30min_R1 1 TVSLPLSSPNIK 12 0 Q8IWZ3-6;Q8IWZ3;Q8IWZ3-4;H0Y785;H0Y472;H0Y4P6;A0A0A0MQZ8;H0Y7Y3 Q8IWZ3-6 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 1 TVSLPLS(0.622)S(0.378)PNIK 128.88 0.0010308 28567000 5812.9 4717.5 9169.1 5923.7 5174.8 4843.3 4613.9 7477.4 3151.2 9607.7 TRUE FALSE 5894.298534 5232.572604 6854.247303 5543.780396 5879.69537 5702.191252 5489.363439 6842.148198 3453.88684 7649.645466 0.77053225 0.68402812 0.896021565 0.724710762 0.768623251 0.745419023 0.717597105 0.894439909 0.451509401 1 12.90117717 -11.33005868 5.500772874 1.000052282 0.746749526 0.306134315 0.117293101 6.93E-05 8.44E-06 0.104619061 0.025368623 4.68E-12 11.33005868 -0.253302756 TVSLPLSS(ph)PNIK ddPTM_K562_Paclitaxel_30min_R1 1 TVSLPLSSPNIK 12 0 Q8IWZ3-6;Q8IWZ3;Q8IWZ3-4;H0Y785;H0Y472;H0Y4P6;A0A0A0MQZ8;H0Y7Y3 Q8IWZ3-6 ANKHD1 Ankyrin repeat and KH domain-containing protein 1 1 TVSLPLS(0.083)S(0.917)PNIK 158.06 0.0014008 23939000 6073.8 5012.7 9320.1 6345.8 4832.9 5186 4950.5 8154.7 3217.7 10396 TRUE FALSE 6158.851939 5560.003538 6967.125485 5938.808791 5491.222802 6105.664285 5889.831532 7461.907335 3526.774462 8277.289494 0.744066272 0.671717903 0.841715817 0.717482311 0.66340833 0.737640539 0.711565246 0.901491647 0.426078424 1 13.0149427 -12.05900843 2.575043537 1.396865112 0.720309449 0.343861494 0.118611331 25978192.19 6335091.611 60800018.25 0.02725812 8.73E-13 12.05900843 -0.676555663 TVSLTPSPTTQVETPDLVDHDNT(ph)SPLFR ddPTM_K562_Paclitaxel_30min_R1 2 TVSLTPSPTTQVETPDLVDHDNTSPLFR 28 0 Q05209-2;Q05209-3;Q05209;H3BM04 Q05209-2 PTPN12 Tyrosine-protein phosphatase non-receptor type 12 1 TVSLTPSPTTQVETPDLVDHDNT(0.594)S(0.406)PLFR;TVSLTPSPTTQVETPDLVDHDNT(0.621)S(0.379)PLFR 147.57 1.78E-31 192969000 4983 4630.8 6016.9 5012.4 4225.6 4081.9 4420 5535.4 5078.6 5750.8 TRUE FALSE 5052.777374 5136.406404 4497.859179 4690.927099 4801.19826 4805.767652 5258.671926 5065.133219 5566.422222 4578.783803 1.103519535 1.121783999 0.982326175 1.024491939 1.048575007 1.049572956 1.148486618 1.106218034 1.215698854 1 12.16074873 -7.752467391 24.97522204 1.12645238 1.053090259 0.192564341 0.061619962 273.2321189 760595.7764 0.023506111 0.017936313 1.77E-08 7.752467391 -0.073362121 TVSPGSVS(ph)PIHGQGQVVENLK ddPTM_K562_Paclitaxel_30min_R1 4 TVSPGSVSPIHGQGQVVENLK 21 0 A0A087WVF7;Q9NZM3-4;Q9NZM3-3;Q9NZM3-2;Q9NZM3 A0A087WVF7 ITSN2 Intersectin-2 1 T(0.001)VS(0.005)PGS(0.152)VS(0.842)PIHGQGQVVENLK;TVS(0.001)PGS(0.015)VS(0.984)PIHGQGQVVENLK;T(0.003)VS(0.009)PGS(0.18)VS(0.808)PIHGQGQVVENLK;T(0.023)VS(0.023)PGS(0.2)VS(0.754)PIHGQGQVVENLK 108.49 9.67E-05 102486000 6652.5 6110.9 10337.8 7161.4 5631 4487.38 4882.41 7629.9 5762.2 9487.9 TRUE FALSE 6745.655525 6778.108728 7727.894534 6702.099857 6398.037534 5283.153837 5808.82181 6981.692371 6315.685056 7554.260772 0.892960374 0.897256387 1.022984878 0.887194665 0.846944225 0.699360797 0.768946424 0.924205899 0.836042764 1 12.88307487 -6.619684812 3.746825911 0.831060937 0.936343746 0.179985311 0.08360829 0.342402332 9.22439884 0.026029513 0.034534221 2.40E-07 6.619684812 0.105282809 TVSQQS(ph)FDGVSLDSSGPEDR ddPTM_K562_Paclitaxel_30min_R1 1 TVSQQSFDGVSLDSSGPEDR 20 0 H7C1J4;Q6BDS2 H7C1J4 UHRF1BP1 UHRF1-binding protein 1 1 TVS(0.012)QQS(0.914)FDGVS(0.073)LDSSGPEDR 91.926 0.00098513 17977000 797.66 620.56 808.82 889.81 491.07 621.3 556.02 784.76 574.27 692.27 TRUE FALSE 808.829701 688.3148394 604.6233876 832.7415692 557.9620479 731.4788315 661.5218924 718.0897397 629.4311994 551.184994 1.467437811 1.248790963 1.09695183 1.510820466 1.012295425 1.327102224 1.200181245 1.302810758 1.14195997 1 9.106392801 -15 0.116643488 0.182013082 1.383552473 0.275712244 0.141630461 223.2709816 1.700390569 43.27898987 1.429022811 1.00E-15 15 1.201539391 TVSS(ph)PIPYTPSPSSSR ddPTM_K562_Paclitaxel_30min_R1 2 TVSSPIPYTPSPSSSR 16 0 Q16204 Q16204 CCDC6 Coiled-coil domain-containing protein 6 1 TVS(0.018)S(0.713)PIPYT(0.023)PS(0.077)PS(0.007)S(0.111)S(0.05)R;T(0.003)VS(0.119)S(0.878)PIPYTPSPSSSR 140.31 1.32E-08 64635000 3701.6 3251.6 5912.5 4725.5 4518.2 3864.8 2777.9 3352.2 3809.5 3677.9 TRUE FALSE 3753.43382 3606.620684 4419.81625 4422.427581 5133.655334 4550.168016 3304.992023 3067.409686 4175.419496 2928.341961 1.281760761 1.231625518 1.509323811 1.510215555 1.753092843 1.553837658 1.128622295 1.047490261 1.425864722 1 11.51586832 -7.766809078 24.9934729 1.154451771 1.478355745 0.460882604 0.170969525 134.1935999 624600.8239 0.075842797 0.05280744 1.71E-08 7.766809078 0.323903973 TVSS(ph)PPT(ph)SPRPGSAATVSASTSNIIPPR ddPTM_K562_Paclitaxel_30min_R1 2 TVSSPPTSPRPGSAATVSASTSNIIPPR 28 1 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 2 T(0.079)VS(0.111)S(0.791)PPT(0.468)S(0.458)PRPGS(0.051)AAT(0.004)VS(0.004)AS(0.008)T(0.019)S(0.007)NIIPPR;T(0.009)VS(0.062)S(0.798)PPT(0.824)S(0.301)PRPGS(0.001)AATVSAS(0.001)T(0.002)S(0.001)NIIPPR 79.589 0.00012329 739570000 4585.7 3866.6 6080.7 5515.7 4538.8 3851 4219.4 5037.9 4131.3 5676.2 TRUE FALSE 4649.913948 4288.768464 4545.55208 5161.947689 5157.061403 4533.920779 5020.009123 4609.898949 4528.129824 4519.387324 1.028881486 0.948971211 1.005789447 1.142178645 1.141097461 1.003215802 1.11077205 1.02002741 1.001934444 1 12.14191149 -6.019380135 24.46893169 1.064644553 0.986039831 0.224237168 0.05574 739.8274109 934092.8093 0.015401151 0.027231239 9.56E-07 6.019380135 -0.078604722 TVSSPPT(ph)S(ph)PRPGSAATVSASTSNIIPPR ddPTM_K562_Paclitaxel_30min_R1 2 TVSSPPTSPRPGSAATVSASTSNIIPPR 28 1 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 2 T(0.005)VS(0.015)S(0.049)PPT(0.795)S(0.792)PRPGS(0.044)AAT(0.015)VS(0.02)AS(0.039)T(0.113)S(0.113)NIIPPR;T(0.002)VS(0.017)S(0.15)PPT(0.885)S(0.885)PRPGS(0.034)AAT(0.002)VS(0.006)AS(0.008)T(0.009)S(0.004)NIIPPR 73.781 0.00047826 333847500 5827 5303.9 7287.4 7108.1 5558.7 5237 5129.3 5752.7 5125.8 7261.4 TRUE FALSE 5908.595978 5882.997739 5447.605741 6652.218281 6315.88905 6165.708419 6102.557898 5263.972228 5618.155993 5781.522694 1.021979207 1.017551612 0.942244116 1.150599701 1.092426578 1.066450613 1.055527795 0.91048198 0.971743309 1 12.49723379 -8.245313191 24.45297794 0.955834485 1.050369679 0.35508282 0.054712667 658.6739045 998783.7364 0.027510789 0.015815394 5.68E-09 8.245313191 0.094535194 TVSSPPT(ph)SPRPGSAATVSASTSNIIPPR ddPTM_K562_Paclitaxel_30min_R1 1 TVSSPPTSPRPGSAATVSASTSNIIPPR 28 1 O76094-2;O76094 O76094-2 SRP72 Signal recognition particle subunit SRP72 1 T(0.001)VS(0.014)S(0.049)PPT(0.351)S(0.351)PRPGS(0.225)AAT(0.003)VS(0.002)AS(0.003)T(0.001)SNIIPPR 78.098 0.00038388 108000000 254.31 375.76 500.16 530.27 376.03 259.86 229.74 425.46 120.08 395.1 TRUE FALSE 257.8711246 416.7867475 373.8884221 496.2608556 427.2516522 305.9425224 273.3319657 389.3145174 131.6142205 314.5784031 0.819735627 1.324905789 1.188538114 1.577542675 1.358172233 0.972547763 0.868883442 1.237575477 0.418382887 1 8.297275818 -7.366987789 4.874663328 0.90440799 1.271149164 0.318932981 0.259585133 0.286147749 10.64193956 0.092163379 0.080789072 4.30E-08 7.366987789 0.366741174 TVTCVTVVEPEAPPS(ph)PDVLQAATHR ddPTM_K562_Paclitaxel_30min_R1 4 TVTCVTVVEPEAPPSPDVLQAATHR 25 0 A0A0J9YX88;E9PJ24;B7ZM65;F8WEF5;A0A0J9YYB5;A0A0J9YWD5;Q9P1Y6-2;Q9P1Y6-3;Q9P1Y6 A0A0J9YX88 PHRF1 PHD and RING finger domain-containing protein 1 1 TVTCVTVVEPEAPPS(1)PDVLQAATHR;TVTCVTVVEPEAPPS(1)PDVLQAATHR;TVTCVTVVEPEAPPS(0.999)PDVLQAAT(0.001)HR;TVTCVTVVEPEAPPS(1)PDVLQAATHR 185.44 1.37E-31 1019552000 5780.38 5722.3 7517.5 6732.3 5613.26 5282.52 5782.54 6617.44 6571.6 7837.9 TRUE FALSE 5861.323154 6347.080066 5619.61415 6300.520411 6377.881045 6219.300752 6879.746778 6055.247167 7202.831543 6240.531678 0.939234581 1.017073607 0.900502464 1.00961276 1.022009241 0.996597898 1.10242959 0.970309499 1.154201583 1 12.60745323 -6.904939537 1.117616002 1.051730524 0.958398687 0.316674795 0.057491138 0.589573323 1.567821862 0.024535948 0.031401562 1.24E-07 6.904939537 -0.093331837 TVTLELLDNGAGADAT(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 TVTLELLDNGAGADATK 17 0 A8K7I4 A8K7I4 CLCA1 Calcium-activated chloride channel regulator 1 1 TVTLELLDNGAGADAT(1)K 141.65 2.30E-08 34422000 2309 1983.4 2166.6 2233.7 1835.3 1938.8 2261.5 2725.4 2267 3152.6 TRUE FALSE 2341.333124 2199.954319 1619.615034 2090.44048 2085.298932 2282.618958 2690.607819 2493.860259 2484.755479 2510.09839 0.932765478 0.876441469 0.645239661 0.832812167 0.830763822 0.909374297 1.071913289 0.993530879 0.989903619 1 11.2935282 -7.481119877 3.032517535 1.012996036 0.817137972 0.602717087 0.072314101 0.188380912 3.473156552 0.030296502 0.024725986 3.30E-08 7.481119877 -0.195858064 TVTLPHEAERPDGSEDAEDDDDDDALSDWNLR ddPTM_K562_Paclitaxel_30min_R1 1 TVTLPHEAERPDGSEDAEDDDDDDALSDWNLR 32 1 A0A075B780;O14787-2;O14787 A0A075B780 TNPO2 Transportin-2 0 130.78 1.84E-24 13838000 411.48 411.79 482.36 334.56 277.76 339.88 351.21 422.69 362.48 502.67 FALSE TRUE 417.2419895 456.7506248 360.5822522 313.102819 315.5956145 400.1529458 417.8502641 386.7798462 397.2978236 400.2255781 1.042517051 1.141232969 0.900947546 0.782315864 0.78854434 0.999818522 1.044036881 0.966404616 0.992684739 1 8.644669561 -10.39144709 16.58335575 1.000004063 0.95878848 0.010420863 0.106735845 0 0 0.116510326 0.028257905 4.06E-11 10.39144709 -0.041215583 TVTNAVVTVPAYFNDSQR ddPTM_K562_Paclitaxel_30min_R1 1 TVTNAVVTVPAYFNDSQR 18 0 P11142-2;P11142;E9PN89;E9PQQ4;E9PQK7;E9PK54;E9PLF4;E9PI65 P11142-2 HSPA8 Heat shock cognate 71 kDa protein 0 101.36 0.0027195 0 471.31 591.28 762.6 771.4 503.42 323.9 453.86 555.71 656.33 764.47 FALSE TRUE 477.9097941 655.83795 570.0721983 721.9258567 571.994327 381.3391172 539.9775657 508.4989669 719.3734291 608.6705944 0.785169842 1.077492417 0.936585739 1.186069876 0.939743652 0.626511484 0.887142521 0.835425551 1.18187643 1 9.249517859 -5.222003973 22.20747544 0.950750661 0.785168096 0.097938572 0.158139797 14117.93977 7949628.401 0.04112219 9.307968305 6.00E-06 5.222003973 -0.165582564 TVVT(ph)PLDMNR ddPTM_K562_Paclitaxel_30min_R1 1 TVVTPLDMNR 10 0 A0A2R8YD63;Q92547 A0A2R8YD63 TOPBP1 DNA topoisomerase 2-binding protein 1 1 T(0.002)VVT(0.998)PLDMNR 98.898 0.025388 9462800 1342.8 1264.3 1534.7 1169.7 932.7 1112.3 1127.2 1162.9 1249.2 1475.3 TRUE FALSE 1361.603343 1402.34055 1147.246004 1094.680677 1059.749531 1309.550788 1341.080316 1064.104386 1369.191242 1174.63305 1.159173363 1.193854157 0.976684594 0.931934171 0.902196248 1.114859477 1.1417015 0.905903666 1.165633166 1 10.19799442 -5.756960047 24.99712992 1.014761908 1.176513821 0.328990033 0.09085488 126.5040065 705936.7369 0.023903437 0.058882086 1.75E-06 5.756960047 0.161751913 TYFPHFDLHPGS(ph)AQLR ddPTM_K562_Paclitaxel_30min_R1 2 TYFPHFDLHPGSAQLR 16 0 P02008 P02008 HBZ Hemoglobin subunit zeta 1 TYFPHFDLHPGS(1)AQLR;TYFPHFDLHPGS(1)AQLR 123.42 6.97E-05 23397000 2772.3 3825.4 3642 3547.7 3676.3 3597.2 3081.7 4091.1 3233.8 4338.3 TRUE FALSE 2811.120753 4243.070109 2722.532056 3320.166401 4177.0743 4235.112913 3666.436487 3743.535519 3544.420939 3454.152079 0.813838155 1.228397017 0.788191138 0.961210255 1.209290791 1.226093356 1.061457748 1.083778431 1.026133435 1 11.75411589 -6.699191649 11.79483465 1.109546609 0.956344754 0.248673882 0.129647453 1.001832334 186.6189716 0.037704514 0.048665172 2.00E-07 6.699191649 -0.153201856 TYFPHFDLHPGSAQLR ddPTM_K562_Paclitaxel_30min_R1 2 TYFPHFDLHPGSAQLR 16 0 P02008 P02008 HBZ Hemoglobin subunit zeta 0 ; 159.41 2.44E-08 207820000 6488.7 6977.9 8079.9 8013 8614.4 6430.4 7256.9 10441.6 8872.2 9705.2 FALSE TRUE 6579.561819 7739.77072 6040.029314 7499.082045 9787.827123 7570.741153 8633.858891 9554.520906 9724.414452 7727.274913 0.851472465 1.001617104 0.781650631 0.970469167 1.266659622 0.979742696 1.117322599 1.236467062 1.258453279 1 12.91574401 -6.575789686 6.50294138 1.144527582 0.888012875 0.568988273 0.105266278 0.145641737 13.36580853 0.031088383 0.040456851 2.66E-07 6.575789686 -0.256514707 TYQVTPMT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 TYQVTPMTPR 10 0 Q15398;Q15398-1;Q15398-3 Q15398 DLGAP5 Disks large-associated protein 5 1 TYQVT(0.002)PMT(0.998)PR 101.71 0.02131 15392000 1532.1 1099.1 1079.9 997.51 835.76 797.64 1134.1 1215.3 1239.5 1720 TRUE FALSE 1553.554127 1219.103455 807.265889 933.5341733 949.6046615 939.0902546 1349.289555 1112.052679 1358.559513 1369.463056 1.13442573 0.890205435 0.589476208 0.681678976 0.693413858 0.6857361 0.985269043 0.812035545 0.992038089 1 10.41939463 -7.767398805 24.99229512 0.931671976 0.767253789 0.225810143 0.150484578 251.2280649 1053572.889 0.066266483 0.046002504 1.71E-08 7.767398805 -0.164418187 TYS(ph)APAINAIQGGSFESPKK ddPTM_K562_Paclitaxel_30min_R1 2 TYSAPAINAIQGGSFESPKK 20 1 Q9H4L5-5;Q9H4L5;Q9H4L5-7;Q9H4L5-3 Q9H4L5-5 OSBPL3 Oxysterol-binding protein-related protein 3 1 T(0.351)Y(0.022)S(0.627)APAINAIQGGSFESPKK;T(0.493)Y(0.004)S(0.503)APAINAIQGGSFESPKK 111.65 0.00010785 28567000 2968.1 1936.11 4824.3 2501 2033.4 1336.27 1717.65 2602.9 1891.62 4410.1 TRUE FALSE 3009.662557 2147.501037 3606.345799 2340.597054 2310.383506 1573.238722 2043.565121 2381.767398 2073.318553 3511.319199 0.857131576 0.611593796 1.027062934 0.666586238 0.657981623 0.448047766 0.581993549 0.678311274 0.590467125 1 11.77779744 -6.496444259 24.0303775 0.63196925 0.816050698 0.176043712 0.162583639 686.7226097 624267.3011 0.043673246 0.064504422 3.19E-07 6.496444259 0.184081448 TYS(ph)ECEDGTYSPEISWHHR ddPTM_K562_Paclitaxel_30min_R1 1 TYSECEDGTYSPEISWHHR 19 0 P48651;P48651-2;P48651-3 P48651 PTDSS1 Phosphatidylserine synthase 1 1 T(0.123)YS(0.877)ECEDGTYSPEISWHHR 143.4 8.71E-13 66790000 417.31 381.38 363.56 474.39 263.62 299.02 392.04 473.35 331.86 559.9 TRUE FALSE 423.1536275 423.0203581 271.7747815 443.9647487 299.5295071 352.0469986 466.4275434 433.1359629 363.7366358 445.7920727 0.949217479 0.94891853 0.609644716 0.99590095 0.671904068 0.789711213 1.046289452 0.971609837 0.815933387 1 8.800227152 -7.745686205 24.97870391 0.95609234 0.823739038 0.202995444 0.126906012 389.7595645 618014.7981 0.048244731 0.037241763 1.80E-08 7.745686205 -0.132353302 TYS(ph)SPGSFK ddPTM_K562_Paclitaxel_30min_R1 1 TYSSPGSFK 9 0 Q8N3Z6 Q8N3Z6 ZCCHC7 Zinc finger CCHC domain-containing protein 7 1 T(0.028)YS(0.49)S(0.454)PGS(0.028)FK 86.344 0.023307 31061000 5093.2 4448.1 8536 5439.2 4112.9 3988.7 3486.7 5403.2 4579.4 6298.7 TRUE FALSE 5164.520514 4933.758601 6380.981228 5090.354057 4673.146612 4696.039941 4148.283123 4944.164434 5019.271831 5015.021483 1.029810247 0.983796105 1.272373658 1.015021386 0.931829829 0.936394781 0.827171556 0.985871038 1.000847524 1 12.29204017 -6.520185674 14.34462581 0.942838177 1.094092731 0.386628091 0.083730243 0.477930582 2520.33544 0.025051845 0.033560126 3.02E-07 6.520185674 0.151254555 TYSECEDGT(ph)YSPEISWHHR ddPTM_K562_Paclitaxel_30min_R1 1 TYSECEDGTYSPEISWHHR 19 0 P48651;P48651-2;P48651-3 P48651 PTDSS1 Phosphatidylserine synthase 1 1 TYSECEDGT(0.74)Y(0.211)S(0.049)PEISWHHR 97.689 0.0012352 25938000 3166.9 2861.7 3825.7 3533.2 2977.7 3193.3 3065.9 3520.9 2392.7 3792.6 TRUE FALSE 3211.246371 3174.150084 2859.854719 3306.596366 3383.313153 3759.586919 3647.63852 3221.777568 2622.529526 3019.666038 1.063444212 1.051159315 0.947076492 1.09502055 1.120426269 1.245034011 1.207960905 1.066931749 0.8684833 1 11.56017329 -8.625777192 6.096546633 0.937370513 1.104224792 0.393973978 0.083026182 0.237054029 11.92156523 0.0657331 0.023967765 2.37E-09 8.625777192 0.166854279 TYSECEDGTYS(ph)PEISWHHR ddPTM_K562_Paclitaxel_30min_R1 2 TYSECEDGTYSPEISWHHR 19 0 P48651;P48651-2;P48651-3 P48651 PTDSS1 Phosphatidylserine synthase 1 1 TYSECEDGT(0.065)Y(0.045)S(0.889)PEIS(0.001)WHHR;TYS(0.001)ECEDGT(0.027)Y(0.006)S(0.809)PEIS(0.157)WHHR 96.881 0.00070203 46354000 3553.5 3328.1 4169.2 4224.1 3287.1 3270.3 3475.8 3815.1 2938 4593.4 TRUE FALSE 3603.259963 3691.473213 3116.633896 3953.185132 3734.858671 3850.241788 4135.314905 3490.983442 3220.208027 3657.262559 0.985234149 1.00935417 0.852176688 1.08091368 1.021216993 1.052766031 1.13071316 0.954534542 0.880496813 1 11.83654849 -4.941573633 13.11068651 1.000983609 0.893350782 0.001042129 0.080745587 3236889.068 22999778.09 0.020938784 8694357.056 1.14E-05 4.941573633 -0.107632826 TYSECEDGTYS(ph)PEISWHHRK ddPTM_K562_Paclitaxel_30min_R1 1 TYSECEDGTYSPEISWHHRK 20 1 P48651;P48651-2;P48651-3 P48651 PTDSS1 Phosphatidylserine synthase 1 1 TYSECEDGT(0.031)Y(0.387)S(0.464)PEIS(0.117)WHHRK 54.288 0.019867 17950000 776.36 695.07 1080.5 799.55 626.66 657.41 638.63 794.11 562.82 981.52 TRUE FALSE 787.2314353 770.9600932 807.7144115 748.2704417 712.0217014 773.992433 759.8067086 726.6453988 616.8813757 781.4856852 1.007352342 0.986531305 1.033562645 0.95749731 0.911112916 0.99041153 0.972259279 0.929825603 0.789370026 1 9.610075637 -6.966704567 0.617203618 0.912389817 1.012457745 0.242049816 0.057357712 1.293996742 1.077395032 0.043351216 0.065676859 1.08E-07 6.966704567 0.100067928 TYSLS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 TYSLSPR 7 0 A0A6E1WJ75;Q86U70-3;Q86U70-2;Q86U70 A0A6E1WJ75 LDB1 LIM domain-binding protein 1 1 TYSLS(1)PR 95.815 0.013908 48425000 2261 2538.9 3059.8 2891.9 2544 2032.9 2305.7 2647.5 2228.3 3190.5 TRUE FALSE 2292.660976 2816.105688 2287.315647 2706.426478 2890.53587 2393.406272 2743.194538 2422.57835 2442.338171 2540.274349 0.902524949 1.108583287 0.900420716 1.065407159 1.137883344 0.942184167 1.07988121 0.953667997 0.961446614 1 11.3107686 -10.75751201 9.62829627 0.999999999 1.010118418 0 0.082294287 0 0 0.075873888 0.018402121 1.75E-11 10.75751201 0.010118419 VAAAAGS(ph)GPSPPGSPGHDRER ddPTM_K562_Paclitaxel_30min_R1 2 VAAAAGSGPSPPGSPGHDRER 21 1 Q9BTU6 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha 1 VAAAAGS(0.463)GPS(0.097)PPGS(0.44)PGHDRER;VAAAAGS(0.617)GPS(0.382)PPGS(0.001)PGHDRER 78.848 0.0019 15733100 1222.83 1164.17 1431.93 1218.39 1114.23 1164.55 1119.76 1214.02 1094.36 1106.11 TRUE FALSE 1239.953393 1291.278018 1070.421562 1140.247919 1266.00699 1371.066591 1332.228614 1110.881423 1199.478168 880.6841748 1.407943311 1.466221438 1.215443166 1.294729656 1.437526671 1.556819835 1.512720056 1.261384563 1.361984468 1 9.782480932 -9.463372327 1.220375398 1.000703751 1.401842987 0.571935826 0.102495103 1.494191035 3.09323218 0.108205311 0.032789734 3.44E-10 9.463372327 0.401139236 VAAAAGSGPS(ph)PPGS(ph)PGHDR ddPTM_K562_Paclitaxel_30min_R1 2 VAAAAGSGPSPPGSPGHDR 19 0 Q9BTU6 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha 2 VAAAAGS(0.015)GPS(0.985)PPGS(1)PGHDR;VAAAAGS(0.422)GPS(0.673)PPGS(0.906)PGHDR 138.28 6.09E-10 19697400 5780 5997.9 6277.9 6376.7 5486.9 5455 5399.1 6885.8 5079.2 6889 TRUE FALSE 5860.937833 6652.771006 4692.966501 5967.727003 6234.308674 6422.367658 6423.55104 6300.80831 5567.079854 5485.018019 1.068535748 1.21289866 0.855597281 1.088004995 1.136606781 1.170892718 1.171108466 1.148730649 1.014961088 1 12.42128064 VAAAAGSGPS(ph)PPGS(ph)PGHDRER ddPTM_K562_Paclitaxel_30min_R1 4 VAAAAGSGPSPPGSPGHDRER 21 1 Q9BTU6 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha 2 VAAAAGS(0.131)GPS(0.869)PPGS(1)PGHDRER;VAAAAGS(0.025)GPS(0.975)PPGS(1)PGHDRER;VAAAAGS(0.004)GPS(0.996)PPGS(1)PGHDRER;VAAAAGS(0.006)GPS(0.994)PPGS(1)PGHDRER 199.31 5.21E-25 186241500 7841.1 7159.2 9713.7 8366.5 7355.9 7038.5 6973.8 8480.7 7263.7 9218.4 TRUE FALSE 7950.899592 7940.865667 7261.356297 7829.910137 8357.898116 8286.67915 8297.042144 7760.2116 7961.41084 7339.68502 1.083275314 1.081908235 0.989328054 1.066791029 1.138727083 1.129023811 1.130435723 1.057294908 1.084707425 1 12.84150244 -5.538378183 24.85821296 1.079414458 1.082933747 0 0.048663353 5574.442611 8940304.111 0.013278604 0.03513198 2.89E-06 5.538378183 0.003519289 VAAAAGSGPS(ph)PPGSPGHDR ddPTM_K562_Paclitaxel_30min_R1 1 VAAAAGSGPSPPGSPGHDR 19 0 Q9BTU6 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha 1 VAAAAGS(0.002)GPS(0.996)PPGS(0.002)PGHDR 92.289 0.001073 19147000 657.67 913.51 975.05 936.11 786.36 557.36 598.36 788.69 676.15 899.53 TRUE FALSE 666.8794091 1013.250111 728.8865682 876.0720945 893.4755452 656.1999703 711.8956864 721.6858617 741.0972286 716.2052922 0.931128849 1.414748148 1.017706203 1.223213657 1.247513185 0.916217707 0.993982723 1.007652233 1.034755309 1 9.484229369 -7.260880641 24.99994506 0.991216178 1.175477675 0.329838498 0.125376146 57.46462347 2571214.616 0.039983099 0.037677425 5.48E-08 7.260880641 0.184261497 VAAAAGSGPS(ph)PPGSPGHDRER ddPTM_K562_Paclitaxel_30min_R1 1 VAAAAGSGPSPPGSPGHDRER 21 1 Q9BTU6 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha 1 VAAAAGS(0.022)GPS(0.975)PPGS(0.003)PGHDRER 57.788 0.017811 7552600 1379.8 1125.1 1548.9 1527.8 1732.7 1420.6 1178.4 1716 1683.5 1873.6 TRUE FALSE 1399.121457 1247.942223 1157.861038 1429.813746 1968.723075 1672.523464 1401.995248 1570.215089 1845.207697 1491.759292 0.93790028 0.836557365 0.776171494 0.958474839 1.319732403 1.121175161 0.939826724 1.0525928 1.236933939 1 10.54279905 -6.528908619 24.9841336 1.109208434 0.851924237 0.543851876 0.108612073 120.3968725 498848.4242 0.033246449 0.043043461 2.96E-07 6.528908619 -0.257284196 VAAAAGSGPSPPGS(ph)PGHDRER ddPTM_K562_Paclitaxel_30min_R1 1 VAAAAGSGPSPPGSPGHDRER 21 1 Q9BTU6 Q9BTU6 PI4K2A Phosphatidylinositol 4-kinase type 2-alpha 1 VAAAAGSGPSPPGS(1)PGHDRER 120.44 7.35E-07 0 360.91 490.52 668.54 329.19 623.96 516.76 365.9 362.19 302.08 522.24 TRUE FALSE 365.9638535 544.0766324 499.7588086 308.0772268 708.9539157 608.4001303 435.3276149 331.4196988 331.0961337 415.8072013 0.880128705 1.308482948 1.201900321 0.740913639 1.705006343 1.463178436 1.046945828 0.797051368 0.796273207 1 8.699770934 -8.010231729 6.527142848 0.859889903 1.22388566 0.269999182 0.259932783 0.206672027 41.42617547 0.121588636 0.075171101 9.77E-09 8.010231729 0.363995757 VACEGVNNDPDESMSSRIS(ph)DTER ddPTM_K562_Paclitaxel_30min_R1 1 VACEGVNNDPDESMSSRISDTER 23 1 A0A0G2JN16;A0A0A0MRX7;A0A0G2JNU3;A6H8Y1-4;A6H8Y1-3;A6H8Y1-2;A6H8Y1-7;A6H8Y1-6;A6H8Y1 A0A0G2JN16 BDP1 Transcription factor TFIIIB component B homolog 1 VACEGVNNDPDES(0.006)MS(0.114)S(0.114)RIS(0.724)DT(0.041)ER 82.593 0.00042791 9027900 890.93 562.98 1067.8 886.76 754.12 785.38 449.78 920.29 783.76 657.76 TRUE FALSE 903.4057688 624.4480603 798.2206836 829.8871826 856.8439114 924.6561157 535.123407 842.1056202 859.0436499 523.7081509 1.725017583 1.192358872 1.524170823 1.584636751 1.636109558 1.76559428 1.02179698 1.607967374 1.640309872 1 9.032619249 -10.95721834 6.006572981 0.999999721 1.512544733 0.328978962 0.223284847 8.25E-07 1.43E-07 0.213423738 0.051762832 1.10E-11 10.95721834 0.512545012 VADAKGDS(ph)ES(ph)EEDEDLEVPVPSR ddPTM_K562_Paclitaxel_30min_R1 2 VADAKGDSESEEDEDLEVPVPSR 23 1 P13861-2;P13861 P13861-2 PRKAR2A cAMP-dependent protein kinase type II-alpha regulatory subunit 2 VADAKGDS(1)ES(1)EEDEDLEVPVPSR;VADAKGDS(1)ES(1)EEDEDLEVPVPSR 82.942 0.00061259 127144000 7471.1 5902.8 13734 7646.7 6005.9 5118.1 4915.5 7735.3 6432.8 10148.7 TRUE FALSE 7575.71845 6547.287666 10266.68184 7156.274887 6824.005261 6025.723173 5848.190464 7078.137983 7050.699183 8080.389369 0.937543738 0.810268833 1.270567713 0.885634907 0.84451441 0.745721883 0.723751072 0.875964964 0.872569236 1 12.9802091 -6.509957683 24.83085435 0.830143242 1.00180102 0.239173512 0.128239158 765.0817723 1470285.22 0.036963639 0.052017984 3.09E-07 6.509957683 0.171657778 VADNS(ph)FDAK ddPTM_K562_Paclitaxel_30min_R1 2 VADNSFDAK 9 0 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 1 VADNS(1)FDAK;VADNS(1)FDAK 121.21 0.0025328 247490000 10744.6 8347.8 17593.5 10510.6 8646.2 6810.9 6824.3 10765.7 10004.7 12523 TRUE FALSE 10895.05755 9259.241034 13151.80333 9836.49716 9823.958821 8018.717485 8119.1753 9851.086588 10965.69614 9970.805726 1.092695801 0.928635186 1.319031149 0.986529818 0.985272313 0.804219609 0.814294805 0.987993033 1.099780343 1 13.28349438 -6.506594173 24.13883175 0.938772227 1.104606885 0.270721565 0.120391907 624.2903792 925393.5681 0.035523848 0.051043949 3.11E-07 6.506594173 0.165834657 VADPDHDHTGFLTEY(ph)VATR ddPTM_K562_Paclitaxel_30min_R1 2 VADPDHDHTGFLTEYVATR 19 0 P28482-2;P28482 P28482-2 MAPK1 Mitogen-activated protein kinase 1 1 VADPDHDHTGFLTEY(1)VATR;VADPDHDHTGFLTEY(1)VATR 187 1.22E-16 172175000 9294.5 7312.8 10628.7 7988.4 7803.5 6690.8 5977.8 9449.3 4022.8 11762.3 TRUE FALSE 9424.651676 8111.236234 7945.353231 7476.059779 8866.468814 7877.319437 7112.056344 8646.522984 4409.207914 9365.136804 1.006354939 0.866109743 0.848396921 0.798286233 0.946752728 0.84113234 0.759418308 0.923267131 0.470810839 1 13.19308435 -7.558977709 5.273902227 0.783121231 0.88498538 0.110556624 0.138775537 0.438870686 30.84614077 0.050782628 0.039674003 2.76E-08 7.558977709 0.101864149 VADPDHDHTGFLTEYVATR ddPTM_K562_Paclitaxel_30min_R1 1 VADPDHDHTGFLTEYVATR 19 0 P28482-2;P28482 P28482-2 MAPK1 Mitogen-activated protein kinase 1 0 92.096 0.0011944 43504000 2836.5 2764.5 3652.3 2944.6 2839.3 2800.2 2527.8 3581.9 3379.4 3508.2 FALSE TRUE 2876.219751 3066.337459 2730.231694 2755.746536 3226.06073 3296.776153 3007.436854 3277.595237 3704.00647 2793.226914 1.029712171 1.097775996 0.977447153 0.986581692 1.154958343 1.180275092 1.076689058 1.173408154 1.326067156 1 11.44771706 -6.772929446 24.46142217 1.158228327 1.024983876 0.363055273 0.083449045 181.0745152 385491.654 0.025671693 0.029367213 1.69E-07 6.772929446 -0.133244451 VAELALSLSST(ph)SDDEPPSSVSHGAK ddPTM_K562_Paclitaxel_30min_R1 1 VAELALSLSSTSDDEPPSSVSHGAK 25 0 Q8N1G2;Q5T7F5 Q8N1G2 CMTR1 Cap-specific mRNA (nucleoside-2-O-)-methyltransferase 1 1 VAELALS(0.003)LS(0.015)S(0.115)T(0.717)S(0.15)DDEPPSSVSHGAK 165.66 5.70E-26 33022000 2933.1 2601 5320.3 3483.9 2844.5 2112 2344.7 3228.9 2801.3 4008.3 TRUE FALSE 2974.172449 2884.985976 3977.124464 3260.458247 3231.969058 2486.533546 2789.594585 2954.584791 3070.377382 3191.40626 0.931931634 0.903985811 1.246198115 1.021636853 1.012710008 0.779134132 0.87409573 0.925794008 0.962076631 1 11.63997656 -7.033216731 23.66645988 0.900835255 1.030986787 0.243572825 0.101033542 468.4952562 333795.1504 0.034701314 0.034732735 9.26E-08 7.033216731 0.130151532 VAEPGAEAT(ph)SSTGEESGSEHPPAVPMHNK ddPTM_K562_Paclitaxel_30min_R1 1 VAEPGAEATSSTGEESGSEHPPAVPMHNK 29 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 VAEPGAEAT(0.291)S(0.291)S(0.068)T(0.068)GEES(0.228)GS(0.054)EHPPAVPMHNK 58.272 0.0025755 9535000 1100.2 790.23 1904.7 1267.4 1154 752.4 893.55 987.86 1175.3 1448.3 TRUE FALSE 1115.606194 876.5099838 1423.834928 1186.114637 1311.194337 885.8275758 1063.096448 903.935127 1288.192816 1153.135665 0.967454419 0.760110029 1.234750577 1.028599386 1.137068584 0.768190251 0.921917932 0.783893131 1.11712165 1 10.17134654 -7.254711668 24.78943288 0.904948747 1.022633823 0.113548052 0.147575517 1048.699033 3864118.986 0.049468539 0.048408024 5.56E-08 7.254711668 0.117685075 VAEPGAEATS(ph)STGEESGSEHPPAVPMHNK ddPTM_K562_Paclitaxel_30min_R1 1 VAEPGAEATSSTGEESGSEHPPAVPMHNK 29 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 VAEPGAEAT(0.067)S(0.212)S(0.18)T(0.18)GEES(0.18)GS(0.18)EHPPAVPMHNK 52.849 0.0061872 25363000 1566.1 1297 2501 1752.8 1367.7 1242.3 1072.6 1729.1 1668.3 2400.7 TRUE FALSE 1588.030232 1438.610846 1869.591618 1640.383253 1554.003895 1462.604462 1276.120251 1582.202162 1828.547669 1911.436022 0.830804805 0.752633533 0.978108394 0.858194171 0.813003353 0.765186198 0.667623837 0.827755752 0.95663556 1 10.9004412 -8.802132218 3.834687319 0.99394908 0.809605604 0.444719926 0.075356737 0.217077628 6.218132235 0.076014607 0.020952392 1.58E-09 8.802132218 -0.184343476 VAEPGAEATS(ph)STGEESGSEHPPAVPMHNKR ddPTM_K562_Paclitaxel_30min_R1 1 VAEPGAEATSSTGEESGSEHPPAVPMHNKR 30 1 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 VAEPGAEAT(0.039)S(0.378)S(0.378)T(0.127)GEES(0.039)GS(0.039)EHPPAVPMHNKR 50.869 0.003825 90488000 1708.8 1290.8 2873.8 1812.6 1361.2 1094.2 698.35 1628.3 1881.7 1539.2 TRUE FALSE 1732.728472 1431.733909 2148.273647 1696.347949 1546.618485 1288.241007 830.8582669 1489.965751 2062.445693 1225.510195 1.41388336 1.168275805 1.752962689 1.384197337 1.262020089 1.051187507 0.677969282 1.215792212 1.682928221 1 10.25916677 -6.923525775 3.058770863 1.113709564 1.435121742 0.221941404 0.267737579 0.413742775 7.831577784 0.093872302 0.106824517 1.19E-07 6.923525775 0.321412178 VAEPGAEATSSTGEES(ph)GSEHPPAVPMHNKR ddPTM_K562_Paclitaxel_30min_R1 4 VAEPGAEATSSTGEESGSEHPPAVPMHNKR 30 1 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 VAEPGAEAT(0.001)S(0.004)S(0.003)T(0.011)GEES(0.491)GS(0.491)EHPPAVPMHNKR;VAEPGAEAT(0.002)S(0.006)S(0.019)T(0.056)GEES(0.458)GS(0.458)EHPPAVPMHNKR;VAEPGAEAT(0.003)S(0.037)S(0.031)T(0.009)GEES(0.46)GS(0.46)EHPPAVPMHNKR;VAEPGAEAT(0.022)S(0.065)S(0.204)T(0.229)GEES(0.24)GS(0.24)EHPPAVPMHNKR 78.451 1.52E-05 213105000 8452.2 7573.5 13795.9 9754.3 7412.54 6848.9 6247.17 9260 10750.9 10676.1 TRUE FALSE 8570.556877 8400.400342 10312.95442 9128.702857 8422.253443 8063.456252 7432.537895 8473.305201 11783.57198 8500.30496 1.008264635 0.988246937 1.213245227 1.073926512 0.990817798 0.948607878 0.874384852 0.996823672 1.386252851 1 13.05329889 -11.22516818 3.692691743 0.999938817 1.044934234 0.009816115 0.139224539 146827004.8 76578170.1 85225.78404 0.03558546 5.95E-12 11.22516818 0.044995417 VAESAQS(ph)PAAAHTTDTAGYNAMEESVSR ddPTM_K562_Paclitaxel_30min_R1 3 VAESAQSPAAAHTTDTAGYNAMEESVSR 28 0 P38398-8;P38398-4;P38398;P38398-7;K7EPC7;H0Y8B8;B7ZA85;E7EUM2;A0A2R8Y7V5;P38398-6;P38398-5;P38398-3 P38398-8 BRCA1 Breast cancer type 1 susceptibility protein 1 VAES(0.016)AQS(0.983)PAAAHT(0.001)TDTAGYNAMEESVSR;VAES(0.07)AQS(0.93)PAAAHTTDTAGYNAMEESVSR;VAES(0.008)AQS(0.992)PAAAHTTDTAGYNAMEESVSR 159.36 4.33E-35 106794900 3147.87 2627.68 3262.93 3345.37 3117.96 2527.46 2646.57 3409.18 3177.92 3990.4 TRUE FALSE 3191.949892 2914.578989 2439.162966 3130.812942 3542.678939 2975.669544 3148.742841 3119.54888 3483.173415 3177.15429 1.004656872 0.917355194 0.767719394 0.985414197 1.115047812 0.936583267 0.99105758 0.981868866 1.096318623 1 11.63351944 -6.504504831 24.91284487 1.016936374 0.894973585 0.364031903 0.073003623 789.036186 1069839.68 0.020890508 0.030342447 3.13E-07 6.504504831 -0.121962789 VAFISLS(ph)PVR ddPTM_K562_Paclitaxel_30min_R1 1 VAFISLSPVR 10 0 Q6ZU65-2;Q6ZU65 Q6ZU65-2 UBN2 Ubinuclein-2 1 VAFIS(0.019)LS(0.981)PVR 113.38 0.0044956 17086000 1302.4 1181.1 1488.3 1150.8 892.59 1137.9 1735.1 2203.9 1414.3 2107.2 TRUE FALSE 1320.637618 1310.056492 1112.560258 1076.992839 1014.17587 1339.690588 2064.326167 2016.664939 1550.149834 1677.751483 0.787147341 0.78084061 0.663125778 0.641926322 0.604485158 0.798503593 1.230412363 1.202004563 0.923944845 1 10.71231332 -7.624679153 5.21375124 1.103595882 0.696064766 0.77975755 0.098967274 0.095346593 4.077637995 0.04005271 0.03068167 2.37E-08 7.624679153 -0.407531116 VAGEAAET(ph)DS(ph)EPEPEPEPTAAPR ddPTM_K562_Paclitaxel_30min_R1 1 VAGEAAETDSEPEPEPEPTAAPR 23 0 Q6QNY0 Q6QNY0 BLOC1S3 Biogenesis of lysosome-related organelles complex 1 subunit 3 2 VAGEAAET(1)DS(1)EPEPEPEPTAAPR 100.7 0.00020428 12476000 993.94 949.69 1203.6 1195.8 815.11 922.23 819.46 1075.2 1018.7 1195.7 TRUE FALSE 1007.858227 1053.380366 899.7362941 1119.10674 926.1417819 1085.774542 974.9482571 983.8550488 1116.550687 952.0156837 1.058657167 1.106473752 0.945085579 1.175512924 0.97282198 1.140500688 1.024088441 1.03344416 1.172828038 1 9.894841531 -6.255404381 24.99741197 1.072018498 1.043712342 0.045291729 0.076331473 2208.390189 9147332.279 0.019590147 0.032911416 5.55E-07 6.255404381 -0.028306155 VAIPASVLPGPEEPGGQRQEASTGQSPEDHAS(ph)LAPPLSPDHSSLEAK ddPTM_K562_Paclitaxel_30min_R1 1 VAIPASVLPGPEEPGGQRQEASTGQSPEDHASLAPPLSPDHSSLEAK 47 1 P48681 P48681 NES Nestin 1 VAIPASVLPGPEEPGGQRQEAS(0.132)T(0.132)GQS(0.132)PEDHAS(0.4)LAPPLS(0.149)PDHS(0.025)S(0.028)LEAK 49.385 9.15E-06 42497000 2260.2 2470.6 4691.5 2593.1 1932.7 2052.7 1948.8 2569.3 2508.6 3546.4 TRUE FALSE 2291.849773 2740.348463 3507.072801 2426.790172 2195.966461 2416.717524 2318.574627 2351.021928 2749.562239 2823.641733 0.811664506 0.970501474 1.242038875 0.859453996 0.777707184 0.855886742 0.821129182 0.832620477 0.973764556 1 11.46334133 -6.422342866 22.77401162 0.860313081 1.012053428 0.209425448 0.116750811 26.87860551 6080.338289 0.033066791 0.04904595 3.78E-07 6.422342866 0.151740347 VAPGPSSGSTPGQVPGSSALS(ph)SPRR ddPTM_K562_Paclitaxel_30min_R1 2 VAPGPSSGSTPGQVPGSSALSSPRR 25 1 Q8NEY1-2;Q8NEY1-3;Q8NEY1;A0A0A0MRJ3;Q8NEY1-5;Q8NEY1-7;Q8NEY1-4 Q8NEY1-2 NAV1 Neuron navigator 1 1 VAPGPSSGSTPGQVPGS(0.099)S(0.099)ALS(0.453)S(0.349)PRR;VAPGPSSGSTPGQVPGS(0.191)S(0.145)ALS(0.388)S(0.275)PRR 114.84 3.57E-08 54338000 2111.37 2417.12 3104.1 2455.3 2230.7 2371.7 2033 2528.2 2550.62 2759.8 TRUE FALSE 2140.935694 2681.029336 2320.431564 2297.828048 2534.559106 2792.287695 2418.751137 2313.413629 2795.618447 2197.351245 0.974325656 1.220118696 1.056013038 1.045726327 1.153461064 1.270751638 1.100757625 1.052819223 1.272267442 1 11.10154979 -6.780723878 24.7051329 1.148724994 1.083191635 0.096785349 0.098253106 529.9928355 678963.977 0.029736737 0.033768794 1.66E-07 6.780723878 -0.065533359 VAPLWHS(ph)SSEVISMADR ddPTM_K562_Paclitaxel_30min_R1 1 VAPLWHSSSEVISMADR 17 0 O43166-3;O43166-2;O43166;F5GYF8 O43166-3 SIPA1L1 Signal-induced proliferation-associated 1-like protein 1 1 VAPLWHS(0.633)S(0.319)S(0.048)EVISMADR 142.72 8.80E-09 9378200 1659.5 1523.4 1808.6 1573.7 1421.5 1551.2 1616.2 1702.9 1733.2 2154.1 TRUE FALSE 1682.73812 1689.729964 1351.996562 1472.769926 1615.132366 1826.28354 1922.865513 1558.228016 1899.681604 1715.093238 0.981135068 0.985211723 0.788293331 0.858711289 0.941716946 1.064830471 1.121143429 0.908538371 1.107625849 1 10.74407129 -7.112397828 4.338820236 1.039117253 0.900836681 0.420998839 0.076730943 0.240758446 7.496682896 0.02678566 0.027052054 7.72E-08 7.112397828 -0.138280572 VAPVINNGS(ph)PTILGK ddPTM_K562_Paclitaxel_30min_R1 2 VAPVINNGSPTILGK 15 0 H0Y4T7;E7ESY4;Q13330-3;Q13330;F8W9Y9 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 VAPVINNGS(0.964)PT(0.036)ILGK;VAPVINNGS(0.989)PT(0.011)ILGK 151.38 2.58E-05 102790000 6878.5 5460.3 10731.7 7547.1 5199.1 4963.1 4862.7 7724.7 4151.6 8416.8 TRUE FALSE 6974.820222 6056.47402 8022.349607 7063.062786 5907.305441 5843.2361 5785.37194 7068.438519 4550.37973 6701.45154 1.040792458 0.90375555 1.197106263 1.053960137 0.881496405 0.871935888 0.863301317 1.054762312 0.679014047 1 12.7102579 -6.760167612 24.9816043 0.892076458 1.049121814 0.316535418 0.113127759 41.19025653 809094.9797 0.033035851 0.040315551 1.74E-07 6.760167612 0.157045356 VAPVINNGS(ph)PTILGKR ddPTM_K562_Paclitaxel_30min_R1 3 VAPVINNGSPTILGKR 16 1 H0Y4T7;E7ESY4;Q13330-3;Q13330;F8W9Y9 H0Y4T7 MTA1 Metastasis-associated protein MTA1 1 VAPVINNGS(0.632)PT(0.368)ILGKR;VAPVINNGS(0.749)PT(0.251)ILGKR;VAPVINNGS(0.784)PT(0.216)ILGKR 130.95 1.15E-06 292821000 7285 5938.5 11544.5 7984.6 6116.5 5915.1 5354.5 7667.5 8043.9 9339.8 TRUE FALSE 7387.012476 6586.885513 8629.948194 7472.503494 6949.670853 6964.059933 6370.488423 7016.098016 8816.552536 7436.343633 0.993366208 0.885769383 1.160509603 1.004862586 0.934554829 0.936489796 0.856669452 0.943487601 1.185603163 1 12.86037772 -8.739366051 24.93409855 1.092801668 0.964199445 0.252397919 0.088349164 281.359836 317826.9114 0.061547933 0.023221255 1.82E-09 8.739366051 -0.128602222 VAQAPS(ph)PCIAR ddPTM_K562_Paclitaxel_30min_R1 2 VAQAPSPCIAR 11 0 F5GXF9;P51825-3;P51825-2 F5GXF9 AFF1 AF4/FMR2 family member 1 1 VAQAPS(1)PCIAR;VAQAPS(1)PCIAR 111.72 0.005113 82556000 4965.9 4872.5 6898.4 5952 4832.5 5179.4 5003.8 5500.1 5147.8 6137.7 TRUE FALSE 5035.437921 5404.496028 5156.813602 5570.26536 5490.768315 6097.893868 5953.244928 5032.832174 5642.269191 4886.833371 1.030409171 1.105930081 1.055246457 1.139851707 1.123584108 1.247821115 1.218221387 1.029875953 1.154585958 1 12.2546842 -6.268301652 23.1573336 1.140055144 1.068068718 0.140487969 0.072785287 351.3162804 1185551.717 0.020633403 0.031441874 5.39E-07 6.268301652 -0.071986425 VAQRS(ph)PVDSGTILR ddPTM_K562_Paclitaxel_30min_R1 1 VAQRSPVDSGTILR 14 1 P49454 P49454 CENPF Centromere protein F 1 VAQRS(1)PVDSGTILR 107.46 0.011336 11107000 453.68 611.17 621.36 552.96 448.27 473.52 455.78 653.66 424.81 609.49 TRUE FALSE 460.0329197 677.8996074 464.4899831 517.4956206 509.3319633 557.4921234 542.2618757 598.127503 465.6148986 485.2756034 0.947982788 1.396937333 0.957167391 1.066395296 1.049572572 1.148815476 1.117430738 1.23255218 0.959485487 1 8.922660522 -8.791940892 24.91319145 0.979742441 1.116229379 0.158193642 0.124397025 399.1327855 325995.4218 0.113321586 0.029273746 1.61E-09 8.791940892 0.136486939 VAS(ph)GSDLHLTDIDSDSNR ddPTM_K562_Paclitaxel_30min_R1 1 VASGSDLHLTDIDSDSNR 18 0 A0A0D9SFK2;Q92614-3;Q92614-4;Q92614 A0A0D9SFK2 MYO18A Unconventional myosin-XVIIIa 1 VAS(0.5)GS(0.5)DLHLTDIDSDSNR 75.611 0.011485 44299000 937.26 917.84 1111.2 908.49 868.38 1213.8 1140 1395.6 664.84 1461.3 TRUE FALSE 950.3845317 1018.052875 830.6638169 850.2235177 986.6680578 1429.050387 1356.309049 1277.035069 728.7008526 1163.486258 0.816842077 0.875002062 0.713943814 0.730755101 0.848027255 1.228248617 1.165728464 1.097593599 0.626308087 1 10.18423846 -7.041646865 11.71231773 1.038587317 0.78606695 0.348388314 0.156268718 1.391090993 389.756967 0.053112163 0.053334942 9.09E-08 7.041646865 -0.252520367 VAS(ph)SPAPPEGPSHPREPSTPHR ddPTM_K562_Paclitaxel_30min_R1 1 VASSPAPPEGPSHPREPSTPHR 22 1 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 VAS(0.527)S(0.473)PAPPEGPSHPREPSTPHR 52.79 0.023509 15218000 1846.9 1662.1 2543.6 1877.4 1752.4 1842 1536.8 2086.5 1897.2 1781.9 TRUE FALSE 1872.762298 1843.573699 1901.436721 1756.991967 1991.106548 2168.652837 1828.399777 1909.238801 2079.434537 1418.747802 1.320010713 1.299437219 1.340221792 1.238410354 1.403425292 1.528568245 1.288741928 1.345721064 1.465683002 1 10.47040244 -11.07423355 4.569570813 0.999981828 1.356917198 0.632923966 0.081987164 63176071.35 0.025303393 13959.02576 0.020617433 8.43E-12 11.07423355 0.356935369 VAS(ph)SPVMVSNPATR ddPTM_K562_Paclitaxel_30min_R1 1 VASSPVMVSNPATR 14 0 P51610-2;P51610;A6NEM2;P51610-4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 VAS(0.5)S(0.5)PVMVSNPATR 201.06 2.93E-09 249890000 1554.8 1658.4 2459.3 1695.7 1600.6 1883.6 1656.1 1825.3 1727.9 1937.7 TRUE FALSE 1576.571997 1839.46972 1838.419299 1586.945392 1818.628818 2217.630013 1970.33633 1670.229372 1893.872515 1542.795676 1.021892932 1.192296393 1.191615537 1.028616696 1.178787863 1.437410052 1.277120723 1.082599204 1.227558869 1 10.59133129 -5.260622182 21.70108152 1.188880203 1.021892655 0.130516432 0.119927602 22.80316516 604765.0056 0.030944296 0.179877585 5.49E-06 5.260622182 -0.166987548 VASEAPLEHKPQVEAS(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 1 VASEAPLEHKPQVEASSPR 19 1 Q8TD19 Q8TD19 NEK9 Serine/threonine-protein kinase Nek9 1 VASEAPLEHKPQVEAS(0.5)S(0.5)PR 94.454 0.00074572 82392000 2527.3 2617.4 4227.5 2771.4 2086 1920.4 2082 3124.8 2078.3 3501.6 TRUE FALSE 2562.689997 2903.176583 3160.21534 2593.654808 2370.148516 2260.955976 2477.048631 2859.328736 2277.930001 2787.971998 0.919195028 1.041322002 1.133517604 0.930301599 0.850133544 0.810967965 0.888476869 1.025594496 0.81705627 1 11.44500036 -6.500970781 20.82603127 0.894643686 1.032270661 0.346613746 0.081490891 98.43674054 93574.26498 0.023328037 0.034101178 3.16E-07 6.500970781 0.137626976 VASGS(ph)DLHLTDIDSDSNR ddPTM_K562_Paclitaxel_30min_R1 1 VASGSDLHLTDIDSDSNR 18 0 A0A0D9SFK2;Q92614-3;Q92614-4;Q92614 A0A0D9SFK2 MYO18A Unconventional myosin-XVIIIa 1 VAS(0.255)GS(0.745)DLHLTDIDSDSNR 80.277 0.007242 8142600 962.42 930.04 1119.5 958.76 1001.6 972.23 1072.6 1378 531.73 1459.7 TRUE FALSE 975.8968493 1031.584912 836.8683792 897.2694249 1138.034877 1144.64134 1276.120251 1260.930299 582.8050423 1162.212339 0.839688942 0.887604509 0.720064958 0.772035707 0.979197036 0.984881421 1.098009553 1.084939694 0.501461758 1 10.18265796 -6.763544569 24.99999996 0.955664966 0.80470369 0.142055329 0.162165005 105.2841525 1250296.954 0.049669435 0.059132661 1.72E-07 6.763544569 -0.150961276 VASGSDLHLTDIDS(ph)DSNR ddPTM_K562_Paclitaxel_30min_R1 1 VASGSDLHLTDIDSDSNR 18 0 A0A0D9SFK2;Q92614-3;Q92614-4;Q92614 A0A0D9SFK2 MYO18A Unconventional myosin-XVIIIa 1 VASGSDLHLT(0.004)DIDS(0.915)DS(0.081)NR 95.554 0.0014974 7077400 631.4 533.71 820.68 643.13 680.86 601.73 622.67 710.4 540 709.22 TRUE FALSE 640.241548 591.9822627 613.489184 601.8825203 773.6046591 708.4383668 740.8183819 650.0470858 591.8694128 564.6805747 1.133811887 1.048348906 1.086435786 1.065881398 1.369986314 1.254582499 1.311924679 1.151176639 1.048149059 1 9.141291193 VASMAQSAPSEAPS(ph)CSPFGKK ddPTM_K562_Paclitaxel_30min_R1 1 VASMAQSAPSEAPSCSPFGKK 21 1 Q00013-3;Q00013;A8MTH1;Q00013-2;C9JB34;C9J9J4 Q00013-3 MPP1 55 kDa erythrocyte membrane protein 1 VAS(0.001)MAQS(0.028)APS(0.043)EAPS(0.768)CS(0.16)PFGKK 59.574 0.015972 14604000 1220.8 1122.7 2605.4 1162.7 862.94 809.83 517.64 1607.4 1185.7 2192 TRUE FALSE 1237.894966 1245.280183 1947.634547 1088.129626 980.4870377 953.4419799 615.8594877 1470.841337 1299.591783 1745.269197 0.709285976 0.713517539 1.115950795 0.623473805 0.561797022 0.546300812 0.352873636 0.842759008 0.744636865 1 10.76923386 VASMAQSAPSEAPSCS(ph)PFGKK ddPTM_K562_Paclitaxel_30min_R1 1 VASMAQSAPSEAPSCSPFGKK 21 1 Q00013-3;Q00013;A8MTH1;Q00013-2;C9JB34;C9J9J4 Q00013-3 MPP1 55 kDa erythrocyte membrane protein 1 VASMAQSAPS(0.036)EAPS(0.473)CS(0.49)PFGKK 81.94 0.0011628 18023000 2191.2 1292.1 3202.1 1604.2 1207.1 894.29 984.92 2029.5 1561.3 2389.9 TRUE FALSE 2221.88356 1433.175848 2393.690252 1501.313792 1371.527456 1052.879775 1171.803428 1857.081307 1711.269841 1902.837068 1.167668844 0.753178436 1.257958599 0.788987043 0.720780291 0.553321035 0.615819109 0.975953926 0.89932547 1 10.89393632 -5.252860307 24.03922034 0.831524741 1.167669141 0.20098545 0.194890905 1131.016375 3169073.151 0.051831735 0.572515274 5.59E-06 5.252860307 0.3361444 VASPLS(ph)PTSLTHTSRPPAALTPVPLSQGDLSHPPR ddPTM_K562_Paclitaxel_30min_R1 2 VASPLSPTSLTHTSRPPAALTPVPLSQGDLSHPPR 35 1 I3L2W6;I3L0Y2;I3L410;I3L4Q4;I3L1N0;Q9BUL5-3;Q9BUL5-4;Q9BUL5 I3L2W6 PHF23 PHD finger protein 23 1 VAS(0.088)PLS(0.804)PT(0.023)S(0.076)LT(0.008)HT(0.001)SRPPAALTPVPLSQGDLSHPPR;VAS(0.01)PLS(0.268)PT(0.082)S(0.232)LT(0.232)HT(0.082)S(0.082)RPPAALT(0.013)PVPLSQGDLSHPPR 80.022 3.13E-07 62154000 1395.45 1293.87 1406.27 1388.57 1088.58 1125.65 1201.68 1856.57 1527.94 1872.76 TRUE FALSE 1414.990605 1435.139102 1051.239746 1299.513335 1236.863026 1325.268223 1429.692507 1698.84279 1674.705464 1491.090484 0.948963608 0.9624762 0.705014053 0.871518764 0.829502327 0.888791282 0.95882344 1.139329107 1.123141407 1 10.54215209 -8.009579997 2.738225157 1.097758996 0.862599851 0.627451486 0.075369121 0.176428004 2.650152725 0.040604752 0.022847151 9.78E-09 8.009579997 -0.235159145 VASPSQGQVGSSS(ph)PKR ddPTM_K562_Paclitaxel_30min_R1 1 VASPSQGQVGSSSPKR 16 1 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 VASPSQGQVGS(0.164)S(0.164)S(0.672)PKR 67.214 0.027348 23873000 985.02 760.95 1711.2 1060.8 803.48 728.45 593.94 813.35 946.7 1012 TRUE FALSE 998.813319 844.0330944 1279.186396 992.765036 912.927579 857.6303796 706.6370144 744.2508407 1037.634765 805.7538445 1.239601059 1.047507375 1.587564744 1.232094693 1.133010516 1.064382609 0.876988697 0.923670232 1.287781339 1 9.654195357 -6.965827938 2.345898393 1.016680004 1.28347108 0.346310041 0.159759206 0.342916217 3.816203172 0.057400678 0.064081165 1.08E-07 6.965827938 0.266791076 VASS(ph)PAPPEGPSHPREPSTPHR ddPTM_K562_Paclitaxel_30min_R1 1 VASSPAPPEGPSHPREPSTPHR 22 1 H7BYJ3;O14578-3;O14578;O14578-4 H7BYJ3 CIT Citron Rho-interacting kinase 1 VAS(0.061)S(0.939)PAPPEGPSHPREPSTPHR 69.024 0.0039982 14752000 2024.2 1876.3 2795.1 2002.5 2166.2 1948.7 1590.7 2307 2384.4 2461.7 TRUE FALSE 2052.545045 2081.160779 2089.442436 1874.068613 2461.273114 2294.274584 1892.527021 2111.00595 2613.432274 1960.004189 1.047214622 1.061814455 1.066039781 0.956155412 1.255748905 1.170545755 0.965572947 1.07704155 1.333380964 1 10.93664102 -6.743913888 24.99999656 1.131001577 1.037251971 0.176264793 0.106597747 496.0741849 707643.9234 0.032056897 0.041287778 1.80E-07 6.743913888 -0.093749607 VASS(ph)PVMVSNPATR ddPTM_K562_Paclitaxel_30min_R1 1 VASSPVMVSNPATR 14 0 P51610-2;P51610;A6NEM2;P51610-4 P51610-2 HCFC1 Host cell factor 1;HCF N-terminal chain 1;HCF N-terminal chain 2;HCF N-terminal chain 3;HCF N-terminal chain 4;HCF N-terminal chain 5;HCF N-terminal chain 6;HCF C-terminal chain 1;HCF C-terminal chain 2;HCF C-terminal chain 3;HCF C-terminal chain 4;HCF C-terminal chain 5;HCF C-terminal chain 6 1 VAS(0.024)S(0.976)PVMVSNPATR 198.38 5.87E-09 217570000 2603.3 2184 2958 2272.9 2127.9 2095.7 1756.7 2306.1 2120.9 2417.7 TRUE FALSE 2639.754232 2422.456506 2211.216316 2127.126367 2417.756006 2467.34297 2090.024654 2110.182411 2324.621921 1924.971413 1.371321264 1.258437652 1.148700859 1.10501712 1.255995798 1.281755642 1.085743217 1.096214934 1.207613737 1 10.91062131 -2 0.056869829 0.734356283 2.078724557 0.490002374 0.076430812 371.8845129 1.588980615 7.982285078 42.07278632 0.01 2 1.344368275 VAVPTGPTPLDS(ph)TPPGGAPHPLTGQEEAR ddPTM_K562_Paclitaxel_30min_R1 1 VAVPTGPTPLDSTPPGGAPHPLTGQEEAR 29 0 A0A0A0MR08;O94966-2;O94966-7;O94966-6;O94966-5;E7ESU0;O94966-4;O94966-3;O94966 A0A0A0MR08 USP19 Ubiquitin carboxyl-terminal hydrolase 19;Ubiquitin carboxyl-terminal hydrolase 1 VAVPT(0.006)GPT(0.023)PLDS(0.538)T(0.434)PPGGAPHPLTGQEEAR 105.44 3.04E-09 28592000 1033.9 875.96 1483 1098.9 845.54 1010.3 1067.2 1439.7 909.29 1264 TRUE FALSE 1048.37779 971.6002751 1108.598308 1028.421472 960.7168631 1189.46252 1269.695629 1317.388499 996.6313673 1006.396106 1.041714871 0.965425312 1.101552661 1.021885385 0.954611069 1.181902943 1.261626134 1.309015894 0.990297321 1 9.97498253 -7.275587812 23.80728489 1.17494808 1.019135072 0.275375582 0.102272446 477.7233767 803852.3693 0.035303171 0.031309133 5.30E-08 7.275587812 -0.155813008 VAVPTGPTPLDST(ph)PPGGAPHPLTGQEEAR ddPTM_K562_Paclitaxel_30min_R1 1 VAVPTGPTPLDSTPPGGAPHPLTGQEEAR 29 0 A0A0A0MR08;O94966-2;O94966-7;O94966-6;O94966-5;E7ESU0;O94966-4;O94966-3;O94966 A0A0A0MR08 USP19 Ubiquitin carboxyl-terminal hydrolase 19;Ubiquitin carboxyl-terminal hydrolase 1 VAVPT(0.041)GPT(0.009)PLDS(0.223)T(0.727)PPGGAPHPLTGQEEAR 90.744 1.64E-06 37940000 1230.9 1126.2 1394.6 1140.6 1106.9 1147.2 909.53 1324.1 1074.6 1377.3 TRUE FALSE 1248.136398 1249.162325 1042.515982 1067.447021 1257.67852 1350.639813 1082.108569 1211.60944 1177.820131 1096.605504 1.138181774 1.139117322 0.950675496 0.973410235 1.146883282 1.231655146 0.986780173 1.10487266 1.074060022 1 10.0988289 -9.049120478 19.79061485 0.999999997 1.081943201 0.080016382 0.084649226 2432.043054 979872.2284 0.086486149 0.022330628 8.93E-10 9.049120478 0.081943204 VCEVCSAYLGLHDNDRR ddPTM_K562_Paclitaxel_30min_R1 2 VCEVCSAYLGLHDNDRR 17 1 Q9Y383;Q96HJ9-2;A0A0A6YYJ8;Q9Y383-3;Q9Y383-2;B8ZZ10;A8MYV2;Q9NQ29-2;Q9NQ29-3;Q9NQ29 Q9Y383 LUC7L2;LUC7L Putative RNA-binding protein Luc7-like 2;Putative RNA-binding protein Luc7-like 1 0 ; 89.624 0.0029714 20923100 4754.8 4959.1 6310.6 5093.4 4075.9 4363 4739.5 6106.7 4622.9 6206.6 FALSE TRUE 4821.38187 5500.551309 4717.410981 4766.732121 4631.106586 5136.71679 5638.795383 5587.897718 5066.950201 4941.691513 0.975654157 1.11309079 0.954614623 0.964595242 0.937150078 1.039465288 1.141065841 1.130766197 1.02534733 1 12.27078924 -7.522581282 24.9996097 1.085916829 0.992211532 0.302650992 0.060164057 12.83849279 1079204.152 0.023256992 0.018219898 3.00E-08 7.522581282 -0.093705297 VCTIS(ph)PAPR ddPTM_K562_Paclitaxel_30min_R1 2 VCTISPAPR 9 0 O43439-2;O43439-5;O43439;O43439-4 O43439-2 CBFA2T2 Protein CBFA2T2 1 VCT(0.001)IS(0.999)PAPR;VCT(0.003)IS(0.997)PAPR 130.41 0.00061459 46991000 3758.1 3419 4070.8 3928.2 3602.8 3203.4 3122.2 3942.4 3641.8 4262.8 TRUE FALSE 3810.724995 3792.297982 3043.076193 3676.262834 4093.562356 3771.478012 3714.621151 3607.468512 3991.611162 3394.03902 1.122769942 1.117340714 0.896594345 1.08315279 1.206103504 1.111206439 1.094454462 1.062883629 1.176065195 1 11.72878744 -5.560317631 24.99999097 1.082103974 1.121415678 0.038169486 0.081689242 622.9988956 416008.7055 0.021723251 0.057474808 2.75E-06 5.560317631 0.039311704 VCVDT(ph)HMRST(ph)CY(ph)GGIKK ddPTM_K562_Paclitaxel_30min_R1 1 VCVDTHMRSTCYGGIKK 17 2 D6RJI3;P35556-2;P35556 D6RJI3 FBN2 Fibrillin-2 3 VCVDT(0.503)HMRS(0.503)T(0.995)CY(1)GGIKK 55.173 0.031005 0 697.3 475.02 874.96 654.27 448.55 623.2 593.71 820.07 749.85 733.31 TRUE FALSE 707.0643514 526.88429 654.0655266 612.3080506 509.650104 733.7157698 706.3633731 750.3999348 821.8764429 583.8610195 1.211014827 0.902413884 1.120241812 1.048722265 0.872896266 1.25666168 1.209814236 1.285237256 1.407657671 1 9.189481185 -7.290954746 24.41016311 1.248322806 1.029846949 0.366129368 0.131220792 525.6303729 434711.3462 0.044127559 0.038923368 5.12E-08 7.290954746 -0.218475857 VDDDS(ph)LGEFPVTNSR ddPTM_K562_Paclitaxel_30min_R1 3 VDDDSLGEFPVTNSR 15 0 J3KMZ8;Q92785;Q92785-2 J3KMZ8 DPF2 Zinc finger protein ubi-d4 1 VDDDS(1)LGEFPVTNSR;VDDDS(1)LGEFPVTNSR;VDDDS(1)LGEFPVTNSR 207.79 2.53E-13 146842000 8490.7 6954.5 9594.1 7954.9 6555.3 6520.7 6313.5 8528.4 5888.7 10683.6 TRUE FALSE 8609.595996 7713.815829 7171.950797 7444.708319 7448.242842 7677.05459 7511.453666 7803.859187 6454.335946 8506.276456 1.012146271 0.906838129 0.84313634 0.875201783 0.875617302 0.902516469 0.883048383 0.917423649 0.758773358 1 13.05431203 -5.297655832 3.4381733 0.87910273 1.023933137 0.315657822 0.057041092 0.291479665 5.954654921 0.013367077 0.104167065 5.04E-06 5.297655832 0.144830407 VDDSTGT(ph)VISDVEEDAGELSR ddPTM_K562_Paclitaxel_30min_R1 1 VDDSTGTVISDVEEDAGELSR 21 0 Q9Y2D8-2;Q9Y2D8-3;Q9Y2D8;S4R403 Q9Y2D8-2 SSX2IP Afadin- and alpha-actinin-binding protein 1 VDDS(0.14)T(0.25)GT(0.604)VIS(0.006)DVEEDAGELSR 100.39 0.0012083 3692700 615.09 529.29 564.11 536.95 359.26 569.26 477.27 583.27 528.59 684.53 TRUE FALSE 623.7031577 587.0796721 421.6934537 502.5124303 408.1972943 670.2102682 567.829491 533.7175728 579.3634313 545.0224103 1.144362408 1.077166115 0.773717641 0.922003244 0.748955064 1.229693047 1.041846134 0.979258032 1.063008457 1 9.090171742 -7.265041254 24.98994477 1.060157561 0.931750027 0.20339096 0.128094694 588.0621214 4079982.67 0.046651569 0.042823497 5.43E-08 7.265041254 -0.128407534 VDDSTGTVIS(ph)DVEEDAGELSR ddPTM_K562_Paclitaxel_30min_R1 4 VDDSTGTVISDVEEDAGELSR 21 0 Q9Y2D8-2;Q9Y2D8-3;Q9Y2D8;S4R403 Q9Y2D8-2 SSX2IP Afadin- and alpha-actinin-binding protein 1 VDDSTGT(0.001)VIS(0.999)DVEEDAGELSR;VDDS(0.031)T(0.111)GT(0.149)VIS(0.709)DVEEDAGELSR;VDDSTGT(0.001)VIS(0.999)DVEEDAGELSR;VDDST(0.001)GT(0.002)VIS(0.998)DVEEDAGELSR 212.47 2.58E-36 157236000 4903.19 4705.99 7198.43 5800.42 5030.33 4229.34 4352.12 5885.37 4650.51 6429.37 TRUE FALSE 4971.849788 5219.805903 5381.097317 5428.407023 5715.54611 4979.354066 5177.91205 5385.371083 5097.212265 5119.060865 0.971242562 1.019680375 1.051188384 1.060430256 1.116522398 0.97270851 1.011496481 1.052023257 0.995731912 1 12.32166344 -10.39588638 14.12042742 1.000000001 1.03050359 0.03478198 0.042101567 0 0 0.042001847 0.010186944 4.02E-11 10.39588638 0.030503589 VDGETAS(ph)DSESRAESAPLPVSADDTPEVLNR ddPTM_K562_Paclitaxel_30min_R1 2 VDGETASDSESRAESAPLPVSADDTPEVLNR 31 1 O95674 O95674 CDS2 Phosphatidate cytidylyltransferase 2 1 VDGET(0.142)AS(0.517)DS(0.111)ES(0.111)RAES(0.111)APLPVS(0.008)ADDTPEVLNR;VDGET(0.063)AS(0.699)DS(0.19)ES(0.046)RAES(0.002)APLPVSADDTPEVLNR 75.512 3.68E-05 25451700 863.92 1014.8 1423.12 1380.25 890.87 1070.58 1059.85 1204.97 906.09 1380.8 TRUE FALSE 876.0175454 1125.599296 1063.835755 1291.726943 1012.221577 1260.432331 1260.951005 1102.600277 993.123993 1099.392202 0.796819864 1.023837802 0.967658087 1.17494643 0.920710166 1.146481055 1.146952837 1.002918044 0.903339128 1 10.10249044 -4.803172295 1.532352802 1.043640643 0.29910959 0.371106746 0.090936913 4.259918885 3.595402095 0.025293409 6.765783494 1.57E-05 4.803172295 -0.744531053 VDLTLDPDTAHPALMLS(ph)PDRR ddPTM_K562_Paclitaxel_30min_R1 2 VDLTLDPDTAHPALMLSPDRR 21 1 H0YAD6;D6REK2;Q8WV44-3;Q8WV44-2;Q8WV44 H0YAD6 TRIM41 E3 ubiquitin-protein ligase TRIM41 1 VDLTLDPDTAHPALMLS(1)PDRR;VDLTLDPDTAHPALMLS(1)PDRR 91.065 0.00024752 55797000 3097.36 3241.9 4398.7 3344.5 3384.05 3702.8 3098.66 3985 3707.1 4195.56 TRUE FALSE 3140.732596 3595.861605 3288.193783 3129.998739 3845.014902 4359.43959 3686.614559 3646.449376 4063.183519 3340.502569 0.940197629 1.076443299 0.984341043 0.936984383 1.151028872 1.305025067 1.103610754 1.091587059 1.216338989 1 11.70584945 -6.774556773 24.54332929 1.155149808 0.991048826 0.464926551 0.08356894 160.6358377 300556.6997 0.025705464 0.029329761 1.68E-07 6.774556773 -0.164100982 VDLYQQAS(ph)PPDALR ddPTM_K562_Paclitaxel_30min_R1 1 VDLYQQASPPDALR 14 0 P48634-2;P48634-3;P48634;P48634-4 P48634-2 PRRC2A Protein PRRC2A 1 VDLYQQAS(1)PPDALR 137.73 9.97E-06 14571000 923.43 848.78 915.03 1001 672.13 696.42 789.15 1175.6 736.3 1107.6 TRUE FALSE 936.360869 941.4526708 684.0193596 936.8003403 763.6854853 819.9203088 938.8870929 1075.725442 807.0249049 881.870512 1.061789522 1.067563387 0.775646028 1.062287861 0.865983696 0.929751361 1.064654141 1.219822443 0.915128575 1 9.784423025 -7.772102772 23.47464265 1.06821992 0.957297574 0.122548798 0.112819033 180.3111374 396933.365 0.046003455 0.031426607 1.69E-08 7.772102772 -0.110922347 VDNDENEHQLSLR ddPTM_K562_Paclitaxel_30min_R1 3 VDNDENEHQLSLR 13 0 P06748-2;P06748;P06748-3;E5RGW4 P06748-2 NPM1 Nucleophosmin 0 ;; 246.31 6.28E-55 251776000 8311.2 8453.3 12069.5 10002.7 8030.4 7765.6 9836.9 12428.2 6437.2 13084.1 FALSE TRUE 8427.582442 9376.259881 9022.405451 9361.171592 9124.276436 9142.720126 11703.40042 11372.34684 7055.521822 10417.55324 0.808979062 0.900044345 0.866077211 0.898595993 0.875855993 0.877626437 1.123430824 1.091652385 0.677272452 1 13.34672885 -7.57855422 24.99860126 0.983555762 0.873341759 0.157510173 0.11440378 157.0440947 70512.09074 0.04324579 0.033498049 2.64E-08 7.57855422 -0.110214002 VDNLTYRTS(ph)PDSLR ddPTM_K562_Paclitaxel_30min_R1 1 VDNLTYRTSPDSLR 14 1 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 1 VDNLTYRT(0.14)S(0.852)PDS(0.008)LR 88.224 0.012204 32937000 754.01 823.48 1145.5 853.66 684.82 719.43 863.32 883.08 935.6 961.31 TRUE FALSE 764.5684663 913.3903312 856.3043576 798.9100684 778.1040781 847.0108092 1027.130463 808.056842 1025.46856 765.3944943 0.998920781 1.193358899 1.118775173 1.043788627 1.016605272 1.106633005 1.341962179 1.055739031 1.339790876 1 9.580059713 -7.543335745 24.97593207 1.194057912 1.079675325 0.174454965 0.112313887 389.3086821 475302.1461 0.04023203 0.031166654 2.86E-08 7.543335745 -0.114382587 VDPSLMEDS(ph)DDGPSLPTK ddPTM_K562_Paclitaxel_30min_R1 1 VDPSLMEDSDDGPSLPTK 18 0 Q5T092;A0A0A0MR06;Q5T091;O15258 Q5T092 RER1 Protein RER1 1 VDPSLMEDS(1)DDGPSLPTK 178.52 8.14E-12 10807000 1440.8 1502.3 2749 1936 1070.6 1373.3 1441.4 1787.4 1004.3 2457 TRUE FALSE 1460.975645 1666.326194 2054.980951 1811.833625 1216.433845 1616.835473 1714.898125 1635.549213 1100.767502 1956.262051 0.74682001 0.85179089 1.050463024 0.926171227 0.621815387 0.826492275 0.876619839 0.836058345 0.562689187 1 10.93388392 VDS(ph)PSHGLVTSSLCIPS(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 1 VDSPSHGLVTSSLCIPSPAR 20 0 Q9UER7-3;Q9UER7 Q9UER7-3 DAXX Death domain-associated protein 6 2 VDS(0.945)PS(0.055)HGLVT(0.003)S(0.009)S(0.035)LCIPS(0.954)PAR 88.595 0.002927 7760100 489.6 624.43 930.53 765.33 702.5 561.97 711.13 755.92 463.48 1023 TRUE FALSE 496.4559105 692.6073791 695.6061929 716.2451593 798.1923934 661.627489 846.0632052 691.6998777 507.9993249 814.5120385 0.609513288 0.850334122 0.854015852 0.879354909 0.9799639 0.812299215 1.03873628 0.849219956 0.623685472 1 9.669792212 -5.172337976 2.355500171 0.881443455 0.500987852 0.347271631 0.110292588 0.949807875 5.106289587 0.028565131 0.807084899 6.72E-06 5.172337976 -0.380455603 VDS(ph)PSHGLVTSSLCIPSPAR ddPTM_K562_Paclitaxel_30min_R1 1 VDSPSHGLVTSSLCIPSPAR 20 0 Q9UER7-3;Q9UER7 Q9UER7-3 DAXX Death domain-associated protein 6 1 VDS(0.968)PS(0.032)HGLVTSSLCIPSPAR 138.28 3.84E-11 16447000 335.31 231.05 417.85 298.39 207.39 287.8 339.38 410.28 353.78 400.78 TRUE FALSE 340.0053745 256.2768204 312.3585996 279.2526009 235.6400291 338.8372891 403.7755833 375.4241531 387.7621497 319.100816 1.065510828 0.803121796 0.978871203 0.875123431 0.738450099 1.061850275 1.26535428 1.176506403 1.215171288 1 8.317868488 -7.498717841 6.844621405 1.177485834 0.891367298 0.600972048 0.104935032 0.114171771 21.64413514 0.036542343 0.030935924 3.17E-08 7.498717841 -0.286118536 VDS(ph)TTCLFPVEEK ddPTM_K562_Paclitaxel_30min_R1 4 VDSTTCLFPVEEK 13 0 A0A6I8PRN4;A0A6I8PTT9;Q06210-2;Q06210 A0A6I8PRN4 GFPT1 Glutamine--fructose-6-phosphate aminotransferase [isomerizing] 1 1 VDS(0.866)T(0.129)T(0.005)CLFPVEEK;VDS(0.934)T(0.066)TCLFPVEEK;VDS(0.74)T(0.259)TCLFPVEEK;VDS(0.897)T(0.071)T(0.033)CLFPVEEK 229.48 6.50E-32 233751000 16296.8 11656.6 23633.7 13485.2 10528 10198.8 11758.9 16428.1 16625.6 24258.6 TRUE FALSE 16525.00548 12929.30701 17667.08014 12620.31963 11962.09184 12007.41398 13990.08989 15032.43036 18222.56317 19314.684 0.85556696 0.669402979 0.914696825 0.653405442 0.619326303 0.621672815 0.724324037 0.778290256 0.943456448 1 14.23741045 -8.752181729 2.396010276 0.999990094 0.717985428 0.540572366 0.09123454 0.223081578 2.407709211 0.088037721 0.025275675 1.77E-09 8.752181729 -0.282004666 VDSSTNSSPS(ph)PQQSES(ph)LSPAHTSDFR ddPTM_K562_Paclitaxel_30min_R1 1 VDSSTNSSPSPQQSESLSPAHTSDFR 26 0 F2Z3H6;Q9BQE9-2;Q9BQE9-3;Q9BQE9 F2Z3H6 BCL7B B-cell CLL/lymphoma 7 protein family member B 2 VDSS(0.002)T(0.007)NS(0.015)S(0.05)PS(0.924)PQQS(0.026)ES(0.591)LS(0.384)PAHTSDFR 123.97 4.05E-10 34727000 1182.1 1587.1 2341.9 1841.8 1180.6 1658.8 1363.9 1762.9 852.88 2064.8 TRUE FALSE 1198.653047 1760.384945 1750.658381 1723.675192 1341.417708 1952.964889 1622.692905 1613.130641 934.8029348 1643.992627 0.729110963 1.070798565 1.064882137 1.048468931 0.81595117 1.187940175 0.987043907 0.981227419 0.568617474 1 10.68298811 -8.568978566 24.99260397 0.781178936 0.995317952 0.206832036 0.15704679 174.6097265 94660.07175 0.099542139 0.03762342 2.70E-09 8.568978566 0.214139016 VDSSTNSSPS(ph)PQQSESLS(ph)PAHTSDFR ddPTM_K562_Paclitaxel_30min_R1 1 VDSSTNSSPSPQQSESLSPAHTSDFR 26 0 F2Z3H6;Q9BQE9-2;Q9BQE9-3;Q9BQE9 F2Z3H6 BCL7B B-cell CLL/lymphoma 7 protein family member B 2 VDS(0.017)S(0.017)T(0.071)NS(0.22)S(0.189)PS(0.473)PQQS(0.015)ES(0.182)LS(0.815)PAHT(0.002)S(0.001)DFR 91.594 0.00011811 37416000 2453.6 2101.5 3287.3 2659.7 2470.3 2225.6 1960 2771 1644.4 3076 TRUE FALSE 2487.95797 2330.948877 2457.380458 2489.118746 2806.796683 2620.278911 2331.899768 2535.586254 1802.351967 2449.109512 1.015862279 0.951753634 1.003377124 1.016336238 1.146047847 1.069890464 0.952141894 1.035309463 0.735921346 1 11.25804157 -8.725705789 24.9996889 0.867960366 1.023723542 0.381864639 0.079329444 152.1879038 106472.9359 0.052888005 0.019988302 1.88E-09 8.725705789 0.155763176 VDSSTNSSPSPQQSES(ph)LSPAHTSDFR ddPTM_K562_Paclitaxel_30min_R1 1 VDSSTNSSPSPQQSESLSPAHTSDFR 26 0 F2Z3H6;Q9BQE9-2;Q9BQE9-3;Q9BQE9 F2Z3H6 BCL7B B-cell CLL/lymphoma 7 protein family member B 1 VDSSTNSSPSPQQS(0.053)ES(0.735)LS(0.211)PAHTSDFR 137.36 3.94E-15 44298000 466.83 528.09 475.81 472.48 410.45 512.79 605.48 680.26 453.24 631.86 TRUE FALSE 473.3670603 585.7486521 355.6858808 442.1772475 466.360239 603.7261066 720.3666692 622.467667 496.7757271 503.0865852 0.940925626 1.164309821 0.707007285 0.878928718 0.926997962 1.200044136 1.431894013 1.237297287 0.987455722 1 8.97466291 -7.260561577 8.092957709 1.202714352 0.922235934 0.374215264 0.157576605 0.11992471 89.56925394 0.055534283 0.052249205 5.49E-08 7.260561577 -0.280478418 VDSSTNSSPSPQQSESLS(ph)PAHTSDFR ddPTM_K562_Paclitaxel_30min_R1 1 VDSSTNSSPSPQQSESLSPAHTSDFR 26 0 F2Z3H6;Q9BQE9-2;Q9BQE9-3;Q9BQE9 F2Z3H6 BCL7B B-cell CLL/lymphoma 7 protein family member B 1 VDSSTNSSPSPQQS(0.01)ES(0.193)LS(0.792)PAHT(0.004)S(0.001)DFR 119.48 7.46E-09 34502000 548.15 604.5 624.24 698.69 315.63 606.53 385.58 631.42 464.17 812.01 TRUE FALSE 555.8257912 670.5013543 466.6428915 653.8791506 358.6241497 714.0895794 458.7417921 577.7769298 508.7556025 646.5219163 0.859716859 1.037089907 0.721774281 1.011379714 0.554697591 1.10450947 0.709553351 0.893669519 0.786911611 1 9.336555466 -5.750055056 24.99934284 0.843617713 0.94840331 0.058475296 0.160751158 610.565476 1340743.686 0.037151415 0.096410281 1.78E-06 5.750055056 0.104785597 VDTFPQPLAAPQCHTLLAPEMEDNEMS(ph)CSP ddPTM_K562_Paclitaxel_30min_R1 1 VDTFPQPLAAPQCHTLLAPEMEDNEMSCSP 30 0 B7Z4K4;Q9UET6-2;Q9UET6 B7Z4K4 FTSJ1 Putative tRNA (cytidine(32)/guanosine(34)-2-O)-methyltransferase 1 VDTFPQPLAAPQCHT(0.001)LLAPEMEDNEMS(0.83)CS(0.168)P 55.783 0.0024812 43982000 3670.3 3657.5 4677.9 3962.2 3495.8 2997.3 3679.4 4607 4092.3 5419.4 TRUE FALSE 3721.695524 4056.838219 3496.906289 3708.082226 3971.987144 3528.829071 4377.546942 4215.606594 4485.3837 4314.923305 0.86251719 0.940187793 0.810421424 0.859362256 0.920523231 0.817819651 1.014513268 0.976982972 1.039504849 1 12.0751192 -7.773369132 24.99999521 1.00583223 0.87104497 0.743749354 0.040027115 115.9387519 242958.9517 0.016268838 0.011065738 1.69E-08 7.773369132 -0.134787259 VDTFPQPLAAPQCHTLLAPEMEDNEMSCS(ph)P ddPTM_K562_Paclitaxel_30min_R1 1 VDTFPQPLAAPQCHTLLAPEMEDNEMSCSP 30 0 B7Z4K4;Q9UET6-2;Q9UET6 B7Z4K4 FTSJ1 Putative tRNA (cytidine(32)/guanosine(34)-2-O)-methyltransferase 1 VDTFPQPLAAPQCHTLLAPEMEDNEMS(0.091)CS(0.909)P 70.504 0.00018166 45165000 692.98 577.19 618.7 658 462.02 392.1 724.41 574.89 684.75 770.4 TRUE FALSE 702.683858 640.2095561 462.501533 615.7988251 524.9549461 461.6334296 861.8630158 526.0495061 750.523297 613.3920571 1.14557052 1.043719997 0.754006394 1.003923703 0.855822862 0.752591143 1.405076909 0.8576073 1.223562138 1 9.260665675 -7.733407514 24.99992158 1.109696245 0.923835404 0.228250019 0.175653853 338.3732903 301774.4126 0.065469893 0.050702353 1.85E-08 7.733407514 -0.185860841 VEAEAGGSGART(ph)PPLSR ddPTM_K562_Paclitaxel_30min_R1 1 VEAEAGGSGARTPPLSR 17 1 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 VEAEAGGS(0.265)GART(0.587)PPLS(0.148)R 124.04 0.00018844 17950000 1178 1307.2 1462.6 1388.7 1269.4 1202.5 1236 1304.9 1029.5 1519.1 TRUE FALSE 1194.495634 1449.924517 1093.348541 1299.634998 1442.313771 1415.746491 1470.524548 1194.0406 1128.388075 1209.506586 0.987589194 1.19877356 0.903962453 1.074516677 1.192481122 1.170515735 1.215805325 0.987212979 0.932932559 1 10.24020291 -8.441217012 8.833148704 0.964316189 1.106481643 0.292303285 0.095078538 0.463030076 46.73397265 0.054086423 0.025829624 3.62E-09 8.441217012 0.142165454 VEAEAGGSGARTPPLS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 VEAEAGGSGARTPPLSR 17 1 Q9Y3Q8 Q9Y3Q8 TSC22D4 TSC22 domain family protein 4 1 VEAEAGGS(0.027)GART(0.06)PPLS(0.913)R 103.39 0.0049631 20296000 1033.5 1058.7 1234.1 1358.5 1049.1 1220.9 1039.9 1212.9 795.31 1467.4 TRUE FALSE 1047.972189 1174.292446 922.5361918 1271.37189 1192.005181 1437.409473 1237.215596 1109.856574 871.703079 1168.343075 0.896972997 1.005092145 0.789610699 1.088183701 1.020252704 1.230297422 1.058948885 0.949940645 0.746101978 1 10.19024826 -5.256799114 21.83511454 0.993828708 0.896972776 0.038708109 0.132258771 326.7783232 1537316.865 0.034660645 0.259111251 5.54E-06 5.256799114 -0.096855932 VEDS(ph)T(ph)MPIRRTVNS(ph)TR ddPTM_K562_Paclitaxel_30min_R1 1 VEDSTMPIRRTVNSTR 16 2 B0QZK9;B0QZK8;Q5SSJ5-5;Q5SSJ5 B0QZK9 HP1BP3 Heterochromatin protein 1-binding protein 3 3 VEDS(1)T(1)MPIRRT(0.003)VNS(0.989)T(0.008)R 65.241 0.022357 112440000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 VEDVMMERESQFKEK ddPTM_K562_Paclitaxel_30min_R1 1 VEDVMMERESQFKEK 15 2 G3XAI2;P07942 G3XAI2 LAMB1 Laminin subunit beta-1 0 48.704 0.031068 8776800 1325 1529.3 1988.9 1588.6 1430.3 1264.4 1413.4 1827.9 1535.3 2331.9 FALSE TRUE 1343.554088 1696.274146 1486.777597 1486.714306 1625.131075 1488.623587 1681.585272 1672.608486 1682.772425 1856.6575 0.723641322 0.913617157 0.800781833 0.800747745 0.875299335 0.801776088 0.905705695 0.900870778 0.906345099 1 10.85849199 -8.793704899 0.351696587 1.014961218 0.799512086 0.586922138 0.04875068 1.006933422 0.382658016 0.080540047 0.053184237 1.61E-09 8.793704899 -0.215449132 VEEEQEADEEDVS(ph)EEEAESKEGTNKDFPQNAIR ddPTM_K562_Paclitaxel_30min_R1 1 VEEEQEADEEDVSEEEAESKEGTNKDFPQNAIR 33 2 Q9H3N1 Q9H3N1 TMX1 Thioredoxin-related transmembrane protein 1 1 VEEEQEADEEDVS(0.411)EEEAES(0.411)KEGT(0.177)NKDFPQNAIR 40.037 0.02078 49360000 728.6 675.37 1683.5 791.19 578.48 289.35 371.44 704 720.27 1075.7 TRUE FALSE 738.8026479 749.1091806 1258.479604 740.4466146 657.2787697 340.6621598 441.918801 644.1908058 789.4551518 856.4717495 0.862611812 0.874645522 1.469376666 0.864531276 0.767426094 0.397750609 0.515975922 0.752144839 0.921752705 1 9.74226185 -6.61271757 3.720142717 0.686792634 1.063952462 0.296328299 0.228839648 0.265834895 7.135310714 0.072190012 0.096134013 2.44E-07 6.61271757 0.377159829 VEEPSQCLASGTAISELIIEDNNAS(ph)PQKLR ddPTM_K562_Paclitaxel_30min_R1 2 VEEPSQCLASGTAISELIIEDNNASPQKLR 30 1 Q5UIP0-2;Q5UIP0;H7C2B5 Q5UIP0-2 RIF1 Telomere-associated protein RIF1 1 VEEPSQCLASGTAISELIIEDNNAS(1)PQKLR;VEEPSQCLASGTAISELIIEDNNAS(1)PQKLR 106.52 5.21E-10 129683000 2210.65 2031.37 5324.8 3006.1 2242.41 1985.56 1829.88 2767.2 2115.19 3626.2 TRUE FALSE 2241.60592 2253.161846 3980.488384 2813.302201 2547.864206 2337.671187 2177.090177 2532.109088 2318.36345 2887.17845 0.776400198 0.780402696 1.378677644 0.974412303 0.882475486 0.80967326 0.754054595 0.87701856 0.802985853 1 11.49544456 -6.84621607 3.868243225 0.836722256 0.992315424 0.113618608 0.166784033 0.4622314 13.28811448 0.055774051 0.065207318 1.42E-07 6.84621607 0.155593169 VEETVKHDWDR ddPTM_K562_Paclitaxel_30min_R1 1 VEETVKHDWDR 11 1 A0A0B4J225;E9PKD3;E2QRB9;E9PIR7;F8W809;A0A087WSW9;A0A182DWI3;A0A087WSY9;Q16881-7;Q16881-5;Q16881-2;Q16881-4;Q16881-3;Q16881-6;Q16881 A0A0B4J225 TXNRD1 "Thioredoxin reductase 1, cytoplasmic" 0 107.55 0.0062246 5630500 3165.8 2903.6 5812.5 3597.4 3083 2738.2 2557.5 3730.3 3280.5 4272.6 FALSE TRUE 3210.130967 3220.624867 4345.062487 3366.678865 3502.956796 3223.781324 3042.772274 3413.387731 3595.606683 3401.841775 0.943644996 0.946729766 1.277267661 0.989663567 1.029723611 0.947657633 0.8944485 1.003394031 1.056958824 1 11.73210033 -6.878984549 2.575097236 0.977102833 1.0511636 0.073663868 0.096350797 0.712444193 9.603400884 0.033970816 0.039898748 1.32E-07 6.878984549 0.074060767 VEFMDDTSR ddPTM_K562_Paclitaxel_30min_R1 2 VEFMDDTSR 9 0 P62857 P62857 RPS28 40S ribosomal protein S28 0 ; 176.44 1.53E-05 72461000 4932.8 4694.2 7200.8 5521.7 4350.6 4052.6 4427.7 5360.8 4499 5942.7 FALSE TRUE 5001.874419 5206.728631 5382.868982 5167.562876 4943.225376 4771.271709 5267.832961 4905.366579 4931.149052 4731.574478 1.057126849 1.100421996 1.137648579 1.092144465 1.0447316 1.008389856 1.11333616 1.03673029 1.042179316 1 12.20810462 -6.726398909 5.103356399 1.04457214 1.10082003 0.394730756 0.033731345 0.206684565 13.0112744 0.010285822 0.012993302 1.88E-07 6.726398909 0.05624789 VEGNFNPFAS(ph)PQK ddPTM_K562_Paclitaxel_30min_R1 1 VEGNFNPFASPQK 13 0 Q5TH58;Q9H6K1-2;Q9H6K1 Q5TH58 C6orf106 Uncharacterized protein C6orf106 1 VEGNFNPFAS(1)PQK 130.72 7.82E-11 0 1577 1200.6 2126.5 1484.4 1073.3 814.79 1086.5 1645.5 1031.8 1921.7 TRUE FALSE 1599.082865 1331.685568 1589.638775 1389.197228 1219.501631 959.2815663 1292.657703 1505.704504 1130.909 1530.056485 1.045113616 0.870350592 1.038941235 0.907938525 0.797030465 0.62695827 0.844843125 0.98408426 0.739128922 1 10.5793692 -6.561581236 4.610126636 0.822521137 0.974002962 0.271268862 0.111411606 0.270286509 13.18626212 0.033709481 0.04521109 2.74E-07 6.561581236 0.151481825 VEHS(ph)PGPPPVDKQCQEGLSENSAYR ddPTM_K562_Paclitaxel_30min_R1 2 VEHSPGPPPVDKQCQEGLSENSAYR 25 1 Q9H869-7;Q9H869-5;Q9H869-6;Q9H869-4;Q9H869-3;Q9H869-2;Q9H869;Q9H869-8;Q9H869-9 Q9H869-7 YY1AP1 YY1-associated protein 1 1 VEHS(1)PGPPPVDKQCQEGLSENSAYR;VEHS(1)PGPPPVDKQCQEGLSENSAYR 63.536 0.0026975 79252000 5331 3883.5 8829.8 5345.4 4163 3526.4 3494.4 5733.4 5729.6 7281.3 TRUE FALSE 5405.650448 4307.513663 6600.607784 5002.569969 4730.07108 4151.757527 4157.444158 5246.311883 6279.953681 5797.367063 0.93243198 0.743012063 1.138552676 0.862903783 0.815899878 0.716145361 0.71712626 0.904947337 1.083242377 1 12.50118212 -8.61459687 5.121854235 1.037265754 0.845876509 0.293284891 0.119233783 0.279170993 11.87648437 0.090678211 0.032277103 2.43E-09 8.61459687 -0.191389245 VEILANDQGNR ddPTM_K562_Paclitaxel_30min_R1 2 VEILANDQGNR 11 0 P48741;P17066 P48741 HSPA7;HSPA6 Putative heat shock 70 kDa protein 7;Heat shock 70 kDa protein 6 0 ; 150.15 0.0028822 113583000 2989.5 2932.8 4102.7 3211.1 2093.71 2755.2 2971.5 2920.2 2041.35 3259.9 FALSE TRUE 3031.362223 3253.013022 3066.922643 3005.154418 2378.908749 3243.796035 3535.326613 2672.110783 2237.430788 2595.530591 1.1679162 1.253313305 1.181616836 1.157818917 0.91654044 1.249762205 1.36208243 1.029504639 0.86203214 1 11.34181378 -8.513595571 21.98196636 0.935933147 1.179206815 0.467792514 0.110934034 83.29230117 197244.8139 0.071151218 0.030159488 3.06E-09 8.513595571 0.243273668 VEILPMPY(ph)VT(ph)EAT(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 VEILPMPYVTEATR 14 0 G5E9W2;Q9P2E5-2;Q9P2E5 G5E9W2 CHPF2 Chondroitin sulfate glucuronyltransferase 3 VEILPMPY(1)VT(1)EAT(1)R;VEILPMPY(1)VT(1)EAT(1)R 64.104 0.02089 22947400 277.22 289.06 424.42 321.57 406.59 287.19 431.36 293.03 283.27 459.44 TRUE FALSE 281.1019353 320.6205483 317.2699218 300.9459395 461.9744416 338.1191142 513.2083081 268.1352725 310.4793492 365.8058758 0.768445654 0.876477305 0.86731773 0.822693017 1.262895082 0.924312966 1.40295261 0.732998812 0.848754407 1 8.514934439 VEMGTSSQNDVDMSWIPQETLNQINKAS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 VEMGTSSQNDVDMSWIPQETLNQINKASPR 30 1 C9JBX5;A0A3B3IRT8;P43307-2;P43307 C9JBX5 SSR1 Translocon-associated protein subunit alpha 1 VEMGTSSQNDVDMSWIPQET(0.263)LNQINKAS(0.737)PR;VEMGTSSQNDVDMSWIPQET(0.257)LNQINKAS(0.743)PR 106.06 4.64E-10 68688000 5516.6 4854.7 10058.9 6105.2 5467.7 4507.9 4202.8 6554.6 6023.1 7735 TRUE FALSE 5593.84942 5384.752564 7519.406288 5713.639798 6212.493309 5307.312771 5000.25936 5997.745817 6601.645667 6158.602754 0.908298464 0.874346468 1.220959784 0.927749366 1.008750452 0.861772221 0.811914579 0.973880936 1.071938868 1 12.58838736 -3.684852593 16.11131178 0.962727978 0.316712764 0 0.11277254 0 0 0.026508305 0 0.000206608 3.684852593 -0.646015214 VEMPRQNS(ph)DPTSENPPLPTR ddPTM_K562_Paclitaxel_30min_R1 2 VEMPRQNSDPTSENPPLPTR 20 1 Q9UKE5-6;Q9UKE5-2;Q9UKE5-4;Q9UKE5;Q9UKE5-8;Q9UKE5-5;Q9UKE5-7;Q9UKE5-3 Q9UKE5-6 TNIK TRAF2 and NCK-interacting protein kinase 1 VEMPRQNS(0.999)DPT(0.001)SENPPLPTR;VEMPRQNS(0.999)DPTSENPPLPTR 72.968 0.0057612 51169000 1740.76 1793.3 2308.23 1697.76 1201.54 1509.24 1510.33 1814.22 1741.57 1777.16 TRUE FALSE 1765.136011 1989.098559 1725.488789 1588.873272 1365.21009 1776.882523 1796.907233 1660.090687 1908.85558 1414.973816 1.247469027 1.405749375 1.219449271 1.122899416 0.964830638 1.255770603 1.269922604 1.173230676 1.349039507 1 10.46655964 -5.950316215 6.736218235 1.169661634 1.325208851 0.237027946 0.116253766 0.300057617 30.89170189 0.031119319 0.065308599 1.12E-06 5.950316215 0.155547217 VENMSSNQDGNDS(ph)DEFM ddPTM_K562_Paclitaxel_30min_R1 4 VENMSSNQDGNDSDEFM 17 0 Q86WR0-2;Q86WR0 Q86WR0-2 CCDC25 Coiled-coil domain-containing protein 25 1 VENMSSNQDGNDS(1)DEFM;VENMSSNQDGNDS(1)DEFM;VENMSSNQDGNDS(1)DEFM;VENMSSNQDGNDS(1)DEFM 128.85 1.08E-05 98870000 8919.4 8499.3 12965.8 10227.3 9456.9 8896.7 7991.9 10398.8 9975.2 11685.8 TRUE FALSE 9044.299119 9427.282317 9692.423431 9571.366754 10745.08989 10474.40483 9508.321304 9515.357033 10933.36253 9304.227546 0.972063406 1.013225684 1.041722527 1.028711594 1.154861039 1.125768343 1.021935594 1.02269178 1.175096211 1 13.18367066 -5.840489292 1.312043249 1.080819568 0.97376774 0.271946428 0.05663286 0.810579856 2.316469714 0.018263492 0.089079155 1.44E-06 5.840489292 -0.107051828 VEPSSQSPGRS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 VEPSSQSPGRSPR 13 1 K7EKH8;K7EIZ7;X6RM00;G8JLD3;X6RLX0;Q8IUD2-5;Q8IUD2-4;Q8IUD2-2;Q8IUD2-3;Q8IUD2 K7EKH8 ERC1 ELKS/Rab6-interacting/CAST family member 1 1 VEPSSQS(0.003)PGRS(0.997)PR 84.41 0.017526 4091800 1056.2 1146.2 1637.8 1410.4 1113.8 1225 900.41 1251.1 831.51 1444.1 TRUE FALSE 1070.990059 1271.345992 1224.317134 1319.943257 1265.518417 1442.23655 1071.258097 1144.811246 911.3802508 1149.791627 0.931464479 1.105718603 1.064816533 1.147984753 1.100650228 1.254346019 0.931697598 0.995668449 0.792648189 1 10.16715671 -7.857311958 13.50674946 0.929305479 1.101533699 0.455030324 0.091584937 0.638343929 86.68507517 0.037754339 0.025453733 1.39E-08 7.857311958 0.172228219 VEQATKPS(ph)FESGR ddPTM_K562_Paclitaxel_30min_R1 1 VEQATKPSFESGR 13 1 P38159;P38159-2;H0Y6E7;H3BT71 P38159 RBMX "RNA-binding motif protein, X chromosome;RNA-binding motif protein, X chromosome, N-terminally processed" 1 VEQATKPS(0.587)FES(0.412)GR 137.39 0.00023927 10194000 1261.5 1326.3 2229.6 1545.3 1210.1 1097.1 1171.7 1615.2 904.42 2052.4 TRUE FALSE 1279.164892 1471.109919 1666.709905 1446.191375 1374.936107 1291.655281 1394.023958 1477.978678 991.2935821 1634.119753 0.782785282 0.90024609 1.019943551 0.884997181 0.841392502 0.790428779 0.853073317 0.904449429 0.60662236 1 10.674298 -6.739518887 3.910952121 0.825871802 0.907864231 0.077649102 0.107277531 0.507621557 16.89117253 0.032505168 0.040653929 1.82E-07 6.739518887 0.081992429 VEQMPQAS(ph)PGLAPR ddPTM_K562_Paclitaxel_30min_R1 4 VEQMPQASPGLAPR 14 0 H0Y6J8;Q8N3F8 H0Y6J8 MICALL1 MICAL-like protein 1 1 VEQMPQAS(1)PGLAPR;VEQMPQAS(1)PGLAPR;VEQMPQAS(1)PGLAPR;VEQMPQAS(1)PGLAPR 181.69 2.75E-06 180124000 7859.1 6862.4 9803.4 8269.1 7043.4 6560.5 6732.3 8495.2 8148.9 9781.4 TRUE FALSE 7969.151647 7611.660039 7328.410423 7738.756937 8002.830326 7723.912561 8009.71878 7773.479735 8931.638255 7787.945311 1.023267541 0.977364341 0.940994079 0.993684037 1.027592004 0.991777966 1.028476506 0.998142568 1.14685426 1 12.92702704 -8.635135452 15.30959594 1.073412218 0.996696906 0.351117496 0.041186638 0.822612055 108.3755254 0.026775786 0.010118167 2.32E-09 8.635135452 -0.076715312 VERADGYEPPVQES(ph)V ddPTM_K562_Paclitaxel_30min_R1 2 VERADGYEPPVQESV 15 1 D6R9B6;H0Y9Y4;D6RAT0;P61247 D6R9B6 RPS3A 40S ribosomal protein S3a 1 VERADGYEPPVQES(1)V;VERADGYEPPVQES(1)V 184.87 2.52E-06 60827000 4972.1 5103.2 5936.8 4776.8 4156.6 4417.2 4262.2 5983.8 6507.1 5952.2 TRUE FALSE 5041.72474 5660.384634 4437.981415 4470.437428 4722.799292 5200.528399 5070.9302 5475.43884 7132.136029 4739.138373 1.063848393 1.194391087 0.936453225 0.943301731 0.99655231 1.097357365 1.070011002 1.155365893 1.504943614 1 12.21040907 -8.436244761 3.920701146 1.272740978 1.042147278 0.275082287 0.134629092 0.259668671 7.25749113 0.082249857 0.034826741 3.66E-09 8.436244761 -0.2305937 VERPPS(ph)PFSMAPQASLPPVPPR ddPTM_K562_Paclitaxel_30min_R1 3 VERPPSPFSMAPQASLPPVPPR 22 1 P22681;A0A1B0GW38;A0A0U1RQX8 P22681 CBL E3 ubiquitin-protein ligase CBL 1 VERPPS(0.915)PFS(0.085)MAPQASLPPVPPR;VERPPS(0.999)PFS(0.001)MAPQASLPPVPPR;VERPPS(0.994)PFS(0.006)MAPQASLPPVPPR 105.17 3.09E-05 44113000 2130.73 2404.38 2225.1 2255.67 2028.6 1731.1 2110.98 2956.82 1592.2 2350.03 TRUE FALSE 2160.566794 2666.898339 1663.345985 2111.001422 2304.929664 2038.086279 2511.527435 2705.619685 1745.137924 1871.092596 1.154708644 1.425316067 0.888970428 1.128218575 1.23186296 1.089249289 1.342278538 1.446010577 0.932683892 1 10.86966524 VERPPS(ph)PFSMAPQASLPPVPPRLDLLPQR ddPTM_K562_Paclitaxel_30min_R1 2 VERPPSPFSMAPQASLPPVPPRLDLLPQR 29 2 P22681;A0A1B0GW38;A0A0U1RQX8 P22681 CBL E3 ubiquitin-protein ligase CBL 1 VERPPS(0.948)PFS(0.049)MAPQAS(0.003)LPPVPPRLDLLPQR;VERPPS(0.984)PFS(0.015)MAPQAS(0.001)LPPVPPRLDLLPQR 52.79 0.0044211 19268900 938.4 1016.83 1107.36 895.84 830.68 702.31 1073.02 1177.47 878.79 1214.21 TRUE FALSE 951.5404952 1127.850938 827.7932723 838.384832 943.8326795 826.8548176 1276.619943 1077.436574 963.201706 966.7533355 0.98426399 1.166637752 0.856261098 0.867216901 0.976291102 0.85529037 1.320522926 1.114489637 0.99632623 1 9.917004027 -7.735122282 24.9999981 1.117375824 0.95383141 0.290537729 0.119648165 286.4728594 272135.5767 0.047077825 0.036454956 1.84E-08 7.735122282 -0.163544414 VES(ph)EEPQDNDFLS(ph)CMS(ph)RR ddPTM_K562_Paclitaxel_30min_R1 1 VESEEPQDNDFLSCMSRR 18 1 Q9UK28 Q9UK28 TMEM59L Transmembrane protein 59-like 3 VES(1)EEPQDNDFLS(1)CMS(1)RR 41.202 0.03022 3768800 509.03 565.69 671.85 772.05 537.11 626.95 407.9 319.82 584.08 385.64 TRUE FALSE 516.1579905 627.4539472 502.2331582 722.5341686 610.2734753 738.1307797 485.2968956 292.6492947 640.1834937 307.0463563 1.681042552 2.043515366 1.63569164 2.353176169 1.987561366 2.403971793 1.58053299 0.953111114 2.084973427 1 8.262312673 -7.971405664 10.66770899 1.3647878 2.013638644 0.411951572 0.366593405 0.45427418 166.2124533 0.146367459 0.098299784 1.07E-08 7.971405664 0.648850844 VETQS(ph)DEENGRACEMNGEECAEDLR ddPTM_K562_Paclitaxel_30min_R1 2 VETQSDEENGRACEMNGEECAEDLR 25 1 Q13422-5;Q13422-4;Q13422-3;Q13422-7;Q13422;Q13422-8 Q13422-5 IKZF1 DNA-binding protein Ikaros 1 VET(0.06)QS(0.94)DEENGRACEMNGEECAEDLR;VET(0.015)QS(0.985)DEENGRACEMNGEECAEDLR 86.987 0.00010679 94191000 922.07 627.02 1455.14 1112.79 844.6 1029.82 919.71 1106.23 793.49 1042.93 TRUE FALSE 934.9818248 695.480164 1087.77191 1041.42063 959.6488192 1212.444118 1094.220171 1012.248857 869.7082599 830.3802935 1.125968225 0.837544158 1.309968359 1.254149018 1.155673884 1.460107046 1.31773379 1.2190184 1.047361392 1 9.697628396 -5.771638008 24.99993805 1.239239936 0.981756167 0.303122191 0.142551047 196.1336684 480786.5252 0.036638056 0.077660884 1.69E-06 5.771638008 -0.257483769 VEVAHIS(ph)GGE ddPTM_K562_Paclitaxel_30min_R1 2 VEVAHISGGE 10 0 O95625 O95625 ZBTB11 Zinc finger and BTB domain-containing protein 11 1 VEVAHIS(1)GGE;VEVAHIS(1)GGE 115.23 1.99E-05 0 5055.6 4568.5 5705.7 5103 4169 4001.7 3949 4995.8 4118.9 5418 TRUE FALSE 5126.393998 5067.30428 4265.225468 4775.71642 4736.888382 4711.345308 4698.302135 4571.375607 4514.538749 4313.808626 1.188368433 1.174670626 0.988737758 1.107076561 1.09807569 1.092154455 1.089130868 1.059707559 1.046531995 1 12.07474646 -5.65222517 8.522033152 1.067620662 1.184455119 0.608827317 0.038585161 0.160768137 11.45303298 0.009611612 0.025562613 2.23E-06 5.65222517 0.116834457 VEVERDNLAEDIMR ddPTM_K562_Paclitaxel_30min_R1 2 VEVERDNLAEDIMR 14 1 P08670;B0YJC4 P08670 VIM Vimentin 0 ; 153.81 8.59E-05 121378000 4212.2 4291.4 5546.2 5449.1 4345.9 4151.1 4261.2 5331.3 5070.4 5502.7 FALSE TRUE 4271.183796 4759.949565 4145.993215 5099.619115 4937.885157 4887.239301 5069.740455 4878.372788 5557.434575 4381.24672 0.974878629 1.086437233 0.946304438 1.163965292 1.127050238 1.115490547 1.157145621 1.113466805 1.268459626 1 12.09712574 -6.272692225 24.97990609 1.139578653 1.010929812 0.424224899 0.070421831 642.8719366 1427093.752 0.018512267 0.027742118 5.34E-07 6.272692225 -0.128648841 VEVT(ph)PTVPR ddPTM_K562_Paclitaxel_30min_R1 2 VEVTPTVPR 9 0 Q8IXS8 Q8IXS8 FAM126B Protein FAM126B 1 VEVT(0.999)PT(0.001)VPR;VEVT(0.999)PT(0.001)VPR 141.1 0.0018345 26614000 3101.9 3099.5 3644.2 3008.8 3249.4 2506.3 2853.3 3496.1 3498.3 3492.4 TRUE FALSE 3145.33617 3437.913892 2724.176639 2815.829035 3692.023293 2950.757115 3394.69878 3199.084483 3834.327346 2780.646963 1.131152646 1.236371944 0.97969166 1.012652477 1.327756936 1.061176465 1.220830557 1.150482073 1.378933535 1 11.44120487 -6.739747979 24.98220674 1.192501477 1.092547887 0.136389211 0.122970629 500.4334045 576351.8047 0.035569364 0.04587755 1.82E-07 6.739747979 -0.09995359 VFDKDGNGYISAAELR ddPTM_K562_Paclitaxel_30min_R1 2 VFDKDGNGYISAAELR 16 1 G3V361;A0A590UJI2;Q96HY3;P0DP25;P0DP24;P0DP23;E7EMB3 G3V361 CALM1;CALM2 0 ; 115.12 0.0055043 54614000 4363.8 4202.1 6884.8 4369.6 3484.6 3655 3363.9 4528.6 4841.5 5646.1 FALSE TRUE 4424.906663 4660.899489 5146.64709 4089.353414 3959.261515 4303.162931 4002.182464 4143.867163 5306.547707 4495.421721 0.984314028 1.036810288 1.144864133 0.909670698 0.880731945 0.957232313 0.890279647 0.921797202 1.180433792 1 12.13424075 -6.279780434 24.68146892 0.952936579 1.053477581 0.17848783 0.089096749 1076.989077 1449296.402 0.025440664 0.037827683 5.25E-07 6.279780434 0.100541001 VFDLQFSTDS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 VFDLQFSTDSPR 12 0 Q15003;C9JZP1;C9J470;E9PHA2 Q15003 NCAPH Condensin complex subunit 2 1 VFDLQFS(0.004)T(0.171)DS(0.825)PR 116.79 0.0037553 21196000 602.07 531.02 812.35 617.97 454.61 600.18 664 534.23 555.91 875.75 TRUE FALSE 610.5008375 588.9985594 607.2621955 578.3361701 516.5355786 706.6134961 789.9905337 488.8438269 609.3076394 697.2716693 0.875556637 0.844718903 0.870911902 0.829427317 0.740795305 1.013397686 1.132973801 0.701080868 0.873845398 1 9.445577055 -7.267665667 24.97046361 0.93737174 0.834960462 0.206009657 0.109437136 987.9458198 3962135.478 0.040526272 0.036621782 5.40E-08 7.267665667 -0.102411279 VFDQQSS(ph)PMVTR ddPTM_K562_Paclitaxel_30min_R1 3 VFDQQSSPMVTR 12 0 O15357;A0A0A0MTP6 O15357 INPPL1 "Phosphatidylinositol 3,4,5-trisphosphate 5-phosphatase 2" 1 VFDQQS(0.029)S(0.971)PMVTR;VFDQQS(0.123)S(0.873)PMVT(0.004)R;VFDQQS(0.03)S(0.97)PMVTR 193.98 0.00010078 141483000 5600.9 6015.4 7899.5 6927.1 5289 5439.5 5460.9 6550.6 5620.5 6889.1 TRUE FALSE 5679.32988 6672.181715 5905.173525 6482.826811 6009.451344 6404.118951 6497.077267 5994.085642 6160.374138 5485.097638 1.0354109 1.216419862 1.076584942 1.181898161 1.095596057 1.167548761 1.184496192 1.092794703 1.123111117 1 12.42130159 -9.490730957 1.232086525 1.000139286 1.136884193 0.347642062 0.053737601 2.13715599 4.322296845 0.047313068 0.014280948 3.23E-10 9.490730957 0.136744907 VFGALGPIGPSS(ph)PGLTLGGLAVSEHR ddPTM_K562_Paclitaxel_30min_R1 1 VFGALGPIGPSSPGLTLGGLAVSEHR 26 0 Q86YD1;M0QZB9;M0QYQ4;M0QYH7;A0A0C4DGR2;M0QY25;Q86YD1-2 Q86YD1 PTOV1 Prostate tumor-overexpressed gene 1 protein 1 VFGALGPIGPS(0.212)S(0.648)PGLT(0.138)LGGLAVS(0.002)EHR 71.903 0.00041443 12254000 323.63 424.84 465.21 362.43 343.77 237.04 633.57 511.78 451.13 561.78 TRUE FALSE 328.1618185 471.2254679 347.7619819 339.185362 390.5972941 279.0757158 753.7866 468.3010946 494.4630522 447.2889276 0.733668549 1.053514717 0.777488465 0.75831379 0.873255004 0.623927172 1.685234204 1.046976721 1.105466784 1 8.805063236 -7.730950267 24.99998969 1.213335209 0.814685239 0.487285041 0.203837181 172.157336 141162.7397 0.07564507 0.058587385 1.86E-08 7.730950267 -0.39864997 VFGAPNVVEDEIDQYLS(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 VFGAPNVVEDEIDQYLSK 18 0 A0A0D9SFI9;I3L4U9;Q8TAT6;Q8TAT6-2 A0A0D9SFI9 NPLOC4 Nuclear protein localization protein 4 homolog 1 VFGAPNVVEDEIDQY(0.336)LS(0.664)K 78.326 0.02071 0 1499.4 1246.1 2339.9 1678.6 1405.2 1409 1095.7 1851 1633.4 1836.5 TRUE FALSE 1520.396226 1382.153412 1749.163305 1570.942109 1596.61203 1658.866367 1303.603355 1693.745996 1790.295368 1462.220292 1.039786026 0.945242943 1.196237882 1.074353925 1.091909365 1.134484575 0.891523228 1.158338457 1.22436775 1 10.51394496 -5.741209827 24.99996522 1.095151995 0.992514489 0.164118544 0.093747287 446.254972 551479.9275 0.023799094 0.062795953 1.81E-06 5.741209827 -0.102637506 VFLQGPAPVGT(ph)PSFNR ddPTM_K562_Paclitaxel_30min_R1 1 VFLQGPAPVGTPSFNR 16 0 Q8IWZ3-6;H7C0V5;Q8IWZ3;Q8IWZ3-4;H0Y785;H0Y472;H0Y4P6 Q8IWZ3-6 ANKHD1;ANKHD1-EIF4EBP3 Ankyrin repeat and KH domain-containing protein 1 1 VFLQGPAPVGT(0.934)PS(0.066)FNR 137.91 1.13E-07 12843000 1355.7 1087.6 1387 1189 970.84 1078.3 1310.7 1985.9 1421.6 1930.5 TRUE FALSE 1374.683983 1206.347846 1036.834696 1112.742862 1103.084844 1269.521365 1559.398483 1817.185399 1558.151032 1537.06304 0.894357581 0.784839538 0.674555739 0.72394094 0.717657517 0.825939686 1.014531247 1.182245199 1.013719666 1 10.58596062 -7.745440874 2.983956968 1.077699827 0.755073303 0.79296307 0.071472081 0.108638367 1.987046199 0.032291902 0.022299042 1.80E-08 7.745440874 -0.322626524 VFPLS(ph)PASNLR ddPTM_K562_Paclitaxel_30min_R1 1 VFPLSPASNLR 11 0 A0A2R8YH03;Q5VWN6;J3KPH3 A0A2R8YH03 FAM208B Protein FAM208B 1 VFPLS(0.942)PAS(0.058)NLR 142.76 0.00050054 19808000 818.02 965.69 1114.8 1100.1 992.05 882.92 681.38 907.76 755.71 1027.2 TRUE FALSE 829.4748038 1071.1273 833.3549523 1029.54451 1127.184006 1039.493465 810.668298 830.6401219 828.2993221 817.8560762 1.014206323 1.309677009 1.018950616 1.258833357 1.378218049 1.270998034 0.991211439 1.015631168 1.012769051 1 9.675703174 -7.768463432 24.99654472 1.006205462 1.214469513 0.45313822 0.109439453 157.2012066 559426.6314 0.046172871 0.031880185 1.70E-08 7.768463432 0.208264051 VFPSVAS(ph)PQK ddPTM_K562_Paclitaxel_30min_R1 2 VFPSVASPQK 10 0 Q9BXL5 Q9BXL5 HEMGN Hemogen 1 VFPS(0.009)VAS(0.991)PQK;VFPS(0.024)VAS(0.976)PQK 150.51 0.00029302 1774070000 9505.3 8304.5 16170.8 10813.8 7270.7 6885.2 7779.1 11672.3 6334.3 12950.9 TRUE FALSE 9638.403526 9211.213394 12088.28154 10120.25127 8261.092434 8106.193547 9255.143615 10680.66526 6942.737817 10311.49947 0.934723757 0.89329524 1.172310737 0.98145292 0.801153359 0.786131403 0.897555554 1.035801368 0.673300507 1 13.33196652 -6.650855908 6.894244937 0.865457365 1.003259656 0.223405361 0.118732285 0.336494012 19.2011461 0.035181133 0.045454454 2.23E-07 6.650855908 0.137802291 VGAHAGEYGAEALER ddPTM_K562_Paclitaxel_30min_R1 2 VGAHAGEYGAEALER 15 0 P69905;A0A2R8Y7C0 P69905 HBA1 Hemoglobin subunit alpha 0 ; 197.38 5.99E-09 41410000 4355.1 4694 5738 4594.8 4207.4 3857.2 3798.9 5191.7 4749.8 5724.1 FALSE TRUE 4416.084837 5206.506794 4289.370933 4300.110094 4780.519112 4541.220262 4519.721443 4750.632679 5206.039513 4557.525278 0.968965517 1.142397788 0.941162291 0.943518649 1.04892871 0.996422397 0.991705184 1.042371109 1.142295258 1 12.15403494 -8.523279552 24.99972546 1.07820949 1.007350273 0.150742023 0.063626417 25.7122215 1603096.455 0.041179786 0.015879558 3.00E-09 8.523279552 -0.070859217 VGAVAAATS(ph) ddPTM_K562_Paclitaxel_30min_R1 1 VGAVAAATS 9 0 H0YER0;H0Y5F5;B1ANR0;Q13310-2;Q13310;Q13310-3 H0YER0 PABPC4 Polyadenylate-binding protein;Polyadenylate-binding protein 4 1 VGAVAAAT(0.113)S(0.887) 106.6 0.0060108 0 3671.4 4381 5350.8 4631.6 3628.8 3372.4 3677.7 4565 4494.7 5132.2 TRUE FALSE 3722.810927 4859.332396 3999.924362 4334.549906 4123.103996 3970.447789 4375.524376 4177.174756 4926.436018 4086.254823 0.911056967 1.189189761 0.978872962 1.060763485 1.009017835 0.971659371 1.070790875 1.022250187 1.205611552 1 11.99656346 VGDGDLS(ph)AEEIPENEVSLR ddPTM_K562_Paclitaxel_30min_R1 2 VGDGDLSAEEIPENEVSLR 19 0 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 VGDGDLS(1)AEEIPENEVSLR;VGDGDLS(1)AEEIPENEVSLR 162.82 5.70E-12 102901000 3881.8 3895.5 5643.6 4313.4 3720.5 3128.5 3114 4763.3 3600.6 4718 TRUE FALSE 3936.157176 4320.823864 4218.803381 4036.75783 4227.295089 3683.295549 3704.865244 4358.627933 3946.453718 3756.46901 1.047834327 1.150235461 1.123076849 1.074614969 1.125337405 0.98052068 0.986262693 1.160299186 1.050575343 1 11.87516149 -7.233152217 24.98869416 1.042470959 1.106179132 0.279442758 0.054538161 1116.509955 986318.2521 0.018715082 0.018711751 5.85E-08 7.233152217 0.063708174 VGDGDLS(ph)AEEIPENEVSLRR ddPTM_K562_Paclitaxel_30min_R1 4 VGDGDLSAEEIPENEVSLRR 20 1 Q14684-2;Q14684 Q14684-2 RRP1B Ribosomal RNA processing protein 1 homolog B 1 VGDGDLS(0.998)AEEIPENEVS(0.002)LRR;VGDGDLS(0.617)AEEIPENEVS(0.383)LRR;VGDGDLS(0.896)AEEIPENEVS(0.104)LRR;VGDGDLS(1)AEEIPENEVSLRR 193.27 5.36E-17 149060000 6744.6 5554.6 8632.4 6560.9 6107.8 5225 4874.7 6724.9 6749.9 7923.1 TRUE FALSE 6839.045209 6161.070012 6453.043856 6140.11324 6939.785766 6151.580387 5799.648877 6153.577769 7398.258054 6308.367871 1.084122763 0.976650401 1.02293398 0.973328342 1.100092117 0.97514611 0.919358065 0.975462734 1.172768964 1 12.62305108 -8.730581851 24.99912632 1.086384928 1.001626406 0.209645112 0.064388005 257.0253761 208229.0499 0.042571312 0.016086776 1.86E-09 8.730581851 -0.084758521 VGDPPQPLPEEPMEVQGAERAS(ph)PEPQR ddPTM_K562_Paclitaxel_30min_R1 2 VGDPPQPLPEEPMEVQGAERASPEPQR 27 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 VGDPPQPLPEEPMEVQGAERAS(1)PEPQR;VGDPPQPLPEEPMEVQGAERAS(1)PEPQR 76.668 8.29E-05 132910000 1350.56 1277.65 1859.23 1822.42 1589.59 1244.84 1368.98 1519.36 850.77 1641.87 TRUE FALSE 1369.472007 1417.148148 1389.844392 1705.538138 1806.11907 1465.594896 1628.736808 1390.280884 932.4902598 1307.255993 1.047592831 1.084063225 1.063176914 1.304670353 1.381610855 1.121123103 1.245920323 1.063510814 0.713318788 1 10.35232597 -8.563280669 5.939931292 0.860291224 1.179311418 0.526911573 0.120726853 0.15156678 13.65951572 0.08723156 0.032468926 2.73E-09 8.563280669 0.319020194 VGDPPQPLPEEPMEVQGAERAS(ph)PEPQRENAS(ph)PAPGTTAEEAMSR ddPTM_K562_Paclitaxel_30min_R1 1 VGDPPQPLPEEPMEVQGAERASPEPQRENASPAPGTTAEEAMSR 44 2 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 2 VGDPPQPLPEEPMEVQGAERAS(0.991)PEPQRENAS(0.742)PAPGT(0.131)T(0.131)AEEAMS(0.006)R 42.74 0.0022835 83220000 282.63 184.25 422.53 434.16 232.98 144.77 265.99 313.43 355.92 420.46 TRUE FALSE 286.587692 204.3670381 315.8570757 406.3149208 264.7158204 170.4429268 316.4602139 286.8021651 390.1077063 334.7700212 0.856073345 0.61046995 0.943504662 1.21371358 0.790739324 0.509134379 0.945306311 0.856714004 1.165300599 1 8.38702653 -8.715946531 8.883058243 1.082133288 0.839307553 0.215855165 0.184456414 0.428744787 78.27538979 0.134790135 0.050087192 1.92E-09 8.715946531 -0.242825735 VGDPPQPLPEEPMEVQGAERAS(ph)PEPQRENASPAPGTTAEEAMSR ddPTM_K562_Paclitaxel_30min_R1 1 VGDPPQPLPEEPMEVQGAERASPEPQRENASPAPGTTAEEAMSR 44 2 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;H0Y710 P46379-3 BAG6;BAT3 Large proline-rich protein BAG6 1 VGDPPQPLPEEPMEVQGAERAS(0.872)PEPQRENAS(0.026)PAPGT(0.031)T(0.033)AEEAMS(0.038)R 47.797 0.00039771 316600000 183.39 164.7 357.81 186.42 198.38 220.7 182.76 288.05 127.19 282.3 TRUE FALSE 185.9580258 182.682503 267.4764402 174.4638556 225.4027146 259.8380462 217.4377559 263.5783545 139.4071678 224.767105 0.827336481 0.812763518 1.190015951 0.776198348 1.002827858 1.156032357 0.967391362 1.172673174 0.620229405 1 7.8122871 VGDSTPVSEKPVSAAVDANASES(ph)P ddPTM_K562_Paclitaxel_30min_R1 2 VGDSTPVSEKPVSAAVDANASESP 24 1 Q9H8Y8-2;Q9H8Y8;Q9H8Y8-3 Q9H8Y8-2 GORASP2 Golgi reassembly-stacking protein 2 1 VGDSTPVSEKPVSAAVDANASES(1)P;VGDSTPVSEKPVSAAVDANAS(0.003)ES(0.997)P 128.36 1.32E-10 81614000 9655.6 8498.9 17565 11265.3 8418.4 8007.4 7500.8 11081.3 7701 13199.3 TRUE FALSE 9790.80819 9426.838643 13130.49851 10542.79408 9565.128605 9427.399961 8924.037643 10139.8744 8440.715459 10509.27541 0.931634942 0.89700177 1.249419964 1.003189436 0.910160618 0.897055181 0.849158224 0.964850001 0.803168166 1 13.35937558 -6.736523922 4.663673088 0.898406186 1.029922543 0.241450373 0.100993811 0.276353481 14.40812593 0.031439698 0.039350886 1.83E-07 6.736523922 0.131516357 VGDTSLDPNDFDFT(ph)VTGRGSPSRR ddPTM_K562_Paclitaxel_30min_R1 2 VGDTSLDPNDFDFTVTGRGSPSRR 24 2 I6LM39;A0A087X1U4;P51608;P51608-2 I6LM39 MECP2 Methyl-CpG-binding protein 2 1 VGDTSLDPNDFDFT(0.691)VT(0.227)GRGS(0.067)PS(0.015)RR;VGDTSLDPNDFDFT(0.696)VT(0.175)GRGS(0.065)PS(0.065)RR 73.865 0.0025816 319230000 3268.2 3116.1 3954.6 3675 3259.2 2425.21 2803.7 3592.1 3648.9 3686 TRUE FALSE 3313.964883 3456.326336 2956.21232 3439.301949 3703.158219 2855.286942 3335.687439 3286.928684 3999.393149 2934.791177 1.129199552 1.177707758 1.007299035 1.171906872 1.261813191 0.972909747 1.13660129 1.119987245 1.362752205 1 11.51904214 VGEDEDGS(ph)DEEVVHNEDIHFEPIVSLPEVEVK ddPTM_K562_Paclitaxel_30min_R1 3 VGEDEDGSDEEVVHNEDIHFEPIVSLPEVEVK 32 0 P49792 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 VGEDEDGS(1)DEEVVHNEDIHFEPIVSLPEVEVK;VGEDEDGS(0.996)DEEVVHNEDIHFEPIVS(0.004)LPEVEVK;VGEDEDGS(0.935)DEEVVHNEDIHFEPIVS(0.065)LPEVEVK 65.093 0.00017672 126954000 7497.3 5410.7 14451.7 7472.7 5316.3 5063.08 4752.4 7726.8 5698.5 11412.5 TRUE FALSE 7602.285331 6001.458524 10803.1896 6993.434469 6040.470066 5960.946149 5654.143091 7070.360111 6245.866387 9086.626236 0.836645542 0.660471595 1.188910969 0.76964038 0.664764887 0.656013133 0.62224889 0.778106189 0.687369132 1 13.14952902 -6.50937554 24.96906235 0.714376351 0.889758933 0.167191937 0.156720273 992.6515762 1835534.268 0.043703494 0.061742867 3.09E-07 6.50937554 0.175382582 VGGHPT(ph)SPAALSR ddPTM_K562_Paclitaxel_30min_R1 2 VGGHPTSPAALSR 13 0 Q96B18;A0A0C4DFP1 Q96B18 DACT3 Dapper homolog 3 1 VGGHPT(0.457)S(0.457)PAALS(0.086)R;VGGHPT(0.983)S(0.017)PAALSR 90.229 0.016623 8726600 4178.4 4257.6 5552.8 4242.6 4340.9 3742.1 3616.3 4435.6 3795.1 5180.8 TRUE FALSE 4236.910491 4722.459166 4150.926964 3970.498625 4932.204072 4405.708893 4302.474047 4058.768094 4159.636312 4124.950116 1.027142237 1.144852431 1.006297494 0.962556761 1.195700295 1.068063557 1.043036625 0.983955679 1.008408876 1 12.01016096 -8.06323849 3.513305126 0.99754094 1.068773555 0.198998509 0.062592087 0.419755541 10.14599902 0.032443554 0.01826131 8.64E-09 8.06323849 0.071232615 VGGPTEMLRGMYLT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 VGGPTEMLRGMYLTR 15 1 P49796-7;P49796-8 P49796-7 1 VGGPTEMLRGMY(0.01)LT(0.99)R 58.274 0.02926 0 0 148.22 268.75 105.83 228.89 210.04 0 0 61.414 133.28 TRUE FALSE 0 164.4031608 200.9007386 99.04253748 260.0686931 247.2876449 0 0 67.31308911 106.1174628 0 1.549256423 1.893192065 0.933329302 2.450762449 2.330319989 0 0 0.63432622 1 6.729518278 -7.774598001 24.99920541 0.325248025 1.558960097 0.368125147 0.713181471 245.0629993 465574.804 0.30494332 0.20697216 1.68E-08 7.774598001 1.233712072 VGGS(ph)DEEASGIPSR ddPTM_K562_Paclitaxel_30min_R1 6 VGGSDEEASGIPSR 14 0 A8MV53;A0A0A6YYI3;A0A0B4J1V8;Q9NQ55-2;Q9NQ55;Q9NQ55-3;H7C446 A8MV53 PPAN;PPAN-P2RY11 Suppressor of SWI4 1 homolog 1 VGGS(1)DEEASGIPSR;VGGS(1)DEEASGIPSR;VGGS(0.999)DEEAS(0.001)GIPSR;VGGS(1)DEEASGIPSR;VGGS(1)DEEASGIPSR;VGGS(1)DEEASGIPSR 196.18 8.29E-09 2225597000 4385.36 3640.83 5988.4 4355.53 3421.82 3673.86 3340.93 4935.61 4184.85 4932.47 TRUE FALSE 4446.76857 4038.348132 4476.554356 4076.1858 3887.929816 4325.367487 3974.854027 4516.299123 4586.823541 3927.229907 1.13229138 1.028294301 1.139875806 1.037928998 0.989992923 1.10137873 1.012126644 1.149996112 1.167953914 1 11.93929634 -8.273908933 24.97566259 1.119231258 1.062428349 0.077731268 0.062829179 1527.499812 3059459.307 0.032516618 0.01580636 5.32E-09 8.273908933 -0.056802909 VGGSEVTELSGSGHDS(ph)SYYDDRSDHERER ddPTM_K562_Paclitaxel_30min_R1 1 VGGSEVTELSGSGHDSSYYDDRSDHERER 29 2 Q9H8M2 Q9H8M2 BRD9 Bromodomain-containing protein 9 1 VGGSEVT(0.004)ELS(0.112)GS(0.112)GHDS(0.193)S(0.193)Y(0.173)Y(0.173)DDRS(0.039)DHERER 57.432 0.0010244 18492000 594.85 687.6 1009.3 775.84 595.11 545.34 775.53 773.05 768.31 948.66 TRUE FALSE 603.1797353 762.6744933 754.4897321 726.0810949 676.1740573 642.048392 922.682769 707.3745773 842.1096084 755.3225713 0.798572369 1.009733486 0.998897373 0.961286108 0.895212301 0.850032048 1.221574469 0.936519845 1.114900627 1 9.560949089 -7.737419283 24.99999791 1.062958909 0.927560484 0.38522037 0.091913748 261.74656 272424.3644 0.034228673 0.026499812 1.83E-08 7.737419283 -0.135398425 VGGSS(ph)VDLHR ddPTM_K562_Paclitaxel_30min_R1 2 VGGSSVDLHR 10 0 O60716;O60716-21;O60716-2;O60716-10;O60716-9;O60716-17;O60716-5;O60716-3;A0A669KB05;O60716-11;C9JZR2;O60716-18;O60716-19;O60716-13;O60716-23;O60716-14;O60716-12;O60716-7;O60716-4;O60716-22;O60716-6;O60716-8;A0A669KB62;O60716-16;O60716-15;O60716-24;O60716-20 O60716 CTNND1 Catenin delta-1 1 VGGS(0.434)S(0.566)VDLHR;VGGS(0.422)S(0.578)VDLHR 93.011 0.010836 11695700 9886.8 9013.7 10186.7 7766.8 6574.8 7789.2 7731.8 10350.2 12119.7 13062.2 TRUE FALSE 10025.2457 9997.846248 7614.941597 7268.672211 7470.399072 9170.505254 9198.868687 9470.885906 13283.85134 10400.11647 0.963955138 0.961320604 0.732197723 0.698902962 0.718299559 0.881769476 0.884496699 0.910651908 1.277279094 1 13.34431206 -8.598969955 5.541380341 1.135513515 0.831915587 0.546659957 0.109068284 0.160728514 8.485855778 0.08263219 0.029924554 2.52E-09 8.598969955 -0.303597928 VGHMS(ph)SVELDDELLDPDMDPPHPFPK ddPTM_K562_Paclitaxel_30min_R1 1 VGHMSSVELDDELLDPDMDPPHPFPK 26 0 P51798;H3BNG8 P51798 CLCN7 H(+)/Cl(-) exchange transporter 7 1 VGHMS(0.5)S(0.5)VELDDELLDPDMDPPHPFPK 104.01 2.36E-06 24765000 1991.6 1640.1 3370.7 2434.5 1547.1 1179.5 1796.4 2602.9 2231.3 2396.3 TRUE FALSE 2019.488545 1819.171664 2519.725097 2278.362066 1757.841213 1388.667764 2137.257522 2381.767398 2445.626335 1907.932745 1.058469461 0.953477878 1.32065719 1.194152191 0.921332902 0.727838949 1.12019542 1.248349768 1.281819992 1 10.8977946 -10.67190947 5.988931189 0.999999999 1.087202516 0.023579182 0.174995719 2.59E-09 4.62E-10 0.185514343 0.044993837 2.13E-11 10.67190947 0.087202517 VGHMSS(ph)VELDDELLDPDMDPPHPFPK ddPTM_K562_Paclitaxel_30min_R1 1 VGHMSSVELDDELLDPDMDPPHPFPK 26 0 P51798;H3BNG8 P51798 CLCN7 H(+)/Cl(-) exchange transporter 7 1 VGHMS(0.211)S(0.789)VELDDELLDPDMDPPHPFPK 136.22 7.37E-15 28572000 3328.6 3037.7 5234.1 3388.7 3017.8 2548.8 2294 3272.1 3496.1 3791 TRUE FALSE 3375.21067 3369.366359 3912.68672 3171.363949 3428.875452 3000.793893 2729.274525 2994.114681 3831.916026 3018.392119 1.118214777 1.116278544 1.296281784 1.050679906 1.135994038 0.994169669 0.9042147 0.991956831 1.269522274 1 11.55956452 -6.832616593 1.858849373 1.027843107 1.163918896 0.209763092 0.105665481 0.522739844 3.720338644 0.038626301 0.048085396 1.47E-07 6.832616593 0.13607579 VGPAT(ph)PSAQVGK ddPTM_K562_Paclitaxel_30min_R1 1 VGPATPSAQVGK 12 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 VGPAT(0.963)PS(0.037)AQVGK 102.33 0.021351 4921300 1910.7 1573.2 3524 2146.1 1781.5 1399.7 1299.5 2088.9 1296.9 3174.7 TRUE FALSE 1937.455695 1744.967296 2634.322616 2008.458752 2024.170461 1647.917142 1546.073341 1911.434906 1421.47304 2527.694397 0.766491272 0.690339504 1.042183983 0.79458132 0.800797147 0.65194477 0.611653585 0.756196995 0.562359533 1 11.30360633 -7.125868878 4.638053597 0.695096062 0.826198796 0.111367262 0.138914223 0.424620072 14.18000255 0.045141801 0.045408624 7.48E-08 7.125868878 0.131102734 VGPATPS(ph)AQVGK ddPTM_K562_Paclitaxel_30min_R1 1 VGPATPSAQVGK 12 0 E7ETY2;Q13428-6;Q13428-7;A0A3B3IS06;H0Y8Y7;Q13428-5;Q13428;Q13428-3;Q13428-4;Q13428-2;Q13428-8;A0A6I8PRA0 E7ETY2;Q13428 TCOF1 Treacle protein 1 VGPAT(0.416)PS(0.584)AQVGK 89.189 0.01932 5322200 2127.8 1683.9 3675.1 2452.1 1674.1 1709.9 1513.2 2404.2 1114.8 3171.1 TRUE FALSE 2157.595765 1867.753897 2747.275552 2294.833281 1902.140763 2013.126757 1800.321801 2199.948203 1221.881521 2524.828079 0.854551556 0.739754881 1.088104008 0.908906749 0.75337437 0.797332212 0.713047282 0.871325942 0.483946424 1 11.30196944 -6.761492817 24.99969204 0.761939194 0.900129337 0.154592623 0.145891622 2.565867261 1200241.373 0.042712816 0.051611643 1.73E-07 6.761492817 0.138190144 VGS(ph)AQPSPPDDLDAGGLAQR ddPTM_K562_Paclitaxel_30min_R1 1 VGSAQPSPPDDLDAGGLAQR 20 0 Q8N3D4;A0A0U1RQH4;E9PIH6;H0YDZ9 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 VGS(0.843)AQPS(0.157)PPDDLDAGGLAQR 70.986 0.01141 12163000 1357.1 1231 1943.9 1487 1220.2 1649.9 1097.9 1222.3 1471.7 1606 TRUE FALSE 1376.103587 1365.404743 1453.138403 1391.630476 1386.411898 1942.486599 1306.220794 1118.457986 1613.063361 1278.696318 1.076177015 1.067810021 1.136421824 1.088319764 1.084238594 1.519114876 1.02152542 0.87468617 1.26149058 1 10.32045796 VGS(ph)LDNVGHLPAGGAVK ddPTM_K562_Paclitaxel_30min_R1 4 VGSLDNVGHLPAGGAVK 17 0 E7EVA0;P27816;P27816-2;P27816-6;P27816-5;P27816-4;H0Y2V1;H7C4C5;F8W9U4 E7EVA0 MAP4 Microtubule-associated protein;Microtubule-associated protein 4 1 VGS(1)LDNVGHLPAGGAVK;VGS(1)LDNVGHLPAGGAVK;VGS(1)LDNVGHLPAGGAVK;VGS(1)LDNVGHLPAGGAVK 166.52 5.70E-08 86317700 20669.2 14042.5 35036.8 20162.6 14101.2 11104.02 10632.9 16227 16248.3 21538.6 TRUE FALSE 20958.63257 15575.70764 26191.32651 18869.46108 16022.02218 13073.16204 12650.43727 14848.41506 17809.02181 17149.0215 1.222147431 0.908256348 1.52727819 1.100322901 0.934282004 0.762326996 0.737676915 0.865846198 1.038486179 1 14.06583864 -6.734463637 3.453265263 0.864194935 1.203549187 0.449552135 0.1649035 0.210935668 5.246727604 0.051945595 0.065435364 1.84E-07 6.734463637 0.339354252 VGS(ph)PLTLTDAQTR ddPTM_K562_Paclitaxel_30min_R1 1 VGSPLTLTDAQTR 13 0 A0A0D9SF60;Q99569-2;Q99569 A0A0D9SF60 PKP4 Plakophilin-4 1 VGS(1)PLTLTDAQTR 163.62 0.00065628 32651000 1120.8 1054.7 1632.9 1279.1 1294.6 845.39 1067.1 1066.7 1304.3 1790.4 TRUE FALSE 1136.494658 1169.855713 1220.6542 1197.064251 1470.946438 995.3080466 1269.576654 976.0771769 1429.583843 1425.515497 0.797251703 0.820654504 0.856289673 0.83974131 1.031869833 0.698209208 0.890608806 0.684718741 1.002853947 1 10.47726801 -8.808776923 24.76040245 1.001428494 0.833180142 0.361600985 0.092229342 134.9372929 70576.64112 0.084944379 0.021932775 1.55E-09 8.808776923 -0.168248352 VGSAAPSRS(ph)PSETGR ddPTM_K562_Paclitaxel_30min_R1 1 VGSAAPSRSPSETGR 15 1 Q9UBU6 Q9UBU6 FAM8A1 Protein FAM8A1 1 VGSAAPS(0.043)RS(0.927)PS(0.013)ET(0.017)GR 75.02 0.025814 7703500 512.45 510.11 632.95 536.72 551.52 454.75 586.61 644.77 526.35 636.24 TRUE FALSE 519.625881 565.8055349 473.1539443 502.2971815 626.6463613 535.3935275 697.9161852 589.992764 576.9082693 506.5739388 1.025765128 1.116925865 0.934027411 0.991557487 1.237028424 1.056891179 1.377718299 1.164672556 1.138843168 1 8.984629048 -6.753824234 24.99942998 1.176237149 1.018270043 0.313472849 0.104271201 197.1415674 647184.0718 0.030358669 0.03842185 1.76E-07 6.753824234 -0.157967106 VGSAQPS(ph)PPDDLDAGGLAQR ddPTM_K562_Paclitaxel_30min_R1 1 VGSAQPSPPDDLDAGGLAQR 20 0 Q8N3D4;A0A0U1RQH4;E9PIH6;H0YDZ9 Q8N3D4 EHBP1L1 EH domain-binding protein 1-like protein 1 1 VGS(0.198)AQPS(0.802)PPDDLDAGGLAQR 105.38 0.00039989 9044900 1305.9 1204.2 1997.5 1670.4 1288 1159.8 1092.4 1395.3 1246.9 1763.2 TRUE FALSE 1324.186629 1335.678628 1493.20642 1563.26802 1463.447406 1365.474246 1299.677197 1276.760556 1366.670316 1403.858872 0.943247683 0.951433691 1.063644252 1.113550693 1.042446242 0.972657774 0.925789068 0.909465033 0.973509762 1 10.4551822 -7.441911693 4.281745175 0.94494889 1.025756041 0.289365681 0.052232676 0.297710459 9.995710524 0.021539723 0.018458439 3.61E-08 7.441911693 0.080807151 VGSGQGGS(ph)PCWK ddPTM_K562_Paclitaxel_30min_R1 1 VGSGQGGSPCWK 12 0 A0A669KBI7;Q9UMN6;Q9UMN6-2 A0A669KBI7 KMT2B Histone-lysine N-methyltransferase 2B 1 VGS(0.002)GQGGS(0.998)PCWK 91.307 0.017111 7074800 993.68 610.75 1589.8 1065.2 789.66 786.09 635.23 934.36 807.99 1177.8 TRUE FALSE 1007.594586 677.4337504 1188.435328 996.8828397 897.2250611 925.4920242 755.7615764 854.9802859 885.6010497 937.7637135 1.074465317 0.722392795 1.267307863 1.063042668 0.956770931 0.986913879 0.805918981 0.911722509 0.944375472 1 9.873080645 -7.285055688 2.296172392 0.910367265 1.021882249 0.107012157 0.134140442 0.704123877 7.300125603 0.05310288 0.048223339 5.19E-08 7.285055688 0.111514984 VGVASEETPQT(ph)SSSSARPGTPSDHQSQEASQFER ddPTM_K562_Paclitaxel_30min_R1 1 VGVASEETPQTSSSSARPGTPSDHQSQEASQFER 34 1 Q6Y7W6-3 Q6Y7W6-3 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 VGVASEET(0.003)PQT(0.202)S(0.186)S(0.186)S(0.186)S(0.186)ARPGT(0.049)PS(0.002)DHQSQEASQFER 68.733 8.23E-05 10692000 589.14 474.85 754.15 630.22 632.37 573.4 607.43 661.85 695.56 627.64 TRUE FALSE 597.3897777 526.6957288 563.7555053 589.80051 718.5095001 675.0844391 722.6866715 605.6217114 762.3716458 499.7266235 1.195433162 1.053967718 1.128127818 1.180246323 1.437805125 1.350907491 1.446164038 1.211906036 1.525577406 1 8.964995271 -6.607851438 5.488130037 1.345657807 1.123950497 0.302564417 0.14095119 0.217058748 10.71652144 0.038851202 0.050556872 2.47E-07 6.607851438 -0.22170731 VGVEASEETPQT(ph)SSSSARPGTPS(ph)DHQSQEASQFER ddPTM_K562_Paclitaxel_30min_R1 1 VGVEASEETPQTSSSSARPGTPSDHQSQEASQFER 35 1 I1E4Y6;Q6Y7W6;Q6Y7W6-4;Q6Y7W6-5;E7ESB6;C9JHW1 I1E4Y6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 2 VGVEASEET(0.004)PQT(0.287)S(0.287)S(0.287)S(0.287)S(0.287)ARPGT(0.154)PS(0.37)DHQS(0.018)QEAS(0.018)QFER 47.383 0.0054014 5921300 465.29 586.27 631.28 640.38 464.35 591 544.57 663.46 612.91 896.62 TRUE FALSE 471.8054955 650.2809412 471.9055564 599.308893 527.6023315 695.8055519 647.8993147 607.0949318 671.7827441 713.8883518 0.660895355 0.910900058 0.661035518 0.83949947 0.739054406 0.974669989 0.907563925 0.850405992 0.941019338 1 9.479554652 -7.256721415 24.98869251 0.923684229 0.769199411 0.535670569 0.079820305 339.9926063 1800772.798 0.025102029 0.024313824 5.54E-08 7.256721415 -0.154484819 VGVEASEETPQT(ph)SSSSARPGTPSDHQSQEASQFER ddPTM_K562_Paclitaxel_30min_R1 2 VGVEASEETPQTSSSSARPGTPSDHQSQEASQFER 35 1 I1E4Y6;Q6Y7W6;Q6Y7W6-4;Q6Y7W6-5;E7ESB6;C9JHW1 I1E4Y6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 VGVEASEET(0.001)PQT(0.164)S(0.164)S(0.164)S(0.164)S(0.164)ARPGT(0.155)PS(0.014)DHQS(0.003)QEAS(0.005)QFER;VGVEASEET(0.001)PQT(0.198)S(0.198)S(0.198)S(0.198)S(0.198)ARPGT(0.006)PS(0.002)DHQSQEASQFER 72.469 6.81E-06 825420000 1782.11 1761.1 2724.22 2337.17 1832.08 2063.77 1798.29 2159.65 2055.57 2040.8 TRUE FALSE 1807.065038 1953.382854 2036.456968 2187.274377 2081.640313 2429.750633 2139.50614 1976.174252 2253.016683 1624.88384 1.112119521 1.202167691 1.253293878 1.346111226 1.281101001 1.49533805 1.316713286 1.21619417 1.386570921 1 10.66612087 -5.586397456 1.632380332 1.309517621 1.099942766 0.163841188 0.121740798 0.859497949 3.477375524 0.033280288 0.236087485 2.59E-06 5.586397456 -0.209574855 VGVEASEETPQTS(ph)SSSARPGTPSDHQSQEASQFER ddPTM_K562_Paclitaxel_30min_R1 1 VGVEASEETPQTSSSSARPGTPSDHQSQEASQFER 35 1 I1E4Y6;Q6Y7W6;Q6Y7W6-4;Q6Y7W6-5;E7ESB6;C9JHW1 I1E4Y6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 VGVEASEET(0.003)PQT(0.136)S(0.173)S(0.173)S(0.173)S(0.173)ARPGT(0.136)PS(0.033)DHQS(0.001)QEAS(0.001)QFER 68.434 1.10E-05 12195000 1897.4 1679 2236.1 2155.4 1799.2 1390.9 1335.9 1918.2 1428.6 2302.2 TRUE FALSE 1923.969454 1862.318898 1671.568899 2017.162291 2044.281501 1637.556586 1589.380051 1755.236937 1565.823413 1833.010376 1.049622784 1.015989283 0.911925497 1.100464197 1.115259099 0.893370058 0.867087318 0.95757065 0.854235979 1 10.83999924 -7.28185891 24.99919343 0.908840613 1.033786755 0.475991137 0.064923276 762.6597614 933704.7901 0.023483506 0.020737585 5.23E-08 7.28185891 0.124946142 VGVEASEETPQTSSSSARPGT(ph)PSDHQSQEASQFER ddPTM_K562_Paclitaxel_30min_R1 1 VGVEASEETPQTSSSSARPGTPSDHQSQEASQFER 35 1 I1E4Y6;Q6Y7W6;Q6Y7W6-4;Q6Y7W6-5;E7ESB6;C9JHW1 I1E4Y6 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 VGVEASEETPQT(0.045)S(0.062)S(0.16)S(0.16)S(0.16)ARPGT(0.298)PS(0.115)DHQS(0.001)QEASQFER 79.299 1.01E-06 566690000 1625.7 1485.3 2166.1 1654.3 1468 1382.4 1424.2 2052.5 1599.9 1878.2 TRUE FALSE 1648.464816 1647.470077 1619.241265 1548.200602 1667.966453 1627.54923 1694.434515 1878.127314 1753.577544 1495.421809 1.102341029 1.10167584 1.082799017 1.035293583 1.115381923 1.088354617 1.133081319 1.255918098 1.172630714 1 10.54633676 -7.903072949 4.32095856 1.166391633 1.08715676 0.1101169 0.063124727 0.30411931 10.20420604 0.026519145 0.01738761 1.25E-08 7.903072949 -0.079234874 VGVSSKPDSS(ph)PVLSPGNK ddPTM_K562_Paclitaxel_30min_R1 1 VGVSSKPDSSPVLSPGNK 18 1 Q8N4C8-5;Q8N4C8-2;Q8N4C8-3;Q8N4C8-4;Q8N4C8 Q8N4C8-5 MINK1 Misshapen-like kinase 1 1 VGVSSKPDS(0.384)S(0.599)PVLS(0.016)PGNK 72.383 0.014248 25735000 2569 1717.5 5595.6 2474.3 2042.6 1755.1 1546.2 2588.1 2471.5 3783.1 TRUE FALSE 2604.973926 1905.022458 4182.921574 2315.609473 2320.836702 2066.342342 1839.583378 2368.224751 2708.898618 3012.102143 0.864835853 0.632456128 1.388705089 0.768768575 0.770503984 0.68601337 0.610730742 0.786236534 0.899338233 1 11.55655498 VHAYFAPVT(ph)PPPSVGGSR ddPTM_K562_Paclitaxel_30min_R1 2 VHAYFAPVTPPPSVGGSR 18 0 J3KTA1;Q96IG2-2;Q96IG2 J3KTA1 FBXL20 F-box/LRR-repeat protein 20 1 VHAYFAPVT(0.999)PPPSVGGS(0.001)R;VHAYFAPVT(1)PPPSVGGSR 114.3 0.00032685 57060000 2802.5 3310.9 3555.8 3424.6 2878.9 2727 3134.6 3892.1 2424.4 3666.7 TRUE FALSE 2841.743646 3672.395259 2658.094312 3204.961484 3271.05492 3210.595161 3729.373986 3561.441811 2657.274453 2919.424527 0.973391715 1.257917519 0.91048571 1.097805905 1.120445105 1.099735626 1.277434628 1.219912273 0.91020488 1 11.5114683 -4.966398517 15.52141884 1.107028865 0.529308571 0.082062821 0.123971971 3179697.348 42508076.79 0.030344139 49005457.94 1.08E-05 4.966398517 -0.577720294 VHDRS(ph)EEEEEEEEEEEEEQPR ddPTM_K562_Paclitaxel_30min_R1 3 VHDRSEEEEEEEEEEEEEQPR 21 1 Q5TAQ8;V9GY54;Q5TAQ9-2;Q5TAQ9;V9GYQ9 Q5TAQ8 DCAF8 DDB1- and CUL4-associated factor 8 1 VHDRS(1)EEEEEEEEEEEEEQPR;VHDRS(1)EEEEEEEEEEEEEQPR;VHDRS(1)EEEEEEEEEEEEEQPR 152.28 7.10E-18 477837000 1539.3 1535.27 2376.13 1901.38 1330.56 1323.13 1532.84 2006.43 1217.46 1949.87 TRUE FALSE 1560.854949 1702.895971 1776.246594 1779.433997 1511.804799 1557.768528 1823.688388 1835.971248 1334.402473 1552.485424 1.005391049 1.09688371 1.144130931 1.146184028 0.973796453 1.003402998 1.17468954 1.182601279 0.859526571 1 10.60036401 -6.741066431 24.90781992 1.047137174 1.101341673 0.089112179 0.096124656 746.195655 912289.5041 0.029336955 0.037827987 1.82E-07 6.741066431 0.054204499 VHFTAEEK ddPTM_K562_Paclitaxel_30min_R1 3 VHFTAEEK 8 0 P02100 P02100 HBE1 Hemoglobin subunit epsilon 0 ;; 176.09 4.26E-07 59579000 12380.3 10288.8 21697.9 14288.9 12137.7 9258.4 9905.8 13269.8 13485.3 17270.6 FALSE TRUE 12553.6624 11412.16598 16219.99679 13372.47391 13791.06023 10900.24725 11785.37384 12142.44766 14780.62332 13750.84224 0.912937708 0.829924871 1.179563877 0.972483989 1.002924766 0.792696699 0.857065599 0.883033014 1.074888582 1 13.74723237 VHIEIGPDGR ddPTM_K562_Paclitaxel_30min_R1 3 VHIEIGPDGR 10 0 P31943;G8JLB6;E9PCY7;P55795;H0YBD7;H0YBG7;H0YB39;P52597 P31943;P52597 HNRNPH1;HNRNPH2;HNRNPF "Heterogeneous nuclear ribonucleoprotein H;Heterogeneous nuclear ribonucleoprotein H, N-terminally processed;Heterogeneous nuclear ribonucleoprotein H2;Heterogeneous nuclear ribonucleoprotein F;Heterogeneous nuclear ribonucleoprotein F, N-terminally processed" 0 ;; 151.83 0.00053149 114971000 12477.3 12559.2 15873.8 13822.5 11752.6 12266.9 11582.4 13717.6 9304.5 15181.9 FALSE TRUE 12652.0207 13930.45593 11866.26287 12935.98672 13353.50309 14442.26248 13780.09994 12552.20426 10198.2388 12087.82045 1.046675102 1.152437364 0.981671007 1.070167014 1.104707267 1.194778045 1.139998728 1.038417497 0.843678879 1 13.56126652 -8.569431959 6.04825855 0.924241591 1.098516364 0.530041691 0.065864848 0.152325066 13.11636229 0.046499152 0.017236556 2.70E-09 8.569431959 0.174274773 VHRPRS(ph)PILEEK ddPTM_K562_Paclitaxel_30min_R1 1 VHRPRSPILEEK 12 2 A0A0A0MR81;F5GXF5;E7ETD6;E9PE19;A0A2R8Y7Q1;Q12830-4;Q12830-2;Q12830 A0A0A0MR81 BPTF Nucleosome-remodeling factor subunit BPTF 1 VHRPRS(1)PILEEK 75.819 0.020108 20532000 2341.1 1851.2 3686.7 2310.2 1986.7 1557 1595.8 2320.8 1743.8 3097.1 TRUE FALSE 2373.882623 2053.320276 2755.946988 2162.034112 2257.322175 1833.112089 1898.594719 2123.633554 1911.299782 2465.90932 0.962680421 0.8326828 1.117618951 0.876769512 0.915411673 0.743381792 0.769936958 0.861196937 0.77508924 1 11.26790403 -6.898282441 2.422018586 0.819102344 0.955275374 0.242424531 0.096546576 0.371895356 4.439587551 0.031789659 0.037009045 1.26E-07 6.898282441 0.13617303 VHS(ph)PPASLVPR ddPTM_K562_Paclitaxel_30min_R1 1 VHSPPASLVPR 11 0 Q9BTE3;Q9BTE3-2;Q9BTE3-3 Q9BTE3 MCMBP Mini-chromosome maintenance complex-binding protein 1 VHS(1)PPASLVPR 91.307 0.011995 13443000 2059.9 1528 3250.9 2520.1 2279.3 1915.1 1698.4 2135.3 1544.3 2407.5 TRUE FALSE 2088.744955 1694.832207 2430.170088 2358.472066 2589.779249 2254.716096 2020.662534 1953.892937 1692.636915 1916.850178 1.089675645 0.884175626 1.267793443 1.230389361 1.351059816 1.176260994 1.054157783 1.019324806 0.883030366 1 10.90452186 -8.091650568 2.174971944 0.954914042 1.168353044 0.358463793 0.120458725 0.406128691 3.723386833 0.081208778 0.03993988 8.10E-09 8.091650568 0.213439001 VHVGDEDFVHLR ddPTM_K562_Paclitaxel_30min_R1 2 VHVGDEDFVHLR 12 0 P04080 P04080 CSTB Cystatin-B 0 ; 208.56 3.66E-10 74843000 4962.4 6288.3 7519.4 6866.5 5793.3 5699.5 6041.1 6737.4 4331.2 8130.6 FALSE TRUE 5031.88891 6974.87786 5621.034471 6426.113423 6582.445541 6710.2263 7187.367188 6165.015816 4747.231112 6473.579257 0.777296255 1.077437625 0.868303955 0.99266776 1.016817016 1.036555827 1.110261712 0.952334956 0.733324012 1 12.66034789 -2.029265911 22.35883777 0.96526045 0.004809224 0 0.119164119 0 0 0.026806357 0 0.009348331 2.029265911 -0.960451226 VHVQFFDDS(ph)PTR ddPTM_K562_Paclitaxel_30min_R1 4 VHVQFFDDSPTR 12 0 F8WAX8;P52701-2;P52701;A0A087WWJ1;C9JH55;C9J8Y8;C9J7Y7;A0A494C0M1 F8WAX8 MSH6 DNA mismatch repair protein Msh6 1 VHVQFFDDS(0.987)PT(0.013)R;VHVQFFDDS(0.951)PT(0.049)R;VHVQFFDDS(0.931)PT(0.069)R;VHVQFFDDS(0.904)PT(0.096)R 145.7 9.12E-05 136372000 11735.6 11533.1 13919.6 12545.8 10713.3 9667.9 12228.1 15492.1 8026.6 16557.3 TRUE FALSE 11899.93461 12792.32286 10405.42482 11741.16854 12172.63284 11382.36632 14548.31814 14175.94941 8797.590794 13182.91317 0.902678676 0.970371472 0.789311489 0.890635354 0.92336441 0.863418136 1.103573842 1.075327526 0.667348004 1 13.68638159 VIEDNEY(ph)TAR ddPTM_K562_Paclitaxel_30min_R1 2 VIEDNEYTAR 10 0 H0Y3C5;J3KPD6;P08631-3;P08631-2;P08631-4;P08631;P07948-2;P07948 H0Y3C5 HCK;LYN Non-specific protein-tyrosine kinase;Tyrosine-protein kinase HCK;Tyrosine-protein kinase Lyn 1 VIEDNEY(0.999)T(0.001)AR;VIEDNEY(0.978)T(0.022)AR 255.07 1.64E-66 93996000 2159.1 2257.19 3382.5 2834.8 2540.8 2318.1 1925.24 2118.6 1962.85 2174.1 TRUE FALSE 2189.334061 2503.637638 2528.546041 2652.988616 2886.899976 2729.182487 2290.54424 1938.611706 2151.390513 1731.017227 1.264767345 1.44633895 1.46072841 1.532618264 1.667747687 1.576635082 1.323235959 1.119926293 1.242847546 1 10.75740437 -8.034914276 3.355375467 1.138401974 1.497152466 0.683187113 0.112613997 0.157752019 3.61643642 0.060405799 0.034547193 9.23E-09 8.034914276 0.358750492 VIEEEWQQVDR ddPTM_K562_Paclitaxel_30min_R1 2 VIEEEWQQVDR 11 0 P42166 P42166 TMPO "Lamina-associated polypeptide 2, isoform alpha;Thymopoietin;Thymopentin" 0 ; 138.76 0.0048543 14686900 649.81 777.25 741.83 914.25 774.24 630.99 598.78 833.85 442.69 602.75 FALSE TRUE 658.9093448 862.1127835 554.5458417 855.614097 879.704596 742.887217 712.3953792 763.0092378 485.2123525 479.9092191 1.37298747 1.796408048 1.155522377 1.782866557 1.83306459 1.547974465 1.484437787 1.589903272 1.011050284 1 8.906617718 -8.762634837 24.32238726 1.005524642 1.576325634 0.5699978 0.196194976 15.61313697 317566.6836 0.155313379 0.048721069 1.73E-09 8.762634837 0.570800991 VIGQDHDFSES(ph)S(ph)EEEAPAEASSGALR ddPTM_K562_Paclitaxel_30min_R1 1 VIGQDHDFSESSEEEAPAEASSGALR 26 0 P23497-2;P23497-3;P23497;P23497-4;E9PHV6;P23497-7;P23497-6;P23497-5;H7C1G8;H7C4B4 P23497-2 SP100 Nuclear autoantigen Sp-100 2 VIGQDHDFS(0.077)ES(0.984)S(0.933)EEEAPAEAS(0.003)S(0.004)GALR 71.678 0.0013632 6916300 1492.3 1553.4 2202.9 1959.1 1622.9 1958.9 1395.8 1800.7 1059.4 1999.8 TRUE FALSE 1513.196804 1723.005465 1646.75065 1833.452095 1843.966456 2306.283411 1660.645763 1647.719295 1161.160104 1592.239662 0.950357437 1.08212696 1.034235416 1.151492541 1.158096045 1.448452432 1.042962189 1.03484377 0.72926214 1 10.63684179 -8.475224005 3.011545826 0.86699402 1.133329989 0.341923957 0.139537489 0.295800808 5.195181748 0.105218084 0.039094663 3.35E-09 8.475224005 0.266335969 VIHLVER ddPTM_K562_Paclitaxel_30min_R1 1 VIHLVER 7 0 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;A0A0G2JJM1;X6REW1;F6S6P2;F6UR09;F6TC96;F6U341;F6X9W3;F6WML8;A0A1B0GX79;A0A0G2JJR8;F6XTU0;F6U1F2;F6VEM6;P46379-4 P46379-3;P46379-4 BAG6;BAT3 Large proline-rich protein BAG6 0 115.46 0.0069205 5045200 2769.5 2611.5 2919.6 2775.1 2827.9 2142.2 2565.1 2836.2 2668.3 3277 FALSE TRUE 2808.281545 2896.632402 2182.510871 2597.117507 3213.107857 2522.089092 3051.814334 2595.247107 2924.602137 2609.145601 1.076322281 1.110184269 0.83648489 0.995390026 1.231478939 0.966634093 1.169660418 0.994673163 1.120904152 1 11.34936174 VILHLKEDQTEYLEER ddPTM_K562_Paclitaxel_30min_R1 2 VILHLKEDQTEYLEER 16 1 P08238;Q58FF7;G3V2J8;Q58FF6;P07900;P07900-2 P08238;P07900 HSP90AB1;HSP90AB3P;HSP90AA1;HSP90AB4P Heat shock protein HSP 90-beta;Putative heat shock protein HSP 90-beta-3;Putative heat shock protein HSP 90-beta 4;Heat shock protein HSP 90-alpha 0 ; 120.29 0.00028286 7808900 4115.8 3454.2 6843.7 5042.8 3937.9 3022.4 2955.1 4833.7 4643.4 5534.7 FALSE TRUE 4173.433898 3831.341237 5115.923293 4719.377379 4474.308649 3558.380203 3515.814798 4423.047014 5089.419317 4406.725102 0.947060187 0.869430506 1.160935428 1.070948895 1.015336456 0.807488582 0.79782939 1.003703864 1.15492099 1 12.10549119 -8.530379587 24.19776073 1.078077909 0.954741483 0.164422831 0.111952964 253.6346717 818191.7771 0.082663396 0.031398287 2.95E-09 8.530379587 -0.123336426 VINAAHSFYNGTTTLPISDEDRT(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 VINAAHSFYNGTTTLPISDEDRTPR 25 1 P49915-2;P49915 P49915-2 GMPS GMP synthase [glutamine-hydrolyzing] 1 VINAAHSFY(0.001)NGTTTLPIS(0.05)DEDRT(0.949)PR;VINAAHS(0.001)FY(0.003)NGT(0.009)T(0.009)T(0.009)LPIS(0.273)DEDRT(0.697)PR 89.968 0.00016655 425320000 5188.6 5100.5 4686.5 4529.5 4137.3 4799.7 6025.1 7717.3 4740.7 8688.5 TRUE FALSE 5261.256408 5657.389839 3503.335113 4238.998143 4700.870305 5650.859404 7168.331272 7061.667195 5196.065417 6917.778931 0.760541275 0.81780437 0.506424844 0.612768663 0.679534624 0.816860362 1.036218611 1.020799778 0.751117587 1 12.7560932 -7.468478105 3.286746976 0.953014595 0.671180496 0.592823478 0.107696533 0.184881706 3.978360259 0.04387329 0.036314695 3.40E-08 7.468478105 -0.281834099 VINVETNRG ddPTM_K562_Paclitaxel_30min_R1 2 VINVETNRG 9 1 H0Y8N5 H0Y8N5 PPWD1 0 ; 109.01 0.0067404 13602700 3240.7 2837.23 3675 3215.2 2326.42 2754.11 2846.56 3160.8 3093.6 3645.8 FALSE TRUE 3286.079798 3147.008366 2747.200798 3008.991463 2643.317791 3242.512739 3386.6799 2892.270311 3390.754103 2902.783959 1.132044219 1.084134545 0.946402088 1.036588153 0.910614716 1.117035503 1.166700639 0.996378081 1.168104189 1 11.50322149 VIQPMGMS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 VIQPMGMSPR 10 0 H0YE35;Q9NPQ8-2;Q9NPQ8-4;Q9NPQ8;Q9NPQ8-3 H0YE35 RIC8A Synembryn-A 1 VIQPMGMS(1)PR;VIQPMGMS(1)PR 117.27 0.0035315 319260000 4497.2 3995.4 4554.4 3982.9 3425 3376.7 3474.3 3845.3 3474.1 3316.1 TRUE FALSE 4560.174675 4431.631284 3404.585392 3727.454621 3891.542986 3975.510334 4133.530288 3518.617763 3807.802828 2640.277 1.727157672 1.678472101 1.289480381 1.411766501 1.473914664 1.50571714 1.565566904 1.33266993 1.442198235 1 11.36647358 -13.36295474 0.167055597 3.89E-15 1.626390167 0.632551838 0.119567118 51.54129178 0.796919159 18.61646429 0.531363012 4.34E-14 13.36295474 1.626390167 VISFIENTS(ph)TPVDR ddPTM_K562_Paclitaxel_30min_R1 1 VISFIENTSTPVDR 14 0 E9PGE5;Q9NUY8-2;Q9NUY8 E9PGE5 TBC1D23 TBC1 domain family member 23 1 VISFIENT(0.15)S(0.425)T(0.425)PVDR 186.29 1.75E-06 9775400 1439.8 1122.6 1245.1 1615.3 1090.9 1127.6 1140.1 1312.6 1472.2 1676.3 TRUE FALSE 1459.961642 1245.169264 930.7591058 1511.701888 1239.499049 1327.564028 1356.428023 1201.086437 1613.611388 1334.66914 1.093875327 0.932942276 0.697370665 1.132641673 0.92869387 0.994676499 1.016302829 0.899913245 1.208997301 1 10.38226643 -8.750354455 24.99960647 1.104498692 0.959729231 0.17945777 0.121756505 312.2250455 704165.4525 0.082062318 0.03036085 1.78E-09 8.750354455 -0.14476946 VISFIENTST(ph)PVDR ddPTM_K562_Paclitaxel_30min_R1 1 VISFIENTSTPVDR 14 0 E9PGE5;Q9NUY8-2;Q9NUY8 E9PGE5 TBC1D23 TBC1 domain family member 23 1 VISFIENT(0.003)S(0.028)T(0.969)PVDR 157.09 0.00029272 9943900 1425.6 1169.1 1445.1 1188.8 1084.9 1136.8 1259.3 1542.1 1510 1906 TRUE FALSE 1445.562798 1296.746292 1080.266632 1112.555689 1232.681748 1338.395519 1498.245601 1411.08898 1655.042247 1517.556154 0.952559676 0.854496414 0.711846234 0.733123243 0.812280814 0.881941347 0.98727523 0.929843008 1.090597038 1 10.56753419 -7.639947198 1.887620362 1.005599059 0.804463616 0.609049322 0.071489567 0.252049829 1.832983588 0.037278949 0.025884769 2.29E-08 7.639947198 -0.201135443 VISRPPPSVS(ph)PPKCIQMER ddPTM_K562_Paclitaxel_30min_R1 1 VISRPPPSVSPPKCIQMER 19 2 Q8NHM5-4;Q8NHM5-2;Q8NHM5-3;Q8NHM5;A0A0C4DGG3 Q8NHM5-4 KDM2B Lysine-specific demethylase 2B 1 VISRPPPS(0.008)VS(0.992)PPKCIQMER 55.546 0.024596 14052000 1579.3 1359.8 2314 1811.7 1338.4 1115 1412.1 2059.9 1785.2 2153.6 TRUE FALSE 1601.415073 1508.267563 1729.802081 1695.505671 1520.712739 1312.729595 1680.038603 1884.898638 1956.676436 1714.695138 0.93393574 0.879612667 1.008810279 0.988808817 0.88687062 0.765576087 0.979788515 1.099261668 1.141122053 1 10.74373638 -8.105840309 4.369219815 1.087956605 0.913284135 0.530041847 0.070909304 0.187621389 5.94212779 0.037182215 0.020936286 7.84E-09 8.105840309 -0.174672469 VIY(ph)DFIEK ddPTM_K562_Paclitaxel_30min_R1 2 VIYDFIEK 8 0 O00401 O00401 WASL Neural Wiskott-Aldrich syndrome protein 1 VIY(1)DFIEK;VIY(1)DFIEK 107.47 0.019535 12456000 3651.2 3054.25 5310 3307.23 2284.65 2280.12 2648.84 3725.3 3749.45 4209.13 TRUE FALSE 3702.328065 3387.723344 3969.424827 3095.11907 2595.858009 2684.467268 3151.443562 3408.812512 4109.601425 3351.306996 1.104741544 1.010866312 1.184440826 0.923555817 0.774580787 0.801020996 0.940362541 1.017159131 1.226268268 1 11.71050813 -6.281118641 24.59379554 0.940915243 1.09110124 0.217801839 0.12393776 1029.506594 1286604.732 0.03826531 0.056855657 5.23E-07 6.281118641 0.150185998 VKADRDESSPYAAMLAAQDVAQR ddPTM_K562_Paclitaxel_30min_R1 2 VKADRDESSPYAAMLAAQDVAQR 23 2 P62263;A0A2R8Y811;E5RH77 P62263 RPS14 40S ribosomal protein S14 0 ; 87.496 0.00023726 37097000 6639 6248.1 10183.6 6928 5802.2 4728 5617.8 8199.1 7819.5 10372.6 FALSE TRUE 6731.966483 6930.288688 7612.624231 6483.669089 6592.557872 5566.444416 6683.748223 7502.535278 8570.597913 8258.658426 0.815140442 0.839154295 0.921774922 0.785075342 0.798260145 0.674013154 0.809301932 0.908444797 1.037771206 1 13.01169173 -8.515045797 2.919167566 1.017498469 0.806102406 0.683046188 0.058068787 0.171010116 2.847042007 0.049464445 0.017382535 3.05E-09 8.515045797 -0.211396064 VKAPVHFVEPLS(ph)PTGVAGHR ddPTM_K562_Paclitaxel_30min_R1 1 VKAPVHFVEPLSPTGVAGHR 20 1 Q5T5Y3-2;Q5T5Y3;Q5T5Y3-3 Q5T5Y3-2 CAMSAP1 Calmodulin-regulated spectrin-associated protein 1 1 VKAPVHFVEPLS(0.656)PT(0.344)GVAGHR 89.622 0.00072553 10584000 2669.3 2043.9 3775.5 2354.4 1817.3 2100.7 1642.1 2443.1 2538 3278.5 TRUE FALSE 2706.678435 2267.059914 2822.32833 2203.399322 2064.847027 2473.22965 1953.679903 2235.543406 2781.78624 2610.3399 1.03690651 0.868492227 1.081211045 0.844104372 0.791026114 0.947474177 0.748438892 0.856418509 1.065679699 1 11.35002196 -6.286196016 24.8912822 0.879282622 0.982832188 0.158913824 0.103107848 1223.777817 1230430.628 0.028460129 0.042233833 5.17E-07 6.286196016 0.103549566 VKESSIIAPAPAEDVDT(ph)PPR ddPTM_K562_Paclitaxel_30min_R1 2 VKESSIIAPAPAEDVDTPPR 20 1 Q15910-5;Q15910-3;Q15910-4;Q15910;Q15910-2 Q15910-5 EZH2 Histone-lysine N-methyltransferase EZH2 1 VKESSIIAPAPAEDVDT(1)PPR;VKESSIIAPAPAEDVDT(1)PPR 139.22 8.75E-13 140459000 9196.8 8373.4 15004.5 9516.1 7386.5 7332.3 6756.7 10964.3 7348.8 12169.1 TRUE FALSE 9325.583575 9287.636129 11216.4284 8905.779938 8392.666354 8632.580454 8038.748553 10032.81428 8054.685075 9689.03074 0.9624888 0.958572264 1.157641946 0.919161078 0.866202882 0.890964296 0.829675204 1.035481726 0.831320004 1 13.24213663 -6.488677962 24.94744256 0.904655319 1.022623723 0.302533715 0.080511487 716.9663771 522984.3299 0.022011731 0.032627566 3.25E-07 6.488677962 0.117968404 VKPAS(ph)PVAQPK ddPTM_K562_Paclitaxel_30min_R1 1 VKPASPVAQPK 11 1 H0Y3K4;Q96EV2 H0Y3K4 RBM33 RNA-binding protein 33 1 VKPAS(1)PVAQPK 97.767 0.0077073 33348000 6095.4 4340.9 12349 6077.4 4214.9 2905.6 3576 6044.1 4000.8 8056 TRUE FALSE 6180.754406 4814.854142 9231.34222 5687.622765 4789.040739 3420.867363 4254.527332 5530.615979 4385.094716 6414.182778 0.963607465 0.750657458 1.439207852 0.88672602 0.746633033 0.533328638 0.663299984 0.862247954 0.683656027 1 12.64704975 -6.560932145 5.236310666 0.730718741 1.042780744 0.319594722 0.196475377 0.213640127 14.4424325 0.05857431 0.077720463 2.75E-07 6.560932145 0.312062003 VKPPGGHS(ph)PQVNHLK ddPTM_K562_Paclitaxel_30min_R1 1 VKPPGGHSPQVNHLK 15 1 Q92610 Q92610 ZNF592 Zinc finger protein 592 1 VKPPGGHS(1)PQVNHLK 75.669 0.020901 10092000 1956.2 1568.4 4447.9 2474.9 1830.4 1388.7 1441.5 2366.8 1552.3 3190.3 TRUE FALSE 1983.592835 1739.643216 3324.972634 2316.170991 2079.731469 1634.966447 1715.0171 2165.725567 1701.405351 2540.115109 0.780906672 0.684867867 1.308985023 0.91183702 0.818754812 0.643658408 0.675172985 0.852609222 0.669814271 1 11.31067816 -6.872121377 3.886626756 0.751706517 0.932317645 0.134704806 0.179719336 0.420595889 11.87192409 0.058844993 0.068106082 1.34E-07 6.872121377 0.180611128 VKS(ph)GTPPRQGS(ph)ITSPQANEQS(ph)VTPQRR ddPTM_K562_Paclitaxel_30min_R1 1 VKSGTPPRQGSITSPQANEQSVTPQRR 27 3 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 3 VKS(0.537)GT(0.443)PPRQGS(0.536)IT(0.144)S(0.34)PQANEQS(0.852)VT(0.149)PQRR 59.539 0.0037355 23478000 2736.1 1902.6 4340.9 2813 1924.3 1727.1 1800.8 2675.6 2805.6 3100.5 TRUE FALSE 2774.413842 2110.332302 3244.986107 2632.586771 2186.422239 2033.376935 2142.492399 2448.291079 3075.090416 2468.616398 1.123874023 0.854864411 1.314495889 1.066421973 0.885687319 0.823690929 0.86789199 0.991766514 1.245673657 1 11.26948696 -4.930316376 18.92542033 1.002357899 3.655985723 0.048286361 0.156915247 640.055963 189588.1647 0.039774093 6400.64428 1.17E-05 4.930316376 2.653627823 VKT(ph)FQENLS(ph)AFKR ddPTM_K562_Paclitaxel_30min_R1 1 VKTFQENLSAFKR 13 2 A0A0D9SFM0;Q149N8-4;Q149N8 A0A0D9SFM0 SHPRH E3 ubiquitin-protein ligase SHPRH 2 VKT(1)FQENLS(1)AFKR 73.296 0.016784 6420200 2944.8 3012.7 2679 3446.6 3973.1 4195.7 2173.6 1857.8 3571.1 1662.2 TRUE FALSE 2986.036285 3341.636774 2002.653317 3225.550502 4514.303485 4939.748484 2586.029253 1699.968294 3914.120111 1323.442728 2.256264078 2.524957601 1.513214947 2.437242228 3.411030482 3.732498869 1.954016747 1.284504617 2.957528898 1 10.37008005 -9.910268657 0.637887995 0.943235156 2.511886636 0.252607175 0.73609088 5.895322904 2.942615602 1.803201923 0.317854038 1.23E-10 9.910268657 1.56865148 VKVDGPRS(ph)PS(ph)YGR ddPTM_K562_Paclitaxel_30min_R1 1 VKVDGPRSPSYGR 13 2 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 2 VKVDGPRS(0.999)PS(1)Y(0.001)GR 110.25 0.013731 29001000 6995.4 6554.4 12918 7855.5 6385.8 5508.4 5730.3 8472.1 5050.3 10458 TRUE FALSE 7093.357183 7270.031558 9656.691132 7351.68339 7255.654072 6485.237398 6817.594511 7752.342224 5535.40388 8326.653859 0.85188568 0.873103612 1.159732504 0.882909691 0.871376929 0.778852767 0.818767614 0.93102732 0.664781312 1 13.02352114 -6.511511638 24.28333426 0.839879612 0.964159258 0.175582109 0.113539999 607.9815333 1298820.092 0.032114046 0.044621246 3.08E-07 6.511511638 0.124279646 VKVDGPRS(ph)PSYGR ddPTM_K562_Paclitaxel_30min_R1 1 VKVDGPRSPSYGR 13 2 J3KTL2;Q07955;J3KSR8 J3KTL2 SRSF1 Serine/arginine-rich splicing factor 1 1 VKVDGPRS(0.631)PS(0.364)Y(0.005)GR 72.523 0.023057 780690000 3155.5 3257.8 5100.9 3966.5 2495.4 2446 2331.4 3181.6 2436.1 3915.6 TRUE FALSE 3199.686736 3613.497621 3813.114708 3712.106443 2835.315727 2879.763756 2773.770979 2911.303221 2670.09829 3117.598571 1.026330576 1.159064433 1.223093551 1.19069417 0.909455038 0.923712175 0.889713963 0.933828764 0.856459942 1 11.60621946 -6.765797902 24.9983765 0.914338193 1.155693315 0.788313834 0.058565981 47.08970317 270083.4816 0.018142771 0.021290789 1.71E-07 6.765797902 0.241355122 VLAGETLS(ph)VNDPPDVLDR ddPTM_K562_Paclitaxel_30min_R1 1 VLAGETLSVNDPPDVLDR 18 0 Q12906;Q12906-7;Q12906-5;Q12906-4;Q12906-2;Q12906-6;Q12906-3;K7EKJ9;K7EQR9 Q12906 ILF3 Interleukin enhancer-binding factor 3 1 VLAGET(0.044)LS(0.956)VNDPPDVLDR 88.385 0.0033535 14473000 1148.1 1102.6 1265 908.93 936.77 656.39 698.44 1007.3 873.44 1284 TRUE FALSE 1164.176942 1222.985597 945.6351047 850.635298 1064.373934 772.7915503 830.9653439 921.7235776 957.3378146 1022.320095 1.138759717 1.196284415 0.924989256 0.83206356 1.041135686 0.755919358 0.812823056 0.901599785 0.936436464 1 9.997631269 -5.807282086 5.535891435 0.889526882 1.168365994 0.629492601 0.081773069 0.102118627 7.149242635 0.021363662 0.047608127 1.56E-06 5.807282086 0.278839113 VLAPILPDNFST(ph)PTGSR ddPTM_K562_Paclitaxel_30min_R1 1 VLAPILPDNFSTPTGSR 17 0 Q9NQS7;Q9NQS7-2 Q9NQS7 INCENP Inner centromere protein 1 VLAPILPDNFS(0.008)T(0.981)PT(0.01)GSR 229.02 2.24E-39 71782000 4017.2 3797.6 4234.4 3733.9 3135.1 3158.5 3631.8 3878.2 3419.9 4605.8 TRUE FALSE 4073.453194 4212.234811 3165.37335 3494.424366 3562.153698 3718.615627 4320.915091 3548.722703 3748.396676 3667.135432 1.11079977 1.148644463 0.863173288 0.952903003 0.971372278 1.014038259 1.178280751 0.967709748 1.022159324 1 11.84043783 -7.544741613 24.99037436 1.047462689 1.004540415 0.026338005 0.090650485 938.4577798 1072696.166 0.036979825 0.028646685 2.85E-08 7.544741613 -0.042922274 VLDNYLTSPLPEEVDET(ph)SAEDEGVSQRK ddPTM_K562_Paclitaxel_30min_R1 1 VLDNYLTSPLPEEVDETSAEDEGVSQRK 28 1 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 1 VLDNYLT(0.004)S(0.012)PLPEEVDET(0.492)S(0.492)AEDEGVS(0.001)QRK 53.097 0.012961 16185000 704.33 904.99 1681.5 1120.9 955.46 934.1 915.2 1098.5 1114.9 1726.8 TRUE FALSE 714.192793 1003.799869 1256.984528 1049.010491 1085.609828 1099.74952 1088.854422 1005.175568 1221.991127 1374.877212 0.519459328 0.730101466 0.914252209 0.762984855 0.789604932 0.799889263 0.791964848 0.731102065 0.888800189 1 10.42508706 -10.32488467 0.037994449 1.810636041 5.34E-20 0.485609995 0.087928142 272.5749514 2.6655214 74.04017323 53.23762946 4.73E-11 10.32488467 -1.810636041 VLDNYLTSPLPEEVDETS(ph)AEDEGVSQR ddPTM_K562_Paclitaxel_30min_R1 2 VLDNYLTSPLPEEVDETSAEDEGVSQR 27 0 O00299 O00299 CLIC1 Chloride intracellular channel protein 1 1 VLDNYLTSPLPEEVDET(0.236)S(0.764)AEDEGVSQR;VLDNYLTSPLPEEVDET(0.233)S(0.766)AEDEGVS(0.001)QR 142.53 2.88E-24 25945000 4388.7 3840.4 4884.2 4365.4 3579.5 3662.3 4367.3 4482.5 4552.5 5509.1 TRUE FALSE 4450.15534 4259.707859 3651.123303 4085.422783 4067.088501 4311.757484 5195.972376 4101.683646 4989.787966 4386.342396 1.014548099 0.97112981 0.832384473 0.931396233 0.927216376 0.982996103 1.184579749 0.93510339 1.13757375 1 12.09880272 -7.531195796 24.99245961 1.062460725 0.933757388 0.385884395 0.076762569 199.0564298 598151.2248 0.028372582 0.022014587 2.94E-08 7.531195796 -0.128703337 VLDTSSLTQSAPAS(ph)PTNK ddPTM_K562_Paclitaxel_30min_R1 2 VLDTSSLTQSAPASPTNK 18 0 Q8N122;Q8N122-3;I3L436 Q8N122 RPTOR Regulatory-associated protein of mTOR 1 VLDTSSLTQSAPAS(0.999)PT(0.001)NK;VLDTSSLTQS(0.003)APAS(0.997)PT(0.001)NK 300.5 1.15E-179 40032000 3372.1 2892.4 6470.4 4063.4 2564.1 2322.7 2375.4 3437.5 2132.7 4170.2 TRUE FALSE 3419.319804 3208.202013 4836.867495 3802.791711 2913.373831 2734.598233 2826.11975 3145.462919 2337.555364 3320.310951 1.029819151 0.96623541 1.456751361 1.14531192 0.877440057 0.823597028 0.851161169 0.947339862 0.704017003 1 11.69710264 -6.763427826 5.972887991 0.860430426 1.159902895 0.494068216 0.139837319 0.133018484 17.41818781 0.043764839 0.053030797 1.72E-07 6.763427826 0.299472469 VLGLLERS(ph)SMS(ph)LTQDMLNGELK ddPTM_K562_Paclitaxel_30min_R1 1 VLGLLERSSMSLTQDMLNGELK 22 1 H3BTB7;Q5JPH6;Q5JPH6-2 H3BTB7 EARS2 "Probable glutamate--tRNA ligase, mitochondrial" 2 VLGLLERS(0.549)S(0.549)MS(0.902)LT(0.001)QDMLNGELK 47.082 0.027439 13434000 2576.9 2110.3 2188.2 2002.9 2056.5 1963.6 2509.4 2911.6 2141.5 2556.6 TRUE FALSE 2612.98455 2340.709691 1635.761847 1874.442959 2336.630117 2311.81689 2985.54555 2664.241406 2347.200643 2035.563517 1.283666429 1.149907469 0.803591651 0.920847197 1.147903319 1.135713463 1.466692405 1.3088471 1.153096243 1 10.99121252 -7.252223405 2.531939987 1.256456061 1.035183635 0.172088308 0.167019416 0.429555058 5.44851923 0.066223616 0.061671052 5.59E-08 7.252223405 -0.221272425 VLGRS(ph)PLTILQDDNS(ph)PGTLTLR ddPTM_K562_Paclitaxel_30min_R1 2 VLGRSPLTILQDDNSPGTLTLR 22 1 J3KMY0;Q99618 J3KMY0 CDCA3 Cell division cycle-associated protein 3 2 VLGRS(0.999)PLT(0.001)ILQDDNS(0.901)PGT(0.091)LT(0.009)LR;VLGRS(1)PLTILQDDNS(0.874)PGT(0.118)LT(0.009)LR 103.85 0.00018684 21303500 2204.4 2198.8 3380.6 2490.7 1623.21 2431 2051.18 2717.4 2135.7 2762.9 TRUE FALSE 2235.268401 2438.87242 2527.125719 2330.95765 1844.318683 2862.103717 2440.380697 2486.539909 2340.843528 2199.819463 1.016114476 1.108669352 1.148787781 1.059613159 0.838395475 1.301063003 1.109354989 1.130338171 1.064107108 1 11.10316941 -7.277318318 24.999294 1.128392657 1.046211699 0.139769629 0.104639588 1830.886255 2882477.422 0.037241066 0.032941664 5.28E-08 7.277318318 -0.082180957 VLGS(ph)EGEEEDEALS(ph)PAK ddPTM_K562_Paclitaxel_30min_R1 1 VLGSEGEEEDEALSPAK 17 0 M0R0Q7;P18858-2;P18858-3;P18858;B4E135;F5GZ28;M0QY71;M0R1G7 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 2 VLGS(1)EGEEEDEALS(1)PAK 90.475 0.00779 0 1174.4 1140 2301.3 1343.3 870.34 915.28 768.71 1354.5 816.94 1771.2 TRUE FALSE 1190.845223 1264.469055 1720.308353 1257.14675 988.895043 1077.592057 914.5687096 1239.42677 895.4107372 1410.228468 0.844434253 0.896641278 1.219879184 0.891448995 0.701230379 0.764125871 0.648525207 0.878883669 0.634940194 1 10.46171319 -6.544248666 7.355346847 0.761424983 0.990735277 0.336955614 0.136346587 0.173317598 40.45750727 0.039064871 0.051406373 2.86E-07 6.544248666 0.229310294 VLGS(ph)EGEEEDEALSPAK ddPTM_K562_Paclitaxel_30min_R1 3 VLGSEGEEEDEALSPAK 17 0 M0R0Q7;P18858-2;P18858-3;P18858;B4E135;F5GZ28;M0QY71;M0R1G7 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 1 VLGS(1)EGEEEDEALSPAK;VLGS(1)EGEEEDEALSPAK;VLGS(1)EGEEEDEALSPAK 144.15 1.55E-08 91332600 3809.72 4044.54 6962.1 4596.89 3464.74 3161.2 2787.05 4812.82 3570.78 5745.92 TRUE FALSE 3863.067834 4486.136555 5204.431749 4302.06605 3936.696247 3721.794435 3315.878188 4403.9409 3913.769374 4574.89835 0.844405173 0.980598084 1.137605986 0.9403632 0.860499173 0.813525056 0.724798222 0.962631421 0.855487723 1 12.15952397 -6.632091389 4.276047646 0.857880554 0.993995267 0.224790975 0.097199155 0.289872387 9.429370712 0.029943116 0.039198783 2.33E-07 6.632091389 0.136114713 VLGSEGEEEDEALS(ph)PAK ddPTM_K562_Paclitaxel_30min_R1 2 VLGSEGEEEDEALSPAK 17 0 M0R0Q7;P18858-2;P18858-3;P18858;B4E135;F5GZ28;M0QY71;M0R1G7 M0R0Q7 LIG1 DNA ligase;DNA ligase 1 1 VLGSEGEEEDEALS(1)PAK;VLGSEGEEEDEALS(1)PAK 122.46 5.69E-05 70641000 2382.19 2255.35 4860 2610.2 1949.34 2063.56 1862.57 2996.9 1654.2 3831.2 TRUE FALSE 2415.54801 2501.59674 3633.032892 2442.793455 2214.873111 2429.503392 2215.982934 2742.294639 1813.093301 3050.399337 0.791879273 0.820088278 1.191002387 0.800811037 0.726092838 0.796454209 0.726456667 0.898995291 0.594378998 1 11.57478241 -6.489876631 24.99865321 0.780724657 0.935067634 0.172455717 0.142196044 1023.643273 775395.8473 0.038722007 0.057385038 3.24E-07 6.489876631 0.154342977 VLGTS(ph)PEAIDSAENR ddPTM_K562_Paclitaxel_30min_R1 1 VLGTSPEAIDSAENR 15 0 P27708;F8VPD4 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 VLGT(0.236)S(0.763)PEAIDS(0.001)AENR 95.822 0.0079416 7279600 1290.7 1264.3 1554.5 1601 1156.3 1081.2 999.57 1394.6 961.44 1719.2 TRUE FALSE 1308.773782 1402.34055 1162.047249 1498.319026 1313.807636 1272.935639 1189.233189 1276.120025 1053.790608 1368.826096 0.956128602 1.024484084 0.848937095 1.094601447 0.959806099 0.92994694 0.868797865 0.932273302 0.769849881 1 10.41872345 -7.433475157 2.775242988 0.887503708 0.979044832 0.200543878 0.078836401 0.422069365 6.345013512 0.029791023 0.024868983 3.69E-08 7.433475157 0.091541124 VLHVS(ph)ENPVPLTVR ddPTM_K562_Paclitaxel_30min_R1 2 VLHVSENPVPLTVR 14 0 Q8N1G4 Q8N1G4 LRRC47 Leucine-rich repeat-containing protein 47 1 VLHVS(1)ENPVPLTVR;VLHVS(1)ENPVPLTVR 102.5 0.0027008 5955100 3155.6 3223.9 3205.5 2878.4 2292.65 2875.5 3304.2 4060.7 3257.9 3788 TRUE FALSE 3199.788136 3575.896305 2396.23188 2693.792307 2604.947745 3385.429551 3931.154701 3715.718189 3570.835852 3016.003521 1.060936472 1.185640627 0.794505664 0.893166168 0.863708456 1.122488594 1.303431735 1.232000614 1.18396276 1 11.5584224 -7.459205401 5.612650044 1.201379262 0.960662523 0.414664512 0.124355107 0.210877929 13.24106286 0.047134476 0.040815927 3.47E-08 7.459205401 -0.240716739 VLIEDT(ph)DDEANT ddPTM_K562_Paclitaxel_30min_R1 2 VLIEDTDDEANT 12 0 Q9UBH6-2;Q9UBH6 Q9UBH6-2 XPR1 Xenotropic and polytropic retrovirus receptor 1 1 VLIEDT(1)DDEANT;VLIEDT(1)DDEANT 164.43 0.0025504 50005000 6247.4 6034.4 7062.2 6609.8 5725.3 5065.3 5993.7 6941.4 8101.1 7562.3 TRUE FALSE 6334.882875 6693.256199 5279.260266 6185.877012 6505.18279 5963.559835 7130.973286 6351.684743 8879.246852 6021.099109 1.052114034 1.11163362 0.876793451 1.027366748 1.080397893 0.990443726 1.184330827 1.054904533 1.474688706 1 12.55581115 -7.982784611 1.683728759 1.208201318 1.021914478 0.231242006 0.132182479 0.521916463 2.904478176 0.079962585 0.04013919 1.04E-08 7.982784611 -0.18628684 VLLGFSSDES(ph)DVEASPR ddPTM_K562_Paclitaxel_30min_R1 3 VLLGFSSDESDVEASPR 17 0 Q9Y2U8 Q9Y2U8 LEMD3 Inner nuclear membrane protein Man1 1 VLLGFSSDES(1)DVEASPR;VLLGFS(0.01)S(0.22)DES(0.77)DVEASPR;VLLGFSS(0.003)DES(0.997)DVEASPR 273.52 7.64E-113 65464000 3730.6 3383.05 3381 2850.15 2430.46 2463.59 3461.17 4062.6 4622 4580.4 TRUE FALSE 3782.83991 3752.42284 2527.424734 2667.354136 2761.5298 2900.473096 4117.908939 3717.456772 5065.963752 3646.911966 1.037272066 1.028931566 0.693031463 0.731400747 0.757224146 0.795323036 1.129149532 1.01934371 1.389110513 1 11.83245966 -7.766813674 24.33233312 1.136013034 0.833642576 0.49240579 0.146065922 85.75152523 388236.526 0.062850647 0.043802982 1.71E-08 7.766813674 -0.302370458 VLLS(ph)DSNLHDA ddPTM_K562_Paclitaxel_30min_R1 2 VLLSDSNLHDA 11 0 Q6FI81-2;Q6FI81-3;Q6FI81;H3BV90 Q6FI81-2 CIAPIN1 Anamorsin 1 VLLS(0.976)DS(0.024)NLHDA;VLLS(0.975)DS(0.025)NLHDA 127.52 0.0014064 71413000 9337.2 9311.5 11587.8 10910.8 9911.1 8691.7 7612.9 9046.5 9821.1 9757.7 TRUE FALSE 9467.949608 10328.16106 8662.316574 10211.03012 11261.15962 10233.05096 9057.408033 8277.943359 10764.46054 7769.075384 1.218671353 1.329393853 1.114973938 1.314317292 1.449485178 1.317151714 1.165828311 1.065499168 1.385552335 1 12.92352719 -11.34422671 0.354709375 0.839159006 1.278514916 0.30869504 0.115813668 26.66044259 2.097020722 4.100895809 0.096526605 4.53E-12 11.34422671 0.43935591 VLNT(ph)GSDVEEAVADALKKPAR ddPTM_K562_Paclitaxel_30min_R1 1 VLNTGSDVEEAVADALKKPAR 21 2 E3W994;J3KR49;O75122 E3W994 CLASP2 CLIP-associating protein 2 1 VLNT(0.505)GS(0.495)DVEEAVADALKKPAR 101.85 0.0038432 22293000 5073.7 3768.9 10857 5380.9 4294.7 3172.9 3393.4 5720.4 6527.6 6983.1 TRUE FALSE 5144.747454 4180.401248 8116.016072 5035.793158 4879.71085 3735.569265 4037.279935 5234.416314 7154.605146 5559.940387 0.925324211 0.751878789 1.459730772 0.905727905 0.877655246 0.671872179 0.72613727 0.941451877 1.286813284 1 12.4408537 VLNTGS(ph)DVEEAVADALKKPAR ddPTM_K562_Paclitaxel_30min_R1 1 VLNTGSDVEEAVADALKKPAR 21 2 E3W994;J3KR49;O75122 E3W994 CLASP2 CLIP-associating protein 2 1 VLNT(0.372)GS(0.628)DVEEAVADALKKPAR 89.604 0.0035863 13247000 1635.6 1070.3 4076.4 2134.6 982.03 877.33 1184.5 1881.4 1988.3 2099.8 TRUE FALSE 1658.503446 1187.158974 3047.262404 1997.69631 1115.799112 1032.912157 1409.252691 1721.563327 2179.285099 1671.859607 0.992011195 0.710082933 1.822678406 1.194894775 0.667400006 0.617822306 0.842925258 1.029729601 1.30350963 1 10.70723799 -6.726085309 23.86204496 0.89373191 1.192269385 0.147275497 0.315859022 216.8050959 146329.7295 0.099494333 0.128439292 1.88E-07 6.726085309 0.298537474 VLNTNIDGRR ddPTM_K562_Paclitaxel_30min_R1 2 VLNTNIDGRR 10 1 P62269;A0A0G2JQH2;Q5GGW2 P62269 RPS18 40S ribosomal protein S18 0 ; 102.95 0.012199 23540000 2113.45 1678.47 2226.17 2135.64 2024.76 1807.65 1903.5 1963.29 2188.66 2575.4 FALSE TRUE 2143.044821 1861.731031 1664.145851 1998.669609 2300.566591 2128.211347 2264.679188 1796.49626 2398.890572 2050.532066 1.045116463 0.907925831 0.811567826 0.974707805 1.121936413 1.0378825 1.104434905 0.876112249 1.169886885 1 11.00178259 -6.526593492 24.53460235 1.047537871 0.915669317 0.294470716 0.091178485 103.1278697 681116.2794 0.026139324 0.033916839 2.97E-07 6.526593492 -0.131868555 VLPPPAGYVPIRT(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 1 VLPPPAGYVPIRTPAR 16 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 VLPPPAGYVPIRT(1)PAR 148.33 4.14E-07 25771000 1796.1 1457.6 1721.7 1658.3 1413.9 1388.8 1807.7 2076.1 1808.4 2297.5 TRUE FALSE 1821.250941 1616.745697 1287.035541 1551.94406 1606.497118 1635.08418 2150.701638 1899.722346 1982.1049 1829.268239 0.995617211 0.883821007 0.70357945 0.848396111 0.87821845 0.893846045 1.17571693 1.038514913 1.083550711 1 10.83705093 -7.641231758 6.182277701 1.076699169 0.856875759 0.62733682 0.078398924 0.140580992 7.06110162 0.031471427 0.024193308 2.28E-08 7.641231758 -0.21982341 VLPQGPPT(ph)PAK ddPTM_K562_Paclitaxel_30min_R1 1 VLPQGPPTPAK 11 0 Q8IWY9;H3BPZ6;Q8IWY9-1 Q8IWY9 CDAN1 Codanin-1 1 VLPQGPPT(1)PAK 121.56 0.0062131 19987000 2421 1790.5 3600.8 2705 1779.4 1875.4 2044 2325.1 1970.7 3074.3 TRUE FALSE 2454.901469 1985.992845 2691.733506 2531.513407 2021.784405 2207.975858 2431.83833 2127.568242 2159.99454 2447.755972 1.002919203 0.811352466 1.099673961 1.034218049 0.825974659 0.902040842 0.993497047 0.869191319 0.882438676 1 11.25724402 -6.745449527 24.99989858 0.909207819 0.982536944 0.158343875 0.084116901 496.0725322 775598.8919 0.025310149 0.032570022 1.80E-07 6.745449527 0.073329125 VLS(ph)GHLLGRPR ddPTM_K562_Paclitaxel_30min_R1 1 VLSGHLLGRPR 11 1 B8ZZ81;O00116 B8ZZ81 AGPS "Alkyldihydroxyacetonephosphate synthase, peroxisomal" 1 VLS(1)GHLLGRPR 78.548 0.02318 21203000 1488.9 1828.6 2804.1 2296.3 1893.3 1732.8 1439.7 1706.3 1831.1 2125.7 TRUE FALSE 1509.749194 2028.252732 2096.170274 2149.025596 2151.199514 2040.08775 1712.875559 1561.339165 2006.985337 1692.481173 0.89203308 1.198390129 1.238519109 1.269748597 1.271033054 1.205382832 1.012049993 0.922514938 1.18582432 1 10.72492407 -7.762009479 24.99950819 1.023640197 1.191045981 0.269663218 0.119053407 19.59938712 859379.7347 0.048645463 0.035050508 1.73E-08 7.762009479 0.167405784 VLS(ph)PGVSHR ddPTM_K562_Paclitaxel_30min_R1 1 VLSPGVSHR 9 0 Q14676;Q14676-3;Q14676-2;Q14676-4;A2AB07;A2AB05 Q14676 MDC1 Mediator of DNA damage checkpoint protein 1 1 VLS(1)PGVSHR 81.625 0.023569 5034400 1559.1 1512.8 1999 1697 1470.3 1430.5 1169.6 1550.2 1415.2 2510.4 TRUE FALSE 1580.93221 1677.97262 1494.327727 1588.162015 1670.579752 1684.17909 1391.525494 1418.500834 1551.136283 1998.779102 0.790948939 0.839498781 0.747620247 0.79456605 0.83580009 0.842603912 0.696187734 0.709683643 0.776041876 1 10.96490332 VLS(ph)PLIIK ddPTM_K562_Paclitaxel_30min_R1 2 VLSPLIIK 8 0 Q8NCN4 Q8NCN4 RNF169 E3 ubiquitin-protein ligase RNF169 1 VLS(1)PLIIK;VLS(1)PLIIK 89.886 0.015762 100385000 12145.2 11029.2 20516 14043.1 11190.8 8805.7 9303.3 12095.9 12166.5 15798.2 TRUE FALSE 12315.27027 12233.40535 15336.48206 13142.43842 12715.17642 10367.26726 11068.55261 11068.27779 13335.14669 12578.51817 0.979071629 0.972563317 1.219259841 1.04483201 1.010864416 0.82420418 0.879956801 0.879934953 1.060152437 1 13.61867435 -7.042008496 6.255354933 0.917681016 1.056518173 0.306972846 0.088523007 0.243886572 25.89970588 0.030072001 0.030738668 9.08E-08 7.042008496 0.138837157 VLS(ph)PLRS(ph)PPLIGSESAYESFLSADDKASGR ddPTM_K562_Paclitaxel_30min_R1 1 VLSPLRSPPLIGSESAYESFLSADDKASGR 30 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 VLS(1)PLRS(1)PPLIGSESAYESFLSADDKASGR 81.94 8.70E-07 61932000 1466.8 961.49 2479.9 1254.2 1134.5 818.43 873.72 1526.9 1233 1805.5 TRUE FALSE 1487.339725 1066.46873 1853.818574 1173.761226 1289.038107 963.5670692 1039.503809 1397.180314 1351.435159 1437.538109 1.034643684 0.741871623 1.289578734 0.816507902 0.89669839 0.670289757 0.723113914 0.971925757 0.940103884 1 10.48938449 -4.916267384 16.51670713 0.891026049 4.504453895 0.058217161 0.168648786 9391460.053 24773956.88 0.042698154 1222720188 1.21E-05 4.916267384 3.613427846 VLS(ph)PLRSPPLIGSES(ph)AYESFLSADDKASGR ddPTM_K562_Paclitaxel_30min_R1 1 VLSPLRSPPLIGSESAYESFLSADDKASGR 30 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 2 VLS(0.695)PLRS(0.309)PPLIGS(0.333)ES(0.587)AY(0.063)ES(0.01)FLS(0.002)ADDKASGR 51.038 0.018778 39736000 1718 1484.5 3092.5 2066.3 1195.2 1124.5 1034.1 1827.2 1566.6 2454 TRUE FALSE 1742.0573 1646.58273 2311.760127 1933.776766 1358.006475 1323.914286 1230.315077 1671.967955 1717.07893 1953.873453 0.891591673 0.842727418 1.183167786 0.989714438 0.695032973 0.677584459 0.629680021 0.855719674 0.878807646 1 10.93212132 -6.750237584 24.76241378 0.768672926 0.981964293 0.318592068 0.13204357 219.1901675 484533.7373 0.040685564 0.052024991 1.78E-07 6.750237584 0.213291368 VLS(ph)TSTDLEAAVADALKKPVR ddPTM_K562_Paclitaxel_30min_R1 1 VLSTSTDLEAAVADALKKPVR 21 2 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 1 VLS(0.38)T(0.38)S(0.105)T(0.135)DLEAAVADALKKPVR 98.76 0.00028318 40309000 5288.5 3441.4 10268 5280.2 3756.8 2991.4 3523.9 4955.3 6467.5 7841.2 TRUE FALSE 5362.555316 3817.14369 7675.716407 4941.551605 4268.539763 3521.882789 4192.541629 4534.316335 7088.732273 6243.159136 0.858949003 0.611412204 1.229460316 0.7915146 0.683714714 0.564118696 0.671541689 0.726285561 1.135439946 1 12.60806052 -8.758144559 24.99882283 1.067720041 0.765425066 0.314411897 0.177537306 99.90446095 758053.4411 0.13847563 0.04744594 1.75E-09 8.758144559 -0.302294975 VLSAPPHFHFGQTNRT(ph)PEFLR ddPTM_K562_Paclitaxel_30min_R1 1 VLSAPPHFHFGQTNRTPEFLR 21 1 P26641;P26641-2 P26641 EEF1G Elongation factor 1-gamma 1 VLSAPPHFHFGQT(0.04)NRT(0.96)PEFLR 73.138 0.0052826 11532000 1148.1 1011.9 961.08 1025.4 643.51 582.86 1481.6 2205.6 1463.9 2518.9 TRUE FALSE 1164.176942 1122.382664 718.4434675 959.6354335 731.1669567 686.2220372 1762.725866 2018.220513 1604.514136 2005.546797 0.580478573 0.559639229 0.358228224 0.478490671 0.364572374 0.342162067 0.878925322 1.006319332 0.800038243 1 10.96977991 -7.806378332 7.142564745 0.925588343 0.446145758 0.861596588 0.093113564 0.076111458 9.521014494 0.040266134 0.027325306 1.56E-08 7.806378332 -0.479442585 VLSNRGDS(ph)LSR ddPTM_K562_Paclitaxel_30min_R1 1 VLSNRGDSLSR 11 1 M0R0F9;W4VSQ9;Q15642-4;Q15642-2;Q15642-3;Q15642 M0R0F9 TRIP10 Cdc42-interacting protein 4 1 VLSNRGDS(0.7)LS(0.3)R 108.72 0.016776 51342000 2760.4 2622.3 2855.7 2300.1 2328.5 2556.1 2707 3260.5 2763.1 4017.7 TRUE FALSE 2799.054117 2908.611582 2134.743216 2152.581881 2645.681122 3009.388446 3220.639119 2983.500174 3028.508101 3198.890535 0.875007784 0.909256366 0.667338627 0.672915143 0.8270621 0.940760058 1.00679879 0.932667167 0.946737023 1 11.64335591 -7.223269745 3.486277435 0.966124369 0.779623037 0.587651109 0.074095629 0.195759016 4.961014708 0.029174445 0.028014539 5.98E-08 7.223269745 -0.186501331 VLSPLRS(ph)PPLIGSESAYESFLSADDK ddPTM_K562_Paclitaxel_30min_R1 2 VLSPLRSPPLIGSESAYESFLSADDK 26 1 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 VLS(0.254)PLRS(0.746)PPLIGSESAYESFLSADDK;VLS(0.036)PLRS(0.958)PPLIGS(0.004)ES(0.001)AY(0.001)ESFLSADDK 99.064 6.78E-06 34818000 2780.4 2996 4924.8 3531.6 2637 2631.1 2857.3 4366.2 2367.04 4350.3 TRUE FALSE 2819.334178 3323.113412 3681.473331 3305.098983 2996.204045 3097.688643 3399.457759 3995.264057 2594.404768 3463.706472 0.813964521 0.959409649 1.062871049 0.954208738 0.865028278 0.8943277 0.981450878 1.153464963 0.749025585 1 11.75810096 -7.849087912 10.12440352 0.984036249 0.931437295 0.032830232 0.110615094 1.327463452 142.6914782 0.046001258 0.031009683 1.42E-08 7.849087912 -0.052598955 VLSPLRS(ph)PPLIGSESAYESFLSADDKASGR ddPTM_K562_Paclitaxel_30min_R1 1 VLSPLRSPPLIGSESAYESFLSADDKASGR 30 2 P46821 P46821 MAP1B Microtubule-associated protein 1B;MAP1B heavy chain;MAP1 light chain LC1 1 VLS(0.053)PLRS(0.944)PPLIGS(0.003)ES(0.001)AYESFLSADDKASGR 104.96 1.38E-09 106020000 1155.2 1311.7 1953.9 1368.2 1199.8 1111.8 1070.8 1604.6 1590.9 2115 TRUE FALSE 1171.376364 1454.915842 1460.613779 1280.449776 1363.233073 1308.96212 1273.97871 1468.279214 1743.713053 1683.961839 0.695607428 0.863983855 0.867367505 0.760379331 0.809539172 0.777311035 0.756536568 0.871919529 1.035482523 1 10.71764373 -8.614606749 3.588656746 1.017539369 0.795598143 0.768766348 0.049279825 0.111205964 2.693219616 0.039288089 0.012961404 2.43E-09 8.614606749 -0.221941226 VLSTS(ph)TDLEAAVADALKKPVR ddPTM_K562_Paclitaxel_30min_R1 1 VLSTSTDLEAAVADALKKPVR 21 2 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 1 VLS(0.032)T(0.122)S(0.473)T(0.372)DLEAAVADALKKPVR 84.436 0.0090554 22308000 1611.6 881.51 2994.4 1462 792.38 684.71 716.79 1958.9 1525.5 2073.2 TRUE FALSE 1634.167372 977.7562429 2238.426686 1368.233864 900.3155711 806.1337047 852.7971606 1792.479218 1672.031091 1650.680702 0.989996048 0.592335175 1.356062795 0.828890689 0.545420789 0.488364409 0.516633629 1.085903055 1.012934294 1 10.68884537 -11.32967781 14.74653104 1 0.813624505 0.03440683 0.27465236 1.86E-10 0 0.282208273 0.06844556 4.68E-12 11.32967781 -0.186375495 VLSTST(ph)DLEAAVADALKKPVRR ddPTM_K562_Paclitaxel_30min_R1 1 VLSTSTDLEAAVADALKKPVRR 22 3 Q7Z460 Q7Z460 CLASP1 CLIP-associating protein 1 1 VLS(0.238)T(0.238)S(0.238)T(0.287)DLEAAVADALKKPVRR 75.868 0.0010291 7727700 1877.6 1239.4 3470.8 1848.7 1277.5 1084.1 1287.6 2087.7 3961 2018.6 TRUE FALSE 1903.892193 1374.721883 2594.553614 1730.132656 1451.517128 1276.349913 1531.915378 1910.336854 4341.471748 1607.208212 1.184595859 0.855347722 1.614323268 1.076483211 0.903129487 0.794140986 0.953153031 1.188605708 2.701250352 1 10.65034113 -8.551434618 24.99917666 1.882060752 1.05459644 0.339170754 0.43824033 213.0334105 186495.7321 0.275308938 0.104060552 2.81E-09 8.551434618 -0.827464312 VLT(ph)PELYAELR ddPTM_K562_Paclitaxel_30min_R1 4 VLTPELYAELR 11 0 P12277;G3V4N7;G3V461 P12277 CKB Creatine kinase B-type 1 VLT(1)PELYAELR;VLT(1)PELYAELR;VLT(1)PELYAELR;VLT(1)PELYAELR 153.49 0.0014232 38861600 4900.22 4945.8 7344.7 5878.3 4416.75 4687.38 4441.5 5012.46 4890.16 6152.2 TRUE FALSE 4968.838198 5485.79917 5490.439647 5501.292148 5018.386126 5518.621029 5284.251439 4586.620236 5359.881718 4898.378263 1.014384339 1.119921508 1.120868857 1.123084387 1.024499509 1.126622064 1.0787757 0.936354848 1.094215561 1 12.25808847 -8.031012537 24.14881572 1.010684138 1.090913088 0.31496767 0.051896884 502.1449461 391007.2908 0.023129023 0.013377186 9.31E-09 8.031012537 0.08022895 VLTANSNPS(ph)SPSAAKR ddPTM_K562_Paclitaxel_30min_R1 1 VLTANSNPSSPSAAKR 16 1 Q9NV56 Q9NV56 MRGBP MRG/MORF4L-binding protein 1 VLTANSNPS(0.647)S(0.353)PSAAKR 83.948 0.010445 48206000 1073.2 992.11 1968.6 1309.5 1060.4 820.29 1037.9 1665.4 713.41 1456.9 TRUE FALSE 1088.228111 1100.431925 1471.602583 1225.514531 1204.844433 965.7569141 1234.836107 1523.913875 781.9362181 1159.98298 0.938141447 0.94866213 1.26864153 1.056493545 1.038674233 0.832561279 1.064529504 1.313738133 0.674092837 1 10.17988792 -7.013701682 24.04270095 0.994681597 1.059268001 0.037109419 0.175075559 1890.45489 3317236.553 0.056907318 0.059349055 9.69E-08 7.013701682 0.064586403 VLTANSNPSS(ph)PSAAK ddPTM_K562_Paclitaxel_30min_R1 2 VLTANSNPSSPSAAK 15 0 Q9NV56 Q9NV56 MRGBP MRG/MORF4L-binding protein 1 VLTANS(0.021)NPS(0.317)S(0.661)PS(0.001)AAK;VLTANS(0.005)NPS(0.051)S(0.472)PS(0.472)AAK 100.4 0.0051159 26865000 3970.58 3561.41 6800.6 4439.1 3567.54 3078.03 3376.54 4508.7 2744.98 6049.1 TRUE FALSE 4026.18037 3950.256788 5083.704421 4154.395995 4053.499347 3623.875403 4017.220838 4125.657793 3008.647594 4816.2901 0.835950553 0.820186639 1.055522885 0.862571795 0.841622756 0.7524205 0.834090297 0.856604919 0.624681556 1 12.23370658 -6.768158034 3.190859664 0.806172862 0.902601583 0.110670194 0.106114023 0.48706848 10.28449301 0.033024546 0.040879857 1.71E-07 6.768158034 0.096428721 VLTLS(ph)DDLER ddPTM_K562_Paclitaxel_30min_R1 1 VLTLSDDLER 10 0 P55010 P55010 EIF5 Eukaryotic translation initiation factor 5 1 VLT(0.022)LS(0.978)DDLER 94.82 0.013521 7742900 1216.2 1285.9 1390.3 1336.3 1220.3 1350.4 1061 1344.5 1026.2 1342.6 TRUE FALSE 1233.230552 1426.298911 1039.30157 1250.595699 1386.52552 1589.874479 1262.319211 1230.276333 1124.771095 1068.977383 1.153654485 1.334264815 0.972239064 1.169899119 1.297057863 1.487285423 1.180866154 1.150890891 1.052193538 1 10.06201561 -11.00114754 7.080621607 0.999999983 1.205516394 0.158079154 0.137777292 4.00E-08 5.62E-09 0.140570972 0.034093466 9.97E-12 11.00114754 0.205516411 VLTLSERPLDFLDLERPPT(ph)TPQNEEIR ddPTM_K562_Paclitaxel_30min_R1 1 VLTLSERPLDFLDLERPPTTPQNEEIR 27 2 Q9GZY8-5;C9JHF5;A0A0A0MS29;Q9GZY8-4;Q9GZY8-3;Q9GZY8-2;Q9GZY8 Q9GZY8-5 MFF Mitochondrial fission factor 1 VLTLSERPLDFLDLERPPT(0.5)T(0.5)PQNEEIR 73.404 0.0018163 29880000 847.47 857.85 696.26 656.89 622.21 527.21 788.25 929.04 819.35 1147.5 TRUE FALSE 859.3371947 951.5129641 520.4805518 614.7600155 706.9655361 620.7032911 937.8163226 850.1122531 898.0522285 913.6388701 0.940565493 1.041454118 0.569678643 0.672869813 0.773791001 0.679374873 1.026462811 0.93046857 0.982940041 1 9.83548022 -7.770251853 24.97780377 0.9791736 0.776863424 0.379579986 0.128497743 234.1582015 663683.8559 0.05816718 0.03988188 1.70E-08 7.770251853 -0.202310176 VLTPELYAELR ddPTM_K562_Paclitaxel_30min_R1 1 VLTPELYAELR 11 0 P12277;G3V4N7;G3V461 P12277 CKB Creatine kinase B-type 0 114.5 0.0297 5834700 1111.5 1050.4 1207.9 1019.2 904.54 1061.4 981.86 1102.7 929.4 1280.7 FALSE TRUE 1127.064429 1165.086224 902.9507059 953.8330738 1027.753662 1249.624387 1168.162809 1009.018752 1018.673023 1019.692637 1.105298193 1.142585699 0.885512627 0.935412338 1.007905348 1.225491233 1.145602868 0.989532253 0.999000077 1 9.993918635 VLVHT(ph)SVSPS(ph)PDNLRR ddPTM_K562_Paclitaxel_30min_R1 1 VLVHTSVSPSPDNLRR 16 1 H0YDT1;A0A087WZH6;Q6WN33;Q6WN34;Q6WN34-2 H0YDT1 CHRDL2;CHL2 Chordin-like protein 2 2 VLVHT(0.983)S(0.019)VS(0.052)PS(0.946)PDNLRR 45.992 0.028962 6421600 0 0 0 0 0 0 59.276 0 0 63.363 TRUE FALSE 0 0 0 0 0 0 70.52331156 0 0 50.44958582 0 0 0 0 0 0 1.39789674 0 0 1 5.65677052 -7.609419943 24.94613476 0.542261416 4.82E-08 0.357013342 0.39111958 28.55351101 8225.714685 0.149320761 0.115663365 2.46E-08 7.609419943 -0.542261368 VMDIPYLNLEGPD ddPTM_K562_Paclitaxel_30min_R1 1 VMDIPYLNLEGPD 13 0 H3BRK1 H3BRK1 PARN 0 79.492 0.019199 0 241.9 200.07 296.26 361.93 190.42 315.28 314.92 415.98 258.88 286.85 FALSE TRUE 245.2873463 221.9143192 221.4654989 338.7174297 216.3584278 371.1904812 374.674426 380.6399025 283.7465807 228.3898125 1.073985497 0.971647188 0.969682038 1.483067156 0.947320835 1.62524973 1.640504109 1.666623823 1.242378447 1 7.83535449 -7.262748951 24.99918582 1.489462271 1.09786136 0.329543808 0.240257747 126.3084303 2411151.811 0.080915108 0.075302062 5.46E-08 7.262748951 -0.391600911 VMDS(ph)DEDDDY ddPTM_K562_Paclitaxel_30min_R1 4 VMDSDEDDDY 10 0 O14737;K7EQA1 O14737 PDCD5 Programmed cell death protein 5 1 VMDS(1)DEDDDY;VMDS(1)DEDDDY;VMDS(1)DEDDDY;VMDS(1)DEDDDY 161.51 0.0002268 182506000 11261.3 10505.3 14965.7 12014.3 9932.7 10044.9 10473 11515 10064.3 13227.5 TRUE FALSE 11418.99294 11652.30418 11187.42394 11243.75657 11285.7019 11826.22198 12460.19708 10536.72888 11031.02098 10531.72824 1.084246829 1.106400005 1.062259079 1.067607929 1.071590687 1.122913705 1.183110387 1.000474816 1.047408434 1 13.36245458 -8.307103841 24.9983533 1.017956176 1.097121507 0.539168872 0.035418787 389.9101256 213448.7444 0.020508276 0.009851914 4.93E-09 8.307103841 0.079165331 VMLMASPS(ph)MEDLYHK ddPTM_K562_Paclitaxel_30min_R1 1 VMLMASPSMEDLYHK 15 0 F5H1H2;F5H2E6;A0A0C4DGG8;Q8IX12-2;Q8IX12;F5H3E1 F5H1H2 CCAR1 Cell division cycle and apoptosis regulator protein 1 1 VMLMASPS(1)MEDLYHK 172.56 1.28E-06 20927000 1957.4 1596.9 2635.6 1967.9 1724.7 1554.2 1868.5 2478.6 1614.5 3030.1 TRUE FALSE 1984.809639 1771.254942 1970.210183 1841.687702 1959.633339 1829.815548 2223.038121 2268.027459 1769.579939 2412.563957 0.822697211 0.734179476 0.816645784 0.763373629 0.812261716 0.758452659 0.921442151 0.940090087 0.733485193 1 11.23635147 -7.76078238 24.99999857 0.893761874 0.784058723 0.399740024 0.068417402 18.38319037 699557.5473 0.025846528 0.01880764 1.73E-08 7.76078238 -0.109703152 VMSS(ph)PSAMK ddPTM_K562_Paclitaxel_30min_R1 1 VMSSPSAMK 9 0 A0A494C142;Q99728-3;Q99728-2;Q99728 A0A494C142 BARD1 BRCA1-associated RING domain protein 1 1 VMS(0.034)S(0.959)PS(0.008)AMK 82.261 0.03122 12004000 2440.3 2177.6 4355.2 3131.3 2512.6 2363.6 2081.2 2912.3 2952.3 3697.5 TRUE FALSE 2474.471729 2415.357732 3255.675896 2930.472433 2854.858659 2782.751273 2476.096835 2664.881937 3235.881606 2943.94747 0.840528492 0.820448651 1.105887903 0.9954228 0.969738315 0.94524488 0.841080509 0.905207027 1.09916418 1 11.52353621 -5.71610554 24.99998547 0.972926218 0.830487973 0.385827295 0.076027076 146.5269604 80802.33039 0.02037275 0.053900724 1.92E-06 5.71610554 -0.142438245 VMSS(ph)SNPDLAGTHSAADEEVKNIMSSK ddPTM_K562_Paclitaxel_30min_R1 1 VMSSSNPDLAGTHSAADEEVKNIMSSK 27 1 A2A370;A2A369;Q8NF50-4;Q8NF50-3;Q8NF50-2;Q8NF50 A2A370 DOCK8 Dedicator of cytokinesis protein 8 1 VMS(0.169)S(0.413)S(0.413)NPDLAGT(0.004)HSAADEEVKNIMSSK 48.865 0.013749 17976000 1302.4 744.52 2635.3 1277 929.22 852.68 623.54 1369.1 1196.6 1518.5 TRUE FALSE 1320.637618 825.8092114 1969.985922 1195.098936 1055.795496 1003.890826 741.8534599 1252.786409 1311.538777 1209.028866 1.092312727 0.683035149 1.629395275 0.988478413 0.87325913 0.830328252 0.613594498 1.036192306 1.084786983 1 10.23963298 -6.516355089 24.73906918 0.893469778 1.126261487 0.14648651 0.24531447 499.4959067 1894196.814 0.072698788 0.097480743 3.05E-07 6.516355089 0.232791709 VMTIPYQPMPASS(ph)PVICAGGQDR ddPTM_K562_Paclitaxel_30min_R1 5 VMTIPYQPMPASSPVICAGGQDR 23 0 Q15365 Q15365 PCBP1 Poly(rC)-binding protein 1 1 VMTIPYQPMPAS(0.29)S(0.71)PVICAGGQDR;VMTIPYQPMPAS(0.212)S(0.788)PVICAGGQDR;VMTIPYQPMPAS(0.269)S(0.731)PVICAGGQDR;VMTIPYQPMPAS(0.273)S(0.727)PVICAGGQDR;VMTIPYQPMPAS(0.325)S(0.674)PVICAGGQDR 147.75 6.22E-19 397415000 17776.6 17113.2 19723.4 17540.4 14229.2 15398.5 17684.5 21278.9 18250.2 22515.7 TRUE FALSE 18025.52725 18981.67705 14743.98373 16415.43725 16167.45794 18129.20777 21040.04156 19471.12463 20003.21325 17926.98798 1.005496699 1.058832475 0.822446233 0.915682951 0.901850214 1.011280188 1.173651791 1.086134751 1.115815623 1 14.12984549 -7.53788262 5.877655727 1.100885789 0.940675409 0.5076397 0.070881405 0.135410367 16.5510541 0.027938113 0.02219336 2.90E-08 7.53788262 -0.16021038 VMVY(ph)S(ph)ALR ddPTM_K562_Paclitaxel_30min_R1 1 VMVYSALR 8 0 Q96BI3-3;Q96BI3 Q96BI3-3 APH1A Gamma-secretase subunit APH-1A 2 VMVY(1)S(1)ALR 83.801 0.017992 144070000 4646.6 4455.1 5029.3 4898.1 4473.4 4791.1 5017.9 5110.3 3979.1 5409.2 TRUE FALSE 4711.666736 4941.522884 3759.591013 4583.957789 5082.752815 5640.734315 5970.02033 4676.148118 4361.310334 4306.802071 1.094005868 1.14737636 0.872942604 1.06435302 1.180168657 1.309726851 1.386184048 1.08575877 1.01265632 1 12.07240131 -6.727286138 5.017203636 1.185742326 1.037494588 0.149539988 0.131363224 0.324672143 19.65698213 0.042380679 0.053484055 1.87E-07 6.727286138 -0.148247739 VNAGMGNS(ph)GITT(ph)ELT(ph)LK ddPTM_K562_Paclitaxel_30min_R1 1 VNAGMGNSGITTELTLK 17 0 Q9UJ78-3 Q9UJ78-3 3 VNAGMGNS(1)GIT(0.05)T(0.95)ELT(1)LK 78.418 0.010391 0 2157 2553.9 2869 2552.8 2417.5 2033 1851.4 2171.4 1982.1 2478.1 TRUE FALSE 2187.204655 2832.743439 2144.685467 2389.074834 2746.804429 2393.524005 2202.693485 1986.926017 2172.489561 1973.06186 1.108533239 1.43570939 1.086983389 1.210846392 1.392153224 1.21310135 1.116383389 1.007026722 1.10107524 1 10.94622047 -7.858131767 2.84692301 1.042568053 1.250446552 0.440959525 0.104984797 0.247677888 4.04202171 0.048311374 0.030748475 1.39E-08 7.858131767 0.207878498 VNDAEPGS(ph)PEAPQGK ddPTM_K562_Paclitaxel_30min_R1 3 VNDAEPGSPEAPQGK 15 0 Q8N8A6 Q8N8A6 DDX51 ATP-dependent RNA helicase DDX51 1 VNDAEPGS(1)PEAPQGK;VNDAEPGS(1)PEAPQGK;VNDAEPGS(1)PEAPQGK 157.83 4.03E-05 170279000 19035.3 14971.3 36062.9 21542 16834.4 14239 12433.2 21322.3 17959.2 25938.8 TRUE FALSE 19301.85293 16605.91716 26958.37487 20160.39254 19127.53029 16764.08672 14792.33479 19510.83753 19684.2614 20652.45832 0.934603166 0.804064916 1.305334912 0.976173985 0.926162396 0.811723547 0.716250558 0.944722281 0.953119532 1 14.3340259 -6.844869117 3.427589112 0.871687301 1.013220546 0.137984757 0.138868183 0.447446366 10.41322613 0.046523528 0.054828403 1.43E-07 6.844869117 0.141533245 VNEAREELMR ddPTM_K562_Paclitaxel_30min_R1 2 VNEAREELMR 10 1 F5H423;P61204-2;P84077;P61204 F5H423 ARF3;ARF1 ADP-ribosylation factor 3;ADP-ribosylation factor 1 0 ; 148.91 0.002591 43585000 4504 3692.2 5366.5 4275.6 4020.7 3697 3179.9 4843.9 4987 4860.2 FALSE TRUE 4567.069896 4095.326882 4011.660703 4001.382153 4568.387411 4352.611042 3783.269425 4432.38046 5466.023633 3869.688572 1.180216395 1.058309165 1.036688258 1.034032088 1.180556865 1.12479621 0.977667674 1.145410122 1.412522876 1 11.91800175 -8.528367347 24.98931628 1.230496463 1.083366432 0.156501928 0.111003324 215.8477214 982708.224 0.069660137 0.026502701 2.96E-09 8.528367347 -0.147130031 VNERDVPKAT(ph)IS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 VNERDVPKATISR 13 2 F2Z2X8;O95171-3;O95171-2;O95171 F2Z2X8 SCEL Sciellin 2 VNERDVPKAT(1)IS(1)R 95.195 0.010678 60097000 4286 3870.7 4479.5 4497.1 3688.4 3901.5 3900.9 4191.2 3896.6 4249.1 TRUE FALSE 4346.017223 4293.316116 3348.594823 4208.676134 4190.822525 4593.376245 4641.075411 3835.131399 4270.88584 3383.131088 1.284613901 1.269036288 0.989791627 1.244018049 1.238740804 1.357729312 1.371828431 1.133604138 1.262406253 1 11.72414336 -10.31221235 1.242163421 0.998104571 1.237709363 0.320820847 0.104229486 57.25262905 50.9156379 0.69572329 0.03185245 4.87E-11 10.31221235 0.239604792 VNFSEEGET(ph)EEDDQDSSHSSVTTVK ddPTM_K562_Paclitaxel_30min_R1 2 VNFSEEGETEEDDQDSSHSSVTTVK 25 0 A0A0A0MSK5;J3KN66;Q5JTV8-2;Q5JTV8;Q5JTV8-3;H0YD16 A0A0A0MSK5 TOR1AIP1 Torsin-1A-interacting protein 1 1 VNFS(0.188)EEGET(0.812)EEDDQDSSHSSVTTVK;VNFS(0.254)EEGET(0.745)EEDDQDS(0.001)SHSSVTTVK 106.27 2.61E-06 87104000 3299 2422 4765.2 3250.1 2075.68 1649.23 2086.3 2918.8 4959.5 3960.2 TRUE FALSE 3345.196178 2686.442151 3562.166325 3041.653133 2358.422758 1941.697784 2482.164534 2670.829721 5435.882135 3153.109066 1.060919907 0.851997852 1.129731402 0.964652053 0.74796739 0.615804193 0.787211759 0.847046412 1.723975296 1 11.62255936 -8.732054877 24.99899974 1.361987803 0.870445078 0.450066827 0.214968296 155.7489463 132504.6918 0.144265475 0.054509175 1.85E-09 8.732054877 -0.491542725 VNGDDHHEEDMDMS(ph)D ddPTM_K562_Paclitaxel_30min_R1 6 VNGDDHHEEDMDMSD 15 0 Q5T757;Q05519-2;Q05519 Q5T757 SRSF11 Serine/arginine-rich splicing factor 11 1 VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D;VNGDDHHEEDMDMS(1)D 178.67 1.40E-06 602009500 18628.6 18626.5 27827.1 21195.7 18213.9 16976 15721.8 20404.5 18641 21726.6 TRUE FALSE 18889.45787 20660.20426 20801.80444 19836.30267 20694.94154 19986.45525 18704.92948 18671.01036 20431.55134 17298.70699 1.091957791 1.194320724 1.202506317 1.146692795 1.196328809 1.155372783 1.081290612 1.079329823 1.181102804 1 14.07837659 -7.687301474 5.110696548 1.092094953 1.169285714 0.365956701 0.050693912 0.232513752 10.9817103 0.01920166 0.014523276 2.05E-08 7.687301474 0.077190761 VNGTTVS(ph)SPSTSLQR ddPTM_K562_Paclitaxel_30min_R1 1 VNGTTVSSPSTSLQR 15 0 A0A075B6G3;A0A5H1ZRR9;A0A087WTU7;A0A5H1ZRP8;A0A087WV90;H0Y304;A0A5H1ZRQ8;A0A5H1ZRQ1;A0A5H1ZRP9;A0A5H1ZRP7;P11532-16;P11532-2;P11532;P11532-7;P11532-5;P11532-11;P11532-6;P11532-4;P11532-3;P11532-13;P11532-17;P11532-14;P11532-8;P11532-15;P11532-12;P11532-9 A0A075B6G3 DMD Dystrophin 1 VNGT(0.002)T(0.003)VS(0.455)S(0.455)PS(0.074)T(0.007)S(0.004)LQR 107.13 0.0025078 12811000 976.72 1023.5 1485.2 1286.6 871.75 989.11 986.47 1024.6 1420.5 1199.3 TRUE FALSE 990.3970934 1135.249191 1110.242891 1204.083235 990.4971088 1164.514771 1173.647533 937.5538346 1556.945372 954.8820017 1.037193173 1.188889506 1.162701663 1.260975945 1.037297914 1.219537879 1.229102162 0.98185308 1.630510753 1 9.899178655 -8.711996097 24.99999317 1.315282034 1.148372187 0.149412374 0.166525767 172.1261487 87032.01026 0.102005947 0.038554447 1.94E-09 8.711996097 -0.166909846 VNGTTVSS(ph)PSTSLQR ddPTM_K562_Paclitaxel_30min_R1 1 VNGTTVSSPSTSLQR 15 0 A0A075B6G3;A0A5H1ZRR9;A0A087WTU7;A0A5H1ZRP8;A0A087WV90;H0Y304;A0A5H1ZRQ8;A0A5H1ZRQ1;A0A5H1ZRP9;A0A5H1ZRP7;P11532-16;P11532-2;P11532;P11532-7;P11532-5;P11532-11;P11532-6;P11532-4;P11532-3;P11532-13;P11532-17;P11532-14;P11532-8;P11532-15;P11532-12;P11532-9 A0A075B6G3 DMD Dystrophin 1 VNGT(0.001)T(0.001)VS(0.223)S(0.728)PS(0.047)T(0.001)SLQR 144.15 4.47E-06 13255000 1307.4 1210.1 1722.2 1489.6 1022.5 1158.5 1073.9 1229.6 1222.9 1281.7 TRUE FALSE 1325.707634 1342.22281 1287.40931 1394.063723 1161.781811 1363.943709 1277.666919 1125.137805 1340.365009 1020.488836 1.299090775 1.315274369 1.261561385 1.366074447 1.138456169 1.336559167 1.252014597 1.102547882 1.313453868 1 9.995044685 -15 0.151258355 0.038604583 1.344205334 0.534992418 0.076897158 99.03666853 0.885068723 28.46262531 0.361612775 1.00E-15 15 1.30560075 VNLEESSGVENS(ph)PAGARPK ddPTM_K562_Paclitaxel_30min_R1 2 VNLEESSGVENSPAGARPK 19 1 Q8WVM8-2;Q8WVM8-3;Q8WVM8 Q8WVM8-2 SCFD1 Sec1 family domain-containing protein 1 1 VNLEESS(0.002)GVENS(0.998)PAGARPK;VNLEESS(0.001)GVENS(0.999)PAGARPK 175.52 1.54E-13 24977000 1465.61 1618.12 3090.1 1732 1087.16 1341.79 1393.37 1913.04 1851.44 2859.4 TRUE FALSE 1486.133062 1794.791814 2309.966037 1620.917272 1235.249598 1579.737617 1657.754684 1750.515311 2029.279084 2276.65271 0.652771086 0.788346771 1.01463259 0.711973884 0.542572695 0.693886077 0.728154398 0.768898701 0.891343276 1 11.15269852 -8.907561424 2.152078879 0.998678999 0.736461326 0.374042503 0.112815869 0.349248974 3.490506678 0.118490419 0.033185893 1.24E-09 8.907561424 -0.262217673 VNLT(ph)GT(ph)IQLLEIMK ddPTM_K562_Paclitaxel_30min_R1 1 VNLTGTIQLLEIMK 14 0 Q5QPP1;Q5QPP3;Q5QPP4;Q14376-2;Q14376 Q5QPP1 GALE UDP-glucose 4-epimerase 2 VNLT(1)GT(1)IQLLEIMK 78.964 0.018607 94861000 1180 1314.4 1210.9 1558 1498 1266.1 1358 1486.1 534.37 1574 TRUE FALSE 1196.523641 1457.910637 905.1933188 1458.076853 1702.052961 1490.625058 1615.673411 1359.846529 585.6986261 1253.217936 0.954761025 1.163333683 0.722295215 1.163466315 1.358146027 1.189438018 1.289219827 1.085083839 0.467355764 1 10.29142161 -8.640105729 8.487975199 0.736488184 1.124539174 0.357156772 0.205333555 0.261647843 18.04778955 0.141611832 0.053023356 2.29E-09 8.640105729 0.38805099 VNPSVNPSIS(ph)PAHGVAR ddPTM_K562_Paclitaxel_30min_R1 5 VNPSVNPSISPAHGVAR 17 0 B5MCN7;Q15788-2;Q15788-3;Q15788 B5MCN7 NCOA1 Nuclear receptor coactivator 1 1 VNPSVNPS(0.122)IS(0.878)PAHGVAR;VNPSVNPS(0.102)IS(0.897)PAHGVAR;VNPSVNPS(0.072)IS(0.928)PAHGVAR;VNPSVNPS(0.003)IS(0.997)PAHGVAR;VNPSVNPS(0.003)IS(0.997)PAHGVAR 226.14 4.58E-31 115079400 7999.04 6709.05 9129 7616.05 6547.52 6848.13 6331.96 7764.98 6585.21 8938.6 TRUE FALSE 8111.051239 7441.566768 6824.271044 7127.590641 7439.403074 8062.549703 7533.416355 7105.296482 7217.748844 7116.908413 1.139687455 1.045617891 0.958881392 1.001500965 1.04531387 1.132872483 1.058523718 0.998368402 1.014169134 1 12.79703495 -11.09202448 0.006481551 8.22E-05 2.021767583 0.102501303 0.052769179 42143.75641 50.42293974 8179.979868 7554.752405 8.09E-12 11.09202448 2.021685381 VNQSALEAVTPS(ph)PSFQQR ddPTM_K562_Paclitaxel_30min_R1 3 VNQSALEAVTPSPSFQQR 18 0 Q9UKG1 Q9UKG1 APPL1 DCC-interacting protein 13-alpha 1 VNQSALEAVT(0.004)PS(0.995)PSFQQR;VNQSALEAVT(0.003)PS(0.917)PS(0.08)FQQR;VNQSALEAVT(0.007)PS(0.926)PS(0.067)FQQR 269.99 2.32E-114 86224000 2649.79 2380.01 2710.46 2594.15 2183.18 2247.3 2383.07 3070.32 3287.3 2924.55 TRUE FALSE 2686.895235 2639.86754 2026.17085 2427.77283 2480.566078 2645.827101 2835.245092 2809.477152 3603.059853 2328.525105 1.153904345 1.133708 0.870152032 1.04262257 1.065294968 1.136267372 1.21761414 1.206547933 1.5473571 1 11.18520072 -7.684026701 1.602886057 1.277529753 1.045132668 0.277985315 0.143209028 0.457446957 2.402144882 0.075573138 0.048978207 2.07E-08 7.684026701 -0.232397085 VPAEDETQSIDS(ph)EDS(ph)FVPGR ddPTM_K562_Paclitaxel_30min_R1 1 VPAEDETQSIDSEDSFVPGR 20 0 J3KSI3;Q8WZ73-2;Q8WZ73 J3KSI3 RFFL E3 ubiquitin-protein ligase rififylin 2 VPAEDET(0.442)QS(0.232)IDS(0.752)EDS(0.574)FVPGR 94.882 0.0054604 7007100 354.15 475.14 711.17 419.22 452.2 358.87 385.63 506.31 363.15 525.89 TRUE FALSE 359.1091926 527.017392 531.6263379 392.3331056 513.7972958 422.5105557 458.8012794 463.2958052 398.0321801 418.7133293 0.857649297 1.258659219 1.269666621 0.936996933 1.227086075 1.009068797 1.095740802 1.106474938 0.950607856 1 8.709819035 -8.755608096 24.68660539 0.975303913 1.102708231 0.120006792 0.128542076 214.8159599 909453.3688 0.0888019 0.03153057 1.76E-09 8.755608096 0.127404318 VPAPFS(ph)PPPSKPR ddPTM_K562_Paclitaxel_30min_R1 2 VPAPFSPPPSKPR 13 1 Q9P206;Q9P206-3;Q9P206-2 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 1 VPAPFS(1)PPPSKPR;VPAPFS(0.999)PPPS(0.001)KPR 81.526 0.020668 15946200 2834.7 2504.1 4400.4 3635.8 2904.9 2219.4 2041.9 3023.6 3418.2 3919.2 TRUE FALSE 2874.394546 2777.506106 3289.464597 3402.616061 3300.59656 2612.979428 2429.339866 2766.726307 3746.533383 3120.464889 0.92114305 0.89009369 1.054158503 1.090419595 1.057725909 0.837368636 0.778518571 0.886639141 1.200633084 1 11.60754526 -7.246475438 24.75466064 0.923414742 1.004182996 0.053095497 0.120490558 1944.32065 3216467.982 0.042510739 0.042338835 5.67E-08 7.246475438 0.080768254 VPAQCTVPSHPQSTPVHS(ph)PDR ddPTM_K562_Paclitaxel_30min_R1 2 VPAQCTVPSHPQSTPVHSPDR 21 0 Q9NXL9-4;Q9NXL9 Q9NXL9-4 MCM9 DNA helicase MCM9 1 VPAQCTVPSHPQS(0.011)T(0.011)PVHS(0.977)PDR;VPAQCTVPSHPQS(0.07)T(0.136)PVHS(0.794)PDR 94.003 0.00045925 20994100 695.66 542.42 1140.79 838.75 529.65 775.21 542.71 807.05 359.14 1022.71 TRUE FALSE 705.4013863 601.6432499 852.7834554 784.9563291 601.797297 912.682609 645.6863894 738.4860651 393.6370017 814.2811406 0.86628727 0.738864282 1.04728381 0.963986871 0.739053463 1.120844587 0.792952651 0.906917805 0.483416577 1 9.669383179 VPAS(ph)PLPGLER ddPTM_K562_Paclitaxel_30min_R1 4 VPASPLPGLER 11 0 Q7KZI7-10;Q7KZI7-13;Q7KZI7-7;Q7KZI7-2;Q7KZI7-15;Q7KZI7-5;Q7KZI7-4;Q7KZI7-16;Q7KZI7-9;Q7KZI7;Q7KZI7-11;E9PC69;E7ETY4;Q7KZI7-8;Q7KZI7-14;Q7KZI7-6;Q7KZI7-3;Q7KZI7-12 Q7KZI7-10 MARK2 Serine/threonine-protein kinase MARK2 1 VPAS(1)PLPGLER;VPAS(1)PLPGLER;VPAS(1)PLPGLER;VPAS(1)PLPGLER 112.02 0.0050502 1215675000 6463.7 5910.94 7864.8 6830.3 5324 5602.7 5424.7 5968.5 6371.9 6717 TRUE FALSE 6554.211742 6556.316419 5879.233969 6392.235129 6049.218936 6596.260179 6454.008506 5461.438671 6983.949465 5348.071713 1.225528021 1.22592156 1.099318462 1.195241102 1.131102809 1.233390376 1.206791691 1.021197726 1.305881791 1 12.3848031 -11.41900491 3.655339164 0.998665088 1.17782601 0.339260741 0.076220439 55099028.53 38440600.63 682083.6644 0.017975245 3.81E-12 11.41900491 0.179160922 VPEASSEPFDT(ph)SSPQAGR ddPTM_K562_Paclitaxel_30min_R1 1 VPEASSEPFDTSSPQAGR 18 0 H0Y6F5;Q9H4I2 H0Y6F5 ZHX3 Zinc fingers and homeoboxes protein 3 1 VPEASSEPFDT(0.333)S(0.333)S(0.333)PQAGR 94.61 0.0039769 21655000 1347.2 1301.2 1928.4 1493.1 1203.1 1146.4 1183.4 1866.8 1207.7 1859.7 TRUE FALSE 1366.064956 1443.269416 1441.55157 1397.339249 1366.982589 1349.697944 1407.943972 1708.203688 1323.704981 1480.692119 0.922585417 0.974726209 0.973566045 0.943706818 0.923205149 0.911531794 0.950868823 1.153652178 0.893977191 1 10.53205598 -8.038326607 24.99496619 1.024740922 0.942731991 0.224487992 0.061697108 708.9969902 462374.4641 0.027039918 0.015615929 9.16E-09 8.038326607 -0.082008931 VPEASSEPFDTS(ph)SPQAGR ddPTM_K562_Paclitaxel_30min_R1 1 VPEASSEPFDTSSPQAGR 18 0 H0Y6F5;Q9H4I2 H0Y6F5 ZHX3 Zinc fingers and homeoboxes protein 3 1 VPEASS(0.001)EPFDT(0.143)S(0.672)S(0.185)PQAGR 94.922 0.001604 20240000 937.82 1117.3 1229.4 918.48 947.09 1080.7 882.05 1094.8 708.43 1250 TRUE FALSE 950.9523734 1239.290592 919.022765 859.5728038 1076.099692 1272.346971 1049.414383 1001.789906 776.4778668 995.2493139 0.955491614 1.245206176 0.923409594 0.863675857 1.081236307 1.278420345 1.054423619 1.006571813 0.780184277 1 9.958914161 -8.566172624 7.721549243 0.889548128 1.059337819 0.199923228 0.132200439 0.384978797 57.45525544 0.093231399 0.035032216 2.72E-09 8.566172624 0.169789691 VPEPPSSHSQGS(ph)GPSSGSPERGGDGLTFPR ddPTM_K562_Paclitaxel_30min_R1 1 VPEPPSSHSQGSGPSSGSPERGGDGLTFPR 30 1 Q8N137-5;Q8N137;Q8N137-3;Q8N137-2;I3L0P9 Q8N137-5 CNTROB Centrobin 1 VPEPPS(0.014)S(0.014)HS(0.149)QGS(0.375)GPS(0.149)S(0.149)GS(0.149)PERGGDGLT(0.001)FPR 58.319 0.001278 11995000 164.08 189.22 175.08 186.34 120.48 0 212.85 148.49 174.77 249.79 TRUE FALSE 166.3776262 209.8796795 130.8788886 174.3889864 136.8914157 0 253.2371763 135.8748477 191.5574394 198.8826609 0.836561747 1.055294004 0.658070885 0.87684359 0.688302415 0 1.273299418 0.683191019 0.963168124 1 7.635773693 -10.02259503 20.99803601 0.999999994 0.774682204 0.040487103 0.317288181 0 0 0.303677612 0.073652639 9.49E-11 10.02259503 -0.22531779 VPEPPSSHSQGSGPS(ph)SGSPERGGDGLTFPR ddPTM_K562_Paclitaxel_30min_R1 1 VPEPPSSHSQGSGPSSGSPERGGDGLTFPR 30 1 Q8N137-5;Q8N137;Q8N137-3;Q8N137-2;I3L0P9 Q8N137-5 CNTROB Centrobin 1 VPEPPS(0.004)S(0.004)HS(0.033)QGS(0.118)GPS(0.44)S(0.165)GS(0.233)PERGGDGLT(0.003)FPR 69.528 0.00021209 16443000 137.11 134.48 254.72 182.5 243.21 212.29 193.63 233.38 127.8 242 TRUE FALSE 139.029963 149.1629812 190.4127857 170.7952668 276.3393196 249.9366508 230.3702817 213.5529123 140.075761 192.6802672 0.721557869 0.774147677 0.988231896 0.886418051 1.434185885 1.297157485 1.195609105 1.108327881 0.726985503 1 7.590065019 -6.024153985 1.550881335 1.132950725 0.72780133 0.347677796 0.187888306 0.478841641 2.166844585 0.0617283 0.189666838 9.46E-07 6.024153985 -0.405149395 VPFS(ph)PGPAPPPHMGELDQER ddPTM_K562_Paclitaxel_30min_R1 2 VPFSPGPAPPPHMGELDQER 20 0 I1E4Y6;Q6Y7W6;Q6Y7W6-4;Q6Y7W6-5;E7ESB6;C9JHW1;Q6Y7W6-3 I1E4Y6;Q6Y7W6-3 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 VPFS(1)PGPAPPPHMGELDQER;VPFS(1)PGPAPPPHMGELDQER 152.9 2.18E-12 62044000 1391.92 1548.58 1840.24 1701.88 1316.6 1145.02 1561.52 1989.94 1123.4 2455.95 TRUE FALSE 1411.411174 1717.659201 1375.648652 1592.729034 1495.94321 1348.07322 1857.810268 1820.882176 1231.307589 1955.426042 0.721792154 0.878406631 0.703503289 0.814517655 0.765021626 0.689401282 0.950079537 0.931194603 0.62968763 1 10.93326726 -7.761363179 25 0.87200665 0.767244419 0.221939629 0.10558625 3.53903904 1161584.078 0.040895994 0.029629014 1.73E-08 7.761363179 -0.104762231 VPGEDGTLPPT(ph)QGSPLR ddPTM_K562_Paclitaxel_30min_R1 2 VPGEDGTLPPTQGSPLR 17 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 VPGEDGTLPPT(0.552)QGS(0.448)PLR;VPGEDGTLPPT(0.5)QGS(0.5)PLR 111.7 0.0018068 22837000 966.8 1223.02 1403.91 1098.82 953.99 1020.21 930.58 1397.27 1014.97 1110.31 TRUE FALSE 980.3381828 1356.55346 1049.475557 1028.346603 1083.939589 1201.129919 1107.152697 1278.563192 1112.462404 884.0282125 1.108944453 1.534513764 1.187151657 1.163250888 1.226136874 1.35870089 1.252395208 1.446292295 1.258401472 1 9.787948602 -9.040870623 22.55166871 0.999999996 1.289343772 0.318524023 0.124015499 2761.683064 1523845.143 0.116430995 0.030062354 9.10E-10 9.040870623 0.289343776 VPGEDGTLPPTQGS(ph)PLR ddPTM_K562_Paclitaxel_30min_R1 2 VPGEDGTLPPTQGSPLR 17 0 Q9Y2F5 Q9Y2F5 ICE1 Little elongation complex subunit 1 1 VPGEDGTLPPT(0.238)QGS(0.762)PLR;VPGEDGT(0.002)LPPT(0.199)QGS(0.799)PLR 91.401 0.0057253 60102000 821.02 536.44 941.51 811.51 580.38 583.8 704.78 680.08 529.32 656.59 TRUE FALSE 832.5168131 595.0103333 703.8141561 759.4633808 659.4375819 687.328733 838.5083258 622.3029591 580.1635511 522.7765976 1.592490591 1.138173239 1.346300043 1.452749385 1.261413738 1.314765688 1.603951534 1.190380292 1.109773379 1 9.030050749 -8.495597049 7.652182095 1.084767991 1.372972961 0.49274823 0.136905058 0.183850918 44.42364245 0.077413867 0.035014791 3.19E-09 8.495597049 0.28820497 VPKS(ph)PEHSAEPIR ddPTM_K562_Paclitaxel_30min_R1 2 VPKSPEHSAEPIR 13 1 Q9ULH0-2;Q9ULH0-4;Q9ULH0;Q9ULH0-5 Q9ULH0-2 KIDINS220 Kinase D-interacting substrate of 220 kDa 1 VPKS(0.998)PEHS(0.002)AEPIR;VPKS(0.991)PEHS(0.009)AEPIR 86.539 0.015206 264068000 4940.2 3726.8 8300.2 5050.5 4274.5 3854.8 3795.4 5879.7 4548.8 6710 TRUE FALSE 5009.378042 4133.704627 6204.711854 4726.583535 4856.759268 4538.394656 4515.557337 5380.182785 4985.732565 5342.498317 0.937647098 0.773739996 1.161387704 0.88471409 0.909080168 0.849489207 0.845214555 1.007053716 0.933221176 1 12.38329883 -8.282011627 24.60071031 0.977603083 0.910085748 0.101466294 0.097142231 1827.701583 2185588.873 0.053038826 0.025529657 5.22E-09 8.282011627 -0.067517336 VPLAPITDPQQLQLS(ph)PLK ddPTM_K562_Paclitaxel_30min_R1 2 VPLAPITDPQQLQLSPLK 18 0 A0A286YFD6;P31350;P31350-2 A0A286YFD6 RRM2 Ribonucleoside-diphosphate reductase subunit M2 1 VPLAPITDPQQLQLS(1)PLK;VPLAPITDPQQLQLS(1)PLK 140.89 1.21E-10 93293000 4513.4 3918.6 7231.6 5068.7 3582 3692.2 4189.6 7891.1 2355.66 9201.1 TRUE FALSE 4576.601525 4346.446 5405.893141 4743.616269 4069.929044 4346.959829 4984.554729 7220.7018 2581.931668 7325.910769 0.624714342 0.593297699 0.737914139 0.647512155 0.555552637 0.593367837 0.680400688 0.985638786 0.352438318 1 12.83879241 -12.2893723 2.426183725 2.761800629 0.65018217 0.337638666 0.15028866 20687028.89 2471713.002 200914958.9 0.037820814 5.14E-13 12.2893723 -2.111618459 VPLDLS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 VPLDLSPR 8 0 R4GNG2;Q9UKV5 R4GNG2 AMFR E3 ubiquitin-protein ligase AMFR 1 VPLDLS(1)PR 86.882 0.020474 21468000 2151.6 2031.6 2507.2 2378.1 1802.3 2027.6 1891.9 1980.4 1383.5 2139.2 TRUE FALSE 2181.729038 2253.416958 1874.226351 2225.57931 2047.803773 2387.166391 2250.878149 1812.152659 1516.391357 1703.229866 1.280936345 1.323025743 1.100395425 1.306681708 1.202306168 1.401552685 1.321535157 1.06395073 0.890303409 1 10.73405744 -8.437740231 3.800836743 0.950229234 1.273941028 0.743640035 0.080314253 0.118115713 3.137727293 0.052317104 0.021904961 3.65E-09 8.437740231 0.323711794 VPLS(ph)PLSLLAGPADARR ddPTM_K562_Paclitaxel_30min_R1 2 VPLSPLSLLAGPADARR 17 1 Q53ET0;H0YDQ8;Q5T4K5 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 1 VPLS(1)PLSLLAGPADARR;VPLS(1)PLSLLAGPADARR 186.17 7.09E-11 25975000 2711.5 2123.51 2964.7 2158.61 1966.83 2523.5 2152.9 2412.6 2418 2668.3 TRUE FALSE 2749.469366 2355.362003 2216.224818 2020.166416 2234.745545 2971.007293 2561.401536 2207.634571 2650.259704 2124.498995 1.29417306 1.108667035 1.043175272 0.950890737 1.051892964 1.398450788 1.205649681 1.03913185 1.24747515 1 11.05290695 VPLSNENSQVPQS(ph)PEDWR ddPTM_K562_Paclitaxel_30min_R1 2 VPLSNENSQVPQSPEDWR 18 0 Q8IZT6-2;Q8IZT6 Q8IZT6-2 ASPM Abnormal spindle-like microcephaly-associated protein 1 VPLSNENS(0.007)QVPQS(0.993)PEDWR;VPLSNENS(0.453)QVPQS(0.547)PEDWR 153.06 1.95E-09 34251000 195.81 470.11 259.52 382.94 250.1 267.24 0 67.124 126.2 441.79 TRUE FALSE 198.5519441 521.4381996 194.0009663 358.3799424 284.1678542 314.6312618 0 61.42139723 138.3220739 351.7529555 0.564464182 1.482398915 0.551526187 1.01883989 0.807862023 0.894466576 0 0.174615156 0.393236423 1 8.458418735 -7.738258704 24.29170482 0.323180951 0.900877607 0.323549631 0.344311658 162.7134545 170511.9322 0.123852185 0.095864193 1.83E-08 7.738258704 0.577696656 VPLSNENSQVPQS(ph)PEDWRK ddPTM_K562_Paclitaxel_30min_R1 1 VPLSNENSQVPQSPEDWRK 19 1 Q8IZT6-2;Q8IZT6 Q8IZT6-2 ASPM Abnormal spindle-like microcephaly-associated protein 1 VPLSNENSQVPQS(1)PEDWRK 98.002 0.0005779 25046000 758.04 652.88 1396.4 957.91 828.43 713.42 905.79 917.08 608.21 1300.7 TRUE FALSE 768.6548988 724.1636463 1043.86155 896.47394 941.2761914 839.9350201 1077.658924 839.1683298 666.6312881 1035.616626 0.742219543 0.699258421 1.007961367 0.865642669 0.908904094 0.811048219 1.040596391 0.810307896 0.643704699 1 10.01627432 -5.734736054 24.99811127 0.882178428 0.720738788 0.260405665 0.111267555 306.7180366 287127.2261 0.028139435 0.074405047 1.84E-06 5.734736054 -0.16143964 VPPELLGGS(ph)PPWK ddPTM_K562_Paclitaxel_30min_R1 1 VPPELLGGSPPWK 13 0 E7EVA0 E7EVA0 MAP4 Microtubule-associated protein 1 VPPELLGGS(1)PPWK 98.253 0.0093749 13030000 2230.3 1814.7 3029.8 2302.4 1789.6 1704.9 1855.7 2321.7 2079.4 2893.1 TRUE FALSE 2261.531081 2012.835083 2264.889518 2154.734369 2033.373818 2007.240077 2207.809388 2124.457093 2279.135661 2303.484632 0.98178692 0.873821798 0.983244901 0.935423809 0.882738174 0.871392867 0.958464996 0.92227969 0.989429506 1 11.16960226 -8.799033504 4.567165947 0.999019877 0.924206813 0.331122135 0.038966613 0.227775815 10.11817007 0.035660765 0.009825251 1.59E-09 8.799033504 -0.074813064 VPPPRS(ph)PQAQEAPVNIDEGLTGCTIQLLPAQDK ddPTM_K562_Paclitaxel_30min_R1 1 VPPPRSPQAQEAPVNIDEGLTGCTIQLLPAQDK 33 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 VPPPRS(1)PQAQEAPVNIDEGLTGCTIQLLPAQDK 85.525 6.06E-08 10845000 2208.2 1945.2 3789 2518.6 1969.8 1758.6 1569.8 2733.3 1515.6 3102 TRUE FALSE 2239.121613 2157.583514 2832.420088 2357.068269 2238.120109 2070.463018 1867.661355 2501.089104 1661.180152 2469.810697 0.906596451 0.873582545 1.146816674 0.954351794 0.906190953 0.838308385 0.756196156 1.012664293 0.67259412 1 11.27018475 -6.918904904 2.963267797 0.851648606 0.976348889 0.177142795 0.115845141 0.433886021 7.707706469 0.037577023 0.042900482 1.21E-07 6.918904904 0.124700283 VPS(ph)PGMEEAGCSR ddPTM_K562_Paclitaxel_30min_R1 2 VPSPGMEEAGCSR 13 0 Q96RL1-2;Q96RL1-3;Q96RL1;Q96RL1-4 Q96RL1-2 UIMC1 BRCA1-A complex subunit RAP80 1 VPS(1)PGMEEAGCSR;VPS(0.999)PGMEEAGCS(0.001)R 163.62 0.00065628 162534000 796.86 513.14 558.53 697.33 535.81 486.17 355.54 732.78 246.27 650.94 TRUE FALSE 808.0184985 569.1663605 417.5221937 652.6063749 608.7963933 572.3854233 423.001859 670.5257651 269.9253339 518.2780707 1.559044351 1.098187233 0.805594945 1.259181918 1.174652041 1.104398306 0.816167773 1.293756775 0.520811798 1 9.017582542 -5.281924527 4.074839986 1.016898724 1.595797927 0.357315872 0.223656694 0.22572045 7.999115044 0.053373795 0.369946642 5.22E-06 5.281924527 0.578899203 VPS(ph)PGPPTLTSYSVLR ddPTM_K562_Paclitaxel_30min_R1 1 VPSPGPPTLTSYSVLR 16 0 F8W130;Q12815;F8W1U0 F8W130 TROAP Tastin 1 VPS(1)PGPPTLTSYSVLR 168.47 6.94E-08 13499000 0 0 239.04 0 50.533 0 156.89 183.67 137.98 218.36 TRUE FALSE 0 0 178.6913956 0 57.41645013 0 186.6590585 168.0660871 151.2335955 173.8581121 0 0 1.027800161 0 0.330248899 0 1.073628697 0.966685333 0.869867926 1 7.441766574 -7.768606983 24.99953248 0.974769413 0.246917998 0.605130857 0.296997456 122.2580943 426413.1812 0.123771015 0.085408348 1.70E-08 7.768606983 -0.727851415 VPS(ph)S(ph)DEEVVEEPQSR ddPTM_K562_Paclitaxel_30min_R1 1 VPSSDEEVVEEPQSR 15 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 2 VPS(1)S(1)DEEVVEEPQSR 108.06 0.014246 16180000 1291 866.03 1502.2 1274.6 958.7 1082.8 969.65 1232.9 635.76 1663.1 TRUE FALSE 1309.077983 960.5860841 1122.951031 1192.852861 1089.291171 1274.819377 1153.636026 1128.157449 696.8275887 1324.159307 0.988610642 0.725430905 0.848048286 0.900837878 0.82262849 0.962738675 0.871221476 0.851980153 0.526241507 1 10.37086099 -8.555500609 24.99999725 0.738450721 0.869337126 0.099806903 0.126779556 348.0059019 266690.7731 0.07862512 0.029717958 2.78E-09 8.555500609 0.130886405 VPS(ph)WGLEDNVVCSQPAR ddPTM_K562_Paclitaxel_30min_R1 2 VPSWGLEDNVVCSQPAR 17 0 H7C3L5;B8ZZD4;Q86VP1-3;Q86VP1-4;Q86VP1-2;Q86VP1 H7C3L5 TAX1BP1 Tax1-binding protein 1 1 VPS(1)WGLEDNVVCSQPAR;VPS(1)WGLEDNVVCSQPAR 130.64 3.05E-07 51193000 561.29 717.62 666.28 626.12 676.24 586.79 648.93 721.24 588.74 548.15 TRUE FALSE 569.1497917 795.9721784 498.0693736 585.9634656 768.3553368 690.8489676 772.0610799 659.9661602 645.2911076 436.4367291 1.304083167 1.823797415 1.141217822 1.34260805 1.760519419 1.582930403 1.769010325 1.512169156 1.478544459 1 8.769628709 -9.344249562 2.519160031 1.000056989 1.536826457 0.362736838 0.209132855 3.032122601 20.7799045 0.203076417 0.054851095 4.53E-10 9.344249562 0.536769468 VPSAPGQES(ph)PIPDPK ddPTM_K562_Paclitaxel_30min_R1 2 VPSAPGQESPIPDPK 15 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 VPS(0.001)APGQES(0.999)PIPDPK;VPSAPGQES(1)PIPDPK 112.67 0.0017779 213710000 12894.8 10172.9 21695 13862.1 9525.1 8857.2 9135 13523.2 9950.9 16965.8 TRUE FALSE 13075.36698 11283.61162 16217.82893 12973.04695 10822.57988 10427.90006 10868.31856 12374.31975 10906.72841 13508.16065 0.967960578 0.83531814 1.200594911 0.960385895 0.801188272 0.771970391 0.804574275 0.916062525 0.80741773 1 13.72154362 -6.648518186 5.621762302 0.840387696 0.999224141 0.306616365 0.104159782 0.24655674 11.20779337 0.03104305 0.040185949 2.25E-07 6.648518186 0.158836445 VPSPLEGSEGDGDT(ph)D ddPTM_K562_Paclitaxel_30min_R1 1 VPSPLEGSEGDGDTD 15 0 F5H168;F5H1S9;Q9Y606-2;Q9Y606 F5H168 PUS1 "tRNA pseudouridine synthase;tRNA pseudouridine synthase A, mitochondrial" 1 VPSPLEGSEGDGDT(1)D 196.7 7.75E-09 12214000 1593.4 1532.7 2305.6 1472.2 1653.6 1369.4 1249.3 1738.8 1540.5 2007.6 TRUE FALSE 1615.712516 1700.045369 1723.522765 1377.779681 1878.848316 1612.243863 1486.348153 1591.078087 1688.471908 1598.450018 1.010799523 1.063558666 1.078246267 0.861947303 1.175418871 1.008629513 0.929868395 0.995388075 1.056318239 1 10.64245792 -7.513745573 24.98129359 0.991329291 1.037885621 0.062486593 0.078092311 1284.090747 3512299.356 0.028450325 0.023292956 3.06E-08 7.513745573 0.046556331 VPSS(ph)DEEVVEEPQSR ddPTM_K562_Paclitaxel_30min_R1 2 VPSSDEEVVEEPQSR 15 0 Q9C0C2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 VPS(0.005)S(0.995)DEEVVEEPQSR;VPS(0.079)S(0.921)DEEVVEEPQSR 235.35 5.30E-36 25715000 787.91 613.79 758.53 724.01 759.03 750.45 551.84 741.72 611.39 1128.1 TRUE FALSE 798.9431709 680.8056679 567.0297201 677.5752391 862.4227365 883.5317707 656.5487592 678.7062563 670.1167413 898.1926008 0.889500949 0.75797292 0.631300814 0.754376331 0.96017573 0.983677409 0.730966564 0.755635546 0.746072436 1 9.810881027 -5.235899723 21.82101673 0.805520811 0.889501531 0.032192652 0.118444176 5352.176244 4572472.385 0.031258931 1.649961542 5.81E-06 5.235899723 0.08398072 VPST(ph)PPPK ddPTM_K562_Paclitaxel_30min_R1 1 VPSTPPPK 8 0 Q9H7N4 Q9H7N4 SCAF1 "Splicing factor, arginine/serine-rich 19" 1 VPS(0.002)T(0.998)PPPK 112.11 0.018626 56544000 5133.4 4047.2 7656.1 5742.4 4148.6 3688.7 3635.6 5180 4027.6 5591 TRUE FALSE 5205.283438 4489.086983 5723.222866 5374.108166 4713.709556 4342.839153 4325.436121 4739.926667 4414.468976 4451.551131 1.169319027 1.008432084 1.285669354 1.207243949 1.058891478 0.975578854 0.971669423 1.064780911 0.991669835 1 12.12009241 -6.935888432 4.674734861 1.004016973 1.163832477 0.569233324 0.068416969 0.166391101 7.23770977 0.022668077 0.025650014 1.16E-07 6.935888432 0.159815504 VPVAS(ph)PSAHNISSSGGAPDR ddPTM_K562_Paclitaxel_30min_R1 3 VPVASPSAHNISSSGGAPDR 20 0 Q7KZI7-10;Q7KZI7-13;Q7KZI7-7;Q7KZI7-2;Q7KZI7-15;Q7KZI7-5;Q7KZI7-4;Q7KZI7-16;Q7KZI7-9;Q7KZI7;Q7KZI7-11;E9PC69;E7ETY4;Q7KZI7-8;Q7KZI7-14;Q7KZI7-6;Q7KZI7-3;Q7KZI7-12 Q7KZI7-10 MARK2 Serine/threonine-protein kinase MARK2 1 VPVAS(0.922)PS(0.078)AHNISSSGGAPDR;VPVAS(0.881)PS(0.119)AHNISSSGGAPDR;VPVAS(0.749)PS(0.246)AHNIS(0.001)S(0.001)S(0.002)GGAPDR 147.28 8.95E-13 65142000 2828.59 2637.12 3432.37 2993.02 2944.88 2269.15 2385.91 2889.55 2535.99 3373.27 TRUE FALSE 2868.198987 2925.04968 2565.825742 2801.061093 3346.022513 2671.551892 2838.623967 2644.064691 2779.583171 2685.795722 1.06791405 1.089081219 0.955331681 1.042916656 1.24582167 0.994696607 1.056902408 0.984462321 1.0349198 1 11.39113386 VPVLIS(ph)PTLK ddPTM_K562_Paclitaxel_30min_R1 2 VPVLISPTLK 10 0 P42684-4;P42684-7;P42684-10;P42684-5;P42684-2;P42684-6;P42684-3;P42684 P42684-4 ABL2 Abelson tyrosine-protein kinase 2 1 VPVLIS(0.799)PT(0.201)LK;VPVLIS(0.99)PT(0.01)LK 142.89 0.00071765 16866700 4908.3 4359.7 7936.6 5234 4395.4 3807.7 3232.5 5480.8 3184.3 6569.5 TRUE FALSE 4977.031343 4835.70679 5932.907171 4898.314667 4994.127895 4482.942132 3845.85 5015.17183 3490.166243 5230.632294 0.951516196 0.924497559 1.134261947 0.936467026 0.95478474 0.857055492 0.735255278 0.958807951 0.667255132 1 12.35276964 -7.16430345 2.363025774 0.832075502 0.991464113 0.300307492 0.105023545 0.356271512 3.899534797 0.037317921 0.036729349 6.85E-08 7.16430345 0.159388611 VQAYEEPS(ph)VASSPNGKESDLRR ddPTM_K562_Paclitaxel_30min_R1 1 VQAYEEPSVASSPNGKESDLRR 22 2 Q99575 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 1 VQAY(0.004)EEPS(0.482)VAS(0.482)S(0.014)PNGKES(0.019)DLRR 78.674 0.010825 38881000 364.88 206.82 473.43 350.75 300.84 259.14 355.72 227.61 352.34 487.84 TRUE FALSE 369.9894458 229.401307 353.9067412 328.2544649 341.8195013 305.0948405 423.216013 208.2731098 386.1838313 388.4179402 0.952554986 0.590604303 0.911149318 0.845106343 0.880030158 0.785480816 1.089589252 0.53620878 0.994248183 1 8.601466027 -14.99999928 0.258649711 2.049500867 0.821859351 0.081436324 0.161823535 501.4430628 4.940696345 279.5127205 0.205401938 1.00E-15 14.99999928 -1.227641516 VQAYEEPSVAS(ph)SPNGK ddPTM_K562_Paclitaxel_30min_R1 1 VQAYEEPSVASSPNGK 16 0 Q99575 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 1 VQAYEEPSVAS(0.986)S(0.014)PNGK 173.19 4.51E-09 76728000 6863.9 6272.8 11792 7907.8 6038.7 5203.4 6246.5 8822.9 4292.2 11102 TRUE FALSE 6960.015777 6957.685517 8814.963758 7400.629102 6861.273176 6126.149931 7431.740766 8073.339574 4704.484988 8839.406306 0.787384982 0.78712136 0.99723482 0.837231466 0.776214255 0.693049931 0.840751122 0.913335047 0.532217303 1 13.10973376 -6.64369679 5.351890471 0.786029767 0.860323887 0.047907971 0.129493192 0.639210763 27.38227591 0.037620528 0.048764897 2.27E-07 6.64369679 0.074294121 VQAYEEPSVAS(ph)SPNGKESDLR ddPTM_K562_Paclitaxel_30min_R1 1 VQAYEEPSVASSPNGKESDLR 21 1 Q99575 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 1 VQAYEEPS(0.028)VAS(0.783)S(0.189)PNGKES(0.001)DLR 89.392 0.0004262 160150000 3026.5 2603.3 5344.8 2874.3 2142.6 2155.8 2378.6 3375 3106.7 3507.2 TRUE FALSE 3068.880338 2887.537098 3995.439136 2689.955263 2434.458395 2538.100861 2829.926933 3088.272684 3405.112416 2792.430715 1.098999635 1.034058637 1.430810482 0.963302419 0.871806194 0.908921696 1.013427806 1.105944247 1.219408023 1 11.44730577 VQAYEEPSVASS(ph)PNGK ddPTM_K562_Paclitaxel_30min_R1 1 VQAYEEPSVASSPNGK 16 0 Q99575 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 1 VQAYEEPSVAS(0.214)S(0.786)PNGK 224.67 1.60E-30 75057000 4475.4 3615.5 7468.4 4869.5 3362 2870.2 3860.5 5468 2479.7 6322 TRUE FALSE 4538.069408 4010.252517 5582.910052 4557.192065 3819.961319 3379.18967 4593.009722 5003.45927 2717.886265 5033.57293 0.901560278 0.796700986 1.109134631 0.9053593 0.758896587 0.67133023 0.912475052 0.994017438 0.539951701 1 12.2973671 -6.618025707 6.521670373 0.811019174 0.93545505 0.126001937 0.150283528 0.456139847 26.32265146 0.044245516 0.057273983 2.41E-07 6.618025707 0.124435876 VQAYEEPSVASS(ph)PNGKESDLR ddPTM_K562_Paclitaxel_30min_R1 1 VQAYEEPSVASSPNGKESDLR 21 1 Q99575 Q99575 POP1 Ribonucleases P/MRP protein subunit POP1 1 VQAYEEPSVAS(0.374)S(0.626)PNGKESDLR 124.91 1.76E-07 151010000 1748.3 1643.3 2968.5 2051 1367.6 1202.9 1421.9 2136.5 1665.7 2809.2 TRUE FALSE 1772.781594 1822.721051 2219.065461 1919.45804 1553.890274 1416.217425 1691.698102 1954.990989 1825.697928 2236.683498 0.792593854 0.814921312 0.992123143 0.858171503 0.694729619 0.633177393 0.756342193 0.874057948 0.816252245 1 11.12714541 -9.419920534 1.323951879 0.999412788 0.79825838 0.290603214 0.09293096 2.537595335 6.284447836 0.101544403 0.030234493 3.80E-10 9.419920534 -0.201154407 VQDLIEGHLTAS(ph)Q ddPTM_K562_Paclitaxel_30min_R1 1 VQDLIEGHLTASQ 13 0 Q8WXD5 Q8WXD5 GEMIN6 Gem-associated protein 6 1 VQDLIEGHLT(0.079)AS(0.921)Q 91.845 0.01502 6099500 839.69 998.57 1755 1202.3 1004 980.59 1141.9 1270.3 1509.2 1569.9 TRUE FALSE 851.4482507 1107.59725 1311.928544 1125.189859 1140.761798 1154.483868 1358.569564 1162.380086 1654.165403 1249.953518 0.681183931 0.88611075 1.049581865 0.900185361 0.912643375 0.92362144 1.086896068 0.929938649 1.323381533 1 10.28765873 -3.802627354 0.32830338 1.075928826 1.55E-13 0.432811733 0.118635773 19.06379825 0.778036406 0.112904587 9.85028009 0.000157533 3.802627354 -1.075928826 VQDTS(ph)NTGLGEDIIHQLSK ddPTM_K562_Paclitaxel_30min_R1 4 VQDTSNTGLGEDIIHQLSK 19 0 Q8IWA0 Q8IWA0 WDR75 WD repeat-containing protein 75 1 VQDT(0.139)S(0.714)NT(0.147)GLGEDIIHQLSK;VQDT(0.214)S(0.653)NT(0.134)GLGEDIIHQLSK;VQDT(0.089)S(0.475)NT(0.436)GLGEDIIHQLSK;VQDT(0.111)S(0.58)NT(0.309)GLGEDIIHQLSK 178.79 5.70E-15 497755000 17310.7 15398 27387 18928.5 14537.8 13156.8 15452.7 22387.6 15072.6 26803.4 TRUE FALSE 17553.10321 17079.20571 20472.81313 17714.51073 16518.09449 15489.97375 18384.76916 20485.63364 16520.39058 21340.85237 0.822511815 0.800305696 0.959324997 0.830075127 0.774012875 0.725836695 0.861482421 0.959925747 0.774120466 1 14.38133018 -10.79615962 0.508824962 1.040869734 0.830732739 0.313639802 0.072807306 19.47116044 3.576197138 1.356977355 0.036935495 1.60E-11 10.79615962 -0.210136995 VQEHEDS(ph)GDS(ph)EVENEAK ddPTM_K562_Paclitaxel_30min_R1 2 VQEHEDSGDSEVENEAK 17 0 Q9Y5J1 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog 2 VQEHEDS(1)GDS(1)EVENEAK;VQEHEDS(1)GDS(1)EVENEAK 143.23 5.30E-08 197814000 6399.9 4854.4 10610.5 6969.1 5027.8 4656.9 4184.8 6037.5 6127.4 7993.3 TRUE FALSE 6489.518345 5384.419809 7931.748046 6522.133119 5712.671481 5482.735829 4978.843954 5524.57669 6715.964148 6364.261072 1.019681354 0.846040058 1.246295203 1.024806029 0.897617401 0.861488202 0.782312966 0.868062549 1.055262201 1 12.6357773 -6.750950644 6.288941108 0.89494955 1.036716957 0.210308179 0.114841639 0.227374028 35.05833439 0.035626703 0.043982728 1.77E-07 6.750950644 0.141767407 VQEHEDS(ph)GDSEVENEAK ddPTM_K562_Paclitaxel_30min_R1 2 VQEHEDSGDSEVENEAK 17 0 Q9Y5J1 Q9Y5J1 UTP18 U3 small nucleolar RNA-associated protein 18 homolog 1 VQEHEDS(1)GDSEVENEAK;VQEHEDS(0.999)GDS(0.001)EVENEAK 164.18 2.57E-08 108052000 5655.9 4699.1 13115.7 7719.6 5597.4 5414.5 3881 6028.2 4518 6689.5 TRUE FALSE 5735.10005 5212.163629 9804.479322 7224.499408 6359.860645 6374.685552 4617.39949 5516.066783 4951.974087 5326.176228 1.076776247 0.978593912 1.840810161 1.356413888 1.19407627 1.196859675 0.866925782 1.035652323 0.929742816 1 12.37888445 -7.47784783 2.116596968 0.961417101 1.313082579 0.329478623 0.220158528 0.405913123 3.624276112 0.101227367 0.080393484 3.33E-08 7.47784783 0.351665477 VQEKPDS(ph)PGGSTQIQR ddPTM_K562_Paclitaxel_30min_R1 2 VQEKPDSPGGSTQIQR 16 1 M0R300;M0R0P8;Q13459-2;Q13459 M0R300 MYO9B Unconventional myosin-IXb 1 VQEKPDS(0.519)PGGS(0.241)T(0.241)QIQR;VQEKPDS(0.998)PGGS(0.002)TQIQR 186.98 5.84E-10 83691000 8272.4 7800.8 15385.5 10072.7 7337.1 6953.8 6062.6 10296 8473.9 11446.9 TRUE FALSE 8388.239123 8652.517725 11501.24024 9426.682106 8336.537238 8186.958794 7212.946701 9421.290534 9287.855957 9114.015497 0.920367002 0.949363947 1.261928976 1.034306131 0.914694214 0.898282299 0.7914126 1.033714562 1.01907397 1 13.15387111 -6.706870594 6.403270906 0.934811414 1.051905667 0.163981243 0.1074862 0.353289735 30.46995932 0.03410706 0.043766766 1.96E-07 6.706870594 0.117094253 VQGGVPAGS(ph)DEYEDECPHLIALSSLNR ddPTM_K562_Paclitaxel_30min_R1 3 VQGGVPAGSDEYEDECPHLIALSSLNR 27 0 Q9BVS4-2;Q9BVS4;H0Y919;H0Y8R4 Q9BVS4-2 RIOK2 Serine/threonine-protein kinase RIO2 1 VQGGVPAGS(1)DEYEDECPHLIALSSLNR;VQGGVPAGS(0.981)DEY(0.019)EDECPHLIALSSLNR;VQGGVPAGS(0.998)DEY(0.002)EDECPHLIALSSLNR 136.63 7.41E-19 577810000 4957.6 4873.2 6455 5321.9 4161.2 3949.4 5195.5 6249.1 5577.5 6796.7 TRUE FALSE 5027.021696 5405.272456 4825.355416 4980.577154 4728.02589 4649.770638 6181.319003 5718.199949 6113.243796 5411.528809 0.928946675 0.998843884 0.89168063 0.920364158 0.873695042 0.859234202 1.142250041 1.056669964 1.129670378 1 12.40182051 -7.761269373 24.99999996 1.086870104 0.913767152 0.727577719 0.050928112 2.394649388 352216.9304 0.020476522 0.014845019 1.73E-08 7.761269373 -0.173102952 VQGGVPAGSDEY(ph)EDECPHLIALSSLNR ddPTM_K562_Paclitaxel_30min_R1 1 VQGGVPAGSDEYEDECPHLIALSSLNR 27 0 Q9BVS4-2;Q9BVS4;H0Y919;H0Y8R4 Q9BVS4-2 RIOK2 Serine/threonine-protein kinase RIO2 1 VQGGVPAGS(0.263)DEY(0.737)EDECPHLIALSSLNR 61.238 0.0073114 208180000 944.3 954.84 1311.6 937.79 917.41 957.4 891.54 1383.3 1111.2 1522.5 TRUE FALSE 957.5231134 1059.09266 980.4703583 877.6443468 1042.376774 1127.181447 1060.705061 1265.780031 1217.935725 1212.213664 0.789896321 0.873684806 0.808826354 0.724001364 0.859895252 0.929853771 0.875014935 1.044188882 1.00472034 1 10.24342829 -7.759192126 1.083151221 1.019888829 0.807071885 0.751073583 0.048929185 0.263342858 0.613108949 0.035759854 0.020332384 1.74E-08 7.759192126 -0.212816944 VQIPVSRPDPEPVS(ph)DNEEDSYDEEIHDPR ddPTM_K562_Paclitaxel_30min_R1 1 VQIPVSRPDPEPVSDNEEDSYDEEIHDPR 29 1 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2;H0YKB1 G3V1L9 TJP1 Tight junction protein ZO-1 1 VQIPVS(0.001)RPDPEPVS(0.388)DNEEDS(0.326)Y(0.285)DEEIHDPR 53.525 0.0047901 151490000 706.55 508.07 966.27 774.46 596.47 730.25 777.42 748.98 757.19 805.63 TRUE FALSE 716.4438799 563.5428008 722.3231878 724.789602 677.7193123 859.7495843 924.9313866 685.349474 829.9214827 641.4421638 1.116926701 0.878555905 1.126092466 1.129937573 1.056555603 1.340338432 1.441956015 1.068450926 1.29383681 1 9.325175379 -7.242052653 23.8895695 1.246509587 1.058821671 0.26760043 0.136811843 581.2179563 716213.8619 0.044898278 0.04482095 5.73E-08 7.242052653 -0.187687916 VQIPVSRPDPEPVSDNEEDS(ph)YDEEIHDPR ddPTM_K562_Paclitaxel_30min_R1 1 VQIPVSRPDPEPVSDNEEDSYDEEIHDPR 29 1 G3V1L9;Q07157;A0A087X0K9;G5E9E7;Q07157-2;H0YKB1 G3V1L9 TJP1 Tight junction protein ZO-1 1 VQIPVSRPDPEPVS(0.077)DNEEDS(0.576)Y(0.347)DEEIHDPR 76.133 5.08E-05 161400000 907.68 963.3 1243.9 1066.5 1149.1 1016.2 899.44 1073.3 870.81 1330.2 TRUE FALSE 920.3903204 1068.476352 929.8620606 998.0994635 1305.626874 1196.408802 1070.104045 982.1164657 954.4551914 1059.10451 0.869026911 1.008848836 0.87797007 0.942399408 1.232764909 1.129641873 1.010385693 0.92730836 0.901190754 1 10.04862924 -2.519153629 20.84758124 0.995220266 0.18016416 0 0.109932338 0 0 0.0274513 0 0.003025843 2.519153629 -0.815056106 VQIS(ph)PDSGGLPER ddPTM_K562_Paclitaxel_30min_R1 5 VQISPDSGGLPER 13 0 M0QXW7;M0QYH3;A0A087WTP3;Q92945 M0QXW7 KHSRP Far upstream element-binding protein 2 1 VQIS(0.834)PDS(0.166)GGLPER;VQIS(0.953)PDS(0.047)GGLPER;VQIS(0.641)PDS(0.359)GGLPER;VQIS(0.5)PDS(0.5)GGLPER;VQIS(0.5)PDS(0.5)GGLPER 155.57 8.17E-05 405604000 10278 9486 13569.9 11147.6 9449.8 10067.3 9450.2 10610.1 9301.3 11844.1 TRUE FALSE 10421.92371 10521.71356 10144.01091 10432.64283 10737.02275 11852.5943 11243.32612 9708.705779 10194.73142 9430.265919 1.105156928 1.115738798 1.075686625 1.1062936 1.138570517 1.256867453 1.192259711 1.029526194 1.081065106 1 13.20308274 -11.64583261 6.950492249 0.999571417 1.124071697 0.26993225 0.060305335 0.000446341 2.27E-05 0.065072792 0.015728877 2.26E-12 11.64583261 0.12450028 VQISPDS(ph)GGLPER ddPTM_K562_Paclitaxel_30min_R1 1 VQISPDSGGLPER 13 0 M0QXW7;M0QYH3;A0A087WTP3;Q92945 M0QXW7 KHSRP Far upstream element-binding protein 2 1 VQIS(0.305)PDS(0.695)GGLPER 147.51 0.00013245 244350000 2663.9 2566.5 3164.3 3181.9 2049.5 2351.9 2486.6 3023.3 2570.5 3167.8 TRUE FALSE 2701.202819 2846.719149 2365.433329 2977.827176 2328.676598 2768.976443 2958.419369 2766.451794 2817.40801 2522.200621 1.070970642 1.128664836 0.937845035 1.180646437 0.923271757 1.097841472 1.172951646 1.096840501 1.11704358 1 11.30046732 -7.497682436 24.99090905 1.10915294 1.049623286 0.071675759 0.082781596 1700.029144 1686175.404 0.027602355 0.02424648 3.18E-08 7.497682436 -0.059529654 VQMT(ph)SPSSTGSPMFK ddPTM_K562_Paclitaxel_30min_R1 1 VQMTSPSSTGSPMFK 15 0 P49790-2;P49790;P49790-3 P49790-2 NUP153 Nuclear pore complex protein Nup153 1 VQMT(0.891)S(0.053)PS(0.009)S(0.016)T(0.029)GS(0.001)PMFK 101.36 0.011247 54220000 4166 3618.2 6867.3 3893.1 3349.7 3156.1 2624.6 4180.6 3719.8 5567.7 TRUE FALSE 4224.336853 4013.247312 5133.565181 3643.413991 3805.985851 3715.790021 3122.604149 3825.431936 4077.103411 4432.999684 0.952929654 0.905311888 1.158034186 0.821884559 0.858557664 0.838211208 0.704399813 0.862944329 0.919716603 1 12.11406754 -6.318398906 24.99718817 0.845052248 0.995414864 0.337351102 0.093177992 292.8702488 128527.9387 0.025976157 0.038528883 4.80E-07 6.318398906 0.150362616 VQMTSPSSTGS(ph)PMFK ddPTM_K562_Paclitaxel_30min_R1 1 VQMTSPSSTGSPMFK 15 0 P49790-2;P49790;P49790-3 P49790-2 NUP153 Nuclear pore complex protein Nup153 1 VQMTS(0.001)PS(0.199)S(0.059)T(0.059)GS(0.683)PMFK 99.796 0.0053862 8597600 783.65 455.31 1366.6 773.81 737.44 586.51 688.44 999.98 643.6 1062.1 TRUE FALSE 794.6235178 505.0222856 1021.584928 724.18129 837.891813 690.5193135 819.0678961 915.0254573 705.4206557 845.643437 0.939667339 0.59720476 1.208056355 0.856367185 0.99083346 0.816560838 0.968573586 1.082046424 0.834182144 1 9.723905673 -5.747769982 24.99988242 0.963722945 0.768436211 0.259039639 0.13578552 306.0495964 559722.9149 0.03226548 0.084379366 1.79E-06 5.747769982 -0.195286734 VQPQWS(ph)PPAGTQPCR ddPTM_K562_Paclitaxel_30min_R1 4 VQPQWSPPAGTQPCR 15 0 B4DKY1;P49589-2;P49589;P49589-3;C9JLN0;E9PRS8;E9PLP0 B4DKY1 CARS "Cysteine--tRNA ligase, cytoplasmic" 1 VQPQWS(0.995)PPAGT(0.005)QPCR;VQPQWS(1)PPAGTQPCR;VQPQWS(0.999)PPAGT(0.001)QPCR;VQPQWS(0.999)PPAGT(0.001)QPCR 163.34 3.68E-05 179333800 6721.1 5460.83 7818.6 6433.5 5967.5 5830.7 5698.8 6658.4 6217.6 6990.2 TRUE FALSE 6815.216136 6057.061887 5844.697731 6020.884105 6780.374531 6864.692778 6780.11755 6092.72736 6814.828261 5565.593403 1.224526415 1.088304777 1.050148171 1.081804521 1.218266237 1.233416148 1.218220064 1.094712984 1.224456723 1 12.4423198 -3.579730311 11.23496786 1.146845584 1.217922882 0 0.084283259 0 0 0.019562153 0 0.00026319 3.579730311 0.071077298 VQQSSESSTS(ph)SPSQHEATPGAR ddPTM_K562_Paclitaxel_30min_R1 3 VQQSSESSTSSPSQHEATPGAR 22 0 E9PBY7;E9PQ61;O75152;A0A1B0GTU1;A0A494C0C4 E9PBY7 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 VQQSSESST(0.002)S(0.799)S(0.191)PS(0.007)QHEATPGAR;VQQSSESS(0.003)T(0.01)S(0.581)S(0.397)PS(0.008)QHEATPGAR;VQQSSES(0.001)S(0.002)T(0.005)S(0.627)S(0.364)PS(0.001)QHEATPGAR 90.37 0.00032732 97500000 1587.02 1648.43 2301.8 1833.88 1856.29 1717.88 1612.92 1799.7 1734.8 2057.35 TRUE FALSE 1609.243176 1828.411162 1720.682122 1716.263145 2109.148125 2022.521898 1918.96315 1646.804252 1901.435291 1638.060941 0.982407392 1.116204603 1.050438405 1.047740717 1.287588314 1.234704917 1.17148459 1.005337598 1.16078422 1 10.67777332 -3.686920259 15.61296148 1.113434977 0.638435378 0 0.100329573 0 0 0.023918441 0 0.000205627 3.686920259 -0.474999599 VQQSSESSTSS(ph)PSQHEATPGAR ddPTM_K562_Paclitaxel_30min_R1 1 VQQSSESSTSSPSQHEATPGAR 22 0 E9PBY7;E9PQ61;O75152;A0A1B0GTU1;A0A494C0C4 E9PBY7 ZC3H11A Zinc finger CCCH domain-containing protein 11A 1 VQQSSESST(0.001)S(0.252)S(0.744)PS(0.003)QHEATPGAR 156.31 5.27E-18 2217700 213.48 238.69 460.8 288.1 317.5 334.58 174.86 270.41 196.58 261.59 TRUE FALSE 216.4693786 264.7509814 344.4653409 269.6225555 360.7488753 393.9130653 208.0387722 247.4369827 215.4623873 208.2778144 1.039329989 1.271143459 1.653874379 1.294533248 1.732056179 1.891286724 0.998852291 1.188014112 1.034495143 1 7.702365363 -7.801779301 24.99999175 1.071007749 1.48174066 0.435625313 0.236730588 166.8685611 103412.5036 0.105519456 0.071142168 1.58E-08 7.801779301 0.410732911 VQRPPS(ph)AASAAPSSSK ddPTM_K562_Paclitaxel_30min_R1 1 VQRPPSAASAAPSSSK 16 1 Q5SRE5-2;Q5SRE5 Q5SRE5-2 NUP188 Nucleoporin NUP188 homolog 1 VQRPPS(0.995)AAS(0.005)AAPSSSK 72.927 0.024577 12785000 1667.6 1387.9 2607.2 1741.5 1392.1 1455.2 1302.5 1996.6 1452 2801.7 TRUE FALSE 1690.951545 1539.435616 1948.980115 1629.807985 1581.727588 1713.259288 1549.642575 1826.976368 1591.471088 2230.712002 0.758032208 0.690109532 0.873703155 0.730622323 0.709068489 0.768032488 0.694685183 0.819010417 0.713436376 1 11.12328855 -11.94438535 2.609824819 1.177805645 0.751627414 0.647092733 0.055218659 7763664.755 4214026.121 8389570.032 0.013548274 1.14E-12 11.94438535 -0.426178231 VQS(ph)LPSVPLSCAAYR ddPTM_K562_Paclitaxel_30min_R1 2 VQSLPSVPLSCAAYR 15 0 Q96AD5-2;Q96AD5 Q96AD5-2 PNPLA2 Patatin-like phospholipase domain-containing protein 2 1 VQS(0.494)LPS(0.494)VPLS(0.012)CAAYR;VQS(0.972)LPS(0.028)VPLSCAAYR 142.54 3.57E-06 53692000 3394.1 3134.7 4290.1 3520.4 3162.2 2571.47 4068.7 4459.9 3392 5528.7 TRUE FALSE 3441.627872 3476.957147 3207.011196 3294.617301 3592.945176 3027.484099 4840.714585 4081.003657 3717.816756 4401.947905 0.781842027 0.789867854 0.72854365 0.748445318 0.816217105 0.687760093 1.099675573 0.927090403 0.844584451 1 12.10392636 -7.749828579 24.99998595 0.961761826 0.760959178 0.693384503 0.068048373 128.1415005 275910.3128 0.026065213 0.020017066 1.78E-08 7.749828579 -0.200802647 VQS(ph)PEPPAPER ddPTM_K562_Paclitaxel_30min_R1 2 VQSPEPPAPER 11 0 A0A0G2JMS7;A0A0G2JNZ2;A0A0G2JPP5;A0A669KB89;Q14160-2;Q14160;Q14160-3;H0YCG0 A0A0G2JMS7 SCRIB Protein scribble homolog 1 VQS(1)PEPPAPER;VQS(1)PEPPAPER 149.82 0.00042226 39258000 3854.7 3703.9 5302 3891.6 3085.5 2923.2 2999.1 4093.4 3364.3 3879.1 TRUE FALSE 3908.677693 4108.304328 3963.444526 3642.010194 3505.797338 3441.588476 3568.163569 3745.64012 3687.456047 3088.537291 1.265543306 1.330177991 1.283275594 1.179202273 1.135099566 1.114310158 1.155292371 1.212755349 1.193916634 1 11.59270803 -2 0.084569355 0.904059774 1.990124903 0.652691627 0.052928738 127.1653519 0.780890371 1.417071774 16.07122008 0.01 2 1.086065129 VQSGMGLILQGY(ph)ES(ph)GSEEEGEIHEK ddPTM_K562_Paclitaxel_30min_R1 1 VQSGMGLILQGYESGSEEEGEIHEK 25 0 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 VQSGMGLILQGY(0.732)ES(0.952)GS(0.316)EEEGEIHEK 94.087 0.00018032 17925000 2206.7 1630.7 3620.2 2242.6 1746.5 1657 1642.3 2299.1 2474.5 3069.3 TRUE FALSE 2237.600608 1808.745341 2706.235736 2098.769674 1984.402868 1950.845685 1953.917852 2103.777104 2712.186781 2443.774975 0.915632835 0.740143982 1.107399725 0.858822803 0.812023565 0.798291866 0.799549006 0.860871858 1.109834911 1 11.25489573 -8.751181279 24.99436964 1.054917449 0.859814568 0.387529929 0.097195713 184.4674912 449471.799 0.06783597 0.025005663 1.77E-09 8.751181279 -0.195102881 VQSGMGLILQGYES(ph)GS(ph)EEEGEIHEK ddPTM_K562_Paclitaxel_30min_R1 1 VQSGMGLILQGYESGSEEEGEIHEK 25 0 Q13523 Q13523 PRPF4B Serine/threonine-protein kinase PRP4 homolog 2 VQSGMGLILQGY(0.142)ES(0.929)GS(0.929)EEEGEIHEK 94.955 0.00013941 22351000 3273.8 2734 5291.8 3602.1 2426.9 2580.7 2314 3228.1 3270.8 4440.2 TRUE FALSE 3319.643301 3032.507366 3955.819642 3371.077428 2757.484868 3038.35091 2753.06942 2953.852756 3584.974954 3535.284803 0.939003075 0.857783046 1.118953596 0.953551868 0.779989455 0.859435966 0.77874049 0.835534595 1.014055488 1 11.78761073 -6.578615879 11.9291412 0.864046798 0.973107139 0.165710808 0.09586293 1.141045121 241.256732 0.028369916 0.036630345 2.64E-07 6.578615879 0.10906034 VQT(ph)TPPPAVQGQK ddPTM_K562_Paclitaxel_30min_R1 1 VQTTPPPAVQGQK 13 0 E9PG46;Q2M2I8-2;Q2M2I8 E9PG46 AAK1 AP2-associated protein kinase 1 1 VQT(0.946)T(0.054)PPPAVQGQK 97.86 0.022948 15955000 3207.3 2944.5 5951.7 3899.1 2885.3 2281.7 2481.4 3619.8 3047.7 4909 TRUE FALSE 3252.212095 3265.990468 4449.119725 3649.029178 3278.326709 2686.327458 2952.232696 3312.275396 3340.445202 3908.543105 0.832077838 0.835603032 1.138306424 0.933603412 0.838759256 0.687296362 0.755328166 0.847445021 0.854652261 1 11.93241523 -6.801980795 4.709853268 0.810253111 0.942994177 0.167164446 0.109417544 0.304378703 15.09462268 0.035350315 0.041679659 1.58E-07 6.801980795 0.132741065 VQTT(ph)PPPAVQGQK ddPTM_K562_Paclitaxel_30min_R1 1 VQTTPPPAVQGQK 13 0 E9PG46;Q2M2I8-2;Q2M2I8 E9PG46 AAK1 AP2-associated protein kinase 1 1 VQT(0.263)T(0.737)PPPAVQGQK 121.56 0.0036054 13550000 7354.5 6171.1 12739 8449.8 6026.6 5655.3 5593.8 8091.3 7752.4 9139.3 TRUE FALSE 7457.485691 6844.881567 9522.881896 7907.867648 6847.524951 6658.188051 6655.194348 7403.893561 8497.052659 7276.705643 1.024843666 0.940656652 1.308680379 1.086737328 0.941019918 0.915000328 0.914588919 1.017478777 1.167705975 1 12.82906974 -6.705098105 8.74832117 0.985795612 1.095591456 0.156824818 0.109938435 0.560903734 79.99218522 0.034433262 0.044375106 1.97E-07 6.705098105 0.109795845 VQTT(ph)PSKPGGDR ddPTM_K562_Paclitaxel_30min_R1 2 VQTTPSKPGGDR 12 1 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 VQT(0.019)T(0.901)PS(0.081)KPGGDR;VQT(0.019)T(0.816)PS(0.165)KPGGDR 170.95 0.00045851 48105000 10245.1 8109.3 17176.1 10992.4 9242 7544.2 7907.1 11770.3 7943.2 14014.2 TRUE FALSE 10388.56301 8994.700798 12839.78112 10287.39666 10500.91687 8882.057944 9407.430947 10770.33955 8706.179851 11158.09835 0.931033469 0.806114135 1.150714102 0.921966839 0.941102735 0.796018969 0.843103426 0.965248666 0.780256598 1 13.44580355 -7.034846687 21.79137155 0.872186402 0.953086545 0.115963555 0.101097776 279.6799615 174896.5952 0.03288133 0.032912728 9.23E-08 7.034846687 0.080900143 VQTTPS(ph)KPGGDR ddPTM_K562_Paclitaxel_30min_R1 1 VQTTPSKPGGDR 12 1 Q12834 Q12834 CDC20 Cell division cycle protein 20 homolog 1 VQT(0.013)T(0.013)PS(0.974)KPGGDR 74.962 0.031035 16549000 4114.9 3036.7 6373.8 4288.1 3108.7 3284.7 3160.2 4465.9 2763.1 5458.9 TRUE FALSE 4172.521296 3368.257175 4764.65536 4013.080459 3532.157571 3867.195426 3759.831453 4086.49392 3028.508101 4346.373184 0.960000699 0.774958116 1.09623706 0.923317048 0.812667809 0.889752274 0.865050306 0.940207789 0.696789708 1 12.08559634 -6.549269531 19.75866044 0.86565402 0.94067479 0.103667147 0.103704396 49.30742596 36914.05991 0.029475772 0.038059397 2.82E-07 6.549269531 0.07502077 VREEEIEVDSR ddPTM_K562_Paclitaxel_30min_R1 3 VREEEIEVDSR 11 1 A0A0A0MRM9;Q14978;Q14978-3;Q14978-2 A0A0A0MRM9 NOLC1 Nucleolar and coiled-body phosphoprotein 1 0 ;; 160.72 1.77E-06 80134000 11178.1 9520.7 13058.1 11852.1 10212.1 8988 8601.4 11829.7 10427.1 12331.5 FALSE TRUE 11334.62789 10560.20222 9761.421154 11091.95935 11603.16091 10581.8956 10233.47075 10824.69315 11428.66954 9818.333531 1.154435002 1.075559533 0.994203459 1.129719144 1.181785165 1.077769009 1.042281841 1.102498007 1.164013171 1 13.26126246 -12.49152516 2.042146436 2.31E-05 1.099135566 0.235821527 0.055045628 683754.7399 105890.5465 3170830.105 0.014553294 3.22E-13 12.49152516 1.099112447 VRGGAPDPS(ph)PGATATPGAPAQPS(ph)SPDAR ddPTM_K562_Paclitaxel_30min_R1 1 VRGGAPDPSPGATATPGAPAQPSSPDAR 28 1 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 2 VRGGAPDPS(0.995)PGAT(0.004)AT(0.001)PGAPAQPS(0.546)S(0.454)PDAR 115.91 6.06E-12 20393000 1129.1 1172.4 1669.6 1073.3 1115.3 970.51 752.8 1471.8 1041.2 1438.5 TRUE FALSE 1144.910884 1300.406597 1248.088831 1004.463342 1267.222742 1142.616322 895.6398701 1346.761403 1141.211912 1145.33291 0.999631525 1.135396167 1.089717076 0.87700557 1.106423059 0.997628123 0.781990862 1.175868947 0.996401921 1 10.16155129 VRGGAPDPSPGATATPGAPAQPS(ph)SPDAR ddPTM_K562_Paclitaxel_30min_R1 4 VRGGAPDPSPGATATPGAPAQPSSPDAR 28 1 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 VRGGAPDPSPGATATPGAPAQPS(0.5)S(0.5)PDAR;VRGGAPDPSPGATATPGAPAQPS(0.5)S(0.5)PDAR;VRGGAPDPSPGATATPGAPAQPS(0.5)S(0.5)PDAR;VRGGAPDPSPGATATPGAPAQPS(0.5)S(0.5)PDAR 181.81 4.66E-41 538011000 9673.7 8417.8 11087.2 10527.4 8211.2 8372.4 8144.1 10609.4 8850 12353.7 TRUE FALSE 9809.161646 9336.883871 8288.099235 9852.219683 9329.704457 9857.127586 9689.40046 9708.065248 9700.082043 9836.009159 0.997270487 0.949255305 0.842628255 1.001648079 0.948525393 1.002147052 0.985094697 0.986992294 0.986180664 1 13.26385736 VRGGAPDPSPGATATPGAPAQPS(ph)SPDARR ddPTM_K562_Paclitaxel_30min_R1 4 VRGGAPDPSPGATATPGAPAQPSSPDARR 29 2 O95365 O95365 ZBTB7A Zinc finger and BTB domain-containing protein 7A 1 VRGGAPDPSPGATATPGAPAQPS(0.5)S(0.5)PDARR;VRGGAPDPSPGATATPGAPAQPS(0.5)S(0.5)PDARR;VRGGAPDPSPGATATPGAPAQPS(0.5)S(0.5)PDARR;VRGGAPDPSPGATATPGAPAQPS(0.5)S(0.5)PDARR 202.44 1.85E-45 236936000 14764.8 13860.5 18238.3 15907.8 13500.2 13389.1 13178.2 16312 17398.7 18803.5 TRUE FALSE 14971.55275 15373.83626 13633.8156 14887.54491 15339.1558 15763.46889 15678.69466 14926.19378 19069.92287 14971.33638 1.000014453 1.0268847 0.91066123 0.994403207 1.024568242 1.05290994 1.047247504 0.996984732 1.273762234 1 13.86991539 -7.638253125 0.928119431 1.099824104 0.982916252 0.252493296 0.076653281 0.805725207 1.401762911 0.053879905 0.034530251 2.30E-08 7.638253125 -0.116907852 VRGPVS(ph)GSPDSMNASR ddPTM_K562_Paclitaxel_30min_R1 1 VRGPVSGSPDSMNASR 16 1 A0A499FJS7;O14920-4;O14920-2;O14920 A0A499FJS7 IKBKB Inhibitor of nuclear factor kappa-B kinase subunit beta 1 VRGPVS(0.471)GS(0.157)PDS(0.035)MNAS(0.337)R 97.214 0.01427 14847000 1345.9 1531.7 2018.9 1648 1569.2 1511.4 1250 1664.5 1643.3 1920.8 TRUE FALSE 1364.746752 1698.936186 1509.203726 1542.304656 1782.951607 1779.425569 1487.180975 1523.090336 1801.146307 1529.339906 0.892376343 1.110895086 0.986833417 1.008477351 1.165830827 1.163525232 0.97243325 0.995913551 1.177727921 1 10.57869338 -5.251127711 23.82919696 1.06368511 0.892376156 0.30245535 0.078464072 1008.48237 2330408.566 0.019972822 0.26057102 5.61E-06 5.251127711 -0.171308954 VRGPVSGS(ph)PDSMNASR ddPTM_K562_Paclitaxel_30min_R1 3 VRGPVSGSPDSMNASR 16 1 A0A499FJS7;O14920-4;O14920-2;O14920 A0A499FJS7 IKBKB Inhibitor of nuclear factor kappa-B kinase subunit beta 1 VRGPVS(0.099)GS(0.898)PDS(0.003)MNASR;VRGPVS(0.208)GS(0.788)PDS(0.004)MNASR;VRGPVS(0.14)GS(0.827)PDS(0.028)MNAS(0.006)R 214.63 2.18E-22 46377500 5693.3 4505 6730.4 5651.8 4375.4 4581.1 4116.5 5884.3 5469 6000.2 TRUE FALSE 5773.023765 4996.871135 5031.227279 5289.318845 4971.403556 5393.493763 4897.584385 5384.391986 5994.321886 4777.355946 1.208413991 1.045949096 1.053140552 1.107164487 1.040618202 1.128970465 1.025166314 1.127065273 1.254736292 1 12.22199666 -8.510817931 24.91618275 1.148545672 1.08415513 0.039619614 0.07688766 1153.580991 2383188.429 0.042355813 0.01854661 3.08E-09 8.510817931 -0.064390543 VRHDS(ph)PDPS(ph)PPR ddPTM_K562_Paclitaxel_30min_R1 1 VRHDSPDPSPPR 12 1 Q9BRD0 Q9BRD0 BUD13 BUD13 homolog 2 VRHDS(1)PDPS(1)PPR 84.94 0.025769 5715300 3745.8 3943.9 5284.7 4162.1 3383.3 3492.7 3521.3 4157.6 3717.6 4865.7 TRUE FALSE 3798.252757 4374.508339 3950.512125 3895.161535 3844.16274 4112.081305 4189.448293 3804.385929 4074.692091 3874.067669 0.980430153 1.12917706 1.019732349 1.005444888 0.992280742 1.061437656 1.081408135 0.982013288 1.051786504 1 11.91963344 -7.954970596 0.003784153 2.54E-05 2.059691769 0.021691296 0.046108694 40866.27783 113.4297534 30738.73974 30993.06412 1.11E-08 7.954970596 2.059666395 VRHFS(ph)QSEETGNEVFGALNEEQPLPR ddPTM_K562_Paclitaxel_30min_R1 1 VRHFSQSEETGNEVFGALNEEQPLPR 26 1 A0A1B0GUI1;Q6GYQ0-3;Q6GYQ0-4;Q6GYQ0;Q6GYQ0-7;Q6GYQ0-5;Q6GYQ0-6;Q6GYQ0-2 A0A1B0GUI1 RALGAPA1 Ral GTPase-activating protein subunit alpha-1 1 VRHFS(0.549)QS(0.409)EET(0.042)GNEVFGALNEEQPLPR 50.237 0.014798 22172000 234.51 337.87 204.82 166.69 219.54 358.63 300.88 339.83 369.27 383.66 TRUE FALSE 237.7938635 374.7597892 153.1106578 155.9992495 249.4450648 422.2279951 357.9704093 310.9593203 404.7400334 305.4698814 0.778452731 1.226830572 0.501229965 0.510686189 0.81659463 1.382224634 1.171868099 1.017970475 1.324975253 1 8.254886331 -7.14699099 6.45328835 1.178796985 0.758152726 0.477116283 0.216533231 0.233325834 11.68307899 0.075460293 0.075579059 7.13E-08 7.14699099 -0.420644259 VRPAS(ph)TGGLSLLPPPPGGK ddPTM_K562_Paclitaxel_30min_R1 1 VRPASTGGLSLLPPPPGGK 19 1 D6RB24;Q9NVZ3-4;Q9NVZ3;Q9NVZ3-2 D6RB24 NECAP2 Adaptin ear-binding coat-associated protein 2 1 VRPAS(0.737)T(0.261)GGLS(0.002)LLPPPPGGK 99.873 0.00062245 8025600 2307.1 2052.1 4004.3 2526.9 1970.9 2246.7 1592.7 2485.3 2156.7 3584.9 TRUE FALSE 2339.406518 2276.155218 2993.36494 2364.835944 2239.369948 2645.1207 1894.906511 2274.158252 2363.860671 2854.295412 0.819609108 0.797449069 1.048722892 0.828518286 0.78456138 0.926715815 0.663878904 0.796749433 0.828176601 1 11.47891894 -6.491887645 24.87484387 0.818212233 0.889336109 0.045640378 0.10442229 1645.711533 1320921.717 0.028952532 0.042885319 3.22E-07 6.491887645 0.071123877 VRPSSDLNNSTGQS(ph)PHHK ddPTM_K562_Paclitaxel_30min_R1 4 VRPSSDLNNSTGQSPHHK 18 1 J3KNR0;P27448-8;P27448-3;P27448-4;P27448-2;P27448 J3KNR0 MARK3 MAP/microtubule affinity-regulating kinase 3 1 VRPSSDLNNSTGQS(1)PHHK;VRPSSDLNNSTGQS(1)PHHK;VRPSSDLNNSTGQS(1)PHHK;VRPSSDLNNSTGQS(1)PHHK 117.03 0.00012526 102735000 8468.9 7171.5 14076.7 9877.6 8702 7347.6 7026 10949.8 6849.9 13368.4 TRUE FALSE 8587.490729 7954.508622 10522.86299 9244.094947 9887.359726 8650.593695 8359.146822 10019.54614 7507.863501 10643.91274 0.806798302 0.747329372 0.988627325 0.86848654 0.928921532 0.812726852 0.785345298 0.9413405 0.705366878 1 13.37774097 -12.4982588 2.276474552 3.07274755 0.847870744 0.232209577 0.085317436 9520375.392 1317378.456 100515822.1 0.022054898 3.17E-13 12.4982588 -2.224876806 VRS(ph)PDEALPGGLSGCSSGSGHSPYALER ddPTM_K562_Paclitaxel_30min_R1 2 VRSPDEALPGGLSGCSSGSGHSPYALER 28 1 Q5JSZ5-5 Q5JSZ5-5 PRRC2B Protein PRRC2B 1 VRS(1)PDEALPGGLSGCSSGSGHSPYALER;VRS(1)PDEALPGGLSGCSSGSGHSPYALER 122.59 1.58E-14 97718000 918.3 982.26 1506.98 1104.74 1026.58 818.38 834.08 1293.99 972.12 1189.42 TRUE FALSE 931.1590332 1089.506469 1126.524261 1033.886921 1166.417576 963.5082024 992.3423258 1184.057473 1065.49647 947.0155511 0.983256328 1.150463123 1.189552019 1.091731725 1.23167732 1.017415396 1.047862756 1.250304149 1.125109792 1 9.887244306 -10.71341384 4.112725003 0.999999381 1.12473895 0.155494703 0.084023891 14864994.5 33660333.1 153.2631934 0.020511269 1.93E-11 10.71341384 0.124739569 VRSTRS(ph)SPSPGMVY(ph) ddPTM_K562_Paclitaxel_30min_R1 1 VRSTRSSPSPGMVY 14 2 Q9NXN4-2 Q9NXN4-2 2 VRS(0.058)T(0.023)RS(0.454)S(0.455)PS(0.046)PGMVY(0.964) 52.725 0.029903 0 0 0 0 0 0 0 151.3 0 0 0 TRUE FALSE 0 0 0 0 0 0 180.0083852 0 0 0 0 VRTEGKESS(ph)S(ph)AS(ph)RS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 VRTEGKESSSASRSR 15 3 F8W9Z1;J3KP11;Q15878-2;Q15878-3;Q15878 F8W9Z1 CACNA1E Voltage-dependent R-type calcium channel subunit alpha-1E 4 VRT(0.001)EGKES(0.454)S(0.547)S(0.998)AS(1)RS(1)R;VRTEGKES(0.46)S(0.595)S(0.971)AS(0.997)RS(0.978)R 96.489 0.0042809 5872600 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 VRYDS(ph)SNQVK ddPTM_K562_Paclitaxel_30min_R1 2 VRYDSSNQVK 10 1 O95983-2;O95983;A0A087WZ12;A0A087WT34;A0A087X1H1;A0A0A0MTS6;K7EIE8 O95983-2 MBD3 Methyl-CpG-binding domain protein 3 1 VRYDS(0.783)S(0.217)NQVK;VRYDS(0.789)S(0.211)NQVK 110.98 0.0059279 211563000 5831.5 6113.8 10168.8 6999.7 5069.6 5036.2 4785.1 7164.4 6505.1 8743.4 TRUE FALSE 5913.158992 6781.32536 7601.560674 6550.770571 5760.165349 5929.299358 5693.047745 6555.739501 7129.943921 6961.490281 0.849409933 0.974119777 1.09194445 0.94100118 0.827432793 0.851728455 0.817791524 0.941714954 1.024197928 1 12.76518047 -2.000180669 17.13730576 0.927882115 6.92E-05 0 0.088353167 0 0 0.021908225 0 0.009995841 2.000180669 -0.927812959 VS(ph)DFGGR ddPTM_K562_Paclitaxel_30min_R1 1 VSDFGGR 7 0 I3L4R8;P27694 I3L4R8 RPA1 "Replication protein A 70 kDa DNA-binding subunit;Replication protein A 70 kDa DNA-binding subunit, N-terminally processed" 1 VS(1)DFGGR 93.178 0.016589 7483500 881.33 984.13 1234.2 1202.8 941.21 998.27 820.05 940.4 828.22 1209.5 TRUE FALSE 893.6713391 1091.580642 922.6109456 1125.657792 1069.418737 1175.299168 975.6502066 860.5071502 907.7742316 963.0032361 0.928004503 1.133517106 0.958055914 1.168903436 1.110503783 1.22045194 1.013132843 0.893566208 0.942649202 1 9.911396836 -7.998739481 24.9997155 0.941534511 1.090119801 0.350074218 0.086564897 43.27021836 858159.0208 0.036231492 0.024210132 1.00E-08 7.998739481 0.14858529 VS(ph)DSPSHIATK ddPTM_K562_Paclitaxel_30min_R1 1 VSDSPSHIATK 11 0 Q9P2D3 Q9P2D3 HEATR5B HEAT repeat-containing protein 5B 1 VS(0.917)DS(0.082)PS(0.001)HIATK 112.08 0.0036588 19155000 5589 4519.5 9614.1 5876.3 5252.6 4042.1 3979.8 6054.1 5299.9 6849.9 TRUE FALSE 5667.263244 5012.954294 7186.901549 5499.420419 5968.093047 4758.909681 4734.946274 5539.766416 5808.979076 5453.88662 1.039123773 0.919152642 1.317757785 1.008348872 1.094282566 0.87257217 0.868178348 1.015746531 1.065108148 1 12.41306899 -7.237590523 24.62767814 0.959296272 1.076736468 0.203175672 0.110084746 1087.857585 1123383.839 0.037253555 0.037232716 5.79E-08 7.237590523 0.117440197 VS(ph)FFLPR ddPTM_K562_Paclitaxel_30min_R1 2 VSFFLPR 7 0 Q13107-3 Q13107-3 1 VS(1)FFLPR;VS(1)FFLPR 106.76 0.0064762 20936000 604.96 580.16 576.38 531.27 690.76 522.31 467.03 579.66 437.48 674.25 TRUE FALSE 613.4313065 643.5038308 430.8657404 497.1967201 784.8532067 614.9343449 555.6465044 530.4142649 479.5019087 536.8374799 1.142676004 1.198693934 0.802599961 0.926158733 1.46199406 1.145475806 1.03503672 0.988035085 0.893197526 1 9.068341588 -8.126453713 2.763100076 0.95206135 1.108800914 0.147067621 0.164267801 0.624563837 9.140612857 0.100242709 0.051376822 7.47E-09 8.126453713 0.156739564 VS(ph)GRTSPPLLDR ddPTM_K562_Paclitaxel_30min_R1 3 VSGRTSPPLLDR 12 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 VS(0.759)GRT(0.153)S(0.088)PPLLDR;VS(0.778)GRT(0.055)S(0.167)PPLLDR;VS(0.81)GRT(0.061)S(0.129)PPLLDR 95.428 0.0091008 4659900000 11103.3 10936.8 14915.1 12584.8 9738 9697 9382.5 11755.2 12305 12052.4 TRUE FALSE 11258.78046 12130.91681 11149.59854 11777.66726 11064.48047 11416.6268 11162.7804 10756.52239 13486.95023 9596.114264 1.173264526 1.26414885 1.161886804 1.227337121 1.153016748 1.189713511 1.163260471 1.120924792 1.405459529 1 13.22823462 -11.13931389 4.622287244 0.9999788 1.20168604 0.392971465 0.076802293 1.58E-05 2.94E-06 0.069943677 0.016962051 7.26E-12 11.13931389 0.20170724 VS(ph)GS(ph)WLEEQDEDIY(ph)EVES(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 VSGSWLEEQDEDIYEVESR 19 0 A0A2R8Y590 A0A2R8Y590 4 VS(1)GS(1)WLEEQDEDIY(1)EVES(1)R 49.266 0.023807 56536000 0 125.32 64.963 65.165 64.419 0 0 134.58 112.68 127.03 TRUE FALSE 0 139.0028614 48.5622872 60.98560857 73.19395842 0 0 123.146589 123.5034175 101.1412163 0 1.374344372 0.480143397 0.602974839 0.723680821 0 0 1.217570774 1.221098797 1 6.660227223 -8.28834679 24.82284808 1.164501299 0.489406666 0.383138285 0.40032734 794.6022497 733038.1989 0.224870793 0.108071596 5.15E-09 8.28834679 -0.675094632 VS(ph)GSY(ph)LFQSKVMMAL ddPTM_K562_Paclitaxel_30min_R1 1 VSGSYLFQSKVMMAL 15 1 A0A087WWQ2 A0A087WWQ2 2 VS(0.651)GS(0.651)Y(0.696)LFQS(0.002)KVMMAL 50.053 0.028862 16663000 902.22 1004.3 1164.4 1151.8 1136.2 1300.9 840.46 1053.9 1099.7 1069 TRUE FALSE 914.8538636 1113.95287 870.4328189 1077.928703 1290.969676 1531.596349 999.9328975 964.3646168 1205.331099 851.1372132 1.074860609 1.308781772 1.022670382 1.266457025 1.516758586 1.79947055 1.174819855 1.133030729 1.416141933 1 9.73324792 -5.261150338 21.5021694 1.307112497 1.074860429 0.072891501 0.228679299 9.835345398 728666.285 0.06002509 0.339347738 5.48E-06 5.261150338 -0.232252068 VS(ph)LERLDLDLTADSQPPVFK ddPTM_K562_Paclitaxel_30min_R1 1 VSLERLDLDLTADSQPPVFK 20 1 Q13263;Q13263-2;M0R0K9 Q13263 TRIM28 Transcription intermediary factor 1-beta 1 VS(0.998)LERLDLDLT(0.002)ADSQPPVFK 62.735 0.018246 8708800 2067.8 1718.8 3518.9 2313.5 1816.6 1378.2 1729.7 2736 1582.8 3796.6 TRUE FALSE 2096.75558 1906.464397 2630.510174 2165.122465 2064.051675 1622.604419 2057.901545 2503.559722 1734.835012 3022.850836 0.693635146 0.630684245 0.870208395 0.716251837 0.682816251 0.536779519 0.680781705 0.828211466 0.57390692 1 11.56169407 -11.36712075 5.314167496 1.000132718 0.693692937 0.481023673 0.096430004 0.000153607 1.83E-05 0.094586373 0.022930691 4.29E-12 11.36712075 -0.306439781 VS(ph)LLLY(ph)DS(ph)T(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 VSLLLYDSTR 10 0 A0A1B0GTI8-2;A0A1B0GTI8 A0A1B0GTI8-2 4 VS(1)LLLY(1)DS(1)T(1)R 45.825 0.030823 7108900 2402.9 2153.8 2611.4 2487.1 2493.3 2772 2784.2 2750.2 2308.5 2721.2 TRUE FALSE 2436.548014 2388.959168 1952.119773 2327.588538 2832.929672 3263.575279 3312.487416 2516.553344 2530.24174 2166.617946 1.124585909 1.102621333 0.900998617 1.07429579 1.307535404 1.506299385 1.528874724 1.161512277 1.16783014 1 11.08122906 -6.737477831 5.334751254 1.311487923 1.040583084 0.316933424 0.160016456 0.200362716 15.55249691 0.050861335 0.063691503 1.83E-07 6.737477831 -0.27090484 VS(ph)PGQAAPAMARPR ddPTM_K562_Paclitaxel_30min_R1 2 VSPGQAAPAMARPR 14 1 Q96HA7-2;Q96HA7 Q96HA7-2 TONSL Tonsoku-like protein 1 VS(1)PGQAAPAMARPR;VS(1)PGQAAPAMARPR 116 0.0014999 95342000 1049.19 1003.87 1109.96 1199.75 814.13 992.43 947.02 1224.66 931.65 1347.91 TRUE FALSE 1063.881897 1113.475921 829.7368702 1122.803405 925.0282893 1168.423526 1126.712101 1120.617489 1021.139145 1073.205202 0.991312654 1.037523783 0.773139068 1.046215023 0.861930493 1.088723316 1.0498571 1.044178212 0.95148546 1 10.06771024 -7.271300063 24.99318497 1.03104797 0.943735606 0.207030958 0.082767078 1104.489612 2799464.141 0.028229036 0.025202489 5.35E-08 7.271300063 -0.087312364 VS(ph)PSPTTYR ddPTM_K562_Paclitaxel_30min_R1 1 VSPSPTTYR 9 0 P11274-2;P11274 P11274-2 BCR Breakpoint cluster region protein 1 VS(0.736)PS(0.195)PT(0.035)T(0.035)YR 87.806 0.020474 14714000 2118.3 1804.3 2986 2209.8 1820 2237.9 1767.8 2334.9 1604.9 3034.2 TRUE FALSE 2147.962736 2001.299576 2232.14737 2068.073319 2067.914813 2634.760143 2103.230821 2136.535671 1759.057816 2415.828374 0.889120584 0.828411321 0.923967693 0.856051423 0.855985812 1.090623892 0.870604404 0.884390503 0.728138569 1 11.23830225 -5.766527233 24.96719832 0.899533673 0.858765955 0.033213943 0.091257005 502.3147219 2465013.054 0.024029668 0.052569694 1.71E-06 5.766527233 -0.040767719 VS(ph)SLAGFTDCHR ddPTM_K562_Paclitaxel_30min_R1 1 VSSLAGFTDCHR 12 0 H0YLN8;Q96QT4 H0YLN8 TRPM7 Transient receptor potential cation channel subfamily M member 7 1 VS(0.818)S(0.182)LAGFTDCHR 101.72 0.006645 15198000 2845.4 2481.6 2999.8 2620.9 2064.4 2366.1 2136.3 2412.2 3351.1 3266.3 TRUE FALSE 2885.244379 2752.54948 2242.463389 2452.807205 2345.606231 2785.694613 2541.651773 2207.268554 3672.988128 2600.626267 1.109442143 1.058417934 0.86227822 0.943160206 0.901938991 1.071162992 0.977322964 0.848745005 1.412347547 1 11.34464337 -8.748477515 24.99998762 1.206173911 0.971056229 0.363506266 0.124180058 203.2339602 391989.0765 0.081333428 0.030321985 1.78E-09 8.748477515 -0.235117682 VS(ph)SPLASFLQQQR ddPTM_K562_Paclitaxel_30min_R1 1 VSSPLASFLQQQR 13 0 E9PPH6;Q8NEV8-2;Q8NEV8 E9PPH6 EXPH5 Exophilin-5 1 VS(0.575)S(0.417)PLAS(0.008)FLQQQR 93.243 0.013729 8821700 1133.3 1233 1197.1 1030.2 975.22 871.87 1022.6 1303.7 987.7 1467.4 TRUE FALSE 1149.169697 1367.62311 894.8772995 964.127583 1108.061475 1026.483903 1216.633012 1192.942548 1082.572998 1168.343075 0.983589257 1.170566368 0.765937094 0.825209311 0.948404196 0.878580894 1.041331984 1.021055008 0.926588279 1 10.19024826 -7.765191803 24.99891128 0.998998396 0.928499016 0.093511636 0.104468935 273.5645446 1822474.878 0.045659247 0.032131478 1.72E-08 7.765191803 -0.07049938 VS(ph)SRSHTEEDCTEELFDFLHAR ddPTM_K562_Paclitaxel_30min_R1 1 VSSRSHTEEDCTEELFDFLHAR 22 1 P07919 P07919 UQCRH "Cytochrome b-c1 complex subunit 6, mitochondrial" 1 VS(0.612)S(0.128)RS(0.128)HT(0.128)EEDCT(0.002)EELFDFLHAR 63.488 0.0079987 4424400 475.59 420.51 657.91 444.02 473.78 300.59 376.33 252.64 506.46 453.39 TRUE FALSE 482.2497273 466.4227039 491.8124836 415.5425446 538.3168572 353.895416 447.7366529 231.1766551 555.1077459 360.9888691 1.335913012 1.29206949 1.362403458 1.151122874 1.49122841 0.980349939 1.24030598 0.640398292 1.537742001 1 8.495810543 -7.274301662 24.68921526 1.067318302 1.316878203 0.229679987 0.225056071 960.1020265 1842915.271 0.073214106 0.064983362 5.32E-08 7.274301662 0.249559901 VS(ph)VGAPDLSLEASEGSIK ddPTM_K562_Paclitaxel_30min_R1 1 VSVGAPDLSLEASEGSIK 18 0 Q09666 Q09666 AHNAK Neuroblast differentiation-associated protein AHNAK 1 VS(1)VGAPDLSLEASEGSIK 75.316 0.010801 13455000 3554.1 3515.4 4538.4 3891.2 3227.5 4365.4 4108.5 2537.4 2100.4 3105.9 TRUE FALSE 3603.868365 3899.22326 3392.62479 3641.635848 3667.140142 5139.542397 4888.066427 2321.832032 2302.152805 2472.915875 1.45733561 1.576771495 1.371912738 1.47260806 1.482921509 2.07833289 1.976640805 0.938904576 0.930946672 1 11.27199745 -8.281176704 24.47783147 0.951194019 1.624312146 0.670023226 0.216809961 436.6886474 541568.6432 0.133718655 0.064385737 5.23E-09 8.281176704 0.673118127 VS(ph)Y(ph)RSQTYQNY(ph)KNFNSRR ddPTM_K562_Paclitaxel_30min_R1 1 VSYRSQTYQNYKNFNSRR 18 3 Q01082-3;Q01082-2 Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 3 VS(0.498)Y(0.463)RS(0.303)QT(0.317)Y(0.42)QNY(0.987)KNFNS(0.011)RR 46.786 0.027731 9559200 585.95 904.15 943.65 1020.5 710.89 601.79 543.01 990.24 812.87 739.16 TRUE FALSE 594.1551078 1002.868155 705.4138866 955.0496976 807.7252535 708.5090069 646.0433128 906.1129311 890.9497955 588.5187863 1.009577131 1.704054617 1.198625945 1.622802398 1.372471487 1.203885115 1.097744588 1.539649969 1.513885056 1 9.200944658 -7.015584871 23.57472179 1.293291386 1.406445877 0.043192846 0.240349957 1215.663879 1838895.86 0.07602994 0.078480684 9.65E-08 7.015584871 0.113154491 VSALEEDMDDVES(ph)S(ph)EEEEEEDEKLER ddPTM_K562_Paclitaxel_30min_R1 2 VSALEEDMDDVESSEEEEEEDEKLER 26 1 Q8NAV1 Q8NAV1 PRPF38A Pre-mRNA-splicing factor 38A 2 VSALEEDMDDVES(1)S(1)EEEEEEDEKLER;VSALEEDMDDVES(1)S(1)EEEEEEDEKLER 82.146 8.61E-05 56219000 2529.9 2160.45 5098.8 3277 2250.28 2217.65 1889.8 2677.8 1831.11 4261.9 TRUE FALSE 2565.326405 2396.335237 3811.544879 3066.827887 2556.806234 2610.91909 2248.379685 2450.304176 2006.996297 3393.322441 0.755992527 0.706191433 1.123248658 0.903783222 0.753481662 0.769428528 0.66258946 0.722095886 0.591454638 1 11.72848281 -6.837165765 5.24079227 0.730448575 0.87811509 0.142849414 0.142686322 0.35813471 17.45785216 0.045288724 0.052177436 1.45E-07 6.837165765 0.147666516 VSCHDS(ph)DDDIMR ddPTM_K562_Paclitaxel_30min_R1 4 VSCHDSDDDIMR 12 0 F5GWN9;F8WE42;F5H101;Q76FK4-2;Q76FK4-4;Q76FK4 F5GWN9 NOL8 Nucleolar protein 8 1 VSCHDS(1)DDDIMR;VSCHDS(1)DDDIMR;VSCHDS(1)DDDIMR;VSCHDS(1)DDDIMR 162.48 3.26E-32 52262000 3767.21 4014.95 5223.6 4997.4 4157.96 3484.89 3713.87 4556.98 2713.52 5705.5 TRUE FALSE 3819.962563 4453.315819 3904.837575 4676.889132 4724.344547 4102.886311 4418.557445 4169.836105 2974.16572 4542.715968 0.840898394 0.98032011 0.859582154 1.029535891 1.039982376 0.903179142 0.972668658 0.917916976 0.654710913 1 12.14933939 -11.00222794 4.728073971 1.000000777 0.920575563 0.052625126 0.106525023 156887262 1.643531331 2599.478368 0.025767525 9.95E-12 11.00222794 -0.079425213 VSDEQS(ph)DSPS(ph)GSES(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 VSDEQSDSPSGSESK 15 0 K7EJ76;A0A2R8Y461;Q9C0F0-2;Q9C0F0 K7EJ76 ASXL3 Putative Polycomb group protein ASXL3 3 VSDEQS(0.999)DS(0.375)PS(0.631)GS(0.392)ES(0.603)K 84.62 0.019956 63465000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 VSDSESEGPQKGPAS(ph)DSETEDASR ddPTM_K562_Paclitaxel_30min_R1 1 VSDSESEGPQKGPASDSETEDASR 24 1 Q96ST2;Q96ST2-3 Q96ST2 IWS1 Protein IWS1 homolog 1 VSDSESEGPQKGPAS(0.846)DS(0.105)ET(0.045)EDAS(0.004)R 54.047 0.016822 5877300 925.12 1034.4 1480.5 1162 758.18 898.65 540.85 1070.5 896.94 1043.5 TRUE FALSE 938.0745342 1147.33929 1106.729464 1087.474521 861.4569521 1058.01296 643.4734641 979.5543431 983.0950946 830.8341272 1.129075592 1.380948679 1.332070299 1.308894863 1.036857929 1.273434643 0.774490892 1.179001092 1.183262775 1 9.698416667 -6.756616033 24.99074453 1.078403422 1.297570562 0.356588299 0.140017664 133.3233581 690770.9383 0.041247871 0.051538496 1.75E-07 6.756616033 0.21916714 VSEPLLSATSAS(ph)PTQVVSQLPMGR ddPTM_K562_Paclitaxel_30min_R1 1 VSEPLLSATSASPTQVVSQLPMGR 24 0 E7ER32;A0A087X287;A0A494BZX7;W0Z7M9;A0A499FIJ6;Q969V6 E7ER32 MKL1;mkl1 MKL/myocardin-like protein 1 1 VSEPLLSAT(0.007)S(0.056)AS(0.934)PT(0.004)QVVSQLPMGR 91.249 1.41E-05 0 538.08 529.2 367.88 554.95 413.96 380.31 448.35 602.34 591.61 500.41 TRUE FALSE 545.6147801 586.9798456 275.0041441 519.3579909 470.3483604 447.7526387 533.422072 551.1674573 648.4367839 398.4261673 1.369425065 1.473246222 0.690226111 1.303523798 1.180515737 1.123803293 1.338822888 1.383361592 1.627495474 1 8.638168592 -7.874619367 5.484311412 1.375305401 1.185448934 0.074769235 0.241764479 0.481850924 21.24514004 0.102540529 0.068610496 1.33E-08 7.874619367 -0.189856467 VSGEEELHTGPPAPQGPLSVPQGLPTQSLAS(ph)PPAR ddPTM_K562_Paclitaxel_30min_R1 2 VSGEEELHTGPPAPQGPLSVPQGLPTQSLASPPAR 35 0 Q9UPN7 Q9UPN7 PPP6R1 Serine/threonine-protein phosphatase 6 regulatory subunit 1 1 VSGEEELHTGPPAPQGPLS(0.007)VPQGLPT(0.041)QS(0.1)LAS(0.851)PPAR;VSGEEELHTGPPAPQGPLSVPQGLPT(0.011)QS(0.011)LAS(0.978)PPAR 133.71 3.41E-26 81588000 1312.06 1519.42 1596.08 1728.33 1328.41 1134.8 1347.04 1852.92 895.47 1912.54 TRUE FALSE 1330.432888 1685.315414 1193.129864 1617.48265 1509.361932 1336.040847 1602.633808 1695.50288 981.4838946 1522.763298 0.87369645 1.106748118 0.783529433 1.062202282 0.991199311 0.877379201 1.052451034 1.113438236 0.644541339 1 10.57247599 -8.751099327 24.99999761 0.822270589 0.981848033 0.195154796 0.13021573 281.4840015 680578.281 0.084133532 0.031023499 1.77E-09 8.751099327 0.159577444 VSGRTS(ph)PPLLDR ddPTM_K562_Paclitaxel_30min_R1 1 VSGRTSPPLLDR 12 1 Q9UQ35 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 VS(0.257)GRT(0.151)S(0.592)PPLLDR 76.311 0.028921 4235500000 3384.8 3429.5 4586.7 3724.8 3386.4 2799.5 3345.7 3862.9 3940 4498.8 TRUE FALSE 3432.197643 3803.944408 3428.730857 3485.908 3847.685012 3295.952018 3980.529109 3534.722534 4318.454604 3581.942091 0.958194621 1.061978198 0.95722677 0.973189379 1.07418962 0.920157818 1.11127679 0.986817331 1.205618208 1 11.8065263 -7.780095967 24.99513646 1.074829525 0.995517851 0.251146157 0.071709735 364.8682597 488826.8491 0.027913296 0.018855022 1.66E-08 7.780095967 -0.079311674 VSGS(ph)PEQAVEENLSSYSLDRR ddPTM_K562_Paclitaxel_30min_R1 2 VSGSPEQAVEENLSSYSLDRR 21 1 A0A494BZT8;Q9Y6A5;E7EMT0;C9JA91 A0A494BZT8 TACC3 Transforming acidic coiled-coil-containing protein 3 1 VS(0.202)GS(0.798)PEQAVEENLSSYSLDRR;VS(0.054)GS(0.946)PEQAVEENLSSYSLDRR 111.88 4.26E-05 554650000 1390.65 1298.02 1888.19 1653.51 1018.97 1422.81 1046.73 1336.12 1170.45 1776.09 TRUE FALSE 1410.123391 1439.742213 1411.493082 1547.461269 1157.770965 1675.125376 1245.341553 1222.608266 1282.876952 1414.121883 0.997172455 1.018117484 0.998141036 1.094291297 0.818720776 1.184569305 0.880646547 0.864570643 0.907189803 1 10.46569076 VSGTLDTPEKT(ph)VDSQGPTPVCTPTFLER ddPTM_K562_Paclitaxel_30min_R1 1 VSGTLDTPEKTVDSQGPTPVCTPTFLER 28 1 H7BZL0;Q9BYG3;C9J808 H7BZL0 NIFK MKI67 FHA domain-interacting nucleolar phosphoprotein 1 VSGT(0.015)LDT(0.192)PEKT(0.785)VDS(0.008)QGPTPVCTPTFLER 93.176 9.47E-06 34464000 1168.1 1124.9 1737.6 1398.6 976.5 941.24 629.63 1074.7 1246.3 1412.8 TRUE FALSE 1184.457004 1247.720386 1298.92139 1308.900056 1109.515832 1108.155698 749.0990056 983.3975269 1366.012684 1124.870584 1.0529718 1.109212387 1.154729626 1.163600572 0.986349761 0.985140614 0.66594239 0.874231703 1.214373193 1 10.13554331 -6.962638133 2.990978241 0.924536976 1.121403996 0.269862404 0.130975096 0.331554871 6.072758254 0.046026742 0.051196137 1.09E-07 6.962638133 0.196867021 VSIGNITLS(ph)PAISR ddPTM_K562_Paclitaxel_30min_R1 1 VSIGNITLSPAISR 14 0 Q0JRZ9-3;Q0JRZ9 Q0JRZ9-3 FCHO2 F-BAR domain only protein 2 1 VSIGNIT(0.004)LS(0.991)PAIS(0.004)R 127.2 0.00031259 18843000 910.22 855.77 1223.5 927.25 787.61 831.69 1143.3 1603.4 930.82 1387.7 TRUE FALSE 922.9658883 949.2058626 914.6122929 867.7803352 894.8958163 979.178544 1360.235207 1467.181162 1020.22942 1104.885978 0.835349445 0.859098478 0.82778885 0.785402614 0.809944043 0.886225876 1.231109122 1.32790278 0.923379824 1 10.10968178 -7.659950814 5.318611004 1.146696309 0.826373627 0.630292355 0.107424809 0.123994124 5.419360754 0.041296182 0.031505753 2.19E-08 7.659950814 -0.320322683 VSLEPHQGPGT(ph)PESK ddPTM_K562_Paclitaxel_30min_R1 4 VSLEPHQGPGTPESK 15 0 A0A087WY61;Q14980-5;Q14980-2;Q14980;H0YFY6 A0A087WY61 NUMA1 Nuclear mitotic apparatus protein 1 1 VSLEPHQGPGT(0.974)PES(0.026)K;VSLEPHQGPGT(0.998)PES(0.002)K;VSLEPHQGPGT(0.998)PES(0.002)K;VSLEPHQGPGT(0.963)PES(0.037)K 128.82 0.00022445 377429500 5922.5 5508.62 11597.4 6916 5526.92 5139.69 4368.66 6750 5413.2 8488.2 TRUE FALSE 6005.433272 6110.069761 8669.492935 6472.438715 6279.780076 6051.141857 5197.590429 6176.545368 5933.162047 6758.300181 0.888601144 0.904083808 1.28279193 0.957702165 0.929195198 0.89536447 0.769067708 0.913919951 0.877907445 1 12.72244472 -6.753126721 3.043673376 0.882962708 1.025032579 0.191118767 0.114181849 0.388026861 7.411351641 0.037615418 0.04714353 1.77E-07 6.753126721 0.142069871 VSLLGPVT(ph)TPEHQLLK ddPTM_K562_Paclitaxel_30min_R1 1 VSLLGPVTTPEHQLLK 16 0 Q9H0H5 Q9H0H5 RACGAP1 Rac GTPase-activating protein 1 1 VSLLGPVT(0.682)T(0.318)PEHQLLK 97.797 0.010734 9771200 1394.4 1283 2577.5 1814.1 1124 1081.4 1216.1 1854.6 1086.6 1954.3 TRUE FALSE 1413.925902 1423.082279 1926.778247 1697.751746 1277.107829 1273.171106 1446.848627 1697.040154 1190.972785 1556.012587 0.908685388 0.914569902 1.238279345 1.091091267 0.820756747 0.81822674 0.92984378 1.09063395 0.765400482 1 10.60363802 -6.75176813 24.9994431 0.905664474 1.043623362 0.219004203 0.123787499 333.6018353 862330.8993 0.038598235 0.049191087 1.77E-07 6.75176813 0.137958888 VSLPS(ph)SPVPASPASSSGADQRLPSQSLSSK ddPTM_K562_Paclitaxel_30min_R1 1 VSLPSSPVPASPASSSGADQRLPSQSLSSK 30 1 Q5T6S3-2 Q5T6S3-2 1 VS(0.013)LPS(0.535)S(0.376)PVPAS(0.05)PAS(0.009)S(0.009)S(0.009)GADQRLPSQSLSSK 47.734 0.011775 18614000 1068.3 967.7 1687.2 1414.1 980.07 832.26 777.19 802.03 1435.1 1333.1 TRUE FALSE 1083.259496 1073.356759 1261.245493 1323.405955 1113.572127 979.8496255 924.6577453 733.8925454 1572.947767 1061.413488 1.020581996 1.011252232 1.188269705 1.246833557 1.049140735 0.92315543 0.871156958 0.691429451 1.481936856 1 10.05177107 -7.00257899 24.75200135 0.968773246 1.118519295 0.071963492 0.19881376 213.7791187 2051792.062 0.061686008 0.068746971 9.94E-08 7.00257899 0.14974605 VSLPSS(ph)PVPASPASSSGADQR ddPTM_K562_Paclitaxel_30min_R1 2 VSLPSSPVPASPASSSGADQR 21 0 Q5T6S3-2 Q5T6S3-2 1 VSLPS(0.036)S(0.964)PVPASPASSSGADQR;VSLPS(0.029)S(0.936)PVPAS(0.035)PASSSGADQR 194.67 3.10E-24 126303000 3622.5 3471.6 5040.7 3917.6 3447.7 3057.7 3061.3 3730.5 2427.28 3917.9 TRUE FALSE 3673.226176 3850.641028 3768.112942 3666.342671 3917.33511 3599.940163 3642.165694 3413.57074 2660.431089 3119.429829 1.177531272 1.234405401 1.207949256 1.175324617 1.255785616 1.154037872 1.16757417 1.094293165 0.852858129 1 11.60706664 -8.529758913 3.037513676 0.928041408 1.1974154 0.840643834 0.046217907 0.089731956 1.639045013 0.034102515 0.011898479 2.95E-09 8.529758913 0.269373992 VSPAS(ph)PAGS(ph)PSADFAVHGESLGDR ddPTM_K562_Paclitaxel_30min_R1 1 VSPASPAGSPSADFAVHGESLGDR 24 0 A0A0A0MRP9;Q96C92-4;Q96C92-3;Q96C92-2;Q96C92 A0A0A0MRP9 SDCCAG3 Serologically defined colon cancer antigen 3 2 VS(0.135)PAS(0.864)PAGS(0.99)PS(0.011)ADFAVHGESLGDR 92.238 1.26E-05 0 713.47 676.52 708.49 653.46 472.9 670.19 431.63 533.97 615.87 667.61 TRUE FALSE 723.4607812 750.3847414 529.622937 611.5500004 537.3169863 789.0387866 513.5295392 488.6059156 675.0270653 531.5507155 1.36103811 1.411689834 0.996373293 1.150501697 1.010848016 1.484409227 0.966096977 0.919208462 1.26992034 1 9.054063536 -5.750940804 24.99941791 1.104397799 1.386364128 0.335637563 0.161231757 239.0169545 569141.0805 0.040759992 0.105363956 1.77E-06 5.750940804 0.281966329 VSPAS(ph)PAGSPSADFAVHGESLGDR ddPTM_K562_Paclitaxel_30min_R1 1 VSPASPAGSPSADFAVHGESLGDR 24 0 A0A0A0MRP9;Q96C92-4;Q96C92-3;Q96C92-2;Q96C92 A0A0A0MRP9 SDCCAG3 Serologically defined colon cancer antigen 3 1 VS(0.009)PAS(0.957)PAGS(0.033)PSADFAVHGESLGDR 94.57 7.77E-05 15449000 986.73 776.46 1288 1173.2 651.1 767.92 706.9 1046 863.01 1149.7 TRUE FALSE 1000.547264 861.2365286 962.8284702 1097.956203 739.7908432 904.0998299 841.0305847 957.1357711 945.9059665 915.3905089 1.093027789 0.94084057 1.051822649 1.199440231 0.808169667 0.987665724 0.918766992 1.045603774 1.033336 1 9.838243523 -5.232541177 21.72770579 0.999012693 1.093028618 0.079957879 0.096272047 4633.881532 3483743.61 0.02419986 1.748610561 5.85E-06 5.232541177 0.094015925 VSPGLPS(ph)PNLENGAPAVGPVQPR ddPTM_K562_Paclitaxel_30min_R1 2 VSPGLPSPNLENGAPAVGPVQPR 23 0 Q9UGP4;C9JRJ5 Q9UGP4 LIMD1 LIM domain-containing protein 1 1 VSPGLPS(1)PNLENGAPAVGPVQPR;VS(0.009)PGLPS(0.991)PNLENGAPAVGPVQPR 204.05 6.20E-31 35706000 5696.5 5154.3 7222.5 5643.2 4807.7 4823.3 4093.8 5853.7 4692.4 6118.1 TRUE FALSE 5776.268575 5717.063905 5399.090548 5281.27041 5462.590135 5678.644533 4870.577179 5356.391647 5143.125986 4871.227862 1.185793139 1.173639186 1.108363374 1.084176425 1.121399017 1.165752187 0.999866423 1.099597843 1.055817164 1 12.25006975 -2 0.10995376 0.955894981 1.641520445 0.601437692 0.039858455 78.79261002 0.606154993 0.377146656 8.197190735 0.01 2 0.685625464 VSPLNLSSVT(ph)P ddPTM_K562_Paclitaxel_30min_R1 4 VSPLNLSSVTP 11 0 Q9UJX2-3;Q9UJX2 Q9UJX2-3 CDC23 Cell division cycle protein 23 homolog 1 VSPLNLSSVT(1)P;VSPLNLSSVT(1)P;VSPLNLSSVT(1)P;VSPLNLSSVT(1)P 151.79 0.0012328 50318500 12123.7 12301.1 16170.8 13766.1 11616.6 11747.6 11748.5 13037.2 12711.4 15329.5 TRUE FALSE 12293.4692 13644.1757 12088.28154 12883.20396 13198.97759 13830.87192 13977.71654 11929.60848 13932.38677 12205.33949 1.007220587 1.1178858 0.990409284 1.055538355 1.081410116 1.133182074 1.145213254 0.977408986 1.141499324 1 13.5752248 -6.694757697 4.421714188 1.084697906 1.043241214 0.079752019 0.061342617 0.554548628 21.14594947 0.018156705 0.023297787 2.02E-07 6.694757697 -0.041456692 VSQSALNPHQS(ph)PDFKR ddPTM_K562_Paclitaxel_30min_R1 1 VSQSALNPHQSPDFKR 16 1 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 VSQSALNPHQS(1)PDFKR 79.029 0.014686 44825000 1145.6 1230.8 2507.1 1461.5 1097.9 1129.9 1048.8 1917.6 1638.1 2274 TRUE FALSE 1161.641934 1365.182906 1874.151598 1367.765931 1247.452568 1330.2719 1247.804325 1754.687911 1795.446824 1810.557552 0.641593488 0.754012434 1.035124012 0.75543908 0.688988078 0.734730525 0.689182359 0.9691423 0.991654103 1 10.82221832 -8.31698158 7.498344764 0.987099428 0.764163702 0.522346459 0.100612233 0.269941048 32.23332869 0.059637198 0.028531724 4.82E-09 8.31698158 -0.222935726 VSS(ph)PSPELGTTPASIFR ddPTM_K562_Paclitaxel_30min_R1 2 VSSPSPELGTTPASIFR 17 0 A0A5E8;Q99501 A0A5E8 GAS2L1 GAS2-like protein 1 1 VS(0.054)S(0.946)PSPELGTTPASIFR;VS(0.01)S(0.99)PSPELGTTPASIFR 253.79 3.21E-78 50622000 3952 3844.2 5988.3 4723.2 3460 3211.8 3378.9 4374.3 3718.4 4350.3 TRUE FALSE 4007.340193 4263.922756 4476.479603 4420.275092 3931.310578 3781.367634 4020.028636 4002.675911 4075.568934 3463.706472 1.156951441 1.231028897 1.292395773 1.276169077 1.135001078 1.09171134 1.160614697 1.155604825 1.176649629 1 11.75810096 -6.775580451 22.79392951 1.128333674 1.242361419 0.504452331 0.05748485 71.13652224 114663.7845 0.017789465 0.02029652 1.68E-07 6.775580451 0.114027745 VSS(ph)PVFGATSSIK ddPTM_K562_Paclitaxel_30min_R1 1 VSSPVFGATSSIK 13 0 F6Q6H0;I6L8A6;Q99708-3;Q99708;Q99708-2 F6Q6H0 RBBP8 DNA endonuclease RBBP8 1 VS(0.154)S(0.844)PVFGAT(0.003)SSIK 122.64 0.0012814 18860000 1863.8 1440.9 2671.5 1872.8 1560.7 1301.7 1338.6 1870.6 1225.8 2686.1 TRUE FALSE 1889.89895 1598.222335 1997.046784 1752.68699 1773.293763 1532.538218 1592.592362 1711.680854 1343.543567 2138.671346 0.883678997 0.747296838 0.933779184 0.819521426 0.829156741 0.716584258 0.744664376 0.800347776 0.628214134 1 11.06249908 -7.105079359 6.1292137 0.763558565 0.842859204 0.089436536 0.098878524 0.491002526 24.33296614 0.030626366 0.030751935 7.85E-08 7.105079359 0.079300639 VSSDNVADLHEKYS(ph)GSTP ddPTM_K562_Paclitaxel_30min_R1 1 VSSDNVADLHEKYSGSTP 18 1 P28074-3;P28074 P28074-3 PSMB5 Proteasome subunit beta type-5 1 VSSDNVADLHEKYS(0.333)GS(0.333)T(0.333)P 91.317 0.0025527 0 1060.9 1023.2 1868.8 1256.1 1086.3 837.99 911.89 1232.9 1584.6 1538 TRUE FALSE 1075.755873 1134.916436 1396.998327 1175.539368 1234.272451 986.5957605 1084.916367 1128.157449 1736.80791 1224.554756 0.878487359 0.926799256 1.140821446 0.95997289 1.007935697 0.805677129 0.885968032 0.921279709 1.418317884 1 10.25804157 -8.731033278 24.97588801 1.209159222 0.943599875 0.421224334 0.125762772 160.518822 131852.357 0.083156654 0.031421924 1.86E-09 8.731033278 -0.265559347 VSSPSCDSQGLHAEEAPSSEPQS(ph)PVAQTSGWPACSTPLPLVSR ddPTM_K562_Paclitaxel_30min_R1 2 VSSPSCDSQGLHAEEAPSSEPQSPVAQTSGWPACSTPLPLVSR 43 0 K7ENW4;Q96RE7 K7ENW4 NACC1 Nucleus accumbens-associated protein 1 1 VSSPSCDSQGLHAEEAPS(0.15)S(0.15)EPQS(0.607)PVAQT(0.086)S(0.007)GWPACSTPLPLVSR;VSSPSCDSQGLHAEEAPS(0.033)S(0.087)EPQS(0.665)PVAQT(0.143)S(0.037)GWPACS(0.018)T(0.018)PLPLVSR 101.88 1.85E-23 40786000 2087.7 1937.19 2693.7 1968.79 2047.28 1666.37 1715.23 2413.83 1957.33 2881.6 TRUE FALSE 2116.934241 2148.698955 2013.64212 1842.520621 2326.154197 1961.877323 2040.685938 2208.760075 2145.340292 2294.328338 0.922681469 0.936526355 0.877660833 0.80307626 1.013871536 0.855098762 0.889448081 0.962704439 0.935062457 1 11.16385615 -8.843209667 1.067320234 0.996427347 0.899507211 0.24194489 0.053777545 0.704496156 1.750009758 0.050559066 0.016881976 1.43E-09 8.843209667 -0.096920136 VSSQS(ph)FSEIER ddPTM_K562_Paclitaxel_30min_R1 2 VSSQSFSEIER 11 0 Q8N6H7;E9PIY6;A0A0D9SF70;G5E9L0;Q8N6H7-2;E9PQP3 Q8N6H7 ARFGAP2 ADP-ribosylation factor GTPase-activating protein 2 1 VSS(0.001)QS(0.855)FS(0.144)EIER;VSSQS(0.996)FS(0.003)EIER 146.59 0.0002748 39692000 1698.99 1892.93 2629.2 2051.53 1778.01 1772.59 1648.69 2378.2 2052.03 2329.1 TRUE FALSE 1722.781102 2099.606499 1965.425942 1919.954048 2020.205064 2086.933948 1961.520321 2176.157066 2249.13665 1854.428142 0.92900936 1.13221238 1.059855542 1.035334832 1.089395172 1.125378709 1.057749436 1.173492257 1.212846483 1 10.85675865 -5.254705248 24.59159159 1.100000013 0.929009262 0.407770029 0.061243689 640.2422525 2337951.155 0.015543572 0.144704325 5.56E-06 5.254705248 -0.170990751 VSVHVIEGDHR ddPTM_K562_Paclitaxel_30min_R1 4 VSVHVIEGDHR 11 0 A0A0U1RQF0;P49327 A0A0U1RQF0 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;;; 120.77 0.0022385 78240700 15748.5 14631.1 18947.3 17367.4 14307.8 14018.6 13579.7 17528.6 13342.4 19261.3 FALSE TRUE 15969.02759 16228.57298 14163.81978 16253.5327 16256.76459 16504.60188 16156.37718 16039.43602 14623.99714 15335.83649 1.041288332 1.058212442 0.923576604 1.059839984 1.060050725 1.076211388 1.053504789 1.045879436 0.953583272 1 13.90461924 -8.751776873 24.80835773 0.976791634 1.039569575 0.268798842 0.041580204 223.6003421 574102.1955 0.03008904 0.011051221 1.77E-09 8.751776873 0.062777941 VT(ph)AMALS(ph)KS(ph)T(ph)NSHK ddPTM_K562_Paclitaxel_30min_R1 1 VTAMALSKSTNSHK 14 1 Q5T1B0-3 Q5T1B0-3 4 VT(1)AMALS(1)KS(1)T(0.973)NS(0.027)HK 67.648 0.018703 0 583.11 690.88 721.39 484.29 496.5 522.49 607.8 475.29 628.61 534.09 TRUE FALSE 591.275339 766.3126148 539.2661725 453.229807 564.1317058 615.1462654 723.1268771 434.9111478 688.9907992 425.2421648 1.390443818 1.802061691 1.268138997 1.065815774 1.326612816 1.446578717 1.700506057 1.022737592 1.620231614 1 8.732140844 -12.15620095 2.328632558 0.078153558 1.398877437 0.202481231 0.240750404 11257051.19 2571934.214 54807444.63 0.060716739 6.98E-13 12.15620095 1.320723879 VT(ph)FQLTY(ph)EEVLKR ddPTM_K562_Paclitaxel_30min_R1 1 VTFQLTYEEVLKR 13 1 F8WAS2;P19827-2;P19827 F8WAS2 ITIH1 Inter-alpha-trypsin inhibitor heavy chain H1 2 VT(0.994)FQLT(0.026)Y(0.98)EEVLKR 43.594 0.029547 30010000 605.78 487.33 684.4 723.2 814.25 861.78 679.74 710.64 690.12 748.59 TRUE FALSE 614.262789 540.5383374 511.6147554 676.8171889 925.1646354 1014.604583 808.7171165 650.2666963 756.4091095 596.0269471 1.030595667 0.906902515 0.858375209 1.135547968 1.552219476 1.702279717 1.356846566 1.091002176 1.269085422 1 9.219233748 -6.523507146 5.522693511 1.353847468 0.937356804 0.452895656 0.19459228 0.152592311 15.97139586 0.061662018 0.084845473 3.00E-07 6.523507146 -0.416490664 VT(ph)NDISPESSPGVGR ddPTM_K562_Paclitaxel_30min_R1 1 VTNDISPESSPGVGR 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E9PGW9;E7EV93;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 VT(0.798)NDIS(0.004)PES(0.035)S(0.163)PGVGR 140.77 6.22E-06 345690000 2281.6 1969.2 2840.6 2249.2 2109.2 1958 1803.2 2402.4 2017 1968.8 TRUE FALSE 2313.549439 2184.203915 2123.455398 2104.946379 2396.508749 2305.223808 2145.347787 2198.301125 2210.741862 1567.557479 1.475894485 1.393380431 1.354626817 1.342819263 1.528817144 1.470583273 1.368592741 1.402373536 1.410309919 1 10.61430263 -10.81300864 0.788582596 0.951625989 1.417577104 0.833540145 0.055855914 15.74214974 5.438839274 2.101168858 0.020321298 1.54E-11 10.81300864 0.465951114 VT(ph)RSPPETAAPVEDMAR ddPTM_K562_Paclitaxel_30min_R1 1 VTRSPPETAAPVEDMAR 17 1 Q9Y3L3;A0A2R8Y5V0;Q6ZT62-2;Q6ZT62;A0A3B3IU28 Q9Y3L3 SH3BP1 SH3 domain-binding protein 1 1 VT(0.804)RS(0.196)PPETAAPVEDMAR 91.592 0.030998 106450000 881.63 625.55 804.5 824.56 774.31 743.85 816.07 812.13 844.02 1177.5 TRUE FALSE 893.9755401 693.8496645 601.3940251 771.6764122 879.7841312 875.7613533 970.9150223 743.1344873 925.0918922 937.5248537 0.95354863 0.740086689 0.641469954 0.823099686 0.938411529 0.934120679 1.035615236 0.792655773 0.986738526 1 9.872713126 -6.668366445 3.999707976 0.941683731 0.768948373 0.408086843 0.093877323 0.222720808 6.670446925 0.028737929 0.037298297 2.15E-07 6.668366445 -0.172735359 VT(ph)SPISTDGMAEELTMDGVAGEHSQIPNGSR ddPTM_K562_Paclitaxel_30min_R1 1 VTSPISTDGMAEELTMDGVAGEHSQIPNGSR 31 0 F8VZQ2;Q9UKN5 F8VZQ2 PRDM4 PR domain zinc finger protein 4 1 VT(0.415)S(0.38)PIS(0.103)T(0.095)DGMAEELT(0.006)MDGVAGEHSQIPNGSR 47.537 0.014454 7466900 130.51 192.25 299.71 274.32 261.74 114.5 134.47 238.07 0 416.84 TRUE FALSE 132.3375427 213.2405051 224.0445037 256.726343 297.3934193 134.8049673 159.9849805 217.8444675 0 331.8877792 0.398741837 0.642507855 0.675061023 0.773533583 0.896066194 0.406176352 0.48204541 0.656379901 0 1 8.374551697 -7.291484102 24.9795872 0.48576439 0.680490851 0.091965171 0.259200208 1537.004063 1277880.398 0.087891291 0.077522694 5.11E-08 7.291484102 0.194726461 VT(ph)VLVMCHT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 VTVLVMCHTR 10 0 A0A0D9SEM9 A0A0D9SEM9 DDX39A 2 VT(1)VLVMCHT(1)R 90.434 0.02157 50091000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 VT(ph)VNSASQLQAHNT(ph)GAKHRWMMEGQR ddPTM_K562_Paclitaxel_30min_R1 1 VTVNSASQLQAHNTGAKHRWMMEGQR 26 2 A0A3B3ITE2;C9J6X6;Q66K41 A0A3B3ITE2 ZNF385C Zinc finger protein 385C 2 VT(0.766)VNS(0.121)AS(0.121)QLQAHNT(0.991)GAKHRWMMEGQR 40.404 0.028888 0 0 0 152.09 0 64.804 0 0 0 0 0 TRUE FALSE 0 0 113.6929985 0 73.63140194 0 0 0 0 0 0 VTAGWPSEPGQGDLNPES(ph)PAALGQDLLEPR ddPTM_K562_Paclitaxel_30min_R1 2 VTAGWPSEPGQGDLNPESPAALGQDLLEPR 30 0 Q92766-4;Q92766-2;A0A087X055;Q92766;Q92766-5;Q92766-3 Q92766-4 RREB1 Ras-responsive element-binding protein 1 1 VTAGWPSEPGQGDLNPES(1)PAALGQDLLEPR;VTAGWPSEPGQGDLNPES(1)PAALGQDLLEPR 105.54 1.09E-09 56424000 4421.9 3684.1 6189.2 4413.8 3866.7 3558.5 4009.6 4891.6 4998.2 5627.4 TRUE FALSE 4483.820243 4086.342497 4626.659913 4130.718623 4393.410004 4189.550011 4770.400668 4476.028048 5478.299443 4480.532791 1.000733719 0.912021558 1.032613782 0.921925766 0.980555262 0.93505621 1.064694957 0.998994596 1.222689287 1 12.12945458 -8.086136646 1.731899083 1.093511595 0.96398048 0.359386548 0.068287618 0.379151395 2.173977287 0.042579165 0.01959748 8.20E-09 8.086136646 -0.129531116 VTDALPEPEPPGAMAAS(ph)EDEEEEEEALEAMQSR ddPTM_K562_Paclitaxel_30min_R1 4 VTDALPEPEPPGAMAASEDEEEEEEALEAMQSR 33 0 Q9Y3E7-2;Q9Y3E7-4;Q9Y3E7;Q9Y3E7-3 Q9Y3E7-2 CHMP3 Charged multivesicular body protein 3 1 VTDALPEPEPPGAMAAS(1)EDEEEEEEALEAMQSR;VTDALPEPEPPGAMAAS(1)EDEEEEEEALEAMQSR;VTDALPEPEPPGAMAAS(1)EDEEEEEEALEAMQSR;VTDALPEPEPPGAMAAS(1)EDEEEEEEALEAMQSR 128.49 2.23E-21 124418000 10934.3 11544.6 14240.5 13009.1 11955.6 9961.7 10208.2 12187.4 11996.2 13141.7 TRUE FALSE 11087.41394 12805.07847 10645.30965 12174.75455 13584.15513 11728.26763 12145.15266 11152.0043 13148.48861 10463.41433 1.059636328 1.223795414 1.017383936 1.163554665 1.298252626 1.120883419 1.16072558 1.0658093 1.256615499 1 13.35306608 -11.03245356 12.18058287 0.999981362 1.151481625 0.221940249 0.085293082 0 0 0.07967442 0.019323885 9.28E-12 11.03245356 0.151500262 VTDAPTYTT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 VTDAPTYTTR 10 0 J3KNE1;D6RGD2;Q9NXV6 J3KNE1 CDKN2AIP CDKN2A-interacting protein 1 VTDAPT(0.001)YT(0.002)T(0.997)R 102.06 0.020802 656080000 175.18 138.54 111.14 0 0 0 0 177.89 150.19 118.53 TRUE FALSE 177.6330605 153.6662657 83.08133244 0 0 0 0 162.7771341 164.6164206 94.37352094 1.882234113 1.628277341 0.880345796 0 0 0 0 1.724817857 1.74430729 1 6.560310224 -8.27864944 24.64368881 1.550922057 0.603122865 0.252033778 0.677502899 1066.770996 1527536.992 0.421107589 0.203110093 5.26E-09 8.27864944 -0.947799192 VTFGEDLS(ph)PEVFDESLPANTPLR ddPTM_K562_Paclitaxel_30min_R1 1 VTFGEDLSPEVFDESLPANTPLR 23 0 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 1 VT(0.002)FGEDLS(0.998)PEVFDESLPANTPLR 92.198 3.36E-05 0 680.78 604.62 833.84 708.78 343.05 450.14 582.89 612.37 642.39 756.29 TRUE FALSE 690.3130204 670.6344563 623.3267792 663.3220232 389.7792179 529.9660087 693.4903346 560.3453462 704.0944298 602.1576829 1.146399091 1.113719006 1.035155404 1.101575288 0.647304234 0.880111678 1.15167564 0.930562479 1.169285803 1 9.233997515 VTFGEDLS(ph)PEVFDESLPANTPLRK ddPTM_K562_Paclitaxel_30min_R1 2 VTFGEDLSPEVFDESLPANTPLRK 24 1 E9PEI0;Q69YH5 E9PEI0 CDCA2 Cell division cycle-associated protein 2 1 VT(0.003)FGEDLS(0.997)PEVFDESLPANTPLRK;VT(0.002)FGEDLS(0.997)PEVFDES(0.001)LPANTPLRK 82.665 0.00015696 23347600 1418.38 1138.28 2520.21 1495.12 1320.42 1170.02 1421.94 1872.57 1439.33 2137.27 TRUE FALSE 1438.241696 1262.56126 1883.951816 1399.229695 1500.283559 1377.506619 1691.745692 1713.48349 1577.584078 1701.693201 0.845182725 0.741944117 1.107104274 0.822257323 0.881641625 0.809491757 0.994154346 1.006928564 0.927067274 1 10.73275524 -7.778539924 24.99505156 0.982614969 0.871627853 0.271829402 0.091365796 357.6387784 522738.7166 0.0382295 0.025845795 1.67E-08 7.778539924 -0.110987115 VTGDDS(ph)MRMSHLK ddPTM_K562_Paclitaxel_30min_R1 1 VTGDDSMRMSHLK 13 1 A0A087WWY3;Q60FE5;P21333-2;P21333;H7C2E7 A0A087WWY3 FLNA Filamin-A 1 VT(0.001)GDDS(0.957)MRMS(0.043)HLK 54.199 0.029533 0 217.16 171.86 206.04 252.3 224.81 211.21 180.82 164.83 239.03 290.98 TRUE FALSE 220.20091 190.624256 154.0226537 236.1186073 255.4329281 248.665128 215.1296511 150.8266627 261.9898995 231.6781163 0.950460551 0.82279785 0.66481313 1.01916664 1.102533688 1.073321607 0.928571306 0.651018167 1.130835764 1 7.855977967 -6.288803951 24.91945403 0.977991104 0.813701194 0.23892313 0.141579389 1099.589813 1001334.993 0.042110556 0.062478239 5.14E-07 6.288803951 -0.164289909 VTIPPPSSSVAISNHVT(ph)PPPIPK ddPTM_K562_Paclitaxel_30min_R1 2 VTIPPPSSSVAISNHVTPPPIPK 23 0 A0A1W2PRW5;F5H2U7;A0A1W2PNT6;F5GYH1;A0A1W2PRM0;A0A1W2PRL5;A0A1W2PR09;Q8NC96 A0A1W2PRW5 NECAP1 Adaptin ear-binding coat-associated protein 1 1 VTIPPPSSSVAISNHVT(1)PPPIPK;VTIPPPS(0.001)S(0.001)S(0.001)VAIS(0.05)NHVT(0.945)PPPIPK 94.087 0.00023924 43337000 5735.9 5064.9 8580.4 6348.4 4924.2 5450.7 5053.6 6650.7 5386.5 8176.6 TRUE FALSE 5816.220297 5617.90291 6414.171899 5941.242038 5594.959407 6417.305113 6012.494218 6085.681523 5903.897393 6510.204432 0.893400562 0.862938018 0.985248922 0.912604527 0.859413781 0.9857302 0.923549219 0.934791155 0.906868203 1 12.66848713 -15 0.128188279 1.255857396 0.8861681 0.282961466 0.04030366 203.53268 1.651969997 13.53382809 0.324194246 1.00E-15 15 -0.369689296 VTKNEEPS(ph)EEEIDAPKPK ddPTM_K562_Paclitaxel_30min_R1 2 VTKNEEPSEEEIDAPKPK 18 2 Q9NR30;Q9NR30-2 Q9NR30 DDX21 Nucleolar RNA helicase 2 1 VT(0.001)KNEEPS(0.999)EEEIDAPKPK;VTKNEEPS(1)EEEIDAPKPK 119.34 0.00073068 37350000 3956.3 1911.66 11589.6 4444 2278.5 1585.06 1727.21 3731 3441.1 6446.7 TRUE FALSE 4011.700406 2120.381504 8663.662142 4158.981731 2588.870275 1866.148136 2054.939081 3414.028262 3771.63303 5132.859001 0.781572298 0.413099503 1.687882356 0.810266117 0.504371983 0.363568946 0.400349801 0.6651319 0.734801605 1 12.32554692 -6.541900229 10.30540545 0.579156815 0.962985847 0.17466904 0.339638593 0.552540911 288.3128219 0.101908714 0.13273231 2.87E-07 6.541900229 0.383829032 VTLQDYRLPDS(ph)DDDEDEETAIQR ddPTM_K562_Paclitaxel_30min_R1 4 VTLQDYRLPDSDDDEDEETAIQR 23 1 H3BRF9;Q96K21-4;Q96K21-2;Q96K21 H3BRF9 ZFYVE19 Abscission/NoCut checkpoint regulator 1 VT(0.007)LQDY(0.017)RLPDS(0.977)DDDEDEETAIQR;VTLQDYRLPDS(1)DDDEDEETAIQR;VTLQDY(0.014)RLPDS(0.985)DDDEDEETAIQR;VT(0.001)LQDY(0.033)RLPDS(0.965)DDDEDEETAIQR 85.932 0.00033042 124096000 3347.33 2703.18 3868.87 3728.14 2785.3 2670.82 2380.68 2927.88 4478.6 3258.69 TRUE FALSE 3394.202947 2998.322334 2892.125919 3489.033787 3164.705016 3144.452427 2832.401602 2679.138319 4908.789541 2594.567189 1.308196204 1.155615606 1.114685305 1.344745976 1.219742942 1.211937174 1.091666315 1.032595467 1.891949286 1 11.34127818 VTLYNTDQDGSDS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 VTLYNTDQDGSDSPR 15 0 C9JXI1;C9JVP0;Q9UPW0-2;Q9UPW0 C9JXI1 FOXJ3 Forkhead box protein J3 1 VTLYNTDQDGS(0.001)DS(0.999)PR;VTLYNTDQDGS(0.001)DS(0.999)PR 305.9 8.41E-196 53737000 2840.9 3149.2 3801.3 3269.6 2827.5 2751.3 2877 4218 2235.28 4633.3 TRUE FALSE 2880.681365 3493.040306 2841.614801 3059.90249 3212.65337 3239.204425 3422.895731 3859.654572 2449.988631 3689.030917 0.780877534 0.946872061 0.770287608 0.829459703 0.87086648 0.878063778 0.927857697 1.04625162 0.664127975 1 11.84902616 -7.229744545 2.068957075 0.911132456 0.837147599 0.094499114 0.103882484 0.83781706 7.04543991 0.039434031 0.037036626 5.89E-08 7.229744545 -0.073984856 VTNDIS(ph)PESS(ph)PGVGR ddPTM_K562_Paclitaxel_30min_R1 1 VTNDISPESSPGVGR 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E9PGW9;E7EV93;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 2 VTNDIS(1)PES(0.003)S(0.997)PGVGR 137.27 3.60E-05 56287000 4161.1 3841.5 4687.3 3690.5 3286.9 3534.9 2923.6 3687.9 3286.6 4436.2 TRUE FALSE 4219.368238 4260.927961 3503.933143 3453.807848 3734.631428 4161.764883 3478.337838 3374.589876 3602.292615 3532.100005 1.194577796 1.206344089 0.992025463 0.977834105 1.057340229 1.178269267 0.984778979 0.955406096 1.01987277 1 11.78631048 -5.75643165 24.94265998 1.023221759 1.200461029 0.596563359 0.059104619 86.60505589 431350.9491 0.01661604 0.041168079 1.75E-06 5.75643165 0.17723927 VTNDIS(ph)PESSPGVGRR ddPTM_K562_Paclitaxel_30min_R1 4 VTNDISPESSPGVGRR 16 1 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E9PGW9;E7EV93;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 VT(0.053)NDIS(0.947)PESSPGVGRR;VT(0.013)NDIS(0.935)PES(0.053)SPGVGRR;VT(0.011)NDIS(0.989)PESSPGVGRR;VT(0.011)NDIS(0.989)PESSPGVGRR 101.23 0.0019213 332484000 4002.64 3690.37 5398.74 4338.09 4099.99 3806.55 3259.23 4235.82 4674.09 4434.45 TRUE FALSE 4058.689309 4093.297077 4035.761316 4059.864324 4658.478051 4481.588196 3877.651878 3875.960652 5123.057229 3530.706656 1.149540221 1.159342159 1.143046339 1.14987302 1.319418039 1.269317628 1.098265094 1.097786089 1.45100053 1 11.78574125 -12.30804303 2.27920103 0.000193462 1.198523991 0.2479096 0.10627832 2434493.522 558848.6682 12521788.22 0.027070586 4.92E-13 12.30804303 1.198330529 VTNDISPES(ph)SPGVGR ddPTM_K562_Paclitaxel_30min_R1 3 VTNDISPESSPGVGR 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E9PGW9;E7EV93;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 VT(0.409)NDIS(0.007)PES(0.583)S(0.002)PGVGR;VT(0.001)NDISPES(0.903)S(0.095)PGVGR;VT(0.399)NDIS(0.007)PES(0.497)S(0.097)PGVGR 208.38 2.17E-13 1568040000 8294.4 7958.6 10389.1 8989.4 8477.2 6751.1 6899.2 8447 7756 7849 TRUE FALSE 8410.54719 8827.546862 7766.243214 8412.860119 9631.93816 7948.312795 8208.287184 7729.374625 8500.998455 6249.369492 1.345823319 1.412549998 1.242724282 1.346193425 1.541265591 1.271858354 1.313458453 1.236824713 1.360296981 1 12.60949493 -11.68907 0.317324513 0.706609768 1.36970439 0.609301522 0.08303797 18.18395077 1.034150828 4.189175313 0.081849874 2.05E-12 11.68907 0.663094622 VTNLSEDTRETDLQELFRPFGSISR ddPTM_K562_Paclitaxel_30min_R1 2 VTNLSEDTRETDLQELFRPFGSISR 25 2 K7ENA8;O75821 K7ENA8 EIF3G Eukaryotic translation initiation factor 3 subunit G 0 ; 91.964 6.22E-05 21718000 1084.16 1013.31 1296.17 1290.7 943.34 1019.25 1123.3 1254.5 1129.25 1731.53 FALSE TRUE 1099.341585 1123.946613 968.9358527 1207.920279 1071.838879 1199.999677 1336.440311 1147.922395 1237.719508 1378.643236 0.797408319 0.815255596 0.702818414 0.876165964 0.777459209 0.870420748 0.969388074 0.832646449 0.897780859 1 10.42903345 -7.426595585 4.145953914 0.91223694 0.794950229 0.529154421 0.057892847 0.202845555 6.132027783 0.020823926 0.017909266 3.74E-08 7.426595585 -0.11728671 VTPTEEHVEGPLPSPVT(ph)NGTSPAQLNGGSACSSR ddPTM_K562_Paclitaxel_30min_R1 1 VTPTEEHVEGPLPSPVTNGTSPAQLNGGSACSSR 34 0 H3BUQ9;H3BN50;H3BQS0;Q15599-3;Q15599-2;Q15599 H3BUQ9 SLC9A3R2 Na(+)/H(+) exchange regulatory cofactor NHE-RF2 1 VTPTEEHVEGPLPS(0.007)PVT(0.727)NGT(0.132)S(0.132)PAQLNGGS(0.001)ACSSR 85.19 6.05E-08 14230000 270.41 232.5 321.68 110.3 133.35 140.93 65.062 243.61 160.67 0 TRUE FALSE 274.1965743 257.8851363 240.4679055 103.2258517 151.5145276 165.9219567 77.40717485 222.9138099 176.1030714 0 0 VTPTKESYTEEIVS(ph)EAESHVSGISR ddPTM_K562_Paclitaxel_30min_R1 2 VTPTKESYTEEIVSEAESHVSGISR 25 1 Q5QJE6;J3KP30;E9PRB3 Q5QJE6 DNTTIP2 Deoxynucleotidyltransferase terminal-interacting protein 2 1 VT(0.001)PT(0.003)KES(0.012)Y(0.138)T(0.156)EEIVS(0.684)EAES(0.005)HVSGISR;VTPTKESYTEEIVS(0.961)EAES(0.036)HVS(0.003)GISR 77.488 0.00018045 54663000 3013.5 2335.4 4281.4 2682.6 2127.41 2111.1 2215.7 2734.2 5477.5 3788.9 TRUE FALSE 3055.698297 2590.38687 3200.507618 2510.550043 2417.199259 2485.473944 2636.117508 2501.912644 6003.638349 3016.7201 1.01292072 0.85867657 1.06092296 0.832211793 0.80126733 0.823899421 0.87383563 0.829348617 1.990121108 1 11.55876513 -8.729860913 24.99779377 1.495061387 0.884335207 0.516255868 0.235573697 118.3607807 93695.78892 0.143854166 0.054360801 1.86E-09 8.729860913 -0.61072618 VTQHES(ph)DNENEIQIQNK ddPTM_K562_Paclitaxel_30min_R1 2 VTQHESDNENEIQIQNK 17 0 Q5VZL5-2;Q5VZL5-4;Q5VZL5 Q5VZL5-2 ZMYM4 Zinc finger MYM-type protein 4 1 VT(0.396)QHES(0.604)DNENEIQIQNK;VTQHES(1)DNENEIQIQNK 164.82 7.71E-08 42979000 3925.8 2856.2 6478.8 4089.3 2977.6 2396.61 2627 4394.5 3795.7 4505.6 TRUE FALSE 3980.773312 3168.049575 4843.146811 3827.030601 3383.199531 2821.615133 3125.459536 4021.159795 4160.293945 3587.356247 1.109667688 0.883115408 1.350060177 1.06681086 0.943089924 0.786544446 0.871243144 1.120925695 1.159710288 1 11.80870531 -6.625550036 5.668246158 0.972000826 1.109193099 0.147147331 0.145938672 0.426035037 20.04692346 0.046550119 0.060382782 2.37E-07 6.625550036 0.137192274 VTRS(ph)PPETAAPVEDMAR ddPTM_K562_Paclitaxel_30min_R1 2 VTRSPPETAAPVEDMAR 17 1 Q9Y3L3;A0A2R8Y5V0;Q6ZT62-2;Q6ZT62;A0A3B3IU28 Q9Y3L3 SH3BP1 SH3 domain-binding protein 1 1 VT(0.173)RS(0.827)PPETAAPVEDMAR;VT(0.043)RS(0.957)PPETAAPVEDMAR 133.98 1.22E-07 122052000 1785.27 1840.36 2324.83 2105.32 1801.5 2393.64 1738.5 2010.64 1878.79 2224.59 TRUE FALSE 1810.269288 2041.296728 1737.897913 1970.294198 2046.8948 2818.118446 2068.371299 1839.823582 2059.256174 1771.217337 1.022048085 1.152482355 0.981188405 1.112395502 1.155642934 1.591063043 1.16776821 1.038733951 1.162621961 1 10.79052553 -6.739121527 3.666520865 1.208938248 1.062423815 0.121767596 0.155369318 0.463139464 13.2274756 0.051039314 0.063963009 1.82E-07 6.739121527 -0.146514433 VTS(ph)GGVSESPSGFSK ddPTM_K562_Paclitaxel_30min_R1 2 VTSGGVSESPSGFSK 15 0 E7EPP6;O14757-2;O14757-3;O14757 E7EPP6 CHEK1 Serine/threonine-protein kinase Chk1 1 VTS(0.999)GGVSESPSGFSK;VT(0.105)S(0.895)GGVSESPSGFSK 174.24 1.66E-06 93498000 7961.1 6663.6 13598.5 8457.5 6670.1 5796.1 5194.7 8356.1 8306.6 10203.5 TRUE FALSE 8072.579962 7391.154383 10165.39049 7915.073804 7578.680546 6823.956954 6180.367207 7646.197148 9104.486045 8124.021099 0.99366802 0.909790151 1.251275737 0.974280311 0.932873075 0.839972825 0.760752235 0.941183812 1.120687149 1 12.98797827 -6.516764682 23.32865158 0.91979401 1.049962297 0.161027763 0.119343925 196.7398388 750677.5695 0.03645413 0.0488579 3.04E-07 6.516764682 0.130168288 VTSLANLIS(ph)PVR ddPTM_K562_Paclitaxel_30min_R1 2 VTSLANLISPVR 12 0 Q7Z628;Q7Z628-2 Q7Z628 NET1 Neuroepithelial cell-transforming gene 1 protein 1 VTSLANLIS(1)PVR;VTSLANLIS(1)PVR 128.22 0.0011335 17372500 1854.13 1901.97 1886.12 1641.6 1729.29 1105.57 1547.66 1900.66 1452.33 2218.78 TRUE FALSE 1880.09354 2109.633517 1409.945679 1536.315124 1964.848575 1301.627317 1841.320406 1739.187069 1591.832786 1766.591418 1.064249221 1.194183044 0.798116454 0.869649376 1.112225812 0.736801562 1.042301229 0.984487444 0.901075806 1 10.78675269 -5.748924005 24.99999203 0.931408508 1.129216171 0.342220308 0.110149281 245.8301776 491047.6333 0.027089333 0.070604852 1.78E-06 5.748924005 0.197807662 VTSLRS(ph)PGASVSSSLTSLCSSSSDPAPSDR ddPTM_K562_Paclitaxel_30min_R1 2 VTSLRSPGASVSSSLTSLCSSSSDPAPSDR 30 1 Q9P206;Q9P206-3;Q9P206-2 Q9P206 KIAA1522 Uncharacterized protein KIAA1522 1 VT(0.095)S(0.263)LRS(0.615)PGAS(0.007)VS(0.004)S(0.004)S(0.005)LT(0.002)S(0.002)LCSSS(0.001)S(0.001)DPAPSDR;VT(0.039)S(0.129)LRS(0.824)PGAS(0.001)VS(0.004)S(0.001)SLTSLCSSSSDPAPSDR 89.167 5.88E-07 58162000 675.52 711.89 805.05 822.54 668.59 643.62 769.14 847.12 866.92 1081.29 TRUE FALSE 684.9793642 789.6165577 601.8051708 769.785966 759.6632773 757.7569701 915.0802998 775.1518684 950.1915395 860.9225045 0.795634172 0.917174953 0.699023626 0.894140834 0.882382878 0.880168617 1.062906702 0.90037357 1.103689977 1 9.74973957 -7.424557922 1.046746485 1.018626133 0.819813927 0.549605261 0.076078798 0.396185012 0.899968788 0.043519305 0.033724265 3.76E-08 7.424557922 -0.198812206 VTSSMS(ph)SPSMQPK ddPTM_K562_Paclitaxel_30min_R1 1 VTSSMSSPSMQPK 13 0 A0A2R8Y7R9;Q13136-2;Q13136 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 VTSSMS(0.94)S(0.057)PS(0.002)MQPK 134.49 0.00021444 23571000 4090.2 3452.2 6840.8 4138.6 2724.8 2975.9 2696.4 4156.5 3562.6 5583.9 TRUE FALSE 4147.475419 3829.122871 5113.755434 3873.16872 3095.963891 3503.634081 3208.027824 3803.379381 3904.803648 4445.898115 0.932876848 0.861270945 1.150218764 0.871178021 0.696364112 0.788059913 0.721570252 0.855480554 0.878293552 1 12.11825917 -6.514275981 24.84506512 0.806907174 0.976313958 0.305453597 0.104862846 415.1531002 1198977.072 0.02992505 0.040692466 3.06E-07 6.514275981 0.169406785 VTSSMSS(ph)PSMQPK ddPTM_K562_Paclitaxel_30min_R1 1 VTSSMSSPSMQPK 13 0 A0A2R8Y7R9;Q13136-2;Q13136 A0A2R8Y7R9 PPFIA1 Liprin-alpha-1 1 VTSSMS(0.093)S(0.739)PS(0.169)MQPK 123.26 0.0012108 26464000 5486 4422.9 8709.9 5534.9 4378.5 4078.4 3773.3 5947.5 5330.3 8081.5 TRUE FALSE 5562.820926 4905.807179 6510.978022 5179.916287 4974.925829 4801.646976 4489.263977 5442.222752 5842.299131 6434.485864 0.86453231 0.762424113 1.011887843 0.805024115 0.77316602 0.746236308 0.697688063 0.845789837 0.907966737 1 12.65160916 -8.933574722 2.424529917 0.996974856 0.809440134 0.35907708 0.08050913 0.309318307 3.979515193 0.081497273 0.022411045 1.17E-09 8.933574722 -0.187534722 VTSSVPLPSGS(ph)TSSPGRGR ddPTM_K562_Paclitaxel_30min_R1 1 VTSSVPLPSGSTSSPGRGR 19 1 Q15036-2;Q15036 Q15036-2 SNX17 Sorting nexin-17 1 VTSSVPLPS(0.102)GS(0.224)T(0.224)S(0.224)S(0.224)PGRGR 70.15 0.012986 27028000 1789.5 1734.6 2620.2 1781.2 1646.4 1353.5 1161.2 1739.5 1893.4 2162.9 TRUE FALSE 1814.558521 1923.989494 1958.698104 1666.961804 1870.667554 1593.524221 1381.531638 1591.718617 2075.26953 1722.099793 1.05368953 1.117234612 1.137389431 0.967982118 1.086271284 0.925337909 0.80223669 0.924289419 1.205080878 1 10.74995303 -6.619362395 1.491547329 0.964939998 1.100624152 0.172335083 0.104375677 0.651562726 2.982603662 0.039177597 0.061519388 2.40E-07 6.619362395 0.135684154 VTSSVPLPSGSTS(ph)SPGR ddPTM_K562_Paclitaxel_30min_R1 1 VTSSVPLPSGSTSSPGR 17 0 Q15036-2;Q15036 Q15036-2 SNX17 Sorting nexin-17 1 VTSSVPLPS(0.115)GS(0.036)T(0.24)S(0.529)S(0.08)PGR 135.69 1.09E-07 67895000 4182.3 4105.5 5189.2 4558.8 3704.8 3903.2 3912.5 4625.3 3127 5297.4 TRUE FALSE 4240.865104 4553.752374 3879.122281 4266.418972 4209.456483 4595.377716 4654.87645 4232.351895 3427.362322 4217.786972 1.005471621 1.079654426 0.919705596 1.011530217 0.998024915 1.089523427 1.103630051 1.003453214 0.812597304 1 12.04227052 -8.563507844 13.9938425 0.906803408 1.029576047 0.354385554 0.065665521 1.942804149 665.8872577 0.043983441 0.016624152 2.73E-09 8.563507844 0.122772638 VTSSVPLPSGSTS(ph)SPGRGR ddPTM_K562_Paclitaxel_30min_R1 1 VTSSVPLPSGSTSSPGRGR 19 1 Q15036-2;Q15036 Q15036-2 SNX17 Sorting nexin-17 1 VTSSVPLPS(0.035)GS(0.158)T(0.127)S(0.34)S(0.34)PGRGR 86.073 0.0024828 45867000 1371.2 1430.6 2409.6 1648.7 1490.2 1438.8 1156.8 1706.3 1615.6 1860.7 TRUE FALSE 1390.401031 1586.797746 1801.266678 1542.959761 1693.190469 1693.950978 1376.296761 1561.339165 1770.785599 1481.488319 0.938516364 1.071083535 1.215849397 1.041493032 1.142898292 1.143411633 0.928996026 1.053899072 1.195274763 1 10.53283154 -10.33024714 15.39719924 1 1.082114628 0.065456197 0.09207381 0 0 0.089699799 0.021755397 4.67E-11 10.33024714 0.082114628 VTSSVPLPSGSTSS(ph)PGR ddPTM_K562_Paclitaxel_30min_R1 3 VTSSVPLPSGSTSSPGR 17 0 Q15036-2;Q15036 Q15036-2 SNX17 Sorting nexin-17 1 VTSSVPLPSGSTS(0.043)S(0.957)PGR;VTSSVPLPS(0.001)GST(0.002)S(0.049)S(0.948)PGR;VTSSVPLPSGSTS(0.002)S(0.998)PGR 300.56 7.10E-178 456519000 11846 10842.9 13291.8 12533.1 11253.5 9794.7 10867.7 13603.3 7971.4 13948.3 TRUE FALSE 12011.88055 12026.76449 9936.120699 11729.28306 12786.41722 11531.65252 12929.78934 12447.61476 8737.088587 11105.6288 1.081602921 1.082943137 0.894692311 1.056156591 1.151345633 1.038361062 1.164255493 1.120838358 0.78672615 1 13.43900346 -8.749787283 24.9999998 0.893363041 1.071944701 0.416338172 0.085421946 188.7124338 404895.2156 0.0597918 0.022184021 1.78E-09 8.749787283 0.178581661 VTSSVPLPSGSTSS(ph)PGRGR ddPTM_K562_Paclitaxel_30min_R1 2 VTSSVPLPSGSTSSPGRGR 19 1 Q15036-2;Q15036 Q15036-2 SNX17 Sorting nexin-17 1 VTSSVPLPS(0.089)GS(0.217)T(0.153)S(0.153)S(0.389)PGRGR;VTSSVPLPS(0.001)GS(0.014)T(0.04)S(0.411)S(0.535)PGRGR 111.25 0.00025424 78742000 3521.1 3123 4997.7 3401.1 2978.9 2617.9 2512.8 3241.5 2742.1 3889.2 TRUE FALSE 3570.406264 3463.979701 3735.968824 3182.968669 3384.676613 3082.147808 2989.590682 2966.114342 3005.490957 3096.578905 1.153016401 1.118647323 1.206482683 1.027898454 1.093037419 0.995339664 0.965449541 0.957868161 0.970584328 1 11.59645949 -6.886050324 1.020438664 0.967065275 1.155395981 0.790252759 0.038199733 0.220510606 0.494535716 0.017652568 0.023644361 1.30E-07 6.886050324 0.188330706 VTTGVS(ph)S(ph)IAS(ph)EDSRK ddPTM_K562_Paclitaxel_30min_R1 1 VTTGVSSIASEDSRK 15 1 F8VNQ3;G3V106;Q9NT68-2;Q9NT68 F8VNQ3 TENM2 "Teneurin-2;Ten-2, soluble form;Ten-2 intracellular domain" 3 VT(0.002)T(0.003)GVS(0.998)S(0.998)IAS(0.998)EDS(0.002)RK 86.498 0.028627 5665400 2717.5 2258.5 4009.3 2905.8 1962.6 1856.9 1874.1 2737.9 2008.6 3041.9 TRUE FALSE 2755.553384 2505.090668 2997.102629 2719.434994 2229.939347 2186.195143 2229.700692 2505.298306 2201.535005 2421.95911 1.137737368 1.034324096 1.237470367 1.122824486 0.920717174 0.902655678 0.920618636 1.034409828 0.908989336 1 11.24195879 -6.754158382 23.15451495 0.945992793 1.133490386 0.695408371 0.060034995 38.08728658 121120.4672 0.018005506 0.022712767 1.76E-07 6.754158382 0.187497593 VTTGVSS(ph)IAS(ph)EDS(ph)RK ddPTM_K562_Paclitaxel_30min_R1 1 VTTGVSSIASEDSRK 15 1 F8VNQ3;G3V106;Q9NT68-2;Q9NT68 F8VNQ3 TENM2 "Teneurin-2;Ten-2, soluble form;Ten-2 intracellular domain" 3 VT(0.146)T(0.167)GVS(0.531)S(0.579)IAS(0.579)EDS(0.997)RK 64.52 0.021118 0 944.08 599.91 1281.5 1060.4 648.2 750.55 658.83 1081.4 785.7 1236.5 TRUE FALSE 957.3000327 665.4102026 957.9694756 992.3906902 736.4958141 883.6495043 783.8395532 989.5283201 861.1699956 984.5006213 0.972371182 0.675886016 0.973051164 1.008014285 0.748090756 0.897561144 0.796179846 1.005106852 0.874727732 1 9.943248306 -8.876606564 1.029291331 0.990663255 0.869049597 0.0997642 0.107250995 1.160188821 2.723589172 0.099294753 0.033457381 1.33E-09 8.876606564 -0.121613657 VVDLMAHMASKE ddPTM_K562_Paclitaxel_30min_R1 2 VVDLMAHMASKE 12 1 E7EUT5;P04406-2;P04406 E7EUT5 GAPDH Glyceraldehyde-3-phosphate dehydrogenase 0 ; 134.08 0.00072975 11225400 10430.8 10394.2 15183.7 11780.2 8119 8660.1 11119.3 15697.8 11887.7 19318.9 FALSE TRUE 10576.86338 11529.07391 11350.38715 11024.6707 9224.945256 10195.84714 13229.12913 14364.17391 13029.5667 15381.69758 0.687626533 0.749531958 0.737915116 0.71673953 0.599735186 0.66285578 0.86005651 0.933848415 0.847082491 1 13.90892711 -7.873517659 4.333393441 0.914204938 0.694201875 0.804887664 0.053084664 0.102473884 3.3743899 0.024506921 0.016217758 1.34E-08 7.873517659 -0.220003063 VVDRDSEEAEIIR ddPTM_K562_Paclitaxel_30min_R1 4 VVDRDSEEAEIIR 13 1 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 ;;; 158.25 0.00091414 50855900 4199.56 4506.68 5499.5 5390.6 4307.72 3972.83 4348.1 5146.06 3974.97 5701.6 FALSE TRUE 4258.366797 4998.734563 4111.083208 5044.871043 4894.504394 4677.355619 5173.129276 4708.870082 4356.783629 4539.61079 0.938046673 1.101137255 0.905602572 1.111300346 1.078177099 1.030342872 1.139553481 1.037284979 0.959726248 1 12.1483529 -5.238683203 23.42491309 1.043488619 0.938046398 0.167160567 0.068179762 4589.185374 4723876.954 0.01659398 0.771259039 5.77E-06 5.238683203 -0.105442221 VVDRDSEEAEIIRK ddPTM_K562_Paclitaxel_30min_R1 1 VVDRDSEEAEIIRK 14 2 P09874 P09874 PARP1 Poly [ADP-ribose] polymerase 1 0 83.137 0.015118 13983000 1181.4 734.84 1801.4 1228 980.47 1027.4 918.02 1276.7 1199.3 1682.3 FALSE TRUE 1197.943245 815.0723163 1346.614291 1149.241576 1114.026613 1209.594965 1092.209503 1168.236366 1314.498124 1339.446337 0.894357028 0.60851435 1.005351431 0.857997476 0.83170679 0.903055936 0.815418634 0.872178552 0.981374235 1 10.38742107 -14.99984719 0.032520015 1.887884876 0.292467484 0.223629153 0.097238937 1828.669094 4.459011685 177.0471934 66.43021352 1.00E-15 14.99984719 -1.595417391 VVDYSQFQES(ph)DDADEDYGR ddPTM_K562_Paclitaxel_30min_R1 7 VVDYSQFQESDDADEDYGR 19 0 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 VVDYSQFQES(1)DDADEDYGR;VVDYS(0.001)QFQES(0.999)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR;VVDYSQFQES(1)DDADEDYGR 241.11 1.54E-57 865369700 12220.95 11056.59 14615.34 12546.58 10979.47 9694.5 10111.64 13374.76 8187.91 13986.47 TRUE FALSE 12392.081 12263.78589 10925.51666 11741.89852 12475.0597 11413.68346 12030.2709 12238.49066 8974.39534 11136.01974 1.112792658 1.101271925 0.981097099 1.054407121 1.120244036 1.024933839 1.080302585 1.099000446 0.805888958 1 13.44294605 -8.746490712 24.99944381 0.902944448 1.069480208 0.563308347 0.059426388 141.8968294 237304.0362 0.038692318 0.014493907 1.79E-09 8.746490712 0.16653576 VVDYSQFQES(ph)DDADEDYGRDSGPPTK ddPTM_K562_Paclitaxel_30min_R1 5 VVDYSQFQESDDADEDYGRDSGPPTK 26 1 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 VVDYS(0.001)QFQES(0.992)DDADEDY(0.002)GRDS(0.005)GPPTK;VVDY(0.001)S(0.008)QFQES(0.991)DDADEDYGRDSGPPTK;VVDY(0.006)S(0.017)QFQES(0.963)DDADEDY(0.003)GRDS(0.011)GPPT(0.001)K;VVDY(0.032)S(0.065)QFQES(0.9)DDADEDY(0.002)GRDS(0.001)GPPTK;VVDY(0.031)S(0.031)QFQES(0.938)DDADEDYGRDSGPPTK 107.56 7.05E-07 763484000 4466.34 3745.7 7386.01 5244.27 3654.06 2834.96 3443.85 5417.03 4335 5312.73 TRUE FALSE 4528.88254 4154.668193 5521.320426 4907.925995 4151.804836 3337.700351 4097.302559 4956.819489 4751.396119 4229.99271 1.070659656 0.982192755 1.305278946 1.160268192 0.981515837 0.789055816 0.968631116 1.171826958 1.12326343 1 12.04643946 -6.763731759 24.94156841 1.001619657 1.13161932 0.199345785 0.121436801 106.8330915 1162372.015 0.041354291 0.049168944 1.72E-07 6.763731759 0.129999663 VVDYSQFQES(ph)DDADEDYGRDSGPPTKK ddPTM_K562_Paclitaxel_30min_R1 2 VVDYSQFQESDDADEDYGRDSGPPTKK 27 2 Q9H1E3 Q9H1E3 NUCKS1 Nuclear ubiquitous casein and cyclin-dependent kinase substrate 1 1 VVDY(0.006)S(0.03)QFQES(0.94)DDADEDY(0.022)GRDS(0.002)GPPTKK;VVDY(0.003)S(0.015)QFQES(0.982)DDADEDYGRDSGPPTKK 111.56 7.79E-09 364700000 2396.1 1683.7 4818.4 2159.1 1923.37 1385.66 1304.38 2112.5 2410.7 3182.2 TRUE FALSE 2429.652793 1867.53206 3601.935327 2020.62499 2185.365557 1631.387345 1551.879296 1933.029939 2642.258506 2533.665893 0.958947586 0.737086948 1.421629954 0.797510435 0.862531071 0.643884164 0.612503527 0.76293798 1.042859879 1 11.30701058 -6.453675454 24.99999971 0.793335283 1.025768565 0.193894429 0.202541109 263.3408353 95132.19076 0.057270511 0.084945863 3.52E-07 6.453675454 0.232433282 VVFPPGS(ph)PIPLRR ddPTM_K562_Paclitaxel_30min_R1 1 VVFPPGSPIPLRR 13 1 A0A1B0GTU4;A0A1B0GV30 A0A1B0GTU4 1 VVFPPGS(1)PIPLRR 73.022 0.028615 5027200 468.85 518.36 661.5 561.72 366.07 497.88 579.99 475.55 344.81 554.62 TRUE FALSE 475.4153465 574.9562978 494.4961437 525.6937934 415.9349316 586.1720274 690.0400747 435.1490592 377.9305412 441.5881396 1.076603522 1.302019339 1.11981301 1.190461759 0.941906936 1.32741796 1.562632718 0.985418358 0.855843958 1 8.786557614 -8.499508697 24.87929096 0.925491585 1.214008435 0.378765595 0.159654435 723.774561 770520.6489 0.091352568 0.043425554 3.17E-09 8.499508697 0.28851685 VVGSS(ph)PGHPAVQVESHSGGQK ddPTM_K562_Paclitaxel_30min_R1 1 VVGSSPGHPAVQVESHSGGQK 21 0 Q6AI39 Q6AI39 GLTSCR1L GLTSCR1-like protein 1 VVGS(0.312)S(0.688)PGHPAVQVESHSGGQK 111.99 5.02E-05 8050400 997.78 982.45 1987.1 1333.8 942.14 772.63 849.27 1432.4 810.16 1494.1 TRUE FALSE 1011.751998 1089.717213 1485.432029 1248.256038 1070.475419 909.6450822 1010.414549 1310.708679 887.9794879 1189.6016 0.850496501 0.91603543 1.248680255 1.049305951 0.89986044 0.764663634 0.849372218 1.101804738 0.746451155 1 10.21626278 -6.783578852 10.20445589 0.890013818 1.025591678 0.158979291 0.137118241 0.651815388 289.5378037 0.043924858 0.050570525 1.65E-07 6.783578852 0.13557786 VVKETSY(ph)EMMMQCVS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 VVKETSYEMMMQCVSR 16 1 H0Y8C3;Q9NZJ7-2;Q9NZJ7 H0Y8C3 MTCH1 Mitochondrial carrier homolog 1 2 VVKET(0.201)S(0.224)Y(0.575)EMMMQCVS(1)R 48.314 0.029288 43041000 986.26 1227 1288.3 1325.1 1171.3 1153 1378.9 1475.9 999.89 1463.6 TRUE FALSE 1000.070683 1360.968009 963.0527315 1240.114017 1330.85089 1357.468361 1640.539077 1350.513083 1095.933902 1165.317517 0.858195872 1.167894578 0.826429465 1.064185511 1.142050018 1.164891407 1.407804357 1.158922837 0.940459477 1 10.18650739 -6.585168255 3.786545545 1.158195678 0.968520871 0.234120413 0.144227867 0.318817926 9.278800925 0.04408578 0.059436863 2.60E-07 6.585168255 -0.189674808 VVLDDKDYFLFR ddPTM_K562_Paclitaxel_30min_R1 1 VVLDDKDYFLFR 12 1 P61604;B8ZZ54 P61604 HSPE1 "10 kDa heat shock protein, mitochondrial" 0 141.1 0.00090167 16370000 1650.8 1652.8 2459.9 2028.4 1372.6 1440.1 1525.4 2290.2 1518.1 3398.3 FALSE TRUE 1673.916293 1833.258293 1838.867821 1898.307503 1559.571358 1695.481515 1814.836687 2095.633215 1663.920288 2705.724595 0.618657308 0.677548002 0.679621209 0.701589329 0.576396933 0.626627528 0.67073962 0.774518301 0.614962917 1 11.40179929 -15 0.336127224 4.561032659 0.650489046 0.79146967 0.052363406 168.2676415 1.437162558 429.054165 0.044021412 1.00E-15 15 -3.910543614 VVLGDGVQLPPGDYS(ph)T(ph)TPGGTLFSTTPGGTRIIYDR ddPTM_K562_Paclitaxel_30min_R1 1 VVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDR 36 1 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 VVLGDGVQLPPGDY(0.245)S(0.259)T(0.237)T(0.237)PGGT(0.237)LFS(0.237)T(0.237)T(0.237)PGGT(0.039)RIIY(0.037)DR 56.984 0.00034941 6745800 1000.3 1027.1 1280.5 1018.4 877.44 922.51 941.95 1312.6 1370.4 1328.2 TRUE FALSE 1014.307286 1139.242251 957.221938 953.0843822 996.9621832 1086.104196 1120.680095 1201.086437 1502.033043 1057.512111 0.959144842 1.0772853 0.905164043 0.901251506 0.942743041 1.027037123 1.059732634 1.135766129 1.420345949 1 10.04645847 -8.080988796 1.817791534 1.216261446 0.96369306 0.45256387 0.107406108 0.308764381 1.961524549 0.068603319 0.032188013 8.30E-09 8.080988796 -0.252568386 VVLGDGVQLPPGDYS(ph)TTPGGT(ph)LFSTTPGGTRIIYDRK ddPTM_K562_Paclitaxel_30min_R1 1 VVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRK 37 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 VVLGDGVQLPPGDY(0.232)S(0.253)T(0.253)T(0.253)PGGT(0.22)LFS(0.221)T(0.221)T(0.221)PGGT(0.065)RIIY(0.06)DRK 50.704 0.0015435 46487000 2293.5 2018.5 3741.1 2146.6 2126 1644.6 1602.9 2492.5 2773 2847.2 TRUE FALSE 2325.616076 2238.886656 2796.613036 2008.926684 2415.597193 1936.246719 1907.041907 2280.746567 3039.35904 2266.939077 1.025883801 0.987625419 1.233651607 0.886184681 1.065576582 0.854123844 0.841240917 1.006090808 1.340732563 1 11.1465299 -14.57113213 16.07374402 0.00526338 1.016604981 0 0.151670847 0 0 0 0.034931695 2.68E-15 14.57113213 1.0113416 VVLGDGVQLPPGDYS(ph)TTPGGTLFST(ph)TPGGTR ddPTM_K562_Paclitaxel_30min_R1 1 VVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 31 0 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 VVLGDGVQLPPGDY(0.115)S(0.334)T(0.305)T(0.246)PGGT(0.275)LFS(0.155)T(0.262)T(0.24)PGGT(0.069)R 55.161 0.01078 0 1526 1490 1656.1 1605 1306.1 1124.2 1542.4 1848.8 1091.7 2065.5 TRUE FALSE 1547.368708 1652.683239 1237.997073 1502.062484 1484.012932 1323.561085 1835.062348 1691.7329 1196.562663 1644.549966 0.940907081 1.004945592 0.752787752 0.913357766 0.902382392 0.804816584 1.115844691 1.028690484 0.727592768 1 10.68347713 -7.727184427 24.99953234 0.970423612 0.887775751 0.111393442 0.112653228 430.0698457 313867.7618 0.043328824 0.033560722 1.87E-08 7.727184427 -0.082647861 VVLGDGVQLPPGDYSTT(ph)PGGT(ph)LFSTTPGGTRIIYDRK ddPTM_K562_Paclitaxel_30min_R1 1 VVLGDGVQLPPGDYSTTPGGTLFSTTPGGTRIIYDRK 37 2 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 VVLGDGVQLPPGDY(0.07)S(0.075)T(0.076)T(0.318)PGGT(0.356)LFS(0.356)T(0.356)T(0.356)PGGT(0.019)RIIY(0.017)DRK 63.403 3.53E-05 35697000 3149.5 2558.7 4951.8 3168.2 2198.2 2335.5 2058.3 3387.5 3607.1 3910 TRUE FALSE 3193.602717 2838.067519 3701.656847 2965.005832 2497.632056 2749.668133 2448.85168 3099.710731 3953.578072 3113.139854 1.025846209 0.911641511 1.189042902 0.952416522 0.802287136 0.883245939 0.786617947 0.995686309 1.269964813 1 11.60415467 -8.539075239 22.03813228 1.134264281 0.934794035 0.288789166 0.123447376 79.5628048 108249.4948 0.086313167 0.032664091 2.89E-09 8.539075239 -0.199470247 VVLGDGVQLPPGDYSTT(ph)PGGTLFS(ph)TTPGGTR ddPTM_K562_Paclitaxel_30min_R1 1 VVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 31 0 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 VVLGDGVQLPPGDY(0.255)S(0.185)T(0.284)T(0.405)PGGT(0.129)LFS(0.272)T(0.213)T(0.213)PGGT(0.044)R 50.219 0.012582 6904800 1037.8 947.56 1144.1 1169.2 1022 1013.6 1123.6 1283 838.8 1589.3 TRUE FALSE 1052.332402 1051.017805 855.257805 1094.212745 1161.213703 1193.347728 1336.797234 1174.001142 919.3704879 1265.399788 0.831620498 0.83058162 0.675879523 0.864717029 0.917665479 0.943059846 1.056422838 0.927770933 0.726545473 1 10.30537754 -6.547576265 4.147393055 0.930880249 0.781895386 0.358669333 0.088948472 0.238159614 9.366280799 0.027513363 0.037713907 2.83E-07 6.547576265 -0.148984863 VVLGDGVQLPPGDYSTT(ph)PGGTLFSTT(ph)PGGTR ddPTM_K562_Paclitaxel_30min_R1 2 VVLGDGVQLPPGDYSTTPGGTLFSTTPGGTR 31 0 Q13541 Q13541 EIF4EBP1 Eukaryotic translation initiation factor 4E-binding protein 1 2 VVLGDGVQLPPGDY(0.008)S(0.035)T(0.017)T(0.94)PGGT(0.003)LFS(0.131)T(0.264)T(0.534)PGGT(0.069)R;VVLGDGVQLPPGDY(0.04)S(0.047)T(0.28)T(0.6)PGGT(0.248)LFS(0.19)T(0.19)T(0.232)PGGT(0.174)R 96.114 3.58E-10 97570000 13162 13436.8 16813.9 14925.9 12468 12078 14461.7 16959.1 9984.9 19081 TRUE FALSE 13346.30861 14903.87526 12569.02299 13968.61958 14166.35268 14219.86372 17205.73208 15518.3186 10943.99426 15192.28173 0.878492701 0.981016251 0.82732951 0.919455012 0.932470378 0.935992629 1.132531136 1.021460692 0.72036541 1 13.89105094 -7.188609183 2.629050821 0.974991039 0.90433039 0.066629265 0.103125051 0.792224394 10.74640657 0.038741119 0.037651433 6.48E-08 7.188609183 -0.070660649 VVNGAAASQPPS(ph)KR ddPTM_K562_Paclitaxel_30min_R1 2 VVNGAAASQPPSKR 14 1 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 VVNGAAAS(0.001)QPPS(0.999)KR;VVNGAAAS(0.003)QPPS(0.997)KR 88.319 0.010374 50765000 2433.3 2036.08 3572.4 2697.7 2151.68 1710.74 2142.45 3290.1 3667.1 3691.4 TRUE FALSE 2467.373707 2258.3861 2670.503437 2524.681596 2444.775244 2014.115719 2548.968703 3010.585469 4019.34134 2939.090654 0.839502417 0.768396203 0.908615539 0.859000927 0.831813487 0.685285334 0.867264404 1.024325488 1.367545889 1 11.52115414 -8.403827937 3.152554983 1.186645991 0.819530382 0.671622558 0.101916379 0.140033292 2.585141477 0.065071047 0.0263903 3.95E-09 8.403827937 -0.36711561 VVNGGVPWPSPCPS(ph)PSSRPPSR ddPTM_K562_Paclitaxel_30min_R1 2 VVNGGVPWPSPCPSPSSRPPSR 22 1 Q99700;Q99700-4;Q99700-2;H0YH87;A0A5F9ZHW5;A0A2R8Y5A6;A0A2R8Y7E6;A0A5F9ZI57;V9GY86;F8VQP2;A0A2R8YDM9;A0A2R8Y7P6;Q99700-5;F8WB06 Q99700 ATXN2 Ataxin-2 1 VVNGGVPWPS(0.001)PCPS(0.701)PS(0.144)S(0.144)RPPS(0.01)R;VVNGGVPWPS(0.001)PCPS(0.439)PS(0.439)S(0.091)RPPS(0.031)R 104.26 0.00011674 43630000 1852.48 1583.68 2218.34 2503.7 1994.94 2156.1 1780.66 2110.89 1870.38 2169.08 TRUE FALSE 1878.420435 1756.591538 1658.292631 2343.123888 2266.684603 2538.454062 2118.530939 1931.556719 2050.038356 1727.020305 1.087665518 1.01712269 0.960204478 1.356743682 1.312482891 1.469846101 1.226697181 1.118433126 1.187037784 1 10.75406933 -6.255472064 24.96188708 1.255882567 1.021210067 0.381259012 0.125407863 486.4465014 2034848.337 0.035707051 0.059836873 5.55E-07 6.255472064 -0.2346725 VVNITSPGHDAS(ph)SRSPTTTASVSATAAPR ddPTM_K562_Paclitaxel_30min_R1 2 VVNITSPGHDASSRSPTTTASVSATAAPR 29 1 Q15723-2;Q15723-3;Q15723-1;Q15723;Q15723-4 Q15723-2 ELF2 ETS-related transcription factor Elf-2 1 VVNITSPGHDAS(0.491)S(0.491)RS(0.011)PT(0.002)T(0.003)TASVSATAAPR;VVNITS(0.001)PGHDAS(0.237)S(0.237)RS(0.237)PT(0.028)T(0.033)T(0.033)AS(0.042)VS(0.13)AT(0.023)AAPR 99.722 2.20E-08 76690000 2033.55 1854.63 2210.67 2310.64 1734.14 1832.03 1652.24 2150.7 2326.24 2106.53 TRUE FALSE 2062.025974 2057.124775 1652.559017 2162.445892 1970.359227 2156.914798 1965.743915 1967.984611 2549.685746 1677.21803 1.229432273 1.226510054 0.98529767 1.289305179 1.174778229 1.2860074 1.172026463 1.173362423 1.520187418 1 10.71185453 VVNTDHGS(ph)PEQLQIPVTDSGR ddPTM_K562_Paclitaxel_30min_R1 2 VVNTDHGSPEQLQIPVTDSGR 21 0 Q6IQ49-3;Q6IQ49-2;Q6IQ49 Q6IQ49-3 SDE2 Protein SDE2 homolog 1 VVNTDHGS(1)PEQLQIPVTDSGR;VVNT(0.007)DHGS(0.993)PEQLQIPVTDSGR 150.73 5.92E-18 308003000 3423.95 2995.62 3903 3446.1 3160.95 2926.9 2636.82 3339.7 2800.3 3649.7 TRUE FALSE 3471.895864 3322.691922 2917.639378 3225.08257 3591.524905 3445.944619 3137.14283 3055.971639 3069.281327 2905.889137 1.194779188 1.143433822 1.004043596 1.109843638 1.235946981 1.185848619 1.079581045 1.051647704 1.05622795 1 11.50476395 -7.965174125 4.91001149 1.044266131 1.14153802 0.405641467 0.059876366 0.240081899 14.07757302 0.029510313 0.019010137 1.08E-08 7.965174125 0.097271889 VVPEDGS(ph)PEKR ddPTM_K562_Paclitaxel_30min_R1 3 VVPEDGSPEKR 11 1 Q02040 Q02040 AKAP17A A-kinase anchor protein 17A 1 VVPEDGS(1)PEKR;VVPEDGS(1)PEKR;VVPEDGS(1)PEKR 79.639 0.022401 140057000 8974.7 7844 16173.7 10189.6 7182.9 7090.5 6911.7 9137.9 9394.5 11790 TRUE FALSE 9100.373489 8700.434447 12090.4494 9536.084663 8161.332588 8347.900619 8223.158994 8361.578358 10296.8837 9387.191528 0.969445809 0.926841049 1.287973018 1.015861308 0.869411534 0.889286278 0.875997786 0.890743342 1.09690781 1 13.19647788 -6.542102322 13.20963058 0.927630699 1.065275756 0.207507331 0.109872707 1.662269815 1138.858072 0.033201177 0.043025338 2.87E-07 6.542102322 0.137645058 VVPGQFDDADS(ph)SDSENR ddPTM_K562_Paclitaxel_30min_R1 2 VVPGQFDDADSSDSENR 17 0 E9PFQ8;Q9BRS2 E9PFQ8 RIOK1 Serine/threonine-protein kinase RIO1 1 VVPGQFDDADS(0.982)S(0.018)DS(0.001)ENR;VVPGQFDDADS(0.5)S(0.5)DSENR 256.33 2.05E-78 59789000 3602.46 3306.6 4301.1 3462.83 3341.56 2635.45 2973.9 3735.78 2716.46 3843.3 TRUE FALSE 3652.905555 3667.62577 3215.23411 3240.739583 3796.737045 3102.810054 3538.182 3418.402171 2977.38812 3060.03335 1.193746975 1.19855745 1.05071865 1.059053681 1.240750218 1.013979163 1.156256026 1.117112717 0.972992049 1 11.57933166 -2 0.066091227 0.847743181 1.679055369 0.329094164 0.072988605 362.7237015 1.782599696 4.151141585 28.38028284 0.01 2 0.831312188 VVPGQFDDADSS(ph)DSENR ddPTM_K562_Paclitaxel_30min_R1 2 VVPGQFDDADSSDSENR 17 0 E9PFQ8;Q9BRS2 E9PFQ8 RIOK1 Serine/threonine-protein kinase RIO1 1 VVPGQFDDADS(0.226)S(0.774)DSENR;VVPGQFDDADS(0.063)S(0.935)DS(0.002)ENR 308.24 8.62E-203 57273500 2389.5 2032.79 3401.1 2459.9 2305.8 1873.06 2285.51 2739.2 1720.62 3085.2 TRUE FALSE 2422.960372 2254.736887 2542.450241 2302.133024 2619.888998 2205.220892 2719.173591 2506.487862 1885.893239 2456.434546 0.986372861 0.917890074 1.035016481 0.937184761 1.066541342 0.897732405 1.106959514 1.020376409 0.767736002 1 11.26235008 -8.721518914 24.9998715 0.883866729 0.995518247 0.234464577 0.081049033 179.8722469 112643.7404 0.051038652 0.019290224 1.90E-09 8.721518914 0.111651518 VVPGQFDDADSS(ph)DSENRDLK ddPTM_K562_Paclitaxel_30min_R1 3 VVPGQFDDADSSDSENRDLK 20 1 E9PFQ8;Q9BRS2 E9PFQ8 RIOK1 Serine/threonine-protein kinase RIO1 1 VVPGQFDDADS(0.365)S(0.628)DS(0.007)ENRDLK;VVPGQFDDADS(0.216)S(0.784)DSENRDLK;VVPGQFDDADS(0.224)S(0.729)DS(0.047)ENRDLK 141.36 2.10E-13 390941000 4856.4 4428.22 9242.4 5599.1 3969.66 3603.71 3425.28 5238.5 5689.4 6149.6 TRUE FALSE 4924.404583 4911.708035 6909.041811 5239.998787 4510.394899 4242.77737 4075.208999 4793.456727 6235.892291 4896.308144 1.005738291 1.003145205 1.411071691 1.070193834 0.921182811 0.866525808 0.832302396 0.978994088 1.273590654 1 12.25747864 -6.533328958 13.15240299 0.967565819 1.145344291 0.181874975 0.153561706 1.247773338 1562.315624 0.047493079 0.061961745 2.93E-07 6.533328958 0.177778472 VVPQQITHT(ph)SPR ddPTM_K562_Paclitaxel_30min_R1 3 VVPQQITHTSPR 12 0 H7BXF5;A0A2R8YDB8;Q9H0E3;Q9H0E3-3 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 1 VVPQQITHT(0.5)S(0.5)PR;VVPQQIT(0.001)HT(0.5)S(0.5)PR;VVPQQITHT(0.5)S(0.5)PR 206.67 7.23E-10 100913000 8301.9 6854.1 9558.7 8356.7 6856 7200.4 6737.8 8013.1 7186.6 8821 TRUE FALSE 8418.152214 7602.453817 7145.487964 7820.738665 7789.903273 8477.289841 8016.262376 7332.337139 7876.905041 7023.275358 1.198607741 1.082465578 1.017401084 1.113545784 1.109155327 1.207027976 1.141385175 1.044005363 1.121542961 1 12.77792828 -11.19077588 4.088645674 0.999944793 1.112364625 0.270593647 0.056499708 44368812.74 2.372166017 23060.70805 0.014328914 6.45E-12 11.19077588 0.112419833 VVPQQITHTS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 VVPQQITHTSPR 12 0 H7BXF5;A0A2R8YDB8;Q9H0E3;Q9H0E3-3 H7BXF5 SAP130 Histone deacetylase complex subunit SAP130 1 VVPQQITHT(0.232)S(0.767)PR 139.21 8.19E-05 105830000 2626.1 2750.8 3453.8 3033.6 2553.3 2370.8 2155.1 2832.9 2984.9 3285.7 TRUE FALSE 2662.873502 3051.141647 2581.845474 2839.038474 2901.102688 2791.228092 2564.018975 2592.227463 3271.612982 2616.072536 1.017889781 1.166306211 0.986916623 1.085229264 1.108953459 1.066953631 0.980102401 0.990885163 1.250581907 1 11.35318683 -7.534610006 24.8855518 1.050189274 1.075512273 0.007718289 0.084694233 1247.48217 2646252.651 0.0316136 0.024514975 2.92E-08 7.534610006 0.025322999 VVPSFLPVDQGGS(ph)LVGR ddPTM_K562_Paclitaxel_30min_R1 2 VVPSFLPVDQGGSLVGR 17 0 Q14126 Q14126 DSG2 Desmoglein-2 1 VVPSFLPVDQGGS(1)LVGR;VVPSFLPVDQGGS(1)LVGR 180.78 2.58E-10 30894000 2539 2320.9 2334.4 2464.2 1884.15 1915.48 2550.4 3351.7 3184.5 4068.8 TRUE FALSE 2574.553833 2574.303711 1745.051849 2306.157241 2140.803129 2255.163483 3034.325086 3066.952164 3490.385454 3239.576327 0.794719301 0.794642092 0.538666687 0.711870013 0.660828119 0.69612914 0.936642567 0.94671397 1.077420348 1 11.66158943 -7.846555063 2.982092939 1.002627149 0.693031114 0.788070059 0.074366065 0.12246435 2.188937164 0.036086817 0.023304686 1.42E-08 7.846555063 -0.309596034 VVQGS(ph)PEVPGITVR ddPTM_K562_Paclitaxel_30min_R1 1 VVQGSPEVPGITVR 14 0 Q8N201 Q8N201 INTS1 Integrator complex subunit 1 1 VVQGS(0.993)PEVPGIT(0.007)VR 105.17 0.0045102 19448000 1254.6 1255.7 1507 1094.8 1034.4 1128.9 1206.1 1161.7 872.52 1553.3 TRUE FALSE 1272.168271 1392.801573 1126.539212 1024.584428 1175.302793 1329.094564 1434.951179 1063.006334 956.3294445 1236.736607 1.02864932 1.126190948 0.910896633 0.828458074 0.95032587 1.074678761 1.16027226 0.859525244 0.773268486 1 10.27232256 -8.396922008 19.28254 0.862170735 1.005336176 0.242856754 0.10681966 4.485823742 668.1363137 0.062881708 0.030206956 4.01E-09 8.396922008 0.143165441 VVQHALPTPRRGALTMSLNSSLSCR ddPTM_K562_Paclitaxel_30min_R1 1 VVQHALPTPRRGALTMSLNSSLSCR 25 2 A0A0A0MQW8 A0A0A0MQW8 GPR161 0 56.29 0.014231 6485400 945.57 845.8 1565.1 957.35 1008.9 717.87 730.77 746.73 784.1 912.91 FALSE TRUE 958.8108973 938.1473043 1169.971148 895.9498559 1146.329261 845.1741651 869.4297926 683.2906256 859.4163085 726.8584409 1.31911641 1.290687776 1.609627243 1.232633214 1.577101119 1.162776846 1.196147343 0.94006011 1.182370954 1 9.50553061 -7.572596847 2.365743927 1.064994557 1.400343565 0.569119852 0.133994534 0.211903149 2.401402169 0.055088093 0.041451814 2.68E-08 7.572596847 0.335349007 VVSISSEHLEPIT(ph)PTKNNK ddPTM_K562_Paclitaxel_30min_R1 1 VVSISSEHLEPITPTKNNK 19 1 O00267-2;O00267 O00267-2 SUPT5H Transcription elongation factor SPT5 1 VVSISSEHLEPIT(0.938)PT(0.062)KNNK 84.195 0.025094 15999000 1275.6 1249.8 2427.5 1651.8 1331.9 1178.3 993.88 1499.2 1163.1 1500.7 TRUE FALSE 1293.462336 1386.257391 1814.647602 1545.860941 1513.327329 1387.254961 1182.463542 1371.833602 1274.820952 1194.856516 1.082525239 1.160187329 1.518715911 1.293762824 1.266534775 1.161022216 0.989628065 1.148115764 1.066923881 1 10.22262167 -7.449499596 3.223630214 1.063482679 1.27424475 0.437292544 0.112917496 0.268086368 5.425114841 0.046560825 0.038916792 3.55E-08 7.449499596 0.210762071 VVSQSQPGS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 VVSQSQPGSR 10 0 Q7Z460-4 Q7Z460-4 CLASP1 CLIP-associating protein 1 1 VVSQSQPGS(1)R 93.839 0.014279 6544800 843.05 844.03 725.58 630.21 628.5 580.63 714.75 596.59 617.77 966.54 TRUE FALSE 854.855301 936.1840497 542.3983551 589.7911513 714.1123406 683.5965781 850.3700813 545.9059557 677.1095688 769.5586175 1.110838449 1.21652078 0.704817467 0.766401854 0.927950548 0.888296957 1.105010147 0.709375405 0.879867438 1 9.587887411 -5.747554215 24.99232739 0.869364078 1.163679759 0.48221197 0.1205627 195.9634695 352714.6453 0.031072504 0.081302151 1.79E-06 5.747554215 0.294315681 VVSS(ph)PPCAAAVSR ddPTM_K562_Paclitaxel_30min_R1 1 VVSSPPCAAAVSR 13 0 P12755 P12755 SKI Ski oncogene 1 VVS(0.036)S(0.96)PPCAAAVS(0.004)R 98.368 0.009321 31074000 1542.8 1923.1 2302.4 1454.2 1915.7 1512.8 1550.4 1758 1458 1813.2 TRUE FALSE 1564.40396 2133.070562 1721.130644 1360.934121 2176.650773 1781.073839 1844.580306 1608.646927 1598.047415 1443.668845 1.083630755 1.477534526 1.192192136 0.942691342 1.50772165 1.233713566 1.277703203 1.114276957 1.10693489 1 10.49552413 -8.641074642 1.607483694 1.018579917 1.250241555 0.203801323 0.158193424 0.600199605 2.860976926 0.144543748 0.045081039 2.29E-09 8.641074642 0.231661638 VVT(ph)DTDETELAR ddPTM_K562_Paclitaxel_30min_R1 1 VVTDTDETELAR 12 0 P05198 P05198 EIF2S1 Eukaryotic translation initiation factor 2 subunit 1 1 VVT(0.896)DT(0.099)DET(0.005)ELAR 98.368 0.025349 8837200 608.98 458.98 753.8 713.77 459.16 589.97 528.91 523.81 777.95 715.29 TRUE FALSE 617.5075989 509.0929886 563.4938671 667.9919869 521.7053656 694.5928959 629.2679114 479.309071 852.6755735 569.5135054 1.08427209 0.893908544 0.98943021 1.17291685 0.916054423 1.219624977 1.104921842 0.841611422 1.497199918 1 9.153586244 -6.645248478 0.82576726 1.117820671 0.98077289 0.074043179 0.176156024 2.003464971 2.877162035 0.087394634 0.171035635 2.26E-07 6.645248478 -0.137047781 VVTVSSRS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 2 VVTVSSRSPR 10 1 Q96RY5 Q96RY5 CRAMP1L Protein cramped-like 1 VVTVS(0.002)S(0.016)RS(0.982)PR;VVTVSS(0.004)RS(0.996)PR 148.78 0.00023578 9918600 4291.5 3801.9 5264.9 4513.4 3743.2 3569.3 3679.4 4488.8 4159.6 4731.2 TRUE FALSE 4351.59424 4217.004299 3935.71088 4223.930725 4253.087213 4202.26524 4377.546942 4107.448422 4559.148166 3766.978843 1.155194765 1.119465884 1.044792404 1.121304605 1.129044624 1.115553183 1.162084292 1.090382663 1.210293011 1 11.87919222 -5.281832454 5.480166669 1.113666736 1.156263951 0.054165673 0.05495525 0.462453905 48.24528234 0.012905679 0.068200287 5.23E-06 5.281832454 0.042597215 VVVLESRPTDNPTANSNLYILAGHENS(ph)Y ddPTM_K562_Paclitaxel_30min_R1 1 VVVLESRPTDNPTANSNLYILAGHENSY 28 1 Q8IVH8-2;F5H5A3;Q8IVH8-3;Q8IVH8 Q8IVH8-2 MAP4K3 Mitogen-activated protein kinase kinase kinase kinase 3;Mitogen-activated protein kinase kinase kinase kinase 1 VVVLESRPTDNPTANSNLY(0.002)ILAGHENS(0.551)Y(0.447) 105.72 2.84E-09 8759500 449.45 481.4 667.29 663.28 489.35 371.01 498.7 755.48 632.62 802.96 TRUE FALSE 455.7436867 533.96088 498.8243866 620.7401895 556.0077548 436.8034143 593.3257216 691.2972584 693.3859776 639.3163112 0.712861034 0.835206095 0.780246613 0.97094377 0.869691176 0.68323521 0.928062856 1.081307087 1.084574201 1 9.320386092 -8.042662235 4.534464513 1.056974059 0.817368567 0.661901017 0.078859719 0.135243733 6.216612676 0.039102678 0.022823538 9.06E-09 8.042662235 -0.239605492 VVVS(ph)PTK ddPTM_K562_Paclitaxel_30min_R1 1 VVVSPTK 7 0 C9JYW2;C9JLB1;C9J1H7;C9JWL1;P19338 C9JYW2 NCL Nucleolin 1 VVVS(0.995)PT(0.005)K 101.46 0.0096121 282610000 4158.2 3306.8 7310.4 5017.3 3908.4 2926.9 2953.4 4354.1 3897.9 4731.6 TRUE FALSE 4216.427629 3667.847607 5464.799106 4695.512835 4440.79025 3445.944619 3513.792232 3984.192028 4272.310711 3767.297323 1.119218174 0.97360184 1.450588748 1.246387644 1.1787735 0.914699405 0.93270903 1.057573025 1.134051907 1 11.87931418 -7.159679682 6.590494554 1.007171925 1.200601776 0.357016247 0.124784181 0.30210296 16.77357348 0.044252994 0.044297061 6.92E-08 7.159679682 0.193429852 VVVTT(ph)PLHR ddPTM_K562_Paclitaxel_30min_R1 1 VVVTTPLHR 9 0 P10244-2;P10244 P10244-2 MYBL2 Myb-related protein B 1 VVVT(0.01)T(0.99)PLHR 96.015 0.013304 5204900 1718.2 1517.1 1744.1 1439.5 1083.7 1470.1 1612.1 1881 1293.6 2285.5 TRUE FALSE 1742.260101 1682.742109 1303.780384 1347.176913 1231.318287 1730.801594 1917.987559 1721.197309 1417.85606 1819.713845 0.957436305 0.924728969 0.716475498 0.740323494 0.676654898 0.951139432 1.054005037 0.945861523 0.779164297 1 10.82949589 -7.305574748 23.58883774 0.94939872 0.801576963 0.31959211 0.104190498 316.4458795 169128.0144 0.039812017 0.035111197 4.95E-08 7.305574748 -0.147821757 VWLDPNETNEIANANSR ddPTM_K562_Paclitaxel_30min_R1 1 VWLDPNETNEIANANSR 17 0 J3QR09;J3KTE4;P84098 J3QR09 RPL19 Ribosomal protein L19;60S ribosomal protein L19 0 80.905 0.024182 0 487.55 456.67 820.3 582.01 553.04 449.42 476.77 738.1 452.08 730.4 FALSE TRUE 494.3772042 506.530775 613.2051197 544.6824836 628.373411 529.1183268 567.2346186 675.3937979 495.5043039 581.5440791 0.850111319 0.871010115 1.054443062 0.936614271 1.080525851 0.909850768 0.975394023 1.161380233 0.852049435 1 9.183744737 -5.691522913 7.381938077 0.998966828 0.857737138 0.295451822 0.083816335 0.261831256 23.08620356 0.02008147 0.053530894 2.03E-06 5.691522913 -0.14122969 VY(ph)ENVGLMQQQK ddPTM_K562_Paclitaxel_30min_R1 2 VYENVGLMQQQK 12 0 Q06124;Q06124-1 Q06124 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 1 VY(1)ENVGLMQQQK;VY(1)ENVGLMQQQK 199.68 5.38E-06 23128000 3244.3 2814.5 6075.9 3807.6 2704.4 1868.38 2123.3 3891.3 2434.1 4594.6 TRUE FALSE 3289.73021 3121.796628 4541.963899 3563.397578 3072.785066 2199.71096 2526.185091 3560.709776 2667.906181 3658.217998 0.899271233 0.85336539 1.24157825 0.974080161 0.83996773 0.601306691 0.690550725 0.973345432 0.729291197 1 11.83692533 -6.803646256 4.172367337 0.784694414 1.001833902 0.275396719 0.14784581 0.268827559 9.962694468 0.047808669 0.056813015 1.57E-07 6.803646256 0.217139488 VY(ph)RNSWEQT(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 VYRNSWEQTR 10 1 A0A0A0MRM2;Q86VF7-4;Q86VF7-3;Q86VF7;Q86VF7-2 A0A0A0MRM2 NRAP Nebulin-related-anchoring protein 2 VY(0.838)RNS(0.163)WEQT(1)R 69.65 0.028559 0 805.9 668.99 875.33 550.98 625.97 522.83 393.34 582.07 1055.5 778.42 TRUE FALSE 817.1850864 742.0325906 654.3421156 515.6426089 711.2377118 615.5465596 467.9742116 532.6195203 1156.885491 619.7775767 1.318513475 1.197256271 1.055769263 0.831980098 1.147569287 0.99317333 0.755067994 0.85937204 1.866613983 1 9.27560675 -12.24327533 0.004959445 0.000137377 2.102412128 0 0.303955944 671798.726 433.1092939 95864.16036 87865.82111 5.71E-13 12.24327533 2.102274751 VY(ph)T(ph)HEVVTLWYR ddPTM_K562_Paclitaxel_30min_R1 1 VYTHEVVTLWYR 12 0 A0A087WZZ9;P06493;E5RIU6 A0A087WZZ9 CDK1 Cyclin-dependent kinase 1 2 VY(1)T(1)HEVVTLWYR 97.734 0.028905 136490000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 VY(ph)VAMVT(ph)DY(ph)GAFIK ddPTM_K562_Paclitaxel_30min_R1 1 VYVAMVTDYGAFIK 14 0 A0A087WYF0;Q9NP64-3 A0A087WYF0 ZCCHC17 3 VY(1)VAMVT(1)DY(1)GAFIK 52.112 0.027457 43004000 4247.3 3397.6 7866.8 5079.7 3834.8 3764.2 2291.7 3187.8 3611.3 3175.1 TRUE FALSE 4306.775304 3768.561458 5880.729045 4753.910778 4357.164684 4431.728018 2726.538112 2916.976492 3958.181501 2528.012877 1.703620794 1.490720831 2.326225906 1.880493102 1.7235532 1.753048039 1.078530152 1.153861406 1.565728378 1 11.3037881 -7.700269092 6.065432647 1.213109028 1.82560579 0.606716284 0.241998285 0.145554503 10.40782925 0.097233458 0.074087161 1.99E-08 7.700269092 0.612496762 VYFQS(ph)PPGAAGEGPGGADDEGPVRR ddPTM_K562_Paclitaxel_30min_R1 2 VYFQSPPGAAGEGPGGADDEGPVRR 25 1 Q96C90 Q96C90 PPP1R14B Protein phosphatase 1 regulatory subunit 14B 1 VY(0.002)FQS(0.998)PPGAAGEGPGGADDEGPVRR;VY(0.002)FQS(0.998)PPGAAGEGPGGADDEGPVRR 59.873 0.0049848 25380000 1366.42 973.16 1488.62 1496.77 1126.3 1059.53 1360.23 1330.26 1318.63 1462.53 TRUE FALSE 1385.554096 1079.4129 1112.79947 1400.773871 1279.721128 1247.422769 1618.326542 1217.24611 1445.290303 1164.465583 1.189862642 0.926959899 0.955631052 1.202932823 1.098977202 1.071240565 1.389759015 1.045325965 1.241161889 1 10.18545228 -6.264453484 24.95433456 1.156395631 1.014432067 0.175772792 0.123708794 390.0266562 3229113.737 0.033268117 0.051826571 5.44E-07 6.264453484 -0.141963564 VYLYSSHPGQSDLTVPNS(ph)PPTHDPGLQPHPR ddPTM_K562_Paclitaxel_30min_R1 1 VYLYSSHPGQSDLTVPNSPPTHDPGLQPHPR 31 0 I3L3Y0;Q2KHM9 I3L3Y0 KIAA0753 Uncharacterized protein KIAA0753 1 VYLYSSHPGQSDLT(0.002)VPNS(0.63)PPT(0.368)HDPGLQPHPR 103.04 3.14E-12 17445000 995.25 918.18 761.25 700.38 704.66 803.77 930.09 1076.5 522.7 893.08 TRUE FALSE 1009.186571 1018.429997 569.0630225 655.4607616 800.646622 946.307324 1106.569722 985.0446057 572.9076705 711.0698058 1.419251053 1.432250377 0.800291361 0.921795239 1.125974715 1.330821976 1.556204065 1.385299443 0.805698211 1 9.473847386 -7.237434127 20.84637106 1.260973348 1.125167907 0.004127 0.266565179 351.1438562 304933.3049 0.09387958 0.093763858 5.79E-08 7.237434127 -0.13580544 VYLYSSHPGQSDLTVPNSPPT(ph)HDPGLQPHPR ddPTM_K562_Paclitaxel_30min_R1 1 VYLYSSHPGQSDLTVPNSPPTHDPGLQPHPR 31 0 I3L3Y0;Q2KHM9 I3L3Y0 KIAA0753 Uncharacterized protein KIAA0753 1 VYLYSSHPGQSDLT(0.002)VPNS(0.499)PPT(0.5)HDPGLQPHPR 89.891 1.75E-09 23809000 1144.9 1371.1 1191 1287.7 1373.3 977.08 1275.2 1255.9 1265.5 1000.2 TRUE FALSE 1160.932132 1520.801335 890.3173199 1205.112686 1560.36671 1150.351419 1517.162543 1149.203456 1387.056929 796.358691 1.457800543 1.9096939 1.117985312 1.513278751 1.959376758 1.444514177 1.905124613 1.443072662 1.74174897 1 9.637274577 -11.27963989 5.808361118 0.999960018 1.61090686 0.34155928 0.254202281 0.000126268 1.57E-05 0.236136047 0.057267672 5.25E-12 11.27963989 0.610946842 VYQWDDPDPR ddPTM_K562_Paclitaxel_30min_R1 3 VYQWDDPDPR 10 0 A0A0U1RQF0;P49327 A0A0U1RQF0 FASN Fatty acid synthase;[Acyl-carrier-protein] S-acetyltransferase;[Acyl-carrier-protein] S-malonyltransferase;3-oxoacyl-[acyl-carrier-protein] synthase;3-oxoacyl-[acyl-carrier-protein] reductase;3-hydroxyacyl-[acyl-carrier-protein] dehydratase;Enoyl-[acyl-carrier-protein] reductase;Oleoyl-[acyl-carrier-protein] hydrolase 0 ;; 137.05 0.0069541 75868000 7660.9 7335 9522.7 8910.6 7636.4 7493.1 7024 8687.1 8031.5 9163.3 FALSE TRUE 7768.176236 8135.860105 7118.57661 8339.113998 8676.606965 8821.896077 8356.767332 7949.076632 8802.961461 7295.81443 1.064744219 1.115140768 0.975706918 1.14299974 1.189258177 1.209172213 1.145419392 1.089539312 1.206576941 1 12.83285332 -6.431823561 12.05530781 1.149827458 1.058250828 0.261753979 0.066702076 1.063014247 137.7141181 0.018053993 0.026778838 3.70E-07 6.431823561 -0.09157663 VYSLDDIRR ddPTM_K562_Paclitaxel_30min_R1 2 VYSLDDIRR 9 1 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 0 ; 130.56 0.00093186 35222000 6838.3 6856.9 7513.8 7043.5 6248.3 6322.6 6948 7518.2 6307.2 8353.3 FALSE TRUE 6934.057298 7605.559531 5616.84826 6591.761436 7099.424245 7443.824336 8266.346729 6879.481983 6913.034741 6650.892875 1.0425754 1.143539623 0.844525444 0.991109248 1.067439271 1.119221806 1.242892779 1.034369687 1.039414537 1 12.69933232 -6.912351589 4.337110148 1.098599199 1.004351111 0.144206011 0.092319077 0.401878629 13.94762046 0.030812617 0.035124413 1.22E-07 6.912351589 -0.094248088 VYSS(ph)SEFLAVQPTPTFAER ddPTM_K562_Paclitaxel_30min_R1 2 VYSSSEFLAVQPTPTFAER 19 0 O60307;V9GYV0 O60307 MAST3 Microtubule-associated serine/threonine-protein kinase 3 1 VYS(0.189)S(0.8)S(0.011)EFLAVQPTPTFAER;VYS(0.155)S(0.622)S(0.198)EFLAVQPT(0.012)PT(0.012)FAER 109.67 0.0004503 33027000 1473.29 1501.45 2053.62 1927.62 1566.01 1411.22 1207.72 1573.91 1852.29 1702.96 TRUE FALSE 1493.920605 1665.383389 1535.158232 1803.991081 1779.327075 1661.480052 1436.878565 1440.196521 2030.210731 1355.895817 1.101796013 1.228253209 1.132209579 1.330479125 1.312288933 1.225374421 1.059726379 1.062173438 1.497320594 1 10.40503062 -7.585592065 24.99988559 1.157495165 1.227186514 0.049716381 0.141981455 232.1092918 92524.40605 0.053759931 0.041642264 2.60E-08 7.585592065 0.069691348 VYTY(ph)IQSR ddPTM_K562_Paclitaxel_30min_R1 2 VYTYIQSR 8 0 Q92630;A0A0A0MTH5;Q92630-2;Q9NR20-3;Q9NR20-4;Q9NR20-5;Q9NR20-2;Q9NR20 Q92630;Q9NR20-5 DYRK2;DYRK4 Dual specificity tyrosine-phosphorylation-regulated kinase 2;Dual specificity tyrosine-phosphorylation-regulated kinase 4 1 VY(0.001)T(0.077)Y(0.922)IQSR;VY(0.003)T(0.221)Y(0.776)IQSR 117.81 0.0088324 69079000 1624.32 1511.77 1745.94 1540.87 1582.63 1584.59 1283.63 1458.66 1423.98 1923.92 TRUE FALSE 1647.065491 1676.830161 1305.155853 1442.045495 1798.211 1865.594788 1527.192092 1334.737728 1560.759642 1531.824048 1.075231515 1.094662382 0.852027265 0.94139108 1.173901795 1.217891043 0.996976182 0.8713388 1.018889633 1 10.58103488 -7.994551035 24.99960442 0.953900006 1.055923537 0.146334024 0.104824819 295.2215817 1354457.802 0.048769971 0.032763745 1.01E-08 7.994551035 0.102023531 VYYTAGYNS(ph)PVK ddPTM_K562_Paclitaxel_30min_R1 2 VYYTAGYNSPVK 12 0 Q9Y5Z4-2;Q9Y5Z4 Q9Y5Z4-2 HEBP2 Heme-binding protein 2 1 VYYTAGYNS(1)PVK;VYYTAGYNS(1)PVK 150.16 0.00067998 15158900 2423.53 2342.2 3644.2 2732.4 1786.09 2068.64 2452.85 3778.2 2075.7 5319.2 TRUE FALSE 2457.466897 2597.929317 2724.176639 2557.156094 2029.385697 2435.484259 2918.265483 3457.218327 2275.080259 4235.14412 0.58025579 0.613421703 0.643231154 0.603794351 0.479177482 0.575065261 0.689059309 0.816316571 0.537190753 1 12.04819535 -11.65816581 0.292942981 1.332979033 0.577288939 0.65542753 0.084546888 15.75703297 0.827659929 3.853449402 0.099833533 2.20E-12 11.65816581 -0.755690095 WAAHGAS(ph)PEDFSLTLGAR ddPTM_K562_Paclitaxel_30min_R1 2 WAAHGASPEDFSLTLGAR 18 0 Q86UU1-3;Q86UU1-2;Q86UU1 Q86UU1-3 PHLDB1 Pleckstrin homology-like domain family B member 1 1 WAAHGAS(1)PEDFSLTLGAR;WAAHGAS(1)PEDFSLTLGAR 126.25 2.87E-06 16615500 2236.8 2222.38 2618.86 2224.68 2023.58 2065.02 2387.21 2715.57 2489.15 3260.1 TRUE FALSE 2268.122101 2465.026964 1957.696403 2081.998982 2299.225855 2431.222303 2840.170635 2484.865378 2728.243979 2595.68983 0.873803208 0.949661602 0.754210453 0.802098524 0.885786055 0.93663822 1.094187218 0.957304432 1.051067022 1 11.34190228 -7.399967524 2.649210274 1.021779929 0.848070339 0.652442933 0.058972328 0.185166642 2.529842458 0.024005846 0.020381159 3.98E-08 7.399967524 -0.17370959 WAHDKFSGEEGEIEDDES(ph)GTENREEKDNIQPTTE ddPTM_K562_Paclitaxel_30min_R1 2 WAHDKFSGEEGEIEDDESGTENREEKDNIQPTTE 34 3 Q9Y2W1 Q9Y2W1 THRAP3 Thyroid hormone receptor-associated protein 3 1 WAHDKFSGEEGEIEDDES(0.498)GT(0.498)ENREEKDNIQPT(0.003)TE;WAHDKFS(0.001)GEEGEIEDDES(0.693)GT(0.283)ENREEKDNIQPT(0.021)T(0.002)E 54.732 0.0028685 48182000 1230.47 759.54 2409.3 1354.17 808.16 725.91 634.22 1147.41 1264.85 1601 TRUE FALSE 1247.700376 842.4691458 1801.042417 1267.319597 918.2450743 854.6399462 754.5599341 1049.930359 1386.344494 1274.715321 0.978807076 0.66090768 1.412897756 0.994198137 0.720353054 0.670455538 0.591943881 0.823658696 1.087571845 1 10.31595937 -6.711599337 7.994074479 0.78854236 1.016449486 0.155229868 0.218632421 0.438526144 61.51143352 0.066882846 0.086008137 1.94E-07 6.711599337 0.227907126 WDAPDDELDNDNSS(ph)AR ddPTM_K562_Paclitaxel_30min_R1 1 WDAPDDELDNDNSSAR 16 0 P11277;P11277-3;P11277-2 P11277 SPTB "Spectrin beta chain, erythrocytic" 1 WDAPDDELDNDNS(0.247)S(0.753)AR 89.358 0.011135 7727300 1281.2 965.41 1470.2 1032.8 1097.4 945.07 1187.8 1318.7 1244.7 1905.8 TRUE FALSE 1299.140753 1070.816729 1099.029827 966.5608306 1246.884459 1112.664895 1413.178849 1206.668204 1364.258996 1517.396914 0.856164093 0.70569323 0.72428632 0.636986158 0.821725975 0.733272148 0.931317862 0.795222524 0.899078536 1 10.56738279 -8.5505955 0.557977645 0.993639744 0.730237434 0.546281201 0.072323964 0.597879781 0.437831223 0.072562825 0.039098395 2.81E-09 8.5505955 -0.263402311 WDGS(ph)EEDEDNSK ddPTM_K562_Paclitaxel_30min_R1 6 WDGSEEDEDNSK 12 0 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 WDGS(1)EEDEDNSK;WDGS(1)EEDEDNSK;WDGS(1)EEDEDNSK;WDGS(1)EEDEDNSK;WDGS(1)EEDEDNSK;WDGS(1)EEDEDNSK 264.29 7.54E-84 526199000 20891.2 16500 40558.1 24011.2 17006 15233.6 14850 22547.2 17922.9 26644.2 TRUE FALSE 21183.74125 18301.5258 30318.70604 22471.2291 19322.50511 17935.06507 17667.70998 20631.67462 19644.47463 21214.09741 0.998569057 0.862705843 1.42917728 1.059259259 0.910833242 0.845431447 0.832828738 0.972545483 0.92601039 1 14.37273568 -6.72204603 5.073118891 0.905117303 1.098818171 0.26557964 0.140797939 0.261311302 15.68325551 0.044120586 0.055901278 1.90E-07 6.72204603 0.193700868 WDGS(ph)EEDEDNSKK ddPTM_K562_Paclitaxel_30min_R1 3 WDGSEEDEDNSKK 13 1 A0A087WUT6;O60841 A0A087WUT6 EIF5B Eukaryotic translation initiation factor 5B 1 WDGS(1)EEDEDNSKK;WDGS(1)EEDEDNSKK;WDGS(1)EEDEDNSKK 89.466 0.010309 155375000 5142.7 3831.93 14873.2 6998.8 4268.4 3399.53 2882.44 6263.6 5735.7 9909.9 TRUE FALSE 5214.713667 4250.313076 11118.27671 6549.928293 4849.828345 4002.388914 3429.367943 5731.468084 6286.639613 7890.25694 0.660905431 0.538678665 1.409114658 0.830128644 0.614660382 0.507257108 0.434633241 0.726398155 0.796759809 1 12.94585657 -3.9454139 22.01675697 0.739346642 0.641465453 0 0.271462301 0 0 0.065643536 0 0.000113393 3.9454139 -0.09788119 WDQTADQTPGAT(ph)PK ddPTM_K562_Paclitaxel_30min_R1 4 WDQTADQTPGATPK 14 0 O75533 O75533 SF3B1 Splicing factor 3B subunit 1 1 WDQTADQTPGAT(1)PK;WDQTADQTPGAT(1)PK;WDQTADQT(0.008)PGAT(0.992)PK;WDQTADQTPGAT(1)PK 205.12 2.40E-12 124919000 14602.6 12455 27061.5 15486.9 11473.1 10993.6 10825.5 16325.3 12997.6 21274.9 TRUE FALSE 14807.08145 13814.87902 20229.48963 14493.63955 13035.93046 12943.1606 12879.58211 14938.36387 14246.07755 16939.0637 0.874138129 0.815563319 1.194250756 0.855634042 0.769577982 0.7641013 0.760347935 0.881888405 0.841019185 1 14.04806651 WDRELIS(ph)ERWK ddPTM_K562_Paclitaxel_30min_R1 1 WDRELISERWK 11 2 Q9BS19;P02790 Q9BS19 HPX Hemopexin 1 WDRELIS(1)ERWK 68.657 0.028317 24963000 2106.7 2087.3 3349 2716.7 2352.5 1958.6 2183.7 2899.7 2696.7 2773.1 TRUE FALSE 2136.2003 2315.198473 2503.50353 2542.463021 2672.950328 2305.93021 2598.045675 2653.352386 2955.730084 2207.940698 0.967508005 1.048578196 1.133863574 1.151508745 1.210607844 1.0443805 1.176682724 1.201731726 1.338681826 1 11.10848571 -5.485051924 1.311387923 1.168517661 0.921899762 0.339991181 0.087137043 1.023595566 2.100424676 0.026075887 0.304473238 3.27E-06 5.485051924 -0.246617898 WEAERDDWLHNR ddPTM_K562_Paclitaxel_30min_R1 2 WEAERDDWLHNR 12 1 Q03701 Q03701 CEBPZ CCAAT/enhancer-binding protein zeta 0 ; 122.69 0.0020843 104563000 8205.3 8117.8 9894.4 8524 8229.7 8190.5 7980.8 9588.1 8214.3 10222.1 FALSE TRUE 8320.199516 9004.128857 7396.436348 7977.308792 9350.72447 9642.970175 9495.115137 8773.531058 9003.320217 8138.830409 1.022284419 1.106317297 0.908783692 0.980154198 1.148902729 1.184810309 1.16664369 1.077984258 1.106217941 1 12.99060577 -6.761420722 24.99999998 1.124155759 1.004837118 0.389068367 0.06663557 0.50669407 676488.5706 0.020758352 0.025109489 1.73E-07 6.761420722 -0.119318641 WEDGSRDGVS(ph)LGAVS(ph)STEEASR ddPTM_K562_Paclitaxel_30min_R1 1 WEDGSRDGVSLGAVSSTEEASR 22 1 H3BS66;A0A2R8Y7R4;B2RUZ4 H3BS66 SMIM1 Small integral membrane protein 1 2 WEDGS(0.003)RDGVS(0.659)LGAVS(0.624)S(0.373)T(0.337)EEAS(0.005)R 65.744 0.010334 48961000 3767.3 3088.7 3685.8 2937.9 2362.6 2752.3 3232.6 3769.5 4501.7 4470.4 TRUE FALSE 3820.053823 3425.934711 2755.274205 2749.476244 2684.426119 3240.381761 3845.968975 3449.257447 4934.108399 3559.330026 1.073250807 0.962522353 0.77409911 0.772470162 0.754194216 0.910390927 1.080531714 0.969074916 1.38624639 1 11.79738999 -7.922960261 1.749517197 1.142211037 0.860212125 0.410736979 0.1382993 0.370133815 2.262913266 0.084833126 0.045490795 1.19E-08 7.922960261 -0.281998913 WEDGSRDGVS(ph)LGAVSS(ph)TEEASR ddPTM_K562_Paclitaxel_30min_R1 1 WEDGSRDGVSLGAVSSTEEASR 22 1 H3BS66;A0A2R8Y7R4;B2RUZ4 H3BS66 SMIM1 Small integral membrane protein 1 2 WEDGS(0.112)RDGVS(0.714)LGAVS(0.377)S(0.419)T(0.377)EEASR 76.31 0.0022361 30418000 4906.2 4043.6 4643.1 3766.6 3052.2 3166.3 3653.8 4483.2 5847.1 5492.9 TRUE FALSE 4974.901937 4485.093923 3470.89198 3525.027135 3467.961314 3727.798848 4347.089476 4102.324177 6408.740081 4373.443965 1.137525021 1.02552907 0.793629004 0.806007157 0.7929589 0.852371467 0.993973974 0.938007714 1.465376059 1 12.09455409 -8.637912131 8.706517263 1.230887363 0.90749784 0.417107109 0.149046468 0.233244718 16.61435625 0.102093263 0.038270289 2.30E-09 8.637912131 -0.323389523 WEDGSRDGVSLGAVS(ph)STEEASR ddPTM_K562_Paclitaxel_30min_R1 1 WEDGSRDGVSLGAVSSTEEASR 22 1 H3BS66;A0A2R8Y7R4;B2RUZ4 H3BS66 SMIM1 Small integral membrane protein 1 1 WEDGSRDGVSLGAVS(0.507)S(0.196)T(0.296)EEAS(0.001)R 90.78 0.00031271 63991000 915.64 894.02 1130.1 1020.6 805.03 1104.3 852.8 1036.8 1164.8 995.94 TRUE FALSE 928.461785 991.632127 844.7922781 955.143284 914.6887153 1300.1321 1014.614348 948.7173685 1276.684244 792.9668813 1.170870823 1.250534102 1.065356319 1.204518507 1.153501788 1.63957932 1.279516676 1.19641487 1.610009541 1 9.631116802 WEDGSRDGVSLGAVSS(ph)TEEASR ddPTM_K562_Paclitaxel_30min_R1 1 WEDGSRDGVSLGAVSSTEEASR 22 1 H3BS66;A0A2R8Y7R4;B2RUZ4 H3BS66 SMIM1 Small integral membrane protein 1 1 WEDGSRDGVS(0.001)LGAVS(0.251)S(0.373)T(0.373)EEAS(0.001)R 94.955 0.00029718 60165000 674.18 669.87 875.39 702 472.25 491.14 519.71 594.94 705.48 576.79 TRUE FALSE 683.6206 743.008672 654.3869678 656.976862 536.5784453 578.2367831 618.3222594 544.3961335 773.2445062 459.2398814 1.488591535 1.617909729 1.424934973 1.430574496 1.168405591 1.25911709 1.346403665 1.185428695 1.683748597 1 8.843104124 -6.289600705 1.994538033 1.288623326 1.543180684 0.280277341 0.170562839 0.436711651 3.386353415 0.050190187 0.096912411 5.13E-07 6.289600705 0.254557358 WEETRTPESQPDT(ph)PPGTPLVSQDEKR ddPTM_K562_Paclitaxel_30min_R1 3 WEETRTPESQPDTPPGTPLVSQDEKR 26 2 A0A0D9SEV0;M0R000;M0QYI1;A0A0D9SFD6;M0R3C8;A0A0D9SFL2;M0QYH2;Q96T60-2;Q96T60 A0A0D9SEV0 PNKP Bifunctional polynucleotide phosphatase/kinase;Polynucleotide 3-phosphatase;Polynucleotide 5-hydroxyl-kinase 1 WEETRTPES(0.001)QPDT(0.997)PPGT(0.001)PLVSQDEKR;WEETRTPES(0.012)QPDT(0.981)PPGT(0.006)PLVSQDEKR;WEETRTPES(0.001)QPDT(0.999)PPGTPLVSQDEKR 83.826 0.0007445 112963000 2805.35 2524.44 4473.5 3412.56 2702.14 2262.14 2292.09 3648.19 3053.18 3786.3 TRUE FALSE 2844.633555 2800.066896 3344.109597 3193.693676 3070.217216 2663.298767 2727.002112 3338.253488 3346.451581 3014.649982 0.943603262 0.928819901 1.109286192 1.059391205 1.0184324 0.88345207 0.904583328 1.107343641 1.110063059 1 11.55777479 -8.28176671 24.88508047 1.081527522 0.982387951 0.261361926 0.071885336 1173.957623 1437171.22 0.043108371 0.020748748 5.23E-09 8.28176671 -0.099139571 WELNAMTTNSNIS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 WELNAMTTNSNISR 14 0 F8W6A4;E7ERR0;Q9BQ90 F8W6A4 KLHDC3 Kelch domain-containing protein 3 1 WELNAMT(0.02)T(0.02)NS(0.02)NIS(0.941)R 103.76 0.010331 121010000 1501.7 1447 1702.2 1616.6 1390.8 1343.8 1025.2 1177.9 1237.4 817.64 TRUE FALSE 1522.728433 1604.988353 1272.458557 1512.918512 1580.250506 1582.104062 1219.726348 1077.830043 1356.257799 651.0045192 2.339044336 2.465402783 1.954607871 2.323975436 2.427403282 2.430250506 1.873606576 1.655641414 2.083330851 1 9.346523748 -9.429894608 0.427162025 0.905388214 2.359829482 0.758901331 0.214999312 1.00903414 0.369620068 0.440912062 0.154000925 3.72E-10 9.429894608 1.454441268 WERS(ph)IPLR ddPTM_K562_Paclitaxel_30min_R1 1 WERSIPLR 8 1 Q9H977;Q9H977-4 Q9H977 WDR54 WD repeat-containing protein 54 1 WERS(1)IPLR 82.261 0.020033 59073000 201.88 190.2 374.85 331.45 259.48 253.05 160.78 235.39 260.71 212.68 TRUE FALSE 204.7069429 210.9666792 280.2144814 310.1922805 294.825569 297.9248645 191.2871657 215.3921502 285.7523604 169.3356993 1.208882378 1.245848809 1.654786809 1.831818582 1.741071554 1.759374224 1.129632833 1.271983115 1.687490362 1 7.403742343 -10.64419441 0.487798875 0.887671612 1.5289099 0.254874398 0.253304428 17.46403386 3.330344013 3.48175573 0.142733473 2.27E-11 10.64419441 0.641238288 WFNGQPIHAELS(ph)PVTDFR ddPTM_K562_Paclitaxel_30min_R1 1 WFNGQPIHAELSPVTDFR 18 0 P0DN76;Q01081;Q01081-4;Q01081-2 P0DN76 U2AF1 Splicing factor U2AF 35 kDa subunit 1 WFNGQPIHAELS(0.575)PVT(0.425)DFR 73.831 0.013104 6630300 1212.8 1243 1142 725.7 928.39 1092.7 1223.7 1553.1 1112.5 1654.2 TRUE FALSE 1229.782942 1378.714944 853.6879759 679.1568501 1054.852436 1286.475003 1455.890687 1421.154461 1219.360596 1317.073132 0.933724113 1.046802118 0.648170519 0.515656142 0.800906503 0.976768086 1.105398517 1.079024715 0.92581085 1 10.36311974 -7.314496168 3.925354752 1.033508007 0.779206658 0.39328145 0.142425484 0.263595846 8.451704983 0.058249692 0.052127942 4.85E-08 7.314496168 -0.25430135 WGAAT(ph)TSPAASDAR ddPTM_K562_Paclitaxel_30min_R1 1 WGAATTSPAASDAR 14 0 A0A087WXI6;A0A087WX07;Q86W56 A0A087WXI6 PARG Poly(ADP-ribose) glycohydrolase 1 WGAAT(0.691)T(0.1)S(0.209)PAASDAR 126.1 0.00094918 14039000 1706.1 1531.4 1881.8 1623 1375.5 1521.3 1264.1 1599.3 1637.4 1678.3 TRUE FALSE 1729.990664 1698.603431 1406.716316 1518.908044 1562.866387 1791.081195 1503.956376 1463.429482 1794.679586 1336.261539 1.294649748 1.271160908 1.05272529 1.136684698 1.16958121 1.340367243 1.12549552 1.095166956 1.343060123 1 10.38398669 -11.32981055 3.835257058 0.999472254 1.196407556 0.273367748 0.098833294 55419140.86 210.7508574 258510.5819 0.025000448 4.68E-12 11.32981055 0.196935302 WGAATTS(ph)PAASDAR ddPTM_K562_Paclitaxel_30min_R1 1 WGAATTSPAASDAR 14 0 A0A087WXI6;A0A087WX07;Q86W56 A0A087WXI6 PARG Poly(ADP-ribose) glycohydrolase 1 WGAAT(0.075)T(0.044)S(0.881)PAASDAR 177.93 3.46E-06 10903000 1698.1 1762.6 2136 1619.6 1678.2 1806.5 1545.3 1849.4 1702.1 1974 TRUE FALSE 1721.878639 1955.046629 1596.740382 1515.726105 1906.799252 2126.85741 1838.512608 1692.281926 1865.59431 1571.697716 1.095553312 1.243907533 1.015933513 0.964387801 1.213209914 1.353222944 1.169762219 1.076722266 1.186993078 1 10.61810806 -4.985844283 16.765187 1.141327005 1.016519051 0.008975153 0.116043898 20454400.12 471390318.2 0.030565984 61198055.88 1.03E-05 4.985844283 -0.124807954 WGDRDSEGTWR ddPTM_K562_Paclitaxel_30min_R1 2 WGDRDSEGTWR 11 1 Q14152-2;Q14152 Q14152-2 EIF3A Eukaryotic translation initiation factor 3 subunit A 0 ; 172.21 0.0021474 126416000 3772.1 3612.4 4436.3 3588.3 3191.5 3333.6 2707.7 3591.9 4888.2 4034.4 FALSE TRUE 3824.921038 4006.814048 3316.301198 3358.162499 3626.236333 3924.767154 3221.47194 3286.745675 5357.733451 3212.187065 1.190752892 1.2473788 1.032412226 1.04544425 1.128899488 1.221836423 1.002890515 1.023211167 1.667939426 1 11.6493402 WGDYDSHDIER ddPTM_K562_Paclitaxel_30min_R1 4 WGDYDSHDIER 11 0 Q6P2Q9 Q6P2Q9 PRPF8 Pre-mRNA-processing-splicing factor 8 0 ;;; 193.3 0.0012988 92218000 15207.2 13309.5 19720.4 16030.5 13413.6 13386 13826.5 15537.6 13085.8 18894.1 FALSE TRUE 15420.14772 14762.67622 14741.74112 15002.37548 15240.75941 15759.81915 16450.0062 14217.5839 14342.74956 15043.47205 1.025039144 0.981334374 0.979942734 0.997268146 1.013114483 1.047618469 1.093497973 0.945099898 0.953420162 1 13.87684996 -4.902561048 16.73738108 1.003435356 1.94857317 0.026468738 0.041414787 14730929.12 19745991.21 0.011193534 520215692 1.25E-05 4.902561048 0.945137814 WGLLPRT(ph)NT(ph)PAR ddPTM_K562_Paclitaxel_30min_R1 1 WGLLPRTNTPAR 12 1 Q7Z4F1 Q7Z4F1 LRP10 Low-density lipoprotein receptor-related protein 10 2 WGLLPRT(1)NT(1)PAR 77.279 0.029393 129540000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 WGRDDIENIAR ddPTM_K562_Paclitaxel_30min_R1 1 WGRDDIENIAR 11 1 O60264 O60264 SMARCA5 SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 0 121.29 0.020602 22190000 1824.5 1821.4 2317.2 2059.6 1375.8 1534.7 1867.6 2075.5 1438.3 2143.6 FALSE TRUE 1850.048629 2020.266612 1732.194201 1927.506474 1563.207252 1806.857497 2221.96735 1899.17332 1576.455141 1706.733143 1.083970647 1.183703861 1.014918008 1.129354335 0.915906074 1.058664328 1.301883285 1.112753524 0.923668207 1 10.73702179 -5.760016341 24.99968333 1.067500175 1.133837238 0.068203919 0.108097296 121.8248763 2139986.544 0.029119461 0.06898048 1.74E-06 5.760016341 0.066337063 WGS(ph)PQQRPPISENSR ddPTM_K562_Paclitaxel_30min_R1 1 WGSPQQRPPISENSR 15 1 Q9UQC2;Q9UQC2-2 Q9UQC2 GAB2 GRB2-associated-binding protein 2 1 WGS(0.998)PQQRPPIS(0.002)ENSR 127.66 2.79E-09 0 797.88 960.13 1068.6 973.18 706.54 496.92 805.98 871.95 923.55 1090.3 TRUE FALSE 809.0527817 1064.96024 798.8187137 910.7645906 802.7827098 585.0417849 958.9104975 797.872405 1012.261104 868.0962615 0.931985101 1.226776669 0.920196007 1.04915161 0.924762317 0.673936533 1.104613094 0.919105911 1.166070111 1 9.761711219 WHQPPPS(ph)PLPLR ddPTM_K562_Paclitaxel_30min_R1 4 WHQPPPSPLPLR 12 0 J3QQY0;J3KSZ8;Q68DK7;Q68DK7-2;J3KTC2;Q68DK7-3 J3QQY0 MSL1 Male-specific lethal 1 homolog 1 WHQPPPS(1)PLPLR;WHQPPPS(1)PLPLR;WHQPPPS(1)PLPLR;WHQPPPS(1)PLPLR 99.927 0.007193 58426100 6143.6 5654.3 7632.5 7012.9 5679.3 5617.2 5961.4 6545.3 4639.98 7541.8 TRUE FALSE 6229.629355 6271.655596 5705.580977 6563.123983 6452.916811 6613.331551 7092.544529 5989.235911 5085.670811 6004.77702 1.037445576 1.044444377 0.950173663 1.092983796 1.074630547 1.101345067 1.181150358 0.997411876 0.846937496 1 12.55189496 -8.523930803 24.7828152 0.923037331 1.067452139 0.451139647 0.064558377 30.4618099 717445.2026 0.044047179 0.016964519 2.99E-09 8.523930803 0.144414807 WIDNPTVDDR ddPTM_K562_Paclitaxel_30min_R1 1 WIDNPTVDDR 10 0 P18206-2;P18206 P18206-2 VCL Vinculin 0 166.07 1.26E-48 0 1029.1 1153.8 917.09 1081.4 1099.2 1043.8 1165.6 1259.3 933.52 1358 FALSE TRUE 1043.510575 1279.775786 685.5592871 1012.043844 1248.92965 1228.903274 1386.766515 1152.314605 1023.188767 1081.238855 0.965106434 1.183619864 0.634049807 0.936003955 1.155091351 1.136569657 1.282571847 1.065735475 0.946311504 1 10.07846955 -6.750567672 23.10568811 1.112185814 0.926714817 0.226518758 0.150644502 125.6677644 267078.1819 0.046130489 0.05885014 1.78E-07 6.750567672 -0.185470997 WIPLSSDAQAPLAQPES(ph)PTASAGDEPR ddPTM_K562_Paclitaxel_30min_R1 3 WIPLSSDAQAPLAQPESPTASAGDEPR 27 0 Q6GQQ9-2;Q6GQQ9 Q6GQQ9-2 OTUD7B OTU domain-containing protein 7B 1 WIPLSSDAQAPLAQPES(0.798)PT(0.19)AS(0.011)AGDEPR;WIPLSSDAQAPLAQPES(0.722)PT(0.258)AS(0.02)AGDEPR;WIPLSSDAQAPLAQPES(0.688)PT(0.286)AS(0.026)AGDEPR 112.34 6.38E-10 34203000 3974.35 3824.36 4386.9 4014.3 3800.43 3437.04 3758.07 3807.2 3332 4547.8 TRUE FALSE 4030.003162 4241.916558 3279.372839 3756.840765 4318.112908 4046.550786 4471.144164 3483.754596 3652.053488 3620.955864 1.112966662 1.171490821 0.905664958 1.037527357 1.19253398 1.117536622 1.234796648 0.962109103 1.008588236 1 11.82215488 -8.309146472 24.99989631 0.989011433 1.105473408 0.287621563 0.086389733 602.9306561 315950.1152 0.050223036 0.024126485 4.91E-09 8.309146472 0.116461975 WISENQDSADVDPQEHS(ph)FTR ddPTM_K562_Paclitaxel_30min_R1 2 WISENQDSADVDPQEHSFTR 20 0 Q15751 Q15751 HERC1 Probable E3 ubiquitin-protein ligase HERC1 1 WISENQDSADVDPQEHS(0.896)FT(0.104)R;WISENQDSADVDPQEHS(0.947)FT(0.053)R 183.69 2.09E-16 69784000 3371.2 3477 3795.9 3588.2 3414.9 3215.5 3734.9 4206.8 3286.1 4678.2 TRUE FALSE 3418.407201 3856.630618 2837.578098 3358.068912 3880.067195 3785.723777 4443.577778 3849.406082 3601.744588 3724.780272 0.917747344 1.035398154 0.76181087 0.90154819 1.041690224 1.016361638 1.192977156 1.033458567 0.966968338 1 11.86293961 -6.772021516 6.738272075 1.050330401 0.9029723 0.395660507 0.08306049 0.151135049 30.81811685 0.026345963 0.031377484 1.69E-07 6.772021516 -0.147358101 WIVEER ddPTM_K562_Paclitaxel_30min_R1 1 WIVEER 6 0 G3V3W9;O95433-2;O95433 G3V3W9 AHSA1 Activator of 90 kDa heat shock protein ATPase homolog 1 0 134.12 7.80E-05 7943400 2206.9 1941.5 2456.5 2532.2 2134.5 2520.3 1930.7 2319.1 2157.6 2471.1 FALSE TRUE 2237.803409 2153.479536 1836.326193 2369.796026 2425.255037 2967.239818 2297.040246 2122.07798 2364.84712 1967.488464 1.137390867 1.09453223 0.933335177 1.204477724 1.232665442 1.508135815 1.167498711 1.078572006 1.201962382 1 10.94213946 -6.399663563 9.027826968 1.216234235 1.059258992 0.190053555 0.133033495 0.523072171 36.19446782 0.039137841 0.05808101 3.98E-07 6.399663563 -0.156975243 WKEPGSGGPQNLS(ph)GPGGR ddPTM_K562_Paclitaxel_30min_R1 1 WKEPGSGGPQNLSGPGGR 18 1 M0QZH1;M0QX70;M0QYR7;M0R2N0;M0QZC7;Q9H0W8-2;Q9H0W8 M0QZH1 SMG9 Protein SMG9 1 WKEPGSGGPQNLS(1)GPGGR 82.146 0.0056025 58973000 781.14 650.99 1440.1 1209.6 821.12 639.76 596.22 821.33 885.32 1188.8 TRUE FALSE 792.07837 722.0672897 1076.528944 1132.02167 932.9704457 753.2124533 709.3496325 751.5528899 970.3589417 946.5219075 0.836830467 0.76286379 1.13735238 1.195980422 0.985682886 0.795768642 0.749427591 0.794015314 1.025183817 1 9.886492088 -7.241103841 20.63374696 0.852289387 0.991796095 0.119585485 0.144298827 171.1297125 173637.345 0.052115652 0.051981718 5.74E-08 7.241103841 0.139506708 WLAES(ph)PVGLPPEEEDKLTR ddPTM_K562_Paclitaxel_30min_R1 2 WLAESPVGLPPEEEDKLTR 19 1 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 WLAES(1)PVGLPPEEEDKLTR;WLAES(1)PVGLPPEEEDKLTR 101 0.00059155 215506000 4344.6 3453.4 6784.3 4301.2 3500.2 3350.1 3464.6 4159.9 3996.5 5958.6 TRUE FALSE 4405.437804 3830.453891 5071.519558 4025.340283 3976.986499 3944.193197 4121.989764 3806.49053 4380.381682 4744.234049 0.928587789 0.807391425 1.068985953 0.848470004 0.838277888 0.831365644 0.868841992 0.802340376 0.923306404 1 12.21195947 -4.916670143 19.71441244 0.881211755 3.011090744 0.016295853 0.082683056 1551.374315 390336.9523 0.019452971 9313.024891 1.21E-05 4.916670143 2.129878988 WLDDLLAS(ph)PPPSGGGAR ddPTM_K562_Paclitaxel_30min_R1 4 WLDDLLASPPPSGGGAR 17 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 WLDDLLAS(1)PPPSGGGAR;WLDDLLAS(0.998)PPPS(0.002)GGGAR;WLDDLLAS(1)PPPSGGGAR;WLDDLLAS(0.999)PPPS(0.001)GGGAR 216.77 2.21E-23 189936000 10524.37 11014.2 13219.9 12316.3 10687.2 10257.7 9755.1 12477.1 10544.1 13167 TRUE FALSE 10671.74365 12216.7676 9882.372743 11526.38764 12142.97758 12076.75907 11606.0793 11417.09248 11556.90792 10483.55817 1.017950535 1.165326448 0.942654448 1.099472856 1.158287804 1.151971389 1.107074441 1.089047467 1.102384107 1 13.35584084 -6.496406005 24.94971084 1.110552269 1.048770671 0.136534981 0.065232724 1316.146619 1240426.516 0.017722853 0.026195377 3.19E-07 6.496406005 -0.061781598 WLDES(ph)DAEMELR ddPTM_K562_Paclitaxel_30min_R1 9 WLDESDAEMELR 12 0 H3BS72;Q9P035;H3BPZ1 H3BS72 HACD3 Very-long-chain (3R)-3-hydroxyacyl-CoA dehydratase 3 1 WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR;WLDES(1)DAEMELR 173.59 0.00023182 411682300 12094.11 13248.06 14657.6 14122.78 11191.25 11846.26 15307.73 18611.52 10768.76 22344.03 TRUE FALSE 12263.46485 14694.52799 10957.1076 13217.0081 12715.68772 13947.02788 18212.29186 17030.35521 11803.14751 17790.30442 0.689334177 0.825985191 0.615903322 0.742933217 0.714753802 0.783967916 1.023720079 0.957282956 0.663459558 1 14.11880358 -7.561178368 7.636279757 0.907755726 0.722347714 0.435836381 0.103804174 0.216221918 35.68202509 0.039123063 0.030388212 2.75E-08 7.561178368 -0.185408012 WLEASEEER ddPTM_K562_Paclitaxel_30min_R1 1 WLEASEEER 9 0 Q14137;Q14137-2 Q14137 BOP1 Ribosome biogenesis protein BOP1 0 122.19 0.015022 10369000 589.33 348.34 640.63 647.08 498.3 488.14 509.46 406.66 454.97 565.63 FALSE TRUE 597.5824382 386.3729392 478.8950333 605.579185 566.1768963 574.7047752 606.1273754 372.1116947 498.6719014 450.3542955 1.326916262 0.857931062 1.063373966 1.34467283 1.257181073 1.276117006 1.345890072 0.82626434 1.107287987 1 8.814916612 -8.260896296 24.9999491 0.975082127 1.200597027 0.316801056 0.15595694 65.97214347 3037100.619 0.083100531 0.044201505 5.48E-09 8.260896296 0.2255149 WLHEINQNCDDVCR ddPTM_K562_Paclitaxel_30min_R1 2 WLHEINQNCDDVCR 14 0 F5H157;Q15286-2;Q15286 F5H157 RAB35 Ras-related protein Rab-35 0 ; 158.11 0.00024828 17298500 1709.97 1608.33 2263.5 1674.83 1419.61 1599.96 1829.62 2182.2 1784.59 2185.2 FALSE TRUE 1733.914856 1783.932908 1692.05143 1567.4139 1612.984916 1883.690441 2176.780844 1996.808489 1956.007843 1739.855041 0.996585816 1.025334219 0.972524372 0.900887639 0.92708006 1.082670911 1.251127705 1.1476867 1.124236099 1 10.76475139 -7.440287593 4.774257335 1.146176981 0.966010615 0.587622479 0.065916642 0.148831435 5.9642269 0.024314889 0.020999001 3.63E-08 7.440287593 -0.180166366 WLIS(ph)PVK ddPTM_K562_Paclitaxel_30min_R1 1 WLISPVK 7 0 C9JWC4;Q8NCD3-3;Q8NCD3-2;Q8NCD3 C9JWC4 HJURP Holliday junction recognition protein 1 WLIS(1)PVK 87.308 0.024712 37654000 5813.9 5166.3 8672.9 6406.5 4565.9 4306.3 5195.2 5620.8 4389.2 7898.7 TRUE FALSE 5895.312537 5730.374105 6483.31913 5995.615764 5187.852881 5069.961842 6180.962079 5143.277956 4810.802271 6288.940604 0.937409479 0.911182736 1.030907992 0.953358625 0.824916819 0.806171049 0.982830411 0.817828992 0.764962269 1 12.61860129 -6.722621344 10.20667773 0.859870143 0.96019932 0.258748203 0.075896738 0.59409534 151.4691799 0.022340331 0.02873594 1.89E-07 6.722621344 0.100329177 WLNSGRGDEASEEGQNGSS(ph)PK ddPTM_K562_Paclitaxel_30min_R1 2 WLNSGRGDEASEEGQNGSSPK 21 1 E7EV99;E7ENY0;P35611-5;P35611-2;P35611-6;P35611-4;P35611;P35611-3;H0Y9H2 E7EV99 ADD1 Alpha-adducin 1 WLNSGRGDEASEEGQNGS(0.16)S(0.84)PK;WLNSGRGDEASEEGQNGS(0.15)S(0.85)PK 151.85 6.72E-18 155121000 3377.8 2578.7 5641.2 3496.8 2710.2 2486.4 2355.4 3484.4 2851.8 4423.8 TRUE FALSE 3425.099621 2860.251187 4217.009291 3272.530899 3079.375124 2927.328129 2802.324854 3188.378471 3125.728132 3522.227132 0.972424405 0.812057565 1.197256489 0.929108424 0.874269321 0.831101465 0.795611626 0.905216601 0.887429463 1 11.78227223 -6.52106298 22.68793786 0.873463219 0.990303071 0.196841193 0.099995877 32.26995067 403223.2667 0.029229993 0.038438681 3.01E-07 6.52106298 0.116839852 WLPEEDFR ddPTM_K562_Paclitaxel_30min_R1 1 WLPEEDFR 8 0 Q8IXT5 Q8IXT5 RBM12B RNA-binding protein 12B 0 99.375 0.0041016 0 1939.4 1982.3 2763.5 2442.8 1871.9 2204.5 1911.2 2615.1 1757.9 2550.2 FALSE TRUE 1966.557584 2198.734218 2065.820246 2286.129742 2126.884472 2595.437122 2273.840223 2392.930932 1926.75415 2030.46784 0.968524369 1.082870743 1.017410966 1.125912805 1.047484934 1.278245866 1.11986025 1.178512107 0.948921284 1 10.98759646 -5.186394465 0.864258923 1.112633038 0.895815447 0.124127029 0.090538982 4.793192071 2.568919216 0.032041838 1.020126665 6.51E-06 5.186394465 -0.216817592 WLPSS(ph)PSGVAK ddPTM_K562_Paclitaxel_30min_R1 2 WLPSSPSGVAK 11 0 Q8IWI9-3;Q8IWI9;H3BP52;H3BTF4 Q8IWI9-3 MGA MAX gene-associated protein 1 WLPS(0.007)S(0.991)PS(0.002)GVAK;WLPS(0.001)S(0.994)PS(0.004)GVAK 171.32 0.00011138 192321000 7166.2 6464.5 11547 7775.5 6071.4 6167.9 5372.1 7784.5 7411.1 9297.6 TRUE FALSE 7266.54891 7170.315972 8631.817039 7276.814232 6898.42747 7261.690463 6391.427931 7123.158136 8122.969269 7402.744016 0.981602078 0.968602447 1.166029383 0.98298877 0.931874377 0.980945775 0.863386322 0.962232129 1.09729166 1 12.85384443 -6.503199705 24.93216415 0.964937178 1.038860191 0.134449458 0.074029098 1380.61385 1749155.761 0.021425381 0.031255299 3.14E-07 6.503199705 0.073923013 WNSQMTACRHQESGRT(ph)Y(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 WNSQMTACRHQESGRTYR 18 2 H7BYF8 H7BYF8 C21orf62 2 WNS(0.023)QMT(0.006)ACRHQES(0.237)GRT(0.85)Y(0.883)R 51.688 0.028573 176610000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 WPGS(ph)PTSR ddPTM_K562_Paclitaxel_30min_R1 1 WPGSPTSR 8 0 O43524;O43524-2 O43524 FOXO3 Forkhead box protein O3 1 WPGS(0.595)PT(0.399)S(0.006)R 81.972 0.02925 15178000 1383.4 1526 2112.8 1506.8 1204.7 1480.3 1589.8 1746.8 1351.7 2003.3 TRUE FALSE 1402.771868 1692.613841 1579.397509 1410.160592 1368.800536 1742.810421 1891.456251 1598.398437 1481.536825 1595.02636 0.87946626 1.061182362 0.990201509 0.884098613 0.858167971 1.092653052 1.18584639 1.00211412 0.928847862 1 10.63936455 -7.275653372 24.89475361 1.051021549 0.941935142 0.284440773 0.084051401 1111.683956 1947026.166 0.031937955 0.028303505 5.30E-08 7.275653372 -0.109086407 WPQGAVPQLPPSAPATSEMT(ph)TTPERPR ddPTM_K562_Paclitaxel_30min_R1 1 WPQGAVPQLPPSAPATSEMTTTPERPR 27 1 P27708;F8VPD4;H7BZB3 P27708 CAD CAD protein;Glutamine-dependent carbamoyl-phosphate synthase;Aspartate carbamoyltransferase;Dihydroorotase 1 WPQGAVPQLPPS(0.003)APAT(0.092)S(0.12)EMT(0.544)T(0.12)T(0.12)PERPR 88.395 2.56E-05 18720000 1955.5 2437.4 2659.3 2036.7 2079.4 2077.8 2241.1 2995.7 2300.2 2858.5 TRUE FALSE 1982.883033 2703.523575 1987.926825 1906.075178 2362.649485 2446.268656 2666.337026 2741.196586 2521.144488 2275.936131 0.871238435 1.187873218 0.873454575 0.837490627 1.038100082 1.074840644 1.171534205 1.204425972 1.10773956 1 11.15224436 -7.219955302 2.56159544 1.133872687 0.955459521 0.351655231 0.105209217 0.322235509 4.173330797 0.039794295 0.037875932 6.03E-08 7.219955302 -0.178413166 WPT(ph)GDNIHAEHQVR ddPTM_K562_Paclitaxel_30min_R1 2 WPTGDNIHAEHQVR 14 0 H0YEH2;Q5T1Z4;Q5T1Z8;Q14671-2;Q14671;Q14671-3;E9PR38;Q14671-4 H0YEH2 PUM1 Pumilio homolog 1 1 WPT(1)GDNIHAEHQVR;WPT(1)GDNIHAEHQVR 112.34 0.0037154 24894000 2637.3 2318.2 3257.2 2418.1 2548.3 2511.2 2966.5 3114.2 2483.2 3354.7 TRUE FALSE 2674.230337 2571.308916 2434.879575 2263.013889 2895.421603 2956.526061 3529.377889 2849.629272 2721.722455 2671.010299 1.001205551 0.962672782 0.911594978 0.847250155 1.084017386 1.106894295 1.321364388 1.066873188 1.018986133 1 11.38316982 -6.889128401 6.142089761 1.117869692 0.932332073 0.453668902 0.090175515 0.191426856 9.648329694 0.029463662 0.033561849 1.29E-07 6.889128401 -0.185537619 WQGS(ph)PAELDSDTQGAR ddPTM_K562_Paclitaxel_30min_R1 1 WQGSPAELDSDTQGAR 16 0 O43182-4;O43182 O43182-4 ARHGAP6 Rho GTPase-activating protein 6 1 WQGS(0.666)PAELDS(0.217)DT(0.117)QGAR 96.805 0.0051966 19552000 3412.1 3211.8 3382 3321.5 3189.2 3505.4 3506.6 3657.2 3492.5 3716.7 TRUE FALSE 3459.879927 3562.475186 2528.172272 3108.473856 3623.623034 4127.033472 4171.959044 3346.498032 3827.97023 2959.2345 1.169180721 1.203850248 0.854333197 1.050431744 1.224513648 1.394628737 1.409810221 1.130866118 1.293567722 1 11.53100831 -6.832783605 4.884070186 1.268078272 1.063660733 0.253668811 0.142382009 0.262235819 11.68178155 0.045547064 0.052750266 1.47E-07 6.832783605 -0.204417539 WQHWHEECER ddPTM_K562_Paclitaxel_30min_R1 2 WQHWHEECER 10 0 J3QLV0;J3QLD4;J3QL54;J3KT10;Q9BW27-2;Q9BW27-3;Q9BW27 J3QLV0 NUP85 Nuclear pore complex protein Nup85 0 ; 128.35 0.00094849 37321000 2007.85 1982.6 2515.9 2343.9 2223.88 1981.66 1733.14 2213.07 1553.58 2096.35 FALSE TRUE 2035.966095 2199.066973 1880.729929 2193.572745 2526.810107 2333.079577 2061.994267 2025.05589 1702.808301 1669.112719 1.219789455 1.317506569 1.126784253 1.314214864 1.513864269 1.397796296 1.235383473 1.213252926 1.020187721 1 10.70486567 -8.622359198 1.851668196 0.991148096 1.311564399 0.584105599 0.098043052 0.270852737 1.692862943 0.098531701 0.030439376 2.39E-09 8.622359198 0.320416303 WQLMVASCFRRSGNY(ph)QKALDTYK ddPTM_K562_Paclitaxel_30min_R1 1 WQLMVASCFRRSGNYQKALDTYK 23 3 Q13099-3;Q13099;Q13099-1 Q13099-3 IFT88 Intraflagellar transport protein 88 homolog 1 WQLMVAS(0.003)CFRRS(0.01)GNY(0.984)QKALDT(0.001)Y(0.001)K 42.123 0.026106 82843000 638.68 786 771.64 865.66 818.87 1092.7 936.55 1008.3 1446.1 878.64 TRUE FALSE 647.6234905 871.8181381 576.8299385 810.1404422 930.4139576 1286.475003 1114.255473 922.6386214 1585.004366 699.5726857 0.925741533 1.246215234 0.824546113 1.15805042 1.329974678 1.838944014 1.592765836 1.31886027 2.265675031 1 9.450330151 -6.897021168 2.644903272 1.621432972 1.027730852 0.399207241 0.325549685 0.266471795 3.782943282 0.103569883 0.120186394 1.27E-07 6.897021168 -0.59370212 WQRPS(ph)SPPPFLPAASEEAEPAEGLR ddPTM_K562_Paclitaxel_30min_R1 2 WQRPSSPPPFLPAASEEAEPAEGLR 25 1 H3BLU1;Q4KMQ1-2;Q4KMQ1-4;Q4KMQ1-3;Q4KMQ1 H3BLU1 TPRN Taperin 1 WQRPS(0.5)S(0.5)PPPFLPAASEEAEPAEGLR;WQRPS(0.5)S(0.5)PPPFLPAASEEAEPAEGLR 86.073 0.00010942 38466000 3395.7 3179.1 5501.2 3725.5 3255.2 3097.4 2748 3899.8 2761.3 4534.5 TRUE FALSE 3443.250277 3526.204889 4112.354022 3486.563105 3698.613351 3646.6804 3269.418654 3568.487648 3026.535203 3610.366411 0.95371214 0.976688925 1.139040627 0.965708936 1.024442655 1.010058256 0.905564223 0.988400412 0.838290317 1 11.81792955 -7.746380307 22.69737835 0.932097138 1.01431079 0.267507628 0.063570895 103.6933909 156288.8306 0.023774305 0.018314749 1.79E-08 7.746380307 0.082213653 WQRPS(ph)SPPPFLPAASEEAEPAEGLRVPGLAK ddPTM_K562_Paclitaxel_30min_R1 1 WQRPSSPPPFLPAASEEAEPAEGLRVPGLAK 31 2 H3BLU1;Q4KMQ1-2;Q4KMQ1-4;Q4KMQ1-3;Q4KMQ1 H3BLU1 TPRN Taperin 1 WQRPS(0.5)S(0.5)PPPFLPAASEEAEPAEGLRVPGLAK 55.417 0.0013133 20396000 623.97 610.1 835.61 886.46 604.59 624.35 556.47 882.72 726.36 837.33 TRUE FALSE 632.7075051 676.7127812 624.6499208 829.6064232 686.9453938 735.0697062 662.0572775 807.7274262 796.1301235 666.6816864 0.949039876 1.015046303 0.936953772 1.244381599 1.030394876 1.102579719 0.993063543 1.211563843 1.194168281 1 9.380854287 -6.230795483 24.96337854 1.111085758 0.971816594 0.378607473 0.084393136 741.9108972 604380.926 0.022695665 0.039304385 5.88E-07 6.230795483 -0.139269164 WQS(ph)PVTK ddPTM_K562_Paclitaxel_30min_R1 2 WQSPVTK 7 0 A9Z1X7;M0R088 A9Z1X7 SRRM1 1 WQS(1)PVTK;WQS(1)PVTK 97.965 0.011838 642840000 12543.9 10477.7 21604.2 14839.3 9968 8920.5 8980.9 12596.1 11587.7 15186 TRUE FALSE 12719.5533 11621.69072 16149.95251 13887.57372 11325.81036 10502.42542 10684.97889 11525.98268 12700.75036 12091.08486 1.051977837 0.961178492 1.33569094 1.148579625 0.93670754 0.868609024 0.883707212 0.953262905 1.050422729 1 13.56165607 -6.764832115 24.92380317 0.939185342 1.127796452 0.419611116 0.100745923 83.75331358 615270.4089 0.032745529 0.038654421 1.72E-07 6.764832115 0.18861111 WRPEDAEEAEHR ddPTM_K562_Paclitaxel_30min_R1 3 WRPEDAEEAEHR 12 1 H0YAE8;E7EUV9;F8W8D3;Q14493 H0YAE8 SLBP Histone RNA hairpin-binding protein 0 ;; 148.13 0.00037859 26901700 6102.6 6288.9 7293.7 6444.2 6083.5 6264.1 6376.4 7838.3 4903.6 8722 FALSE TRUE 6188.055228 6975.54337 5452.315228 6030.897855 6912.175695 7374.950183 7586.288613 7172.38749 5374.61269 6944.451612 0.891079033 1.004477208 0.785132582 0.868448395 0.995352273 1.06199173 1.092424433 1.032822732 0.773943428 1 12.76164506 -6.774361253 16.42279164 1.002844904 0.888358703 0.225810582 0.094564575 5.735797987 7288.39114 0.030219969 0.034812973 1.68E-07 6.774361253 -0.114486201 WRPHS(ph)PDGPR ddPTM_K562_Paclitaxel_30min_R1 2 WRPHSPDGPR 10 1 I1E4Y6;Q6Y7W6;C9JH78;C9IYH5;Q6Y7W6-3 I1E4Y6;Q6Y7W6-3 GIGYF2 PERQ amino acid-rich with GYF domain-containing protein 2 1 WRPHS(1)PDGPR;WRPHS(1)PDGPR 99.732 0.0070225 1326610000 7208.3 6788.5 8764.2 8006.6 6668.5 6338.1 7304.2 7430.5 6646.5 7849.5 TRUE FALSE 7309.23844 7529.691387 6551.569316 7493.092512 7576.862599 7462.073044 8690.13382 6799.232645 7284.926022 6249.767591 1.169521639 1.204795423 1.048290072 1.198939385 1.212343097 1.193976085 1.390473116 1.087917678 1.165631508 1 12.60958683 -9.224111118 1.564405805 1.001640712 1.193420999 0.311316777 0.084392248 1.027985919 4.531398328 0.082293573 0.023799927 5.97E-10 9.224111118 0.191780288 WRS(ph)IFNLGRSGHETK ddPTM_K562_Paclitaxel_30min_R1 1 WRSIFNLGRSGHETK 15 2 A0A0A0MRJ9;A0A0A0MRJ8;Q7Z6I6-2;Q7Z6I6-3;Q7Z6I6 A0A0A0MRJ9 ARHGAP30 Rho GTPase-activating protein 30 1 WRS(1)IFNLGRSGHETK 105.99 0.016072 14485000 3828.6 3185.1 5885.3 4485.3 3590.6 3014.5 3164.5 4378.7 1853.4 5537.2 TRUE FALSE 3882.212212 3532.859989 4399.483227 4197.632933 4079.700509 3549.079249 3764.947355 4006.702104 2031.427351 4408.715601 0.880576695 0.801335425 0.997905881 0.952121505 0.925371668 0.805014333 0.853978278 0.908813919 0.460775322 1 12.1061427 WT(ph)VQGAQNPSSKTLIS(ph)VSK ddPTM_K562_Paclitaxel_30min_R1 2 WTVQGAQNPSSKTLISVSK 19 1 A0A3B3IU24 A0A3B3IU24 2 WT(1)VQGAQNPSSKTLIS(0.5)VS(0.5)K;WT(1)VQGAQNPS(0.001)S(0.001)KT(0.001)LIS(0.499)VS(0.499)K 86.006 0.0021893 77670000 5422.3 5042.4 7410.1 6673.1 6171.8 6607.2 4015.2 6234.8 5310.6 5873.7 TRUE FALSE 5498.228929 5592.946284 5539.328608 6245.117234 7012.503649 7778.89415 4777.063239 5705.114824 5820.706858 4676.636716 1.175680144 1.19593345 1.184468443 1.335386435 1.499475815 1.663352239 1.021474091 1.219918324 1.244635239 1 12.19125565 -9.126881324 0.909592956 1.008264041 1.30962022 0.211824764 0.170452728 1.270997984 2.278898383 0.178938059 0.06144681 7.47E-10 9.126881324 0.301356179 WTEGQSNHSTGYES(ph)DNHTTPILCGAQYR ddPTM_K562_Paclitaxel_30min_R1 2 WTEGQSNHSTGYESDNHTTPILCGAQYR 28 0 H0YED9;H0Y7K5;A0A0A0MT54;P19544-6;P19544-4;P19544;P19544-7 H0YED9 WT1 Wilms tumor protein 1 WTEGQSNHS(0.001)T(0.013)GY(0.15)ES(0.68)DNHT(0.084)T(0.072)PILCGAQYR;WTEGQS(0.001)NHS(0.01)T(0.122)GY(0.187)ES(0.681)DNHTTPILCGAQYR 107.34 1.84E-09 132976000 432.56 201.97 434.78 360.55 318.61 204.99 244.708 639.37 459.86 531.39 TRUE FALSE 438.6171746 224.0217676 325.0144117 337.4259368 362.0100761 241.3420983 291.1400655 585.0515277 504.0316077 423.0924263 1.036693515 0.529486594 0.768187733 0.79752299 0.855628826 0.570424057 0.68812403 1.382798394 1.191303782 1 8.72482905 -8.25284128 24.9522908 1.21528832 0.740748195 0.614251371 0.160047672 351.1396448 1019035.592 0.073671996 0.041658647 5.59E-09 8.25284128 -0.474540125 WTGPEISPNTSGSS(ph)PVIHFTPSDLEVR ddPTM_K562_Paclitaxel_30min_R1 1 WTGPEISPNTSGSSPVIHFTPSDLEVR 27 0 A0AVK6 A0AVK6 E2F8 Transcription factor E2F8 1 WTGPEISPNT(0.001)S(0.005)GS(0.219)S(0.774)PVIHFTPSDLEVR 114.63 7.20E-12 18305000 631.88 587.44 509.7 460.42 601.36 436.06 512.57 859.83 559 803.9 TRUE FALSE 640.7282695 651.5786858 381.0199311 430.890722 683.2754131 513.3891184 609.8274817 786.7820746 612.6944477 640.0647387 1.001036662 1.017988723 0.595283427 0.673198656 1.06750985 0.802089363 0.952759065 1.22922265 0.957238246 1 9.322074022 -8.010145745 10.00184079 1.074230009 0.857425297 0.25565288 0.154751788 0.330252259 296.136819 0.071940996 0.044854325 9.77E-09 8.010145745 -0.216804712 Y(ph)ATPQVIQAPGPR ddPTM_K562_Paclitaxel_30min_R1 1 YATPQVIQAPGPR 13 0 A0A5F9ZHD0;A0A5F9ZHP4;C9J1X3;A0A5F9ZI29;A0A5F9ZGX5;A0A5F9ZHJ2;A0A499FJ16;Q07912;Q07912-3 A0A5F9ZHD0 TNK2 Activated CDC42 kinase 1 1 Y(0.998)AT(0.002)PQVIQAPGPR 97.779 0.016721 39657000 1648.5 1424.4 2747.4 1974 1563.5 1220.3 1105.3 2367.7 1234 2155.8 TRUE FALSE 1671.584086 1579.920809 2053.784891 1847.396475 1776.47517 1436.703071 1315.024905 2166.549106 1352.531214 1716.446777 0.973863046 0.920460122 1.196532813 1.07629115 1.034972476 0.837021626 0.76613206 1.262229121 0.787983194 1 10.74520941 -7.045010658 21.43317554 0.936691608 1.045606143 0.121805629 0.146850438 203.7070479 96999.90237 0.048724892 0.048731597 9.02E-08 7.045010658 0.108914535 Y(ph)DEAIDCYT(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 YDEAIDCYTK 10 0 Q9H6T3;Q9H6T3-2 Q9H6T3 RPAP3 RNA polymerase II-associated protein 3 2 Y(1)DEAIDCYT(1)K 66.595 0.022606 0 69.68 67.917 162.36 224.54 133.83 187.4 0 64.893 214.85 164.65 TRUE FALSE 70.65573498 75.33240774 121.37021 210.1390094 152.0599118 220.6327588 0 59.3799346 235.4873025 131.0942396 0.538969029 0.574643157 0.925824127 1.602961427 1.159928249 1.683008799 0 0.452956093 1.796320747 1 7.034460484 -5.827789605 4.214930523 1.070356922 0.55002387 0.141611227 0.522542003 0.439534613 15.18112613 0.145865331 0.342175425 1.49E-06 5.827789605 -0.520333052 Y(ph)DMS(ph)T(ph)QEAY(ph)ALAR ddPTM_K562_Paclitaxel_30min_R1 1 YDMSTQEAYALAR 13 0 A5LHX3 A5LHX3 PSMB11 Proteasome subunit beta type-11 4 Y(1)DMS(1)T(1)QEAY(1)ALAR 92.792 0.028924 313630000 0 0 0 51.833 0 0 0 0 0 63.787 TRUE FALSE 0 0 0 48.50866338 0 0 0 0 0 50.78717439 0 0 0 0.955136094 0 0 0 0 0 1 5.666392305 -11.16964646 4.908867417 1.000074324 0.112368952 0.469767842 0.284828142 1774474574 212.8229259 1494182.558 0.071768855 6.77E-12 11.16964646 -0.887705371 Y(ph)DSSNQVK ddPTM_K562_Paclitaxel_30min_R1 1 YDSSNQVK 8 0 O95983-2;O95983;A0A087WZ12;A0A087WT34;A0A087X1H1;A0A0A0MTS6;K7EIE8 O95983-2 MBD3 Methyl-CpG-binding domain protein 3 1 Y(0.872)DS(0.042)S(0.086)NQVK 93.162 0.026949 42661000 2983.8 2482.2 5082 3195.4 2585.5 2719.8 2262.9 3225.2 2858.9 4064.3 TRUE FALSE 3025.582406 2753.21499 3798.986247 2990.461346 2937.688873 3202.118342 2692.273462 2951.199129 3133.510119 3235.993429 0.93497792 0.850809821 1.173978356 0.924124666 0.907816699 0.989531781 0.831977419 0.911991694 0.968330186 1 11.65999296 Y(ph)EGWYMAFTRKGRPR ddPTM_K562_Paclitaxel_30min_R1 1 YEGWYMAFTRKGRPR 15 3 A0A087X1S5;P55075-2;P55075-3;P55075;P55075-4 A0A087X1S5 FGF8 Fibroblast growth factor;Fibroblast growth factor 8 1 Y(0.89)EGWY(0.092)MAFT(0.018)RKGRPR 42.395 0.030445 0 72.957 70.557 272.41 214.12 152.95 139.57 152.88 159.34 0 239.17 TRUE FALSE 73.97862309 78.26065187 203.6367264 200.3873016 173.7843795 164.3207798 181.8881819 145.8030724 0 190.4270227 0.388488052 0.410974507 1.06936885 1.052304965 0.912603563 0.862906837 0.955159511 0.765663772 0 1 7.57309441 -11.75996759 4.21570751 1.024949497 0.743570358 0.057407122 0.328501681 0.083450292 0.004751459 0.344571693 0.080623759 1.74E-12 11.75996759 -0.281379139 Y(ph)ELVQY(ph)RWPR ddPTM_K562_Paclitaxel_30min_R1 1 YELVQYRWPR 10 1 Q9NYU1 Q9NYU1 UGGT2 UDP-glucose:glycoprotein glucosyltransferase 2 2 Y(1)ELVQY(1)RWPR 50.108 0.029046 6814200 387.34 431.19 258.43 226.51 455.46 369.54 548.16 417.28 363.04 322.28 TRUE FALSE 392.763955 478.2687824 193.1861503 211.9826624 517.501363 435.0727304 652.1704984 381.8294594 397.9116141 256.5991591 1.530651762 1.863875096 0.75287133 0.826123761 2.01676952 1.695534514 2.541592501 1.488038623 1.550712853 1 8.003372632 -6.774540529 24.99085647 1.780155476 1.252665085 0.183120303 0.476669526 367.4226164 700867.8133 0.152171379 0.173578304 1.68E-07 6.774540529 -0.527490391 Y(ph)ES(ph)MLRTASSPDS(ph)LR ddPTM_K562_Paclitaxel_30min_R1 1 YESMLRTASSPDSLR 15 1 Q9UIW2 Q9UIW2 PLXNA1 Plexin-A1 3 Y(1)ES(0.978)MLRT(0.032)AS(0.094)S(0.077)PDS(0.819)LR 66.289 0.020863 8149400 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 Y(ph)FEKKWT(ph)DT(ph)FKVS ddPTM_K562_Paclitaxel_30min_R1 1 YFEKKWTDTFKVS 13 3 Q9UIF8-4;Q9UIF8-2;Q9UIF8-5;Q9UIF8-3;Q9UIF8 Q9UIF8-4 BAZ2B Bromodomain adjacent to zinc finger domain protein 2B 3 Y(1)FEKKWT(0.922)DT(0.811)FKVS(0.266) 42.475 0.029142 18519000 1899.6 1930.7 1579.5 1999.2 2075.2 2284 2352.3 2233.1 2149.7 1855.6 TRUE FALSE 1926.200261 2141.500355 1180.73569 1870.98026 2357.877373 2689.035331 2798.636645 2043.384216 2356.18829 1477.427701 1.303752636 1.449478951 0.799183397 1.266376865 1.595934184 1.820079134 1.89426301 1.383068839 1.594790925 1 10.52887182 -6.715137938 4.861173238 1.599172034 1.185657849 0.25845981 0.278609859 0.24114254 12.44393007 0.084124404 0.106968881 1.93E-07 6.715137938 -0.413514185 Y(ph)FS(ph)LDLT(ph)HDEVPEFVV ddPTM_K562_Paclitaxel_30min_R1 1 YFSLDLTHDEVPEFVV 16 0 Q96NE9-3;Q96NE9-2;Q96NE9 Q96NE9-3 FRMD6 FERM domain-containing protein 6 3 Y(1)FS(1)LDLT(1)HDEVPEFVV 54.09 0.029689 0 0 0 0 0 0 51.73 0 0 0 0 TRUE FALSE 0 0 0 0 0 60.90358917 0 0 0 0 0 Y(ph)GGSHYSSSGYSNSRYSRY(ph)HSSRSHSK ddPTM_K562_Paclitaxel_30min_R1 1 YGGSHYSSSGYSNSRYSRYHSSRSHSK 27 3 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 2 Y(0.403)GGS(0.085)HY(0.079)S(0.085)S(0.085)S(0.085)GY(0.058)S(0.061)NS(0.061)RY(0.053)S(0.056)RY(0.26)HS(0.257)S(0.298)RS(0.061)HS(0.014)K 43.162 0.026732 0 234.94 232 336.13 301.88 149.27 51.919 261.16 281.81 163.99 263.75 TRUE FALSE 238.2298849 257.3305446 251.2698243 282.518768 169.6031012 61.12610567 310.7137467 257.8684815 179.7419722 209.9976052 1.13444096 1.22539752 1.196536618 1.345342808 0.807643025 0.291080013 1.479606143 1.227959153 0.855923914 1 7.714229066 -6.75894542 24.9998818 0.949264102 1.223363421 0.183447238 0.29103146 131.8179278 1321353.12 0.093988127 0.115690337 1.74E-07 6.75894542 0.274099319 Y(ph)GLIST(ph)GSDSESPATR ddPTM_K562_Paclitaxel_30min_R1 1 YGLISTGSDSESPATR 16 0 O14529 O14529 CUX2 Homeobox protein cut-like 2 2 Y(1)GLIS(0.097)T(0.399)GS(0.097)DS(0.399)ES(0.004)PAT(0.004)R 77.42 0.013987 0 1346.1 996.9 1611 1190.8 1184.1 1117 1344.1 1141.2 1162.9 1373.9 TRUE FALSE 1364.949553 1105.744913 1204.283125 1114.427418 1345.394467 1315.084267 1599.135958 1044.247937 1274.601741 1093.898426 1.247784548 1.010829605 1.10090946 1.018766817 1.229908038 1.202199615 1.461868781 0.954611427 1.165192042 1 10.09526307 -4.959552804 14.84492195 1.137050067 1.688813922 0.056902193 0.142288964 2999678.48 33133520.14 0.035891076 43864723.9 1.10E-05 4.959552804 0.551763855 Y(ph)GRS(ph)RNKTQDFEELSSIR ddPTM_K562_Paclitaxel_30min_R1 1 YGRSRNKTQDFEELSSIR 18 3 B5MCX4;Q92519 B5MCX4 TRIB2 Tribbles homolog 2 2 Y(0.991)GRS(0.991)RNKT(0.008)QDFEELS(0.008)S(0.001)IR 42.338 0.028861 5119400 929.45 834.23 640.54 923.24 879.94 837.57 942.45 940.07 865.01 1353.6 TRUE FALSE 942.4651676 925.3140526 478.8277549 864.0275187 999.8027255 986.1012794 1121.274968 860.2051858 948.0980755 1077.735577 0.874486458 0.858572429 0.444290571 0.801706408 0.927688337 0.914975158 1.040398955 0.798159775 0.879713072 1 10.07378754 -6.616782278 4.780412249 0.920727328 0.722181868 0.344487981 0.125434911 0.248957352 9.741483596 0.038898319 0.050831065 2.42E-07 6.616782278 -0.19854546 Y(ph)IILIWGINK ddPTM_K562_Paclitaxel_30min_R1 1 YIILIWGINK 10 0 Q6DN12-3;Q6DN12-2;Q6DN12 Q6DN12-3 MCTP2 Multiple C2 and transmembrane domain-containing protein 2 1 Y(1)IILIWGINK 114.89 0.010508 7388500 2862.8 3129 4451.6 3045.5 2451.4 2929 2795.6 3707.3 3417.8 4081.3 TRUE FALSE 2902.888032 3470.634802 3327.738523 2850.175261 2785.322183 3448.417025 3326.050506 3392.341725 3746.094961 3249.52882 0.893325831 1.068042475 1.024068014 0.877104165 0.857146478 1.061205244 1.023548548 1.043948804 1.152811736 1 11.66601483 -7.306050298 24.86705741 1.057002571 0.951570842 0.38283919 0.071000801 525.1137657 292707.6294 0.026684952 0.023534023 4.94E-08 7.306050298 -0.105431729 Y(ph)IRLHPT(ph)HYS(ph)IRS(ph)T(ph)LR ddPTM_K562_Paclitaxel_30min_R1 1 YIRLHPTHYSIRSTLR 16 2 A0A2R8Y707;P00451-2;P00451 A0A2R8Y707 F8 "Coagulation factor VIII;Factor VIIIa heavy chain, 200 kDa isoform;Factor VIIIa heavy chain, 92 kDa isoform;Factor VIII B chain;Factor VIIIa light chain" 5 Y(1)IRLHPT(1)HY(0.556)S(0.826)IRS(0.826)T(0.792)LR 61.862 0.019245 25619000 1180.3 1113.5 1386.2 977.22 1124.3 1146.3 1120.5 1284 1095.4 1360.6 TRUE FALSE 1196.827842 1235.075696 1036.236666 914.5454831 1277.448695 1349.58021 1333.109026 1174.916186 1200.618064 1083.308973 1.104789004 1.140095509 0.956547662 0.844214814 1.179209926 1.245794361 1.230589849 1.084562405 1.10828775 1 10.08122906 Y(ph)KEVAELT(ph)RLR ddPTM_K562_Paclitaxel_30min_R1 1 YKEVAELTRLR 11 2 A0A087WUZ3;Q01082;Q01082-3;Q01082-2 A0A087WUZ3;Q01082-3 SPTBN1 "Spectrin beta chain, non-erythrocytic 1" 2 Y(1)KEVAELT(1)RLR 64.82 0.02121 31457000 146.99 203.26 139.53 297.44 192.09 297.44 299.99 269.29 119.84 255.45 TRUE FALSE 149.0483135 225.4526142 104.3039258 278.3635297 218.2559101 350.1868077 356.9115364 246.4121336 131.3511675 203.3891498 0.732823327 1.108479063 0.512829352 1.368625268 1.07309515 1.721757567 1.754820927 1.211530379 0.645812068 1 7.668098907 -6.279844416 24.86237355 1.295338695 0.817087413 0.279958232 0.338885866 976.2077023 1318703.868 0.09998316 0.14861149 5.25E-07 6.279844416 -0.478251282 Y(ph)KTNSS(ph)TKVLQDASNSIDHR ddPTM_K562_Paclitaxel_30min_R1 1 YKTNSSTKVLQDASNSIDHR 20 2 H0Y4A4;A0A2R8Y6E3;P81274 H0Y4A4 GPSM2 G-protein-signaling modulator 2 2 Y(0.849)KT(0.145)NS(0.02)S(0.449)T(0.449)KVLQDAS(0.084)NS(0.003)IDHR 46.159 0.027519 12456000 3186.7 3238 4172.1 3696.6 3136.9 3054.8 2189.4 2995.4 3467.6 3204.3 TRUE FALSE 3231.323632 3591.53579 3118.801755 3459.516621 3564.198888 3596.525888 2604.827221 2740.922073 3800.678474 2551.261901 1.266558965 1.407748765 1.222454564 1.356002149 1.397033714 1.409704698 1.020995618 1.07433975 1.489724937 1 11.31699529 -7.749044897 24.9999878 1.152460036 1.343715815 0.32569924 0.138738389 278.509998 561762.4556 0.052439076 0.040327927 1.78E-08 7.749044897 0.191255779 Y(ph)KVAKRGR ddPTM_K562_Paclitaxel_30min_R1 2 YKVAKRGR 8 3 A0A1B0GX95;A0A0J9YYF1 A0A1B0GX95 1 Y(1)KVAKRGR;Y(1)KVAKRGR 56.721 0.027483 38739000 7022.3 6455.8 8598.3 7291.8 6334.5 6103.6 6132 7470.9 6829.7 8351.1 TRUE FALSE 7120.633866 7160.666076 6427.552823 6824.136585 7197.366144 7185.987761 7295.514989 6836.200413 7485.723201 6649.141236 1.070910304 1.076930963 0.96667413 1.026318489 1.082450483 1.080739227 1.097211614 1.028132833 1.125818047 1 12.69895231 -6.758751939 24.96096933 1.072457016 1.033293335 0.125076109 0.043184898 132.3368522 1229131.827 0.012848064 0.015872826 1.74E-07 6.758751939 -0.039163681 Y(ph)KY(ph)T(ph)ASVLIAESGQPVVPLDR ddPTM_K562_Paclitaxel_30min_R1 1 YKYTASVLIAESGQPVVPLDR 21 1 I3L2N4;I3L0U4;Q96NB1 I3L2N4 FOPNL LisH domain-containing protein FOPNL 3 Y(0.944)KY(0.944)T(0.937)AS(0.175)VLIAESGQPVVPLDR 59.242 0.0095473 20254000 402 587.13 342.25 472.62 552.57 525.34 552.85 645.37 556.54 511.04 TRUE FALSE 407.6292403 651.2348389 255.8447546 442.3082686 627.8393891 618.5016729 657.7504014 590.5417902 609.9981537 406.8897675 1.001817379 1.600519086 0.628781491 1.08704692 1.543020836 1.520071829 1.616532177 1.451355717 1.499173001 1 8.66849419 -6.754941289 24.85806276 1.473921029 1.084556698 0.291093575 0.270885747 171.5825871 656375.0032 0.07869181 0.099134446 1.76E-07 6.754941289 -0.389364331 Y(ph)LAFT(ph)EEK ddPTM_K562_Paclitaxel_30min_R1 1 YLAFTEEK 8 0 O14497-2;O14497;H0Y488;A0A1B0GTU5;O14497-3;A0A087WUV6 O14497-2 ARID1A AT-rich interactive domain-containing protein 1A 2 Y(1)LAFT(1)EEK 84.213 0.022154 40628000 1823.4 1732.1 3020.9 2621 2467.6 2322.7 1600.9 1873.1 1907.7 1745.1 TRUE FALSE 1848.933226 1921.216536 2258.236433 2452.900791 2803.728897 2734.598233 1904.662418 1713.968463 2090.943109 1389.447662 1.330696561 1.382719614 1.625276356 1.765378328 2.017872982 1.96811892 1.370805443 1.233561011 1.504873603 1 10.44029578 -7.937723077 8.787954905 1.281845112 1.684283283 0.421409278 0.23439899 0.336511135 43.55354317 0.109599897 0.07376805 1.15E-08 7.937723077 0.402438171 Y(ph)LCNSPQKPNDR ddPTM_K562_Paclitaxel_30min_R1 1 YLCNSPQKPNDR 12 1 G3V1R7;O14975-2;O14975 G3V1R7 SLC27A2 Very long-chain acyl-CoA synthetase 1 Y(0.994)LCNS(0.006)PQKPNDR 77.288 0.023799 101670000 1018.1 1035.8 825.45 1115.8 917.63 1087.7 1077.9 1047.3 981.47 1043 TRUE FALSE 1032.356541 1148.892147 617.0549385 1044.237582 1042.626742 1280.588323 1282.425898 958.325328 1075.744579 830.4360275 1.243149992 1.383480616 0.743049336 1.257456984 1.255517231 1.542067397 1.54428018 1.154002592 1.295397289 1 9.697725224 -6.510410854 24.14916581 1.323959995 1.12441893 0.111283412 0.214965218 755.3928082 1463127.853 0.062948172 0.08820871 3.09E-07 6.510410854 -0.199541065 Y(ph)LGS(ph)VDS(ph)KY(ph)SSSFLDSGWR ddPTM_K562_Paclitaxel_30min_R1 1 YLGSVDSKYSSSFLDSGWR 19 1 B4DF77;Q6VY07;Q6VY07-2;E9PNZ9 B4DF77 PACS1 Phosphofurin acidic cluster sorting protein 1 4 Y(0.998)LGS(0.997)VDS(0.998)KY(0.912)S(0.091)S(0.002)S(0.002)FLDS(0.001)GWR 53.504 0.019442 87708000 2799.9 3131.4 3144.6 2985.8 3050.2 2914.6 2994.5 3443 2564.5 3252.6 TRUE FALSE 2839.107238 3473.296842 2350.706838 2794.304152 3465.68888 3431.463387 3562.690743 3150.495659 2810.831683 2589.718335 1.096299625 1.341187107 0.907707532 1.078999254 1.338249351 1.325033437 1.375705881 1.216539891 1.085381235 1 11.33857948 -4.9726077 17.0586207 1.196651173 0.801999421 0.024619294 0.154357352 26826112.85 433025650.5 0.040194252 302068095.4 1.07E-05 4.9726077 -0.394651753 Y(ph)LKSIINS(ph)MS(ph)ES(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 YLKSIINSMSESR 13 1 Q9H7X7-3;Q9H7X7-2;Q9H7X7 Q9H7X7-3 IFT22 Intraflagellar transport protein 22 homolog 4 Y(0.911)LKS(0.095)IINS(0.996)MS(0.999)ES(1)R 50.608 0.030033 52855000 170.73 243.55 313.28 236.01 156.21 153.51 274.11 168 201.99 207.58 TRUE FALSE 173.1207467 270.1416126 234.1885894 220.8733749 177.4884467 180.7328431 326.1209415 153.7273514 221.392042 165.2750821 1.047470342 1.63449692 1.416962475 1.336398519 1.073897193 1.093527475 1.973200905 0.930130238 1.339536724 1 7.368725421 -8.924292299 1.484906759 1.029967509 1.345743206 0.089160033 0.296257683 0.93868377 4.618376306 0.275193548 0.082310029 1.19E-09 8.924292299 0.315775697 Y(ph)LLGDAPVSPSSQK ddPTM_K562_Paclitaxel_30min_R1 1 YLLGDAPVSPSSQK 14 0 Q9NYB0;A0A590UJT3;H3BMI8 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 1 Y(0.964)LLGDAPVS(0.035)PSSQK 123.96 0.00096917 115890000 4750.2 4047.3 8476.5 5364.4 4457.4 3820.9 3905.5 5553.4 4599.5 6215.1 TRUE FALSE 4816.717456 4489.197901 6336.502739 5020.351394 5064.573344 4498.482967 4646.548237 5081.604007 5041.302526 4948.459208 0.973377218 0.907191049 1.280500146 1.014528196 1.023464705 0.909067404 0.938988894 1.026906314 1.018762066 1 12.27276367 -6.905377916 3.315766632 0.977417521 1.051088905 0.090086733 0.095851086 0.609651422 13.32508887 0.032757895 0.037576068 1.24E-07 6.905377916 0.073671384 Y(ph)MAICY(ph)PLHYPVIVS(ph)GR ddPTM_K562_Paclitaxel_30min_R1 1 YMAICYPLHYPVIVSGR 17 0 O95222 O95222 OR6A2 Olfactory receptor 6A2 3 Y(1)MAICY(0.938)PLHY(0.066)PVIVS(0.996)GR 55.173 0.030271 27829000 1810.6 1773.5 2611.6 1569 1557.5 1342.4 1277.4 1832.1 1683.5 1900.2 TRUE FALSE 1835.953986 1967.136728 1952.26928 1468.371363 1769.657869 1580.455792 1519.779982 1676.451669 1845.207697 1512.938197 1.213502303 1.300209573 1.290382703 0.970542859 1.169682854 1.044626803 1.004522184 1.108076769 1.219618687 1 10.56313734 -6.244021822 24.73511212 1.078254961 1.271249359 0.57638156 0.076200215 518.6166405 736499.4749 0.020496494 0.035390987 5.70E-07 6.244021822 0.192994398 Y(ph)NVTTS(ph)KQLYTVAVS(ph)CLLLAS(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 YNVTTSKQLYTVAVSCLLLASK 22 1 E5RFJ6;E7EN43;B4DZA8 E5RFJ6 CCNJL 4 Y(0.315)NVT(0.358)T(0.386)S(0.407)KQLY(0.38)T(0.154)VAVS(1)CLLLAS(1)K 47.73 0.019923 102000000 2216.3 2006.5 3823.5 2636.9 2114.2 1758.6 2084.1 2593.9 1622.5 3047.8 TRUE FALSE 2247.335038 2225.576456 2858.210137 2467.781036 2402.189834 2070.463018 2479.547095 2373.532004 1778.348375 2426.656687 0.926103412 0.917136926 1.177838691 1.016946917 0.989917464 0.853216291 1.021795588 0.97810787 0.732838882 1 11.2447543 -7.047237965 9.594238214 0.922188836 1.013532259 0.159370326 0.101812645 1.06758412 211.9325904 0.03417994 0.034358048 8.97E-08 7.047237965 0.091343422 Y(ph)PPMKVLMLTLQNDPPT(ph)LETGVEDK ddPTM_K562_Paclitaxel_30min_R1 1 YPPMKVLMLTLQNDPPTLETGVEDK 25 1 Q9UEW8-2;Q9UEW8 Q9UEW8-2 STK39 STE20/SPS1-related proline-alanine-rich protein kinase 2 Y(0.931)PPMKVLMLT(0.07)LQNDPPT(0.5)LET(0.5)GVEDK 43.198 0.023336 8968500 543.87 402.67 289.8 494.33 426.96 518.86 453.45 471.53 724.91 451.52 TRUE FALSE 551.485858 446.6348723 216.6364058 462.6258863 485.1191805 610.8725358 539.4897703 431.4705833 794.5408445 359.4999762 1.534035868 1.242378031 0.602604785 1.286859296 1.349427573 1.699228307 1.500667055 1.200196417 2.210127669 1 8.489847865 -6.819739963 2.788519823 1.530146493 1.121292182 0.169230146 0.368652066 0.439028217 6.957145608 0.118777421 0.143803335 1.51E-07 6.819739963 -0.408854311 Y(ph)RGGNT(ph)RT(ph)GKALT(ph)FIK ddPTM_K562_Paclitaxel_30min_R1 1 YRGGNTRTGKALTFIK 16 3 H0Y5N9;A0A087X0A8;D6RGG3;Q99715-2;Q99715-4;Q99715 H0Y5N9 COL12A1 Collagen alpha-1(XII) chain 4 Y(1)RGGNT(1)RT(1)GKALT(1)FIK 50.884 0.025491 13776000 1269.6 1278.1 1286.2 1001.5 964.04 1210.9 930.25 1317.5 911.11 1182.2 TRUE FALSE 1287.378317 1417.64728 961.4829025 937.2682725 1095.358569 1425.636113 1106.760081 1205.570151 998.6261864 941.2669911 1.367707918 1.506105381 1.02147734 0.99575177 1.163706557 1.5145927 1.175819498 1.280795102 1.060938284 1 9.878460192 -15 0.094305176 0.281366128 1.403615169 0.179651112 0.172183169 431.2551017 2.796047983 62.25149119 3.854283725 1.00E-15 15 1.122249041 Y(ph)RIQEQES(ph)SGEEDSDLSPEER ddPTM_K562_Paclitaxel_30min_R1 1 YRIQEQESSGEEDSDLSPEER 21 1 E7EMN6;Q6NXS1;P41236 E7EMN6 PPP1R2;PPP1R2P3 Protein phosphatase inhibitor 2-like protein 3;Protein phosphatase inhibitor 2 2 Y(0.968)RIQEQES(0.811)S(0.19)GEEDS(0.021)DLS(0.011)PEER 71.696 0.011514 24942000 1675.8 1592.1 2715.5 1993.2 1565.9 1629 1746.1 2620.7 1942.1 2519.9 TRUE FALSE 1699.26637 1765.930862 2029.93844 1865.365073 1779.202091 1917.880278 2077.41336 2398.055177 2128.647383 2006.342997 0.846947094 0.880173961 1.011760423 0.929733887 0.886788597 0.955908477 1.035422838 1.195236897 1.060958862 1 10.97035255 -7.807785162 2.881337823 1.09845201 0.917070458 0.608424462 0.061574456 0.168282905 2.844814767 0.028331051 0.018673608 1.56E-08 7.807785162 -0.181381551 Y(ph)RS(ph)S(ph)ARSS(ph)VSSHR ddPTM_K562_Paclitaxel_30min_R1 1 YRSSARSSVSSHR 13 2 Q5VUA4;Q5VUA4-2 Q5VUA4 ZNF318 Zinc finger protein 318 4 Y(1)RS(1)S(0.977)ARS(0.048)S(0.935)VS(0.022)S(0.018)HR 79.804 0.011163 132710000 127.24 0 101.84 126.51 0 0 0 0 0 0 TRUE FALSE 129.0217526 0 76.12923246 118.3962148 0 0 0 0 0 0 0 Y(ph)S(ph)CVATNEAGEMIK ddPTM_K562_Paclitaxel_30min_R1 1 YSCVATNEAGEMIK 14 0 Q96RW7-2;Q96RW7 Q96RW7-2 HMCN1 Hemicentin-1 2 Y(0.993)S(0.995)CVAT(0.012)NEAGEMIK 55.806 0.028869 0 135.34 296.82 396.84 338.46 297.93 229.02 151.14 256.95 234.82 218.58 TRUE FALSE 137.2351776 329.2278114 296.6528339 316.7526905 338.51311 269.6334814 179.818026 235.1204937 257.3755102 174.033276 0.788557112 1.891752077 1.704575359 1.820069689 1.945105659 1.549321415 1.033239333 1.351008836 1.478886774 1 7.443219373 -7.58528382 7.021609459 1.247982211 1.667850088 0.257033379 0.331134219 0.30693189 28.09480114 0.125928169 0.097355636 2.60E-08 7.58528382 0.419867877 Y(ph)S(ph)EREEKTGES(ph)VQS(ph)R ddPTM_K562_Paclitaxel_30min_R1 1 YSEREEKTGESVQSR 15 2 Q6PIJ6;Q6PIJ6-2;Q6PIJ6-3 Q6PIJ6 FBXO38 F-box only protein 38 4 Y(0.999)S(0.999)EREEKT(0.058)GES(0.949)VQS(0.995)R 48.711 0.030161 5713100 351.77 273.08 338.21 343.79 334.02 315.59 212.14 321.55 280.76 394.89 TRUE FALSE 356.6958653 302.8957979 252.8247026 321.7408481 379.519179 371.5554554 252.3924576 294.2323204 307.7282525 314.4112012 1.134488415 0.963374704 0.804121169 1.023312296 1.207079066 1.181750058 0.802746392 0.935820096 0.978744559 1 8.296508806 -7.766679926 24.99789633 0.923979477 1.042739285 0.200725153 0.119155476 258.8200064 1234579.379 0.054430811 0.037937562 1.71E-08 7.766679926 0.118759808 Y(ph)S(ph)GNAVVESY(ph)S(ph)VLGNCR ddPTM_K562_Paclitaxel_30min_R1 1 YSGNAVVESYSVLGNCR 17 0 A0A5H1ZRP3;O43151-2;O43151 A0A5H1ZRP3 TET3 Methylcytosine dioxygenase TET3 4 Y(0.999)S(0.998)GNAVVES(0.164)Y(0.84)S(0.998)VLGNCR 50.944 0.023822 28227000 790.83 849.24 803.91 724.66 823.26 931.04 601.3 857.72 656.85 481.83 TRUE FALSE 801.9040599 941.9628951 600.9529779 678.1835511 935.4019499 1096.146872 715.393536 784.8513323 719.9433774 383.6327815 2.090290764 2.455376445 1.566479735 1.767793535 2.438274295 2.857281558 1.864787293 2.045840111 1.876647179 1 8.583582194 -9.34933902 1.240431745 1.001073675 2.154679076 0.485336371 0.352904002 1.16530426 2.894622159 0.363140337 0.11025021 4.47E-10 9.34933902 1.153605401 Y(ph)S(ph)VLLVLTDGVVSDMAETR ddPTM_K562_Paclitaxel_30min_R1 1 YSVLLVLTDGVVSDMAETR 19 0 O95741;O95741-2 O95741 CPNE6 Copine-6 2 Y(0.983)S(0.985)VLLVLT(0.021)DGVVS(0.011)DMAETR 53.869 0.029871 0 257.99 345.28 607.04 402.4 357.16 376.51 595.62 394.2 165.43 490.08 TRUE FALSE 261.602656 382.9788381 453.7852442 376.5918651 405.8112388 443.278762 708.6357857 360.7102495 181.3202907 390.201427 0.670429778 0.981490101 1.162951268 0.965121701 1.040004497 1.136025477 1.816076869 0.924420631 0.464683823 1 8.608075244 -5.306402706 2.929609006 1.086073874 0.620605609 0.120294032 0.312836141 0.753969585 9.836636899 0.084388459 0.78266479 4.94E-06 5.306402706 -0.465468265 Y(ph)S(ph)Y(ph)GHLPT(ph)HS(ph)ITAHPMVTIRISDRQR ddPTM_K562_Paclitaxel_30min_R1 4 YSYGHLPTHSITAHPMVTIRISDRQR 26 2 I3L141;O43149-2;O43149 I3L141 ZZEF1 Zinc finger ZZ-type and EF-hand domain-containing protein 1 5 Y(0.941)S(0.944)Y(0.941)GHLPT(0.941)HS(0.793)IT(0.395)AHPMVT(0.023)IRIS(0.023)DRQR;Y(0.906)S(0.912)Y(0.906)GHLPT(0.978)HS(0.87)IT(0.426)AHPMVT(0.001)IRIS(0.001)DRQR;Y(0.933)S(0.938)Y(0.933)GHLPT(0.939)HS(0.627)IT(0.627)AHPMVT(0.002)IRIS(0.002)DRQR;Y(0.857)S(0.866)Y(0.857)GHLPT(0.95)HS(0.732)IT(0.732)AHPMVT(0.003)IRIS(0.003)DRQR 59.356 0.001751 4018706000 120.09 149.98 286.02 133.97 59.048 61.934 183.43 179.56 0 0 TRUE FALSE 121.7716305 166.3553236 213.8107135 125.3777638 67.09133729 72.9171253 218.2348849 164.3052572 0 0 0 Y(ph)SEAIT(ph)QSVLK ddPTM_K562_Paclitaxel_30min_R1 1 YSEAITQSVLK 11 0 O60287 O60287 URB1 Nucleolar pre-ribosomal-associated protein 1 2 Y(0.688)S(0.312)EAIT(0.407)QS(0.593)VLK 101.39 0.0078338 153310000 7294.6 7315.1 7302.6 7987.5 7918.3 6889 8143.2 7875.8 6396.5 6959.3 TRUE FALSE 7396.746906 8113.787356 5458.968313 7475.217501 8996.906518 8110.667424 9688.32969 7206.701631 7010.912405 5540.99084 1.334914119 1.464320659 0.985197137 1.349075953 1.623699944 1.463757595 1.748483253 1.300616052 1.265281356 1 12.43592827 -9.040154878 2.093465671 1.004616462 1.416599422 0.304576211 0.191077286 0.477115803 4.775418514 0.195945568 0.054453218 9.12E-10 9.040154878 0.41198296 Y(ph)SLTVAVK ddPTM_K562_Paclitaxel_30min_R1 1 YSLTVAVK 8 0 P00519-2;P00519;P42684-8;P42684-4;P42684-7;P42684-10;P42684-5;P42684-2;P42684-6;P42684-3;P42684 P00519-2;P42684-4 ABL1;ABL2 Tyrosine-protein kinase ABL1;Abelson tyrosine-protein kinase 2 1 Y(0.69)S(0.216)LT(0.094)VAVK 103.56 0.022934 27351000 2066.4 1346.9 3361.5 2203.2 1938.9 1616.5 1505.2 2404.3 1860.5 2847.1 TRUE FALSE 2095.335975 1493.959097 2512.84775 2061.896613 2203.011006 1903.163578 1790.803842 2200.039708 2039.209338 2266.859457 0.924334311 0.659043547 1.108515017 0.909582906 0.971833961 0.839559582 0.789993326 0.970523206 0.899574665 1 11.14647923 -9.242379584 1.343502501 0.998641818 0.891872946 0.070478928 0.113084985 2.570334565 8.472560646 0.107406942 0.032116836 5.72E-10 9.242379584 -0.106768872 Y(ph)T(ph)LHVVDS(ph)LPLFVHDHFPK ddPTM_K562_Paclitaxel_30min_R1 1 YTLHVVDSLPLFVHDHFPK 19 0 Q8N6R0-2 Q8N6R0-2 3 Y(1)T(1)LHVVDS(1)LPLFVHDHFPK 50.539 0.030842 9171000 930.22 692.28 1269.1 951.67 916.79 939.72 780.69 1101.5 830.8 1262.4 TRUE FALSE 943.24595 767.8654715 948.700009 890.6341457 1041.672319 1106.366148 928.821852 1007.9207 910.6020521 1005.122187 0.938439089 0.763952365 0.943865354 0.886095399 1.03636387 1.100728013 0.924088498 1.002784251 0.905961548 1 9.973155177 -6.743142592 19.86733278 0.996868816 0.878918751 0.389391391 0.068543419 23.06813087 25046.24438 0.020390665 0.026205345 1.81E-07 6.743142592 -0.117950065 Y(ph)T(ph)VSNLS(ph)MQTHAARFK ddPTM_K562_Paclitaxel_30min_R1 1 YTVSNLSMQTHAARFK 16 1 A0A669KBC7;Q13489 A0A669KBC7 BIRC3 Baculoviral IAP repeat-containing protein 3 3 Y(0.797)T(0.808)VS(0.394)NLS(0.767)MQT(0.234)HAARFK 48.568 0.0303 0 243.39 364.8 511.17 385.56 337.18 450.92 391.09 385.74 305.09 467.09 TRUE FALSE 246.7982109 404.6300977 382.1188114 360.8319073 383.1096245 530.8843308 465.2972859 352.9689793 334.3952577 371.8968016 0.663620149 1.088017149 1.027486146 0.970247407 1.030150361 1.427504427 1.251146242 0.949104638 0.899161424 1 8.53875853 -5.260813072 24.14796971 1.080752905 0.663619942 0.399544111 0.149586254 36.09540612 1391173.568 0.040893279 0.236752766 5.49E-06 5.260813072 -0.417132963 Y(ph)T(ph)YAWVLLLPLLLT(ph)DNINVFLK ddPTM_K562_Paclitaxel_30min_R1 1 YTYAWVLLLPLLLTDNINVFLK 22 0 E9PMS6 E9PMS6 LMO7 3 Y(0.777)T(0.881)Y(0.342)AWVLLLPLLLT(1)DNINVFLK 44.089 0.022096 26799000 232.27 345.25 235.48 316.36 372.81 246.52 312.73 217.77 564.03 505.55 TRUE FALSE 235.5224966 382.9455626 176.0301616 296.0700856 423.5930337 290.2368607 372.0688849 199.2690792 618.2076017 402.5186325 0.585121973 0.951373506 0.437321772 0.735543803 1.052356337 0.721051989 0.924351955 0.495055541 1.53584841 1 8.652911757 -8.760630833 24.99999995 1.267924202 0.750951 0.474182205 0.22296322 17.4303401 539090.6251 0.163666881 0.053530879 1.74E-09 8.760630833 -0.516973202 Y(ph)TVGY(ph)S(ph)FS(ph)LISLFLALT(ph)LLLFLR ddPTM_K562_Paclitaxel_30min_R1 1 YTVGYSFSLISLFLALTLLLFLR 23 0 E9PC86;I3L0P5 E9PC86 GLP2R 5 Y(0.705)T(0.633)VGY(0.705)S(0.798)FS(0.806)LIS(0.36)LFLALT(0.994)LLLFLR 42.659 0.023931 109670000 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 Y(ph)VGTGGIDQK ddPTM_K562_Paclitaxel_30min_R1 1 YVGTGGIDQK 10 0 Q9UHN6-2;Q9UHN6 Q9UHN6-2 TMEM2 Transmembrane protein 2 1 Y(0.634)VGT(0.366)GGIDQK 100.02 0.017249 70745000 1158.4 878.32 1276 1116.5 1275.7 912.81 1195.4 1405.1 1291.6 1642.8 TRUE FALSE 1174.621174 974.2179479 953.8580186 1044.892687 1449.471938 1074.684037 1422.22091 1285.727985 1415.663951 1307.996458 0.898030852 0.744816962 0.729251224 0.798849783 1.108161974 0.821626106 1.087327799 0.982975127 1.08231482 1 10.35314292 -6.701939938 8.916317658 1.006809763 0.783905284 0.60837026 0.086655667 0.205830349 28.50634493 0.024709151 0.031858291 1.99E-07 6.701939938 -0.22290448 Y(ph)Y(ph)AT(ph)ITGQFGLVK ddPTM_K562_Paclitaxel_30min_R1 2 YYATITGQFGLVK 13 0 Q6ZRK6-2;Q6ZRK6 Q6ZRK6-2 CCDC73 Coiled-coil domain-containing protein 73 3 Y(1)Y(1)AT(0.5)IT(0.5)GQFGLVK;Y(1)Y(1)AT(0.5)IT(0.5)GQFGLVK 133.32 0.00020697 94539000 1715.19 1588.32 1839.32 1614.01 1665.54 1296.79 1555.26 1603.85 1340.59 1601.17 TRUE FALSE 1739.207952 1761.738149 1374.960918 1510.494623 1892.414746 1526.757499 1850.362466 1467.592932 1469.359659 1274.850675 1.364244445 1.381917258 1.078527034 1.18484043 1.484420711 1.197597121 1.451434668 1.151188104 1.152573935 1 10.31611256 -8.815545535 1.748158233 1.014048277 1.297036844 0.374086022 0.123543101 0.368453495 2.302127133 0.117548028 0.034526893 1.53E-09 8.815545535 0.282988567 Y(ph)Y(ph)KS(ph)ALVQIYELEEHKIET(ph)WR ddPTM_K562_Paclitaxel_30min_R1 1 YYKSALVQIYELEEHKIETWR 21 2 F8VSL2;F8VPF5;F8VVA3;F8VZX1;H0YIC9;F8VYY9;P54619-2;P54619;P54619-3 F8VSL2 PRKAG1 5-AMP-activated protein kinase subunit gamma-1 4 Y(0.989)Y(0.989)KS(0.99)ALVQIY(0.032)ELEEHKIET(0.999)WR 46.131 0.022715 10136000 0 0 0 136.06 0 66.257 0 0 0 0 TRUE FALSE 0 0 0 127.3337206 0 78.00674866 0 0 0 0 0 Y(ph)Y(ph)PPVEPPPAAWGEIR ddPTM_K562_Paclitaxel_30min_R1 1 YYPPVEPPPAAWGEIR 16 0 A0A087X115;Q49A17-2;Q49A17 A0A087X115 GALNTL6 Polypeptide N-acetylgalactosaminyltransferase;Polypeptide N-acetylgalactosaminyltransferase-like 6 2 Y(1)Y(1)PPVEPPPAAWGEIR 58.274 0.029936 17373000 0 0 0 113.46 0 0 0 0 0 0 TRUE FALSE 0 0 0 106.1831834 0 0 0 0 0 0 0 YACGLWGLS(ph)PASR ddPTM_K562_Paclitaxel_30min_R1 2 YACGLWGLSPASR 13 0 Q15637-6;H7C0N4;H7C561 Q15637-6 SF1 Splicing factor 1 1 YACGLWGLS(1)PASR;YACGLWGLS(0.992)PAS(0.008)R 157.33 0.00071552 84381000 1920.92 2044.62 2647.3 2072.24 1747.3 1730.27 1740.07 2249.2 2123 2288.29 TRUE FALSE 1947.818807 2267.858526 1978.956374 1939.335801 1985.311842 2037.10909 2070.239199 2058.116421 2326.923636 1821.935242 1.069093325 1.244752543 1.086183706 1.064437284 1.089672013 1.118101809 1.13628583 1.129632038 1.277171429 1 10.83125597 -7.992435605 2.458861458 1.151375169 1.113794875 0.009986451 0.078815978 1.178004868 14.22043048 0.041423084 0.023040579 1.02E-08 7.992435605 -0.037580294 YADSPGAS(ph)SPEQPK ddPTM_K562_Paclitaxel_30min_R1 2 YADSPGASSPEQPK 14 0 A0A0U1RRL5;P32519-2;P32519 A0A0U1RRL5 ELF1 ETS-related transcription factor Elf-1 1 YADS(0.003)PGAS(0.499)S(0.499)PEQPK;YADS(0.13)PGAS(0.435)S(0.435)PEQPK 159 7.18E-06 13692200 7318.7 7087.6 13197.5 8359.1 6621.9 5912.2 5564.1 8597.4 7055.9 10323.4 TRUE FALSE 7421.18438 7861.448137 9865.6279 7822.98474 7523.91489 6960.645659 6619.858928 7866.997207 7733.650722 8219.485413 0.902877006 0.956440427 1.200273181 0.951760888 0.915375417 0.84684689 0.805386055 0.957115538 0.940892323 1 13.00483236 -6.515520283 23.54945829 0.903333296 1.023937183 0.232974167 0.087682845 215.8017845 690636.8282 0.026525389 0.035813174 3.05E-07 6.515520283 0.120603887 YADSPGAS(ph)SPEQPKR ddPTM_K562_Paclitaxel_30min_R1 2 YADSPGASSPEQPKR 15 1 A0A0U1RRL5;P32519-2;P32519 A0A0U1RRL5 ELF1 ETS-related transcription factor Elf-1 1 YADSPGAS(0.5)S(0.5)PEQPKR;YADSPGAS(0.5)S(0.5)PEQPKR 124.81 0.00049768 11301900 4352.8 4191.4 7671 5047.7 4005.4 3422.9 3165.9 4733.9 4357.8 6101.7 TRUE FALSE 4413.75263 4649.031226 5734.361176 4723.963115 4551.003292 4029.903255 3766.612998 4331.725647 4776.386161 4858.170191 0.908521615 0.956951083 1.180354115 0.972374974 0.936773129 0.829510515 0.77531516 0.891637278 0.983165672 1 12.24619732 -6.82582851 2.99836188 0.882465628 1.016294638 0.234069776 0.090578813 0.334980007 6.111596184 0.030804459 0.036983602 1.49E-07 6.82582851 0.13382901 YADSPGASS(ph)PEQPK ddPTM_K562_Paclitaxel_30min_R1 2 YADSPGASSPEQPK 14 0 A0A0U1RRL5;P32519-2;P32519 A0A0U1RRL5 ELF1 ETS-related transcription factor Elf-1 1 YADSPGAS(0.042)S(0.958)PEQPK;YADSPGAS(0.057)S(0.943)PEQPK 268.5 1.02E-89 52644000 11700.2 10630.1 21775.5 14451.2 11170.9 8910.2 8519.7 13507 10627 16698.4 TRUE FALSE 11864.0389 11790.73027 16278.00571 13524.36471 12692.5657 10490.29886 10136.2686 12359.49604 11647.77083 13295.25691 0.892351233 0.886837339 1.224346834 1.017232296 0.954668705 0.78902566 0.762397347 0.929616939 0.876084675 1 13.69862404 -7.036698215 4.964863677 0.860369175 1.010263859 0.256525509 0.106934229 0.269778225 16.46323131 0.037097324 0.038526671 9.19E-08 7.036698215 0.149894684 YAHVVLR ddPTM_K562_Paclitaxel_30min_R1 1 YAHVVLR 7 0 P62269 P62269 RPS18 40S ribosomal protein S18 0 102.98 0.017762 9586900 6869.7 7624.8 8852.4 7892.4 7077.6 6880.5 7925.9 8789.5 7736.9 9971.9 FALSE TRUE 6965.896995 8457.301449 6617.502135 7386.216789 8041.688945 8100.660068 9429.798149 8042.777113 8480.063814 7939.621306 0.877358847 1.06520212 0.833478308 0.930298374 1.012855479 1.020282927 1.187688655 1.012992535 1.068069054 1 12.95485448 -7.017789014 2.265925081 1.067559729 0.930175617 0.410808605 0.073815907 0.304199571 3.128305494 0.026083582 0.028178393 9.60E-08 7.017789014 -0.137384112 YCDPDSYHRR ddPTM_K562_Paclitaxel_30min_R1 1 YCDPDSYHRR 10 1 P26368;P26368-2;K7ENG2 P26368 U2AF2 Splicing factor U2AF 65 kDa subunit 0 100.25 0.014655 3028800 2669.4 2189.2 2954.1 2638 2168.6 2361.8 2248.8 2854.2 2872.8 3015.5 FALSE TRUE 2706.779836 2428.224259 2208.300919 2468.810487 2464.000035 2780.632069 2675.49806 2611.717895 3148.745276 2400.939445 1.127383634 1.011364224 0.919765354 1.028268536 1.026264965 1.158143357 1.114354661 1.08778999 1.311463845 1 11.2293833 -7.225248908 6.679439179 1.138606448 1.016090403 0.293131344 0.086354374 0.260557878 36.64763887 0.028282052 0.027902876 5.95E-08 7.225248908 -0.122516046 YDDYDRYR ddPTM_K562_Paclitaxel_30min_R1 1 YDDYDRYR 8 1 O75494-6;O75494-3;Q5JRI1;O75494-5;O75494-4;O75494-2;O75494 O75494-6 SRSF10 Serine/arginine-rich splicing factor 10 0 64.207 0.030954 0 1027.6 1083.1 1415.5 937.96 1099.5 1201.5 1167 1001.1 1275.6 1063.5 FALSE TRUE 1041.98957 1201.356521 1058.139518 877.8034438 1249.270515 1414.569155 1388.432158 916.0503063 1398.12708 846.7581162 1.230563428 1.418771781 1.24963611 1.03666375 1.475357001 1.67057053 1.639703395 1.081832331 1.651152853 1 9.7258061 -5.246488545 21.51850586 1.369525816 1.230562718 0.021970602 0.245163337 1806.853647 2600256.794 0.06131405 1.106711468 5.67E-06 5.246488545 -0.138963098 YDERPGPS(ph)PLPHR ddPTM_K562_Paclitaxel_30min_R1 2 YDERPGPSPLPHR 13 1 P08621;P08621-4 P08621 SNRNP70 U1 small nuclear ribonucleoprotein 70 kDa 1 YDERPGPS(1)PLPHR;Y(0.361)DERPGPS(0.639)PLPHR 111.12 0.012911 313749000 5116.8 4438.5 6190.9 4842 4343.4 3950.2 3795.2 4876.3 3038.9 5339.3 TRUE FALSE 5188.450987 4923.11044 4627.930727 4531.455792 4935.044614 4650.712506 4515.319388 4462.027878 3330.799923 4251.147729 1.220482401 1.158066187 1.088630888 1.065937032 1.16087347 1.093989859 1.062141256 1.049605462 0.78350604 1 12.05363668 -8.579991756 5.127202933 0.89246811 1.116190352 0.644494342 0.067200071 0.122486099 6.625132868 0.04763671 0.017244401 2.63E-09 8.579991756 0.223722242 YDILPLS(ph)PVSR ddPTM_K562_Paclitaxel_30min_R1 2 YDILPLSPVSR 11 0 I3L4W0;I3L0X6;I3L1D9;I3L3K5;I3L4B2;O95476 I3L4W0 CTDNEP1 CTD nuclear envelope phosphatase 1 1 YDILPLS(0.999)PVS(0.001)R;YDILPLS(0.986)PVS(0.014)R 133.88 0.00082398 16454900 7723.5 8272.1 9869.1 8865.1 7091.2 6889.8 7461.9 8081.4 6559 8994.8 TRUE FALSE 7831.652829 9175.275852 7377.523646 8296.532165 8057.141495 8111.609292 8877.756571 7394.834627 7189.021256 7161.654823 1.093553518 1.281167004 1.03014231 1.158465797 1.125039072 1.132644548 1.239623633 1.032559487 1.003821244 1 12.80607727 -8.422979414 6.691005115 1.007076371 1.150153826 0.485004681 0.066242549 0.201587916 11.42137614 0.035381366 0.016682624 3.78E-09 8.422979414 0.143077455 YDNY(ph)ADSLR ddPTM_K562_Paclitaxel_30min_R1 1 YDNYADSLR 9 0 Q86V42-3;Q86V42;Q86V42-2 Q86V42-3 FAM124A Protein FAM124A 1 Y(0.18)DNY(0.819)ADSLR 91.069 0.028289 11085000 0 0 63.605 0 0 0 0 0 0 128.88 TRUE FALSE 0 0 47.54713109 0 0 0 0 0 0 102.6141853 0 0 0.463358267 0 0 0 0 0 0 1 6.681086371 -11.96656624 2.469178989 1.781799104 0.054512732 0.809178911 0.138176621 23712551.01 10711957 106045684.2 0.037727679 1.08E-12 11.96656624 -1.727286372 YDSS(ph)NQVK ddPTM_K562_Paclitaxel_30min_R1 1 YDSSNQVK 8 0 O95983-2;O95983;A0A087WZ12;A0A087WT34;A0A087X1H1;A0A0A0MTS6;K7EIE8 O95983-2 MBD3 Methyl-CpG-binding domain protein 3 1 Y(0.031)DS(0.244)S(0.724)NQVK 120.63 0.00082183 0 2086.9 1603.4 4148.6 2275.8 1660.3 1657.8 1596.9 2518.2 1989 2957.1 TRUE FALSE 2116.123039 1778.464634 3101.234621 2129.840374 1886.460969 1951.787553 1899.903439 2304.263192 2180.052337 2354.441397 0.898779235 0.755365853 1.317184885 0.904605388 0.801235049 0.828981157 0.806944459 0.978687851 0.925931875 1 11.2011691 YEAVS(ph)PERLELER ddPTM_K562_Paclitaxel_30min_R1 2 YEAVSPERLELER 13 1 Q92585 Q92585 MAML1 Mastermind-like protein 1 1 YEAVS(1)PERLELER;YEAVS(1)PERLELER 89.466 0.012017 69397000 3365.6 3286.6 4496.4 3451.2 3492.4 2723.2 2988.5 3442.1 4229.5 4160.5 TRUE FALSE 3412.728784 3645.442103 3361.228209 3229.855479 3968.124007 3206.121284 3555.552274 3149.67212 4635.762373 3312.587816 1.030230434 1.100481649 1.014683503 0.975024862 1.197892472 0.967860012 1.073345816 0.950819207 1.399438333 1 11.69374299 -8.732104394 24.99987776 1.199720491 1.042010089 0.244669784 0.112987776 234.7999488 200102.1896 0.069630137 0.026309372 1.85E-09 8.732104394 -0.157710402 YEDHTIFHDISLR ddPTM_K562_Paclitaxel_30min_R1 2 YEDHTIFHDISLR 13 0 P82675 P82675 MRPS5 "28S ribosomal protein S5, mitochondrial" 0 ; 102.73 0.0058138 16622400 4965 4434.4 5102.9 4415 3947.1 4159.7 4735.9 5437 3696.4 6305.4 FALSE TRUE 5034.525318 4918.562788 3814.609783 4131.841661 4484.761845 4897.36439 5634.512302 4975.092913 4051.455736 5020.356019 1.002822369 0.979723902 0.75982854 0.82301766 0.8933155 0.975501413 1.122333213 0.990984085 0.807005663 1 12.29357396 -7.269484638 5.230311817 0.988220385 0.885012282 0.166115034 0.096656936 0.321786754 29.4946375 0.036285279 0.033631254 5.38E-08 7.269484638 -0.103208103 YEEIDNAPEER ddPTM_K562_Paclitaxel_30min_R1 1 YEEIDNAPEER 11 0 P49411 P49411 TUFM "Elongation factor Tu, mitochondrial" 0 138.76 0.0048543 7522300 1182 859.81 1141.1 1027.1 952.18 921.61 729.2 1207.1 893.05 1353.4 FALSE TRUE 1198.551647 953.6869635 853.0151921 961.2264031 1081.883037 1085.044593 867.5618933 1104.549321 978.8314428 1077.576337 1.112266116 0.885029608 0.791605349 0.892026272 1.003996654 1.006930605 0.805104811 1.025031158 0.908363899 1 10.07357436 -6.729423504 24.98802171 0.954267466 0.908529777 0.02956481 0.096284189 729.5426154 569396.231 0.028891128 0.037294947 1.86E-07 6.729423504 -0.04573769 YEGSYALTSEEAERS(ph)DGDPVQPAVLQVHQTS ddPTM_K562_Paclitaxel_30min_R1 1 YEGSYALTSEEAERSDGDPVQPAVLQVHQTS 31 1 O95810 O95810 SDPR Serum deprivation-response protein 1 Y(0.001)EGS(0.002)Y(0.006)ALT(0.016)S(0.055)EEAERS(0.92)DGDPVQPAVLQVHQTS 70.572 0.00011308 51724000 1327.9 1316.6 1554.7 1490.4 1180.3 1107.4 909.42 1508.2 1415.6 1479 TRUE FALSE 1346.494697 1460.35084 1162.196757 1394.812415 1341.076843 1303.781841 1081.977698 1380.068996 1551.574705 1177.578988 1.143443209 1.240129839 0.98693741 1.184474612 1.138842367 1.107171455 0.91881539 1.171954502 1.317597138 1 10.20160812 -7.280328115 7.252009408 1.102241824 1.138528918 0.02373602 0.114364932 1.048449967 281.0554791 0.041178869 0.037337308 5.24E-08 7.280328115 0.036287094 YEPQS(ph)PGYEPR ddPTM_K562_Paclitaxel_30min_R1 2 YEPQSPGYEPR 11 0 H3BS42;Q9H5H4 H3BS42 ZNF768 Zinc finger protein 768 1 YEPQS(1)PGYEPR;YEPQS(1)PGYEPR 155.14 0.0006566 300730000 3788.2 3761 4787.4 3652.7 3739.2 3116.6 3349.4 4332.8 2584.5 4472.1 TRUE FALSE 3841.246488 4171.638699 3578.76166 3418.432171 4248.542345 3669.285251 3984.931165 3964.701596 2832.752773 3560.683565 1.07879468 1.171583664 1.005077142 0.960049414 1.193181665 1.030500235 1.119147796 1.113466424 0.795564313 1 11.79793852 -8.747215717 24.998417 0.897782132 1.083164786 0.452603767 0.08190197 176.700144 310558.03 0.054328272 0.020318646 1.79E-09 8.747215717 0.185382654 YESQEPLAGQES(ph)PLPLATR ddPTM_K562_Paclitaxel_30min_R1 4 YESQEPLAGQESPLPLATR 19 0 Q9C0C2;Q9C0C2-2 Q9C0C2 TNKS1BP1 182 kDa tankyrase-1-binding protein 1 YESQEPLAGQES(1)PLPLATR;YESQEPLAGQES(0.92)PLPLAT(0.08)R;YESQEPLAGQES(1)PLPLATR;YESQEPLAGQES(1)PLPLATR 320.79 9.38E-265 147187000 8909 8228.1 10964.1 9197.9 7948.6 7931.1 8087.6 9761.7 5905.5 10746.3 TRUE FALSE 9033.753487 9126.471784 8196.077353 8607.987862 9031.333891 9337.569227 9622.17988 8932.382654 6472.749661 8556.198161 1.055813963 1.066650352 0.957911119 1.006052887 1.055531174 1.091322226 1.124585908 1.043966314 0.756498335 1 13.06275418 -8.678029 10.40680731 0.878672118 1.050532613 0.498164629 0.069057478 0.273373206 31.68658679 0.046204271 0.017401543 2.10E-09 8.678029 0.171860495 YEWDVAEAR ddPTM_K562_Paclitaxel_30min_R1 2 YEWDVAEAR 9 0 P13639 P13639 EEF2 Elongation factor 2 0 ; 159.28 2.86E-05 99737000 5199 5537.6 6542.7 6476 5144.9 5147.5 5073.5 6873.8 3624 7584.4 FALSE TRUE 5271.80204 6142.213895 4890.914466 6060.658346 5845.722484 6060.336851 6036.17014 6289.827785 3972.101392 6038.695117 0.873003511 1.017142574 0.809929028 1.003637082 0.968043985 1.003583843 0.999581867 1.041587241 0.657774787 1 12.56002112 -2.019209919 24.10311115 0.943509926 0.004711168 0 0.115612183 0 0 0.025008717 0 0.009567315 2.019209919 -0.938798758 YEYDPDIS(ph)PPR ddPTM_K562_Paclitaxel_30min_R1 1 YEYDPDISPPR 11 0 Q9BRD0;H7C462 Q9BRD0 BUD13 BUD13 homolog 1 YEYDPDIS(1)PPR 179.35 0.001624 31705000 1646.2 1441 2275.6 1735.2 1670.8 1347.8 1672.5 2131.3 866.86 2163.5 TRUE FALSE 1669.251879 1598.333253 1701.096636 1623.912038 1898.391247 1586.813406 1989.848144 1950.232762 950.1257762 1722.577512 0.969043115 0.927873052 0.987529805 0.942722186 1.102064339 0.921185488 1.15515739 1.132159655 0.551572147 1 10.75035319 -8.744707536 24.99898726 0.7757858 1.01499124 0.359653579 0.128832434 216.2469548 323096.755 0.083561429 0.031395016 1.80E-09 8.744707536 0.23920544 YFAES(ph)DEEEDDVDFAMFN ddPTM_K562_Paclitaxel_30min_R1 4 YFAESDEEEDDVDFAMFN 18 0 Q02880-2;Q02880 Q02880-2 TOP2B DNA topoisomerase 2-beta 1 YFAES(1)DEEEDDVDFAMFN;YFAES(1)DEEEDDVDFAMFN;YFAES(1)DEEEDDVDFAMFN;YFAES(1)DEEEDDVDFAMFN 180.3 4.16E-12 103781200 4310.31 4011.9 5338.54 4501.46 3915.86 3868.58 3804.286 4972.08 4580.64 5176.652 TRUE FALSE 4370.667638 4449.932809 3990.759551 4212.756503 4449.266428 4554.618345 4526.129409 4549.670769 5020.630939 4121.647481 1.060417626 1.079649055 0.968243783 1.022105001 1.079487377 1.10504801 1.098135983 1.103847622 1.218112651 1 12.0090054 -6.974790786 3.029479724 1.110705724 1.031614043 0.267322497 0.056000959 0.332820917 6.274876957 0.018732357 0.020673821 1.06E-07 6.974790786 -0.07909168 YFDS(ph)GDYNMAK ddPTM_K562_Paclitaxel_30min_R1 6 YFDSGDYNMAK 11 0 A6NMQ3;Q5T5H1;O43768-6;O43768-5;O43768-2;O43768;O43768-9;O43768-7;O43768-3;O43768-4;H3BQ52;H3BTD3;H3BMD8;P56211-2;P56211 A6NMQ3 ENSA;ARPP19 Alpha-endosulfine;cAMP-regulated phosphoprotein 19 1 YFDS(1)GDYNMAK;Y(0.001)FDS(0.999)GDYNMAK;YFDS(1)GDYNMAK;Y(0.021)FDS(0.978)GDYNMAK;YFDS(0.99)GDY(0.01)NMAK;YFDS(0.999)GDY(0.001)NMAK 171.73 0.0001896 896932000 25082.4 19470.6 31649.4 21668.4 15538.7 14734.5 17613.2 25155.2 25631.6 31787.8 TRUE FALSE 25433.63099 21596.46595 23659.11754 20278.68581 17655.33401 17347.45669 20955.21275 23018.10875 28093.62971 25309.42891 1.004907344 0.853297245 0.934794602 0.801230477 0.697579312 0.685414782 0.827960711 0.909467726 1.110006465 1 14.62738733 -8.56410881 3.747832798 1.052732394 0.824151924 0.472590072 0.093984729 0.213192503 6.237418379 0.077648756 0.027198702 2.73E-09 8.56410881 -0.22858047 YFEADPPGQVAAS(ph)PDPTT ddPTM_K562_Paclitaxel_30min_R1 1 YFEADPPGQVAASPDPTT 18 0 H0Y8X4;O43598 H0Y8X4 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 1 YFEADPPGQVAAS(0.568)PDPT(0.216)T(0.216) 114.56 0.00031405 22123000 3295.8 3565.1 3500.7 3980.5 3388.1 3426.7 3244.7 3838.9 2475.3 4477.4 TRUE FALSE 3341.951368 3954.349674 2616.904989 3725.208546 3849.616581 4034.377132 3860.364887 3512.761483 2713.063625 3564.903422 0.93745916 1.109244545 0.734074582 1.044967592 1.079865602 1.131693248 1.082880636 0.985373534 0.761048282 1 11.79964728 -8.544285721 23.60777064 0.87808608 1.018880576 0.166075608 0.120703277 223.3719351 246326.9342 0.082231599 0.031088739 2.86E-09 8.544285721 0.140794496 YFEADPPGQVAASPDPT(ph)T ddPTM_K562_Paclitaxel_30min_R1 1 YFEADPPGQVAASPDPTT 18 0 H0Y8X4;O43598 H0Y8X4 DNPH1 2-deoxynucleoside 5-phosphate N-hydrolase 1 1 YFEADPPGQVAAS(0.034)PDPT(0.483)T(0.483) 131.18 2.72E-08 23692000 3398.3 3787.1 3899.9 3873.4 3613.5 2702.2 3224.5 4032.9 2325.6 3921 TRUE FALSE 3445.886685 4200.588385 2915.322012 3624.977461 4105.719877 3181.397229 3836.332042 3690.279972 2548.984271 3121.898048 1.103779378 1.345523884 0.933829986 1.161145369 1.315135797 1.019058656 1.228846036 1.182062936 0.81648543 1 11.60820771 -8.751307053 24.99958712 0.90824271 1.162389557 0.398112541 0.124391267 171.1786706 422357.8996 0.082453733 0.03037378 1.77E-09 8.751307053 0.254146847 YFGTDAVPDGS(ph)DEEEVAYTG ddPTM_K562_Paclitaxel_30min_R1 2 YFGTDAVPDGSDEEEVAYTG 20 0 Q9NWZ5;Q9NWZ5-4 Q9NWZ5 UCKL1 Uridine-cytidine kinase-like 1 1 YFGTDAVPDGS(1)DEEEVAYTG;YFGT(0.001)DAVPDGS(0.98)DEEEVAY(0.001)T(0.018)G 77.324 0.0057819 21000000 9039.5 9521.5 11469.8 10020.5 8641.8 8671.1 8933.9 11264 6436.1 12554.6 TRUE FALSE 9166.080889 10561.08957 8574.107133 9377.82998 9818.959467 10208.79784 10629.06089 10307.05289 7054.316162 9995.965629 0.916978032 1.056535203 0.857756764 0.938161487 0.98229224 1.021291811 1.063335078 1.031121282 0.705716328 1 13.28713023 -8.726601774 24.99994122 0.852856841 0.984059626 0.251912899 0.090001112 206.803823 148405.7091 0.058988787 0.022293495 1.88E-09 8.726601774 0.131202784 YFPSSLS(ph)PVTPSESLPRPR ddPTM_K562_Paclitaxel_30min_R1 2 YFPSSLSPVTPSESLPRPR 19 1 K7EKZ6;K7EQ21;Q9P0U4;Q9P0U4-2 K7EKZ6 CXXC1 CXXC-type zinc finger protein 1 1 YFPSS(0.002)LS(0.998)PVTPSESLPRPR;YFPS(0.004)S(0.134)LS(0.862)PVTPSESLPRPR 133.16 2.18E-09 66941000 1197.7 1172.21 1445.34 1353.8 983.9 1157.46 1247.56 1481.06 1017.51 1945.67 TRUE FALSE 1214.471495 1300.195852 1080.446041 1266.973327 1117.923838 1362.719279 1484.277997 1355.234709 1115.246382 1549.141386 0.78396427 0.83930096 0.69744831 0.817855193 0.721640935 0.879661012 0.958129458 0.87482958 0.719912586 1 10.59725311 -7.283863152 22.01679149 0.883159891 0.774179656 0.349212567 0.078035543 217.108143 213165.785 0.027157155 0.023982011 5.20E-08 7.283863152 -0.108980235 YFQINQDEEEEEDED ddPTM_K562_Paclitaxel_30min_R1 7 YFQINQDEEEEEDED 15 0 K7ERI7;P35268 K7ERI7 RPL22 60S ribosomal protein L22 0 ;;;;;; 203.02 1.75E-66 313938300 28357.2 27968.8 33410.6 30003.2 25509.7 26210 25968.8 30607.5 27362.6 32734.1 FALSE TRUE 28754.28829 31022.52817 24975.68081 28078.92904 28984.55302 30857.97549 30896.24423 28007.20183 29990.89999 26062.87245 1.103266278 1.190295821 0.958285809 1.077353584 1.11210125 1.18398214 1.185450464 1.0746015 1.150713531 1 14.66970848 YGGSHYSSSGYS(ph)NSR ddPTM_K562_Paclitaxel_30min_R1 3 YGGSHYSSSGYSNSR 15 0 Q9BRL6-2;Q9BRL6 Q9BRL6-2 SRSF8 Serine/arginine-rich splicing factor 8 1 YGGSHYSS(0.011)S(0.091)GYS(0.758)NS(0.139)R;YGGS(0.001)HYS(0.141)S(0.022)S(0.141)GYS(0.692)NS(0.003)R;YGGSHYSS(0.007)S(0.02)GYS(0.842)NS(0.131)R 125.61 0.00022351 38760100 2392.26 2203.42 2683.17 2283.39 1936.42 2229.85 2032.73 2049.51 2508.33 2592.62 TRUE FALSE 2425.759021 2443.996847 2005.770548 2136.943585 2200.193188 2625.282589 2418.429906 1875.391333 2749.266304 2064.242621 1.175132708 1.183967825 0.971673837 1.035219196 1.065859781 1.271789741 1.171582197 0.908513037 1.33185231 1 11.01139683 YGGSVGSQPPPVAPEPGPVPSS(ph)PSQEPPTKR ddPTM_K562_Paclitaxel_30min_R1 4 YGGSVGSQPPPVAPEPGPVPSSPSQEPPTKR 31 1 E9PS08;A0A087WTZ5;E9PJ81;E9PRQ7;Q04323;Q04323-2 E9PS08 UBXN1 UBX domain-containing protein 1 1 YGGSVGSQPPPVAPEPGPVPS(0.335)S(0.507)PS(0.157)QEPPT(0.002)KR;YGGSVGSQPPPVAPEPGPVPS(0.421)S(0.524)PS(0.044)QEPPT(0.012)KR;YGGSVGSQPPPVAPEPGPVPS(0.408)S(0.566)PS(0.027)QEPPTKR;YGGSVGSQPPPVAPEPGPVPS(0.387)S(0.571)PS(0.04)QEPPT(0.002)KR 128.48 3.69E-21 166533000 8856 6342.7 14175 9475 7314.7 7302.2 6485.4 8824.5 9078 11318.2 TRUE FALSE 8980.011323 7035.217436 10596.34594 8867.315909 8311.085979 8597.142642 7715.970794 8074.803644 9949.982462 9011.544627 0.996500788 0.780689407 1.175863448 0.983995117 0.922270967 0.954014322 0.856231769 0.896051008 1.10413729 1 13.1375587 -8.760637362 24.99998327 1.052068647 0.94566385 0.152293891 0.10037973 39.77827493 1240293.748 0.077923009 0.025456044 1.74E-09 8.760637362 -0.106404797 YGLLANTEDPTEMASLDS(ph)DEETVFESR ddPTM_K562_Paclitaxel_30min_R1 2 YGLLANTEDPTEMASLDSDEETVFESR 27 0 Q9BVV8 Q9BVV8 C19orf24 Uncharacterized membrane protein C19orf24 1 YGLLANTEDPTEMASLDS(0.953)DEET(0.047)VFESR;YGLLANTEDPTEMAS(0.008)LDS(0.985)DEET(0.007)VFESR 139.97 4.70E-24 42009000 3745.2 3813.6 4873.1 4041 3984.1 3510.2 3217.3 4224.1 3745.4 4206 TRUE FALSE 3797.644355 4229.981745 3642.825635 3781.828347 4526.801871 4132.684684 3827.76588 3865.236339 4105.162405 3348.814891 1.134026358 1.263127967 1.08779546 1.129303491 1.351762345 1.23407379 1.14302104 1.15421021 1.225855277 1 11.70943492 -11.01888016 5.103897009 0.999998112 1.192141827 0.372890243 0.074483902 56599576.37 9.954480387 1256.055029 0.018563992 9.57E-12 11.01888016 0.192143715 YGLQDS(ph)DEEEEEHPSK ddPTM_K562_Paclitaxel_30min_R1 2 YGLQDSDEEEEEHPSK 16 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 YGLQDS(0.999)DEEEEEHPS(0.001)K;YGLQDS(1)DEEEEEHPSK 237.73 1.43E-50 66899000 5243.8 4144.5 10092.1 6046.5 5029.8 4402.9 4001 6311 4093.2 7462.7 TRUE FALSE 5317.229379 4597.010526 7544.224537 5658.704553 5714.943915 5183.692495 4760.168863 5774.841158 4486.370149 5941.797644 0.894885639 0.773673356 1.269687221 0.952355649 0.961820691 0.872411483 0.80113278 0.971901351 0.755052666 1 12.53668376 -7.209688098 4.079025473 0.87301957 0.976964433 0.100992348 0.133933996 0.531284304 18.6646185 0.046782907 0.045670187 6.17E-08 7.209688098 0.103944864 YGLQDSDEEEEEHPS(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 YGLQDSDEEEEEHPSK 16 0 P52948-6;P52948-2;P52948-5;P52948;A0A3B3ITD8;P52948-4;P52948-3 P52948-6 NUP98 Nuclear pore complex protein Nup98-Nup96;Nuclear pore complex protein Nup98;Nuclear pore complex protein Nup96 1 YGLQDS(0.08)DEEEEEHPS(0.92)K 158.08 2.69E-07 18374000 1650.7 1822 3053.4 1972.8 1412.8 1518 1406.2 2000.6 1355.6 2833.2 TRUE FALSE 1673.814893 2020.932122 2282.531406 1846.273438 1605.247279 1787.195986 1673.019109 1830.636543 1485.811437 2255.792285 0.742007544 0.895885732 1.011853539 0.818458974 0.711611299 0.792269749 0.74165477 0.811527087 0.658665005 1 11.13941851 -6.514744447 24.82534695 0.773759338 0.889619895 0.142455137 0.103857303 540.5225241 1649641.505 0.028794252 0.03900563 3.06E-07 6.514744447 0.115860557 YGMGTS(ph)VER ddPTM_K562_Paclitaxel_30min_R1 2 YGMGTSVER 9 0 P08559-4;P08559-3;P08559;P08559-2 P08559-4 PDHA1 "Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial" 1 YGMGT(0.005)S(0.995)VER;YGMGT(0.003)S(0.997)VER 101.46 0.01042 36945000 4754.3 4207.2 5554.8 5216.6 4077 4757.6 4069.3 5126.6 3132.7 5958.4 TRUE FALSE 4820.874868 4666.556324 4152.422039 4882.030625 4632.356424 5601.29356 4841.428432 4691.063331 3433.609832 4744.074809 1.016188627 0.983659936 0.875285953 1.029079604 0.976450965 1.180692503 1.020521098 0.98882575 0.723768062 1 12.21191104 -8.554377432 24.43230182 0.860021243 1.010719725 0.285086961 0.093681201 194.2768362 150688.7167 0.062877117 0.023765877 2.79E-09 8.554377432 0.150698481 YGPADVEDTTGS(ph)GATDSKDDDDIDLFGSDDEEESEEAKR ddPTM_K562_Paclitaxel_30min_R1 1 YGPADVEDTTGSGATDSKDDDDIDLFGSDDEEESEEAKR 39 2 C9JZW3;P24534 C9JZW3 EEF1B2 Elongation factor 1-beta 1 YGPADVEDT(0.157)T(0.157)GS(0.367)GAT(0.128)DS(0.116)KDDDDIDLFGS(0.075)DDEEES(0.001)EEAKR 47.616 0.0016288 29517000 309.52 193.87 831.28 386.71 244.53 149.16 163.55 348.84 286.79 501.09 TRUE FALSE 313.854235 215.0373822 621.4130829 361.9081515 277.8391259 175.6114317 194.5827587 319.2038646 314.3374609 398.9675829 0.786666006 0.538984598 1.557552817 0.907111673 0.696395241 0.440164663 0.487715712 0.800074688 0.787877197 1 8.640127719 -6.740118488 5.001882567 0.666734067 0.965898704 0.148766053 0.281596578 0.327139662 21.21642275 0.089029192 0.111119022 1.82E-07 6.740118488 0.299164636 YGVIILDEAHER ddPTM_K562_Paclitaxel_30min_R1 3 YGVIILDEAHER 12 0 O43143 O43143 DHX15 Pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 0 ;; 160.67 0.0028765 19282100 7041.8 6998.8 8593.1 7709 6511.4 6634.2 7089.6 7978.5 6970.2 9531.2 FALSE TRUE 7140.406926 7762.952652 6423.665627 7214.579244 7398.362919 7810.682221 8434.81459 7300.676625 7639.718854 7588.736208 0.940921746 1.022957241 0.846473701 0.950695748 0.974913703 1.029246769 1.111491342 0.962041165 1.0067182 1 12.88964393 -7.029776628 2.954522235 1.024657221 0.940035559 0.345010705 0.05308956 0.313861049 5.522391842 0.018789213 0.020024086 9.34E-08 7.029776628 -0.084621662 YHEEFEK ddPTM_K562_Paclitaxel_30min_R1 1 YHEEFEK 7 0 Q14847;Q14847-2;C9J9W2;Q14847-3 Q14847 LASP1 LIM and SH3 domain protein 1 0 104.37 0.015948 28237000 1893 1724.8 3094.5 2233.8 1613.9 1496.7 1366.4 2369.4 1448.8 2537.5 FALSE TRUE 1919.50784 1913.119497 2313.255203 2090.534066 1833.740504 1762.11873 1625.667267 2168.104681 1587.963713 2020.356107 0.950083915 0.946921926 1.144973995 1.03473544 0.907632321 0.872182248 0.804643924 1.073129966 0.785982089 1 10.98039389 -6.76616497 23.81410405 0.904033353 1.023002996 0.252221502 0.094215267 89.06097613 448813.2096 0.028594324 0.033520874 1.71E-07 6.76616497 0.118969643 YHGHS(ph)MSDPGVSYR ddPTM_K562_Paclitaxel_30min_R1 3 YHGHSMSDPGVSYR 14 0 P08559-4;P08559-3;P08559;P08559-2;Q5JPU3;P29803 P08559-4 PDHA1;PDHA2 "Pyruvate dehydrogenase E1 component subunit alpha, somatic form, mitochondrial;Pyruvate dehydrogenase E1 component subunit alpha, testis-specific form, mitochondrial" 1 Y(0.079)HGHS(0.888)MS(0.033)DPGVSYR;YHGHS(0.972)MS(0.028)DPGVSYR;YHGHS(0.996)MS(0.004)DPGVSYR 170.35 1.06E-05 512792000 6417.8 5755.4 7137.5 6380.8 4985.2 7152.8 5356.8 5958 4112.9 7506.8 TRUE FALSE 6507.669001 6383.794036 5335.54985 5971.564047 5664.26864 8421.24865 6373.224836 5451.830711 4507.962422 5976.910039 1.088801564 1.068075978 0.892693685 0.999105559 0.947691801 1.408963594 1.066307639 0.912148698 0.754229592 1 12.54518411 -8.327436041 4.563625678 0.86741949 1.066650584 0.253221693 0.140578853 0.318971233 13.17124404 0.085162508 0.039442313 4.71E-09 8.327436041 0.199231094 YHTINGHNAEVR ddPTM_K562_Paclitaxel_30min_R1 3 YHTINGHNAEVR 12 0 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ;; 190.36 0.00025178 31828100 3152.41 2536.92 3944 2882.25 2894.5 2449.65 2388.49 3003.06 2988.8 3417.5 FALSE TRUE 3196.553466 2813.909505 2948.288421 2697.395385 3288.779904 2884.061033 2841.693509 2747.931308 3275.887594 2721.011624 1.17476656 1.034140935 1.083526581 0.991320787 1.208660733 1.059922349 1.044351845 1.009893263 1.203922675 1 11.4099274 -12.10444756 2.276211715 0.854414258 1.084215696 0.1095109 0.075403136 10016139.94 2474555.943 7557974.052 0.018481466 7.86E-13 12.10444756 0.229801438 YHTINGHNAEVRK ddPTM_K562_Paclitaxel_30min_R1 2 YHTINGHNAEVRK 13 1 P22626;P22626-2;A0A087WUI2 P22626 HNRNPA2B1 Heterogeneous nuclear ribonucleoproteins A2/B1 0 ; 62.799 0.02099 12941100 3739.3 3935.4 5944.1 4074.3 2918.6 3190.6 3114.9 4427.1 5004.8 5543.2 FALSE TRUE 3791.661737 4365.080281 4443.438439 3812.992634 3316.162732 3756.408112 3705.936014 4050.990222 5485.533402 4413.492797 0.859106814 0.989030793 1.006785021 0.863939924 0.751369241 0.851119121 0.839683259 0.917864922 1.242900726 1 12.10770513 -8.640922798 6.876237549 1.118555287 0.882405695 0.539011383 0.087994346 0.167818495 9.234982141 0.064068278 0.023641304 2.29E-09 8.640922798 -0.236149592 YHTSQS(ph)GDEMTSLSEYVSR ddPTM_K562_Paclitaxel_30min_R1 2 YHTSQSGDEMTSLSEYVSR 19 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 1 YHTSQS(1)GDEMTSLSEYVSR;YHTS(0.008)QS(0.992)GDEMTSLSEYVSR 216.16 3.04E-29 24304000 1059.04 960.75 1705.85 1527.62 1171.07 1102.67 858.42 1189.71 720.93 822.31 TRUE FALSE 1073.869827 1065.647934 1275.18707 1429.645291 1330.58956 1298.213042 1021.300714 1088.63671 790.1785477 654.7227706 1.640190132 1.627632308 1.947674844 2.183588772 2.032294614 1.982843885 1.559897959 1.662744536 1.20689028 1 9.354740345 -8.671544093 1.149154126 0.99676996 1.899374145 0.739233276 0.180266245 0.256174355 0.662035466 0.188517351 0.063259837 2.13E-09 8.671544093 0.902604185 YHTSQSGDEMTSLSEYVSR ddPTM_K562_Paclitaxel_30min_R1 6 YHTSQSGDEMTSLSEYVSR 19 0 P08238 P08238 HSP90AB1 Heat shock protein HSP 90-beta 0 ;;;;; 203.89 1.40E-22 527216000 9302.9 9210.1 11596 10473.1 8499.7 8600.4 9020.9 10814.1 9287.4 11695.8 FALSE TRUE 9433.169302 10215.68986 8668.446382 9801.402242 9657.503041 10125.56018 10732.56868 9895.374706 10179.49627 9312.18954 1.012991548 1.097023404 0.930870913 1.052534659 1.037081881 1.087344726 1.15252902 1.062625998 1.093136713 1 13.18490471 -7.120721965 2.784353684 1.087608549 1.023035342 0.198299055 0.052442351 0.406320123 6.099927151 0.018232696 0.018454154 7.57E-08 7.120721965 -0.064573206 YHTVNGHNCEVR ddPTM_K562_Paclitaxel_30min_R1 4 YHTVNGHNCEVR 12 0 F8W6I7;P09651-3;P09651-2;P09651;F8VTQ5;H0YH80;A0A2R8Y4L2;F8VZ49 F8W6I7 HNRNPA1 "Heterogeneous nuclear ribonucleoprotein A1;Heterogeneous nuclear ribonucleoprotein A1, N-terminally processed" 0 ;;; 156.01 0.00047124 25161400 1933.72 1867.91 2002.96 2264.84 1895.17 2090.75 1489.26 2239.56 1758.33 2640.85 FALSE TRUE 1960.798046 2071.854731 1497.287976 2119.583299 2153.324239 2461.515157 1771.839311 2049.295399 1927.225453 2102.64332 0.932539545 0.985357198 0.712097939 1.008056516 1.024103431 1.170676516 0.842672313 0.974628164 0.916572694 1 11.03798843 -4.840320862 9.854185568 0.957433861 0.000421575 0.004685793 0.114191383 771958.5971 743226.1023 0.030060093 16072242.71 1.44E-05 4.840320862 -0.957012287 YIASVQGST(ph)PS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 1 YIASVQGSTPSPR 13 0 P49792;F8WBP7 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 2 YIAS(0.004)VQGS(0.091)T(0.908)PS(0.996)PR 101.2 0.016106 9702700 1121.4 1775.4 1177.5 1505 1089.4 993.82 1097.3 1160.4 1052.2 1344.6 TRUE FALSE 1137.10306 1969.244176 880.2255619 1408.476036 1237.794724 1170.060023 1305.506947 1061.816777 1153.268511 1070.569782 1.06214754 1.839435606 0.822202884 1.315632161 1.156201814 1.092932047 1.219450585 0.991823975 1.077247397 1 10.06416312 -6.109028189 0.343608279 1.009475839 1.488132361 0.123814779 0.243779165 7.089703612 1.0359881 0.246204992 1.347450309 7.78E-07 6.109028189 0.478656522 YIASVQGSTPS(ph)PR ddPTM_K562_Paclitaxel_30min_R1 4 YIASVQGSTPSPR 13 0 P49792;F8WBP7 P49792 RANBP2 E3 SUMO-protein ligase RanBP2 1 YIASVQGSTPS(1)PR;YIASVQGST(0.001)PS(0.999)PR;YIASVQGS(0.004)T(0.03)PS(0.967)PR;YIASVQGST(0.004)PS(0.995)PR 176.89 3.25E-07 158007000 4303.89 4220.86 5673.03 4713.74 4228.3 3705.01 4519.17 5402.81 4509.45 5509.27 TRUE FALSE 4364.157739 4681.707769 4240.803413 4411.421814 4804.266046 4362.041503 5376.658916 4943.807567 4942.602821 4386.47775 0.994911632 1.067304575 0.966790134 1.005686582 1.095244595 0.994429187 1.225734911 1.127056342 1.126781692 1 12.09884724 -7.736245913 24.99905771 1.130481339 1.023096618 0.375964133 0.061946342 214.5261993 212870.6952 0.022677237 0.017559125 1.84E-08 7.736245913 -0.107384721 YIDQEELNK ddPTM_K562_Paclitaxel_30min_R1 1 YIDQEELNK 9 0 P08238;Q14568;Q58FF8;P07900;P07900-2 P08238;P07900 HSP90AB1;HSP90AA2P;HSP90AB2P;HSP90AA1 Heat shock protein HSP 90-beta;Heat shock protein HSP 90-alpha A2;Putative heat shock protein HSP 90-beta 2;Heat shock protein HSP 90-alpha 0 125.57 0.010433 27466000 2180.5 1752.4 3782.6 2746.5 2002.8 1846.6 1690.9 2484.8 2070.7 3110.6 FALSE TRUE 2211.033727 1943.732958 2827.635847 2570.351783 2275.615268 2174.068582 2011.739448 2273.70073 2269.599987 2476.658013 0.892748904 0.784820895 1.141714291 1.037830726 0.918824988 0.877823491 0.81227987 0.918051955 0.916396198 1 11.27417895 -6.98821362 24.29806338 0.894479701 0.965908472 0.07355445 0.096659344 408.9154586 842986.7123 0.032001844 0.036255699 1.03E-07 6.98821362 0.07142877 YIEIDS(ph)DEEPR ddPTM_K562_Paclitaxel_30min_R1 2 YIEIDSDEEPR 11 0 E7EW05;Q9NVU7-2;Q9NVU7 E7EW05 SDAD1 Protein SDA1 homolog 1 YIEIDS(1)DEEPR;YIEIDS(1)DEEPR 184.98 0.0020136 29411000 1732.85 1881.89 1959.37 2218.7 1875.42 1470.65 1788.82 2656.1 1445.77 2447.8 TRUE FALSE 1757.115246 2087.361114 1464.70281 2076.402513 2130.883955 1731.449129 2128.239257 2430.447726 1584.642668 1948.937016 0.901576209 1.071025434 0.751539325 1.065402573 1.093357013 0.888406918 1.092000018 1.247063248 0.813080492 1 10.92847175 YIEIDS(ph)DEEPRGELLSLR ddPTM_K562_Paclitaxel_30min_R1 5 YIEIDSDEEPRGELLSLR 18 1 E7EW05;Q9NVU7-2;Q9NVU7 E7EW05 SDAD1 Protein SDA1 homolog 1 YIEIDS(1)DEEPRGELLSLR;Y(0.001)IEIDS(0.999)DEEPRGELLSLR;YIEIDS(1)DEEPRGELLSLR;YIEIDS(1)DEEPRGELLSLR;YIEIDS(1)DEEPRGELLSLR 124.25 1.73E-05 618113500 3865.01 3928.98 4541.01 4133.18 3607.94 4145.87 4088.55 4305.09 3362.26 5363.97 TRUE FALSE 3919.132065 4357.959323 3394.575863 3868.096334 4099.402511 4881.081834 4864.331019 3939.345733 3685.220096 4270.78997 0.917659752 1.020410592 0.794835589 0.905709801 0.959869846 1.142899058 1.138976876 0.922392757 0.862889564 1 12.06028724 -7.005555946 18.69168109 1.020311827 0.912291367 0.209585029 0.094577624 15.63359446 52604.21763 0.032590295 0.035561983 9.87E-08 7.005555946 -0.10802046 YIRLHPT(ph)HY(ph)SIRS(ph)T(ph)LR ddPTM_K562_Paclitaxel_30min_R1 1 YIRLHPTHYSIRSTLR 16 2 A0A2R8Y707;P00451-2;P00451 A0A2R8Y707 F8 "Coagulation factor VIII;Factor VIIIa heavy chain, 200 kDa isoform;Factor VIIIa heavy chain, 92 kDa isoform;Factor VIII B chain;Factor VIIIa light chain" 4 Y(0.112)IRLHPT(1)HY(0.714)S(0.362)IRS(0.906)T(0.906)LR 78.166 0.0088409 27545000 1053.9 1005.3 1191.5 969.14 796.81 968.19 991.64 1171.4 1020.6 1370.7 TRUE FALSE 1068.657852 1115.062054 890.6910887 906.9836981 905.3490121 1139.884902 1179.798513 1071.882258 1118.63319 1091.350588 0.97920674 1.021726718 0.816136537 0.831065387 0.829567531 1.044471791 1.081044466 0.982161251 1.024998935 1 10.09189891 -7.274922031 24.83755973 1.028827199 0.894557632 0.49498217 0.066134008 694.7742009 1279899.394 0.025978873 0.023037555 5.31E-08 7.274922031 -0.134269567 YIS(ph)PDQLADLYK ddPTM_K562_Paclitaxel_30min_R1 1 YISPDQLADLYK 12 0 P06733;A0A2R8Y6G6;P06733-2 P06733 ENO1 Alpha-enolase 1 YIS(1)PDQLADLYK 83.617 0.027035 3113400 1242.9 1303.7 1691 1185.4 1009.4 1051.1 1064.9 1895.4 1053.8 1844.8 TRUE FALSE 1260.304435 1446.042375 1264.086136 1109.37375 1146.897369 1237.497827 1266.959216 1734.373939 1155.022199 1468.828747 0.858033611 0.984486706 0.860608249 0.755277803 0.78082443 0.842506541 0.862564283 1.180787033 0.786355932 1 10.52045048 -8.037311223 24.98429306 0.994478065 0.847144948 0.272339993 0.104918266 724.0123905 484809.3176 0.048390542 0.027948227 9.18E-09 8.037311223 -0.147333117 YKDANIMSPGS(ph)SLPSLHVR ddPTM_K562_Paclitaxel_30min_R1 1 YKDANIMSPGSSLPSLHVR 19 1 P25054-2;P25054-3;P25054;A0A2Q2SV78;E9PFT7 P25054-2 APC Adenomatous polyposis coli protein 1 YKDANIMS(0.306)PGS(0.575)S(0.114)LPS(0.005)LHVR 69.522 0.011532 9201100 2259.3 2026.8 3933.4 2732.4 2073.6 1982.3 1920.5 2838.7 2438.1 3039.1 TRUE FALSE 2290.937171 2248.092878 2940.364522 2557.156094 2356.059426 2333.833072 2284.904849 2597.534716 2672.290399 2419.729752 0.946773981 0.929067751 1.215162363 1.056794087 0.97368701 0.96450154 0.944281008 1.073481332 1.10437556 1 11.24063021 YLAEVACGDDR ddPTM_K562_Paclitaxel_30min_R1 2 YLAEVACGDDR 11 0 E9PG15;P27348 E9PG15 YWHAQ 14-3-3 protein theta 0 ; 148.32 0.0023213 46058000 2401.1 2044.54 2512.6 2263.26 2335.2 1862.92 2196.6 2587.2 1654.76 2874.1 FALSE TRUE 2434.722808 2267.769791 1878.263055 2118.104634 2653.293775 2193.282705 2613.393383 2367.401211 1813.707092 2288.356842 1.063961163 0.991003566 0.820791154 0.925600673 1.159475536 0.958453098 1.142039272 1.034541977 0.792580536 1 11.16009633 -5.270339833 6.594142563 0.984705657 1.065212911 0.046381117 0.112249765 0.434412193 117.0382996 0.028856402 0.153397026 5.37E-06 5.270339833 0.080507254 YLCIPAADS(ph)PSQNLTR ddPTM_K562_Paclitaxel_30min_R1 1 YLCIPAADSPSQNLTR 16 0 S4R3A4;Q9NRW4;Q9NRW4-2 S4R3A4 DUSP22 Dual specificity protein phosphatase 22 1 YLCIPAADS(0.836)PS(0.164)QNLTR 151.48 2.05E-07 41107000 1751.7 1718.8 1865 1441.7 1558.5 1420.5 1465.2 1571.2 1930.4 2029.3 TRUE FALSE 1776.229204 1906.464397 1394.157684 1349.235815 1770.794086 1672.40573 1743.214051 1437.716753 2115.823545 1615.727546 1.099337081 1.179941755 0.862866816 0.835063943 1.095973198 1.035079048 1.078903467 0.889826231 1.30951753 1 10.65796823 YLDEDTIYHLQPSGR ddPTM_K562_Paclitaxel_30min_R1 2 YLDEDTIYHLQPSGR 15 0 P31153-2;P31153 P31153-2 MAT2A S-adenosylmethionine synthase isoform type-2 0 ; 219.84 6.95E-20 64688000 6754.2 6367.7 7819.8 7209.1 6346.6 6493.9 6402.5 7805.9 6631.7 8205.8 FALSE TRUE 6848.779638 7062.94702 5845.594776 6746.740593 7211.114369 7645.501986 7617.340952 7142.740072 7268.704416 6533.453456 1.048263324 1.081043443 0.894717444 1.03264539 1.103721702 1.17020838 1.165898097 1.093256441 1.112536343 1 12.67363006 -6.740294288 4.128486462 1.119315222 1.008210634 0.341548807 0.063031849 0.218573016 8.329628296 0.01960226 0.024477711 1.82E-07 6.740294288 -0.111104588 YLDIHER ddPTM_K562_Paclitaxel_30min_R1 1 YLDIHER 7 0 P62072 P62072 TIMM10 Mitochondrial import inner membrane translocase subunit Tim10 0 116.9 0.0062123 2675700 3185.9 2624.2 3461.2 3327.1 2940.3 2750.4 2743.3 2846 2666.3 3673.4 FALSE TRUE 3230.512429 2910.71903 2587.377252 3113.714698 3340.81864 3238.144822 3263.826854 2604.214536 2922.410028 2924.759064 1.104539676 0.995199593 0.884646289 1.064605538 1.142254308 1.107149256 1.115930161 0.8904031 0.999196845 1 11.51410207 -8.258726925 24.99320736 0.958599981 1.05526267 0.251137179 0.075621579 373.3845051 3440494.382 0.041520029 0.022551399 5.51E-09 8.258726925 0.096662689 YLEES(ph)DEDDLF ddPTM_K562_Paclitaxel_30min_R1 7 YLEESDEDDLF 11 0 P11388;P11388-2;P11388-3;P11388-4;J3QR57 P11388 TOP2A DNA topoisomerase 2-alpha 1 YLEES(1)DEDDLF;YLEES(1)DEDDLF;YLEES(1)DEDDLF;YLEES(1)DEDDLF;YLEES(1)DEDDLF;YLEES(1)DEDDLF;YLEES(1)DEDDLF 199.11 1.90E-05 1027434800 28419.19 27562.2 36594 30845.8 26308.64 25580.29 24517.2 29699.87 28202.25 32062 TRUE FALSE 28817.14634 30571.53421 27355.39211 28867.48845 29892.32218 30116.59527 29169.21071 27176.68066 30911.20212 25527.7468 1.128855851 1.197580595 1.071594462 1.130827906 1.17097378 1.179759244 1.14264729 1.064593788 1.210886427 1 14.63977858 -11.68031404 3.038549436 0.984760432 1.142680444 0.467107913 0.046177677 12070872.56 14229190.08 1429946.753 0.011246142 2.09E-12 11.68031404 0.157920013 YLGGS(ph)MDLSTFDFR ddPTM_K562_Paclitaxel_30min_R1 2 YLGGSMDLSTFDFR 14 0 O95983-2;O95983 O95983-2 MBD3 Methyl-CpG-binding domain protein 3 1 YLGGS(1)MDLSTFDFR;YLGGS(1)MDLSTFDFR 230.69 7.03E-35 15781100 973.09 1087.71 1247.35 1122.24 838.37 897.97 1050.43 925.08 1094.91 1206.53 TRUE FALSE 986.7162622 1206.469856 932.4410655 1050.264549 952.5701877 1057.212371 1249.743609 846.4886798 1200.080998 960.6385237 1.027146255 1.255904095 0.970647171 1.093298388 0.99160107 1.100530892 1.300950959 0.881172948 1.249253458 1 9.907849855 -7.507480213 24.79544599 1.112627614 1.071388628 0.020456054 0.131676431 3355.811853 5403701.757 0.045380104 0.038691086 3.11E-08 7.507480213 -0.041238986 YLGPSNS(ph)QVDFLLR ddPTM_K562_Paclitaxel_30min_R1 1 YLGPSNSQVDFLLR 14 0 H7BYZ6 H7BYZ6 GPR75-ASB3 1 YLGPS(0.023)NS(0.977)QVDFLLR 86.288 0.020747 34445000 1003.9 1022.1 1521.3 1142.5 928.86 994.08 877.3 1279 579.32 1482.6 TRUE FALSE 1017.957697 1133.696335 1137.229 1069.225164 1055.386458 1170.36613 1043.763095 1170.340967 634.9662745 1180.445306 0.862350582 0.960397173 0.963389827 0.905781198 0.894057905 0.991461548 0.884211314 0.991440231 0.537904019 1 10.20511548 YLHDESGLNRR ddPTM_K562_Paclitaxel_30min_R1 3 YLHDESGLNRR 11 1 B5MCX3;Q15019;Q15019-3;Q15019-2;C9IY94;C9J938;H7C310;C9JB25;C9J2Q4 B5MCX3 2-Sep Septin-2 0 ;; 112.3 0.0022619 27054200 3162.6 3179.46 3932 4000.3 3086.53 3267.05 3356.47 3593 3303.97 4437.7 FALSE TRUE 3206.886157 3526.604195 2939.31797 3743.738663 3506.967641 3846.415446 3993.342661 3287.752223 3621.331081 3533.294304 0.907619315 0.998106552 0.831891633 1.059560382 0.992548975 1.08862017 1.130203803 0.930506191 1.024916344 1 11.78679821 -6.283724618 24.92125992 1.034206119 0.921095892 0.423856912 0.06374504 745.8633864 834086.4733 0.018131632 0.026916639 5.20E-07 6.283724618 -0.113110227 YLLGDAPVS(ph)PSSQK ddPTM_K562_Paclitaxel_30min_R1 3 YLLGDAPVSPSSQK 14 0 Q9NYB0;A0A590UJT3;H3BMI8 Q9NYB0 TERF2IP Telomeric repeat-binding factor 2-interacting protein 1 1 YLLGDAPVS(0.986)PS(0.013)SQK;YLLGDAPVS(0.772)PS(0.225)S(0.003)QK;YLLGDAPVS(0.908)PS(0.046)S(0.046)QK 235.71 8.16E-36 499480000 18300.7 14917.3 28582.1 18851.2 13913.5 12854.7 13817 18382.9 15573.5 22877.8 TRUE FALSE 18556.96626 16546.02126 21366.19536 17642.16841 15808.75426 15134.30056 16438.70362 16821.1579 17069.40426 18215.2918 1.018757562 0.908358836 1.172981229 0.96853614 0.867883668 0.830856882 0.902467213 0.923463543 0.937092002 1 14.15286249 -6.52443512 19.22958991 0.903567645 1.029180735 0.364284515 0.072639863 2.856561808 35279.96761 0.021325505 0.0279292 2.99E-07 6.52443512 0.12561309 YLLLT(ph)Y(ph)Y(ph)DANKRDR ddPTM_K562_Paclitaxel_30min_R1 1 YLLLTYYDANKRDR 14 2 A0A087WX87;A0A1W2PS33;A0A087X037;A6QL64-4;A6QL64-5;Q8N2N9-4;Q8N2N9-3;Q8N2N9-2;Q8N2N9;A6QL64 A0A087WX87 ANKRD36B;ANKRD36 Ankyrin repeat domain-containing protein 36A;Ankyrin repeat domain-containing protein 36B 3 Y(0.003)LLLT(0.998)Y(1)Y(1)DANKRDR 50.284 0.030929 0 0 0 0 0 0 0 0 0 0 0 TRUE FALSE 0 0 0 0 0 0 0 0 0 0 0 YLLSQSS(ph)PAPLTAAEEELR ddPTM_K562_Paclitaxel_30min_R1 1 YLLSQSSPAPLTAAEEELR 19 0 F8VS81;Q12792-4;Q12792;Q12792-3 F8VS81 TWF1 Twinfilin-1 1 YLLS(0.001)QS(0.031)S(0.967)PAPLT(0.001)AAEEELR 145.33 1.55E-12 9574600 1461.2 1516.4 1600.7 1701.3 1267.9 1561.7 1373.7 1437.6 1108.6 1720.1 TRUE FALSE 1481.661308 1681.96568 1196.583488 1592.186233 1440.609446 1838.645568 1634.352404 1315.466907 1215.085983 1369.542676 1.081865746 1.228122139 0.87371026 1.162567812 1.051890877 1.342525209 1.193356317 0.960515455 0.887220241 1 10.41947851 -8.328122544 6.612910671 0.94013804 1.132952856 0.336019582 0.118555257 0.299578475 24.46003013 0.067298103 0.031981496 4.70E-09 8.328122544 0.192814816 YLNSSRAS(ph)TDEPPADTQGMSIPAQPHASTR ddPTM_K562_Paclitaxel_30min_R1 1 YLNSSRASTDEPPADTQGMSIPAQPHASTR 30 1 A0A0A0MQV9;Q9UPS6-2;Q9UPS6 A0A0A0MQV9 SETD1B Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase SETD1B 1 Y(0.003)LNS(0.012)S(0.012)RAS(0.485)T(0.485)DEPPADT(0.001)QGMSIPAQPHASTR 75.191 5.38E-05 11153000 279.17 516.8 526.91 385.23 285.96 389.41 438.6 359.76 357.08 464.57 TRUE FALSE 283.0792413 573.2259717 393.8850538 360.523072 324.9125933 458.4663959 521.8220604 329.1961424 391.3791295 369.890379 0.76530577 1.549718523 1.064869691 0.974675451 0.878402391 1.239465588 1.410747859 0.889982982 1.058094916 1 8.530953966 YLNSSRAST(ph)DEPPADTQGMSIPAQPHASTR ddPTM_K562_Paclitaxel_30min_R1 1 YLNSSRASTDEPPADTQGMSIPAQPHASTR 30 1 A0A0A0MQV9;Q9UPS6-2;Q9UPS6 A0A0A0MQV9 SETD1B Histone-lysine N-methyltransferase;Histone-lysine N-methyltransferase SETD1B 1 Y(0.005)LNS(0.035)S(0.035)RAS(0.106)T(0.815)DEPPADT(0.003)QGMSIPAQPHASTR 57.073 0.011391 10044000 466.65 528.06 488.4 630.21 501.34 517.21 589.65 487.66 591.59 722.31 TRUE FALSE 473.1845397 585.7153766 365.0973795 589.7911513 569.6309958 608.9299315 701.5330093 446.2302391 648.4148628 575.1028255 0.822782499 1.018453311 0.634838438 1.025540347 0.990485476 1.058819231 1.219839267 0.775913835 1.127476399 1 9.167676116 -6.436592793 24.99987902 1.026742969 0.842253453 0.31306909 0.137059782 100.6807318 29168.47685 0.037267073 0.05527599 3.66E-07 6.436592793 -0.184489516 YLPGAITS(ph)PDEHILTPDSSFSK ddPTM_K562_Paclitaxel_30min_R1 1 YLPGAITSPDEHILTPDSSFSK 22 0 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 YLPGAIT(0.136)S(0.864)PDEHILTPDSSFSK 103.71 0.00013633 15553000 1571.7 1526.7 2563.2 2013.7 1422.1 1199.1 1502.5 2676.9 1202.8 2884.2 TRUE FALSE 1593.708649 1693.390269 1916.088459 1884.550295 1615.814096 1411.743549 1787.591531 2449.480636 1318.334314 2296.398457 0.694003536 0.737411343 0.834388498 0.820654747 0.703629673 0.614764195 0.778432648 1.066661854 0.57408779 1 11.16515728 -14.99999998 0.230268884 2.264068113 0.739321451 0.227359213 0.130339692 250.1830077 2.504657361 147.3037025 0.226544754 1.00E-15 14.99999998 -1.524746662 YLPHSAGR ddPTM_K562_Paclitaxel_30min_R1 2 YLPHSAGR 8 0 M0R0F0;M0R0R2;P46782 M0R0F0 RPS5 "40S ribosomal protein S5;40S ribosomal protein S5, N-terminally processed" 0 ; 161.9 1.20E-33 5087400 9532.4 9008.3 10859.5 10027.6 9036.6 8743.9 10013.8 10561.7 9801.9 11438.8 FALSE TRUE 9665.88301 9991.856658 8117.884916 9384.474618 10267.53791 10294.50789 11913.86627 9664.417661 10743.41629 9107.566281 1.061302516 1.097094037 0.891334157 1.030404208 1.127363512 1.130324785 1.308128418 1.061141623 1.179614395 1 13.15284987 -6.782023812 3.970264848 1.1479741 1.014750248 0.27641273 0.08979853 0.262248955 9.072586887 0.027985647 0.033876676 1.65E-07 6.782023812 -0.133223852 YLQLAEELIRPER ddPTM_K562_Paclitaxel_30min_R1 1 YLQLAEELIRPER 13 1 Q14566 Q14566 MCM6 DNA replication licensing factor MCM6 0 93.011 0.0079313 0 831.71 909.79 820.92 949.28 535.51 577.53 955.03 1182.9 904.24 1300.2 FALSE TRUE 843.356506 1009.123949 613.668593 888.3974296 608.4555283 679.9468366 1136.241957 1082.405262 991.0962923 1035.218526 0.814665198 0.97479317 0.592791355 0.858173813 0.587755641 0.656814788 1.097586575 1.045581425 0.957378821 1 10.01571963 -7.764308691 24.9999779 1.028935187 0.748567986 0.574351243 0.11706985 57.66851641 502448.987 0.049073824 0.034738298 1.72E-08 7.764308691 -0.280367201 YLS(ph)FTPPEK ddPTM_K562_Paclitaxel_30min_R1 1 YLSFTPPEK 9 0 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 YLS(0.946)FT(0.054)PPEK 118.28 0.0032967 5015100 1998.5 1811.1 3397.9 2321.2 1593.9 1509.4 1886.9 2701 1416.3 3744.1 TRUE FALSE 2026.485166 2008.842023 2540.05812 2172.328621 1811.016165 1777.070897 2244.929425 2471.533191 1552.341943 2981.050365 0.679788973 0.673870541 0.852068167 0.728712486 0.607509416 0.5961224 0.753066587 0.829081327 0.52073657 1 11.54160503 -11.97249051 2.883729003 1.250795918 0.698920598 0.467892985 0.097919296 48072717.88 9262120.434 80048312.07 0.025474551 1.07E-12 11.97249051 -0.551875321 YLS(ph)FTPPEKDGFPSGTPALNAK ddPTM_K562_Paclitaxel_30min_R1 1 YLSFTPPEKDGFPSGTPALNAK 22 1 Q13177 Q13177 PAK2 Serine/threonine-protein kinase PAK 2;PAK-2p27;PAK-2p34 1 Y(0.002)LS(0.966)FT(0.031)PPEKDGFPS(0.001)GT(0.001)PALNAK 80.031 0.0010896 25959000 1581.7 953.89 2750.1 1144.2 1243 890.91 1073.8 1941.9 1785.8 3333.4 TRUE FALSE 1603.84868 1058.038936 2055.803242 1070.816133 1412.317644 1048.90038 1277.547944 1776.923474 1957.334069 2654.05125 0.604302076 0.398650529 0.774590635 0.403464753 0.532136538 0.395207281 0.481357677 0.669513625 0.737489176 1 11.37398051 -8.937804802 1.41304383 0.992966541 0.512011437 0.646839254 0.111815636 0.244160567 1.093582258 0.102949441 0.031117661 1.15E-09 8.937804802 -0.480955105 YLSVPPSPNIS(ph)TSESRSPPEGDTTLFLSR ddPTM_K562_Paclitaxel_30min_R1 1 YLSVPPSPNISTSESRSPPEGDTTLFLSR 29 1 Q9BTC0;Q9BTC0-1 Q9BTC0 DIDO1 Death-inducer obliterator 1 1 YLSVPPS(0.039)PNIS(0.216)T(0.216)S(0.216)ES(0.184)RS(0.037)PPEGDT(0.026)T(0.026)LFLS(0.04)R 45.611 0.022819 41874000 1029.6 1306.3 1274 1293.8 984.5 1334.5 1313.5 1645.3 1077.9 1776.7 TRUE FALSE 1044.017577 1448.926252 952.3629434 1210.821459 1118.605568 1571.154838 1562.729768 1505.521495 1181.437111 1414.607565 0.738026293 1.024260217 0.673234731 0.855941598 0.790753277 1.110664807 1.104709042 1.064267952 0.835169513 1 10.46618617 -7.253444891 24.80826462 1.032088185 0.82222693 0.459920671 0.111590045 501.8444893 1557310.086 0.036602937 0.035993401 5.58E-08 7.253444891 -0.209861255 YMAICS(ph)PLLYS(ph)VIIS(ph)NK ddPTM_K562_Paclitaxel_30min_R1 1 YMAICSPLLYSVIISNK 17 0 Q15617 Q15617 OR8G1 Olfactory receptor 8G1 3 Y(0.225)MAICS(0.773)PLLY(0.019)S(0.983)VIIS(1)NK 53.779 0.021314 2159300 160.58 234.62 288.06 177.2 53.818 135.19 128.75 201.68 265.23 176.01 TRUE FALSE 162.8286154 260.236605 215.3356903 165.8351851 61.14892275 159.1640483 153.1796404 184.5460252 290.7065266 140.1390654 1.161907388 1.856988302 1.536585746 1.183361575 0.436344588 1.135757884 1.093054531 1.316877807 2.074414624 1 7.13071537 -6.266003857 6.437473705 1.153434419 1.553928794 0.125066179 0.407764921 0.282191797 63.19194216 0.119204206 0.190540192 5.42E-07 6.266003857 0.400494375 YMLTHQELAS(ph)DGEIETK ddPTM_K562_Paclitaxel_30min_R1 4 YMLTHQELASDGEIETK 17 0 Q02241-2;A0A2U3TZL8;Q02241-3;Q02241;H7BYN4 Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 YMLTHQELAS(0.996)DGEIET(0.004)K;YMLTHQELAS(0.995)DGEIET(0.005)K;YMLTHQELAS(0.996)DGEIET(0.004)K;YMLTHQELAS(0.997)DGEIET(0.003)K 164.94 9.83E-09 159806000 9622.5 8707.4 14913.3 9894.7 8572.9 7355 6729 9962.1 11211.3 12434.4 TRUE FALSE 9757.244688 9658.103379 11148.25297 9260.098229 9740.67412 8659.305981 8005.792622 9115.757424 12288.19546 9900.262455 0.985554144 0.975540136 1.126056306 0.935338661 0.983880394 0.874654184 0.808644484 0.920759168 1.24119896 1 13.27325106 -4.375521253 19.30877182 0.977215351 0.983422504 0 0.116770188 0 0 0.027389893 0 4.21E-05 4.375521253 0.006207152 YMLTHQELASDGEIET(ph)K ddPTM_K562_Paclitaxel_30min_R1 1 YMLTHQELASDGEIETK 17 0 Q02241-2;A0A2U3TZL8;Q02241-3;Q02241;H7BYN4 Q02241-2 KIF23 Kinesin-like protein KIF23;Kinesin-like protein 1 YMLTHQELAS(0.155)DGEIET(0.845)K 121.99 0.00016489 17917000 569.15 418.09 1044.4 566.46 584.47 482.93 555.11 699.92 611.85 795.92 TRUE FALSE 577.119856 463.7384801 780.728303 530.129791 664.0847092 568.5708548 660.4392246 640.4574272 670.6209263 633.7110671 0.910698717 0.731782202 1.231994111 0.836548103 1.047929796 0.89720834 1.042177199 1.010645798 1.058243987 1 9.307681401 -5.72951566 24.99994789 1.007455655 0.821240474 0.345916618 0.106431265 209.0180787 163682.4129 0.024947691 0.065992986 1.86E-06 5.72951566 -0.186215181 YMNSDTTS(ph)PELR ddPTM_K562_Paclitaxel_30min_R1 1 YMNSDTTSPELR 12 0 Q96ST3 Q96ST3 SIN3A Paired amphipathic helix protein Sin3a 1 YMNSDTT(0.001)S(0.999)PELR 162.88 0.001405 49629000 2805.2 2787.6 3029.5 2466.2 2538 2247 2614.4 2638.7 1784.1 3254.3 TRUE FALSE 2844.481455 3091.959595 2264.665257 2308.02897 2883.718569 2645.473901 3110.468752 2414.525965 1955.470777 2591.071874 1.097801062 1.19331294 0.874026413 0.890762234 1.11294426 1.020995954 1.200456376 0.931863755 0.75469569 1 11.33933332 -8.512557825 24.51755216 0.865991774 1.049830709 0.288011656 0.117023978 484.659409 1151336.48 0.072521892 0.031085054 3.07E-09 8.512557825 0.183838935 YMPAVTST(ph)PTVNQHETSTSK ddPTM_K562_Paclitaxel_30min_R1 1 YMPAVTSTPTVNQHETSTSK 20 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 YMPAVTS(0.132)T(0.573)PT(0.294)VNQHETSTSK 119.51 3.47E-05 18970000 1474 1007.9 2054.8 1241.1 1215.5 1186.9 1098.9 1329.3 1617.2 2090.3 TRUE FALSE 1494.640548 1117.94593 1536.040327 1161.501401 1381.071679 1397.38005 1307.410538 1216.367668 1772.539286 1664.295713 0.898061887 0.671723133 0.922937141 0.697893645 0.829823491 0.839622454 0.785563844 0.730860302 1.065038666 1 10.70069608 -8.766244996 24.99999918 1.032519459 0.795900708 0.592047753 0.078176166 78.69744956 409379.6764 0.061623849 0.017924463 1.71E-09 8.766244996 -0.23661875 YMSQMS(ph)VPEQAELEK ddPTM_K562_Paclitaxel_30min_R1 2 YMSQMSVPEQAELEK 15 0 A0A5H1ZRS1;A0A4W8VX11;Q15154-5;Q15154-4;Q15154-2;Q15154;E9PGW9;E7EV93;E5RGQ4;Q15154-3 A0A5H1ZRS1 PCM1 Pericentriolar material 1 protein 1 YMSQMS(1)VPEQAELEK;YMSQMS(1)VPEQAELEK 191.93 2.84E-07 76097000 3375.2 2410.9 3751.3 2437.8 1732.21 1890.1 2138.06 3193.2 2150.3 4136.9 TRUE FALSE 3422.463213 2674.130215 2804.23792 2281.450419 1968.166329 2225.282697 2543.745724 2921.917729 2356.845923 3293.797509 1.039063028 0.811868431 0.851369251 0.692650478 0.597537135 0.675597905 0.772283577 0.887096951 0.715540623 1 11.68553615 -4.978785868 1.351289543 0.754070713 1.339052422 0.334351913 0.110436818 2.84106163 2.814538198 0.03239698 2.723120097 1.05E-05 4.978785868 0.584981709 YMYNQS(ph)FTLVT(ph)QAGMQWR ddPTM_K562_Paclitaxel_30min_R1 1 YMYNQSFTLVTQAGMQWR 18 0 A0A6I8PUC8 A0A6I8PUC8 2 Y(0.17)MY(0.17)NQS(0.521)FT(0.143)LVT(0.996)QAGMQWR 45.659 0.028531 19803000 226.77 181.73 301.74 148.11 111.7 190.13 143.25 223.3 174.98 265.21 TRUE FALSE 229.9454796 201.571896 225.5620051 138.6108875 126.9154311 223.8468859 170.4309397 204.3292712 191.7876108 211.1600564 1.088962958 0.954592925 1.068203944 0.656425698 0.601039009 1.060081579 0.807117324 0.967651149 0.908257054 1 7.722193146 -6.213817957 24.99697643 0.851566625 1.028987326 0.256843318 0.139889168 602.6080154 316314.3504 0.039462392 0.068350665 6.11E-07 6.213817957 0.177420701 YNDWS(ph)DDDDDSNESK ddPTM_K562_Paclitaxel_30min_R1 2 YNDWSDDDDDSNESK 15 0 H3BV87;Q9UH62 H3BV87 ARMCX3 Armadillo repeat-containing X-linked protein 3 1 YNDWS(1)DDDDDSNESK;YNDWS(0.994)DDDDDS(0.006)NESK 255.72 3.74E-73 23348000 4428 2956.25 7995.2 4742.4 3231.2 3370.4 2900.39 4815.6 3949.4 5416.2 TRUE FALSE 4490.005662 3279.023372 5976.712877 4438.24369 3671.344145 3968.093117 3450.723861 4406.484722 4328.757516 4312.375467 1.0411908 0.760375203 1.385944457 1.029187677 0.851350763 0.920164106 0.800190959 1.021823066 1.003798846 1 12.07426708 -6.581345519 9.211065772 0.927632967 1.061264226 0.131073134 0.154398251 0.676303145 99.81945459 0.046319198 0.059851429 2.62E-07 6.581345519 0.133631259 YNGLIHR ddPTM_K562_Paclitaxel_30min_R1 1 YNGLIHR 7 0 H0YKD8;P46779;P46779-2;P46779-3;H0YLP6;H0YMF4;P46779-4;P46779-5 H0YKD8 RPL28 60S ribosomal protein L28 0 97.602 0.024844 9544100 6738.3 6813.6 8672.6 7869.2 6568.4 6703.6 7184 8195 5433.7 8651.4 FALSE TRUE 6832.656989 7557.53189 6483.094869 7364.504733 7463.127284 7892.389337 8547.126497 7498.783598 5955.631163 6888.239931 0.991930748 1.097164438 0.941183079 1.069141727 1.083459252 1.145777356 1.240828801 1.088635656 0.864608554 1 12.74991968 -5.245138971 22.0501016 1.067544449 0.991930443 0.032922859 0.099718754 2233.9603 3021690.349 0.025956899 0.550427737 5.69E-06 5.245138971 -0.075614006 YPHVEDYRR ddPTM_K562_Paclitaxel_30min_R1 2 YPHVEDYRR 9 1 A0A087WTV2;B3KQ25;K7ESG5;K9J957;P61289;P61289-3;P61289-2 A0A087WTV2 PSME3 Proteasome activator complex subunit 3 0 ; 101.6 0.004689 8062500 1217.77 1317.32 1325.72 1343.93 1123.14 1303.69 1405.31 1801.83 1149.53 2147.25 FALSE TRUE 1234.822537 1461.149452 991.0255897 1257.736345 1276.130683 1534.881117 1671.960236 1648.753295 1259.947493 1709.639271 0.722270808 0.854653655 0.579669411 0.735673523 0.746432715 0.897780685 0.977960827 0.964386653 0.736966864 1 10.73947624 -7.256247526 3.682621164 0.919706311 0.724264689 0.515978978 0.091282705 0.197292596 5.953931435 0.032511487 0.03047573 5.54E-08 7.256247526 -0.195441622 YPPYTT(ph)PPR ddPTM_K562_Paclitaxel_30min_R1 1 YPPYTTPPR 9 0 O43896 O43896 KIF1C Kinesin-like protein KIF1C 1 YPPYT(0.017)T(0.983)PPR 104.2 0.021918 10092000 1304.6 1112.5 1241.1 1408.7 1179.2 1093 1017.2 1273.1 1138.6 1330.4 TRUE FALSE 1322.868425 1233.966512 927.7689553 1318.352287 1339.827004 1286.828204 1210.20839 1164.942209 1247.967617 1059.26375 1.248856506 1.164928482 0.875862084 1.244593037 1.264866285 1.214832665 1.142499581 1.099765954 1.178146253 1 10.04884614 -11.33847457 3.963077005 0.999626774 1.156188254 0.166273084 0.106848048 84663271.11 164.013362 288347.114 0.026985848 4.59E-12 11.33847457 0.15656148 YPSSISSS(ph)PQKDLTQAK ddPTM_K562_Paclitaxel_30min_R1 2 YPSSISSSPQKDLTQAK 17 1 F8W726;Q14157-4;Q14157-1;Q14157-3;Q14157;Q14157-5 F8W726 UBAP2L Ubiquitin-associated protein 2-like 1 Y(0.003)PS(0.023)S(0.023)IS(0.022)S(0.068)S(0.862)PQKDLTQAK;YPS(0.001)S(0.001)IS(0.003)S(0.051)S(0.944)PQKDLTQAK 76.118 0.015478 108322000 4615.4 3398.7 9958.4 5209.7 3538.8 2769.9 2812.1 5152.4 3913.3 5932.2 TRUE FALSE 4680.02984 3769.78156 7444.278756 4875.57316 4020.844472 3261.102874 3345.681295 4714.67146 4289.18995 4723.214384 0.990856959 0.79813899 1.576104354 1.032257434 0.851294086 0.690441426 0.708348388 0.99819129 0.90810825 1 12.2055533 -6.679238491 4.639123311 0.843171211 1.119966274 0.248607551 0.206097865 0.29584251 11.49775237 0.064547144 0.083266039 2.09E-07 6.679238491 0.276795063 YQDEVFGGFVTEPQEES(ph)EEEVEEPEER ddPTM_K562_Paclitaxel_30min_R1 7 YQDEVFGGFVTEPQEESEEEVEEPEER 27 0 Q13283 Q13283 G3BP1 Ras GTPase-activating protein-binding protein 1 1 YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER;YQDEVFGGFVTEPQEES(1)EEEVEEPEER 204.7 4.60E-50 1429215000 23621.5 23091 31225.3 26589.2 24586.16 22633.6 24452.3 29087.9 18430.22 32131.5 TRUE FALSE 23952.27388 25612.15347 23342.08683 24883.88772 27935.21124 26647.35117 29091.99628 26616.70133 20200.52498 25583.08266 0.936254407 1.001136329 0.912403213 0.972669637 1.09194078 1.04160048 1.137157576 1.040402429 0.789604804 1 14.64290249 -6.540975971 24.17538694 1.026631348 0.952965905 0.100913147 0.088335097 350.5745551 468315.8306 0.026765021 0.034561272 2.88E-07 6.540975971 -0.073665443 YQEDSDPERS(ph)DYEEQQLQKEEEAR ddPTM_K562_Paclitaxel_30min_R1 1 YQEDSDPERSDYEEQQLQKEEEAR 24 2 Q6P6C2-3;Q6P6C2;Q6P6C2-1 Q6P6C2-3 ALKBH5 RNA demethylase ALKBH5 1 Y(0.003)QEDS(0.017)DPERS(0.521)DY(0.459)EEQQLQKEEEAR 44.863 0.028623 18502000 2760.3 2167.1 4869.7 2914.2 2238.1 2232.2 1714.7 2716.7 1983.4 3194.7 TRUE FALSE 2798.952716 2403.711307 3640.284007 2727.296255 2542.967111 2628.049328 2040.055374 2485.899378 2173.914432 2543.618386 1.100382326 0.944996828 1.431143927 1.072211252 0.999743957 1.033193243 0.802028867 0.977308307 0.854654316 1 11.31266653 -7.028355139 1.693595657 0.916554188 1.144758022 0.366114281 0.128744597 0.402257887 2.330466624 0.050739196 0.054934408 9.37E-08 7.028355139 0.228203834 YQEQGGEAS(ph)PQRTWEQQQEVVSR ddPTM_K562_Paclitaxel_30min_R1 2 YQEQGGEASPQRTWEQQQEVVSR 23 1 H0Y5J4;Q9UJU6-5;Q9UJU6 H0Y5J4 DBNL Drebrin-like protein 1 Y(0.047)QEQGGEAS(0.711)PQRT(0.241)WEQQQEVVSR;Y(0.015)QEQGGEAS(0.876)PQRT(0.109)WEQQQEVVSR 57.981 0.020303 171210000 873.04 911.76 1372.65 1205.03 1003.1 848.79 749.42 1036.69 1175.53 1152.06 TRUE FALSE 885.2652536 1011.30904 1026.107531 1127.744769 1139.739203 999.3109889 891.6185328 948.6167137 1288.444909 917.2695396 0.96510918 1.10252112 1.118654317 1.229458431 1.242534668 1.089440939 0.972035475 1.034174441 1.404652453 1 9.841201922 -5.236430452 2.31047174 1.136888174 0.916438988 0.148891658 0.122648945 1.330622768 7.984112727 0.032893133 0.608002552 5.80E-06 5.236430452 -0.220449187 YQILPLHSQIPR ddPTM_K562_Paclitaxel_30min_R1 1 YQILPLHSQIPR 12 0 Q08211 Q08211 DHX9 ATP-dependent RNA helicase A 0 101.72 0.0025002 0 1676.6 1725.8 1825.6 1862.6 1282.1 1234.5 1457.3 1589.1 1469.1 1841.5 FALSE TRUE 1700.077573 1914.22868 1364.704701 1743.141173 1456.743726 1453.421242 1733.815067 1454.096036 1610.213619 1466.201289 1.159511716 1.305570179 0.930775816 1.188882581 0.993549615 0.991283566 1.182521854 0.991743799 1.098221391 1 10.51786746 -5.751718131 24.99945395 1.052818469 1.232540956 0.416253994 0.087623117 183.8157632 472696.6609 0.020848059 0.05369047 1.77E-06 5.751718131 0.179722487 YQPLASTAS(ph)DNDFVTPEPR ddPTM_K562_Paclitaxel_30min_R1 2 YQPLASTASDNDFVTPEPR 19 0 Q15021 Q15021 NCAPD2 Condensin complex subunit 1 1 YQPLAST(0.015)AS(0.965)DNDFVT(0.02)PEPR;YQPLAST(0.374)AS(0.626)DNDFVTPEPR 188.09 2.44E-16 265640000 3561.7 3495.7 4545 4604.9 3358.2 3058.6 3599.5 3852.4 4203.1 4399.7 TRUE FALSE 3611.574789 3877.372348 3397.558538 4309.562325 3815.643695 3600.999765 4282.486334 3525.114574 4606.826535 3503.038725 1.030983404 1.106859687 0.969888946 1.230235422 1.089238228 1.02796459 1.222506136 1.006301914 1.315094379 1 11.77439122 -6.247622169 24.9792689 1.125834708 1.043005592 0.140141294 0.103282309 1696.074374 3066223.334 0.026150881 0.044972866 5.65E-07 6.247622169 -0.082829116 YQPLASTASDNDFVT(ph)PEPR ddPTM_K562_Paclitaxel_30min_R1 1 YQPLASTASDNDFVTPEPR 19 0 Q15021 Q15021 NCAPD2 Condensin complex subunit 1 1 YQPLASTAS(0.005)DNDFVT(0.995)PEPR 133.93 6.42E-09 18417000 1046.7 1181.7 1536.5 1188.1 831.55 1010 1082.3 1316.5 1109.8 1347 TRUE FALSE 1061.357029 1310.722002 1148.591572 1111.900584 944.8211883 1189.109319 1287.660775 1204.655108 1216.401249 1072.480661 0.989628129 1.222140455 1.070967164 1.036755836 0.880968043 1.108746631 1.200637757 1.1232418 1.13419411 1 10.06673592 -7.503196304 24.86716766 1.129060534 1.046047854 0.128872891 0.091646374 1436.65551 1815102.609 0.033750593 0.029348806 3.14E-08 7.503196304 -0.08301268 YQQIT(ph)PVNQSR ddPTM_K562_Paclitaxel_30min_R1 1 YQQITPVNQSR 11 0 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 YQQIT(1)PVNQSR 149.82 0.0010137 41329000 1763.6 1646.1 2137.5 1771.3 1597 1420.3 1529.3 1806.4 1197.9 2125.2 TRUE FALSE 1788.295841 1825.826765 1597.861689 1657.696746 1814.538437 1672.170263 1819.476692 1652.935045 1312.963647 1692.083073 1.056860546 1.079040854 0.944316336 0.979678109 1.072369593 0.988231777 1.07528804 0.976864003 0.775945146 1 10.72458468 -8.534410156 24.61198629 0.88411647 1.025112308 0.412836243 0.066143443 170.4094115 363702.1377 0.042143417 0.015958474 2.92E-09 8.534410156 0.140995837 YQQITPVNQS(ph)R ddPTM_K562_Paclitaxel_30min_R1 2 YQQITPVNQSR 11 0 Q9NYL2 Q9NYL2 ZAK Mitogen-activated protein kinase kinase kinase MLT 1 YQQITPVNQS(1)R;YQQITPVNQS(1)R 158.86 0.00045424 68388000 3148.2 2695 2638.5 2425.5 2079.5 2475.5 2816.8 3322.2 2809.3 5397.1 TRUE FALSE 3192.284513 2989.249214 1972.378042 2269.939286 2362.763106 2914.495167 3351.273095 3039.958373 3079.145817 4297.168057 0.742881002 0.695632373 0.458994858 0.528240752 0.549841913 0.678236254 0.779879458 0.707432973 0.716552338 1 12.06917049 -7.565638264 3.081323864 0.777286694 0.589889029 0.441217481 0.107587616 0.280565971 5.463042824 0.045573446 0.035178965 2.72E-08 7.565638264 -0.187397665 YQQPFEDFRIS(ph)QEHLADHFDSR ddPTM_K562_Paclitaxel_30min_R1 2 YQQPFEDFRISQEHLADHFDSR 22 1 V9GY71;V9GYH5;P19174;P19174-2 V9GY71 PLCG1 "1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase gamma-1" 1 Y(0.005)QQPFEDFRIS(0.995)QEHLADHFDSR;Y(0.058)QQPFEDFRIS(0.942)QEHLADHFDSR 58.479 0.013476 46834000 2909 2402.4 2818.1 2608.1 2272.7 2100.1 2141.93 2185.4 2469.4 2330 TRUE FALSE 2949.734975 2664.702156 2106.635801 2440.828139 2582.280217 2472.523248 2548.350036 1999.736629 2706.596904 1855.144721 1.590029576 1.436385057 1.13556413 1.315707671 1.391956211 1.33279265 1.373666435 1.07794104 1.458968065 1 10.85731602 -14.99999987 0.097106306 2.84E-11 1.562804931 0.387757587 0.137380286 218.0360236 1.447068881 45.14663065 2.581796742 1.00E-15 14.99999987 1.56280493 YQVS(ph)DGSLTVTSVSR ddPTM_K562_Paclitaxel_30min_R1 2 YQVSDGSLTVTSVSR 15 0 H0YDP1;Q9UPX0;Q9UPX0-2 H0YDP1 IGSF9B Protein turtle homolog B 1 YQVS(0.5)DGS(0.5)LTVTSVSR;YQVS(0.478)DGS(0.478)LT(0.032)VT(0.01)S(0.002)VSR 124.81 0.00025565 343720000 903.75 736.32 1267.05 952.22 1119.92 1028.61 1430.9 1103.14 875.59 1522.18 TRUE FALSE 916.4052883 816.7139077 947.1675568 891.1488712 1272.472064 1211.019541 1702.405805 1009.421371 959.6943317 1211.95888 0.756135627 0.673879222 0.781517898 0.735296292 1.049930064 0.999224941 1.404672908 0.832884174 0.791853872 1 10.24312504 -6.758255861 24.85188217 1.023624013 0.735420242 0.428639146 0.156039806 77.26897898 603188.605 0.049447554 0.061150933 1.74E-07 6.758255861 -0.288203771 YRDFDIPAEFSGVWR ddPTM_K562_Paclitaxel_30min_R1 1 YRDFDIPAEFSGVWR 15 1 O15247 O15247 CLIC2 Chloride intracellular channel protein 2 0 106.6 0.019945 7602100 941.16 810.4 1046.8 777.45 761.16 935.42 868.64 1139.8 1084 1337.6 FALSE TRUE 954.3391437 898.8822126 782.5223933 727.5878367 864.8428785 1101.303603 1033.459905 1042.966876 1188.123043 1064.996386 0.896096134 0.844023721 0.734765304 0.683183386 0.812061797 1.0340914 0.970388181 0.979314944 1.115612277 1 10.05663282 -7.223956214 5.513215943 1.015827682 0.785661749 0.747468794 0.065603002 0.107887397 9.041087564 0.023835496 0.023368642 5.97E-08 7.223956214 -0.230165934 YRHDENILESEPIVYRR ddPTM_K562_Paclitaxel_30min_R1 1 YRHDENILESEPIVYRR 17 2 Q96F86;H3BSQ0;H3BPN4 Q96F86 EDC3 Enhancer of mRNA-decapping protein 3 0 64.244 0.015845 4174800 1130.1 992.38 1124.7 953.88 852.57 901.82 1170.1 1266.4 1451.8 1497.1 FALSE TRUE 1145.924887 1100.731404 840.7555749 892.7024062 968.7044681 1061.745115 1392.120367 1158.811415 1591.251877 1191.990198 0.961354287 0.92343998 0.705337658 0.748917573 0.812678216 0.890733092 1.167895817 0.972165222 1.334953827 1 10.21915666 -7.654727838 4.441710224 1.116115352 0.82640659 0.583411996 0.115842201 0.157524689 5.406012307 0.046156631 0.034877543 2.21E-08 7.654727838 -0.289708762 YRLS(ph)PTLSSTK ddPTM_K562_Paclitaxel_30min_R1 1 YRLSPTLSSTK 11 1 Q8NEM0;Q8NEM0-3;Q8NEM0-2 Q8NEM0 MCPH1 Microcephalin 1 YRLS(0.996)PT(0.003)LSS(0.001)TK 77.744 0.028816 27316000 2409.7 2275.3 3913.7 2776.5 2454.1 1958 1845.7 3115.7 2006.7 3738.4 TRUE FALSE 2443.443235 2523.724949 2925.638031 2598.427717 2788.389968 2305.223808 2195.91194 2851.001837 2199.452501 2976.512028 0.820908235 0.847879977 0.982908184 0.872977395 0.936797816 0.774471525 0.737746705 0.957833132 0.738936205 1 11.53940701 -7.252600421 24.9176875 0.832658907 0.893787796 0.067232986 0.090826214 1565.211378 4412450.193 0.029219029 0.028807108 5.59E-08 7.252600421 0.061128888 YRPENTPEPVSTSVSHYGAEPT(ph)TVSPCPSSSAK ddPTM_K562_Paclitaxel_30min_R1 2 YRPENTPEPVSTSVSHYGAEPTTVSPCPSSSAK 33 1 J3QRU1;P07947 J3QRU1 YES1 Non-specific protein-tyrosine kinase;Tyrosine-protein kinase Yes 1 YRPENTPEPVS(0.001)T(0.001)S(0.001)VS(0.003)HY(0.036)GAEPT(0.39)T(0.39)VS(0.164)PCPS(0.007)S(0.004)S(0.002)AK;YRPENTPEPVSTSVSHY(0.006)GAEPT(0.33)T(0.33)VS(0.33)PCPS(0.003)S(0.001)SAK 74.058 4.09E-05 69269000 5311.3 4268.9 7499.5 5542.3 4600.2 3513.54 3838.8 5018.4 5834.9 5365.1 TRUE FALSE 5385.674587 4734.992938 5606.158472 5186.841684 5226.825122 4136.616986 4567.19226 4592.055596 6395.368216 4271.689675 1.260783202 1.108459017 1.312398348 1.214236538 1.223596637 0.968379564 1.069176979 1.074997471 1.497151877 1 12.06059113 YRS(ph)DIHTEAVQAALAK ddPTM_K562_Paclitaxel_30min_R1 1 YRSDIHTEAVQAALAK 16 1 Q9P265 Q9P265 DIP2B Disco-interacting protein 2 homolog B 1 Y(0.04)RS(0.867)DIHT(0.093)EAVQAALAK 84.436 0.011778 26850000 1817.2 1412.8 2842 1824 1503.4 1485.8 1732.4 2649.4 2032.5 3387.6 TRUE FALSE 1842.646407 1567.054282 2124.501951 1707.016804 1708.188533 1749.285768 2061.113856 2424.316933 2227.730706 2697.205261 0.683168772 0.580991853 0.78766788 0.632883536 0.63331796 0.64855493 0.764166482 0.898825525 0.825940368 1 11.3972496 -8.087360164 2.15055385 0.906181103 0.659820431 0.751050246 0.063601745 0.16425265 1.473084083 0.037701481 0.018548527 8.18E-09 8.087360164 -0.246360671 YRS(ph)PEPDPYLSYR ddPTM_K562_Paclitaxel_30min_R1 3 YRSPEPDPYLSYR 13 1 H3BRT8;H3BQR7;H3BV35;H3BRK0;H3BUL5;H3BVF8;H3BQG1;P49761-2;P49761-3;P49761-1;P49761 H3BRT8 CLK3 Dual specificity protein kinase CLK3 1 Y(0.031)RS(0.969)PEPDPYLSYR;Y(0.145)RS(0.855)PEPDPYLSYR;Y(0.014)RS(0.986)PEPDPYLSYR 161.94 0.00029446 889342000 4879.06 4520.7 6057 5663.9 4100.23 4791.55 4412.07 5523.1 4660.94 6290.8 TRUE FALSE 4947.381893 5014.285314 4527.835438 5300.642805 4658.750743 5641.264116 5249.23725 5053.878181 5108.644113 5008.731507 0.987751467 1.001108825 0.903988451 1.058280484 0.930125869 1.126285988 1.048017296 1.009013594 1.019947686 1 12.29022956 -7.238644992 24.99927172 1.041676557 0.978174619 0.290050614 0.050320801 1075.02839 1179016.483 0.016233783 0.016220703 5.77E-08 7.238644992 -0.063501937 YRS(ph)PYSGPK ddPTM_K562_Paclitaxel_30min_R1 3 YRSPYSGPK 9 1 G3XAC6;Q14498-2;Q14498;Q5QP22;Q5QP23 G3XAC6 RBM39 RNA-binding protein 39 1 YRS(1)PYSGPK;YRS(1)PYSGPK;YRS(1)PYSGPK 143 0.0018547 1361280000 12536.6 10401.6 19986.6 13714 10215.2 9369.8 9108.4 12714.6 11614.1 15234.9 TRUE FALSE 12712.15108 11537.28186 14940.73564 12834.44542 11606.68318 11031.40247 10836.67135 11634.41537 12729.6862 12130.01902 1.047991026 0.951134689 1.231715764 1.058072984 0.956856141 0.90942994 0.893376287 0.959142385 1.049436623 1 13.56629419 -6.736926819 5.268267222 0.95289681 1.076422129 0.336208428 0.075982507 0.208261587 15.49761583 0.023898161 0.029936722 1.83E-07 6.736926819 0.123525319 YRS(ph)QSGEDESMNQPGPIK ddPTM_K562_Paclitaxel_30min_R1 1 YRSQSGEDESMNQPGPIK 18 1 A0A0C4DG33;O43933-2;O43933 A0A0C4DG33 PEX1 Peroxisome biogenesis factor 1 1 Y(0.001)RS(0.779)QS(0.207)GEDES(0.013)MNQPGPIK 70.345 0.017057 35386000 3752.2 3586.7 6137.5 4110.8 3308.3 3108.2 3113 3852 4113.2 4984 TRUE FALSE 3804.742377 3978.308035 4588.012217 3847.151687 3758.94647 3659.395629 3703.675499 3524.748557 4508.291238 3968.258064 0.958794089 1.00253259 1.156177885 0.969481225 0.947253533 0.922166747 0.933325262 0.888235719 1.136088219 1 11.95429013 -5.243185474 20.05150528 0.990075742 0.958793669 0.013612642 0.083441444 1687.034419 1852680.831 0.021560546 0.47148914 5.71E-06 5.243185474 -0.031282072 YRS(ph)SPTVYNSPTDKEDYMTDLR ddPTM_K562_Paclitaxel_30min_R1 1 YRSSPTVYNSPTDKEDYMTDLR 22 2 Q96SK2-3;Q96SK2-2;Q96SK2 Q96SK2-3 TMEM209 Transmembrane protein 209 1 Y(0.056)RS(0.512)S(0.259)PT(0.136)VY(0.036)NSPTDKEDYMTDLR 83.317 0.00682 10528000 444.17 397.35 623.62 403.87 335.97 381.1 474.84 665.68 620.8 726.6 TRUE FALSE 450.3897504 440.7340168 466.1794182 377.9675859 381.734802 448.6827341 564.9384112 609.126329 680.4306138 578.5185212 0.778522612 0.761832164 0.805815892 0.653337053 0.659848887 0.775571944 0.976526058 1.052907222 1.176160467 1 9.176219337 -7.862359256 2.401260048 1.083303277 0.730972484 0.869161749 0.060450291 0.102927592 1.204066041 0.031993333 0.019650848 1.37E-08 7.862359256 -0.352330793 YRSQS(ph)GEDESMNQPGPIK ddPTM_K562_Paclitaxel_30min_R1 1 YRSQSGEDESMNQPGPIK 18 1 A0A0C4DG33;O43933-2;O43933 A0A0C4DG33 PEX1 Peroxisome biogenesis factor 1 1 YRS(0.187)QS(0.813)GEDESMNQPGPIK 100.76 0.00074807 44275000 2094.1 1734.4 3699.4 2539.9 2055 2052.3 1794.8 2695.4 2444.8 3039.7 TRUE FALSE 2123.423861 1923.767657 2765.440716 2377.002182 2334.925791 2416.246589 2135.353931 2466.408946 2679.633964 2420.207471 0.877372657 0.794877167 1.142646136 0.982148105 0.964762657 0.998363412 0.882302016 1.019089882 1.10719184 1 11.24091501 -5.738832894 24.99826437 1.004863538 0.836124809 0.4941659 0.070902497 203.9379371 225511.2613 0.018300692 0.048344981 1.82E-06 5.738832894 -0.168738729 YRTEAHQDVVGR ddPTM_K562_Paclitaxel_30min_R1 3 YRTEAHQDVVGR 12 1 E9PMU0;A0A087WV29;Q9H0A0-2;Q9H0A0 E9PMU0 NAT10 N-acetyltransferase 10 0 ;; 108.35 0.006844 7495400 4120.04 3930.27 5011.65 4292.49 3899.87 4312.79 3789.66 4858.08 3860.96 4793.42 FALSE TRUE 4177.733271 4359.39017 3746.396974 4017.188904 4431.098319 5077.602752 4508.728202 4445.355781 4231.822459 3816.518373 1.094645136 1.142242679 0.981626867 1.052579475 1.16103157 1.33042796 1.181372068 1.164767295 1.108817526 1 11.89804142 -5.250611633 21.04948633 1.132512545 1.094644954 0.003029287 0.095280091 1237.774952 2405801.095 0.025769136 0.306370466 5.62E-06 5.250611633 -0.03786759 YS(ph)LTVAVK ddPTM_K562_Paclitaxel_30min_R1 1 YSLTVAVK 8 0 P00519-2;P00519;P42684-8;P42684-4;P42684-7;P42684-10;P42684-5;P42684-2;P42684-6;P42684-3;P42684 P00519-2;P42684-4 ABL1;ABL2 Tyrosine-protein kinase ABL1;Abelson tyrosine-protein kinase 2 1 Y(0.314)S(0.682)LT(0.004)VAVK 119.62 0.0044578 24521000 2605.5 2033.8 3713.3 2882.8 2102 1855.9 2062.8 2637.4 2295.9 3161.5 TRUE FALSE 2641.985039 2255.857162 2775.831489 2697.910111 2388.327987 2185.017807 2454.205531 2413.336408 2516.431453 2517.184565 1.04957939 0.896182661 1.102752467 1.071796701 0.948809245 0.868040364 0.974980367 0.958744322 0.999700812 1 11.29759529 -6.78445596 24.91246375 0.952629491 1.025704914 0.243024803 0.061297087 334.1570578 361679.7716 0.019650236 0.022295036 1.64E-07 6.78445596 0.073075422 YS(ph)PGMDAYHCVK ddPTM_K562_Paclitaxel_30min_R1 1 YSPGMDAYHCVK 12 0 A0A024R8F3;A0A1B0GTD0;Q5VTD9-2;Q5VTD9 A0A024R8F3 GFI1B Zinc finger protein Gfi-1b 1 Y(0.007)S(0.993)PGMDAYHCVK 83.692 0.01956 5216500 1743.8 1744.9 2277.2 1725.9 1588.3 1535.9 1606.3 2186.4 1654.2 2576.9 TRUE FALSE 1768.21858 1935.414083 1702.292696 1615.208499 1804.65335 1808.2703 1911.08704 2000.651673 1813.093301 2051.726366 0.861819885 0.943310041 0.829687976 0.787243624 0.879577989 0.88134087 0.931453176 0.975106479 0.883691574 1 11.00262262 -7.708841426 2.281470031 0.948798841 0.859784353 0.453025507 0.045937856 0.309843705 3.297864285 0.022430006 0.015279967 1.96E-08 7.708841426 -0.089014488 YS(ph)PSNGPPQPTPPPHYR ddPTM_K562_Paclitaxel_30min_R1 1 YSPSNGPPQPTPPPHYR 17 0 O75081;O75081-2;O75081-4;H3BNH2 O75081 CBFA2T3 Protein CBFA2T3 1 Y(0.037)S(0.881)PS(0.082)NGPPQPTPPPHYR 135.23 3.65E-14 0 980.9 1061.5 1377.2 1090 839.79 842.88 921.15 1350 821.22 1319.5 TRUE FALSE 994.6356263 1177.39816 1029.508827 1020.092279 954.1836158 992.3529334 1095.933404 1235.309074 900.1018503 1050.585176 0.946744395 1.120706999 0.979938467 0.970975321 0.908240129 0.944571612 1.043164732 1.17582953 0.856762375 1 10.03697742 -7.781931767 24.75560269 1.033591638 0.981517797 0.036156379 0.089527288 660.6238319 798051.121 0.037480721 0.025303633 1.65E-08 7.781931767 -0.052073841 YS(ph)PSQNS(ph)PIHHIPSR ddPTM_K562_Paclitaxel_30min_R1 1 YSPSQNSPIHHIPSR 15 0 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7;H0YF00 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 2 Y(0.03)S(0.969)PS(0.017)QNS(0.738)PIHHIPS(0.247)R 119.37 0.0017181 36948000 1809.3 1362.2 2628.2 2341.1 1840 1355.3 1474.7 2070.2 742.86 2412 TRUE FALSE 1834.635782 1510.929603 1964.678405 2190.952324 2090.639151 1595.643426 1754.516627 1894.323588 814.2150222 1920.433076 0.955323987 0.786765038 1.023039245 1.140863669 1.088629006 0.830876871 0.91360467 0.986404375 0.423974692 1 10.90721597 YS(ph)PSQNS(ph)PIHHIPSRR ddPTM_K562_Paclitaxel_30min_R1 3 YSPSQNSPIHHIPSRR 16 1 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7;H0YF00 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 2 Y(0.072)S(0.827)PS(0.216)QNS(0.867)PIHHIPS(0.018)RR;Y(0.025)S(0.667)PS(0.334)QNS(0.972)PIHHIPS(0.003)RR;Y(0.014)S(0.879)PS(0.107)QNS(0.999)PIHHIPSRR 67.168 0.015079 148163000 4578.8 4839.2 6795.3 5277.4 4846.8 4463.1 4104.8 5983.4 2738.98 6256.1 TRUE FALSE 4642.917327 5367.560221 5079.742472 4938.931185 5507.016217 5254.56812 4883.664372 5475.072823 3002.071267 4981.103386 0.932106196 1.077584584 1.019802658 0.991533562 1.105581593 1.054900433 0.980438267 1.099168678 0.602692021 1 12.28224964 -8.738765424 24.9941575 0.801345658 1.03377299 0.446984761 0.102900889 162.2522096 178856.4163 0.062885918 0.023731858 1.82E-09 8.738765424 0.232427333 YS(ph)PSQNS(ph)PIHHIPSRRS(ph)PAK ddPTM_K562_Paclitaxel_30min_R1 1 YSPSQNSPIHHIPSRRSPAK 20 2 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7;H0YF00 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 3 Y(0.196)S(0.741)PS(0.276)QNS(0.787)PIHHIPS(0.039)RRS(0.962)PAK 79.373 0.010539 9389000 2541.8 1878.6 4604.5 2719.8 1981.6 1922.3 1924.1 3033.2 1743.6 3127.2 TRUE FALSE 2577.393042 2083.711901 3442.037027 2545.364201 2251.527469 2263.192915 2289.187931 2775.510727 1911.080571 2489.874923 1.035149604 0.836874126 1.382413628 1.02228597 0.904273322 0.908958475 0.919398765 1.114718937 0.767540792 1 11.28185756 -6.528245239 22.06729779 0.941559225 1.083740351 0.171678279 0.148032388 61.67159146 253589.796 0.043343232 0.056238663 2.96E-07 6.528245239 0.142181126 YS(ph)PSQNSPIHHIPSRR ddPTM_K562_Paclitaxel_30min_R1 1 YSPSQNSPIHHIPSRR 16 1 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7;H0YF00 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 Y(0.333)S(0.419)PS(0.248)QNSPIHHIPSRR 76.759 0.011648 9232700 966.11 882.17 1136.7 1009.7 927.65 693.07 852.79 1035.3 512.06 1078.2 TRUE FALSE 979.6385207 978.4883039 849.7260265 944.9423613 1054.011635 815.9762333 1014.602451 947.3448029 561.2456509 858.4622482 1.141155039 1.139815182 0.989823406 1.1007384 1.227790316 0.950509163 1.181883598 1.10353694 0.653780236 1 9.745610881 -8.735893794 24.94561558 0.826890226 1.10321063 0.50535068 0.109819813 140.5123589 137212.9738 0.069148025 0.02611446 1.84E-09 8.735893794 0.276320404 YS(ph)SSGSPANSFHFK ddPTM_K562_Paclitaxel_30min_R1 1 YSSSGSPANSFHFK 14 0 H3BRH4;O00418 H3BRH4 EEF2K Eukaryotic elongation factor 2 kinase 1 YS(0.618)S(0.207)S(0.029)GS(0.146)PANSFHFK 141.1 4.80E-06 17349000 1478.9 1462.7 3035.4 1950.6 1129.1 1302.9 948.71 1609.2 1381.6 1906.5 TRUE FALSE 1499.609163 1622.402533 2269.075729 1825.497247 1282.902536 1533.951021 1128.72277 1472.488416 1514.308853 1517.954253 0.987914596 1.068808582 1.494824843 1.202603598 0.845152305 1.010538373 0.743581546 0.970047953 0.997598478 1 10.5679126 -6.751800521 24.80609408 0.921246193 1.201863536 0.436858066 0.144584308 173.054847 445363.0765 0.044751121 0.057014255 1.77E-07 6.751800521 0.280617344 YSAQTDITDDSLDRKS(ph)PASSFSHSTPSGNGK ddPTM_K562_Paclitaxel_30min_R1 1 YSAQTDITDDSLDRKSPASSFSHSTPSGNGK 31 2 E9PGC8;P78559;P78559-2 E9PGC8 MAP1A Microtubule-associated protein 1A;MAP1A heavy chain;MAP1 light chain LC2 1 Y(0.001)S(0.001)AQT(0.016)DIT(0.032)DDS(0.139)LDRKS(0.636)PAS(0.021)S(0.056)FS(0.066)HS(0.026)T(0.006)PSGNGK 47.822 0.0061453 13264000 2259.5 2030.8 5583.7 2427.7 1910.7 1651.2 1414.3 2384.2 2991.7 3987 TRUE FALSE 2291.139971 2252.529612 4174.025877 2271.998188 2170.969688 1944.017136 1682.656042 2181.647328 3279.066152 3174.447211 0.721744549 0.709581688 1.314882749 0.715714591 0.68388905 0.612395484 0.530062694 0.687252672 1.032956585 1 11.63228967 YSDVEVPASVTGYSFASDGDS(ph)GTCSPLRHSFQK ddPTM_K562_Paclitaxel_30min_R1 2 YSDVEVPASVTGYSFASDGDSGTCSPLRHSFQK 33 1 E7EV99;E7ENY0;P35611-5;P35611-2;P35611-6;P35611-4;P35611;P35611-3;H0Y9H2 E7EV99 ADD1 Alpha-adducin 1 YSDVEVPASVTGYSFAS(0.014)DGDS(0.365)GT(0.093)CS(0.264)PLRHS(0.264)FQK;YSDVEVPASVT(0.001)GY(0.001)S(0.003)FAS(0.022)DGDS(0.658)GT(0.195)CS(0.06)PLRHS(0.06)FQK 75.005 1.70E-05 178517000 5735.2 4808.6 8505 5603.1 4855 5097.1 5543.3 8501.5 7724.2 11689.2 TRUE FALSE 5815.510495 5333.61921 6357.807561 5243.742245 5516.333196 6000.999118 6595.112237 7779.24451 8466.143923 9306.934624 0.624857779 0.57308012 0.683125843 0.563423131 0.592712146 0.644787931 0.708623462 0.835854642 0.909659761 1 13.18409036 -8.404080416 1.087250154 0.992634786 0.605120294 0.950298911 0.031988769 0.098153411 0.206341897 0.028661445 0.01060748 3.94E-09 8.404080416 -0.387514492 YSEEGLS(ph)PSK ddPTM_K562_Paclitaxel_30min_R1 1 YSEEGLSPSK 10 0 J3KPG5;F8VU39;Q9UIF9-2;Q9UIF9-3;Q9UIF9;A0A0C4DGI9 J3KPG5 BAZ2A Bromodomain adjacent to zinc finger domain protein 2A 1 YSEEGLS(0.996)PS(0.004)K 111.94 0.0048584 24445000 1635.5 1349.8 3288.2 1922 1415.5 1213 1208 1768.8 1392.1 2375.5 TRUE FALSE 1658.402046 1497.175729 2458.053242 1798.731523 1608.315065 1428.108519 1437.211694 1618.529399 1525.817425 1891.371796 0.876824985 0.791581926 1.299613988 0.951019533 0.850343157 0.755064933 0.759877935 0.855743647 0.806725271 1 10.88521727 -6.748869875 4.274191632 0.821000836 0.992039294 0.199722596 0.138029081 0.307284464 13.0133394 0.043707959 0.054175355 1.78E-07 6.748869875 0.171038458 YSEWTSPAEDS(ph)SPGISLSSSR ddPTM_K562_Paclitaxel_30min_R1 2 YSEWTSPAEDSSPGISLSSSR 21 0 H0YNU5;A0A3B3IT82;P54132 H0YNU5 BLM Bloom syndrome protein 1 YSEWTSPAEDS(0.481)S(0.481)PGIS(0.029)LS(0.003)S(0.006)SR;YSEWT(0.013)S(0.286)PAEDS(0.364)S(0.336)PGISLSSSR 115.91 1.75E-05 12624000 1270.41 1405.53 1694.19 1181.36 1299.93 1407.67 1472.63 1849.15 1284.3 2139.74 TRUE FALSE 1288.19966 1558.990519 1266.470781 1105.592857 1477.002474 1657.30051 1752.053855 1692.053165 1407.662753 1703.659813 0.756136671 0.915083226 0.743382435 0.648951656 0.866958569 0.972788403 1.02840593 0.993187227 0.826258119 1 10.73442157 -7.034929352 4.653636156 0.96504604 0.772599965 0.581111616 0.079078462 0.159519382 8.236219928 0.027494487 0.028689799 9.23E-08 7.034929352 -0.192446075 YSEWTSPAEDSS(ph)PGISLSSSR ddPTM_K562_Paclitaxel_30min_R1 1 YSEWTSPAEDSSPGISLSSSR 21 0 H0YNU5;A0A3B3IT82;P54132 H0YNU5 BLM Bloom syndrome protein 1 YSEWTSPAEDS(0.419)S(0.579)PGIS(0.001)LSSSR 206.64 2.06E-30 10761000 779.61 914.12 934.77 884.27 694.06 735.28 943.89 1063.9 749.54 1164.9 TRUE FALSE 790.5269453 1013.926713 698.7757524 827.55688 788.6027225 865.6715842 1122.9882 973.5150543 821.536666 927.4927406 0.852326828 1.093190996 0.753402934 0.892251598 0.850252178 0.93334594 1.210778425 1.049620134 0.885760751 1 9.85719218 -7.540329984 24.96037022 1.045158782 0.892335838 0.292949281 0.108588087 302.1166556 432111.2158 0.041481406 0.032138101 2.88E-08 7.540329984 -0.152822945 YSGGNYRDNYDN ddPTM_K562_Paclitaxel_30min_R1 2 YSGGNYRDNYDN 12 1 P98179 P98179 RBM3 RNA-binding protein 3 0 ; 113.93 0.025084 19321100 2594.8 2247.4 3154.3 2357.9 2588.8 2318.5 2148.4 2728.3 2695 2682.3 FALSE TRUE 2631.135206 2492.778732 2357.957953 2206.674848 2941.438389 2729.653422 2556.047685 2496.513885 2953.866792 2135.645788 1.232009175 1.167224802 1.104095991 1.033258821 1.377306296 1.278139585 1.196850011 1.16897376 1.383125801 1 11.06045667 -6.750404629 24.99872259 1.242857501 1.134363407 0.155813927 0.11282936 384.5445854 871164.2045 0.032628452 0.041720375 1.78E-07 6.750404629 -0.108494094 YSHSGS(ph)S(ph)SPDTK ddPTM_K562_Paclitaxel_30min_R1 1 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 2 YSHS(0.009)GS(0.701)S(0.825)S(0.462)PDT(0.003)K 99.215 0.0054105 0 1705.1 1388.5 3184.4 2038.5 1210.1 1444 1375.5 1741.1 1664.5 2566.1 TRUE FALSE 1728.976661 1540.101126 2380.458836 1907.759734 1374.936107 1700.073125 1636.493944 1593.182687 1824.382662 2043.127411 0.846240255 0.753795929 1.165105427 0.933744867 0.672956615 0.832093542 0.800974983 0.779776473 0.892936315 1 10.99656346 YSHSGSSS(ph)PDTK ddPTM_K562_Paclitaxel_30min_R1 3 YSHSGSSSPDTK 12 0 Q9UQ35;Q9UQ35-2;I3L4D8;I3L182 Q9UQ35 SRRM2 Serine/arginine repetitive matrix protein 2 1 YSHSGSSS(1)PDTK;YSHSGS(0.001)S(0.039)S(0.96)PDTK;YSHSGS(0.005)S(0.005)S(0.989)PDTK 179.6 0.00055594 68114300 15539.65 12515.3 26478.9 17291.35 12776.79 10935.53 11105.9 16245.88 14963.82 18745.4 TRUE FALSE 15757.25304 13881.76278 19793.97421 16182.3602 14517.20511 12874.7927 13213.18655 14865.69109 16401.16177 14925.07719 1.055756888 0.930096548 1.326222569 1.084239632 0.972672029 0.862628216 0.885301053 0.996021052 1.098899628 1 13.86545077 -6.752685383 5.132446937 0.958710938 1.104712971 0.251175573 0.109320322 0.253188159 18.7416121 0.03519939 0.043358294 1.77E-07 6.752685383 0.146002033 YSHSYLSDS(ph)DTEAKLTETNA ddPTM_K562_Paclitaxel_30min_R1 1 YSHSYLSDSDTEAKLTETNA 20 1 A0A0D9SFK2;Q92614-3;Q92614-4;Q92614;Q92614-5;Q92614-2 A0A0D9SFK2 MYO18A Unconventional myosin-XVIIIa 1 YSHSYLS(0.002)DS(0.735)DT(0.262)EAKLT(0.001)ETNA 74.873 0.0049159 26290000 941.09 760.21 1854.4 1209 727.92 951.02 869.75 1305.8 1160.4 1731.1 TRUE FALSE 954.2681635 843.2122987 1386.233785 1131.460151 827.0750278 1119.670044 1034.780522 1194.864139 1271.861605 1378.30087 0.692351129 0.611776657 1.005755576 0.820909408 0.600068567 0.81235532 0.750765341 0.866910967 0.922775014 1 10.42867513 -8.661118779 1.429678192 0.994922314 0.756324702 0.372186261 0.109558668 0.463341797 1.785378415 0.106222119 0.033663207 2.18E-09 8.661118779 -0.238597612 YSLADQTSGDQS(ph)PLPPCTPTPPCAEMREDSAR ddPTM_K562_Paclitaxel_30min_R1 1 YSLADQTSGDQSPLPPCTPTPPCAEMREDSAR 32 1 Q06124;Q06124-1 Q06124 PTPN11 Tyrosine-protein phosphatase non-receptor type 11 1 Y(0.001)S(0.007)LADQT(0.172)S(0.202)GDQS(0.443)PLPPCT(0.082)PT(0.094)PPCAEMREDS(0.001)AR 46.149 0.013217 20250000 213.29 265.85 331.71 488.54 329.57 195.08 258 418.22 284.47 249 TRUE FALSE 216.2767181 294.876402 247.965708 457.207231 374.4630137 229.6746989 306.9541531 382.6896006 311.7946145 198.2536633 1.090909063 1.487369248 1.25074969 2.306172927 1.888807538 1.158489054 1.548289943 1.930302796 1.572705439 1 7.631203714 YSLS(ph)PSK ddPTM_K562_Paclitaxel_30min_R1 2 YSLSPSK 7 0 P49792;Q99666;O14715;Q7Z3J3;P0DJD1;P0DJD0;F8VYC4;A0A1W2PNU4;A0A286YES2;J3KQ37;Q99666-2;F8W705;J3KNE0;A6NKT7 P49792;J3KNE0 RANBP2;RGPD5;RGPD8;RGPD4;RGPD2;RGPD1;RGPD3 E3 SUMO-protein ligase RanBP2;RANBP2-like and GRIP domain-containing protein 5/6;RANBP2-like and GRIP domain-containing protein 8;RanBP2-like and GRIP domain-containing protein 4;RANBP2-like and GRIP domain-containing protein 2;RANBP2-like and GRIP domain-containing protein 1;RanBP2-like and GRIP domain-containing protein 3 1 Y(0.004)S(0.028)LS(0.955)PS(0.013)K;YS(0.002)LS(0.998)PSK 122.33 0.0017356 151166000 8839.1 7828.1 13833.4 9524.6 7797.6 7513.4 6820 9601.2 6881.7 12404 TRUE FALSE 8962.874671 8682.798431 10340.98708 8913.734787 8859.765134 8845.795997 8114.059397 8785.518131 7542.718033 9876.057991 0.907535646 0.879176534 1.047076383 0.902559988 0.897095293 0.895680848 0.821588877 0.889577414 0.763737722 1 13.26971959 -7.011642842 1.725899357 0.862260344 0.938899101 0.139082148 0.070038258 0.618236404 3.724632048 0.026260748 0.028764035 9.74E-08 7.011642842 0.076638757 YSPDEMNNS(ph)PNFEEK ddPTM_K562_Paclitaxel_30min_R1 1 YSPDEMNNSPNFEEK 15 0 Q14687-3;Q14687;Q14687-2;H7C3B5;H0Y613 Q14687-3 GSE1 Genetic suppressor element 1 1 YSPDEMNNS(1)PNFEEK 102.15 0.0043268 16689000 1131.3 1201.3 2741.8 1438.6 958.85 815.76 1087 1252.3 1138.8 2063.3 TRUE FALSE 1147.14169 1332.461997 2049.59868 1346.334635 1089.461603 960.4235822 1293.252575 1145.909298 1248.186828 1642.798327 0.698285158 0.811092862 1.247626471 0.819537379 0.663174283 0.584626589 0.787225403 0.69753498 0.759793097 1 10.68193967 -6.519621681 24.84728696 0.728598232 0.929105838 0.168921484 0.165137179 182.7209118 1393937.255 0.048754327 0.064273439 3.02E-07 6.519621681 0.200507607 YSPPAIS(ph)PLVSEK ddPTM_K562_Paclitaxel_30min_R1 2 YSPPAISPLVSEK 13 0 Q14694;Q14694-3;Q14694-2 Q14694 USP10 Ubiquitin carboxyl-terminal hydrolase 10 1 YSPPAIS(1)PLVSEK;YSPPAIS(0.939)PLVS(0.061)EK 127.57 0.00071765 28471000 2105.9 1682.55 2973.5 2546.3 1660.66 1724.14 1443.17 2730.6 1908.1 3186.2 TRUE FALSE 2135.389097 1866.256499 2222.803149 2382.991715 1886.870007 2029.892021 1717.003974 2498.618486 2091.381531 2536.850691 0.84174804 0.735658786 0.876205745 0.939350401 0.743784415 0.800162196 0.676825002 0.984929265 0.824400718 1 11.3088229 -9.038600346 1.146703027 0.992316378 0.811483367 0.273343822 0.087903483 0.724016526 2.125337072 0.083414183 0.026506488 9.15E-10 9.038600346 -0.180833011 YSPS(ph)QNS(ph)PIHHIPSRR ddPTM_K562_Paclitaxel_30min_R1 1 YSPSQNSPIHHIPSRR 16 1 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7;H0YF00 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 2 Y(0.002)S(0.355)PS(0.643)QNS(0.999)PIHHIPSRR 65.374 0.016162 143430000 1852.1 1745.9 2935.9 2303.1 1731.2 2035.4 1970.6 2473.2 1035 2360.3 TRUE FALSE 1878.035114 1936.523266 2194.695734 2155.389474 1967.018749 2396.349612 2344.511063 2263.086223 1134.416375 1879.269564 0.999343122 1.030465934 1.16784509 1.146929379 1.04669324 1.275149482 1.247565068 1.204237149 0.6036475 1 10.87595631 -8.746713643 24.99995491 0.801823687 1.142311154 0.542811787 0.1240453 150.5875714 255655.9885 0.084353636 0.031585599 1.79E-09 8.746713643 0.340487467 YSPS(ph)QNSPIHHIPSR ddPTM_K562_Paclitaxel_30min_R1 1 YSPSQNSPIHHIPSR 15 0 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7;H0YF00 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 YSPS(0.817)QNS(0.183)PIHHIPSR 166.21 2.16E-05 85451000 1580 1631.7 2399.9 1722 1806.1 1484.1 1594 1981.5 984.19 2358.9 TRUE FALSE 1602.124875 1809.854524 1794.015563 1611.558627 2052.121398 1747.284297 1896.453179 1813.159207 1078.725847 1878.154885 0.853031285 0.96363433 0.955201074 0.858054168 1.092626286 0.930319598 1.009742697 0.965393867 0.57435404 1 10.87510033 YSPSNGPPQPT(ph)PPPHYR ddPTM_K562_Paclitaxel_30min_R1 4 YSPSNGPPQPTPPPHYR 17 0 O75081;O75081-2;O75081-4;H3BNH2 O75081 CBFA2T3 Protein CBFA2T3 1 YS(0.019)PS(0.012)NGPPQPT(0.969)PPPHYR;YSPSNGPPQPT(0.997)PPPHY(0.003)R;YSPS(0.007)NGPPQPT(0.993)PPPHYR;YSPSNGPPQPT(1)PPPHYR 180.76 6.21E-10 23140500 4480.68 4654.55 5452.7 5358.87 4037.66 3778.65 3785.51 4639.05 4276.14 4850.8 TRUE FALSE 4543.423344 5162.74951 4076.098447 5015.176064 4587.65765 4448.740523 4503.790761 4244.933746 4686.882353 3862.204297 1.176380894 1.336736514 1.055381366 1.298526872 1.187834018 1.151865665 1.166119245 1.099096117 1.213525229 1 11.91520876 -14.99999999 0.127267142 0.368404173 1.269435457 0.367184154 0.077110324 149.3471312 1.206533684 23.99950476 0.589748844 1.00E-15 14.99999999 0.901031285 YSPSQNS(ph)PIHHIPSR ddPTM_K562_Paclitaxel_30min_R1 1 YSPSQNSPIHHIPSR 15 0 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7;H0YF00 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 Y(0.003)S(0.163)PS(0.401)QNS(0.434)PIHHIPSR 108.25 0.0017143 88389000 1509.8 1624.1 2078.3 2049.7 1825.5 1759.5 1674.6 1906.8 948.32 2290.8 TRUE FALSE 1530.941858 1801.42473 1553.607461 1918.241416 2074.164006 2071.52262 1992.346608 1744.805438 1039.410373 1823.933703 0.839362668 0.987659106 0.851789437 1.05170567 1.137192653 1.135744472 1.092334993 0.956616699 0.569872892 1 10.83283758 -8.541567883 24.90697703 0.777705667 1.017871799 0.301875417 0.13703716 274.1588586 365363.5005 0.092962515 0.035149206 2.87E-09 8.541567883 0.240166131 YSPSQNS(ph)PIHHIPSRR ddPTM_K562_Paclitaxel_30min_R1 2 YSPSQNSPIHHIPSRR 16 1 E9PK91;Q9NYF8-3;Q9NYF8-2;Q9NYF8;E9PQN2;E9PKI6;A0A1W2PQ43;E9PK09;Q9NYF8-4;E9PJA7;H0YF00 E9PK91 BCLAF1 Bcl-2-associated transcription factor 1 1 YSPSQNS(0.999)PIHHIPS(0.001)RR;YS(0.001)PS(0.003)QNS(0.996)PIHHIPSRR 70.134 0.016485 137500000 5655.9 5971.9 7973.8 6970.1 5894.6 6002.4 5736 6704.7 4200.9 7244.5 TRUE FALSE 5735.10005 6623.932238 5960.715571 6523.068983 6697.544316 7066.841362 6824.376056 6135.093886 4604.415215 5768.066923 0.994284589 1.148379921 1.03339917 1.130893429 1.161141922 1.225166326 1.183130527 1.063630843 0.798259673 1 12.49387219 -8.591362194 6.071238412 0.902818671 1.127778831 0.563989251 0.078336 0.146689533 9.654767984 0.054909598 0.020144133 2.56E-09 8.591362194 0.22496016 YSPT(ph)SPTYSPT(ph)SPK ddPTM_K562_Paclitaxel_30min_R1 1 YSPTSPTYSPTSPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 2 YS(0.005)PT(0.924)S(0.071)PTYSPT(0.872)S(0.127)PK 178.67 3.29E-05 21013000 2067.5 2187.2 4422.4 2989.5 1503.3 1710.1 1841.8 2264.4 2307.3 3068.6 TRUE FALSE 2096.451379 2426.005893 3305.910424 2797.766851 1708.074911 2013.362224 2191.271935 2072.025086 2528.926474 2443.217636 0.858069845 0.992955297 1.353096988 1.145115691 0.699108784 0.82406176 0.896879551 0.848072254 1.035080313 1 11.25456667 -6.738767806 24.97272413 0.873931032 1.099554769 0.316291174 0.145652163 278.2112737 306448.2205 0.045337167 0.058487372 1.82E-07 6.738767806 0.225623737 YSPTS(ph)PTYSPTTPK ddPTM_K562_Paclitaxel_30min_R1 1 YSPTSPTYSPTTPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 YS(0.001)PT(0.058)S(0.768)PT(0.129)YS(0.042)PT(0.002)TPK 90.229 0.014736 52986000 3016.5 2819.3 5592.5 3631.3 2748.8 2829.3 2431 3590.5 3234.3 4693 TRUE FALSE 3058.740307 3127.120708 4180.604208 3398.404671 3123.233098 3331.03663 2892.269559 3285.464614 3544.968966 3736.564024 0.818597055 0.836897398 1.118836498 0.909499917 0.835856974 0.891470508 0.77404523 0.879274272 0.948724267 1 11.86749653 -3.520025259 16.38698667 0.896813609 0.464178144 0 0.095723037 0 0 0.022514755 0 0.000301978 3.520025259 -0.432635465 YSPTSPTYS(ph)PTSPK ddPTM_K562_Paclitaxel_30min_R1 2 YSPTSPTYSPTSPK 14 0 P24928 P24928 POLR2A DNA-directed RNA polymerase II subunit RPB1 1 YSPT(0.001)S(0.018)PT(0.221)YS(0.759)PT(0.001)SPK;YSPTS(0.002)PT(0.445)YS(0.529)PT(0.023)SPK 236.12 3.06E-36 57186000 7571.7 5599.9 11395.4 8185.1 6163.8 5162.5 5222.8 7740.8 6078.8 9119.6 TRUE FALSE 7677.727161 6211.31602 8518.490333 7660.144321 7003.413914 6077.99689 6213.799035 7083.170723 6662.695901 7261.020514 1.057389543 0.855432925 1.173180866 1.054968004 0.964521984 0.83707199 0.85577489 0.975506227 0.917597724 1 12.82595661 -6.969976929 5.314207508 0.910488306 1.030878423 0.295376045 0.085472792 0.237766776 18.05785787 0.027663046 0.030847412 1.07E-07 6.969976929 0.120390117 YSTPHAFTFNTS(ph)SPSSEGSLSQR ddPTM_K562_Paclitaxel_30min_R1 2 YSTPHAFTFNTSSPSSEGSLSQR 23 0 H7C155;P04049;P04049-2 H7C155 RAF1 RAF proto-oncogene serine/threonine-protein kinase 1 YSTPHAFTFNT(0.017)S(0.753)S(0.185)PS(0.029)S(0.012)EGS(0.005)LSQR;YSTPHAFTFNT(0.001)S(0.478)S(0.288)PS(0.099)S(0.099)EGS(0.034)LSQR 159.36 1.45E-18 64411000 3755.1 3795 3954.2 3648.7 3199.4 3020.6 3531 3971.4 3718.4 4804.2 TRUE FALSE 3807.682985 4209.350934 2955.913305 3414.688713 3635.212446 3556.260999 4200.988817 3634.004781 4075.568934 3825.101403 0.995446286 1.100454731 0.772767306 0.892705409 0.950357144 0.92971679 1.098268614 0.950041423 1.065479972 1 11.90128228 -7.726748087 24.99338888 1.024284358 0.938210296 0.203910345 0.085166592 318.0061858 229107.6124 0.033852607 0.026221006 1.88E-08 7.726748087 -0.086074063 YSVLNNDDYFADVS(ph)PLR ddPTM_K562_Paclitaxel_30min_R1 2 YSVLNNDDYFADVSPLR 17 0 Q1ED39;H3BMC9 Q1ED39 KNOP1 Lysine-rich nucleolar protein 1 1 YSVLNNDDYFADVS(1)PLR;YSVLNNDDYFADVS(1)PLR 132.52 2.32E-07 69899000 2070.81 1995.3 2364.07 2244.44 2159.08 1985.18 2225.59 2539.6 1893.81 2861.4 TRUE FALSE 2099.807729 2213.153602 1767.23129 2100.491664 2453.18325 2337.2238 2647.884084 2323.845128 2075.718912 2278.245109 0.921677707 0.971429102 0.77569849 0.92197791 1.076786356 1.025887772 1.162247237 1.020015414 0.911104299 1 11.15370726 -6.659340612 5.524858774 1.039429106 0.890595775 0.439976807 0.074834119 0.195103833 8.918008274 0.023072393 0.029839639 2.19E-07 6.659340612 -0.148833332 YT(ph)RHIDS(ph)SPY(ph)SPAYLSPPPES(ph)SWR ddPTM_K562_Paclitaxel_30min_R1 1 YTRHIDSSPYSPAYLSPPPESSWR 24 1 Q53ET0;H0YDQ8 Q53ET0 CRTC2 CREB-regulated transcription coactivator 2 4 Y(0.472)T(0.498)RHIDS(0.578)S(0.581)PY(0.583)S(0.193)PAY(0.05)LS(0.049)PPPES(0.498)S(0.498)WR 42.325 0.025446 43327000 189.42 61.264 234.27 117.49 148.39 55.044 144.11 160.68 158.97 183.64 TRUE FALSE 192.0724644 67.9530107 175.1256411 109.9547173 168.6032303 64.80528054 171.4541202 147.0292311 174.2397788 146.2140672 1.31363875 0.464750157 1.197734558 0.752011892 1.153125917 0.443221926 1.172623972 1.00557514 1.191675891 1 7.191938309 YTGEDFDEDLR ddPTM_K562_Paclitaxel_30min_R1 1 YTGEDFDEDLR 11 0 A0A2R8Y706;Q14204;A0A2R8Y6H2;A0A2R8YFZ7 A0A2R8Y706 DYNC1H1 Cytoplasmic dynein 1 heavy chain 1 0 115.7 0.027545 5320700 969.4 788.54 1003.8 969.36 918.97 729.76 1077.9 1140.9 541.77 1004.5 FALSE TRUE 982.9745909 874.6354639 750.3782752 907.1895883 1044.149272 859.1726897 1282.425898 1043.973424 593.8094292 799.7823486 1.22905262 1.093591857 0.938228102 1.134295587 1.305541782 1.074258129 1.603468619 1.305321911 0.742463784 1 9.643463631 -5.209948772 19.68274947 1.154769526 1.229057671 0.008048507 0.223206848 19190.84633 7332887.091 0.056812658 24.17378248 6.17E-06 5.209948772 0.074288145 YTGEEDGAGGHS(ph)PAPPQTEECLR ddPTM_K562_Paclitaxel_30min_R1 2 YTGEEDGAGGHSPAPPQTEECLR 23 0 J3KS37;O94762-4;O94762;J3KSV9 J3KS37 RECQL5 ATP-dependent DNA helicase Q5 1 YTGEEDGAGGHS(1)PAPPQTEECLR;YTGEEDGAGGHS(1)PAPPQTEECLR 113.8 5.43E-06 172866000 2158.5 1964.2 2745.7 2751.7 2424.9 1834.32 2227.73 2488.72 1647.37 2891.2 TRUE FALSE 2188.72566 2178.657998 2052.514077 2575.218278 2755.212434 2159.610897 2650.430138 2277.287702 1805.607249 2301.971853 0.950804701 0.946431207 0.891633003 1.118701028 1.196892321 0.938156952 1.151373825 0.989276954 0.784374165 1 11.16865448 -4.260586819 13.94409804 1.003761049 0.999266027 0 0.119842664 0 0 0.028271867 0 5.49E-05 4.260586819 -0.004495022 YVDEENS(ph)DGETSNHR ddPTM_K562_Paclitaxel_30min_R1 2 YVDEENSDGETSNHR 15 0 H0YFD2;F8WFC1;A0A494C108;Q8N9T8;H0YH26 H0YFD2 KRI1 Protein KRI1 homolog 1 YVDEENS(1)DGETSNHR;YVDEENS(0.538)DGET(0.44)S(0.022)NHR 203.92 4.92E-13 92803000 5682.1 4953.2 6743.7 5739.9 5135.5 5240 4661.3 5758 3816.4 6346.6 TRUE FALSE 5761.666931 5494.007127 5041.16953 5371.768505 5835.042045 6169.240427 5545.757341 5268.82196 4182.982272 5053.159436 1.140210794 1.087241991 0.997627246 1.063051458 1.154731435 1.220867955 1.097483151 1.042678749 0.827795427 1 12.30296998 -8.572642238 5.276071211 0.91518129 1.105806301 0.5641006 0.067669758 0.151527761 9.310257653 0.050978536 0.018622651 2.68E-09 8.572642238 0.19062501 YVEVS(ph)PATER ddPTM_K562_Paclitaxel_30min_R1 2 YVEVSPATER 10 0 Q9NTZ6 Q9NTZ6 RBM12 RNA-binding protein 12 1 YVEVS(0.987)PAT(0.013)ER;YVEVS(0.829)PAT(0.171)ER 132.17 0.00089226 35895000 3423.7 3257 4166.8 3136 3267.7 3492.8 3021.9 3735.4 3308.6 4012.3 TRUE FALSE 3471.642363 3612.610274 3114.839806 2934.870996 3712.816063 4112.199039 3595.28975 3418.054454 3626.405813 3194.591058 1.086725124 1.130852184 0.975035536 0.91870006 1.162219513 1.287238011 1.125430355 1.069950549 1.135170589 1 11.64141555 -6.80329462 24.99994693 1.141132377 1.031415783 0.242235556 0.087114388 208.8490658 124743.4116 0.028743732 0.032592631 1.57E-07 6.80329462 -0.109716594 YVIS(ph)DEEEEDDD ddPTM_K562_Paclitaxel_30min_R1 4 YVISDEEEEDDD 12 0 Q8WVC0-2;Q8WVC0 Q8WVC0-2 LEO1 RNA polymerase-associated protein LEO1 1 YVIS(1)DEEEEDDD;YVIS(1)DEEEEDDD;YVIS(1)DEEEEDDD;YVIS(1)DEEEEDDD 181.4 0.00012327 128391000 12357.5 12208.3 14953.2 13259.7 12122.3 10953.7 11713.8 13443.8 12896 13363.1 TRUE FALSE 12530.54313 13541.24348 11178.07972 12409.28219 13773.56249 12896.1849 13936.4324 12301.66528 14134.71842 10639.69288 1.177716618 1.272709995 1.050601727 1.166319585 1.294545119 1.212082439 1.309852883 1.156204921 1.328489325 1 13.37716889 -4.929107838 12.8659137 1.206248779 0.944773769 0 0.104301113 2733578.09 14256773.92 0.024737943 18322875.82 1.18E-05 4.929107838 -0.26147501 YVIYIER ddPTM_K562_Paclitaxel_30min_R1 1 YVIYIER 7 0 J3QRI7;J3QQQ9;J3QQV1;E5RIT6;J3QRC4;Q9UNX3;P61254;J3KS10 J3QRI7 RPL26;RPL26L1 60S ribosomal protein L26-like 1;60S ribosomal protein L26 0 114.72 0.023349 48497000 1683.6 1854.5 2587.9 1932.8 1558.9 1587.2 1724.8 2044.2 1541.1 2516.3 FALSE TRUE 1707.175594 2056.980582 1934.552638 1808.838859 1771.248572 1868.667635 2052.071796 1870.532451 1689.129541 2003.476679 0.852106547 1.026705528 0.965597782 0.90284997 0.884087442 0.932712447 1.024255394 0.933643236 0.843099178 1 10.96829 -8.536687747 24.99832151 0.910490144 0.944099905 0.007538425 0.06337177 908.0074776 1643723.259 0.042104323 0.015928767 2.91E-09 8.536687747 0.03360976 YVSFEDR ddPTM_K562_Paclitaxel_30min_R1 1 YVSFEDR 7 0 Q13643 Q13643 FHL3 Four and a half LIM domains protein 3 0 128.38 0.0032824 6579600 1353.1 1313.2 1731.5 1639.3 1295.8 1323.7 1768.2 2368.2 1249 1927.5 FALSE TRUE 1372.047575 1456.579617 1294.36141 1534.162635 1472.309898 1558.439609 2103.706719 2167.006628 1368.972031 1534.674442 0.894031683 0.9491131 0.843411068 0.999666505 0.959363014 1.015485478 1.370783706 1.41203018 0.892027647 1 10.58371693 -7.571559549 7.178793312 1.203170345 0.93485966 0.353413342 0.149972555 0.213506369 25.39081651 0.05692755 0.044108889 2.68E-08 7.571559549 -0.268310685 YVSQNCVT(ph)SPMNIDR ddPTM_K562_Paclitaxel_30min_R1 1 YVSQNCVTSPMNIDR 15 0 A0A1B0GWF6;A0A0C4DGF8;A0A1B0GV09;Q9H9B1-3;Q9H9B1 A0A1B0GWF6 EHMT1 Histone-lysine N-methyltransferase EHMT1 1 YVSQNCVT(0.5)S(0.5)PMNIDR 184.99 2.04E-06 26461000 1234.2 1139.4 1464.1 1020.6 987.32 1125.7 1146.6 1574.2 1009.4 1605.1 TRUE FALSE 1251.482608 1263.803545 1094.469847 955.143284 1121.809699 1325.327089 1364.161364 1440.461884 1106.35738 1277.979739 0.979266392 0.988907341 0.856406259 0.747385311 0.877799284 1.037048592 1.067435831 1.127139844 0.865708075 1 10.31964925 -7.261743136 24.26454764 1.0304108 0.885666254 0.345059258 0.08847745 21.04437442 1680998.987 0.032140451 0.030127153 5.47E-08 7.261743136 -0.144744546 YVSQNCVTS(ph)PMNIDR ddPTM_K562_Paclitaxel_30min_R1 1 YVSQNCVTSPMNIDR 15 0 A0A1B0GWF6;A0A0C4DGF8;A0A1B0GV09;Q9H9B1-3;Q9H9B1 A0A1B0GWF6 EHMT1 Histone-lysine N-methyltransferase EHMT1 1 YVSQNCVT(0.399)S(0.601)PMNIDR 116.87 0.0011645 22874000 1660 1997.1 2097.9 1980 1861.5 1897.3 2150.8 2428.2 1616.7 2804.5 TRUE FALSE 1683.245122 2215.150132 1568.259199 1853.011662 2115.067815 2233.759516 2558.903072 2221.909254 1771.991259 2232.941361 0.753824149 0.99203238 0.702328877 0.829852362 0.947211536 1.000366402 1.145978626 0.995059384 0.793568201 1 11.12472965 -6.856528666 3.440325155 0.994797162 0.822500996 0.361274053 0.105554349 0.274490226 6.38203678 0.034805566 0.040782954 1.39E-07 6.856528666 -0.172296166 YWCDAEYDAYRR ddPTM_K562_Paclitaxel_30min_R1 1 YWCDAEYDAYRR 12 1 F1T0I1;O15027-2;O15027-4;O15027-3;O15027;O15027-5;A0A3F2YNX0;A0A3F2YNZ0;X6RGP5 F1T0I1 SEC16A Protein transport protein Sec16A 0 110.84 0.0085692 5523000 981.1 1098.3 1186 1166.7 972.09 945.76 1074.3 1220.6 1055.1 1183.5 FALSE TRUE 994.838427 1218.216108 886.5796317 1091.873084 1104.505116 1113.477257 1278.142817 1116.902411 1156.447069 942.3020504 1.055753223 1.292808508 0.940865651 1.158729394 1.172134896 1.181656409 1.35640458 1.185291288 1.227257299 1 9.880045773 -6.819674109 2.476934836 1.20934526 1.110086485 0.087764586 0.115563002 0.603940931 7.576456077 0.037367325 0.045632797 1.51E-07 6.819674109 -0.099258775 YYDSRPGGYGYGYGR ddPTM_K562_Paclitaxel_30min_R1 1 YYDSRPGGYGYGYGR 15 1 P98179 P98179 RBM3 RNA-binding protein 3 0 149.69 2.54E-30 0 1067.7 966.18 990.6 899.32 815.41 792.2 1042 1398.7 1306.1 1335.8 FALSE TRUE 1082.651094 1071.6708 740.5107784 841.6416404 926.482647 932.685547 1239.71406 1279.871705 1431.556741 1063.563227 1.017947092 1.007623029 0.69625459 0.791341426 0.87111196 0.876944147 1.165623283 1.20338093 1.346000599 1 10.05469009 -7.78275437 4.595705154 1.201470863 0.868762156 0.610117588 0.117877058 0.132316883 6.709000385 0.051622227 0.035809296 1.65E-08 7.78275437 -0.332708706 YYEVLGAAATTDYNNNHEGREEDQR ddPTM_K562_Paclitaxel_30min_R1 2 YYEVLGAAATTDYNNNHEGREEDQR 25 1 P46379-3;P46379;P46379-2;A0A0G2JK23;A0A024RCR6;P46379-5;A0A0G2JL47;A0A0G2JJM1;X6REW1;F6S6P2;P46379-4 P46379-3;P46379-4 BAG6;BAT3 Large proline-rich protein BAG6 0 ; 80.109 0.00021149 42109000 1998.92 1896.67 2245.6 2178.3 2008.66 1890.23 2198.17 2286.8 2019.13 2551.2 FALSE TRUE 2026.911047 2103.754845 1678.670507 2038.593588 2282.273499 2225.43575 2615.261282 2092.522066 2213.076458 2031.26404 0.997857003 1.035687534 0.826416691 1.003608368 1.123573034 1.095591566 1.287504348 1.030157589 1.089507034 1 10.98816207 -6.655102767 4.395542432 1.114529679 0.955091776 0.380100644 0.087465171 0.217538164 7.359562027 0.02658599 0.034551396 2.21E-07 6.655102767 -0.159437902 YYGGGS(ph)EGGRAPK ddPTM_K562_Paclitaxel_30min_R1 2 YYGGGSEGGRAPK 13 1 P14866 P14866 HNRNPL Heterogeneous nuclear ribonucleoprotein L 1 YYGGGS(1)EGGRAPK;YYGGGS(1)EGGRAPK 152 0.0014469 28371000 3560.9 3064.7 6022.5 4230.1 3494 3297.4 2553.96 3725.9 4108.3 5047 TRUE FALSE 3610.763586 3399.31431 4502.04539 3958.800319 3969.941954 3882.147592 3038.560577 3409.361539 4502.920571 4018.41863 0.898553366 0.845933344 1.120352508 0.985163738 0.98793638 0.966088392 0.756158294 0.848433638 1.120570301 1 11.97241215 -7.56514191 24.99797695 0.910440579 0.970965323 0.010610765 0.11113321 474.0036753 280361.4926 0.04364116 0.033804314 2.72E-08 7.56514191 0.060524744 YYPTEDVPR ddPTM_K562_Paclitaxel_30min_R1 2 YYPTEDVPR 9 0 F8VR69;F8VZ45;U3KQR5;Q02878 F8VR69 RPL6 60S ribosomal protein L6 0 ; 132.08 0.0045026 73514000 2701.5 2603.25 2756 3022.9 2350.6 2575 2516.3 2795.2 2542.1 3092.5 FALSE TRUE 2739.329335 2887.481639 2060.213714 2829.024724 2670.791516 3031.640095 2993.754789 2557.730313 2786.280063 2462.246802 1.112532396 1.172701955 0.836721044 1.148960665 1.084696917 1.23124948 1.215863002 1.038779017 1.131600642 1 11.26575966 YYS(ph)DS(ph)DDELTVEQR ddPTM_K562_Paclitaxel_30min_R1 1 YYSDSDDELTVEQR 14 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 2 Y(0.232)Y(0.002)S(0.766)DS(1)DDELTVEQR 169.4 0.00016476 14882000 3342.9 3121.9 4394.3 3540.3 3231.3 2857.6 3208.7 3500.4 3241.5 4036.1 TRUE FALSE 3389.710914 3462.7596 3284.904617 3313.241004 3671.457766 3364.355237 3817.534074 3203.019171 3552.860558 3213.540605 1.054821249 1.077552776 1.022207285 1.031025094 1.142496149 1.046930987 1.187952649 0.996725906 1.105590685 1 11.64994799 YYS(ph)DSDDELTVEQR ddPTM_K562_Paclitaxel_30min_R1 2 YYSDSDDELTVEQR 14 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 YYS(0.981)DS(0.019)DDELTVEQR;Y(0.01)Y(0.01)S(0.569)DS(0.402)DDELT(0.008)VEQR 121.92 0.00074388 20086700 1817.09 1649.05 2483.1 2033.69 1847.83 1843.85 1614.96 1796.68 1708.85 2138.5 TRUE FALSE 1842.534866 1829.098856 1856.210694 1903.258226 2099.53573 2170.830909 1921.390229 1644.040819 1872.992678 1702.672526 1.08214283 1.0742517 1.090174808 1.117806388 1.23308252 1.274955034 1.128455531 0.965564895 1.100031068 1 10.73358527 -8.141901794 6.582896371 1.025415627 1.146951741 0.395582152 0.068730739 0.281936319 14.03147362 0.036626446 0.021005782 7.21E-09 8.141901794 0.121536115 YYSDS(ph)DDELTVEQR ddPTM_K562_Paclitaxel_30min_R1 1 YYSDSDDELTVEQR 14 0 Q8NFC6 Q8NFC6 BOD1L1 Biorientation of chromosomes in cell division protein 1-like 1 1 YYS(0.012)DS(0.988)DDELTVEQR 309.29 2.66E-196 17622000 838.13 903.64 1124.3 1527.8 749.34 1108.9 905.07 888.64 914.77 1238 TRUE FALSE 849.8664059 1002.302471 840.4565598 1429.813746 851.4127944 1305.547845 1076.802308 813.1444853 1002.637746 985.6949204 0.862200249 1.016848571 0.852653841 1.450564182 0.86376908 1.324494849 1.0924296 0.824945395 1.017188711 1 9.944997381 -11.61543734 4.770907115 0.999422923 1.039440852 0.001904119 0.199314837 0.00121156 9.77E-05 0.191114854 0.04568531 2.42E-12 11.61543734 0.040017928 YYTVFDRDNNR ddPTM_K562_Paclitaxel_30min_R1 1 YYTVFDRDNNR 11 1 A0A1B0GW44;A0A1B0GVP3;A0A1B0GV23;A0A1B0GVD5;A0A1B0GWE8;P07339;H7C1V0;H7C469 A0A1B0GW44 CTSD Cathepsin D;Cathepsin D light chain;Cathepsin D heavy chain 0 118.03 0.027448 27046000 1767.1 1700 1742.1 1706.6 1273.6 1309.2 1793.8 2548.6 1897.3 2312.3 FALSE TRUE 1791.844852 1885.611749 1302.285309 1597.146314 1447.085882 1541.368238 2134.164186 2332.080522 2079.544142 1841.051991 0.973272271 1.024203422 0.707359333 0.867518312 0.78601033 0.837221461 1.159209081 1.266710845 1.129541237 1 10.84631465 -7.764594013 24.96915219 1.161091265 0.862356655 0.622634664 0.103495339 51.4253579 407027.7569 0.043296281 0.030584458 1.72E-08 7.764594013 -0.29873461 YYVTIIDAPGHR ddPTM_K562_Paclitaxel_30min_R1 2 YYVTIIDAPGHR 12 0 A0A087WVQ9;Q5VTE0;P68104;A6PW80;Q5JR01;A0A087WV01 A0A087WVQ9 EEF1A1;EEF1A1P5 Putative elongation factor 1-alpha-like 3;Elongation factor 1-alpha 1;Elongation factor 1-alpha 0 ; 147.62 0.00058426 252190000 11759 11908 12576.2 11673.7 11222.9 10550.7 13020 14132.7 7119.8 15628.3 FALSE TRUE 11923.66228 13208.15571 9401.18277 10925.00113 12751.64899 12421.71851 15490.47703 12932.03892 7803.688602 12443.24388 0.958243879 1.06147206 0.755525075 0.877986579 1.024784944 0.998270115 1.244890575 1.039281963 0.627142623 1 13.60307502 -4.914145903 14.81750166 0.96613255 0.810796632 0 0.162728552 53469441.45 150925451.9 0.0418286 264604898.3 1.22E-05 4.914145903 -0.155335918